Query 000693
Match_columns 1349
No_of_seqs 327 out of 385
Neff 5.7
Searched_HMMs 46136
Date Mon Apr 1 22:04:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 2.5E-61 5.5E-66 629.8 118.6 772 115-947 835-1761(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 1.6E-50 3.5E-55 515.5 0.3 700 342-1111 1-822 (859)
3 TIGR00606 rad50 rad50. This fa 100.0 1.9E-21 4.2E-26 260.8 105.9 252 1012-1267 756-1015(1311)
4 KOG0161 Myosin class II heavy 100.0 4.2E-19 9.1E-24 235.3 122.0 843 341-1267 890-1881(1930)
5 TIGR00606 rad50 rad50. This fa 99.9 1.5E-14 3.3E-19 194.9 113.3 339 872-1216 742-1134(1311)
6 KOG4674 Uncharacterized conser 99.9 5.4E-12 1.2E-16 166.0 141.9 205 95-327 57-269 (1822)
7 KOG4674 Uncharacterized conser 99.9 5.9E-12 1.3E-16 165.7 135.7 269 823-1094 910-1225(1822)
8 PF01576 Myosin_tail_1: Myosin 99.8 1.4E-20 3E-25 241.8 0.4 624 332-1036 188-856 (859)
9 TIGR02169 SMC_prok_A chromosom 99.8 4E-10 8.7E-15 150.9 99.5 112 832-943 674-785 (1164)
10 TIGR02168 SMC_prok_B chromosom 99.8 1.6E-10 3.5E-15 154.4 94.5 19 258-276 172-190 (1179)
11 TIGR02169 SMC_prok_A chromosom 99.8 1.7E-10 3.7E-15 154.5 90.3 44 326-369 239-282 (1164)
12 TIGR02168 SMC_prok_B chromosom 99.8 5.7E-10 1.2E-14 149.2 94.9 104 836-939 674-777 (1179)
13 COG1196 Smc Chromosome segrega 99.7 1.3E-09 2.8E-14 146.2 94.4 335 262-602 159-493 (1163)
14 KOG0962 DNA repair protein RAD 99.7 1.6E-08 3.6E-13 130.7 90.5 248 1013-1263 753-1035(1294)
15 COG1196 Smc Chromosome segrega 99.7 1.5E-08 3.1E-13 136.3 93.9 77 833-909 668-744 (1163)
16 PF10174 Cast: RIM-binding pro 99.6 2.2E-08 4.7E-13 127.0 80.0 226 531-763 180-411 (775)
17 PRK02224 chromosome segregatio 99.6 3.5E-09 7.7E-14 138.7 73.1 68 677-745 547-614 (880)
18 PRK02224 chromosome segregatio 99.6 1.1E-08 2.4E-13 134.0 76.2 94 832-926 516-609 (880)
19 PF10174 Cast: RIM-binding pro 99.5 4.8E-07 1E-11 115.0 79.2 125 312-438 41-165 (775)
20 PRK03918 chromosome segregatio 99.5 4.3E-07 9.2E-12 119.3 74.1 69 244-312 162-230 (880)
21 PRK03918 chromosome segregatio 99.4 4.2E-06 9.2E-11 110.0 75.4 67 830-896 624-695 (880)
22 KOG0996 Structural maintenance 99.4 7.9E-06 1.7E-10 104.4 83.7 332 377-753 264-607 (1293)
23 KOG0996 Structural maintenance 99.1 0.00019 4.1E-09 92.3 86.4 267 689-1005 779-1045(1293)
24 PRK01156 chromosome segregatio 99.1 0.00028 6.1E-09 93.4 73.0 11 832-842 529-539 (895)
25 PF12128 DUF3584: Protein of u 99.1 0.00043 9.3E-09 94.2 82.9 74 1044-1117 766-845 (1201)
26 PRK01156 chromosome segregatio 99.1 0.00034 7.4E-09 92.6 73.9 23 771-793 586-608 (895)
27 PF12128 DUF3584: Protein of u 99.0 0.00068 1.5E-08 92.3 89.7 64 645-708 606-669 (1201)
28 KOG0933 Structural maintenance 98.9 0.0009 1.9E-08 85.1 73.1 370 862-1294 672-1045(1174)
29 PRK04863 mukB cell division pr 98.9 0.0027 5.9E-08 87.1 89.7 130 706-855 989-1118(1486)
30 KOG0933 Structural maintenance 98.8 0.0019 4.2E-08 82.2 77.4 218 713-946 681-901 (1174)
31 PF05701 WEMBL: Weak chloropla 98.7 0.0036 7.7E-08 78.3 59.4 392 380-791 27-444 (522)
32 KOG0976 Rho/Rac1-interacting s 98.7 0.002 4.3E-08 79.8 48.6 402 832-1249 92-510 (1265)
33 KOG0964 Structural maintenance 98.7 0.0047 1E-07 78.6 81.0 142 824-994 666-807 (1200)
34 PF05701 WEMBL: Weak chloropla 98.6 0.0054 1.2E-07 76.7 59.7 248 839-1110 235-489 (522)
35 PRK04863 mukB cell division pr 98.5 0.021 4.5E-07 78.7 92.9 109 838-948 991-1099(1486)
36 KOG0976 Rho/Rac1-interacting s 98.4 0.015 3.2E-07 72.5 52.0 216 324-556 85-306 (1265)
37 KOG0964 Structural maintenance 98.4 0.023 5E-07 72.6 72.9 168 255-436 304-495 (1200)
38 PF00261 Tropomyosin: Tropomyo 98.4 0.00021 4.6E-09 80.4 28.5 219 381-613 2-220 (237)
39 KOG0971 Microtubule-associated 98.3 0.0031 6.6E-08 79.3 36.5 310 728-1072 229-548 (1243)
40 PF07888 CALCOCO1: Calcium bin 98.2 0.019 4E-07 71.1 41.1 25 454-478 305-329 (546)
41 KOG0994 Extracellular matrix g 98.2 0.077 1.7E-06 68.8 55.9 223 1016-1254 1520-1749(1758)
42 PF07888 CALCOCO1: Calcium bin 98.1 0.063 1.4E-06 66.5 44.0 25 811-835 378-402 (546)
43 KOG4643 Uncharacterized coiled 98.1 0.11 2.3E-06 67.1 49.2 174 771-946 407-594 (1195)
44 KOG4673 Transcription factor T 98.1 0.082 1.8E-06 65.5 60.3 155 447-601 340-499 (961)
45 PF05557 MAD: Mitotic checkpoi 98.0 2.6E-05 5.7E-10 100.7 13.1 118 830-950 501-626 (722)
46 PF00038 Filament: Intermediat 98.0 0.036 7.8E-07 64.7 37.5 103 669-788 49-151 (312)
47 PRK04778 septation ring format 98.0 0.11 2.4E-06 65.9 51.0 15 960-974 516-530 (569)
48 KOG0977 Nuclear envelope prote 98.0 0.016 3.4E-07 71.6 35.0 226 340-578 101-333 (546)
49 PF00038 Filament: Intermediat 98.0 0.032 7E-07 65.1 35.9 130 816-948 5-142 (312)
50 PF05483 SCP-1: Synaptonemal c 97.9 0.13 2.9E-06 64.1 81.4 170 381-564 114-284 (786)
51 KOG0977 Nuclear envelope prote 97.9 0.044 9.6E-07 67.8 37.0 175 398-593 39-221 (546)
52 KOG4643 Uncharacterized coiled 97.8 0.26 5.7E-06 63.8 52.7 215 786-1011 394-610 (1195)
53 KOG0963 Transcription factor/C 97.8 0.21 4.6E-06 62.1 39.6 244 673-961 65-323 (629)
54 KOG0994 Extracellular matrix g 97.7 0.4 8.6E-06 62.6 51.7 111 832-946 1450-1572(1758)
55 KOG0250 DNA repair protein RAD 97.7 0.43 9.4E-06 62.8 65.5 244 332-592 208-466 (1074)
56 PF05557 MAD: Mitotic checkpoi 97.7 0.0001 2.3E-09 95.2 9.7 41 1014-1054 606-646 (722)
57 PRK04778 septation ring format 97.7 0.41 8.9E-06 60.9 56.7 55 709-763 105-159 (569)
58 KOG0978 E3 ubiquitin ligase in 97.6 0.43 9.3E-06 60.9 60.4 191 822-1033 397-592 (698)
59 KOG1029 Endocytic adaptor prot 97.6 0.22 4.7E-06 62.7 35.5 130 472-601 362-497 (1118)
60 COG0419 SbcC ATPase involved i 97.6 0.68 1.5E-05 62.1 80.9 140 453-593 298-441 (908)
61 KOG4673 Transcription factor T 97.6 0.42 9.1E-06 59.6 60.5 340 230-614 402-756 (961)
62 PF05622 HOOK: HOOK protein; 97.6 1.7E-05 3.7E-10 102.2 0.0 179 832-1021 363-547 (713)
63 PRK11637 AmiB activator; Provi 97.5 0.04 8.7E-07 67.4 28.6 77 501-577 172-248 (428)
64 COG1340 Uncharacterized archae 97.5 0.18 3.8E-06 58.3 31.0 222 812-1045 17-238 (294)
65 COG0419 SbcC ATPase involved i 97.5 0.89 1.9E-05 61.0 78.9 32 1011-1042 583-614 (908)
66 KOG0250 DNA repair protein RAD 97.4 0.95 2.1E-05 59.8 67.6 162 895-1068 675-837 (1074)
67 PF13514 AAA_27: AAA domain 97.4 1.4 3.1E-05 60.4 91.2 257 981-1245 675-956 (1111)
68 PHA02562 46 endonuclease subun 97.3 0.066 1.4E-06 67.4 26.9 55 389-443 215-269 (562)
69 KOG0962 DNA repair protein RAD 97.1 2.4 5.1E-05 57.5 102.8 96 668-763 575-671 (1294)
70 PRK11637 AmiB activator; Provi 97.1 0.27 5.8E-06 60.3 28.3 15 350-364 52-66 (428)
71 PF09728 Taxilin: Myosin-like 97.1 1.1 2.4E-05 52.9 39.1 259 654-921 44-305 (309)
72 PF06160 EzrA: Septation ring 97.0 1.8 3.9E-05 55.1 51.6 210 873-1105 251-461 (560)
73 PF07111 HCR: Alpha helical co 97.0 1.8 3.8E-05 55.0 68.4 453 459-946 139-616 (739)
74 KOG0018 Structural maintenance 97.0 2.3 4.9E-05 56.2 73.2 50 1010-1059 964-1014(1141)
75 PF15070 GOLGA2L5: Putative go 97.0 2 4.3E-05 55.2 47.9 40 317-356 29-68 (617)
76 PF06160 EzrA: Septation ring 97.0 2 4.2E-05 54.8 56.7 143 454-601 144-296 (560)
77 PF13514 AAA_27: AAA domain 97.0 3.1 6.8E-05 57.2 88.8 103 902-1005 666-769 (1111)
78 PF05483 SCP-1: Synaptonemal c 96.9 2.2 4.8E-05 53.8 87.9 131 1045-1194 576-707 (786)
79 KOG0978 E3 ubiquitin ligase in 96.9 2.5 5.3E-05 54.4 65.1 165 857-1036 397-567 (698)
80 PF09726 Macoilin: Transmembra 96.9 0.79 1.7E-05 59.4 30.9 112 643-754 542-653 (697)
81 PF09728 Taxilin: Myosin-like 96.7 1.9 4.2E-05 50.9 38.3 95 650-744 213-307 (309)
82 PF12718 Tropomyosin_1: Tropom 96.7 0.14 3.1E-06 53.6 18.9 98 492-593 7-104 (143)
83 PF09726 Macoilin: Transmembra 96.6 1.2 2.6E-05 57.8 30.1 101 685-799 422-522 (697)
84 KOG1029 Endocytic adaptor prot 96.5 4.2 9E-05 52.0 34.4 30 503-532 321-350 (1118)
85 PF12718 Tropomyosin_1: Tropom 96.5 0.23 4.9E-06 52.2 18.6 96 502-601 3-98 (143)
86 PF05911 DUF869: Plant protein 96.4 5.5 0.00012 52.3 60.3 122 453-578 169-309 (769)
87 KOG4593 Mitotic checkpoint pro 96.4 4.6 0.0001 51.4 61.2 151 715-873 143-295 (716)
88 PF15070 GOLGA2L5: Putative go 96.2 6.3 0.00014 50.7 48.5 32 720-751 283-314 (617)
89 PF15619 Lebercilin: Ciliary p 96.2 2.8 6E-05 46.4 25.6 175 510-697 9-187 (194)
90 TIGR03185 DNA_S_dndD DNA sulfu 96.1 7 0.00015 50.7 36.3 69 1047-1117 389-457 (650)
91 COG1340 Uncharacterized archae 96.1 3.8 8.3E-05 47.7 37.1 11 732-742 237-247 (294)
92 KOG0995 Centromere-associated 96.1 5.7 0.00012 49.7 41.1 116 700-822 271-392 (581)
93 PF05622 HOOK: HOOK protein; 96.1 0.0015 3.1E-08 84.7 0.0 28 825-852 502-529 (713)
94 KOG4593 Mitotic checkpoint pro 96.1 7 0.00015 49.9 58.2 243 806-1058 362-644 (716)
95 PF05667 DUF812: Protein of un 96.0 7.4 0.00016 49.9 33.0 84 518-601 445-530 (594)
96 COG4942 Membrane-bound metallo 95.9 6.5 0.00014 48.0 28.8 88 513-600 161-248 (420)
97 KOG0946 ER-Golgi vesicle-tethe 95.7 5 0.00011 51.7 27.4 54 379-432 663-716 (970)
98 KOG0963 Transcription factor/C 95.6 9.6 0.00021 48.2 46.1 50 833-882 60-109 (629)
99 KOG0612 Rho-associated, coiled 95.6 14 0.0003 50.0 62.8 111 451-561 537-650 (1317)
100 KOG0018 Structural maintenance 95.6 13 0.00028 49.6 67.5 212 682-900 677-903 (1141)
101 KOG0999 Microtubule-associated 95.5 9.2 0.0002 47.4 71.3 29 1079-1107 551-579 (772)
102 PF14915 CCDC144C: CCDC144C pr 95.5 6.9 0.00015 45.5 37.8 210 672-916 4-228 (305)
103 PF15619 Lebercilin: Ciliary p 95.4 3.2 6.8E-05 45.9 22.0 29 408-436 47-75 (194)
104 PF09730 BicD: Microtubule-ass 95.2 16 0.00034 47.8 60.6 49 994-1042 420-468 (717)
105 KOG1003 Actin filament-coating 95.2 6.3 0.00014 43.2 23.9 154 455-608 30-183 (205)
106 KOG1003 Actin filament-coating 95.1 6.8 0.00015 43.0 26.9 157 532-702 2-158 (205)
107 COG1579 Zn-ribbon protein, pos 95.0 4.2 9E-05 46.3 22.1 126 496-621 14-141 (239)
108 PF04849 HAP1_N: HAP1 N-termin 95.0 7.7 0.00017 45.6 24.4 203 516-749 86-302 (306)
109 KOG0995 Centromere-associated 94.9 15 0.00032 46.2 42.6 76 361-436 240-315 (581)
110 PF15450 DUF4631: Domain of un 94.8 15 0.00033 45.7 54.4 130 737-896 240-373 (531)
111 PF05911 DUF869: Plant protein 94.7 22 0.00047 47.0 60.6 100 1141-1241 649-759 (769)
112 PF10473 CENP-F_leu_zip: Leuci 94.6 3.5 7.6E-05 43.3 18.7 105 837-941 8-112 (140)
113 COG1579 Zn-ribbon protein, pos 94.4 8.1 0.00018 44.0 22.3 78 663-740 34-113 (239)
114 COG4372 Uncharacterized protei 94.3 16 0.00034 43.8 28.2 192 383-588 77-271 (499)
115 PF05667 DUF812: Protein of un 94.3 23 0.0005 45.6 31.4 256 645-941 327-589 (594)
116 TIGR03185 DNA_S_dndD DNA sulfu 94.2 25 0.00054 45.8 37.8 18 960-977 504-521 (650)
117 PF09730 BicD: Microtubule-ass 94.2 26 0.00056 45.9 65.0 172 704-878 267-465 (717)
118 PF14662 CCDC155: Coiled-coil 94.0 12 0.00025 41.3 24.5 50 387-436 8-57 (193)
119 KOG0946 ER-Golgi vesicle-tethe 94.0 27 0.00059 45.5 32.0 18 989-1006 946-963 (970)
120 COG4942 Membrane-bound metallo 93.8 21 0.00047 43.7 30.6 55 693-747 187-241 (420)
121 PF14662 CCDC155: Coiled-coil 93.3 15 0.00033 40.4 26.3 31 672-702 121-151 (193)
122 PRK09039 hypothetical protein; 93.3 4.2 9E-05 48.8 18.7 44 481-524 63-106 (343)
123 PF10473 CENP-F_leu_zip: Leuci 93.3 13 0.00027 39.3 20.4 92 653-744 17-108 (140)
124 PRK09039 hypothetical protein; 93.2 5.9 0.00013 47.5 19.8 23 477-499 73-95 (343)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.2 5.8 0.00013 41.1 17.3 123 1138-1260 4-129 (132)
126 PF09789 DUF2353: Uncharacteri 92.9 21 0.00044 42.5 23.0 205 388-601 10-221 (319)
127 COG4026 Uncharacterized protei 92.8 1.3 2.9E-05 48.9 12.2 104 312-436 107-212 (290)
128 TIGR00634 recN DNA repair prot 91.8 15 0.00032 47.1 21.9 106 1161-1267 265-370 (563)
129 PF07111 HCR: Alpha helical co 91.7 51 0.0011 42.6 69.9 154 816-975 430-595 (739)
130 PF09789 DUF2353: Uncharacteri 91.3 32 0.0007 40.9 22.1 204 905-1115 2-216 (319)
131 COG3883 Uncharacterized protei 91.1 35 0.00077 39.5 28.6 23 566-588 70-92 (265)
132 KOG0999 Microtubule-associated 90.9 52 0.0011 41.2 63.5 126 476-601 48-174 (772)
133 KOG0612 Rho-associated, coiled 90.6 84 0.0018 43.0 67.0 89 778-872 699-788 (1317)
134 PF08614 ATG16: Autophagy prot 90.5 2.3 5.1E-05 46.7 11.5 112 490-601 72-183 (194)
135 PRK10246 exonuclease subunit S 90.3 92 0.002 43.1 81.7 45 756-800 754-798 (1047)
136 PF06008 Laminin_I: Laminin Do 90.0 42 0.00092 38.7 27.3 42 1225-1266 216-257 (264)
137 PF06008 Laminin_I: Laminin Do 88.8 51 0.0011 38.0 31.5 26 715-740 226-251 (264)
138 PF13851 GAS: Growth-arrest sp 88.6 45 0.00099 37.2 23.3 140 650-796 31-174 (201)
139 PF09787 Golgin_A5: Golgin sub 87.7 91 0.002 39.6 31.4 54 1060-1115 366-419 (511)
140 TIGR03007 pepcterm_ChnLen poly 87.4 45 0.00098 41.7 21.2 19 257-275 167-185 (498)
141 KOG0971 Microtubule-associated 87.1 1.2E+02 0.0026 40.4 80.1 109 1129-1261 940-1051(1243)
142 TIGR03007 pepcterm_ChnLen poly 87.1 92 0.002 39.0 24.1 23 517-539 165-187 (498)
143 PF12795 MscS_porin: Mechanose 86.6 64 0.0014 36.7 20.6 85 509-593 81-174 (240)
144 PRK10246 exonuclease subunit S 86.5 1.5E+02 0.0033 41.0 78.4 21 861-881 778-798 (1047)
145 PF13851 GAS: Growth-arrest sp 86.5 60 0.0013 36.2 22.4 45 963-1007 126-171 (201)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.2 45 0.00098 34.6 18.8 33 767-799 93-125 (132)
147 COG5185 HEC1 Protein involved 86.1 98 0.0021 38.4 38.8 148 664-815 261-418 (622)
148 PF08317 Spc7: Spc7 kinetochor 85.8 86 0.0019 37.4 29.3 25 555-579 75-99 (325)
149 PRK11281 hypothetical protein; 85.8 1.7E+02 0.0036 40.8 38.4 119 280-398 126-252 (1113)
150 PF09787 Golgin_A5: Golgin sub 85.2 1.2E+02 0.0026 38.6 36.7 49 968-1017 183-231 (511)
151 PRK10869 recombination and rep 85.1 1.3E+02 0.0027 38.8 25.8 107 1160-1267 259-365 (553)
152 TIGR01005 eps_transp_fam exopo 84.8 1.5E+02 0.0033 39.4 25.0 35 507-541 188-222 (754)
153 TIGR01010 BexC_CtrB_KpsE polys 84.8 98 0.0021 37.2 21.8 107 1160-1267 175-295 (362)
154 KOG0249 LAR-interacting protei 84.7 68 0.0015 41.5 19.9 129 770-907 110-256 (916)
155 PRK09841 cryptic autophosphory 84.5 77 0.0017 42.0 21.9 107 1160-1267 272-387 (726)
156 PRK10929 putative mechanosensi 84.4 1.9E+02 0.0041 40.2 40.1 16 474-489 147-162 (1109)
157 KOG1853 LIS1-interacting prote 83.7 58 0.0012 37.2 16.9 63 303-365 52-121 (333)
158 PF12325 TMF_TATA_bd: TATA ele 83.5 32 0.00069 35.4 13.9 49 1076-1124 11-59 (120)
159 KOG1937 Uncharacterized conser 83.4 1.3E+02 0.0027 37.3 33.5 127 468-601 297-428 (521)
160 TIGR01843 type_I_hlyD type I s 82.9 1.2E+02 0.0026 36.7 22.9 25 568-592 143-167 (423)
161 COG4477 EzrA Negative regulato 82.9 1.4E+02 0.0031 37.7 47.3 83 508-590 99-185 (570)
162 PF08614 ATG16: Autophagy prot 82.8 8.6 0.00019 42.4 10.4 100 511-610 72-171 (194)
163 PF15397 DUF4618: Domain of un 82.7 1E+02 0.0022 35.8 26.8 157 706-891 64-224 (258)
164 PF10498 IFT57: Intra-flagella 82.2 64 0.0014 39.2 18.1 160 1055-1250 190-356 (359)
165 smart00787 Spc7 Spc7 kinetocho 81.5 53 0.0012 39.1 16.9 51 482-532 148-198 (312)
166 PF00769 ERM: Ezrin/radixin/mo 81.4 54 0.0012 37.7 16.5 64 830-893 10-73 (246)
167 TIGR03017 EpsF chain length de 81.4 1.4E+02 0.0031 36.7 21.9 16 1330-1345 399-414 (444)
168 PF13870 DUF4201: Domain of un 81.4 85 0.0018 34.0 22.2 165 976-1158 3-173 (177)
169 PF04849 HAP1_N: HAP1 N-termin 80.6 1.3E+02 0.0029 35.7 27.1 58 699-756 231-288 (306)
170 PF05010 TACC: Transforming ac 80.6 1.1E+02 0.0023 34.6 28.1 41 723-763 147-187 (207)
171 PRK11519 tyrosine kinase; Prov 79.7 1.1E+02 0.0024 40.5 20.7 51 1216-1267 334-387 (719)
172 PF12325 TMF_TATA_bd: TATA ele 78.8 51 0.0011 34.0 13.5 27 454-480 69-95 (120)
173 KOG4360 Uncharacterized coiled 78.6 1.8E+02 0.0038 36.7 19.9 132 862-1000 161-296 (596)
174 PRK10929 putative mechanosensi 78.5 2.9E+02 0.0063 38.5 41.1 16 1110-1125 692-707 (1109)
175 PF10168 Nup88: Nuclear pore c 78.5 64 0.0014 42.7 17.7 104 106-212 567-670 (717)
176 PF09755 DUF2046: Uncharacteri 78.5 1.5E+02 0.0033 35.2 33.3 44 926-969 225-268 (310)
177 PF10481 CENP-F_N: Cenp-F N-te 78.3 45 0.00097 38.6 14.0 96 476-575 16-115 (307)
178 PF14915 CCDC144C: CCDC144C pr 77.0 1.6E+02 0.0035 34.7 39.1 33 706-738 211-243 (305)
179 PRK10698 phage shock protein P 75.9 1.5E+02 0.0032 33.7 22.1 64 1130-1193 85-151 (222)
180 PF10212 TTKRSYEDQ: Predicted 75.8 1.7E+02 0.0036 37.1 19.1 107 823-942 405-513 (518)
181 KOG2911 Uncharacterized conser 75.8 1.2E+02 0.0026 37.4 17.4 150 1076-1234 228-382 (439)
182 smart00787 Spc7 Spc7 kinetocho 75.8 1.8E+02 0.004 34.7 28.7 88 653-740 172-263 (312)
183 KOG0804 Cytoplasmic Zn-finger 75.5 79 0.0017 39.0 15.7 114 478-601 339-453 (493)
184 PRK11281 hypothetical protein; 75.3 3.5E+02 0.0076 37.8 41.1 87 832-918 156-250 (1113)
185 PF15066 CAGE1: Cancer-associa 74.9 2.3E+02 0.0049 35.4 23.0 181 1051-1256 319-505 (527)
186 PRK10869 recombination and rep 74.5 2.6E+02 0.0057 36.0 25.1 123 924-1072 262-386 (553)
187 KOG1937 Uncharacterized conser 74.4 2.3E+02 0.005 35.2 31.1 117 834-950 295-430 (521)
188 COG1842 PspA Phage shock prote 73.4 1.7E+02 0.0037 33.3 22.0 143 770-916 22-180 (225)
189 TIGR00634 recN DNA repair prot 72.9 2.9E+02 0.0062 35.6 25.3 59 816-878 149-207 (563)
190 TIGR01005 eps_transp_fam exopo 71.8 3.4E+02 0.0074 36.1 26.0 27 501-527 196-222 (754)
191 PF10168 Nup88: Nuclear pore c 71.7 3.5E+02 0.0075 36.1 22.0 113 1141-1259 597-715 (717)
192 PF15450 DUF4631: Domain of un 70.4 3E+02 0.0066 34.9 56.6 38 726-763 408-445 (531)
193 KOG4807 F-actin binding protei 70.0 2.6E+02 0.0057 34.0 24.3 130 1045-1181 287-440 (593)
194 PF08317 Spc7: Spc7 kinetochor 70.0 2.5E+02 0.0053 33.7 27.6 103 985-1093 183-285 (325)
195 PF09304 Cortex-I_coil: Cortex 69.2 95 0.0021 31.4 12.2 65 863-927 12-76 (107)
196 KOG1850 Myosin-like coiled-coi 69.2 2.5E+02 0.0054 33.5 36.0 113 650-762 219-331 (391)
197 KOG0804 Cytoplasmic Zn-finger 68.4 1.3E+02 0.0027 37.4 15.3 25 892-916 351-375 (493)
198 PF11559 ADIP: Afadin- and alp 68.3 1.6E+02 0.0035 31.0 15.4 91 853-946 59-149 (151)
199 PF10146 zf-C4H2: Zinc finger- 68.1 97 0.0021 35.4 13.8 87 357-443 9-95 (230)
200 PF00769 ERM: Ezrin/radixin/mo 66.7 1.6E+02 0.0035 33.9 15.5 64 380-443 40-103 (246)
201 KOG0249 LAR-interacting protei 65.0 4.4E+02 0.0095 34.7 19.7 75 398-480 95-169 (916)
202 PF04111 APG6: Autophagy prote 64.6 73 0.0016 37.9 12.6 68 849-916 46-113 (314)
203 TIGR01000 bacteriocin_acc bact 64.2 3.7E+02 0.008 33.6 22.3 7 518-524 217-223 (457)
204 PF10146 zf-C4H2: Zinc finger- 64.1 1.3E+02 0.0027 34.5 13.7 88 858-945 16-103 (230)
205 PRK09343 prefoldin subunit bet 64.1 70 0.0015 32.8 10.8 101 1167-1267 5-109 (121)
206 PF04912 Dynamitin: Dynamitin 63.9 3.5E+02 0.0075 33.2 20.8 27 375-401 89-115 (388)
207 COG3074 Uncharacterized protei 63.7 42 0.00091 31.2 7.8 62 807-889 7-68 (79)
208 COG1842 PspA Phage shock prote 63.0 2.8E+02 0.006 31.7 22.5 153 341-500 55-219 (225)
209 PRK10884 SH3 domain-containing 62.9 60 0.0013 36.4 10.8 53 831-886 92-144 (206)
210 PF10498 IFT57: Intra-flagella 62.4 1.8E+02 0.0039 35.4 15.4 115 935-1067 239-353 (359)
211 PF14073 Cep57_CLD: Centrosome 62.2 2.5E+02 0.0054 31.0 20.0 94 829-922 61-154 (178)
212 PF07106 TBPIP: Tat binding pr 62.1 88 0.0019 33.6 11.7 64 1044-1109 74-137 (169)
213 PF06005 DUF904: Protein of un 62.0 61 0.0013 30.5 8.9 64 862-925 6-69 (72)
214 COG4477 EzrA Negative regulato 61.5 4.5E+02 0.0097 33.6 43.4 251 978-1267 254-513 (570)
215 PF06818 Fez1: Fez1; InterPro 61.4 2.8E+02 0.006 31.2 18.6 51 1160-1210 136-186 (202)
216 KOG1853 LIS1-interacting prote 60.8 3.1E+02 0.0068 31.6 18.2 114 869-995 54-167 (333)
217 PF10234 Cluap1: Clusterin-ass 60.6 3.4E+02 0.0073 31.9 16.8 91 1126-1216 157-258 (267)
218 PF14197 Cep57_CLD_2: Centroso 60.3 58 0.0013 30.4 8.4 61 858-918 3-63 (69)
219 PF04912 Dynamitin: Dynamitin 59.2 4.1E+02 0.009 32.5 22.8 146 827-991 241-387 (388)
220 PF04582 Reo_sigmaC: Reovirus 59.0 14 0.00031 43.8 5.3 97 511-607 54-150 (326)
221 PF12795 MscS_porin: Mechanose 58.5 3.2E+02 0.007 31.1 21.9 25 501-525 40-64 (240)
222 PF10481 CENP-F_N: Cenp-F N-te 57.7 3.7E+02 0.0081 31.5 16.2 119 622-751 7-130 (307)
223 PF09744 Jnk-SapK_ap_N: JNK_SA 57.1 2.9E+02 0.0062 30.0 14.5 79 918-1006 38-116 (158)
224 PRK15178 Vi polysaccharide exp 57.0 4.9E+02 0.011 32.7 19.2 86 1160-1246 247-338 (434)
225 PF13863 DUF4200: Domain of un 56.9 2.3E+02 0.0049 28.7 13.8 96 1166-1262 11-107 (126)
226 PF04582 Reo_sigmaC: Reovirus 56.5 17 0.00038 43.1 5.4 110 827-936 44-153 (326)
227 PRK10884 SH3 domain-containing 56.5 1.4E+02 0.0031 33.5 12.3 19 514-532 94-112 (206)
228 PF04012 PspA_IM30: PspA/IM30 56.4 3.3E+02 0.0071 30.4 21.7 52 361-415 14-65 (221)
229 PF05266 DUF724: Protein of un 55.4 1.9E+02 0.0041 32.2 12.9 71 363-433 114-184 (190)
230 PF06818 Fez1: Fez1; InterPro 55.3 3.5E+02 0.0076 30.5 19.6 17 659-675 155-171 (202)
231 PF04012 PspA_IM30: PspA/IM30 55.2 3.4E+02 0.0074 30.3 22.1 110 300-425 27-136 (221)
232 cd07623 BAR_SNX1_2 The Bin/Amp 54.9 3.6E+02 0.0078 30.5 24.5 172 1026-1199 10-186 (224)
233 PLN02939 transferase, transfer 54.5 7.6E+02 0.016 34.1 25.5 197 862-1072 130-340 (977)
234 TIGR02977 phageshock_pspA phag 54.4 3.6E+02 0.0078 30.4 19.6 62 461-522 14-75 (219)
235 KOG2129 Uncharacterized conser 53.4 5.2E+02 0.011 31.9 19.2 92 853-950 165-273 (552)
236 PF11559 ADIP: Afadin- and alp 53.0 3E+02 0.0065 29.0 17.7 30 1171-1200 117-146 (151)
237 PF06705 SF-assemblin: SF-asse 52.8 4.1E+02 0.0088 30.5 29.3 83 767-852 29-112 (247)
238 KOG1899 LAR transmembrane tyro 52.3 6.5E+02 0.014 32.7 18.7 132 332-480 126-265 (861)
239 PF13870 DUF4201: Domain of un 52.3 3.4E+02 0.0074 29.4 23.1 157 1096-1252 7-175 (177)
240 COG4026 Uncharacterized protei 52.0 81 0.0018 35.5 9.2 74 845-918 134-207 (290)
241 PF05266 DUF724: Protein of un 51.4 3.7E+02 0.0079 30.0 14.3 111 490-601 67-177 (190)
242 PF03962 Mnd1: Mnd1 family; I 50.5 3E+02 0.0065 30.5 13.5 63 1190-1253 103-166 (188)
243 KOG4809 Rab6 GTPase-interactin 49.9 6.7E+02 0.015 32.1 38.6 77 506-582 331-407 (654)
244 PF08826 DMPK_coil: DMPK coile 49.1 1.7E+02 0.0037 26.8 9.2 56 364-419 2-57 (61)
245 TIGR03017 EpsF chain length de 48.5 6.1E+02 0.013 31.2 25.8 32 511-542 169-200 (444)
246 PF14197 Cep57_CLD_2: Centroso 47.8 1.8E+02 0.0039 27.2 9.5 61 517-577 2-62 (69)
247 PF07889 DUF1664: Protein of u 47.7 2E+02 0.0044 30.0 10.8 21 481-501 46-66 (126)
248 PF10046 BLOC1_2: Biogenesis o 47.5 2.9E+02 0.0064 27.3 11.7 81 854-935 8-88 (99)
249 KOG4438 Centromere-associated 47.1 6.6E+02 0.014 31.3 36.0 57 705-763 336-392 (446)
250 PF14282 FlxA: FlxA-like prote 46.5 88 0.0019 31.4 7.9 60 1055-1114 18-77 (106)
251 TIGR02338 gimC_beta prefoldin, 46.4 2E+02 0.0043 28.9 10.5 72 1195-1266 32-104 (110)
252 PF10212 TTKRSYEDQ: Predicted 45.8 3.3E+02 0.0071 34.7 14.1 97 336-435 418-514 (518)
253 PF10186 Atg14: UV radiation r 45.5 5.3E+02 0.011 29.7 17.5 12 859-870 62-73 (302)
254 KOG1899 LAR transmembrane tyro 45.1 8.3E+02 0.018 31.8 20.4 33 720-752 278-310 (861)
255 COG5336 Uncharacterized protei 44.7 14 0.00031 37.0 2.0 22 1324-1346 42-67 (116)
256 COG5185 HEC1 Protein involved 44.6 7.5E+02 0.016 31.2 35.8 72 365-436 280-351 (622)
257 COG2433 Uncharacterized conser 44.5 3.1E+02 0.0068 35.4 13.7 29 565-593 477-505 (652)
258 COG2433 Uncharacterized conser 44.5 3.9E+02 0.0085 34.6 14.5 20 832-851 422-441 (652)
259 cd00632 Prefoldin_beta Prefold 43.5 1.9E+02 0.0042 28.7 9.8 40 1225-1264 59-98 (105)
260 PF01920 Prefoldin_2: Prefoldi 43.1 97 0.0021 30.1 7.6 73 1196-1269 28-102 (106)
261 KOG0979 Structural maintenance 43.0 1.1E+03 0.024 32.6 63.1 184 376-588 162-351 (1072)
262 PF13863 DUF4200: Domain of un 41.6 3.9E+02 0.0084 27.0 15.3 97 335-434 11-107 (126)
263 cd07664 BAR_SNX2 The Bin/Amphi 41.6 6E+02 0.013 29.2 20.8 104 246-358 24-129 (234)
264 PF09325 Vps5: Vps5 C terminal 40.7 5.5E+02 0.012 28.6 23.9 49 1025-1073 21-69 (236)
265 PF00901 Orbi_VP5: Orbivirus o 40.6 8.8E+02 0.019 30.8 16.5 139 46-206 58-208 (508)
266 PF05278 PEARLI-4: Arabidopsis 40.2 2E+02 0.0043 33.7 10.4 72 845-916 192-263 (269)
267 TIGR02338 gimC_beta prefoldin, 39.5 4.1E+02 0.0089 26.7 12.2 32 707-738 72-103 (110)
268 PF08647 BRE1: BRE1 E3 ubiquit 39.0 3.9E+02 0.0085 26.3 12.1 65 340-404 5-69 (96)
269 PF09755 DUF2046: Uncharacteri 38.0 7.9E+02 0.017 29.5 36.5 115 678-795 153-284 (310)
270 PF08826 DMPK_coil: DMPK coile 37.9 3.3E+02 0.0071 25.1 9.8 41 561-601 17-57 (61)
271 PF06120 Phage_HK97_TLTM: Tail 37.9 7.8E+02 0.017 29.5 18.0 161 231-458 42-202 (301)
272 COG3074 Uncharacterized protei 37.3 3.6E+02 0.0078 25.4 10.0 45 554-598 24-68 (79)
273 PF07106 TBPIP: Tat binding pr 37.3 1.5E+02 0.0032 32.0 8.5 10 484-493 20-29 (169)
274 PF05276 SH3BP5: SH3 domain-bi 37.2 7.1E+02 0.015 28.8 23.2 202 862-1090 9-221 (239)
275 PF02050 FliJ: Flagellar FliJ 37.1 3.9E+02 0.0086 25.8 12.2 47 1220-1267 44-90 (123)
276 PF06785 UPF0242: Uncharacteri 36.9 8.4E+02 0.018 29.5 16.5 69 832-900 85-153 (401)
277 KOG0980 Actin-binding protein 35.7 1.3E+03 0.028 31.4 47.1 64 1160-1223 749-825 (980)
278 PF10267 Tmemb_cc2: Predicted 35.6 5.6E+02 0.012 31.8 13.8 100 473-589 214-318 (395)
279 PF13908 Shisa: Wnt and FGF in 35.4 25 0.00053 38.2 2.3 23 1324-1346 78-100 (179)
280 PF04102 SlyX: SlyX; InterPro 35.4 1.6E+02 0.0035 27.2 7.3 48 542-589 5-52 (69)
281 PF10205 KLRAQ: Predicted coil 35.4 4.9E+02 0.011 26.4 11.3 69 681-749 5-73 (102)
282 KOG3647 Predicted coiled-coil 35.1 8E+02 0.017 28.8 14.8 146 1160-1312 110-266 (338)
283 PRK04406 hypothetical protein; 34.8 2.5E+02 0.0054 26.7 8.5 9 571-579 41-49 (75)
284 PRK10698 phage shock protein P 34.5 7.4E+02 0.016 28.2 20.7 78 710-790 107-184 (222)
285 TIGR02977 phageshock_pspA phag 34.4 7.2E+02 0.016 28.0 22.5 104 319-424 33-136 (219)
286 PRK09841 cryptic autophosphory 34.3 7.4E+02 0.016 33.0 15.9 17 516-532 314-330 (726)
287 PF10234 Cluap1: Clusterin-ass 34.2 8.4E+02 0.018 28.7 16.1 60 835-894 172-238 (267)
288 KOG2629 Peroxisomal membrane a 34.0 2.6E+02 0.0056 33.0 10.0 43 1225-1267 157-199 (300)
289 TIGR01010 BexC_CtrB_KpsE polys 33.3 6.6E+02 0.014 30.2 14.1 88 306-393 173-262 (362)
290 KOG1962 B-cell receptor-associ 32.7 4.2E+02 0.0091 30.2 11.2 51 900-950 149-199 (216)
291 cd07665 BAR_SNX1 The Bin/Amphi 32.5 8.3E+02 0.018 28.2 20.7 73 245-317 23-97 (234)
292 cd07627 BAR_Vps5p The Bin/Amph 32.3 7.6E+02 0.017 27.7 25.2 160 1030-1189 6-177 (216)
293 cd07666 BAR_SNX7 The Bin/Amphi 31.6 8.7E+02 0.019 28.1 21.9 165 821-1001 50-233 (243)
294 PF12777 MT: Microtubule-bindi 31.5 1E+03 0.022 28.8 23.3 42 332-373 9-50 (344)
295 PF05384 DegS: Sensor protein 31.3 7.1E+02 0.015 27.1 19.7 135 897-1072 22-156 (159)
296 PF14073 Cep57_CLD: Centrosome 31.2 7.7E+02 0.017 27.4 21.1 93 501-593 59-151 (178)
297 TIGR02473 flagell_FliJ flagell 30.5 6E+02 0.013 25.9 14.5 48 1219-1267 59-106 (141)
298 TIGR02680 conserved hypothetic 30.2 1.9E+03 0.041 31.7 69.2 562 319-914 225-989 (1353)
299 PRK01844 hypothetical protein; 30.0 41 0.00088 31.6 2.4 14 1336-1349 15-28 (72)
300 PF15035 Rootletin: Ciliary ro 29.9 8E+02 0.017 27.2 18.6 78 1160-1240 100-177 (182)
301 PF10205 KLRAQ: Predicted coil 29.8 5.1E+02 0.011 26.3 9.9 64 546-609 3-66 (102)
302 PF15102 TMEM154: TMEM154 prot 29.5 29 0.00063 36.8 1.5 19 1330-1348 66-84 (146)
303 PRK10361 DNA recombination pro 29.5 1.3E+03 0.028 29.4 22.3 65 420-494 58-122 (475)
304 cd00890 Prefoldin Prefoldin is 29.3 6E+02 0.013 25.5 12.4 38 1179-1216 5-42 (129)
305 PLN02939 transferase, transfer 29.0 1.7E+03 0.038 30.8 29.2 132 650-791 254-395 (977)
306 PF07798 DUF1640: Protein of u 28.9 7.9E+02 0.017 26.8 18.2 131 1024-1178 19-154 (177)
307 PF02403 Seryl_tRNA_N: Seryl-t 28.6 5.8E+02 0.013 25.2 10.8 46 753-799 11-56 (108)
308 cd07665 BAR_SNX1 The Bin/Amphi 28.6 9.5E+02 0.021 27.7 25.2 170 1025-1196 19-193 (234)
309 KOG0982 Centrosomal protein Nu 28.6 1.3E+03 0.027 29.0 23.4 26 576-601 297-322 (502)
310 PHA01750 hypothetical protein 28.5 3.9E+02 0.0085 24.9 8.1 34 1227-1260 40-73 (75)
311 cd00632 Prefoldin_beta Prefold 27.6 6.2E+02 0.013 25.1 12.3 29 716-744 70-98 (105)
312 PF07889 DUF1664: Protein of u 27.6 6.7E+02 0.015 26.3 10.9 19 572-590 99-117 (126)
313 PF03962 Mnd1: Mnd1 family; I 27.5 5.9E+02 0.013 28.2 11.3 90 1013-1110 68-157 (188)
314 PF12777 MT: Microtubule-bindi 27.1 1.2E+03 0.025 28.2 19.2 89 858-946 219-307 (344)
315 cd07660 BAR_Arfaptin The Bin/A 27.1 9.5E+02 0.021 27.1 20.6 62 1164-1228 136-198 (201)
316 PF05384 DegS: Sensor protein 26.9 8.5E+02 0.018 26.5 20.6 49 510-558 24-72 (159)
317 PF10368 YkyA: Putative cell-w 26.8 9.4E+02 0.02 27.0 19.6 150 965-1114 18-190 (204)
318 KOG0972 Huntingtin interacting 26.8 1.1E+03 0.025 27.9 16.0 123 1124-1250 238-363 (384)
319 PF09738 DUF2051: Double stran 26.6 1E+03 0.022 28.5 13.6 30 658-687 217-246 (302)
320 PRK04325 hypothetical protein; 26.3 3.7E+02 0.008 25.4 8.0 18 565-582 33-50 (74)
321 PF04728 LPP: Lipoprotein leuc 26.0 2.5E+02 0.0053 25.5 6.3 42 892-933 7-48 (56)
322 PRK04406 hypothetical protein; 26.0 4.1E+02 0.009 25.3 8.3 25 564-588 27-51 (75)
323 PF05377 FlaC_arch: Flagella a 25.7 2.2E+02 0.0047 25.7 5.9 39 98-136 1-39 (55)
324 TIGR02894 DNA_bind_RsfA transc 25.6 7.9E+02 0.017 26.8 11.2 127 784-928 16-151 (161)
325 PF15290 Syntaphilin: Golgi-lo 25.6 7.9E+02 0.017 29.1 11.8 92 354-445 63-165 (305)
326 PF15188 CCDC-167: Coiled-coil 25.5 2.3E+02 0.0049 27.7 6.6 64 378-441 3-69 (85)
327 PF08172 CASP_C: CASP C termin 25.4 8.6E+02 0.019 28.2 12.5 56 537-592 82-137 (248)
328 PF12761 End3: Actin cytoskele 25.4 1.9E+02 0.0041 32.4 6.8 99 255-365 93-194 (195)
329 PRK10132 hypothetical protein; 24.9 62 0.0013 32.8 2.8 15 1334-1348 93-107 (108)
330 PF04949 Transcrip_act: Transc 24.6 9.1E+02 0.02 26.1 15.7 90 714-803 54-143 (159)
331 PF11180 DUF2968: Protein of u 24.6 8.9E+02 0.019 27.2 11.6 63 533-595 118-180 (192)
332 PF15397 DUF4618: Domain of un 24.4 1.2E+03 0.026 27.4 27.4 33 1229-1261 186-218 (258)
333 PF12240 Angiomotin_C: Angiomo 24.4 7.6E+02 0.017 27.9 11.1 146 357-524 4-154 (205)
334 PRK10404 hypothetical protein; 24.1 67 0.0014 32.1 2.9 23 1321-1348 79-101 (101)
335 PF14988 DUF4515: Domain of un 24.1 1.1E+03 0.023 26.7 23.5 49 1209-1258 150-199 (206)
336 PF14712 Snapin_Pallidin: Snap 24.0 6.5E+02 0.014 24.1 11.0 77 518-595 12-90 (92)
337 KOG0288 WD40 repeat protein Ti 23.9 1.3E+03 0.029 28.7 13.8 102 496-597 10-111 (459)
338 PRK00736 hypothetical protein; 23.9 4.4E+02 0.0094 24.6 7.9 13 570-582 34-46 (68)
339 PF05624 LSR: Lipolysis stimul 23.7 67 0.0014 27.7 2.3 17 1329-1345 7-23 (49)
340 PF04728 LPP: Lipoprotein leuc 23.6 5.2E+02 0.011 23.5 7.9 43 559-601 7-49 (56)
341 TIGR01000 bacteriocin_acc bact 23.5 1.5E+03 0.033 28.2 23.3 8 718-725 300-307 (457)
342 PLN03188 kinesin-12 family pro 23.5 2.3E+03 0.051 30.5 20.7 42 454-495 1201-1242(1320)
343 KOG1850 Myosin-like coiled-coi 23.4 1.4E+03 0.029 27.7 33.2 56 831-887 38-93 (391)
344 COG3206 GumC Uncharacterized p 23.2 1.5E+03 0.033 28.2 24.7 31 1160-1190 304-334 (458)
345 PF05957 DUF883: Bacterial pro 23.1 73 0.0016 31.0 2.9 15 1334-1348 80-94 (94)
346 PRK00846 hypothetical protein; 23.0 5E+02 0.011 25.0 8.2 22 564-585 36-57 (77)
347 PRK00523 hypothetical protein; 23.0 42 0.00091 31.6 1.1 15 1335-1349 15-29 (72)
348 PF02403 Seryl_tRNA_N: Seryl-t 23.0 7.4E+02 0.016 24.4 11.6 63 1191-1255 37-100 (108)
349 PF09738 DUF2051: Double stran 22.8 1.4E+03 0.029 27.5 14.1 44 654-697 85-128 (302)
350 TIGR03752 conj_TIGR03752 integ 22.7 4.1E+02 0.0089 33.5 9.7 92 759-850 46-141 (472)
351 PF02183 HALZ: Homeobox associ 22.6 1.6E+02 0.0035 25.3 4.5 40 871-910 2-41 (45)
352 PRK01844 hypothetical protein; 22.5 42 0.00091 31.6 1.0 21 1326-1346 1-21 (72)
353 PRK13734 conjugal transfer pil 22.4 49 0.0011 33.3 1.6 18 1327-1344 97-114 (120)
354 PF11021 DUF2613: Protein of u 22.4 53 0.0011 29.6 1.6 15 1332-1346 5-19 (56)
355 PF12761 End3: Actin cytoskele 22.3 3.2E+02 0.0069 30.7 7.8 42 826-867 97-142 (195)
356 KOG0980 Actin-binding protein 22.2 2.1E+03 0.046 29.5 50.3 92 965-1065 717-814 (980)
357 TIGR02231 conserved hypothetic 22.1 5E+02 0.011 33.0 10.9 48 388-435 125-172 (525)
358 cd07664 BAR_SNX2 The Bin/Amphi 22.1 1.2E+03 0.027 26.7 25.2 165 1025-1191 19-195 (234)
359 KOG1655 Protein involved in va 21.9 1.2E+03 0.025 26.4 14.5 39 811-852 15-53 (218)
360 PRK13729 conjugal transfer pil 21.9 2.7E+02 0.0059 35.1 8.0 54 379-432 68-121 (475)
361 PF15372 DUF4600: Domain of un 21.8 7.7E+02 0.017 26.0 10.0 81 829-914 15-105 (129)
362 KOG0979 Structural maintenance 21.7 2.3E+03 0.05 29.7 63.0 107 634-740 250-356 (1072)
363 PF05335 DUF745: Protein of un 21.7 1.1E+03 0.025 26.2 16.0 94 529-622 69-162 (188)
364 KOG4460 Nuclear pore complex, 21.6 1.8E+03 0.04 28.5 15.9 33 630-662 667-703 (741)
365 PF06810 Phage_GP20: Phage min 21.4 6.8E+02 0.015 26.9 10.0 29 513-541 20-48 (155)
366 PF10393 Matrilin_ccoil: Trime 21.4 2.2E+02 0.0047 24.9 5.0 32 961-995 15-46 (47)
367 KOG4603 TBP-1 interacting prot 21.4 3.8E+02 0.0083 29.4 7.8 65 1044-1110 81-145 (201)
368 PRK09343 prefoldin subunit bet 21.4 9E+02 0.02 24.8 13.3 40 1086-1125 5-44 (121)
369 KOG3647 Predicted coiled-coil 21.2 1.4E+03 0.03 27.0 13.8 65 827-891 100-178 (338)
370 PF03357 Snf7: Snf7; InterPro 21.2 4.3E+02 0.0094 27.8 8.6 31 1129-1159 40-70 (171)
371 PF08581 Tup_N: Tup N-terminal 21.2 7.5E+02 0.016 23.9 11.8 76 1092-1174 1-76 (79)
372 PF05377 FlaC_arch: Flagella a 21.1 3.1E+02 0.0067 24.8 6.0 37 377-413 4-40 (55)
373 PF10805 DUF2730: Protein of u 21.0 5.7E+02 0.012 25.7 8.8 50 515-564 37-88 (106)
374 PLN03229 acetyl-coenzyme A car 20.9 2.1E+03 0.046 29.1 20.7 73 983-1059 532-614 (762)
375 PF03938 OmpH: Outer membrane 20.8 9.7E+02 0.021 25.0 12.3 83 1051-1138 45-127 (158)
376 PF06946 Phage_holin_5: Phage 20.7 49 0.0011 32.6 1.2 12 1335-1346 37-48 (93)
377 PF05278 PEARLI-4: Arabidopsis 20.6 1.4E+03 0.031 26.9 15.9 13 468-480 108-120 (269)
378 PF04859 DUF641: Plant protein 20.6 1.6E+02 0.0035 30.9 4.9 49 526-574 79-127 (131)
379 KOG0239 Kinesin (KAR3 subfamil 20.5 2.1E+03 0.045 28.9 15.9 127 482-608 186-318 (670)
380 KOG2077 JNK/SAPK-associated pr 20.5 1.1E+03 0.024 30.4 12.5 121 889-1065 302-422 (832)
381 TIGR01167 LPXTG_anchor LPXTG-m 20.4 85 0.0018 24.5 2.3 20 1328-1348 12-31 (34)
382 KOG2751 Beclin-like protein [S 20.3 1.8E+03 0.038 27.8 15.4 105 488-592 160-269 (447)
383 PRK00523 hypothetical protein; 20.1 74 0.0016 30.0 2.1 19 1328-1346 4-22 (72)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.5e-61 Score=629.77 Aligned_cols=772 Identities=26% Similarity=0.346 Sum_probs=703.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000693 115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-------AKRKELAEVK 187 (1349)
Q Consensus 115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~e~-------e~~~~L~~~k 187 (1349)
+.+++|.++++++..+++.+.+.+...++++..+.++.. +++.|+.+|+++. +++.++.+.+
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k 903 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK 903 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999 9999999999998 5666666665
Q ss_pred H--------------HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcch
Q 000693 188 E--------------AFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA 253 (1349)
Q Consensus 188 e--------------~lee~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelek~~~~~~~~a 253 (1349)
. ..++.+..+...++++++.|++|+.++++ .+++ ++| +++|+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~-------- 960 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN-------- 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence 2 22888999999999999999999999999 8888 999 999999
Q ss_pred HHHHHHHHhHHHHHhhhhHhhhhhhh----HHHHHHhhhhhhhHHHHH-hccch------hhHHHHHHHHHhHHhhhhhh
Q 000693 254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL 322 (1349)
Q Consensus 254 ~~~e~~~~~l~ee~~~~~e~~~k~~k----~ee~~~~~~~~l~~~ee~-~~l~K------s~~~dlE~rl~~ee~~~~~~ 322 (1349)
++++++++|+++|.+++|.+++|.| +|+++.++.++|++++++ ++|+| ++|+|||.+|.++.+ .
T Consensus 961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen 961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 9999999999999999999999999 999999999999999999 99999 999999999999999 9
Q ss_pred hHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHH
Q 000693 323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1349)
Q Consensus 323 r~ele~~kr----~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~ 398 (1349)
|+++++.+| ++..+++.+.++..+..++..+|.+++.|++.++++++++.+.+..+...|++++++|.+|.++|+.
T Consensus 1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhcc
Q 000693 399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478 (1349)
Q Consensus 399 ~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~q 478 (1349)
.+..++++++.++||..++..++..|++............+|++. |+..+++++++.+..|++.++.+|+
T Consensus 1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999995555555544444444444447799999 9999999999999999999999999
Q ss_pred ch----HHHHHHHHH---hhHHHHHHHHH-----------HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000693 479 RN----LELEDIIRA---SNEAAEEAKSQ-----------LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540 (1349)
Q Consensus 479 k~----~EL~~q~~~---~~~~~Ek~k~~-----------l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~ele 540 (1349)
+| .+|.+|+++ .|+.+++.|+. +..+...+.+.+..++.++.++.+++.+++++.+.+.++.
T Consensus 1186 ~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~ 1265 (1930)
T KOG0161|consen 1186 KHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLT 1265 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 899999999 88999999988 7788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-HHHH
Q 000693 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDR 605 (1349)
Q Consensus 541 ekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r 605 (1349)
.+.+++..++..+.+.+++....+..+......+++++. .+...++.+..+++.+++++++ .+++
T Consensus 1266 ~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~ 1345 (1930)
T KOG0161|consen 1266 AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAK 1345 (1930)
T ss_pred HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888 6778999999999999999999 7888
Q ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH-------
Q 000693 606 ANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE------- 652 (1349)
Q Consensus 606 ~k~~rqrs~eLeell~~~k~kLEe~~~~-leelEe~------------------------LE~~K~Rlq-ELE------- 652 (1349)
.+..++.+....+ +..|+.++++.... ++++++. ++..+.+++ +++
T Consensus 1346 ~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1346 NELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877777 77888777765543 4444442 555555544 222
Q ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Q 000693 653 ---EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE---------------------RELT 708 (1349)
Q Consensus 653 ---eqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~---------------------reL~ 708 (1349)
..+..++++++.|+..+++|......+..+++....+.+..++.+......+ .++.
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999999999999999999999988888887777433333331 1444
Q ss_pred HHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 000693 709 ESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKS 776 (1349)
Q Consensus 709 eqlee~-------e~~k~~LE~EieEl~~qLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~ 776 (1349)
.+++++ +..++.++.++.+++.+|.|+++.++ .+|.++++.+.+.+ ++++|+.+ ++++++++++
T Consensus 1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEELRKN 1580 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHHHHH
Confidence 444444 77789999999999999999999876 88999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000693 777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA- 852 (1349)
Q Consensus 777 ~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~e---al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~- 852 (1349)
|+++|++++++|+++++.++++. +.+||||+||++ +++++|+..++++ |+|++++.|+++||.++++++
T Consensus 1581 ~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~~~~ 1653 (1930)
T KOG0161|consen 1581 LQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELEDAQR 1653 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999 9999999999999 999999999999999999877
Q ss_pred -------------HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhh
Q 000693 853 -------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLD 919 (1349)
Q Consensus 853 -------------~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~ 919 (1349)
+|+..+.+|++++...+.+++|.++.++.++.++.+.++.+.+++..+...+++|+.++..++++|.
T Consensus 1654 ~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1654 AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000693 920 SAISEKEATGQQLASHMNTVTELTEQHS 947 (1349)
Q Consensus 920 ~~vsei~~l~eEik~le~qIe~Ls~els 947 (1349)
...++...+.++++++..+...+..++.
T Consensus 1734 e~~~~~~~~~Er~kka~~~a~~~~~el~ 1761 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEELR 1761 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998883
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=1.6e-50 Score=515.46 Aligned_cols=700 Identities=25% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000693 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1349)
Q Consensus 342 ~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~ 421 (1349)
+++..+.+|...|.+|++||+++.++++++++.+..+.+.|++++++|.+|+++|+..+..+.++++.++||.. ++.
T Consensus 1 ~~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~---ELe 77 (859)
T PF01576_consen 1 DLERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSE---ELE 77 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HHHHHHHHHHhhhhh---hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch----HHHHHHHHH---hh
Q 000693 422 ELCSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDIIRA---SN 491 (1349)
Q Consensus 422 ~~l~~LEeeL~~~~~---e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~----~EL~~q~~~---~~ 491 (1349)
++..+|++.++.+.+ ..+|||+ ||..++|.|++.+..|+++++.+|+|| .+|.+||++ .+
T Consensus 78 ~l~~~Lee~~~~t~aq~E~~kkrE~----------El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k 147 (859)
T PF01576_consen 78 ELKERLEEAGGATQAQIELNKKREA----------ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQK 147 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhCcHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776 6699999 999999999999999999999999999 999999999 89
Q ss_pred HHHHHHHHH-----------HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 492 EAAEEAKSQ-----------LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQL 560 (1349)
Q Consensus 492 ~~~Ek~k~~-----------l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeel 560 (1349)
+++|+.|+. |+.+...+..+++.++.++.++.+++.++.+.++.++++.....++..++..+...+.+.
T Consensus 148 ~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~ 227 (859)
T PF01576_consen 148 AKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEA 227 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhhhHHHHHhHHhhhh
Q 000693 561 HDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDRANMSHQRSIELEDLFQTSHS 625 (1349)
Q Consensus 561 e~klee~q~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r~k~~rqrs~eLeell~~~k~ 625 (1349)
...+..+......|..++. .+...++.++.+++.+.+++++ .+++....++.+....+ +..|+.
T Consensus 228 e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E-l~~~k~ 306 (859)
T PF01576_consen 228 ESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE-LEQWKK 306 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH-HHHHHH
Confidence 9999999999999888888 6778999999999999999998 67777777776665555 888998
Q ss_pred hhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH----------HHHHHHHHHHHHHHHhh
Q 000693 626 KLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE----------EQISKLEKKCEEAEAGS 669 (1349)
Q Consensus 626 kLEe~~~~-leelEe~------------------------LE~~K~Rlq-ELE----------eqis~LEKK~k~~eqeL 669 (1349)
+|+..... ++.+++. +++.+.++. +++ ..+..+++++..|++.+
T Consensus 307 K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l 386 (859)
T PF01576_consen 307 KYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQL 386 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88864433 5555542 455555554 222 66778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH-------HHHHHHHH
Q 000693 670 KQYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELTESLNA-------AADEKRKL 721 (1349)
Q Consensus 670 ~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek---------------------~reL~eqlee-------~e~~k~~L 721 (1349)
+.|...+..+..+++.+..+++.+.+.+..+... +.+++.++++ +.+.++.|
T Consensus 387 ~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~L 466 (859)
T PF01576_consen 387 AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRL 466 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHH
Confidence 9999999999999999999999988844443333 2255555554 38899999
Q ss_pred HHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000693 722 QDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNS 796 (1349)
Q Consensus 722 E~EieEl~~qLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~ 796 (1349)
+.++.+++.+|.++++.+. .+|+++++.+.+.+ |+++|+.+ +++|++.|++++++|++|+++|+.+++.|+
T Consensus 467 E~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~l~eK---eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~ 542 (859)
T PF01576_consen 467 EQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERELQEK---EEEFEETRRNHQRQLESLEAELEEERKERA 542 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---hhHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999987 89999999999999 99999999 999999999999999999999999999999
Q ss_pred hhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHH
Q 000693 797 ELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA--------------GKYALLK 859 (1349)
Q Consensus 797 e~~~~~~~~~kk~E~~L~e---al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~--------------~k~~~l~ 859 (1349)
.++ +.+||||++|++ +++++|+...++. +.+++++.||++||..+++++ +++..|.
T Consensus 543 ~~~----r~kkKLE~~l~eLe~~ld~~n~~~~e~~---k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~ 615 (859)
T PF01576_consen 543 EAL----REKKKLESDLNELEIQLDHANRANEEAQ---KQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQ 615 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999 9999999999999 999999999999999999977 7788999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Q 000693 860 EELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTV 939 (1349)
Q Consensus 860 ~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qI 939 (1349)
+|++++...+.++++.++.++.++.++...++.+...+..+...+++|+.++..|+.+|....++...+.++++++..++
T Consensus 616 ~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~ 695 (859)
T PF01576_consen 616 AELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQA 695 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 000693 940 TELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEET 1019 (1349)
Q Consensus 940 e~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~ 1019 (1349)
..+..+|........- +++ ..+.|...+..|++.|..+|..+. .
T Consensus 696 ~~l~~eL~~Eq~~~~~---------------le~------~k~~LE~q~keLq~rl~e~E~~~~-----~---------- 739 (859)
T PF01576_consen 696 AQLAEELRQEQDHNQH---------------LEK------EKKALERQVKELQARLEEAEQSAL-----K---------- 739 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH---------------HHH------HHHHHHHHHHHHHHHHHHHHHhhh-----c----------
Confidence 9999999654421111 111 112222222223333333331111 0
Q ss_pred HHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHH
Q 000693 1020 LLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQK 1099 (1349)
Q Consensus 1020 ~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~ 1099 (1349)
.....|..+..++.+++..|..-.-.-.....-+.-++..|.++.-+. .+.-+.++.+++....++..++.
T Consensus 740 -----~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~----ee~~k~~~~~~d~~~kl~~k~k~ 810 (859)
T PF01576_consen 740 -----GGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQV----EEERKNAERLQDLVDKLQLKLKQ 810 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHH
Confidence 112233333334444444333333333333444444444444443333 22466777888888888888888
Q ss_pred HHHHHHhhHHHH
Q 000693 1100 LTSEVQGLQTQL 1111 (1349)
Q Consensus 1100 Lrkei~~Lq~ek 1111 (1349)
+++.+......-
T Consensus 811 ~krq~eeaEe~~ 822 (859)
T PF01576_consen 811 LKRQLEEAEEEA 822 (859)
T ss_dssp ------------
T ss_pred HHhhhhhHHHHH
Confidence 888887776653
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.9e-21 Score=260.81 Aligned_cols=252 Identities=13% Similarity=0.150 Sum_probs=231.4
Q ss_pred hHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHH
Q 000693 1012 RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKK 1091 (1349)
Q Consensus 1012 ~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~ 1091 (1349)
+..++.....++++++..+..+...++.+++ |.++|..|.++..++.+++.+|.+|..++. ..|+..|+++|+..+.
T Consensus 756 le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~--~~~~~~s~~ele~ei~ 832 (1311)
T TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQ--GSDLDRTVQQVNQEKQ 832 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccCCHHHHHHHHH
Confidence 3345555666677899999999999999999 999999999999999999999999999998 6677889999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000693 1092 AIEDLTQKLTSEVQGLQTQLEAQLNEKKAT---EETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQ---FKEEVE 1165 (1349)
Q Consensus 1092 ~~ne~ir~Lrkei~~Lq~eke~k~~eis~L---E~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~---l~eEIe 1165 (1349)
.++..++.++..++.++.+++.....++.| .+.+...-..+...+..+..++.+|.++...+..+... ++.+|.
T Consensus 833 ~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~ 912 (1311)
T TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS 912 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 55553333333338889999999999999999999998 999999
Q ss_pred hhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchhhHHHHHHHHHHHHHHHHHHHH
Q 000693 1166 NVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ--RGADSQKDSEREAALKSSLEELGAKNK 1243 (1349)
Q Consensus 1166 ~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y--~~g~~qL~~e~e~elk~le~ei~~le~ 1243 (1349)
.+.|++..+...+..+...++..+..++..++.+...+++|..++..|.+| .|+|.+| ..|..++..+...|..+..
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL-~~~e~el~~~~~~ie~le~ 991 (1311)
T TIGR00606 913 PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL-KQKETELNTVNAQLEECEK 991 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8889999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1244 EAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1244 ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
++..++.+|+.++++++++++...
T Consensus 992 e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 992 HQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.97 E-value=4.2e-19 Score=235.28 Aligned_cols=843 Identities=23% Similarity=0.300 Sum_probs=414.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000693 341 SALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARM 420 (1349)
Q Consensus 341 ~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el 420 (1349)
.+.+....-+......-+.++..+..+++++......+..+.++.+..+.++...++.++..+.++......+...+..+
T Consensus 890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444555555555555555544444444444444444444444444444433333333333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHH
Q 000693 421 KELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQ 500 (1349)
Q Consensus 421 ~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~ 500 (1349)
+..+..++ -+++.|...+|-+++.|..-=+.+++...+...|...+..+-+.+......
T Consensus 970 ~~e~~~~~---------------------e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen 970 EEEINSLD---------------------ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 244567777777777777766666666655555555444444444444444
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 501 LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQ 580 (1349)
Q Consensus 501 l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~ 580 (1349)
+..-.....+.++..+.++.++.. ....+.++...+..+...+..++.++..+..++.+....+..++..+..
T Consensus 1029 le~e~~~r~e~Ek~~rkle~el~~-------~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~e 1101 (1930)
T KOG0161|consen 1029 LEREKRIRMELEKAKRKLEGELKD-------LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKE 1101 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444444444555555555544 4445555777778888888889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHH-HHHH--HHHHH----HHHHH----
Q 000693 581 SNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVN-ELEL--LLEAE----KYRIQ---- 649 (1349)
Q Consensus 581 LqsrireLEEele~L~EeLeE~e~r~k~~rqrs~eLeell~~~k~kLEe~~~~le-elEe--~LE~~----K~Rlq---- 649 (1349)
++.++..|.+++. .++..+.+..+++...-.+ +.....++++..+.+. +++. ..+.. +..+.
T Consensus 1102 L~~~i~el~e~le------~er~~r~K~ek~r~dL~~e-le~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1102 LEARIKELEEELE------AERASRAKAERQRRDLSEE-LEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 5566666666666644433 5556677777755554 3332 22111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH------------------HHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000693 650 ELEEQISKLEKKCEEAEAGSKQYSDKVC------------------ELASELE-------AFQARTSSLEVALQMANDKE 704 (1349)
Q Consensus 650 ELEeqis~LEKK~k~~eqeL~el~~~l~------------------~Lk~ELE-------~leke~relEt~L~~~~ek~ 704 (1349)
.++.++..+.+++.+.-..+.....++. .+..+++ .....++.++..+..++.+.
T Consensus 1175 ~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~ 1254 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKL 1254 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555433333333332222 2222222 33355566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 000693 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQ 784 (1349)
Q Consensus 705 reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~ 784 (1349)
.++.+...++...+.++..++.++..++++.+..+..+--......+.++.+-+.+..-.=+...+...+++++..+..+
T Consensus 1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l 1334 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL 1334 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777766643333333333333222211111001122344444444444444
Q ss_pred HHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHH
Q 000693 785 TRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK----YALLKE 860 (1349)
Q Consensus 785 ~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k----~~~l~~ 860 (1349)
...++++...+.++. -++++..+++. .=.+++++.+..-..+++++.++ +..+..
T Consensus 1335 ~e~leee~e~~~~l~------------------r~lsk~~~e~~---~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe 1393 (1930)
T KOG0161|consen 1335 REQLEEEQEAKNELE------------------RKLSKANAELA---QWKKKFEEEVLQRLEELEELKKKLQQRLQELEE 1393 (1930)
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444444444333 23333333333 33333333333333333333322 223333
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHH----------------------------HHHHHhhhcchhhHHHHHHHHHHHHHhHH
Q 000693 861 ELDSYFIKVTSLESTNEELQRQV----------------------------VEANNKANNSSSENELLVETNNQLKSKVA 912 (1349)
Q Consensus 861 Ele~~~~~l~~~E~~i~eLe~El----------------------------~eleee~~~L~sele~l~~e~~kLeski~ 912 (1349)
.++..-...+.+|..+..|..++ .+.......+...++......+.+..++.
T Consensus 1394 ~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~ 1473 (1930)
T KOG0161|consen 1394 QIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQ 1473 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333444444444444 44444444444444444444444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000693 913 ELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLE 992 (1349)
Q Consensus 913 ~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~ 992 (1349)
.+...++.....+..+..+-+.+...|.+|...... .=-.+.+.+...+.+-.....|+
T Consensus 1474 kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e---------------------~~k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1474 KLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE---------------------GGKRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555544422 11111111112222222222222
Q ss_pred HHHHHHHHHHHHhhh-------hhhhhHHhHHHHHHHH--------HhhhhhHHH---------------------HHhh
Q 000693 993 GQIKSYEEQAREAST-------VAETRKFELEETLLKL--------KNLESTVEE---------------------LQTR 1036 (1349)
Q Consensus 993 ~~i~~~ee~~~~~~~-------~~~~~~~~~e~~~~kL--------e~~e~~v~e---------------------lk~k 1036 (1349)
..|..+|..+.-+-. .-...+++++.-+..- ..+-..+.. +..+
T Consensus 1533 ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~d 1612 (1930)
T KOG0161|consen 1533 AALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGD 1612 (1930)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcc
Confidence 222222221111000 0122222222111000 000011111 1111
Q ss_pred hhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000693 1037 SGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLN 1116 (1349)
Q Consensus 1037 ~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~ 1116 (1349)
+..++..+....-.++-+.+.++.+..++.+++..+. ...+.-+++.+........+..++.++..|....+...+
T Consensus 1613 i~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e----~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~R 1688 (1930)
T KOG0161|consen 1613 INELEIQLDHANKANEDAQKQLKKLQAQLKELQRELE----DAQRAREELLEQLAEAERRLAALQAELEELREKLEALER 1688 (1930)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222333334444444444444444442 123444555555555555555555555555555555555
Q ss_pred HHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 000693 1117 EKKATEETF---KSEIESLK----AQAAEKFALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHA 1186 (1349)
Q Consensus 1117 eis~LE~~i---k~~I~~le----~~L~~K~nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~ 1186 (1349)
.-..++... ...|..+. .....|..++..|.-++..+...-.. +.+.+...+.........+..-+...-
T Consensus 1689 arr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~ 1768 (1930)
T KOG0161|consen 1689 ARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQ 1768 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 544444444 22233322 22356666777777777666555444 555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHH----------------------------HHHHHHHHH-
Q 000693 1187 HEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSERE----------------------------AALKSSLEE- 1237 (1349)
Q Consensus 1187 ~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e----------------------------~elk~le~e- 1237 (1349)
+.++.++..-..+.++..++..+..+.. .||-.+. ..++ +.++.+..+
T Consensus 1769 ~le~~k~~LE~~~kdLq~rL~e~E~~a~--~~~k~~i-~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~ 1845 (1930)
T KOG0161|consen 1769 KLERLKKSLERQVKDLQLRLDEAEQAAL--KGGKKQI-AKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQV 1845 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHH-HHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHh
Confidence 6666555555555555555555554422 2333333 3333 333333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1238 ------LGAKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1238 ------i~~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
++.+...++.++..|+.+..++.++.....
T Consensus 1846 eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~ 1881 (1930)
T KOG0161|consen 1846 EEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEAN 1881 (1930)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666677777777777777777665544
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.5e-14 Score=194.93 Aligned_cols=339 Identities=11% Similarity=0.051 Sum_probs=203.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 000693 872 LESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALE 951 (1349)
Q Consensus 872 ~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~ 951 (1349)
....+|.++.++..+...+..+...+..+...+..+..+++.+++ |.++++.+.++..++.++..+|++|...+.....
T Consensus 742 ~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 357899999999999999999999999999999999999999999 9999999999999999999999999998832111
Q ss_pred Hh--HhHHhhhHHHHHHHHHH-------HHHHhhhhhhhhhhHHHH-----------------HHHHHHHHHHHHHHHHh
Q 000693 952 LH--SATEARVKEAEIQLHEA-------IQRFTQRDIEANNLNEKV-----------------SVLEGQIKSYEEQAREA 1005 (1349)
Q Consensus 952 ~~--~~~~~~~~e~~~~l~e~-------~~~~~~~~~~~~~l~~~~-----------------~~l~~~i~~~ee~~~~~ 1005 (1349)
-. ..-+..+...+..+... .........+++.|..++ ..|+..|..|.+.+...
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00111111111112111 111111111222221111 22222223333322222
Q ss_pred hhhhhhhHHhHHHHHHHHHhhhhhHHHHH--------hhhhhhHhhhhchHHHHHhHHHHHHHHH-----HhHHHHHHHh
Q 000693 1006 STVAETRKFELEETLLKLKNLESTVEELQ--------TRSGHFERESGGLVETNLKLTEDLALYE-----TKLSDLQAKL 1072 (1349)
Q Consensus 1006 ~~~~~~~~~~~e~~~~kLe~~e~~v~elk--------~k~~~~EseLrk~v~~i~rL~~EI~~le-----~qi~dL~~eL 1072 (1349)
.+.-...+.+++.....+..+......+. .....+.. ++..+..+..++.+|.+|. .++.++..++
T Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el 979 (1311)
T TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVND-IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETEL 979 (1311)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22222222222222222222222222211 11222333 5677778888888888776 4588888888
Q ss_pred hhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHH--HHHHHHHH
Q 000693 1073 SATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKAT--EETF---KSEIESLKAQAA--EKFALETR 1145 (1349)
Q Consensus 1073 s~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~L--E~~i---k~~I~~le~~L~--~K~nLe~~ 1145 (1349)
. . ...++++++..+..++..++.++++++.++..+....+.++.+ .+.+ +..|+++..++. .+..+...
T Consensus 980 ~--~--~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e 1055 (1311)
T TIGR00606 980 N--T--VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQE 1055 (1311)
T ss_pred H--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 6 2 2788999999999999999999999999999999999888888 6665 777888887774 33556655
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 1146 IKELEELLVNVETQ---FKEEVENVKVSAAGKEAELN-----SKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ 1216 (1349)
Q Consensus 1146 Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~-----~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y 1216 (1349)
..++...++.+... +..++..+...+......|+ .+..++....-.+....-.+.++-.=...+..+|..|
T Consensus 1056 ~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~ 1134 (1311)
T TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKF 1134 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 44455555555555555543 3333333333333333333333333344444444444
No 6
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.90 E-value=5.4e-12 Score=166.04 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=112.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000693 95 ANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQ 174 (1349)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq 174 (1349)
+-.|+..|+-.+..+...-+-...+...+..+|..+......+...+..+......|..-+.+.. .++.+|...+.
T Consensus 57 ~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~----~qkr~l~~~le 132 (1822)
T KOG4674|consen 57 LEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQ----EQKRQLMELLE 132 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33445555544444444433334444444444444444444444444444444444444111110 12222222221
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcchH
Q 000693 175 AEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAK 254 (1349)
Q Consensus 175 ~e~e~~~~L~~~ke~lee~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelek~~~~~~~~a~ 254 (1349)
-..+++......+..++..|..+.+..-+++..+....-. ..+ -.....+ ++.|+-
T Consensus 133 ---~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~----------~vs-~q~k~~r-l~QEks--------- 188 (1822)
T KOG4674|consen 133 ---RQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSE----------DVS-SQLKEER-LEQEKS--------- 188 (1822)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHH-HHHHHH---------
Confidence 1223444444455666777777777766666666432111 111 1112334 555555
Q ss_pred HHHHHHHhHHHHHhhhhHhhhhhhh--------HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHHHhHHhhhhhhhHHH
Q 000693 255 EVEGQMASLQEELKGLNEKISEKEK--------VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQEL 326 (1349)
Q Consensus 255 ~~e~~~~~l~ee~~~~~e~~~k~~k--------~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~rl~~ee~~~~~~r~el 326 (1349)
.++...+-|..++.+..|++..+.. +++.|.....+++++++++..-+.+...|+.++...-..+..+++..
T Consensus 189 ll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~ 268 (1822)
T KOG4674|consen 189 LLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTA 268 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778888889999888888877665 88889999999999999977778778888877766666555555443
Q ss_pred H
Q 000693 327 D 327 (1349)
Q Consensus 327 e 327 (1349)
+
T Consensus 269 ~ 269 (1822)
T KOG4674|consen 269 E 269 (1822)
T ss_pred H
Confidence 3
No 7
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.90 E-value=5.9e-12 Score=165.69 Aligned_cols=269 Identities=20% Similarity=0.260 Sum_probs=153.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHhhhcchhhHH
Q 000693 823 RDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIK----VTSLESTNEELQRQVVEANNKANNSSSENE 898 (1349)
Q Consensus 823 ~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~----l~~~E~~i~eLe~El~eleee~~~L~sele 898 (1349)
.-++.-+|-++|+.-..+|..|+...--...-+..++.++++++.. +..+.-.+..++.++..+..++..+...+.
T Consensus 910 ~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~ 989 (1822)
T KOG4674|consen 910 ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELE 989 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555668888888888888888777777777777777777652 333333444444444444444444443332
Q ss_pred HH----HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHhHhHhHHhhhHHHHHHH
Q 000693 899 LL----VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH-------SRALELHSATEARVKEAEIQL 967 (1349)
Q Consensus 899 ~l----~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~el-------s~~~~~~~~~~~~~~e~~~~l 967 (1349)
.. ...+..+...+..+.+++.....-+..++..+.++.+++..+...+ .+++-.|+...+.+......+
T Consensus 990 ~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~ 1069 (1822)
T KOG4674|consen 990 LSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEF 1069 (1822)
T ss_pred ccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333344555555555555555666666666666666665554443 556667777666554444333
Q ss_pred HHHH---HHHhhh----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHhHHHHHH
Q 000693 968 HEAI---QRFTQR----------------------DIEANNLNEKVSVLEGQIKSYEEQAREASTVAE-TRKFELEETLL 1021 (1349)
Q Consensus 968 ~e~~---~~~~~~----------------------~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~-~~~~~~e~~~~ 1021 (1349)
..+. ..+... +-+++.+++++.-|+.+...+..|.-.-++..- ..-+-+...
T Consensus 1070 ~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g-- 1147 (1822)
T KOG4674|consen 1070 AKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG-- 1147 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc--
Confidence 2221 111100 112333334444444444444444333222211 011111111
Q ss_pred HHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhh------hhcccccCHHHHHHHHHHHH
Q 000693 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSA------TIVEKDETVEQLHASKKAIE 1094 (1349)
Q Consensus 1022 kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~------~s~g~~~TveELQ~~q~~~n 1094 (1349)
+.++...|.-+...++-++..+.-+.-++.+|...+..++..|++|++.|.+ .++-+.+...+|......+|
T Consensus 1148 -~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vN 1225 (1822)
T KOG4674|consen 1148 -LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVN 1225 (1822)
T ss_pred -hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH
Confidence 3457778888888888888888888889999999999999999999999921 12334555556665555555
No 8
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.79 E-value=1.4e-20 Score=241.79 Aligned_cols=624 Identities=21% Similarity=0.260 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000693 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1349)
Q Consensus 332 ~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~ 411 (1349)
.+.+++-.+.+....+.++.....+-..|+..+...+++.-.....+......+.+++.+++..|+.....+..+...+.
T Consensus 188 qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~ 267 (859)
T PF01576_consen 188 QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHH
Confidence 55555666666666677777777777778888888888888888888888888888888888888888888888888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch----HHHHHHH
Q 000693 412 DLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDII 487 (1349)
Q Consensus 412 DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~----~EL~~q~ 487 (1349)
.+...+..++..+++-.+....++..+++... ||..+++-++..+..+-..+..++++. .++.+++
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~----------El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~l 337 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNA----------ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQL 337 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886666665555555555555556666666 777777777777777666666666655 6666666
Q ss_pred HH---hhHHHHHHHHH-----------HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 488 RA---SNEAAEEAKSQ-----------LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEV 553 (1349)
Q Consensus 488 ~~---~~~~~Ek~k~~-----------l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~el 553 (1349)
+. ..+.+++.|.. |.........++++.+.+..++.++..++..+...+..+......+..++..+
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L 417 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL 417 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66 33333443333 55666666677777777777777777777665555554444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhh
Q 000693 554 EEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKR 633 (1349)
Q Consensus 554 E~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rqrs~eLeell~~~k~kLEe~~~~ 633 (1349)
...+..+...+..+......|.. .+..+...+......+.+ +....+.|+..+..++..|+++.+.
T Consensus 418 k~~lee~~e~~e~lere~k~L~~-------El~dl~~q~~~~~k~v~e-------Lek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 418 KNELEELQEQLEELERENKQLQD-------ELEDLTSQLDDAGKSVHE-------LEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH-------hhccchhhhhhhccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322222222 222222222111111111 1111122222222222333333333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 000693 634 VNELELLLEAEKYRIQ-ELEEQISKLEKKCEE----AEAGSKQYSDKVCELASELEA-------FQARTSSLEVALQMAN 701 (1349)
Q Consensus 634 leelEe~LE~~K~Rlq-ELEeqis~LEKK~k~----~eqeL~el~~~l~~Lk~ELE~-------leke~relEt~L~~~~ 701 (1349)
+...+ ..+.|++ ++...-..+++.+.. |+.....+...+..+...|+. +...-..++..+..+.
T Consensus 484 l~~~E----~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 484 LEAEE----QKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2234444 444444444444422 222222223333333333331 1111122233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 000693 702 DKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQL 781 (1349)
Q Consensus 702 ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l 781 (1349)
..+...+....++.+.++++...+.+++..+++.....+. +......+++.+
T Consensus 560 ~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~----------------------------~~~~~~~~e~r~ 611 (859)
T PF01576_consen 560 IQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREE----------------------------LREQLAVSERRL 611 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 3333333333344444444555544444444444444443 334444555555
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 000693 782 EQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-------GK 854 (1349)
Q Consensus 782 ~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~-------~k 854 (1349)
..+..+|+..+.....+. +.++.+|.++.++.+.++....-...|....++|++.|-.++.+++++. .|
T Consensus 612 ~~l~~elee~~~~~~~a~----r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek 687 (859)
T PF01576_consen 612 RALQAELEELREALEQAE----RARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEK 687 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666 7777777777664443333333333344677777777777777777655 22
Q ss_pred -------HhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHH-HHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 000693 855 -------YALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE-LLVETNNQLKSKVAELQELLDSAISEKE 926 (1349)
Q Consensus 855 -------~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele-~l~~e~~kLeski~~LEseL~~~vsei~ 926 (1349)
+..|-.||-.-+....++++.+..|+..+.++..++..+....- .....+..|+++|.+|+..|....-...
T Consensus 688 ~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~ 767 (859)
T PF01576_consen 688 AKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRA 767 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 23455555555556666777777777777777777766655333 3357889999999999999998888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000693 927 ATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREAS 1006 (1349)
Q Consensus 927 ~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~ 1006 (1349)
.+..-++.++..|.+|.-+....- .-...++....+ |+.|+.++--+|...|+.+...-
T Consensus 768 ~~~k~~rk~er~~kEl~~q~ee~~---------------k~~~~~~d~~~k------l~~k~k~~krq~eeaEe~~~~~~ 826 (859)
T PF01576_consen 768 EAQKQLRKLERRVKELQFQVEEER---------------KNAERLQDLVDK------LQLKLKQLKRQLEEAEEEASRNL 826 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHhHH---------------HHHHHHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888877777665552211 001222222222 44445555555555555554444
Q ss_pred hhhhhhHHhHHHHHHHHHhhhhhHHHHHhh
Q 000693 1007 TVAETRKFELEETLLKLKNLESTVEELQTR 1036 (1349)
Q Consensus 1007 ~~~~~~~~~~e~~~~kLe~~e~~v~elk~k 1036 (1349)
+.--...-+|+++....+.+...+..+..+
T Consensus 827 ~k~Rk~q~elee~~e~~~~~e~~l~~lr~~ 856 (859)
T PF01576_consen 827 AKYRKLQRELEEAEERAEAAERELNKLRAK 856 (859)
T ss_dssp ----SSSSHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444456666655555566555555543
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.78 E-value=4e-10 Score=150.89 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski 911 (1349)
..+..+..++..++.++.+....+..+..++..+...+..+.+.++.+..++..+...+..+......+......+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 753 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666655555555555555555555555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 000693 912 AELQELLDSAISEKEATGQQLASHMNTVTELT 943 (1349)
Q Consensus 912 ~~LEseL~~~vsei~~l~eEik~le~qIe~Ls 943 (1349)
..+...+......+..+..++..+...+..+.
T Consensus 754 ~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~ 785 (1164)
T TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLE 785 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555543
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=1.6e-10 Score=154.43 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=8.3
Q ss_pred HHHHhHHHHHhhhhHhhhh
Q 000693 258 GQMASLQEELKGLNEKISE 276 (1349)
Q Consensus 258 ~~~~~l~ee~~~~~e~~~k 276 (1349)
.++....+.+..+.|.+..
T Consensus 172 ~~~~~t~~nL~r~~d~l~e 190 (1179)
T TIGR02168 172 ERRKETERKLERTRENLDR 190 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=1.7e-10 Score=154.48 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhH
Q 000693 326 LDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQ 369 (1349)
Q Consensus 326 le~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~e 369 (1349)
+......+..+...+..+...+..++..+.....++..+...+.
T Consensus 239 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1164)
T TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=5.7e-10 Score=149.18 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHH
Q 000693 836 NLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQ 915 (1349)
Q Consensus 836 ~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LE 915 (1349)
.+...+..++..+.++...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..++
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~ 753 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443333333444444444444444444444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhH
Q 000693 916 ELLDSAISEKEATGQQLASHMNTV 939 (1349)
Q Consensus 916 seL~~~vsei~~l~eEik~le~qI 939 (1349)
..+......+..+..++..+...+
T Consensus 754 ~~~~~~~~~~~~~~~~l~~~~~~~ 777 (1179)
T TIGR02168 754 KELTELEAEIEELEERLEEAEEEL 777 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333333333333333333
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.75 E-value=1.3e-09 Score=146.21 Aligned_cols=335 Identities=25% Similarity=0.333 Sum_probs=192.7
Q ss_pred hHHHHHhhhhHhhhhhhhHHHHHHhhhhhhhHHHHHhccchhhHHHHHHHHHhHHhhhhhhhHHHHHHhhhhhhHHHHHH
Q 000693 262 SLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEIS 341 (1349)
Q Consensus 262 ~l~ee~~~~~e~~~k~~k~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~rl~~ee~~~~~~r~ele~~kr~~~~~~e~~~ 341 (1349)
.+-+|+.|.-.-..+..+.+..+..+..+|...++.+.--..++.-|+........ .-.+.. ++-..+...+.-.+.
T Consensus 159 ~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y~~l~~--e~~~~~~~~~~~~~~ 235 (1163)
T COG1196 159 KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKA--ELRELELALLLAKLK 235 (1163)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHH
Confidence 36667777666666666666666666666666555533333444444433333322 000111 111114555556666
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000693 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1349)
Q Consensus 342 ~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~ 421 (1349)
.+..++..+.+.+.....++..+..++++-......++..++++...+..++.++-.+...+..++..+..+...+..+.
T Consensus 236 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 315 (1163)
T COG1196 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777778888888888888888888888888888888877777777777777777777777666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHH
Q 000693 422 ELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQL 501 (1349)
Q Consensus 422 ~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l 501 (1349)
.....+...+.........+...+.....-..++......+.....+++.... ....++...+...+..+.....++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1163)
T COG1196 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS---ALLEELEELFEALREELAELEAEL 392 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555553333323334555555555555555554444 111234444444444444444444
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1349)
Q Consensus 502 ~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~L 581 (1349)
......+...+..+..++..+..+..+...+.+++..+...+..++..+......+..+...++.+...+..++..+..+
T Consensus 393 ~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
T COG1196 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHhhH
Q 000693 582 NTRSSELEEELRITKERSAED 602 (1349)
Q Consensus 582 qsrireLEEele~L~EeLeE~ 602 (1349)
...+..+...+..+...+...
T Consensus 473 ~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 473 QEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555553
No 14
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.70 E-value=1.6e-08 Score=130.66 Aligned_cols=248 Identities=20% Similarity=0.190 Sum_probs=199.1
Q ss_pred HHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHH
Q 000693 1013 KFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKA 1092 (1349)
Q Consensus 1013 ~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~ 1092 (1349)
.-++.......+.....+..+......++. +--+|..+.++..++..+...+..+..++. .+..+++|++|++.+...
T Consensus 753 ~~el~~~~~~~e~~~~~l~~~~~~~~~~~~-l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~-~~~d~i~t~~E~~~Ek~~ 830 (1294)
T KOG0962|consen 753 YEELGDLSEEEEDDEKLLDTIDAAEESAET-LQTDVTVLERFLKDLKLREKEIEELVSELD-SSVDGIRTVDELRKEKSK 830 (1294)
T ss_pred HHHHHhhhhhhhHHHHHhcccchhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHH
Confidence 334444444445555666666666666777 677888899999999999999999999994 047789999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 000693 1093 IEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF---KSEIESLKAQAAEKFALETRIKELEELLVNVETQ---FKEEVEN 1166 (1349)
Q Consensus 1093 ~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i---k~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~---l~eEIe~ 1166 (1349)
+....+.+|+++..++.......++++.+.+.. +....++..++++..++..+|.++...+..+-.. +...+..
T Consensus 831 ~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~ 910 (1294)
T KOG0962|consen 831 KQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQP 910 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 999999999999999999999999999998887 7889999999999999999999999999888877 6677777
Q ss_pred hhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hCCchhhHHHHHHHHHHHHHH---
Q 000693 1167 VKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ------RGADSQKDSEREAALKSSLEE--- 1237 (1349)
Q Consensus 1167 Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y------~~g~~qL~~e~e~elk~le~e--- 1237 (1349)
+.+...++...+...+.+.+..+..++..+..++.+++.|+.++.....| .-|.++| ..|...+......
T Consensus 911 ~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~e~l~~~~~~~~~ 989 (1294)
T KOG0962|consen 911 LKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQL-SESEEHLEERDNEVNE 989 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHH-HHHHHHHHHHHHHHHH
Confidence 78888888888888888877777778888899999999999999998888 3345556 5666444433332
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1238 --------------------LGAKNKEAALLQNKVAELEQKLQQAQ 1263 (1349)
Q Consensus 1238 --------------------i~~le~ei~~lt~eIneLeqkL~dSd 1263 (1349)
+-.++.++.++..+++.+..++..++
T Consensus 990 ~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 990 IKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556667777777777777777666
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.70 E-value=1.5e-08 Score=136.28 Aligned_cols=77 Identities=30% Similarity=0.295 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 000693 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1349)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLes 909 (1349)
+|..++.++..+...+..+...+..++.++..+...+..+.+.++.+...+..+...+..+......+......+..
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 744 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666665555555555555555555555555555555555444444433333333333333333333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.64 E-value=2.2e-08 Score=126.98 Aligned_cols=226 Identities=16% Similarity=0.276 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH
Q 000693 531 DSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND------YKDKITQLELILNQSNTRSSELEEELRITKERSAEDED 604 (1349)
Q Consensus 531 e~erei~eleekiskLq~EL~elE~eLeele~klee------~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ 604 (1349)
...+.+.++...+..+..-+..++.....+...+.. .......+++-|....+++..++..+..+..++.....
T Consensus 180 ~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~ 259 (775)
T PF10174_consen 180 EALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRS 259 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888888888888777544222111 11122244555555555555555555544444444333
Q ss_pred HhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000693 605 RANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELE 684 (1349)
Q Consensus 605 r~k~~rqrs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE 684 (1349)
+.........++...+ +........+...++..+..+..-...+..+..++.........++..+..++..+.
T Consensus 260 ~~~~~~~~r~~~~k~l-------e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 260 RGELSEADRDRLDKQL-------EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred cccccccchHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3332222222221111 111111111222233333333333344444444454444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1349)
Q Consensus 685 ~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1349)
+.+..+.-+.+.+..++..+..-..+++..+..+..++.+..-+...|..+-+.++....+++.++.++++++..|..+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555566666666666666666666666777777777777778888888888888877766
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.62 E-value=3.5e-09 Score=138.70 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000693 677 CELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRND 745 (1349)
Q Consensus 677 ~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~E 745 (1349)
..+...+..+......++.....+...+.++...++++...+..++ .+.++...+.+++..+..++..
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~ 614 (880)
T PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREK 614 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444 3444444444444444433333
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=99.61 E-value=1.1e-08 Score=134.01 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski 911 (1349)
.++..++..+......++++..++..+..++..+...+...++....+.....++..++..+..++..+...+..++ .+
T Consensus 516 ~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~ 594 (880)
T PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RI 594 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44444444455556666677777788888888888888777777777777777777777777777776666666666 45
Q ss_pred HHHHHHhhHHHHHHH
Q 000693 912 AELQELLDSAISEKE 926 (1349)
Q Consensus 912 ~~LEseL~~~vsei~ 926 (1349)
.++...|....+.+.
T Consensus 595 ~~~~~~i~~~~~~~~ 609 (880)
T PRK02224 595 RTLLAAIADAEDEIE 609 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554443333333
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.55 E-value=4.8e-07 Score=115.03 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=90.9
Q ss_pred HHhHHhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHh
Q 000693 312 FSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391 (1349)
Q Consensus 312 l~~ee~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~e 391 (1349)
|.++..+-.+...++..|+..+..++.+...+...+..|.+.| +-..++..+...++........+.. +.-....+..
T Consensus 41 lkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~r 118 (775)
T PF10174_consen 41 LKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFER 118 (775)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHH
Confidence 4455554555667778888888888888888888888888888 8888888888888877777776666 6667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000693 392 VNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1349)
Q Consensus 392 LeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~ 438 (1349)
++.+.+.+......+.+.+..+...+..++..++...+++..+...+
T Consensus 119 l~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 119 LQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666666666666666666666666666666543
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.48 E-value=4.3e-07 Score=119.27 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=37.9
Q ss_pred hhHHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhhhHHHHHHhhhhhhhHHHHHhccchhhHHHHHHHH
Q 000693 244 RLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRF 312 (1349)
Q Consensus 244 k~~~~~~~~a~~~e~~~~~l~ee~~~~~e~~~k~~k~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~rl 312 (1349)
+....++.-.+.++.++..+...+..+.+....+..++..+..+..++...+.++.--...+..+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444456777777777777776666666655666666666665555555333333344444333
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.40 E-value=4.2e-06 Score=110.02 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhh
Q 000693 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLK-----EELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSE 896 (1349)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~-----~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~se 896 (1349)
+...|..++.+|..+..++.+...++..+. .++..+...+..++..++.+...+..+...+..+...
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 695 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443 4444444444444444444444444444333333333
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=7.9e-06 Score=104.37 Aligned_cols=332 Identities=17% Similarity=0.206 Sum_probs=163.4
Q ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHH
Q 000693 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELE 456 (1349)
Q Consensus 377 ~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~ 456 (1349)
....-|..+..+|+.|.+....-.....-+++-+..|+. .....-+|-++|. |+-
T Consensus 264 ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~---------------~k~~al~fL~ken----------el~ 318 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEG---------------PKNEALEFLKKEN----------ELF 318 (1293)
T ss_pred ccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHH----------HHH
Confidence 345567777777777777777776666666666666666 2223335555555 444
Q ss_pred HHHhcHHHHhhhhHHHHHHhccchHHHHHHHHH----hhHHHHHHH----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000693 457 LKLKSLEEQHNETGAAAATASQRNLELEDIIRA----SNEAAEEAK----SQLRELEPRFIAAEQRSVELEQQLNLVELK 528 (1349)
Q Consensus 457 ~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~----~~~~~Ek~k----~~l~~l~~~~~~~e~k~keLE~Ql~elq~K 528 (1349)
.++--+-. +.-.+ .+-|..+..+.++. ++.-.++.. ..+...+.-+...+.+.+.+......+..+
T Consensus 319 ~~~~~~~q-~~~~~-----~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~ 392 (1293)
T KOG0996|consen 319 RKKNKLCQ-YILYE-----SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKK 392 (1293)
T ss_pred HHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111 11111 11122222222222 111111111 124445555555666666666666667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH----
Q 000693 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDED---- 604 (1349)
Q Consensus 529 ~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~---- 604 (1349)
+.+.+++-....+.+-.+...+..++.++.....++.++..-.......+...+.++..|...+......+.+...
T Consensus 393 ~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 393 FQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777777767777777777777777777766666665555322
Q ss_pred HhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000693 605 RANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELE 684 (1349)
Q Consensus 605 r~k~~rqrs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE 684 (1349)
+....+..+..++..+..|-.++..+.+.++-.+ ..+.-|.+.+......+..+...+......+.
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae--------------sel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~ 538 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSELDVAE--------------SELDILLSRHETGLKKVEELKGKLLASSESLK 538 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333333333333333333332222 22222222222222233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERL 753 (1349)
Q Consensus 685 ~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~ 753 (1349)
.-...+..+...|........+....+..+....+.+...+..++..++|+.+.++.-+..-++++..+
T Consensus 539 e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 539 EKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 333333333333333333333333334444444444444445555556666655554444444444433
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=0.00019 Score=92.28 Aligned_cols=267 Identities=18% Similarity=0.277 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 000693 689 RTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRET 768 (1349)
Q Consensus 689 e~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~ee 768 (1349)
.+..++..++..+...+.+..++..+......+...+.++...++.+...+..+--.+..+.+.+.++|.+...+ .
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~----~ 854 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK----V 854 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----c
Confidence 444555566666666666666666555555666555555555555555555555555555666666566653333 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000693 769 DVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQL 848 (1349)
Q Consensus 769 e~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~ 848 (1349)
--...++..+++|+.+..++++... ++.+|.-=..||..|+.++.- .++...+.|+.
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~qe---------~~~Kk~~i~~lq~~i~~i~~e---------~~q~qk~kv~~----- 911 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEELQE---------KAAKKARIKELQNKIDEIGGE---------KVQAQKDKVEK----- 911 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHhhch---------hhHHhHHHHHH-----
Confidence 1234566677777777777776641 122211123455566665532 22222222332
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Q 000693 849 AEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1349)
Q Consensus 849 ~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l 928 (1349)
...++.-+.+++-.+...++.+.+.+..++..+..++..+..+..++..+......++.+..+++..+.+....+..+
T Consensus 912 --~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 912 --INEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred --HHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566677777778888888888888888888888888888888998999999999999999888888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000693 929 GQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREA 1005 (1349)
Q Consensus 929 ~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~ 1005 (1349)
...+..+...++++...... -.-.|+. +++++ -..+..++.+++-|.+|++....-
T Consensus 990 k~~~~~~k~~~e~i~k~~~~------lk~~rId-~~~K~--------------e~~~~~l~e~~~~~~~~~k~~~~l 1045 (1293)
T KOG0996|consen 990 KKELRDLKSELENIKKSENE------LKAERID-IENKL--------------EAINGELNEIESKIKQPEKELKKL 1045 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhhcc-HHHHH--------------HHHHHHHHHHHhhhhhHHHhhCcc
Confidence 88888888888876544311 0011111 33333 345666777899999998665543
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=99.11 E-value=0.00028 Score=93.38 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000693 832 EKLKNLEGQVK 842 (1349)
Q Consensus 832 k~L~~lq~qik 842 (1349)
+.|+.+...++
T Consensus 529 ~~l~~~~~~l~ 539 (895)
T PRK01156 529 ADLEDIKIKIN 539 (895)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.09 E-value=0.00043 Score=94.16 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=35.6
Q ss_pred hhchHHHHHhHHHHHHHHHHhHHHHHHHhh---hhh---cccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000693 1044 SGGLVETNLKLTEDLALYETKLSDLQAKLS---ATI---VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNE 1117 (1349)
Q Consensus 1044 Lrk~v~~i~rL~~EI~~le~qi~dL~~eLs---~~s---~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~e 1117 (1349)
.+.....|..|...|..++..|..+...-. .|- ...-..++.+......+...++.++..+..+..+.......
T Consensus 766 ~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 845 (1201)
T PF12128_consen 766 KGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKE 845 (1201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766666654441 000 00111233333344444444444444444444444444433
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=99.09 E-value=0.00034 Score=92.62 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000693 771 MEKLKSAEEQLEQQTRVLEQATS 793 (1349)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~ 793 (1349)
..++..+..++..++..+.....
T Consensus 586 ~~~l~e~~~~l~~l~~~l~~le~ 608 (895)
T PRK01156 586 RSRSNEIKKQLNDLESRLQEIEI 608 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444455555554444443
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.04 E-value=0.00068 Score=92.28 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 645 KYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELT 708 (1349)
Q Consensus 645 K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~ 708 (1349)
+.++..++..+..+.+.+..++..+......+..+..++......+......+..++.....+.
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 669 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLK 669 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555554444444444444444433333
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=0.0009 Score=85.10 Aligned_cols=370 Identities=18% Similarity=0.197 Sum_probs=210.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHh-hHHHHHHHHHHHHHHHHHhhHH
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELL-DSAISEKEATGQQLASHMNTVT 940 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL-~~~vsei~~l~eEik~le~qIe 940 (1349)
+..-+..+.+++..++..+.++..++.++..+.............|.-+...+---. +...++..++..++..+...|.
T Consensus 672 ~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~ 751 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVE 751 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHH
Confidence 444555777777777777788887777777777777777666666665554443311 3334555556666666666666
Q ss_pred HHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHH
Q 000693 941 ELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETL 1020 (1349)
Q Consensus 941 ~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~ 1020 (1349)
+...+.-....+.-.....+.-+|+.+.++-- .++. +|+.|+..|+.+.-.+.+.+..-+-+--+++
T Consensus 752 e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~---~re~-------rlkdl~keik~~k~~~e~~~~~~ek~~~e~e--- 818 (1174)
T KOG0933|consen 752 ESEQQIKEKERALKKCEDKISTLEKKMKDAKA---NRER-------RLKDLEKEIKTAKQRAEESSKELEKRENEYE--- 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66666644555555555566666666655432 2333 3555667777777666666665555555555
Q ss_pred HHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHH
Q 000693 1021 LKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL 1100 (1349)
Q Consensus 1021 ~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~L 1100 (1349)
.+...++.++......+..+......|..|..++..+...|... ...+...|.+...+...++..
T Consensus 819 ----~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~-----------~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 819 ----RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV-----------EKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HhHHHHHHHHHHHHHHHHHhh
Confidence 45555556655555556655555556666666666655555543 334556777778888888888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 000693 1101 TSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNS 1180 (1349)
Q Consensus 1101 rkei~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~ 1180 (1349)
-.+++.+-...+...++++..+..++.....+..--..+.+....|+.+.....=+... ..- +-.....|+=
T Consensus 884 dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~e----k~~----fgk~gt~yDf 955 (1174)
T KOG0933|consen 884 DTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDE----KRL----FGKKGTDYDF 955 (1174)
T ss_pred hHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHH----HHh----hcCCCCcccc
Confidence 88887777777777777666666553333333332233333333343333322222110 000 0000000000
Q ss_pred ---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1181 ---KLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQ 1257 (1349)
Q Consensus 1181 ---~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeq 1257 (1349)
--..+..+..+++...+++.+.++ .....-| ..|+.....+...+..++.+-..+..-|..|..
T Consensus 956 ~~~~p~~are~l~~Lq~k~~~l~k~vn------------~~~m~ml-e~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe 1022 (1174)
T KOG0933|consen 956 ESYDPHEAREELKKLQEKKEKLEKTVN------------PKNMDML-ERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDE 1022 (1174)
T ss_pred ccCCHhHHHHHHHHhhHHHHHHHhhcC------------HHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001122223333333333333221 1112235 778888888888888888888888888888888
Q ss_pred HHHHHHHhhhccCCCCccccccccccccccccccccC
Q 000693 1258 KLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVIST 1294 (1349)
Q Consensus 1258 kL~dSd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1294 (1349)
+-.+.-+..-.+| --|||.-|||
T Consensus 1023 ~k~~~L~kaw~~V--------------N~dFG~IFs~ 1045 (1174)
T KOG0933|consen 1023 KKREELNKAWEKV--------------NKDFGSIFST 1045 (1174)
T ss_pred HHHHHHHHHHHHH--------------hhhHHHHHHH
Confidence 7777766665544 3466666666
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.87 E-value=0.0027 Score=87.05 Aligned_cols=130 Identities=21% Similarity=0.355 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000693 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1349)
Q Consensus 706 eL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~ 785 (1349)
.+...+..++.....+..++...+.++...+..+..+...+.....+....+..|+..|++-....+.+-...+ ..+.
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~--~~l~ 1066 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--DELH 1066 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH--HHHH
Confidence 55555555566666666666666666666666666777777766667777888899999998888887766665 7777
Q ss_pred HHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 786 RVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKY 855 (1349)
Q Consensus 786 ~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~ 855 (1349)
..|-.-+++++.++ -..+....|...|.++|++++..++.+...+..+..+|
T Consensus 1067 ~~l~~~~~~~~~~~------------------~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W 1118 (1486)
T PRK04863 1067 ARLSANRSRRNQLE------------------KQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW 1118 (1486)
T ss_pred HHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777 12344556666777888888888888888888777433
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=0.0019 Score=82.22 Aligned_cols=218 Identities=18% Similarity=0.263 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Q 000693 713 AAADEKRKLQDTSNGYNEKLAEAENLL---ELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLE 789 (1349)
Q Consensus 713 e~e~~k~~LE~EieEl~~qLeElE~~L---e~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le 789 (1349)
+++.+++.-+.++..+..+|..++..- ..++.++++....+..++.++..- .--.+-.-++.+.+.|..++..|.
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN--EFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666543 378888888888888777766655 223345667777888888877776
Q ss_pred HHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 790 QATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKV 869 (1349)
Q Consensus 790 ~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l 869 (1349)
+....--... .-.+.+|.+++++ .+.+. ..|+.++..|+.+...+++..+.++...-+.+.+....
T Consensus 759 e~~~~~k~~~----~~i~~lE~~~~d~---~~~re-------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~ 824 (1174)
T KOG0933|consen 759 EKERALKKCE----DKISTLEKKMKDA---KANRE-------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH 824 (1174)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhHh---hhhhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543333333 3445677777653 12222 45666667788899999999999988888888888888
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 870 TSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1349)
Q Consensus 870 ~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~el 946 (1349)
..++..+...++.+..+...+..+.+++..+...+...+.+...++.+|......+...+.++..+....+...++-
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~ 901 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEK 901 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHh
Confidence 88888888888888888888777777777777777777777777777666666666666666655555555444433
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.70 E-value=0.0036 Score=78.29 Aligned_cols=392 Identities=19% Similarity=0.208 Sum_probs=201.9
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhh--hhhhhhhhhhhhchHHHHH
Q 000693 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF--CKTDSLLSQALANNAELEL 457 (1349)
Q Consensus 380 ~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~--~K~e~~ls~~~~~~~El~~ 457 (1349)
......+.++.-+++++.+++......+..+.++-.++...+..+++|--.|....... +..++ |+..
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~----------e~~k 96 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDS----------ELAK 96 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHhH
Confidence 55666778888899999999999999999999999988889999999988888877643 33333 5554
Q ss_pred HH-hcHHHHhhh-----hHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 000693 458 KL-KSLEEQHNE-----TGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSD 531 (1349)
Q Consensus 458 ~~-k~lee~~~~-----~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e 531 (1349)
++ +.++..... ....+..++.+|..--.-|+.++.-+.+.+..+..+-..+..+..+......-......++.+
T Consensus 97 ~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~ 176 (522)
T PF05701_consen 97 FRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEE 176 (522)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333222221 223345556666555555555666666666665555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 000693 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQ 611 (1349)
Q Consensus 532 ~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rq 611 (1349)
+..+|..+.+.+..........+.+..... ......+..+...+......+..|..++... ...+.++.....
T Consensus 177 L~~Ei~~lke~l~~~~~a~~eAeee~~~~~---~~~~~~~~~~~~~leeae~~l~~L~~e~~~~----k~Le~kL~~a~~ 249 (522)
T PF05701_consen 177 LSKEIIALKESLESAKLAHIEAEEERIEIA---AEREQDAEEWEKELEEAEEELEELKEELEAA----KDLESKLAEASA 249 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 555544444444333222211111111000 0011111122222222222222222222000 001111111111
Q ss_pred hhHHHHHhHHhhh-----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000693 612 RSIELEDLFQTSH-----------SKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELA 680 (1349)
Q Consensus 612 rs~eLeell~~~k-----------~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk 680 (1349)
.+..|...+..+. .........+..+...|+..+..++.....++.+......+..++......+..++
T Consensus 250 ~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 250 ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 01111112222333334444444444444444444444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 681 SELEAFQARTSSLEVALQMANDKE-------RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERL 753 (1349)
Q Consensus 681 ~ELE~leke~relEt~L~~~~ek~-------reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~ 753 (1349)
.........+..+...+...+..+ .+......++...+..+..+.+..+.........+..++.++..++..+
T Consensus 330 e~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 330 EREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555444444443 2333445556677777777777777777777777888888888888888
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 754 ESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA 791 (1349)
Q Consensus 754 esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e 791 (1349)
...+.+|.+. -.+++.-+-+....+.++.+--+..
T Consensus 410 ~t~E~rL~aa---~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 410 KTAEERLEAA---LKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888887 6666666666666666666533333
No 32
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.69 E-value=0.002 Score=79.81 Aligned_cols=402 Identities=16% Similarity=0.137 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski 911 (1349)
+-..-|+.+.+..+.|+...+-++..++.|+--++..++.++...++.+.++..+.+++..+...+......+-.....+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444566666666666666777778888888888877777777777777777666665555555555444444444333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHhHhHhHHh--hhHHHHHHHHHHHHHHhhhhhhh
Q 000693 912 AELQELLDSAISEKEATGQQLASHMNTVTELTEQH--------SRALELHSATEA--RVKEAEIQLHEAIQRFTQRDIEA 981 (1349)
Q Consensus 912 ~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~el--------s~~~~~~~~~~~--~~~e~~~~l~e~~~~~~~~~~~~ 981 (1349)
.+--..|..--......-.++....++...+..++ .+++++|..++- .+.+..-||-...++++-.-.-.
T Consensus 172 ~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~ 251 (1265)
T KOG0976|consen 172 HDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTC 251 (1265)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhh
Confidence 33333333333333333444444444444444444 556777766553 35566667777777666554444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHh----hhhchHHHHHhHHHH
Q 000693 982 NNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFER----ESGGLVETNLKLTED 1057 (1349)
Q Consensus 982 ~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~Es----eLrk~v~~i~rL~~E 1057 (1349)
.-+.+.-.-||.--+.++|.-..=.+.-..+--|+- ..+-.|..++..++.+-. -....-..--++..+
T Consensus 252 s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElS-------qkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~e 324 (1265)
T KOG0976|consen 252 SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELS-------QKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLE 324 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444444444444444433333332222222221 111222222222222111 022333444566677
Q ss_pred HHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 000693 1058 LALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF---KSEIESLKA 1134 (1349)
Q Consensus 1058 I~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i---k~~I~~le~ 1134 (1349)
...+..++-+|.-.|-- .-+.++-+-+....+..+...+--.+..++..++....+.++|-... .-+|+.++.
T Consensus 325 nmkltrqkadirc~LlE----arrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLE----ARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777720 12333333344444455555555566667777777766666664444 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1135 QAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIA 1214 (1349)
Q Consensus 1135 ~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~ 1214 (1349)
.+..-..+...-+..++.+.....+ +.-|-.....+...+..++-=.++.+-.+...+.+.+..++.+..+.....
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ek----ld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle 476 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEK----LDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLE 476 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChh
Confidence 6666666655555555555554444 334555667778888888889999999999999999999999999999988
Q ss_pred HhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1215 EQRGADSQKDSEREAALKSSLEELGAKNKEAALLQ 1249 (1349)
Q Consensus 1215 ~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt 1249 (1349)
..+..|.++ +....++..-...|+-++.+|-...
T Consensus 477 ~qrKVeqe~-emlKaen~rqakkiefmkEeiQeth 510 (1265)
T KOG0976|consen 477 KQRKVEQEY-EMLKAENERQAKKIEFMKEEIQETH 510 (1265)
T ss_pred hhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 7777777776666766666665443
No 33
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=0.0047 Score=78.61 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=92.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 000693 824 DSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVET 903 (1349)
Q Consensus 824 ~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e 903 (1349)
+-|+. +++++.+.+.+++|..+++++.-++..-.++.++...+..++..+.....+...+..+++
T Consensus 666 rLe~~---k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~------------ 730 (1200)
T KOG0964|consen 666 RLELL---KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELN------------ 730 (1200)
T ss_pred HHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------------
Confidence 34555 999999999999999999999999999999999999888888888888887776665444
Q ss_pred HHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhh
Q 000693 904 NNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANN 983 (1349)
Q Consensus 904 ~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~ 983 (1349)
..+..+..++..+.+..-.+..+...+..+..+...+..+++..+=.|-..+ -.+++.+++.+ +++
T Consensus 731 --~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~e---------e~e~l~kLn~e---I~~ 796 (1200)
T KOG0964|consen 731 --TIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPE---------ELERLSKLNKE---INK 796 (1200)
T ss_pred --HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHH---------HHHHHHHhhHH---HHH
Confidence 4444444555555555555555555555555565555555544431111111 13444454444 555
Q ss_pred hHHHHHHHHHH
Q 000693 984 LNEKVSVLEGQ 994 (1349)
Q Consensus 984 l~~~~~~l~~~ 994 (1349)
|..+|.++.+.
T Consensus 797 l~~kl~~~~~e 807 (1200)
T KOG0964|consen 797 LSVKLRALREE 807 (1200)
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.63 E-value=0.0054 Score=76.72 Aligned_cols=248 Identities=21% Similarity=0.217 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHhh---hhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHH
Q 000693 839 GQVKMYEEQLAEAAGKYALLKEELDSYFI-KVTS---LESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1349)
Q Consensus 839 ~qik~~q~~~~ea~~k~~~l~~Ele~~~~-~l~~---~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~L 914 (1349)
..+++++..++.+..-+..|+.|+..... .+.. ..+....+...+..+..++......+.........|...+..|
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL 314 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESL 314 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888888888888877 4443 4455666666677777777777778888888888888888888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 000693 915 QELLDSAISEKEATGQQLASHMNTVTELTEQHSR---ALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVL 991 (1349)
Q Consensus 915 EseL~~~vsei~~l~eEik~le~qIe~Ls~els~---~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l 991 (1349)
..+|...-.++..+..+.......|..|..++.+ .++...+.+.+..+.-.- +
T Consensus 315 ~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~------------------------l 370 (522)
T PF05701_consen 315 RSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSE------------------------L 370 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHH------------------------H
Confidence 8888888888888888888888888888888844 222222333322222222 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHH
Q 000693 992 EGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAK 1071 (1349)
Q Consensus 992 ~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~e 1071 (1349)
-..|..+-..+..+.......+.++..+...++.....+..+..++..+..++...-..-..-..+|+.+...-......
T Consensus 371 ~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~ 450 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRAS 450 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 22222233334444444455555555555555556666666655555555544333333333344444432221111111
Q ss_pred hhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000693 1072 LSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQ 1110 (1349)
Q Consensus 1072 Ls~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~e 1110 (1349)
-+...++-+.|++|-...-....+--....+.+..-..+
T Consensus 451 ~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aq 489 (522)
T PF05701_consen 451 DSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQ 489 (522)
T ss_pred ccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100022233567776664444433333333333333333
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.54 E-value=0.021 Score=78.73 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHH
Q 000693 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL 917 (1349)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEse 917 (1349)
+..|+.++..-..++..+.-.+.++..+...++.+...+..+...+.++..++..+.-....-.. .++..+.+.|...
T Consensus 991 e~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~--~~~~~~~~~l~~~ 1068 (1486)
T PRK04863 991 RQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAE--ERARARRDELHAR 1068 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH--HHHHHhHHHHHHH
Confidence 34455555555556666666666666666666677777777777777776666666555444222 2333444777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000693 918 LDSAISEKEATGQQLASHMNTVTELTEQHSR 948 (1349)
Q Consensus 918 L~~~vsei~~l~eEik~le~qIe~Ls~els~ 948 (1349)
|+..-+-...+...+.....+|+.|...+..
T Consensus 1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~ 1099 (1486)
T PRK04863 1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKLRK 1099 (1486)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776666633
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.44 E-value=0.015 Score=72.53 Aligned_cols=216 Identities=15% Similarity=0.191 Sum_probs=110.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHH
Q 000693 324 QELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEK 403 (1349)
Q Consensus 324 ~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r 403 (1349)
++--..+|+...+.+++..++.++..|...+...+++++.++. .+..++..+++.+.+++++...+.++..+.
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~-------ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD-------TIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444566666666666667777776677777777776654 345556666666666677766666666666
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHH------HHHhc
Q 000693 404 EALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAA------AATAS 477 (1349)
Q Consensus 404 ~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~------~~~~~ 477 (1349)
......+--....+......+++++.++... |+.+...|.-++.+.+-+.+........ ...++
T Consensus 158 sAk~~eIf~~~~~L~nk~~~lt~~~~q~~tk----------l~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~t 227 (1265)
T KOG0976|consen 158 SAKAHDIFMIGEDLHDKNEELNEFNMEFQTK----------LAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENT 227 (1265)
T ss_pred hhhhHHHHHHHHHHhhhhhHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 6655555555555555555566666655544 3333334444554444444433333222 12233
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 478 QRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1349)
Q Consensus 478 qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~e 556 (1349)
|+..+-.-|+-.-+.-++..+....-++-.-...+--.+.++.....+..+..-+.++...++..+-.++.+|..+...
T Consensus 228 q~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 228 QKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred HHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333222222222333333333333333333334444444455555555555555555555555555554444444433
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=0.023 Score=72.64 Aligned_cols=168 Identities=22% Similarity=0.389 Sum_probs=105.0
Q ss_pred HHHHHHHhHHHHHhhhhHhhh----hhhhHHHHHHhhhhhhhHHHHH-hccch------hhHHHHHHH------------
Q 000693 255 EVEGQMASLQEELKGLNEKIS----EKEKVEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQR------------ 311 (1349)
Q Consensus 255 ~~e~~~~~l~ee~~~~~e~~~----k~~k~ee~~~~~~~~l~~~ee~-~~l~K------s~~~dlE~r------------ 311 (1349)
..+=+++.|++++.+-..+-+ -|+++..-+.+--.+|+.+.=+ ..+.. ..|..|+++
T Consensus 304 ~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 304 KLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred hhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 566677777777766544333 2333555555555555555444 33332 556666652
Q ss_pred -HHhHHhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHH
Q 000693 312 -FSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1349)
Q Consensus 312 -l~~ee~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~ 390 (1349)
|.+-+.+=.=+|-++...++-..+..++..-|+..+.+++..+.++..++..+..-+ .+...+++
T Consensus 384 qFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si--------------~e~~~r~~ 449 (1200)
T KOG0964|consen 384 QFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSI--------------NETKGRME 449 (1200)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------------hhhhhHHH
Confidence 333333334477788888888888888888899999999998888888876655544 44555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 391 eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
++..+.-.+...+..+...+..|=++-..++..+..+++.+.+.+.
T Consensus 450 ~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 450 EFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555556666666566666666666666665544
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.39 E-value=0.00021 Score=80.42 Aligned_cols=219 Identities=21% Similarity=0.323 Sum_probs=146.2
Q ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHh
Q 000693 381 VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLK 460 (1349)
Q Consensus 381 ~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k 460 (1349)
+|..++..+......+..+..........+.+++.++..+...+.-|++.|..+..-+.....-|..+...-.+.+.-++
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666666666666666666666666666677777777766666666655555555555555555
Q ss_pred cHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000693 461 SLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540 (1349)
Q Consensus 461 ~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~ele 540 (1349)
.|+.....++ +.|+.+...+..++..+.+..........++..++..+.....++..++..+..+.
T Consensus 82 ~lE~r~~~~e--------------eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 82 VLENREQSDE--------------ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHH--------------HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 5555444444 44444455555555556666666666677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Q 000693 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRS 613 (1349)
Q Consensus 541 ekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rqrs 613 (1349)
..+..+...+..++..-..+..+...|...|..|...++....|..+++..+..|...+...+..+...+...
T Consensus 148 ~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 148 EELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777788888888888888888888888888888888877777777555444444433
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.28 E-value=0.0031 Score=79.34 Aligned_cols=310 Identities=22% Similarity=0.272 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhH
Q 000693 728 YNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMR 807 (1349)
Q Consensus 728 l~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~k 807 (1349)
++.|+.++..+|+.+|..-+.=+.++-.+++ -.+.-+++++=+.....+.-.++++|-.++.-.-+++.+-+..+.
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elek----mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEK----MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444433333333333 112234455656666677778888888888877788855555444
Q ss_pred hhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HHHhhhhhhhHHH
Q 000693 808 ESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYF--------IKVTSLESTNEEL 879 (1349)
Q Consensus 808 k~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~--------~~l~~~E~~i~eL 879 (1349)
.| .|+.++|+-+|--..=|- ++--.||..+..+++.+++..--+..|++|++.-= -.+.++|-..-.|
T Consensus 305 em-ad~ad~iEmaTldKEmAE---ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rL 380 (1243)
T KOG0971|consen 305 EM-ADTADAIEMATLDKEMAE---ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARL 380 (1243)
T ss_pred HH-HHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHH
Confidence 44 688889998888777777 77566666665555555555555555555554321 1233333333333
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhh
Q 000693 880 QRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEAR 959 (1349)
Q Consensus 880 e~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~ 959 (1349)
+.-+..+.+ -+..-.....++-..+.-..+++.....-.+++..++..++.+|.+|.++...++=
T Consensus 381 KdalVrLRD-------lsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG-------- 445 (1243)
T KOG0971|consen 381 KDALVRLRD-------LSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG-------- 445 (1243)
T ss_pred HHHHHHHHh-------cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 333333332 22222222222222222233333334444566666666666666666666643220
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH--HHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhh
Q 000693 960 VKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEE--QAREASTVAETRKFELEETLLKLKNLESTVEELQTRS 1037 (1349)
Q Consensus 960 ~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee--~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~ 1037 (1349)
-.++...++.+ +=+|-+|+..|+-.|+.+|. +.+++ =++-++--+++ ...+++-+...+-++.-.+
T Consensus 446 -------AE~MV~qLtdk---nlnlEekVklLeetv~dlEalee~~EQ-L~Esn~ele~D-LreEld~~~g~~kel~~r~ 513 (1243)
T KOG0971|consen 446 -------AEEMVEQLTDK---NLNLEEKVKLLEETVGDLEALEEMNEQ-LQESNRELELD-LREELDMAKGARKELQKRV 513 (1243)
T ss_pred -------HHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence 03455556666 66778888888888887772 22221 12244444444 4455556656666666666
Q ss_pred hhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHh
Q 000693 1038 GHFERESGGLVETNLKLTEDLALYETKLSDLQAKL 1072 (1349)
Q Consensus 1038 ~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eL 1072 (1349)
+.+...+-..--+|.++..=+..|+.+++++.++.
T Consensus 514 ~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~ 548 (1243)
T KOG0971|consen 514 EAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQ 548 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66555566667788888888899999999988877
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.21 E-value=0.019 Score=71.06 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhcc
Q 000693 454 ELELKLKSLEEQHNETGAAAATASQ 478 (1349)
Q Consensus 454 El~~~~k~lee~~~~~e~~~~~~~q 478 (1349)
+...+.+.|-+......-.++.+|+
T Consensus 305 ~~~~L~~EL~~~~~~RDrt~aeLh~ 329 (546)
T PF07888_consen 305 EAELLRKELSDAVNVRDRTMAELHQ 329 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444444444
No 41
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.16 E-value=0.077 Score=68.76 Aligned_cols=223 Identities=12% Similarity=0.106 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHH
Q 000693 1016 LEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIED 1095 (1349)
Q Consensus 1016 ~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne 1095 (1349)
|-+.+..|...+.++...+-++..++. +.+...+-++...+...+.+++...|.. ..+.-...+..++..+.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~----L~s~A~~a~~~A~~v~~~ae~V~eaL~~----Ad~Aq~~a~~ai~~a~~ 1591 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN----LQSEAERARSRAEDVKGQAEDVVEALEE----ADVAQGEAQDAIQGADR 1591 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHH
Confidence 444555555666666666666655555 2333344444444555555555555521 13334455566666666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHhhh
Q 000693 1096 LTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKEL----EELLVNVETQ---FKEEVENVK 1168 (1349)
Q Consensus 1096 ~ir~Lrkei~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~----e~~i~~le~~---l~eEIe~Lq 1168 (1349)
.++..+..+.+.++.-.....-.++. ...|+.++..+.....--.++..- .+........ +...++.|+
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a----~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSA----TQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554444332222 222333333222221111111110 0111111111 344444444
Q ss_pred hhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1169 VSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALL 1248 (1349)
Q Consensus 1169 ~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~l 1248 (1349)
.....+..-+...+......-.+.....+--..++-+-+.....|++. .-.+ ..+++.|.....+|..|++.+..+
T Consensus 1668 ~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dL---e~~y-~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1668 KYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDL---ELEY-LRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-hhhhHHHHHHHHHhhhHHHHHHHH
Confidence 444433333333222222222122222222222222222222222221 1124 567888888899999999999999
Q ss_pred HHHHHH
Q 000693 1249 QNKVAE 1254 (1349)
Q Consensus 1249 t~eIne 1254 (1349)
...||.
T Consensus 1744 l~~I~~ 1749 (1758)
T KOG0994|consen 1744 LDHINE 1749 (1758)
T ss_pred HHHHhh
Confidence 888875
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.12 E-value=0.063 Score=66.54 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHH
Q 000693 811 MKLQDALANITSRDSEAKSFSEKLK 835 (1349)
Q Consensus 811 ~~L~eal~~~~~~~~E~~~l~k~L~ 835 (1349)
..++.+=++.-..+.|++-|-.+|.
T Consensus 378 ~el~~~e~~lqEer~E~qkL~~ql~ 402 (546)
T PF07888_consen 378 RELQMLEEHLQEERMERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555554444443
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.07 E-value=0.11 Score=67.10 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccch--------------hhhhHHHHHHH
Q 000693 771 MEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDS--------------EAKSFSEKLKN 836 (1349)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~--------------E~~~l~k~L~~ 836 (1349)
+.-.+++..-++.|+..+.....+..++..+..-+....+. |++..++..+.-+ -+..+......
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek-l~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~e 485 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK-LLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEE 485 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33346677777888888888888888877433333333322 2222222222222 22222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHH
Q 000693 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 837 lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEs 916 (1349)
+..+||.+-.-+....--...+.+....+.+.+....+....+...+..+...+.++..++..+-+.+..|+.- .+-..
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~ 564 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGA 564 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 44455555555555555556677777777777788888888888888888888888888888888888888775 33333
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 917 LLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1349)
Q Consensus 917 eL~~~vsei~~l~eEik~le~qIe~Ls~el 946 (1349)
-|....++.+.++.+.+.+...+..|..+.
T Consensus 565 ~LEq~~n~lE~~~~elkk~idaL~alrrhk 594 (1195)
T KOG4643|consen 565 LLEQNNNDLELIHNELKKYIDALNALRRHK 594 (1195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677778888888777777766655554
No 44
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.06 E-value=0.082 Score=65.50 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=105.5
Q ss_pred hhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch---HHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000693 447 QALANNAELELKLKSLEEQHNETGAAAATASQRN---LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLN 523 (1349)
Q Consensus 447 ~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~---~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~ 523 (1349)
++-.--.+|.+..+.+...+..-+++-+-+.+-. +.|++-..++.-..=+-|..-.+....+.++.+++..||..+.
T Consensus 340 ~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvq 419 (961)
T KOG4673|consen 340 DSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQ 419 (961)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 3333445666666666555555554444433322 5555544443333333444455667788899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 524 LVELKSSDSEREVREFSEKLSQ--LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 524 elq~K~~e~erei~eleekisk--Lq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
.+....+.+.+++..+...+.. ++.+|.++...|..+...-+.+.+++-.-...|+.|.++++..+--.....+.+..
T Consensus 420 a~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~ 499 (961)
T KOG4673|consen 420 ALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITK 499 (961)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Confidence 9999999999999876655433 23578888889999999999999998888888888888888776555544444444
No 45
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.04 E-value=2.6e-05 Score=100.67 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHhhhh------hhhHHHHHHHHHHHHhhhcchhhHHHHH
Q 000693 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSY--FIKVTSLE------STNEELQRQVVEANNKANNSSSENELLV 901 (1349)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~--~~~l~~~E------~~i~eLe~El~eleee~~~L~sele~l~ 901 (1349)
+++++..|+..|..++.++...+.....|+.+|..+ .......- +..|........ ...+..|..++..+.
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k-~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIK-KSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 557788888888888888888888888888887762 22333332 334555544332 334444444444444
Q ss_pred HHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 902 ETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL 950 (1349)
Q Consensus 902 ~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~ 950 (1349)
..++.++..-...-. + .|.+.+.....++..+..+|..+.-...|=-
T Consensus 580 ~~l~~le~~~~~~~~-~-~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLk 626 (722)
T PF05557_consen 580 ARLRSLEEGNSQPVD-A-VPTSSLESQEKEIAELKAELASAEKRNQRLK 626 (722)
T ss_dssp HHHHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCcc-c-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332211111 1 1223344555556666666655544444433
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.03 E-value=0.036 Score=64.74 Aligned_cols=103 Identities=15% Similarity=0.340 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 669 SKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNM 748 (1349)
Q Consensus 669 L~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l 748 (1349)
...|...+..+...|+.+..+...+...+..+.....++.............++.++..++..+......
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~---------- 118 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA---------- 118 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh----------
Confidence 3344444455555555555555544444444444444444444444444444444444444333322222
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Q 000693 749 TQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVL 788 (1349)
Q Consensus 749 ~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~L 788 (1349)
+++ +++.+... .+++.-..+.|...|..+...+
T Consensus 119 ---r~~-le~~i~~L---~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 119 ---RVD-LENQIQSL---KEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp ---HHH-HHHHHHHH---HHHHHHHHHHHHHHHHTTSTT-
T ss_pred ---HhH-HHHHHHHH---HHHHHHHHhhhhhhhhhhhhcc
Confidence 222 44445555 4445555555555555544433
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.03 E-value=0.11 Score=65.89 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHH
Q 000693 960 VKEAEIQLHEAIQRF 974 (1349)
Q Consensus 960 ~~e~~~~l~e~~~~~ 974 (1349)
..+++..+.+|..-|
T Consensus 516 ~~~V~~~f~~Ae~lF 530 (569)
T PRK04778 516 NEEVAEALNEAERLF 530 (569)
T ss_pred CHHHHHHHHHHHHHH
Confidence 444455555555555
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.01 E-value=0.016 Score=71.63 Aligned_cols=226 Identities=13% Similarity=0.191 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000693 340 ISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIAR 419 (1349)
Q Consensus 340 ~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~e 419 (1349)
+.+-....+.++-.+.+-..++..+..++++-.+.+...++.+......+.+++.++.-+...+..++..+.+|..+.+.
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333444444444445666666677777777778888888888888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch-----HHHHHHHHH-hhHH
Q 000693 420 MKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN-----LELEDIIRA-SNEA 493 (1349)
Q Consensus 420 l~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~-----~EL~~q~~~-~~~~ 493 (1349)
+...+..+...++.--..+...+. .+..|+..|+=.-..|+..+.+.+-++ ....+.+.+ ++.+
T Consensus 181 l~~~l~~~r~~ld~Etllr~d~~n----------~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~A 250 (546)
T KOG0977|consen 181 LREELARARKQLDDETLLRVDLQN----------RVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALA 250 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 777777776666655444444444 566677777777778888777777666 223333333 3333
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 494 AEEAKSQLR-ELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKIT 572 (1349)
Q Consensus 494 ~Ek~k~~l~-~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs 572 (1349)
+...+.+-+ .....+.+.+.. +...+++++....-..-..+...+.+..++..+..+...+.+++.....+.+.|.
T Consensus 251 i~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 251 IREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIE 327 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHH
Confidence 333333311 111112222211 2334444443333333333444444444444444444444444444444444444
Q ss_pred HHHHHH
Q 000693 573 QLELIL 578 (1349)
Q Consensus 573 ~LEsqL 578 (1349)
.|..++
T Consensus 328 dL~~ql 333 (546)
T KOG0977|consen 328 DLEYQL 333 (546)
T ss_pred HHHhhh
Confidence 444443
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.97 E-value=0.032 Score=65.10 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=90.8
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000693 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK--------YALLKEELDSYFIKVTSLESTNEELQRQVVEAN 887 (1349)
Q Consensus 816 al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k--------~~~l~~Ele~~~~~l~~~E~~i~eLe~El~ele 887 (1349)
.|..+|-+=..+. .+.+.|+.+=+.++.++.....+ ......++..++..+..+-.....+..+++.+.
T Consensus 5 eL~~LNdRla~YI---ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 5 ELQSLNDRLASYI---EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 3445555555555 66677777777777666665532 345777888888888888888888888888888
Q ss_pred HhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000693 888 NKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSR 948 (1349)
Q Consensus 888 ee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~ 948 (1349)
..+..+...++........++..+..+-..|.........+..++..+..+|.-+...|..
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888888877777777777777777777777777777777777777777776666643
No 50
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.94 E-value=0.13 Score=64.07 Aligned_cols=170 Identities=17% Similarity=0.212 Sum_probs=84.5
Q ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHh
Q 000693 381 VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLK 460 (1349)
Q Consensus 381 ~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k 460 (1349)
.|..++-.|.+|+=+-+++--....--....||-.+--..+.+|.=|-++...+..-..+.|+ |=+..+-
T Consensus 114 ~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~----------EREET~q 183 (786)
T PF05483_consen 114 IIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEY----------EREETRQ 183 (786)
T ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 333344444444444444433333333444555555556777777788777777776666666 3332221
Q ss_pred cHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000693 461 SLEEQHNETGAAAATASQRNLELEDIIRASNEAAE-EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREF 539 (1349)
Q Consensus 461 ~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~E-k~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~el 539 (1349)
-.-+.+..-+ -|-....+|.=|-.+.+.-.- +.|..+..++-.....++.+..-|.|++.|+.++.+-+..+.++
T Consensus 184 ly~~l~~nie----kMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl 259 (786)
T PF05483_consen 184 LYMDLNENIE----KMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDL 259 (786)
T ss_pred HHHHHhhhHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHH
Confidence 1111111110 011111333333333222221 34444555555566666666777777777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 540 SEKLSQLSTALKEVEEEKKQLHDQM 564 (1349)
Q Consensus 540 eekiskLq~EL~elE~eLeele~kl 564 (1349)
.-.++.-+..+..++..-......+
T Consensus 260 ~~~l~es~~~~~qLeE~~~~q~E~L 284 (786)
T PF05483_consen 260 LLLLQESQDKCNQLEEKTKEQHENL 284 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555544433333333
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.044 Score=67.84 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh--------hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhh
Q 000693 398 KVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE--------NFCKTDSLLSQALANNAELELKLKSLEEQHNET 469 (1349)
Q Consensus 398 ~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~--------e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~ 469 (1349)
.++..+..+..+++++=..+.-|...-..|+-.|.-+.. --...|+ |+...++.|++.+..+
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~----------El~~ar~~l~e~~~~r 108 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEA----------ELATARKLLDETARER 108 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhh----------hHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555554444 3344566 8999999998876554
Q ss_pred HHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000693 470 GAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTA 549 (1349)
Q Consensus 470 e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~E 549 (1349)
..++-.|..+..-+..++..+...+.....++.+...+..-++.++.+..-+.+.+..+++.+..++.+
T Consensus 109 -----------a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 109 -----------AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred -----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666777777888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000693 550 LKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1349)
Q Consensus 550 L~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele 593 (1349)
+..+...|..+...+.+.......+++..+.|-.++.++.....
T Consensus 178 n~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 178 NSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 99999999999999999998888888888888888888875554
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.26 Score=63.77 Aligned_cols=215 Identities=19% Similarity=0.197 Sum_probs=126.5
Q ss_pred HHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 786 RVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSY 865 (1349)
Q Consensus 786 ~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~ 865 (1349)
++.+...++..++...|..+-+|.| +|.+-+....+...++.++.|.|..=..++-+-...+...-.+-....+++.++
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e-~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ 472 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHE-ILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQL 472 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 4677888888888866665555544 355555555566666666666655444444444444444444445566777777
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000693 866 FIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQ 945 (1349)
Q Consensus 866 ~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~e 945 (1349)
.....++.-....+...+..+.+-+++..-.+..+-..+..++.....+...+...-..+..+...+..++..-.+|-.+
T Consensus 473 ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Llkq 552 (1195)
T KOG4643|consen 473 LSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQ 552 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777766666666666666666666666555555554
Q ss_pred HHHHHh--HhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000693 946 HSRALE--LHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAET 1011 (1349)
Q Consensus 946 ls~~~~--~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~ 1011 (1349)
.+.=.. .-++ +|.-.+...-.-.-+.+.+-.+|++|.-+-..+|++.+-+.-.++.
T Consensus 553 I~~Lk~t~qn~~----------~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~ 610 (1195)
T KOG4643|consen 553 IQSLKTTSQNGA----------LLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDP 610 (1195)
T ss_pred HHHHHHHhHHHH----------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 422111 1111 1111111111122233444445566666777777776554444443
No 53
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.81 E-value=0.21 Score=62.07 Aligned_cols=244 Identities=19% Similarity=0.235 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000693 673 SDKVCELASELEAFQARTSSLEVALQMANDKER----------ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELL 742 (1349)
Q Consensus 673 ~~~l~~Lk~ELE~leke~relEt~L~~~~ek~r----------eL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~L 742 (1349)
...+..++.+++.+.+....-+..|-.....+- .....++. ......++.++...+++.+..+..+
T Consensus 65 ~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k----~~~~~~e~~~lk~~lee~~~el~~~ 140 (629)
T KOG0963|consen 65 NPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNK----QQKASEENEELKEELEEVNNELADL 140 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 345666788888888888777775544444422 22222221 2225667777888888877777755
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHhhHhhhHHHHHHHHHhc
Q 000693 743 RNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN-SELESLHESLMRESEMKLQDALANIT 821 (1349)
Q Consensus 743 R~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~-~e~~~~~~~~~kk~E~~L~eal~~~~ 821 (1349)
+.. +..+.++.. .++.....++..-... .....-.+.--.+-+..|++.-.+.+
T Consensus 141 k~q----q~~v~~l~e---------------------~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~ 195 (629)
T KOG0963|consen 141 KTQ----QVTVRNLKE---------------------RLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQ 195 (629)
T ss_pred hhh----HHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 552 222222211 1112111111111100 00000111112233344444333444
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhH
Q 000693 822 SRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK----YALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSEN 897 (1349)
Q Consensus 822 ~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k----~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sel 897 (1349)
.+...+. ++...+|.-+++-+.++.+.... ..+.-+|+.-...+|+.+...+..|+.++..+...+...++..
T Consensus 196 ~q~~~le---~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 196 EQLEELE---KKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHH---HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444444 77777777777778887777755 7788899999999999998888888888888876544443332
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhH
Q 000693 898 ELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVK 961 (1349)
Q Consensus 898 e~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~ 961 (1349)
..- --.+++.+... .....+.|..+.+.|+++..-+....+-|-++++.+.
T Consensus 273 ~~~------~~~~i~~~~~~-------L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 273 KLA------KIDDIDALGSV-------LNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred hhc------cCCchHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 00222222222 2226667777777888877777777776666654443
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.72 E-value=0.4 Score=62.63 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------hhhhhhHHHHHHHHHHHHhhhcchhhHHH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVT------------SLESTNEELQRQVVEANNKANNSSSENEL 899 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~------------~~E~~i~eLe~El~eleee~~~L~sele~ 899 (1349)
.+-.+.-.|.+-+-.+++...+.+..|-..+-.|+..-. .+.-.+|.-..+|..+..++....+.+..
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n 1529 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN 1529 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 444455555555555555555555555555555554322 23334444455555555555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 900 LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1349)
Q Consensus 900 l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~el 946 (1349)
.+..+...+.+++.++. ..++..++.++.-+...+.+++..-|
T Consensus 1530 Vd~IL~~T~~di~ra~~----L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1530 VDAILSRTKGDIARAEN----LQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred HHHHHHhhhhhHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66666666666665555 22233344444444444444444333
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.71 E-value=0.43 Score=62.78 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=130.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHH------HHHHHHhhH-----HHHHhHHHHHHHHH
Q 000693 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARES------VEAVLKTQE-----AQVSNVNEELDKVS 400 (1349)
Q Consensus 332 ~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~------l~~~I~ele-----a~i~eLeeELe~~~ 400 (1349)
.+.++.+....+...+....+.+..++.+|..+..++.++...... +...+.-+. +.|-+...+|....
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~ 287 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQE 287 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666665544332 222222222 12333444444444
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccc-
Q 000693 401 KEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQR- 479 (1349)
Q Consensus 401 ~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk- 479 (1349)
.....++..+..+..++.... ..+.....-++.-|+ .+..++...+..-.++++..+.++-+
T Consensus 288 ~~i~~~qek~~~l~~ki~~~~-------~k~~~~r~k~teiea----------~i~~~~~e~~~~d~Ei~~~r~~~~~~~ 350 (1074)
T KOG0250|consen 288 EEIKKKQEKVDTLQEKIEEKQ-------GKIEEARQKLTEIEA----------KIGELKDEVDAQDEEIEEARKDLDDLR 350 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHH----------HHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 444444444443333222222 222222223333344 55555555555555555444433332
Q ss_pred --hHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 480 --NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRS-VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1349)
Q Consensus 480 --~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~-keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~e 556 (1349)
..++...+-..-....+.|..++.+.....+++... ..+..++.+...++..+..++..++..+..|..++..+...
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255555555566666666666666666666666666 66666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000693 557 KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1349)
Q Consensus 557 Leele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1349)
+...+.........+.++...+...+..++.|..-.
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666666666666666666666665555443
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.68 E-value=0.0001 Score=95.19 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhH
Q 000693 1014 FELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKL 1054 (1349)
Q Consensus 1014 ~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL 1054 (1349)
-++.+...+++..++...-|+.-...--.+.|..|..+.-|
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555555555555555555444444445455444443
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.65 E-value=0.41 Score=60.90 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 709 ESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1349)
Q Consensus 709 eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1349)
..++.+...+...+..+..+...|.++-..-..-|.++.-+..+...+-+.|-+.
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~ 159 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN 159 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444445555555555555555555555555666666666666566655555
No 58
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.43 Score=60.92 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=85.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhH---HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhh
Q 000693 822 SRDSEAKSFSEKLKNLEGQVKMYEE--QLAEAAGKYALL---KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSE 896 (1349)
Q Consensus 822 ~~~~E~~~l~k~L~~lq~qik~~q~--~~~ea~~k~~~l---~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~se 896 (1349)
+.+.|+-+|..++..+..-...--+ ..+++-++.... ..+|.........+-...+...+-+.++.+.+..+.-+
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~e 476 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQE 476 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555433332222 333333433333 33333333333344455556666666666666666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhh
Q 000693 897 NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQ 976 (1349)
Q Consensus 897 le~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~ 976 (1349)
+...+..+=+|-+...-+.-.......++.-++..+..+...++-+. .-..++.+-..-+.....
T Consensus 477 l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~-----------~~i~~leeq~~~lt~~~~---- 541 (698)
T KOG0978|consen 477 LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLE-----------LKIGKLEEQERGLTSNES---- 541 (698)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHhhh----
Confidence 66666666555555544444334444444444444444433333321 122222222222222222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHH
Q 000693 977 RDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEEL 1033 (1349)
Q Consensus 977 ~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~el 1033 (1349)
-+...+..+..-|..|.--+.++.--.+-++++++....+++++.-.+.++
T Consensus 542 ------~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 542 ------KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444455555555555555556666664444444444443333
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.22 Score=62.69 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=59.8
Q ss_pred HHHHhccchHHHHHHHHH----hhHHHHHHHHHHhhhhhhHHHHHHHHHH-HH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000693 472 AAATASQRNLELEDIIRA----SNEAAEEAKSQLRELEPRFIAAEQRSVE-LE-QQLNLVELKSSDSEREVREFSEKLSQ 545 (1349)
Q Consensus 472 ~~~~~~qk~~EL~~q~~~----~~~~~Ek~k~~l~~l~~~~~~~e~k~ke-LE-~Ql~elq~K~~e~erei~eleekisk 545 (1349)
+-..-|++..||+.||+- -.++.|.-|..+..-+.++.++++.++- .| ....++..+...-...+-.+..+...
T Consensus 362 rqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~q 441 (1118)
T KOG1029|consen 362 RQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQ 441 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333344455555555554 3344455555555555555554443321 11 12233333333333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 546 Lq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
+..++..+...+.++..++.+....+......+..+...+.-.-.+...+..+|.+
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544444444444444433444444444444
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.68 Score=62.10 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=65.8
Q ss_pred HHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHh
Q 000693 453 AELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFI----AAEQRSVELEQQLNLVELK 528 (1349)
Q Consensus 453 ~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~----~~e~k~keLE~Ql~elq~K 528 (1349)
.++..+...+.. +...-..+....+....+...+......++.+...+..+...+. ..+.+...+...+..++.+
T Consensus 298 ~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 376 (908)
T COG0419 298 REIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKE 376 (908)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 44444444445555555555555555555555555554432222 2233333333344444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000693 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1349)
Q Consensus 529 ~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele 593 (1349)
+.........+...++.+...+......+......+.........+...+..+...+..++....
T Consensus 377 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ 441 (908)
T COG0419 377 LEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQIN 441 (908)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433444444445555555555555555555555555554444444444444444444444444
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.60 E-value=0.42 Score=59.64 Aligned_cols=340 Identities=17% Similarity=0.153 Sum_probs=150.0
Q ss_pred CchhhhhhhhhhHHhhHHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhhh-HHHHHHhhhhhhhHHHHHhccch------
Q 000693 230 SHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEK-VEEELKRSNTEISAIQEELGLSK------ 302 (1349)
Q Consensus 230 ~~a~~~~qk~lelek~~~~~~~~a~~~e~~~~~l~ee~~~~~e~~~k~~k-~ee~~~~~~~~l~~~ee~~~l~K------ 302 (1349)
+-++-.+||-..|||-++++.---.++--.|++|.+++..---+ ...+ ..|. +..|.++=|| |+|
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~----I~~lm~EGEk--LSK~ql~qs 473 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEI----INQLMAEGEK--LSKKQLAQS 473 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHH----HHHHHHHHHH--hHHHHHHHH
Confidence 34556699999999999988887788888899888887642111 0111 2233 3344444444 333
Q ss_pred -------hhHHHHHHHHHhHHhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhH
Q 000693 303 -------LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNAR 375 (1349)
Q Consensus 303 -------s~~~dlE~rl~~ee~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~ 375 (1349)
..+.+-|.=+++--..|..+..+++++|+.+.+-.+.-.-++.-+.-+...+.+-+..+....+.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~-------- 545 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRAL-------- 545 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------
Confidence 23333343344444456667777777777554422222222333333333333333333333332
Q ss_pred HHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHH
Q 000693 376 ESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAM-ADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAE 454 (1349)
Q Consensus 376 ~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~-~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~E 454 (1349)
+..++++...++.-++.+++-..+..+.. +.+...-..+---+.+|...|+.+.+-.+.||.-+ -.|
T Consensus 546 ------~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~------R~E 613 (961)
T KOG4673|consen 546 ------AAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMF------RGE 613 (961)
T ss_pred ------HHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 33333333333333333332111111111 11112222333344555666666666666666511 124
Q ss_pred HHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000693 455 LELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSER 534 (1349)
Q Consensus 455 l~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~er 534 (1349)
...|.|-|.+.-+..+.-+..+---..=|=.||+.+...+-+.-. --+-.-..+..+++++..
T Consensus 614 i~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~t-----------------awereE~~l~~rL~dSQt 676 (961)
T KOG4673|consen 614 IEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAAT-----------------AWEREERSLNERLSDSQT 676 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhh-----------------HHHHHHHHHHHhhhhHHH
Confidence 555555555543333332222221113344444443332222111 111111122234444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhH
Q 000693 535 EVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSI 614 (1349)
Q Consensus 535 ei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rqrs~ 614 (1349)
.+.-.-..-+-.+.++......+-+......=+...-+.|...+..-.+|......++..+++++...+++++.+.+..+
T Consensus 677 llr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r 756 (961)
T KOG4673|consen 677 LLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIR 756 (961)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222233333344444444444444444444444555555555555555555555555555555555444444443
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.56 E-value=1.7e-05 Score=102.21 Aligned_cols=179 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHH---HHHHHHHHH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENEL---LVETNNQLK 908 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~---l~~e~~kLe 908 (1349)
.+|-.|..||-+++..+++...+...+.-|+.++.+++.++++....+..+++.+.+....+...-.. +...-....
T Consensus 363 ~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~ 442 (713)
T PF05622_consen 363 SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESS 442 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 45666777788888888888888888999999999999999999988888888877655544322111 000001111
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000693 909 SKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKV 988 (1349)
Q Consensus 909 ski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~ 988 (1349)
...+.+-.++.+ ..+..++..++.....|...+. ....+++....++|.++......=+.+.+..+.++
T Consensus 443 ~~~~~l~~El~~-----~~l~erl~rLe~ENk~Lk~~~e------~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~ 511 (713)
T PF05622_consen 443 SSGDNLSAELNP-----AELRERLLRLEHENKRLKEKQE------ESEEEKLEELQSQLEDANRRKEKLEEENREANEKI 511 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhccc-----hHHHHHHHHHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122111211 1233344444444444432221 11133555566667766666666666777788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---hhHHhHHHHHH
Q 000693 989 SVLEGQIKSYEEQAREASTVAE---TRKFELEETLL 1021 (1349)
Q Consensus 989 ~~l~~~i~~~ee~~~~~~~~~~---~~~~~~e~~~~ 1021 (1349)
..|+++|..+-..+.+.....+ .++.+++....
T Consensus 512 ~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~ 547 (713)
T PF05622_consen 512 LELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLE 547 (713)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 8888888766655555444333 34444444333
No 63
>PRK11637 AmiB activator; Provisional
Probab=97.54 E-value=0.04 Score=67.40 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=34.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 501 LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELI 577 (1349)
Q Consensus 501 l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsq 577 (1349)
+..+...+..+......++.+...+.....+...+...+.....+.+..+..+...+......+..+......|...
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555444444444444444444444444444444444444444444443333333333
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.51 E-value=0.18 Score=58.28 Aligned_cols=222 Identities=17% Similarity=0.233 Sum_probs=130.3
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 000693 812 KLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1349)
Q Consensus 812 ~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~ 891 (1349)
+|.+.++.++.++.+.. .+++.+-.+.-.+-.++.+.+.++.++.++..++...+..+-..+.++...+..+-....
T Consensus 17 ~lk~~~~e~~ekR~El~---~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 17 QLKEEIEELKEKRDELR---KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777776666 777777777777777777777777777777777777666665555555555555555444
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHH
Q 000693 892 NSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAI 971 (1349)
Q Consensus 892 ~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~ 971 (1349)
.+...........+.+++--..++. |...+.+....-..=..+...|.+|...+...- +..+...++.+-+
T Consensus 94 ~l~e~~~~~~~~~~~~~~ler~i~~-Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~--------k~~e~~~~~~el~ 164 (294)
T COG1340 94 ELKEKRNEFNLGGRSIKSLEREIER-LEKKQQTSVLTPEEERELVQKIKELRKELEDAK--------KALEENEKLKELK 164 (294)
T ss_pred HHHHHhhhhhccCCCHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 4444444222111222222222222 222222222222222233333333333331111 2334444555555
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhh
Q 000693 972 QRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESG 1045 (1349)
Q Consensus 972 ~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLr 1045 (1349)
.-+-.--.+..++.+++.+|=.++..|-++.......+|-++-+.++...++-.....+..+...+..+.+.|+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555689999999999999999999999988888888888888777777766666666555555555333
No 65
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.89 Score=61.03 Aligned_cols=32 Identities=44% Similarity=0.559 Sum_probs=17.6
Q ss_pred hhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHh
Q 000693 1011 TRKFELEETLLKLKNLESTVEELQTRSGHFER 1042 (1349)
Q Consensus 1011 ~~~~~~e~~~~kLe~~e~~v~elk~k~~~~Es 1042 (1349)
..+.++++....+....+.+..+......+++
T Consensus 583 ~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~ 614 (908)
T COG0419 583 TRKEELEELRERLKELKKKLKELEERLSQLEE 614 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.44 E-value=0.95 Score=59.79 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHH
Q 000693 895 SENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRF 974 (1349)
Q Consensus 895 sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~ 974 (1349)
.+.-.+....+..+..+..++..++.....+.....++++....+.+|.-. . +..+.-.+.+.+...-+......+
T Consensus 675 ~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~---~-e~~~~~~~~~~~l~~ei~~~~~eI 750 (1074)
T KOG0250|consen 675 KEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT---A-EEKQVDISKLEDLAREIKKKEKEI 750 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h-hhhhcchhhhHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666666665443 1 333344444445555555555555
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHh-
Q 000693 975 TQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLK- 1053 (1349)
Q Consensus 975 ~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~r- 1053 (1349)
...++..-+|.+.+..++......++ --++.+..+.....++..+...+....+++...+. ...+-+++.+
T Consensus 751 e~~~~~~e~l~~e~e~~~~e~~e~~~-------~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~-~~~HyE~~~K~ 822 (1074)
T KOG0250|consen 751 EEKEAPLEKLKEELEHIELEAQELEE-------YYAAGREKLQGEISKLDALKEELKLREDKLRSAED-EKRHYEDKLKS 822 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Confidence 55555555555555444443333332 22333334444444555555555544444444444 3344444444
Q ss_pred HHHHHHHHHHhHHHH
Q 000693 1054 LTEDLALYETKLSDL 1068 (1349)
Q Consensus 1054 L~~EI~~le~qi~dL 1068 (1349)
...++...+.....+
T Consensus 823 ~l~~l~~~E~~~~~~ 837 (1074)
T KOG0250|consen 823 RLEELKQKEVEKVNL 837 (1074)
T ss_pred hhHHHHHHHHHHHhh
Confidence 444444444444443
No 67
>PF13514 AAA_27: AAA domain
Probab=97.37 E-value=1.4 Score=60.38 Aligned_cols=257 Identities=21% Similarity=0.255 Sum_probs=103.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHH-hhhhhHHHHHhhhhhhHh------hhhchHHHHHh
Q 000693 981 ANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLK-NLESTVEELQTRSGHFER------ESGGLVETNLK 1053 (1349)
Q Consensus 981 ~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe-~~e~~v~elk~k~~~~Es------eLrk~v~~i~r 1053 (1349)
...|+..+..++..+...+.....+...-......+..+...+- .-..........+..+.. .+..+-..|..
T Consensus 675 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~ 754 (1111)
T PF13514_consen 675 REQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQ 754 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444444443333331 001111222222233333 13333334445
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhcccc----cCHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHH-------HHHH
Q 000693 1054 LTEDLALYETKLSDLQAKLSATIVEKD----ETVEQLHASKKAI---EDLTQKLTSEVQGLQTQLEAQL-------NEKK 1119 (1349)
Q Consensus 1054 L~~EI~~le~qi~dL~~eLs~~s~g~~----~TveELQ~~q~~~---ne~ir~Lrkei~~Lq~eke~k~-------~eis 1119 (1349)
+..++..+..++..|-..+. ..... ..+..|....... ...+..+...+..+..+..... ..+.
T Consensus 755 ~~~~~~~f~~~~~~L~~~l~--~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~ 832 (1111)
T PF13514_consen 755 MEADLAAFEEQVAALAERLG--PDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELA 832 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHcC--cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555655555553 11111 2333333322211 1222223333333333333333 3333
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHH
Q 000693 1120 ATEETF----KSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNAL 1195 (1349)
Q Consensus 1120 ~LE~~i----k~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~ 1195 (1349)
.|.... ...+..+......+..+...+..++..+...... ..+..+..... ....+.+..+.......+...
T Consensus 833 ~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~~~~~l~~e~~--~~d~~~l~~~l~~l~~~l~~l 908 (1111)
T PF13514_consen 833 ELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADG--LDLEELEEELE--ELDPDELEAELEELEEELEEL 908 (1111)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--ccHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHH
Confidence 332222 2224444444555555666666665555332221 01111111110 012223333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1196 YEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEA 1245 (1349)
Q Consensus 1196 ~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~le~ei 1245 (1349)
...+..+..++-.+...|....+ ...+ .....++.....+|...-.+.
T Consensus 909 ~~~~~~l~~~~~~~~~~l~~l~~-~~~~-a~l~~e~e~~~a~l~~~~~~~ 956 (1111)
T PF13514_consen 909 EEELEELQEERAELEQELEALEG-DDDA-AELEQEREEAEAELEELAEEW 956 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556666655522 1233 334445555555555444433
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.28 E-value=0.066 Score=67.40 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000693 389 VSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1349)
Q Consensus 389 i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~ 443 (1349)
+.+++.+++.+......+...+..+..++..+......+++.|..+...+.+.+.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~ 269 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443334433334444444444444444333
No 69
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.10 E-value=2.4 Score=57.50 Aligned_cols=96 Identities=22% Similarity=0.203 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000693 668 GSKQYSDKVCELASELEAFQARTSSLEVALQMANDKER-ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDL 746 (1349)
Q Consensus 668 eL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~r-eL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El 746 (1349)
.+.....++..+......+......++......+-.+. .....+..........-..+.+|-.-|+.++..+...|-.+
T Consensus 575 ~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l 654 (1294)
T KOG0962|consen 575 ELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDL 654 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhh
Confidence 33333344444444444444444444443333333333 33344444455555555666777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000693 747 NMTQERLESIEKDLKAA 763 (1349)
Q Consensus 747 ~l~q~k~esiE~~l~~~ 763 (1349)
.+++.....++.-|.-.
T Consensus 655 ~~lq~~s~~Y~k~Ie~~ 671 (1294)
T KOG0962|consen 655 AMLQGRSALYRKFIEIA 671 (1294)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 88888888777755544
No 70
>PRK11637 AmiB activator; Provisional
Probab=97.06 E-value=0.27 Score=60.33 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=5.4
Q ss_pred HHHHHHHhHhhhHHH
Q 000693 350 AKENLHAKVSELEDI 364 (1349)
Q Consensus 350 ~~~~l~~k~~el~~~ 364 (1349)
++.++.....++..+
T Consensus 52 l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 52 IQQDIAAKEKSVRQQ 66 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 71
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.06 E-value=1.1 Score=52.87 Aligned_cols=259 Identities=18% Similarity=0.257 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHH
Q 000693 654 QISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLN-AAADEKRKLQDTSNGYNEKL 732 (1349)
Q Consensus 654 qis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqle-e~e~~k~~LE~EieEl~~qL 732 (1349)
.+..+.++...+.++.......+.+...-.+.++.-||++...-.............-. ....-...+...+.+++.++
T Consensus 44 ~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ 123 (309)
T PF09728_consen 44 QLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQM 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555556667777776644444443222222221 22444556777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHH
Q 000693 733 AEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMK 812 (1349)
Q Consensus 733 eElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~ 812 (1349)
++-...-..+..+-..+..++..+=..-..+ +.-|....+...-++.-+.+-|+..+....... +....--+.=
T Consensus 124 ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~---~k~~~~~~~~ 197 (309)
T PF09728_consen 124 EEQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK---EKAKQEKEIL 197 (309)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHH
Confidence 7777766677777777777777665544444 667776666666555555566655543332222 1222222222
Q ss_pred HHH--HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 000693 813 LQD--ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKA 890 (1349)
Q Consensus 813 L~e--al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~ 890 (1349)
|.+ ++..+.....+.. .||.-+-+...++|.-+.-.-..+.+.+.|++.+.-.+..+|.....+.........-+
T Consensus 198 l~~~~~~~~~~~~E~~Lr---~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 198 LEEAAQVQTLKETEKELR---EQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333 3333333333333 44444444444444444444477789999999999999999999999888888888888
Q ss_pred hcchhhHHHHHHHHHHHHHhHHHHHHHhhHH
Q 000693 891 NNSSSENELLVETNNQLKSKVAELQELLDSA 921 (1349)
Q Consensus 891 ~~L~sele~l~~e~~kLeski~~LEseL~~~ 921 (1349)
..+..+...+...+..+...+..|++-++..
T Consensus 275 ~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 275 IEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888844443
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.04 E-value=1.8 Score=55.12 Aligned_cols=210 Identities=19% Similarity=0.219 Sum_probs=111.0
Q ss_pred hhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHh
Q 000693 873 ESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSR-ALE 951 (1349)
Q Consensus 873 E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~-~~~ 951 (1349)
+..+..+...+..+...+..+ .+......+..+..+|+.+=..|...+.-..........+...|.++..+-.. ..|
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333 44555566666777777776666666666666555555555555554433311 111
Q ss_pred HhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHH
Q 000693 952 LHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVE 1031 (1349)
Q Consensus 952 ~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~ 1031 (1349)
+ ..+...|.-....-..++.+.+.+..++.....+........++--.+...+++....+...+....
T Consensus 329 ~------------~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 329 L------------ERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred H------------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122233111123345677788888888888888888888777777788888876666666666666
Q ss_pred HHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1032 ELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQ 1105 (1349)
Q Consensus 1032 elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~ 1105 (1349)
.+...+..+...-...-..+.+|...+......|.. .+=.+-+++.........+.+..+...++
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek---------~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK---------SNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555555543333333333444444333333332 11223334444444444444444444443
No 73
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.04 E-value=1.8 Score=54.99 Aligned_cols=453 Identities=18% Similarity=0.206 Sum_probs=211.0
Q ss_pred HhcHHHHhhhhHHHHHHhccch-HHHHHHHHHhhHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHhhh
Q 000693 459 LKSLEEQHNETGAAAATASQRN-LELEDIIRASNEAAEEAKSQLRELEPR-------FIAAEQRSVELEQQLNLVELKSS 530 (1349)
Q Consensus 459 ~k~lee~~~~~e~~~~~~~qk~-~EL~~q~~~~~~~~Ek~k~~l~~l~~~-------~~~~e~k~keLE~Ql~elq~K~~ 530 (1349)
.+.|++.+..|..++..+.+-| .+|.. +..+.+..-..|.+++.. ++.+......|..|++-.+..+.
T Consensus 139 q~ELee~q~~Hqeql~~Lt~aHq~~l~s----L~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le 214 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSSLTQAHQEALAS----LTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELE 214 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556677777777777777776 22221 122222222223333333 33333333444444444444443
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhh
Q 000693 531 DSEREVREFSEKLSQLS---TALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1349)
Q Consensus 531 e~erei~eleekiskLq---~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k 607 (1349)
....-+..+..-|+..- .....++.+-..+...+..++..-..|......++.|+..|.+-+..-.+++.....-.+
T Consensus 215 ~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d 294 (739)
T PF07111_consen 215 AQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSD 294 (739)
T ss_pred HHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 33333333333332222 111234566677778888888888888888888888988888888744444444111111
Q ss_pred hh-hhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000693 608 MS-HQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAF 686 (1349)
Q Consensus 608 ~~-rqrs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~l 686 (1349)
.. ..-..-...++..|+.+....--.+...+.... .....+..+++.|++......++-+-+..-+.+..++++--
T Consensus 295 ~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~---~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevE 371 (739)
T PF07111_consen 295 PLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHR---DSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVE 371 (739)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 111234456677888877665544433222111 11122334444444444333333333333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 000693 687 QARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAEN-------LLELLRNDLNMTQERLESIEKD 759 (1349)
Q Consensus 687 eke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~-------~Le~LR~El~l~q~k~esiE~~ 759 (1349)
......+-..+.........+..+.......++.+-..+..+...|.--.. .|-.|-+.+.-.-.++.-|-|=
T Consensus 372 Rv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL 451 (739)
T PF07111_consen 372 RVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGL 451 (739)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHH
Confidence 222222233333333333334444444444444444444433332221111 1222222222222222222221
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHH
Q 000693 760 LKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEG 839 (1349)
Q Consensus 760 l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~ 839 (1349)
++-+ +-.++-.. + +..-+- ..--++...|+.-=+--|+.+++.+ |+-. -++.
T Consensus 452 ~Ark----------~Alaqlrq---------e--~~~~~p----p~~~dL~~ELqqLReERdRl~aeLq-lSa~--liqq 503 (739)
T PF07111_consen 452 MARK----------LALAQLRQ---------E--QCPPSP----PSVTDLSLELQQLREERDRLDAELQ-LSAR--LIQQ 503 (739)
T ss_pred HHHH----------HHHHHHHh---------c--cCCCCC----CchhhHHHHHHHHHHHHHHHHHHHH-HhHH--HHHH
Confidence 1111 11000000 0 000011 0011222222222222233333333 1111 1222
Q ss_pred HHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHH-HHHHhHHHH
Q 000693 840 QVKMYEEQLA----EAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNN-QLKSKVAEL 914 (1349)
Q Consensus 840 qik~~q~~~~----ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~-kLeski~~L 914 (1349)
.|.....+.. ........|..++.+....++.++.....+...+.+.......+..++...-.... .|..++.++
T Consensus 504 eV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 504 EVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 12255567777777778888888888888888888888778888888877764444 788888999
Q ss_pred HHHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHH
Q 000693 915 QELLDSAISEKEATGQQ-LASHMNTVTELTEQH 946 (1349)
Q Consensus 915 EseL~~~vsei~~l~eE-ik~le~qIe~Ls~el 946 (1349)
++.|....++++.--++ =+.+...|-.|..-.
T Consensus 584 Esrl~E~L~~~E~rLNeARREHtKaVVsLRQ~q 616 (739)
T PF07111_consen 584 ESRLREQLSEMEKRLNEARREHTKAVVSLRQIQ 616 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877654444 455666666654433
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=2.3 Score=56.18 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=33.8
Q ss_pred hhhHHhHHHHHHHHHhhhhhHHHHHhhhhhh-HhhhhchHHHHHhHHHHHH
Q 000693 1010 ETRKFELEETLLKLKNLESTVEELQTRSGHF-ERESGGLVETNLKLTEDLA 1059 (1349)
Q Consensus 1010 ~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~-EseLrk~v~~i~rL~~EI~ 1059 (1349)
...-.|||.+....+.....+...+.++-+. ..-..+....|.+..+++.
T Consensus 964 ~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Lt 1014 (1141)
T KOG0018|consen 964 QEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELT 1014 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345678888888888888888777766543 3323566666777777766
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.02 E-value=2 Score=55.16 Aligned_cols=40 Identities=13% Similarity=0.328 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000693 317 ALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHA 356 (1349)
Q Consensus 317 ~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~ 356 (1349)
.+|..+..++..++.+-......|.+|++.+.+|+.+++.
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445566666777766666667777777777777765553
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.00 E-value=2 Score=54.79 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=83.1
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHH-----hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000693 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRA-----SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELK 528 (1349)
Q Consensus 454 El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~-----~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K 528 (1349)
-...++|.+-+.....|.++..+-++...++..+.. ..+...+|+..|..+......++.....+=.-+..++..
T Consensus 144 ~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~ 223 (560)
T PF06160_consen 144 KYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKE 223 (560)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456677888888888888888888888888888887 445566677777777777777666666665555555443
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 529 SSDSEREVREFSEKLSQLSTA---LK--EVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 529 ~~e~erei~eleekiskLq~E---L~--elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
+-+ ++.++..-+.++... +. .....+..+...+......+..| .+......+..+.+.++.+-..++.
T Consensus 224 ~P~---ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~ 296 (560)
T PF06160_consen 224 FPD---QLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEK 296 (560)
T ss_pred hHH---HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 333333333333332 11 23334444444444444444333 2334445555555555555555554
No 77
>PF13514 AAA_27: AAA domain
Probab=97.00 E-value=3.1 Score=57.16 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hHhHhHHhhhHHHHHHHHHHHHHHhhhhhh
Q 000693 902 ETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL-ELHSATEARVKEAEIQLHEAIQRFTQRDIE 980 (1349)
Q Consensus 902 ~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~-~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~ 980 (1349)
........+...++..+............++..+...+..+.......+ ++-=........+.. .-+.+..+.....+
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~-~l~~l~~l~~~~~~ 744 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALE-ALELLEELREALAE 744 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 3333344444455555555555555556666666666666665553211 110011111222222 22344555555666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 000693 981 ANNLNEKVSVLEGQIKSYEEQAREA 1005 (1349)
Q Consensus 981 ~~~l~~~~~~l~~~i~~~ee~~~~~ 1005 (1349)
...+..++..++..+..|+.++..-
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888776653
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.90 E-value=2.2 Score=53.85 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=66.2
Q ss_pred hchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000693 1045 GGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEET 1124 (1349)
Q Consensus 1045 rk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ 1124 (1349)
|...-.+.+....+.-+++.+..|..+.. .+...+++||..-+.+..++-.-.+.++.+.-.....
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvE----nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L---------- 641 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVE----NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKL---------- 641 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33444555666666666666666655442 2466778888877766666655555444443332222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHH
Q 000693 1125 FKSEIESLKAQA-AEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNA 1194 (1349)
Q Consensus 1125 ik~~I~~le~~L-~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~ 1194 (1349)
...+.++.+.. ..-..+...|++... .+..+..+|+.+..-...|-..-.++--+.-++..+|-.
T Consensus 642 -~~E~e~~kk~~eE~~~~~~keie~K~~----~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVA 707 (786)
T PF05483_consen 642 -QEELENLKKKHEEETDKYQKEIESKSI----SEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVA 707 (786)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22244444443 233334444443221 223355666666665555554444444444444444433
No 79
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=2.5 Score=54.35 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhH-HHH-HHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000693 857 LLKEELDSYFIKVTSLESTNE-ELQ-RQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLAS 934 (1349)
Q Consensus 857 ~l~~Ele~~~~~l~~~E~~i~-eLe-~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~ 934 (1349)
-+.+|++.+.-.+..+.+... .+. ...+....++.......+.+.......+ ...+++..+..-+-+
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-----------~ll~e~~t~gsA~ed 465 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK-----------CLLSEMETIGSAFED 465 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 456777777766655544332 222 1223333323333333333333222222 223333334444444
Q ss_pred HHhhHHHHHHHH----HHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000693 935 HMNTVTELTEQH----SRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAE 1010 (1349)
Q Consensus 935 le~qIe~Ls~el----s~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~ 1010 (1349)
...++..|..++ .....+++...+-+......+.+ .+.+.. .+..|....+.+.-.|+.+|+|.+.=.....
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~e-k~~l~~---~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~ 541 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREE-KSKLEE---QILTLKASVDKLELKIGKLEEQERGLTSNES 541 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 566666666666 55777777777665554443333 222222 2455566667777788888888887777666
Q ss_pred hhHHhHHHHHHHHHhhhhhHHHHHhh
Q 000693 1011 TRKFELEETLLKLKNLESTVEELQTR 1036 (1349)
Q Consensus 1011 ~~~~~~e~~~~kLe~~e~~v~elk~k 1036 (1349)
....++.--...++.+...+.+....
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~ 567 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQS 567 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554333333443333333333
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.85 E-value=0.79 Score=59.42 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 643 AEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQ 722 (1349)
Q Consensus 643 ~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE 722 (1349)
..+.|.++++..+..|+..++.-+..+..+..+...+..--..-..++..+-..|...+.+-..|...+..=++-+-.|=
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556666666666666666666665555555554443320112344555555666666665566666666666677777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 723 DTSNGYNEKLAEAENLLELLRNDLNMTQERLE 754 (1349)
Q Consensus 723 ~EieEl~~qLeElE~~Le~LR~El~l~q~k~e 754 (1349)
..+++-+++|+.+++.+-....|+..++.++.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666665
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.74 E-value=1.9 Score=50.87 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000693 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1349)
Q Consensus 650 ELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~ 729 (1349)
++..+++..-.+...|...+..-......++.+++...+.+..++..-.....+...-...+-++...+..+..++..+.
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777777777777777777777777777777776666666666666666667777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 000693 730 EKLAEAENLLELLRN 744 (1349)
Q Consensus 730 ~qLeElE~~Le~LR~ 744 (1349)
.++.-+++...+|+.
T Consensus 293 ~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 293 KKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777666665554
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.71 E-value=0.14 Score=53.64 Aligned_cols=98 Identities=27% Similarity=0.378 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 492 EAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI 571 (1349)
Q Consensus 492 ~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kI 571 (1349)
.-.+.+-..+..++...-.++.....++.+|..|+.|+..++.++..+...+...+..+...+..... .+.+...|
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rri 82 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRI 82 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhH
Confidence 33333334455555555555555555556666666666666666555555555555555444333222 22445555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 000693 572 TQLELILNQSNTRSSELEEELR 593 (1349)
Q Consensus 572 s~LEsqLk~LqsrireLEEele 593 (1349)
..|+-.+.....++....+.+.
T Consensus 83 q~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444444
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.62 E-value=1.2 Score=57.76 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000693 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAG 764 (1349)
Q Consensus 685 ~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~ 764 (1349)
.++.++..+...|...+....+|..++.-+...-+.+..++..++..-+.++.++..|-.... .|-+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq----------~DKq~l- 490 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ----------QDKQSL- 490 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-
Confidence 334444444455555555555666665555444455555555555555555555443332211 111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000693 765 LRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1349)
Q Consensus 765 ~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1349)
..++-+++...++--.+++.|-++++.|-...
T Consensus 491 ---~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 491 ---QQLEKRLAEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22444555556666677777777776665544
No 84
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=4.2 Score=51.96 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000693 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDS 532 (1349)
Q Consensus 503 ~l~~~~~~~e~k~keLE~Ql~elq~K~~e~ 532 (1349)
.++.+-++++++++-|+.|-..-..++...
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqk 350 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQK 350 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666555444444333
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.49 E-value=0.23 Score=52.19 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=69.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1349)
Q Consensus 502 ~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~L 581 (1349)
..|..-..++..+...++.++..+..+....+.+|..|..+++.+..++..+...+..+...+..-....+..+ .+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HH
Confidence 34555667777788888888888888888888888888888888888888888888888877777766555544 56
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 000693 582 NTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 582 qsrireLEEele~L~EeLeE 601 (1349)
+-++..|++++......+.+
T Consensus 79 ~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 66666666666544444444
No 86
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.43 E-value=5.5 Score=52.29 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=72.0
Q ss_pred HHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhh----------HHHHHHHHHHhhhhhhHHHHHHHHHHHH---
Q 000693 453 AELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASN----------EAAEEAKSQLRELEPRFIAAEQRSVELE--- 519 (1349)
Q Consensus 453 ~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~----------~~~Ek~k~~l~~l~~~~~~~e~k~keLE--- 519 (1349)
.|....+|+.+..+.+|= +--+|+.-|+.-++-++ |++-+-|..|..+.......+.++--.-
T Consensus 169 ~E~~~~~~~ae~a~kqhl----e~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~ 244 (769)
T PF05911_consen 169 EEREYSRRAAEAASKQHL----ESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSS 244 (769)
T ss_pred HHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccc
Confidence 355666677776666663 23356677777777633 6666677777776443333222211111
Q ss_pred ------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 520 ------QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1349)
Q Consensus 520 ------~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqL 578 (1349)
...........-+..++-.+++...-|+.-|.....+|............+++.++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 245 PHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223333444555556666677777777777777777777777778888888888
No 87
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=4.6 Score=51.42 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSR 794 (1349)
Q Consensus 715 e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~ 794 (1349)
...+..++..+.++.....-..+.+..+..++.++...+..+++.+..- +.++......+....-...+.+.
T Consensus 143 ~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~---eke~~~~~~ql~~~~q~~~~~~~----- 214 (716)
T KOG4593|consen 143 LELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNE---EKELDRQHKQLQEENQKIQELQA----- 214 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3445555666666666666666777777777777777777777755555 44444333333222222111111
Q ss_pred hhhhhhhHHHhhHhhhHHHHH--HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 000693 795 NSELESLHESLMRESEMKLQD--ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSL 872 (1349)
Q Consensus 795 ~~e~~~~~~~~~kk~E~~L~e--al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~ 872 (1349)
+......|.......+.+|-. .+++.|..=.++..=.+.|.+-..|.++--..+.+-+.-+..+++|++.++.++..+
T Consensus 215 ~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 215 SLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 112223344556666666655 566666554444422222222222222222222344466677888888887777655
Q ss_pred h
Q 000693 873 E 873 (1349)
Q Consensus 873 E 873 (1349)
+
T Consensus 295 ~ 295 (716)
T KOG4593|consen 295 E 295 (716)
T ss_pred H
Confidence 4
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.21 E-value=6.3 Score=50.74 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 720 KLQDTSNGYNEKLAEAENLLELLRNDLNMTQE 751 (1349)
Q Consensus 720 ~LE~EieEl~~qLeElE~~Le~LR~El~l~q~ 751 (1349)
..-.++...+..|+.+....+.|+..+.++..
T Consensus 283 ~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 283 MAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 33445555555666666666666666554433
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.17 E-value=2.8 Score=46.36 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000693 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1349)
Q Consensus 510 ~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLE 589 (1349)
+--.++..|..++.+++.++.++..+-.-+..-.-+-...|..++..-+.+-.-|..+...|..|...+.....+.+.++
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777776666665555555555555555555555555556666666666666665555555555
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000693 590 EELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKC----EEA 665 (1349)
Q Consensus 590 Eele~L~EeLeE~e~r~k~~rqrs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~----k~~ 665 (1349)
..+.....++-...+.. ..+..++.. ..| ..-+.+...+.....++++.+..+..|++++ +.|
T Consensus 89 ~klk~~~~el~k~~~~l-------~~L~~L~~d--knL----~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDEL-------KHLKKLSED--KNL----AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHc--CCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55554444443322222 222222100 001 0012222234444445555555555566555 555
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 666 EAGSKQYSDKVCELASELEAFQARTSSLEVAL 697 (1349)
Q Consensus 666 eqeL~el~~~l~~Lk~ELE~leke~relEt~L 697 (1349)
...+..+......+..++..+..++..+...+
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555444433
No 90
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.15 E-value=7 Score=50.74 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=42.7
Q ss_pred hHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000693 1047 LVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNE 1117 (1349)
Q Consensus 1047 ~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~e 1117 (1349)
....+..+..++..++.+++.|..++. .......+..++.....++..+..+..++..+..+.......
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~--~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIS--TIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999996 222223444444445555555555555555555554444433
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.14 E-value=3.8 Score=47.68 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 000693 732 LAEAENLLELL 742 (1349)
Q Consensus 732 LeElE~~Le~L 742 (1349)
|.+++..+..|
T Consensus 237 lre~~k~ik~l 247 (294)
T COG1340 237 LRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=5.7 Score=49.65 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH---HHHHH
Q 000693 700 ANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVM---EKLKS 776 (1349)
Q Consensus 700 ~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~---~k~k~ 776 (1349)
++...+.+......+......+...++.++..+++.+..++.++.+.+.++-.++ -.|+.-++|+ --|..
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie-------~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE-------LQGISGEDVERMNLERNK 343 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHH
Confidence 3333444444445556666666666677777777777777766666666555555 2355555554 33666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcc
Q 000693 777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITS 822 (1349)
Q Consensus 777 ~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~e---al~~~~~ 822 (1349)
+.+.|..++..++..++.--++...++...+.+|..+.+ ++..+..
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l 392 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKL 392 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999988887777777777888888866655 4444443
No 93
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.11 E-value=0.0015 Score=84.70 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 825 SEAKSFSEKLKNLEGQVKMYEEQLAEAA 852 (1349)
Q Consensus 825 ~E~~~l~k~L~~lq~qik~~q~~~~ea~ 852 (1349)
.+....++++..++.||.+++..+.+..
T Consensus 502 ~~~~~~~~~~~~lq~qle~lq~~l~~~~ 529 (713)
T PF05622_consen 502 EENREANEKILELQSQLEELQKSLQEQG 529 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444566666666666665554433
No 94
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=7 Score=49.89 Aligned_cols=243 Identities=19% Similarity=0.147 Sum_probs=124.8
Q ss_pred hHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000693 806 MRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQ 882 (1349)
Q Consensus 806 ~kk~E~~L~e---al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~E 882 (1349)
......++++ ..-+.|-..+-.+.|++.|+.++.-++.|--+..++-+.+...+.-..++...+.+.-+.+..++.=
T Consensus 362 ~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~l 441 (716)
T KOG4593|consen 362 LERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGL 441 (716)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHH
Confidence 4466667777 5666777778888999999999999999988888887666655555555555554444444433332
Q ss_pred HHHHHHhhh-------cchhhHHHHHHHHHHHHHhHHHHHHHhhHH---------HHH-----HHHHHHHHHHHHhhHHH
Q 000693 883 VVEANNKAN-------NSSSENELLVETNNQLKSKVAELQELLDSA---------ISE-----KEATGQQLASHMNTVTE 941 (1349)
Q Consensus 883 l~eleee~~-------~L~sele~l~~e~~kLeski~~LEseL~~~---------vse-----i~~l~eEik~le~qIe~ 941 (1349)
+..+..-.. .....+........+++..+.++.+.|... .++ +..+..++..+...-.+
T Consensus 442 V~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~r 521 (716)
T KOG4593|consen 442 VQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDR 521 (716)
T ss_pred HHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222222211 122222222222333344444444444332 222 55566666666666666
Q ss_pred HHHHHHHHH--hHhHhHHhhhHHH-----------HHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---HHHHHHHHHHHh
Q 000693 942 LTEQHSRAL--ELHSATEARVKEA-----------EIQLHEAIQRFTQRDIEANNLNEKVSVLEG---QIKSYEEQAREA 1005 (1349)
Q Consensus 942 Ls~els~~~--~~~~~~~~~~~e~-----------~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~---~i~~~ee~~~~~ 1005 (1349)
|..++.+-+ .--..+.+||... -....++++. |...|-+.+.+|++ ++...+ .-..
T Consensus 522 Lr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~Lqa------E~~~lk~~l~~le~~~~~~~d~~--i~~~ 593 (716)
T KOG4593|consen 522 LRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQA------ELERLKERLTALEGDKMQFRDGE--IAVH 593 (716)
T ss_pred HHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCCcccchh--hHHh
Confidence 665552211 1112222333221 1122222222 23333333333333 222222 1111
Q ss_pred hhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHH
Q 000693 1006 STVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDL 1058 (1349)
Q Consensus 1006 ~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI 1058 (1349)
+.... -.+|-....++...+..+..++.-...--.+.+..|-.+.-|.-++
T Consensus 594 s~~~~--~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~ 644 (716)
T KOG4593|consen 594 SLLAF--SKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDF 644 (716)
T ss_pred hhhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 11111 1356666667777777777777766666666677777777776655
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.02 E-value=7.4 Score=49.89 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000693 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE--KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1349)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~e--Leele~klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1349)
.-..+..+..+...+..++......+.+|..++..+.+. -+.+..+|-++.+-|..-..+|...-.-.+.+..+++.+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444433 223344445555555544455554445555555555544
Q ss_pred HHHHhh
Q 000693 596 KERSAE 601 (1349)
Q Consensus 596 ~EeLeE 601 (1349)
..++..
T Consensus 525 ~gkL~R 530 (594)
T PF05667_consen 525 TGKLDR 530 (594)
T ss_pred HHHHHh
Confidence 444444
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.86 E-value=6.5 Score=47.96 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000693 513 QRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1349)
Q Consensus 513 ~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1349)
..+..|...+..+..-...+..+..++.............+...+.+.......+...+...++.+..+...-..|...+
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHh
Q 000693 593 RITKERSA 600 (1349)
Q Consensus 593 e~L~EeLe 600 (1349)
.++..+.+
T Consensus 241 as~e~~aA 248 (420)
T COG4942 241 ASAEAAAA 248 (420)
T ss_pred HHHHHHHH
Confidence 55544444
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=5 Score=51.70 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 000693 379 EAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLR 432 (1349)
Q Consensus 379 ~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~ 432 (1349)
..-|++++.+++.++.....+.-.++.++..+.+..+..+.+..-++-|.-+|+
T Consensus 663 K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 663 KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555555555555555555555555555555555555555555554
No 98
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.63 E-value=9.6 Score=48.19 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000693 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQ 882 (1349)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~E 882 (1349)
+++-.-.=+|.||.+++-+.+++...++.+...=..|-.+=-..|-+..-
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa 109 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASA 109 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHH
Confidence 35555566999999999999999999999999888887776666666553
No 99
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.63 E-value=14 Score=49.98 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=63.5
Q ss_pred chHHHHHHHhcHHHHhhhhHHHHHHhcc---chHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000693 451 NNAELELKLKSLEEQHNETGAAAATASQ---RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVEL 527 (1349)
Q Consensus 451 ~~~El~~~~k~lee~~~~~e~~~~~~~q---k~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~ 527 (1349)
.+..+..+++.|++.+..--+.++...+ .+.++..+|++........-..+..++..+.......+.+-.-......
T Consensus 537 ~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~ 616 (1317)
T KOG0612|consen 537 SLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERR 616 (1317)
T ss_pred HHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777766665555554433 3377888888754433344444555555555555555555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 528 KSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1349)
Q Consensus 528 K~~e~erei~eleekiskLq~EL~elE~eLeele 561 (1349)
+.......+.++.+.++.+++.+.....++...+
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 5555555566666666666655555554444443
No 100
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=13 Score=49.61 Aligned_cols=212 Identities=15% Similarity=0.251 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 682 ELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLK 761 (1349)
Q Consensus 682 ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~ 761 (1349)
+.......+..++..+.........+..++......+...+.++.++.-.+.+..+.++......+.++.++..++..+=
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666677777777777788777777777777777777666666666666665554331
Q ss_pred -----Hhccc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhh
Q 000693 762 -----AAGLR---------ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEA 827 (1349)
Q Consensus 762 -----~~~~~---------eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~ 827 (1349)
.-|++ -.++..++...+.|+-.++-.|+=++- .....=.+...+.++ +++..++..-....-+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~-~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVE-DLEKEIEGLKKDEEAA 833 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHH-HHHHhHHhhHHHHHHH
Confidence 11221 234556666677777777766665543 222212222222222 2222333333222221
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHH
Q 000693 828 KSFSEKLKNLEGQVKMY-EEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1349)
Q Consensus 828 ~~l~k~L~~lq~qik~~-q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l 900 (1349)
- +.+..+ .+|+.- ....+.....+...+-.+..+-..+..+.+.+..+++.+..+..+.-++...+..-
T Consensus 834 ~---k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 834 E---KIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred H---HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 1 222211 111110 22223333333344444444445555555555555555555555555554444433
No 101
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=9.2 Score=47.40 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=21.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000693 1079 KDETVEQLHASKKAIEDLTQKLTSEVQGL 1107 (1349)
Q Consensus 1079 ~~~TveELQ~~q~~~ne~ir~Lrkei~~L 1107 (1349)
+..+.-.|-.....+.++|+-|++.|+..
T Consensus 551 g~~ds~~i~~~~~~i~~qik~lq~av~~~ 579 (772)
T KOG0999|consen 551 GTADSMNIYNLIAIISDQIKHLQKAVDHT 579 (772)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567778888889998888877654
No 102
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.48 E-value=6.9 Score=45.54 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 672 YSDKVCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQ 750 (1349)
Q Consensus 672 l~~~l~~Lk~ELE~leke~relEt-~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q 750 (1349)
+...+..++.+|+.+.......+. .+..... +.+..+++.+.++-=+ +-+...+..-.+.|..|..+-.++.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei----~Kekn~~Lqk~lKLne---E~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEI----LKEKNDDLQKSLKLNE---ETLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHhhhH---HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 456677778888877776666665 3333222 1111122222111111 1222333344455566777777777
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH---HhhHhhhHHHHHHHHHhcccchhh
Q 000693 751 ERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHE---SLMRESEMKLQDALANITSRDSEA 827 (1349)
Q Consensus 751 ~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~---~~~kk~E~~L~eal~~~~~~~~E~ 827 (1349)
++++ -|+....+ ++++++.-+++-+-|..=|+ ..++++|--++- .++|.
T Consensus 77 SkLe-~EKq~ker--------------------LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr-------~rdEw 128 (305)
T PF14915_consen 77 SKLE-KEKQNKER--------------------LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQR-------ARDEW 128 (305)
T ss_pred HHHH-HhHHHHHH--------------------HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH-------HhhHH
Confidence 7776 34433332 23333333333333322221 345555554443 23333
Q ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHhhhhhhhHHHHHHHHHHHHhhhcchhh
Q 000693 828 KSFSEKLK----NLEGQVKMYEEQLAEAAGKYALLKEELDSYFI-------KVTSLESTNEELQRQVVEANNKANNSSSE 896 (1349)
Q Consensus 828 ~~l~k~L~----~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~-------~l~~~E~~i~eLe~El~eleee~~~L~se 896 (1349)
..|-.++. .+.+-...+-.++..|..++++|+.++-...- .|.+..|.+.+.+..+.+++.-..+-...
T Consensus 129 ~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~k 208 (305)
T PF14915_consen 129 VRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDK 208 (305)
T ss_pred HHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33323322 12222333445555555555555555544433 34555666666666666666555555555
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 000693 897 NELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 897 le~l~~e~~kLeski~~LEs 916 (1349)
+....+.-..++.++.++++
T Consensus 209 v~k~~~Kqes~eERL~Qlqs 228 (305)
T PF14915_consen 209 VNKYIGKQESLEERLSQLQS 228 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666555
No 103
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.36 E-value=3.2 Score=45.94 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=11.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 408 AAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 408 ~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
+.+..++..-.++-..+....++++.+..
T Consensus 47 kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~ 75 (194)
T PF15619_consen 47 KALQKYEDTEAELPQLLQRHNEEVRVLRE 75 (194)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444433
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.17 E-value=16 Score=47.82 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHh
Q 000693 994 QIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFER 1042 (1349)
Q Consensus 994 ~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~Es 1042 (1349)
.|..++..++-+...++..-..+--|-..|-.+.-.++.|=+-+=-+..
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNg 468 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNG 468 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5666666666666666666666666666666677777777666666666
No 105
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.16 E-value=6.3 Score=43.24 Aligned_cols=154 Identities=19% Similarity=0.307 Sum_probs=113.3
Q ss_pred HHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000693 455 LELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSER 534 (1349)
Q Consensus 455 l~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~er 534 (1349)
+...+..++..+.+++-.+-.+..|..-+++-+..+-+.+-.+|.-....-......-+++.-++..+.....+..-.+.
T Consensus 30 a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es 109 (205)
T KOG1003|consen 30 ALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAES 109 (205)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666666666666666666666777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 000693 535 EVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANM 608 (1349)
Q Consensus 535 ei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~ 608 (1349)
.+..+...+.-+.+.+..+...-..+..+...|...|..+...|+....+..+++-....|...++..+.+...
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 88888888888888888888888888888888888888888888888888888887777666666664444333
No 106
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.06 E-value=6.8 Score=43.04 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 000693 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQ 611 (1349)
Q Consensus 532 ~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rq 611 (1349)
.+..+..+..+++-+..++..++..+..+..++.+.......-+..++.+.++...+++..+.+.-++.+....+..
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~--- 78 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEK--- 78 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---
Confidence 34566777777777888888888888888888888887777778888888888888888888777766662111111
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 612 RSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTS 691 (1349)
Q Consensus 612 rs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~r 691 (1349)
.-.++++..-.+--++..++....|..--+..+..|+.......+.+..+...-..+....+.+...++
T Consensus 79 -----------adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 79 -----------ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred -----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112333333333333333444433333333444444444444444455555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 000693 692 SLEVALQMAND 702 (1349)
Q Consensus 692 elEt~L~~~~e 702 (1349)
.+...|..+-.
T Consensus 148 ~ltdKLkEaE~ 158 (205)
T KOG1003|consen 148 ELTDKLKEAET 158 (205)
T ss_pred HHHHHHhhhhh
Confidence 55554444333
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.05 E-value=4.2 Score=46.29 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=76.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 000693 496 EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY--KDKITQ 573 (1349)
Q Consensus 496 k~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~--q~kIs~ 573 (1349)
+....+..+........+.++.+...+..+...+.+.+-.+.++..++..+..+|......+...+.++-.. ....+.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 334445555555556666666666666666666666666666666666666666666666666655555322 234456
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHH
Q 000693 574 LELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQ 621 (1349)
Q Consensus 574 LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rqrs~eLeell~ 621 (1349)
|...+..+..++..|++++..+...+...+..+...+.++..++..+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777776666666666555555555555544443
No 108
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.96 E-value=7.7 Score=45.58 Aligned_cols=203 Identities=16% Similarity=0.194 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 000693 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI--------------TQLELILNQS 581 (1349)
Q Consensus 516 keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kI--------------s~LEsqLk~L 581 (1349)
+.|-.+...+..+...++.++......+..++-++.-+...+.-+.....+-...- ..--..+..+
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 45555666666666666666666667777777776665555544443322111000 1112445678
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 582 NTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKK 661 (1349)
Q Consensus 582 qsrireLEEele~L~EeLeE~e~r~k~~rqrs~eLeell~~~k~kLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK 661 (1349)
+.+++.|+++-..|+.+... +......+++.. ..=+.++=.++.....+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~------------------L~~et~~~EekE-------------qqLv~dcv~QL~~An~q 214 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQ------------------LKTETDTYEEKE-------------QQLVLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hhHHHhhccHHH-------------HHHHHHHHHHhhhcchh
Confidence 88888888877777665555 110001111100 00011333455666667
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000693 662 CEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1349)
Q Consensus 662 ~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~ 741 (1349)
+..+..+++.-..+..+.+.+|..+.+.+-.+...+......-.+|...+......=..|..++.+++.++.|.-+.|..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888777777777777777777777788888888777788888888888888887777766
Q ss_pred HHHHHHHH
Q 000693 742 LRNDLNMT 749 (1349)
Q Consensus 742 LR~El~l~ 749 (1349)
-+-++..+
T Consensus 295 aQEElk~l 302 (306)
T PF04849_consen 295 AQEELKTL 302 (306)
T ss_pred HHHHHHHh
Confidence 65555443
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=15 Score=46.18 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=49.2
Q ss_pred hHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 361 LEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 361 l~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
+...+..+.+..+.+...-.++..++.....|+.++-+.+.-.........-+...+..+.+.+.+.|+++.+.+.
T Consensus 240 l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 240 LKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555666666667777777777777777777777777777777777777777777777655
No 110
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.79 E-value=15 Score=45.71 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhhhhHHHhhHhhhHH
Q 000693 737 NLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVL----EQATSRNSELESLHESLMRESEMK 812 (1349)
Q Consensus 737 ~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~L----e~e~~~~~e~~~~~~~~~kk~E~~ 812 (1349)
..+.+++.+..+.-.-+..-++.+... =--+.+-.-.+.+.|+.-...| ..+-+-|---..+.++..-+++..
T Consensus 240 e~l~al~gq~ev~~~~~~~E~~~l~eq---~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~ 316 (531)
T PF15450_consen 240 ERLRALQGQQEVGLGGIQSEESKLLEQ---CRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATK 316 (531)
T ss_pred HHHHHHHhhHhhhhhhhhHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHH
Confidence 445566666665444444334544443 1112333334444444444444 344444444444556777778888
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhc
Q 000693 813 LQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANN 892 (1349)
Q Consensus 813 L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~ 892 (1349)
|++.|++++..-.-+. ......++-++++...++-.+..+-..+.+|.+++..
T Consensus 317 L~~~lea~q~agkla~---------------------------Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~a 369 (531)
T PF15450_consen 317 LQENLEAMQLAGKLAQ---------------------------QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILA 369 (531)
T ss_pred HHHHHHHHHHhhhhhH---------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777666522222 1223344444555566666666666666666665555
Q ss_pred chhh
Q 000693 893 SSSE 896 (1349)
Q Consensus 893 L~se 896 (1349)
+...
T Consensus 370 Ls~r 373 (531)
T PF15450_consen 370 LSWR 373 (531)
T ss_pred Hhhh
Confidence 5554
No 111
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.67 E-value=22 Score=47.00 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 000693 1141 ALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ- 1216 (1349)
Q Consensus 1141 nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y- 1216 (1349)
..+.+|.-.+..+..++.+ +..++..++.++......+...+.-+.....+-...-..+.+.-..-...+-+-.+.
T Consensus 649 ~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k 728 (769)
T PF05911_consen 649 LAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKK 728 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccc
Confidence 3445555555555555555 556677777777777777777666666655555554444444433221111110000
Q ss_pred -------hCCchhhHHHHHHHHHHHHHHHHHH
Q 000693 1217 -------RGADSQKDSEREAALKSSLEELGAK 1241 (1349)
Q Consensus 1217 -------~~g~~qL~~e~e~elk~le~ei~~l 1241 (1349)
.-...+| .+|+..|.++-.++.+|
T Consensus 729 ~kqe~EiaaAA~KL-AECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 729 IKQEKEIAAAAEKL-AECQETIASLGKQLKSL 759 (769)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 1123446 66766666666666554
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.63 E-value=3.5 Score=43.29 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHH
Q 000693 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 837 lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEs 916 (1349)
..+..|..+++.+-...++.+|++||+-+...+..+.......+.++..+..++..+...+..+...+..+.+....+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666666666665555555555555444444444444444444444444444
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHH
Q 000693 917 LLDSAISEKEATGQQLASHMNTVTE 941 (1349)
Q Consensus 917 eL~~~vsei~~l~eEik~le~qIe~ 941 (1349)
.|.+....+..+.....++.+-|..
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444433333333333333333333
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.39 E-value=8.1 Score=44.05 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=36.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 663 EEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA--ADEKRKLQDTSNGYNEKLAEAENLLE 740 (1349)
Q Consensus 663 k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~--e~~k~~LE~EieEl~~qLeElE~~Le 740 (1349)
......+..+...+..+..+++.+...++.++..+...+....+....+..+ ......|..++..++.++..+++.+.
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~ 113 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELA 113 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555544444444322 33444444444444444444444433
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.28 E-value=16 Score=43.79 Aligned_cols=192 Identities=18% Similarity=0.262 Sum_probs=101.6
Q ss_pred HhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcH
Q 000693 383 KTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSL 462 (1349)
Q Consensus 383 ~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~l 462 (1349)
..+..++.-+..+|.-+.+.+..++..+....+++...+.+..-++.+++.+..+|.|.-+.|-+-+-..--|.--++.|
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777777777777777778888888999999999999999995555444444444444555
Q ss_pred HHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHH
Q 000693 463 EEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDS---EREVREF 539 (1349)
Q Consensus 463 ee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~---erei~el 539 (1349)
-+....-++++..+.--.-+ +.+. +..|-...-++..+....+++-..+..+.+.. .+++...
T Consensus 157 ~~qr~ql~aq~qsl~a~~k~-------LQ~s-------~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r 222 (499)
T COG4372 157 AEQRRQLEAQAQSLQASQKQ-------LQAS-------ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR 222 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444332111111 2222 23333333344444444555555444443332 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000693 540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSEL 588 (1349)
Q Consensus 540 eekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireL 588 (1349)
....+.....|......+......+..--..|..-+.+++.+......|
T Consensus 223 ~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~l 271 (499)
T COG4372 223 AAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARL 271 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333333333333333333333
No 115
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.26 E-value=23 Score=45.60 Aligned_cols=256 Identities=21% Similarity=0.263 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 645 KYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDT 724 (1349)
Q Consensus 645 K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~E 724 (1349)
...+.++..++..+...+......+..+...+..+..++.........++..+.... .+..-+.+....+.+|+.-
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~----k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK----KTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCcHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555444333221 2333344445566666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000693 725 SNGYNEKLAEAENLLELLRNDLN----MTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELES 800 (1349)
Q Consensus 725 ieEl~~qLeElE~~Le~LR~El~----l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~ 800 (1349)
+..-...+.++..+-+..|..+. .+.....+. +.+.-.+. ...+.++.....+..+-..+.+..
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~----------~~e~~~~~-~~ik~~r~~~k~~~~e~~~Kee~~- 470 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR----------ESESKQKL-QEIKELREEIKEIEEEIRQKEELY- 470 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----------chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666666666665444321 111111111 11111111 111222222223333333333322
Q ss_pred hHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHH
Q 000693 801 LHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQ 880 (1349)
Q Consensus 801 ~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe 880 (1349)
.+|...++..++. +. -..|-+.+-|..+-+.--+.|+...+..-..+...+..+.
T Consensus 471 ----------~qL~~e~e~~~k~---~~------------Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 471 ----------KQLVKELEKLPKD---VN------------RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred ----------HHHHHHHHhCCCC---CC------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444443 22 3456666666666666666777777766666666666665
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHH---hhHHHHHHHHHHHHHHHHHhhHHH
Q 000693 881 RQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL---LDSAISEKEATGQQLASHMNTVTE 941 (1349)
Q Consensus 881 ~El~eleee~~~L~sele~l~~e~~kLeski~~LEse---L~~~vsei~~l~eEik~le~qIe~ 941 (1349)
-.++.-=.-.+.+.-.....+...++.=--+..+.+. |-..|.+...+..+|++++.+|+.
T Consensus 526 gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 526 GKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDT 589 (594)
T ss_pred HHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555544444444444444444433332223322222 333444444555555555555554
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.21 E-value=25 Score=45.80 Aligned_cols=18 Identities=6% Similarity=0.409 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 000693 960 VKEAEIQLHEAIQRFTQR 977 (1349)
Q Consensus 960 ~~e~~~~l~e~~~~~~~~ 977 (1349)
...++..+++.+..+..+
T Consensus 504 ~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344556666666666555
No 117
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.17 E-value=26 Score=45.85 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhccch----
Q 000693 704 ERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEK------------DLKAAGLRE---- 767 (1349)
Q Consensus 704 ~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~------------~l~~~~~~e---- 767 (1349)
+..|..++..++..+..|-..+.+.+.+|.-..+.++.....+..+...+..+-+ .....|-.+
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ 346 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDY 346 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccch
Confidence 3355555666666666666666666666655555555444444333333333222 011111000
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHH
Q 000693 768 --------TDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKN 836 (1349)
Q Consensus 768 --------ee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~e---al~~~~~~~~E~~~l~k~L~~ 836 (1349)
+-++.|.+.+..++..+..+|...+..-..+..-|.-.+..++..++. .+....+.-.+.+ +++..
T Consensus 347 ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~q---eri~~ 423 (717)
T PF09730_consen 347 YEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQ---ERISE 423 (717)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHH
Confidence 224678888999999999999999888888886665556666665555 5555554444445 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHH
Q 000693 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE 878 (1349)
Q Consensus 837 lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~e 878 (1349)
|+..++.+..-+.++...+.+...||--|-+.|+++--.+..
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999999999988655443
No 118
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.02 E-value=12 Score=41.28 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 387 AQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 387 a~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
+.|.+|+.--..+..+..++-..+.-++..=+.|...+++|...++.++.
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555554444445666666677777776654
No 119
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=27 Score=45.45 Aligned_cols=18 Identities=17% Similarity=-0.055 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000693 989 SVLEGQIKSYEEQAREAS 1006 (1349)
Q Consensus 989 ~~l~~~i~~~ee~~~~~~ 1006 (1349)
+.+.+-|+.||-+....+
T Consensus 946 ~e~~s~~~e~e~~~s~~~ 963 (970)
T KOG0946|consen 946 DEKVSIIGEQEASLSMQS 963 (970)
T ss_pred hhhhcccchhhhhhhccc
Confidence 345566677776655543
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.82 E-value=21 Score=43.68 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000693 693 LEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLN 747 (1349)
Q Consensus 693 lEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~ 747 (1349)
+.+.+.........|..-+.+-++....|+..+..-+..++++-..-..|+.++.
T Consensus 187 l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 187 LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333444444444444455555556666655555555555554444444433
No 121
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.34 E-value=15 Score=40.42 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 672 YSDKVCELASELEAFQARTSSLEVALQMAND 702 (1349)
Q Consensus 672 l~~~l~~Lk~ELE~leke~relEt~L~~~~e 702 (1349)
+......+..+...+...+-.++..+....+
T Consensus 121 lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 121 LKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 122
>PRK09039 hypothetical protein; Validated
Probab=93.28 E-value=4.2 Score=48.78 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 000693 481 LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNL 524 (1349)
Q Consensus 481 ~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~e 524 (1349)
.+|.+.+.--.+....+-..|..+...+..++..+..|+.+...
T Consensus 63 a~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 63 AELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444445555555555555555555555553
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.27 E-value=13 Score=39.28 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000693 653 EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKL 732 (1349)
Q Consensus 653 eqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qL 732 (1349)
.....++.++.++++.+.....+...+..+.+...+.+..+...+.......++|...+..+...+..|......++.++
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555566666666667777767667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 000693 733 AEAENLLELLRN 744 (1349)
Q Consensus 733 eElE~~Le~LR~ 744 (1349)
.+++.......+
T Consensus 97 ~eLE~~~~~~~~ 108 (140)
T PF10473_consen 97 SELESLNSSLEN 108 (140)
T ss_pred HHHHHHhHHHHH
Confidence 777766664444
No 124
>PRK09039 hypothetical protein; Validated
Probab=93.22 E-value=5.9 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=9.8
Q ss_pred ccchHHHHHHHHHhhHHHHHHHH
Q 000693 477 SQRNLELEDIIRASNEAAEEAKS 499 (1349)
Q Consensus 477 ~qk~~EL~~q~~~~~~~~Ek~k~ 499 (1349)
+.+...|+..|.++++.+..+..
T Consensus 73 ~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 73 RQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.21 E-value=5.8 Score=41.07 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1138 EKFALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIA 1214 (1349)
Q Consensus 1138 ~K~nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~ 1214 (1349)
++..+...|..+...+...... +..++.........|+..|..-...|......++.....+..+-..+..+...+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777666666666 8889999999999999999999999999999999988888888888888888877
Q ss_pred HhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1215 EQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQ 1260 (1349)
Q Consensus 1215 ~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~ 1260 (1349)
.........+..|...-..+..+|..++..+.+|..+-+-|=.+|.
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7743334443566777777777777777777777766665555543
No 126
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.95 E-value=21 Score=42.49 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=114.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000693 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1349)
Q Consensus 388 ~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~ 467 (1349)
-+.=+..+|+..+.++...-....-|......++.-+.++.-....- -+.. .-+.+++..|..++...-+.+.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~------~d~~-~~~~~~~~~La~lL~~sre~Nk 82 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGF------GDPS-IPPEKENKNLAQLLSESREQNK 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc------CCcc-CCcccchhhHHHHHHHHHHHHH
Confidence 34455667777777766665555555543333333222222110000 0000 1123477899999999999999
Q ss_pred hhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000693 468 ETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLS 547 (1349)
Q Consensus 468 ~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq 547 (1349)
....-+.+++||+.|+.+-+.-++.++-+.+.........-.. +....|=.|+..++.++..+++++..+.+..+++.
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~ 160 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV 160 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888777666653333322111 55555666666666666666666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 548 TALKEVEEEKKQLHDQMNDYKDK-------ITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 548 ~EL~elE~eLeele~klee~q~k-------Is~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
.+-..+......++..++-.-.. |..|=-.-..+..|+..++++.+.+...+..
T Consensus 161 ~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 161 TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333333333333222211 3333333335555555555555544444443
No 127
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.85 E-value=1.3 Score=48.90 Aligned_cols=104 Identities=25% Similarity=0.328 Sum_probs=82.6
Q ss_pred HHhHHhhhhhhhHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHH
Q 000693 312 FSSKEALITNLTQELDLIKA--SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQV 389 (1349)
Q Consensus 312 l~~ee~~~~~~r~ele~~kr--~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i 389 (1349)
|.+.+-.|.=.|+=|.-+.| +..++++...++.. |+++.++.+..+.+.+.++++.+
T Consensus 107 lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~ke---------------------kl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 107 LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKE---------------------KLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445666666665 66665555444433 89999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 390 SNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 390 ~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
.++++.|..++.+.+.++..+..+..+...++.-.++|++.+.-...
T Consensus 166 ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 99999999999999999999999999999999999998887665544
No 128
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.78 E-value=15 Score=47.07 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHH
Q 000693 1161 KEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGA 1240 (1349)
Q Consensus 1161 ~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~ 1240 (1349)
+..+..+...+..+...+.++......-...+.-.-..+..+-.++..++.-...|...+..+ ......++.-...+..
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l-~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEV-LEYAEKIKEELDQLDD 343 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHhC
Confidence 333444444444444444444444444444443333445555555555555555554444444 3333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1241 KNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1241 le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
....+..+..++..+.+++........
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443333
No 129
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.72 E-value=51 Score=42.61 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=98.7
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhhhh----hhhHHHHHHHH
Q 000693 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK-------YALLKEELDSYFIKVTSLE----STNEELQRQVV 884 (1349)
Q Consensus 816 al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k-------~~~l~~Ele~~~~~l~~~E----~~i~eLe~El~ 884 (1349)
.|-.++.+=+=|. +++.+++|.|.---.-+.-.... ...+.+||.++++.-..+- ....-++.++.
T Consensus 430 RL~sL~~RlSyAv---rrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~ 506 (739)
T PF07111_consen 430 RLPSLSNRLSYAV---RRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVG 506 (739)
T ss_pred HHHHHhHHHHHHh---cccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566666777777 89999999886433222222222 2367778877777543333 33344555555
Q ss_pred HHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHh-HhHHhhhHHH
Q 000693 885 EANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELH-SATEARVKEA 963 (1349)
Q Consensus 885 eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~-~~~~~~~~e~ 963 (1349)
.+.+ ....+...+....+.|+..+..-...+.........+...+..+..+-..+..++++-.+.. .+-..++.++
T Consensus 507 ~ArE---qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 507 RARE---QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 44455666666677777777776666666666777777777777777777777776655433 3666688888
Q ss_pred HHHHHHHHHHHh
Q 000693 964 EIQLHEAIQRFT 975 (1349)
Q Consensus 964 ~~~l~e~~~~~~ 975 (1349)
++.+.+.|-...
T Consensus 584 Esrl~E~L~~~E 595 (739)
T PF07111_consen 584 ESRLREQLSEME 595 (739)
T ss_pred HHHHHHHHHHHH
Confidence 888877776643
No 130
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.28 E-value=32 Score=40.89 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=114.0
Q ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHhHhHh--------HHhhhHHHHHHHHHHHHH
Q 000693 905 NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSR---ALELHSA--------TEARVKEAEIQLHEAIQR 973 (1349)
Q Consensus 905 ~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~---~~~~~~~--------~~~~~~e~~~~l~e~~~~ 973 (1349)
++|.++.+.+-- |+.....+..=.++++-...++..--..+.+ ++....+ ..+.+...-..|.++=+.
T Consensus 2 rKL~SK~eAL~I-L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~ 80 (319)
T PF09789_consen 2 RKLQSKSEALLI-LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQ 80 (319)
T ss_pred chhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHH
Confidence 445555555554 5555544444444444444444443344422 1111111 111222222233333333
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHh
Q 000693 974 FTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLK 1053 (1349)
Q Consensus 974 ~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~r 1053 (1349)
-..=..|+.+|..+|..++|.|+.|-+++......-...-+-- ....-+.+-..++.+......++..++...+..--
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~--~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH--FPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446999999999999999999987765433221111100 00222233444455555555556667777778888
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 1054 LTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQL 1115 (1349)
Q Consensus 1054 L~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~ 1115 (1349)
+..|-..|..++.+|+.+|+...+|....+=||- ++=..-|-|+..+..+++++.-..
T Consensus 159 l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDID----aLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 159 LVTERDAYKCKAHRLNHELNYILNGDENRIVDID----ALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999666777666544443 334445667777777777755444
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.06 E-value=35 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 000693 566 DYKDKITQLELILNQSNTRSSEL 588 (1349)
Q Consensus 566 e~q~kIs~LEsqLk~LqsrireL 588 (1349)
..+..+..+...++.++..|..+
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 132
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=52 Score=41.23 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=96.8
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPR-FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVE 554 (1349)
Q Consensus 476 ~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~-~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE 554 (1349)
+.|+..||+...|..+.-++..+..+-...+. +...+.....=+.-+++.-.|-..+.+.|.++...+-+++.++..+.
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556888888888888888888876655443 45555666666777888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 555 EEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 555 ~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
.++..+.....++...-..++.+.-.+...++...-.-..+.....+
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE 174 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE 174 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887777777777777777666666655555555
No 133
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.57 E-value=84 Score=43.05 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 778 EEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYA 856 (1349)
Q Consensus 778 ~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~-~l~k~L~~lq~qik~~q~~~~ea~~k~~ 856 (1349)
+.++-.++..|.+++.-|.-+. .+.-+++..+.- |.+-...--+.- .|-...+.+...+..+|.+++..-.+..
T Consensus 699 e~~~~e~~~~lseek~ar~k~e----~~~~~i~~e~e~-L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAE----NLLLEIEAELEY-LSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHH----HHHHHHHHHHHH-HhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777888888887777777 444455544422 222111111111 0112222333344556666666666667
Q ss_pred hHHHHHHHHHHHHhhh
Q 000693 857 LLKEELDSYFIKVTSL 872 (1349)
Q Consensus 857 ~l~~Ele~~~~~l~~~ 872 (1349)
++..||- ++...-..
T Consensus 774 ~~~~eLs-sq~~~~~t 788 (1317)
T KOG0612|consen 774 SLQRELK-SQEQEVNT 788 (1317)
T ss_pred hhHHHhh-hHHHhhcc
Confidence 7777777 66655444
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.51 E-value=2.3 Score=46.74 Aligned_cols=112 Identities=29% Similarity=0.343 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1349)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~ 569 (1349)
+.+.+-+....|.++...+..+-++...+...+..+..++....+.+..+...+..++..+..+...+.+....+..++.
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455677777777777777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
.+..|..+...+..+++.|+.+-..|-++.-.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877766555443
No 135
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.29 E-value=92 Score=43.05 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000693 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELES 800 (1349)
Q Consensus 756 iE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~ 800 (1349)
+...|...|+.+........-....+..+...+.........+..
T Consensus 754 ~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 754 FDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677765554444434444555555666666555555553
No 136
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.97 E-value=42 Score=38.67 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000693 1225 SEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1266 (1349)
Q Consensus 1225 ~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~ 1266 (1349)
..+...+..+......+..........|+.=+.-|.+++...
T Consensus 216 ~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 216 RANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666555543
No 137
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.83 E-value=51 Score=38.03 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 715 ADEKRKLQDTSNGYNEKLAEAENLLE 740 (1349)
Q Consensus 715 e~~k~~LE~EieEl~~qLeElE~~Le 740 (1349)
...+..+..........|.+.++.|.
T Consensus 226 ~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 226 EKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 138
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.58 E-value=45 Score=37.17 Aligned_cols=140 Identities=20% Similarity=0.263 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000693 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---ERELTESLNAAADEKRKLQDTSN 726 (1349)
Q Consensus 650 ELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek---~reL~eqlee~e~~k~~LE~Eie 726 (1349)
.+...+..+.++.....+.+......-.++...|..+..++..+...+...... +..+...+..+++.+..|.-+.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555544333222 22344444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000693 727 GYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA-AGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNS 796 (1349)
Q Consensus 727 El~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~-~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~ 796 (1349)
-+...+..++..-+.|...++ ..=.+++- .|++.--++.|+..+..+++..++.|....+..+
T Consensus 111 vL~qr~~kle~ErdeL~~kf~-------~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFE-------SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555555555555554444443 22222222 2344555677788888888887777776644433
No 139
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.70 E-value=91 Score=39.61 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 1060 LYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQL 1115 (1349)
Q Consensus 1060 ~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~ 1115 (1349)
.-+++++.|-..+++.. +..+-.|+..-.+.+++.+-.-+..+..|..+|-...
T Consensus 366 ~ke~E~q~lr~~l~~~~--~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~ 419 (511)
T PF09787_consen 366 EKESEIQKLRNQLSARA--SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALR 419 (511)
T ss_pred HHHHHHHHHHHHHHHHh--ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 33455555555554211 3334456666666666666655555555555544443
No 140
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.44 E-value=45 Score=41.75 Aligned_cols=19 Identities=11% Similarity=0.426 Sum_probs=7.8
Q ss_pred HHHHHhHHHHHhhhhHhhh
Q 000693 257 EGQMASLQEELKGLNEKIS 275 (1349)
Q Consensus 257 e~~~~~l~ee~~~~~e~~~ 275 (1349)
+.++..++.++...+..+.
T Consensus 167 ~~ql~~~~~~L~~ae~~l~ 185 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLK 185 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 141
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.08 E-value=1.2e+02 Score=40.36 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000693 1129 IESLKAQAAEKFALETRIKELEELLVNVETQF---KEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRE 1205 (1349)
Q Consensus 1129 I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l---~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~q 1205 (1349)
-.-+++.+.++.+|.-.+++.++.|.++...+ -+++-.++..++.|+..|+.......+.....+..++.+.-
T Consensus 940 A~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a---- 1015 (1243)
T KOG0971|consen 940 AAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQA---- 1015 (1243)
T ss_pred HHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHH----
Confidence 45677888888899999999999988888883 34666677777777777777666666655555443333221
Q ss_pred HHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1206 LQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQ 1261 (1349)
Q Consensus 1206 l~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~d 1261 (1349)
-..++=+.+...|+.+..+|+.++.+-.+++++++.
T Consensus 1016 --------------------~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1016 --------------------LLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 133444566777888889999999999999999875
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.08 E-value=92 Score=39.03 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q 000693 517 ELEQQLNLVELKSSDSEREVREF 539 (1349)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~el 539 (1349)
-++.++..++.++.+.+..+..|
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 143
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.63 E-value=64 Score=36.72 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 000693 509 IAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY---------KDKITQLELILN 579 (1349)
Q Consensus 509 ~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~---------q~kIs~LEsqLk 579 (1349)
..++.++.....++..++..+......+..+......+...+......+.+....+... ......|+..+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~ 160 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELA 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444455555555555544444444444444432 333444444444
Q ss_pred HHhHHHHHHHHHHH
Q 000693 580 QSNTRSSELEEELR 593 (1349)
Q Consensus 580 ~LqsrireLEEele 593 (1349)
.+..++..++-.+.
T Consensus 161 ~l~~~~~~le~el~ 174 (240)
T PF12795_consen 161 ALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445554444443
No 144
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.55 E-value=1.5e+02 Score=41.01 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHH
Q 000693 861 ELDSYFIKVTSLESTNEELQR 881 (1349)
Q Consensus 861 Ele~~~~~l~~~E~~i~eLe~ 881 (1349)
++..+...+...+..+..+..
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.49 E-value=60 Score=36.25 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 963 AEIQLHEAIQRFTQRDIE-ANNLNEKVSVLEGQIKSYEEQAREAST 1007 (1349)
Q Consensus 963 ~~~~l~e~~~~~~~~~~~-~~~l~~~~~~l~~~i~~~ee~~~~~~~ 1007 (1349)
+...++.+|+.+-++-.- +--|..||.+|...+..-+-|+.+.-+
T Consensus 126 L~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 126 LYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444211 233455666666666666666655433
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.21 E-value=45 Score=34.58 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000693 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1349)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1349)
+....+.+..+.+.+..+..-+++...+..-|+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667677777777777777766666555
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.10 E-value=98 Score=38.36 Aligned_cols=148 Identities=14% Similarity=0.233 Sum_probs=112.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 664 EAEAGSKQYSDKVCELASELEAFQ---ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1349)
Q Consensus 664 ~~eqeL~el~~~l~~Lk~ELE~le---ke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le 740 (1349)
.|.+....+-.++..++...+.+- .++..+...++.++.+.+.|++..+.+......+.....++-..++.+...+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie 340 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE 340 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344444444555556666555544 45666667888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHH---HHHHHHHHHHHHHHHHHHHhh----hhhhhhhhHHHhhHhhhHHH
Q 000693 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVME---KLKSAEEQLEQQTRVLEQATS----RNSELESLHESLMRESEMKL 813 (1349)
Q Consensus 741 ~LR~El~l~q~k~esiE~~l~~~~~~eee~~~---k~k~~~~~l~~~~~~Le~e~~----~~~e~~~~~~~~~kk~E~~L 813 (1349)
..-.++..++...+.+...+...|+.-++|+. -|-.+-+.|+-+.-..+..++ +..+++ ..-+.+|-.+
T Consensus 341 ~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq----~~~~slek~~ 416 (622)
T COG5185 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ----GIFKSLEKTL 416 (622)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH----HHHHHHHHHH
Confidence 88899999999999999999999999998863 356667777777766666654 445555 5666666555
Q ss_pred HH
Q 000693 814 QD 815 (1349)
Q Consensus 814 ~e 815 (1349)
+.
T Consensus 417 ~~ 418 (622)
T COG5185 417 RQ 418 (622)
T ss_pred HH
Confidence 55
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.81 E-value=86 Score=37.44 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 555 EEKKQLHDQMNDYKDKITQLELILN 579 (1349)
Q Consensus 555 ~eLeele~klee~q~kIs~LEsqLk 579 (1349)
.-+.++...|.+-+..+.+++...-
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555544
No 149
>PRK11281 hypothetical protein; Provisional
Probab=85.77 E-value=1.7e+02 Score=40.76 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=94.8
Q ss_pred HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHHHhHHhhhhhhhHHHHHHhhhhhh--------HHHHHHHHHHHHHHHH
Q 000693 280 VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQ--------AKEEISALDNLLADAK 351 (1349)
Q Consensus 280 ~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~rl~~ee~~~~~~r~ele~~kr~~~~--------~~e~~~~l~~~~~~~~ 351 (1349)
+|.++.++.++|+..+..+.-.-+++..+.++.++....+.+.++.+......+.. .......|+....-++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 88888899999988888877777888889998888888888888887777763322 2345666777778888
Q ss_pred HHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHH
Q 000693 352 ENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1349)
Q Consensus 352 ~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~ 398 (1349)
.+...-..+|.+...+.+=-..++.-+..++..++.++..|++-+..
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888886655
No 150
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.23 E-value=1.2e+02 Score=38.57 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHH
Q 000693 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELE 1017 (1349)
Q Consensus 968 ~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e 1017 (1349)
.+.+.++...+.+...|.+++.++..-| .|-.+..+....-+..+...+
T Consensus 183 ~~fl~rtl~~e~~~~~L~~~~~A~~~~~-~~l~~~~e~~~~l~l~~~~~~ 231 (511)
T PF09787_consen 183 VEFLKRTLKKEIERQELEERPKALRHYI-EYLRESGELQEQLELLKAEGE 231 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 4456666667777788888888665433 343344444444444444444
No 151
>PRK10869 recombination and repair protein; Provisional
Probab=85.12 E-value=1.3e+02 Score=38.77 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELG 1239 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~ 1239 (1349)
++..+..+...+..+...+.++......-...+.-.-..+..+..++..++.-..-|...+..+ ..+...++.-...+.
T Consensus 259 ~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~-~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 259 MDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEEL-PQHHQQLLEEQQQLD 337 (553)
T ss_pred hCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhh
Confidence 4444445555555555555555555554444444444456666666666666666675555555 555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1240 AKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1240 ~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
+....+..+..++..+.+++...-....
T Consensus 338 ~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 338 DQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665554444
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.81 E-value=1.5e+02 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000693 507 RFIAAEQRSVELEQQLNLVELKSSDSEREVREFSE 541 (1349)
Q Consensus 507 ~~~~~e~k~keLE~Ql~elq~K~~e~erei~elee 541 (1349)
..........-|..|+..+..++.++++.+..|..
T Consensus 188 k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 188 KSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555666666666666555555544
No 153
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.79 E-value=98 Score=37.24 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHh-hCCchhhHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEV--KDRNALYEQVIQLQRELQIAQTA---IAEQ-RGADSQKDSEREAALKS 1233 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e--~~~q~~~~~l~~~~~ql~~l~~a---I~~y-~~g~~qL~~e~e~elk~ 1233 (1349)
++.++..++..+..++..|..++.++..-- .........+..+..++..+... +..| ..+.|.+ ..+...+..
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v-~~l~~~i~~ 253 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV-PSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch-HHHHHHHHH
Confidence 777788888888888888888777663311 11112333344444444444444 3344 5557888 888888888
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhh
Q 000693 1234 SLEELGAKNKEA--------ALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1234 le~ei~~le~ei--------~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
+..+|......+ .....+...|...+.-+...|.
T Consensus 254 l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776655 3334555566666666666664
No 154
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.74 E-value=68 Score=41.52 Aligned_cols=129 Identities=24% Similarity=0.255 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000693 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLA 849 (1349)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ 849 (1349)
+++|..+++++++-.+..|-...+ -.-|. .+|+.|+.-++.++..+..--.--+.++++..++..+-.+++
T Consensus 110 ~eekn~slqerLelaE~~l~qs~r-ae~lp--------eveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLR-AETLP--------EVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHh-hhhhh--------hhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887777766555 22222 678888887777777666555556899999999999988888
Q ss_pred HHHHHH------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 000693 850 EAAGKY------------------ALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQL 907 (1349)
Q Consensus 850 ea~~k~------------------~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kL 907 (1349)
.|+.+. .....|..+.+++...++.....+.+.+..+.-....+....+.+...+..|
T Consensus 181 rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 181 RARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888433 3344444444444444444444444444444433333333333333333333
No 155
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.50 E-value=77 Score=41.99 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=53.8
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hhCCchhhHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAH--EVKDRNALYEQVIQLQRELQIAQ---TAIAE-QRGADSQKDSEREAALKS 1233 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~--~e~~~q~~~~~l~~~~~ql~~l~---~aI~~-y~~g~~qL~~e~e~elk~ 1233 (1349)
++..+..++.+...++..+..++.++.. -..+.+..++.+..+-.++..+. ..+.. |..+.|.+ ..+...+..
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v-~~l~~~~~~ 350 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTY-RALLEKRQT 350 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchH-HHHHHHHHH
Confidence 5555555555555555555555554411 00111222333333333333333 33333 56777777 777777777
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 000693 1234 SLEELGAKNKEAAL---LQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1234 le~ei~~le~ei~~---lt~eIneLeqkL~dSd~~~~ 1267 (1349)
+..++..++..+.. .+.++..|..+..-....|.
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~ 387 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666665544 34444555555555555553
No 156
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.43 E-value=1.9e+02 Score=40.22 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.8
Q ss_pred HHhccchHHHHHHHHH
Q 000693 474 ATASQRNLELEDIIRA 489 (1349)
Q Consensus 474 ~~~~qk~~EL~~q~~~ 489 (1349)
.+++++..+..-++..
T Consensus 147 ~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 147 TEARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4455555555544433
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.71 E-value=58 Score=37.23 Aligned_cols=63 Identities=29% Similarity=0.257 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhHHhhhhhhhHHHHHHhh----hhhhHHHHHHHHHHHHHHHHH---HHHHhHhhhHHHH
Q 000693 303 LQLLDLEQRFSSKEALITNLTQELDLIKA----SESQAKEEISALDNLLADAKE---NLHAKVSELEDIK 365 (1349)
Q Consensus 303 s~~~dlE~rl~~ee~~~~~~r~ele~~kr----~~~~~~e~~~~l~~~~~~~~~---~l~~k~~el~~~~ 365 (1349)
+||+++|+|....+..|.-++.+++..|. .-.+.-.++.-|+..++.+++ +|.+..-+|.+++
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999887 344445566666665555543 4444444444443
No 158
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.53 E-value=32 Score=35.44 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=42.4
Q ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000693 1076 IVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEET 1124 (1349)
Q Consensus 1076 s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ 1124 (1349)
.+.+++.|+-+++.++.+...+..++.++..|+.+|+....+|-.|...
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999999999886665443
No 159
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.36 E-value=1.3e+02 Score=37.34 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=82.4
Q ss_pred hhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000693 468 ETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAE---QRSVELEQQLNLVELKSSDSEREVREFSEKLS 544 (1349)
Q Consensus 468 ~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e---~k~keLE~Ql~elq~K~~e~erei~eleekis 544 (1349)
.-...+...+++..+|..|.+..+..+..-|.+|+.........- .++.+++.-+..+ ..++.....-..
T Consensus 297 KL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~-------~eei~~~eel~~ 369 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAV-------DEEIESNEELAE 369 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHH
Confidence 334566777777888999999888888777777666554433322 3334444333332 223333333344
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 545 QLSTALKEVEE--EKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 545 kLq~EL~elE~--eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
+|.+++..+-. ....+...|-++.+-|......+......-++|.-+.+.+.+.+..
T Consensus 370 ~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 370 KLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444333 2456778888888888888888888888888888888888887776
No 160
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.93 E-value=1.2e+02 Score=36.73 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 000693 568 KDKITQLELILNQSNTRSSELEEEL 592 (1349)
Q Consensus 568 q~kIs~LEsqLk~LqsrireLEEel 592 (1349)
...+..++.++..+..++..+...+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l 167 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQL 167 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 161
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.91 E-value=1.4e+02 Score=37.69 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhH
Q 000693 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND----YKDKITQLELILNQSNT 583 (1349)
Q Consensus 508 ~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee----~q~kIs~LEsqLk~Lqs 583 (1349)
|..+...+-..++++......+..+-+.++++-..-.+...++...-..+..+...+.. |-.....++.++..+..
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 44445555666666666666666666777777666666666666555555555554443 33444555666666655
Q ss_pred HHHHHHH
Q 000693 584 RSSELEE 590 (1349)
Q Consensus 584 rireLEE 590 (1349)
.+.+...
T Consensus 179 ~l~qf~~ 185 (570)
T COG4477 179 ELSQFVE 185 (570)
T ss_pred HHHHHHH
Confidence 5555544
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.77 E-value=8.6 Score=42.35 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000693 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1349)
Q Consensus 511 ~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEE 590 (1349)
...++..+...+.++...+++....+..+...+..+...+......+..+...+..+...+..+...+.....-+..+.+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhHHHHhhhhh
Q 000693 591 ELRITKERSAEDEDRANMSH 610 (1349)
Q Consensus 591 ele~L~EeLeE~e~r~k~~r 610 (1349)
++..+.-++.-.+.+...+.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444333
No 163
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.70 E-value=1e+02 Score=35.81 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH----
Q 000693 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQL---- 781 (1349)
Q Consensus 706 eL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l---- 781 (1349)
.+.....+++.-..+.+..+..+..++..+.+.+...+.+++.+--..+ .|==+.+. ++-++.++|
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~v---------qIa~L~rqlq~lk 133 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAV---------QIANLVRQLQQLK 133 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH---------HHHHHHHHHHHHH
Confidence 3444555556666667777777777777777777777777776665555 33222221 223333333
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000693 782 EQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEE 861 (1349)
Q Consensus 782 ~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~E 861 (1349)
.+++.+|++... ...-...+|+.+++..-...+..-++-. +..|+.-+-.-...+..|..+
T Consensus 134 ~~qqdEldel~e-------~~~~el~~l~~~~q~k~~~il~~~~~k~------------~~~~~~~l~~~~~~N~~m~ke 194 (258)
T PF15397_consen 134 DSQQDELDELNE-------MRQMELASLSRKIQEKKEEILSSAAEKT------------QSPMQPALLQRTLENQVMQKE 194 (258)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhchHHHHHHHHHHHHHHHH
Confidence 333444444421 1122233555555554333333332222 344444444444667899999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee~~ 891 (1349)
+..++..+..++-.||.|..++..+.....
T Consensus 195 i~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998876654
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.22 E-value=64 Score=39.20 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=88.7
Q ss_pred HHHHHHHHHhHHHHHHHhh--hhhcccc--cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1055 TEDLALYETKLSDLQAKLS--ATIVEKD--ETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIE 1130 (1349)
Q Consensus 1055 ~~EI~~le~qi~dL~~eLs--~~s~g~~--~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ik~~I~ 1130 (1349)
.-+...-..++.++.-+|- +..+++. .-++..+.....|...+-..+..+.+|..+.......|.+-|.-
T Consensus 190 ~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~------ 263 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY------ 263 (359)
T ss_pred cCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3334444555666555552 0111111 23555555555565555555555555555544444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1131 SLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQ 1210 (1349)
Q Consensus 1131 ~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~ 1210 (1349)
+...++.+-.+...+++.|..++..+...-......-..|+++-.+|....
T Consensus 264 -----------------------------iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 264 -----------------------------INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred -----------------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566666666666666666666666777777777777
Q ss_pred HHHHHh---hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1211 TAIAEQ---RGADSQKDSEREAALKSSLEELGAKNKEAALLQN 1250 (1349)
Q Consensus 1211 ~aI~~y---~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~ 1250 (1349)
..|..- ..+.+-| -....+|..+..+|..+.-.|..++.
T Consensus 315 ~emeerg~~mtD~sPl-v~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 315 QEMEERGSSMTDGSPL-VKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHhcCCCCCCCHH-HHHHHHHHHHHHHHHHhhhhhheehh
Confidence 777776 2333445 45677777777777777666665543
No 165
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.49 E-value=53 Score=39.09 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000693 482 ELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDS 532 (1349)
Q Consensus 482 EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~ 532 (1349)
.|...++.+++-.......+.-+...+-....+...|...+..++.-.+++
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444444455555555555555555555555554444443
No 166
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.44 E-value=54 Score=37.70 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcc
Q 000693 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNS 893 (1349)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L 893 (1349)
|-.+|..++.+++..+..+.+...++..|..++-.....-.-++.....++.....|.......
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3388888888888888888888888888777777766666666666655555555555433333
No 167
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.41 E-value=1.4e+02 Score=36.67 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHc
Q 000693 1330 FIIGVALVSVIIGITL 1345 (1349)
Q Consensus 1330 ~~~~~~~~~~~~~~~~ 1345 (1349)
++++.+++++++||.+
T Consensus 399 ~l~~~~~~Gl~lg~~~ 414 (444)
T TIGR03017 399 NLVLSIFLGMLLGIGF 414 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555543
No 168
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.39 E-value=85 Score=34.02 Aligned_cols=165 Identities=22% Similarity=0.207 Sum_probs=102.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhH
Q 000693 976 QRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAET-RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKL 1054 (1349)
Q Consensus 976 ~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~-~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL 1054 (1349)
.++.++..+.-++..|..++...+.|+..--...+. |-+.|+.... ....+..+++.=..+|.++=..+.+.
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLki-------en~~l~~kIeERn~eL~~Lk~~~~~~ 75 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKI-------ENQQLNEKIEERNKELLKLKKKIGKT 75 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999998876665555 4478885444 44444444444444444444445555
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHH-
Q 000693 1055 TEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF----KSEI- 1129 (1349)
Q Consensus 1055 ~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i----k~~I- 1129 (1349)
..-+..+...+..+..+.. .+...+......+..++..+..+..++......+..|-... .-.|
T Consensus 76 v~~L~h~keKl~~~~~~~~-----------~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 76 VQILTHVKEKLHFLSEELE-----------RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 5555555555555444443 34555556677777777777777777777777766664443 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1130 ESLKAQAAEKFALETRIKELEELLVNVET 1158 (1349)
Q Consensus 1130 ~~le~~L~~K~nLe~~Iee~e~~i~~le~ 1158 (1349)
.-.....+....++..|..++..+..++.
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555556666666666666666555544
No 169
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.59 E-value=1.3e+02 Score=35.72 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 699 MANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESI 756 (1349)
Q Consensus 699 ~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esi 756 (1349)
..+..+-.|..++-+++...+.+-.+.+++...|...-..-..|..++.-++.+-...
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566666666666666667777777666666555555666655555554433
No 170
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.57 E-value=1.1e+02 Score=34.59 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 723 DTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1349)
Q Consensus 723 ~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1349)
..+.++..--......+-+|++.+...++++.+++..|..+
T Consensus 147 ~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 147 KANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555566776666666666665544444
No 171
>PRK11519 tyrosine kinase; Provisional
Probab=79.68 E-value=1.1e+02 Score=40.52 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=30.6
Q ss_pred hhCCchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 000693 1216 QRGADSQKDSEREAALKSSLEELGAKNKEAAL---LQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1216 y~~g~~qL~~e~e~elk~le~ei~~le~ei~~---lt~eIneLeqkL~dSd~~~~ 1267 (1349)
|....|.+ ....+.+..+..++..++..+.. .+.++..|+.+..-....|.
T Consensus 334 y~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~ 387 (719)
T PRK11519 334 YTKEHPAY-RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYM 387 (719)
T ss_pred hcccCcHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677 66666666666666666665554 34445555555555555553
No 172
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.80 E-value=51 Score=33.96 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccch
Q 000693 454 ELELKLKSLEEQHNETGAAAATASQRN 480 (1349)
Q Consensus 454 El~~~~k~lee~~~~~e~~~~~~~qk~ 480 (1349)
++..+...+.+....|.+...++-.|.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 455555666666666666666666665
No 173
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.61 E-value=1.8e+02 Score=36.66 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSE----NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMN 937 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee~~~L~se----le~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~ 937 (1349)
++.++.+|..++..+..+..+..-+..+...-... +....+..+.+...+.-++.+|.....+..++.+++.++.+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777666553333222 22445666677777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 000693 938 TVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEE 1000 (1349)
Q Consensus 938 qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee 1000 (1349)
+|-++....-- + ---+.+.-.-|+.+.++.-+-..|.+++..|+..+..-...-++
T Consensus 241 ql~d~qkk~k~-~------~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 241 QLVDLQKKIKY-L------RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHhhHHHHHH-H------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776555411 0 01233444556666666666666666666655555444433333
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.54 E-value=2.9e+02 Score=38.50 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000693 1110 QLEAQLNEKKATEETF 1125 (1349)
Q Consensus 1110 eke~k~~eis~LE~~i 1125 (1349)
=.+++.....+|+..+
T Consensus 692 Y~yTa~~L~~~l~~S~ 707 (1109)
T PRK10929 692 YLATAQALLARLETSV 707 (1109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665554
No 175
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.50 E-value=64 Score=42.68 Aligned_cols=104 Identities=22% Similarity=0.260 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000693 106 LERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAE 185 (1349)
Q Consensus 106 ~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~e~e~~~~L~~ 185 (1349)
+..+.....+|=.++..+.++...+.+..+++..+++++..+|..|.+++...=...+...- .--.+|.++.++|..
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P---~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLP---VLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHH
Confidence 33344445556667777777777777777777777777777777777732221111110000 001134488888988
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000693 186 VKEAFDGLSLEIEQSRSRLQELEHKLQ 212 (1349)
Q Consensus 186 ~ke~lee~~~~l~~~kkk~q~~~~~L~ 212 (1349)
.+..+..+...+++-++++.-....+.
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888898999999999888877655443
No 176
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.46 E-value=1.5e+02 Score=35.21 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHH
Q 000693 926 EATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHE 969 (1349)
Q Consensus 926 ~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e 969 (1349)
..+...|..+...|..|..++..+.--+++........+..+++
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ire 268 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIRE 268 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777754443334333333333333333
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.33 E-value=45 Score=38.59 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=56.9
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000693 476 ASQRNLELEDIIRASNEAAEEAKSQ----LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1349)
Q Consensus 476 ~~qk~~EL~~q~~~~~~~~Ek~k~~----l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~ 551 (1349)
+-||+.||+.|+|-++ |.+++ |+.|++.+.-.+.+...-......++-....+--....+.....++.-++.
T Consensus 16 aLqKIqelE~QldkLk----KE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLK----KERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 4578888888887533 34444 777777766665555555555555555555555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 552 EVEEEKKQLHDQMNDYKDKITQLE 575 (1349)
Q Consensus 552 elE~eLeele~klee~q~kIs~LE 575 (1349)
-++..++-+.++++.....|..|+
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555554333333
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=77.02 E-value=1.6e+02 Score=34.75 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENL 738 (1349)
Q Consensus 706 eL~eqlee~e~~k~~LE~EieEl~~qLeElE~~ 738 (1349)
..+...+.++..+..++.++-=++.||+.+-..
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444333
No 179
>PRK10698 phage shock protein PspA; Provisional
Probab=75.88 E-value=1.5e+02 Score=33.69 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHH
Q 000693 1130 ESLKAQAAEKFALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRN 1193 (1349)
Q Consensus 1130 ~~le~~L~~K~nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q 1193 (1349)
+-+..-|.+|......+..++..+..+... +...+..|+..+..++.+.+....++.......+
T Consensus 85 dLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 85 DLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999999988888 8999999999999999999998888777665433
No 180
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.83 E-value=1.7e+02 Score=37.14 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=76.3
Q ss_pred cchhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHH
Q 000693 823 RDSEAKSFSEKL--KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1349)
Q Consensus 823 ~~~E~~~l~k~L--~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l 900 (1349)
.+.++. ++| .-+...|.++-.++.-+--|+..+.+|-..+...|..++..+..+..++..+...+..+..+ +
T Consensus 405 ~E~esR---E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L 478 (518)
T PF10212_consen 405 PEEESR---EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---L 478 (518)
T ss_pred CchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344555 443 45788899999999999999999999999999999999998888888888877766555544 4
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Q 000693 901 VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTEL 942 (1349)
Q Consensus 901 ~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~L 942 (1349)
..+.+.++.-++.+-+.| ..+++++.+-.-+|+.|
T Consensus 479 ~TTr~NYE~QLs~MSEHL-------asmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 479 ETTRRNYEEQLSMMSEHL-------ASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 456677777776666643 34444444444444444
No 181
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.80 E-value=1.2e+02 Score=37.43 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1076 IVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF----KSEIESLKAQAAEKFALETRIKELEE 1151 (1349)
Q Consensus 1076 s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i----k~~I~~le~~L~~K~nLe~~Iee~e~ 1151 (1349)
.+.-..+|-+|+..+..++.++..|+.++.++....-...+ .....| -..---+++.++++.....++...-.
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k---~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~ 304 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALK---EGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLS 304 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999888777443332 222222 22233456677777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHH
Q 000693 1152 LLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAA 1230 (1349)
Q Consensus 1152 ~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~e 1230 (1349)
+|......... + .....-.+.++.+... -..-.+...-++.|.+++++-...+.+|..| -++...=++..+++
T Consensus 305 ~Id~s~~nkvv-l----~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkE 378 (439)
T KOG2911|consen 305 QIDNSQTNKVV-L----QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKE 378 (439)
T ss_pred HHHhhcccHHH-H----HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHH
Confidence 77766666000 0 0112224556666665 4555667778899999999999999999999 55444443445555
Q ss_pred HHHH
Q 000693 1231 LKSS 1234 (1349)
Q Consensus 1231 lk~l 1234 (1349)
+..+
T Consensus 379 L~~L 382 (439)
T KOG2911|consen 379 LEDL 382 (439)
T ss_pred HHHH
Confidence 5444
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.79 E-value=1.8e+02 Score=34.72 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000693 653 EQISKLEKKCEEAEAGSKQYSDKVCEL----ASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGY 728 (1349)
Q Consensus 653 eqis~LEKK~k~~eqeL~el~~~l~~L----k~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl 728 (1349)
..+-.+..++..+..++..++.....+ ..++..+...+......+...+....++..++..+...+......+.++
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333332 2234444445555555555555555555555555555555555666666
Q ss_pred HHHHHHHHHHHH
Q 000693 729 NEKLAEAENLLE 740 (1349)
Q Consensus 729 ~~qLeElE~~Le 740 (1349)
..++.++++.+.
T Consensus 252 ~~~I~~ae~~~~ 263 (312)
T smart00787 252 NTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.47 E-value=79 Score=39.03 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=72.4
Q ss_pred cchHHHHH-HHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 478 QRNLELED-IIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1349)
Q Consensus 478 qk~~EL~~-q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~e 556 (1349)
+.+.+++. |+++.++..+.....++++.....+.+...+-++..+..++.|+.....+.....+--..+.....-+...
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45566666 88889999998888899988888888888888888888888888887777766664444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 557 KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 557 Leele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
+..++ ..+...+......+..|++.+..|.-.++-
T Consensus 419 l~~~~----------e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 419 LKELE----------EREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 33222 222333334444455555555544444443
No 184
>PRK11281 hypothetical protein; Provisional
Probab=75.33 E-value=3.5e+02 Score=37.80 Aligned_cols=87 Identities=9% Similarity=0.068 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALL--------KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVET 903 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l--------~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e 903 (1349)
-+..+.|..|...+..+.+.+..+++. .+-...+..++..++..++-.+.++.......+-...+.+-+...
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~ 235 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAR 235 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433321 133444555666666666666666666655555555666666666
Q ss_pred HHHHHHhHHHHHHHh
Q 000693 904 NNQLKSKVAELQELL 918 (1349)
Q Consensus 904 ~~kLeski~~LEseL 918 (1349)
...++..+..+++.+
T Consensus 236 ~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 236 IQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666633
No 185
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=74.90 E-value=2.3e+02 Score=35.39 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=93.8
Q ss_pred HHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-H
Q 000693 1051 NLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHA---SKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF-K 1126 (1349)
Q Consensus 1051 i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~---~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i-k 1126 (1349)
+-+|...=..-+..|++|+-.=. + -..-|.+||- .|+-.-+-|..|+..|..|..+++...-+.+.+++.+ +
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~-y---Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn 394 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNL-Y---LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN 394 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccH-H---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence 33444444444555555544321 0 1234566664 4566778899999999999999999988877777766 2
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000693 1127 SE--IESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQR 1204 (1349)
Q Consensus 1127 ~~--I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ 1204 (1349)
+. +.++.+.|.+. ..+=+.|+-++.+..+.|--.+.+|-...+.++.-+......-+
T Consensus 395 Lqe~la~tqk~LqEs---------------------r~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk 453 (527)
T PF15066_consen 395 LQEALANTQKHLQES---------------------RNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDK 453 (527)
T ss_pred HHHHHHHHHHHHHHH---------------------HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22 44444444221 11222333334444444444445555555555555555555444
Q ss_pred HHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1205 ELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELE 1256 (1349)
Q Consensus 1205 ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLe 1256 (1349)
.|..-...|.....--..|+.....+|.-+..+-+.-+++.-.++.++-.-+
T Consensus 454 ~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 454 TLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444431111112122334555555555555555555555554443
No 186
>PRK10869 recombination and repair protein; Provisional
Probab=74.50 E-value=2.6e+02 Score=35.95 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHH
Q 000693 924 EKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVS-VLEGQIKSYEEQA 1002 (1349)
Q Consensus 924 ei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~-~l~~~i~~~ee~~ 1002 (1349)
....+...+..+...++++...+.+-++-......+..+++..|. ..+.|..|+- .++..|.++++-
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~-----------~l~~L~rKyg~~~~~~~~~~~~l- 329 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLS-----------KQISLARKHHVSPEELPQHHQQL- 329 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-----------HHHHHHHHhCCCHHHHHHHHHHH-
Confidence 344555566666666666666665544333444444444444442 2344445553 556666655532
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHH-HHHHHhHHHHHHHh
Q 000693 1003 REASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDL-ALYETKLSDLQAKL 1072 (1349)
Q Consensus 1003 ~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI-~~le~qi~dL~~eL 1072 (1349)
..-+..++..+..+..+......+...+...+..++...+.. ..+...|...-..|
T Consensus 330 --------------~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 330 --------------LEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred --------------HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222335667777778888888888887888888887777664 46666666655555
No 187
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.43 E-value=2.3e+02 Score=35.23 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHhhhc-------chhh
Q 000693 834 LKNLEGQVKMYEEQLAEAAGKY----ALLKEELDSYFIKVTSLE------STNEELQRQVVEANNKANN-------SSSE 896 (1349)
Q Consensus 834 L~~lq~qik~~q~~~~ea~~k~----~~l~~Ele~~~~~l~~~E------~~i~eLe~El~eleee~~~-------L~se 896 (1349)
|-+|+++++....++.+....+ ..+.....+++..+...| +.|.+++.++.-+..++.. |.++
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrse 374 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSE 374 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555555544444333 245555666666555544 4455556655555555543 3333
Q ss_pred HHHHHHH--HHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 897 NELLVET--NNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL 950 (1349)
Q Consensus 897 le~l~~e--~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~ 950 (1349)
++.+... ...+..+|.++..-+++--.+|..+..+-+.+..++..++..+.|+-
T Consensus 375 le~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 375 LEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred HhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3333222 22234556666666677777788888888888888888887775544
No 188
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.39 E-value=1.7e+02 Score=33.33 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH-----------HHHHhcccc-hhhhhHHHHHHHH
Q 000693 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-----------ALANITSRD-SEAKSFSEKLKNL 837 (1349)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~e-----------al~~~~~~~-~E~~~l~k~L~~l 837 (1349)
.++-.+-+..-|+.++.+|-..+...+.+. ...+.+|.++++ |...+..++ +=|..+-..-..|
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~----a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAI----ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344446666677777777777777777776 444455544444 333444443 3344455666778
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--HhhhcchhhH--HHHHHHHHHHHHhHHH
Q 000693 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEAN--NKANNSSSEN--ELLVETNNQLKSKVAE 913 (1349)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~ele--ee~~~L~sel--e~l~~e~~kLeski~~ 913 (1349)
+.+++.|+..+..+.....-|+..+..+..++..+......+........ ..++...... .+....+.+++.++..
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee 177 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEE 177 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 88888888888777777777777777777776666666665554443332 1222211111 3455566666666666
Q ss_pred HHH
Q 000693 914 LQE 916 (1349)
Q Consensus 914 LEs 916 (1349)
.+.
T Consensus 178 ~ea 180 (225)
T COG1842 178 REA 180 (225)
T ss_pred HHH
Confidence 665
No 189
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.87 E-value=2.9e+02 Score=35.61 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHH
Q 000693 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE 878 (1349)
Q Consensus 816 al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~e 878 (1349)
-||.+..- ..+...++.+....+.+..++.........+..+++.+.-.+..++..-|.
T Consensus 149 lLD~~~~~----~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 149 LLDTFAGA----NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 46666552 234466666677777777777777666666666777666666666666654
No 190
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.79 E-value=3.4e+02 Score=36.07 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=10.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000693 501 LRELEPRFIAAEQRSVELEQQLNLVEL 527 (1349)
Q Consensus 501 l~~l~~~~~~~e~k~keLE~Ql~elq~ 527 (1349)
..-|...+...+.+....|..+.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 191
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.71 E-value=3.5e+02 Score=36.09 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 000693 1141 ALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ- 1216 (1349)
Q Consensus 1141 nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y- 1216 (1349)
.|..++++....-..+..| +-.-+..-.|....|+.+..+..+......+.++..++++...++.. ...|...
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q---~~~i~~~~ 673 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQ---QRQIESQK 673 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccc
Confidence 3445566666666666666 33345555667777777777666666666666666555555444432 2223322
Q ss_pred --hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1217 --RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKL 1259 (1349)
Q Consensus 1217 --~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL 1259 (1349)
...+..| -...++.+..-+.....+|..+=++|+.+.+.+
T Consensus 674 ~~~~~s~~L---~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 674 SPKKKSIVL---SESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred cccCCCccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222345 455666666667777777877777777777665
No 192
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=70.42 E-value=3e+02 Score=34.89 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 726 NGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1349)
Q Consensus 726 eEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1349)
.++...+.++...++.+-.+++..-.+...+..|+-.+
T Consensus 408 ~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~k 445 (531)
T PF15450_consen 408 NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTK 445 (531)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 33444444555555555555555555555555555555
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=70.04 E-value=2.6e+02 Score=34.00 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=84.5
Q ss_pred hchHHHHHhHHHHHHHHHHhHHHHHHHh-------hhhhcccccCHHHHHH------------HHHHHHHHHHHHHHHHH
Q 000693 1045 GGLVETNLKLTEDLALYETKLSDLQAKL-------SATIVEKDETVEQLHA------------SKKAIEDLTQKLTSEVQ 1105 (1349)
Q Consensus 1045 rk~v~~i~rL~~EI~~le~qi~dL~~eL-------s~~s~g~~~TveELQ~------------~q~~~ne~ir~Lrkei~ 1105 (1349)
.++..-..-|.++|..+++|++-+-.++ .+.-+|......=+|. -|+.+.+.-|...+++.
T Consensus 287 ~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELe 366 (593)
T KOG4807|consen 287 GPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELE 366 (593)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888889998888888776655 1122333333333332 67888999999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 000693 1106 GLQTQLEAQLNEKKAT-EETF----KSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNS 1180 (1349)
Q Consensus 1106 ~Lq~eke~k~~eis~L-E~~i----k~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~ 1180 (1349)
+|..+|+....+-+.- ...| +..-.++++.|.+-.++...++-++. .+-++++.++.++......|..
T Consensus 367 kLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRr-------QyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 367 KLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRR-------QYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886654332 3333 55577788888877766666665443 3445555555555555554444
Q ss_pred H
Q 000693 1181 K 1181 (1349)
Q Consensus 1181 ~ 1181 (1349)
+
T Consensus 440 K 440 (593)
T KOG4807|consen 440 K 440 (593)
T ss_pred H
Confidence 3
No 194
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.98 E-value=2.5e+02 Score=33.65 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHh
Q 000693 985 NEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETK 1064 (1349)
Q Consensus 985 ~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~q 1064 (1349)
.++..+|...|..+.....+ ++..-+.++......|..+...+..++..+..+..++...-..|..+...+..+..+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555566555544333 556667888888888888999999888888888888888888888888888888888
Q ss_pred HHHHHHHhhhhhcccccCHHHHHHHHHHH
Q 000693 1065 LSDLQAKLSATIVEKDETVEQLHASKKAI 1093 (1349)
Q Consensus 1065 i~dL~~eLs~~s~g~~~TveELQ~~q~~~ 1093 (1349)
|.++..-+. ....-|..||-..+..+
T Consensus 260 I~e~~~~~~---~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 260 IAEAEKIRE---ECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHH---HhcCCCHHHHHHHHHHH
Confidence 888776663 11334666665544443
No 195
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.21 E-value=95 Score=31.40 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Q 000693 863 DSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEA 927 (1349)
Q Consensus 863 e~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~ 927 (1349)
.++...|+++++.+...+...+++..+...|.+.+..+.........++.+|+..+......+..
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888887777777777777777777777777777777777766666555544
No 196
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=69.20 E-value=2.5e+02 Score=33.45 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000693 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1349)
Q Consensus 650 ELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~ 729 (1349)
.+.++.+-.-.|...|...+..-..-...++.+++..++.|..++..--.-+.+..+-+..+-++...+.-....+.-++
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq 298 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQ 298 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666677888888888888888888999999999888888885445556666666666667777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 730 EKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1349)
Q Consensus 730 ~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~ 762 (1349)
.+|..++....+|+.+-+.+--++.-+++.+.+
T Consensus 299 ~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 299 KKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 888888888888888877777777766664444
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.45 E-value=1.3e+02 Score=37.37 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=10.0
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHH
Q 000693 892 NSSSENELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 892 ~L~sele~l~~e~~kLeski~~LEs 916 (1349)
+....+..+..+...++.+..++++
T Consensus 351 n~k~~~e~~~~e~~~l~~~~~~~e~ 375 (493)
T KOG0804|consen 351 NQKQYYELLITEADSLKQESSDLEA 375 (493)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3333333334444444444444443
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.27 E-value=1.6e+02 Score=30.96 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=44.8
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Q 000693 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQL 932 (1349)
Q Consensus 853 ~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEi 932 (1349)
.++..+.+++.++...+..+...+..++.++..+......+...+..+...+...+..+.-+.. ....-...+..++
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~---~~~~~~tq~~~e~ 135 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN---QLQQRKTQYEHEL 135 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444333333332 2233345667777
Q ss_pred HHHHhhHHHHHHHH
Q 000693 933 ASHMNTVTELTEQH 946 (1349)
Q Consensus 933 k~le~qIe~Ls~el 946 (1349)
++-+.+|+.|...+
T Consensus 136 rkke~E~~kLk~rL 149 (151)
T PF11559_consen 136 RKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766554
No 199
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.09 E-value=97 Score=35.42 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=39.2
Q ss_pred hHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 357 KVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 357 k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
|..+++.+..+|=.+......-..-|.+...++..|..|-...-.....|..++..|+.-+...++...+..+.+..+..
T Consensus 9 K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444555554444
Q ss_pred hhhhhhh
Q 000693 437 NFCKTDS 443 (1349)
Q Consensus 437 e~~K~e~ 443 (1349)
+|...-.
T Consensus 89 ey~~Lk~ 95 (230)
T PF10146_consen 89 EYKPLKD 95 (230)
T ss_pred HHHHHHH
Confidence 5544443
No 200
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.73 E-value=1.6e+02 Score=33.87 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000693 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1349)
Q Consensus 380 ~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~ 443 (1349)
.+.+-++..-..|......+...+..+.....+...+...|...+..+...+........+++.
T Consensus 40 ek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~ 103 (246)
T PF00769_consen 40 EKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEE 103 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444444444444444444444444455
No 201
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.02 E-value=4.4e+02 Score=34.73 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhc
Q 000693 398 KVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATAS 477 (1349)
Q Consensus 398 ~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~ 477 (1349)
+++.+.+.-+..+.-.......+..-++-.+.+|.++-. . +. ...-+++|..-...+-..+-.|+.+...++
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-a---e~----lpeveael~qr~~al~~aee~~~~~eer~~ 166 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-A---ET----LPEVEAELAQRNAALTKAEEHSGNIEERTR 166 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-h---hh----hhhhHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 333333333333444444444444455555555554433 1 11 122345666655555555555666666666
Q ss_pred cch
Q 000693 478 QRN 480 (1349)
Q Consensus 478 qk~ 480 (1349)
+..
T Consensus 167 kl~ 169 (916)
T KOG0249|consen 167 KLE 169 (916)
T ss_pred HHH
Confidence 655
No 202
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.61 E-value=73 Score=37.94 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=34.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHH
Q 000693 849 AEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 849 ~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEs 916 (1349)
++....+..++.|-..+...|..+|.....+..++..++.+...+...-.........+.-....+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555566666666666666666655555555444444444444444444444433333
No 203
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.22 E-value=3.7e+02 Score=33.58 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000693 518 LEQQLNL 524 (1349)
Q Consensus 518 LE~Ql~e 524 (1349)
+..++..
T Consensus 217 ~~~~~~~ 223 (457)
T TIGR01000 217 YQAQLKS 223 (457)
T ss_pred HHHHHHh
Confidence 3333333
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.13 E-value=1.3e+02 Score=34.52 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 000693 858 LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMN 937 (1349)
Q Consensus 858 l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~ 937 (1349)
++++|-.-...+..-+.-+.+...+...|..+......++-.....+..|+.-|.++.++.......+.++.+++..+..
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555566666667777777666666666666666677777777777777777777788888888888888
Q ss_pred hHHHHHHH
Q 000693 938 TVTELTEQ 945 (1349)
Q Consensus 938 qIe~Ls~e 945 (1349)
+|+.+..+
T Consensus 96 ~in~~R~e 103 (230)
T PF10146_consen 96 EINELRKE 103 (230)
T ss_pred HHHHHHHH
Confidence 88887766
No 205
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.10 E-value=70 Score=32.84 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=59.4
Q ss_pred hhhhHhhHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHH
Q 000693 1167 VKVSAAGKEAELNSKLEDHAHEVKDRNAL---YEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKN 1242 (1349)
Q Consensus 1167 Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~---~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le 1242 (1349)
|.|.+...-+.|....+....-...++.. ..-+..++++|..+.....=| .-||-=+.......+.++...++.++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444433 333445777888887777778 55555442334455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1243 KEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1243 ~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
..|..+.++...+.+++.+..+.+.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666666666655544
No 206
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.88 E-value=3.5e+02 Score=33.17 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhHHHHHhHHHHHHHHHH
Q 000693 375 RESVEAVLKTQEAQVSNVNEELDKVSK 401 (1349)
Q Consensus 375 ~~~l~~~I~elea~i~eLeeELe~~~~ 401 (1349)
...+..++.-++.+|.+|.+|+.....
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666666666655443
No 207
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.74 E-value=42 Score=31.21 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=37.0
Q ss_pred HhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 000693 807 RESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA 886 (1349)
Q Consensus 807 kk~E~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~el 886 (1349)
.++|.+++.|+|+++- +|-++++...+.++|..|....+....++++....++.+-..-
T Consensus 7 ekLE~KiqqAvdTI~L---------------------LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 7 EKLEAKVQQAIDTITL---------------------LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788777776544 4555555555555666665555555555666555555554444
Q ss_pred HHh
Q 000693 887 NNK 889 (1349)
Q Consensus 887 eee 889 (1349)
.+.
T Consensus 66 Qer 68 (79)
T COG3074 66 QER 68 (79)
T ss_pred HHH
Confidence 443
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.99 E-value=2.8e+02 Score=31.73 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000693 341 SALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARM 420 (1349)
Q Consensus 341 ~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el 420 (1349)
.-|+..+.++.....+-+.--..+..+.++..+. .+-.++..++..+..++..+........++...+..|+..+.++
T Consensus 55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 55 KQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444432 34555666677777777777777777777777777777766666
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhh--hhchHHHHHHHhcHHHHhhhhHHHHHHhc----cchHHHHHHHHH-----
Q 000693 421 KELCSELEEKLRNSDENFCKTDSLLSQA--LANNAELELKLKSLEEQHNETGAAAATAS----QRNLELEDIIRA----- 489 (1349)
Q Consensus 421 ~~~l~~LEeeL~~~~~e~~K~e~~ls~~--~~~~~El~~~~k~lee~~~~~e~~~~~~~----qk~~EL~~q~~~----- 489 (1349)
+....-|.-.......-.+=..+ ++-+ ++.-+.|+. +++...+-++++..+- -.+..|..++.+
T Consensus 133 ~~~~~~l~ar~~~akA~~~v~~~-~~~~s~~sa~~~fer----~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~ 207 (225)
T COG1842 133 RAKKEALKARKAAAKAQEKVNRS-LGGGSSSSAMAAFER----MEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQS 207 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhHHHHHH----HHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccc
Confidence 66655554444333331111111 1111 233344444 4555555555554444 344666666665
Q ss_pred -hhHHHHHHHHH
Q 000693 490 -SNEAAEEAKSQ 500 (1349)
Q Consensus 490 -~~~~~Ek~k~~ 500 (1349)
++..+...|..
T Consensus 208 ~v~~~La~lka~ 219 (225)
T COG1842 208 AVDSRLAALKAR 219 (225)
T ss_pred cHHHHHHHHHHh
Confidence 44455444443
No 209
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.89 E-value=60 Score=36.44 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 000693 831 SEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA 886 (1349)
Q Consensus 831 ~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~el 886 (1349)
..+|-+++.|+..++.++.+....+....+++. .+++.+...+..|+.+...+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ---QKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888877766555555443 33333333333333333333
No 210
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.37 E-value=1.8e+02 Score=35.41 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000693 935 HMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKF 1014 (1349)
Q Consensus 935 le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~ 1014 (1349)
...++..|..++++.++.-++-| .-+++||...++-+...-.+.....+++..+.+-+.. +-.
T Consensus 239 ~~~~L~kl~~~i~~~lekI~sRE---k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~--------------~t~ 301 (359)
T PF10498_consen 239 TKSQLDKLQQDISKTLEKIESRE---KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE--------------RTR 301 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------------HHH
Confidence 33444444444544444433322 4455566665555544433444444444444443333 333
Q ss_pred hHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHH
Q 000693 1015 ELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSD 1067 (1349)
Q Consensus 1015 ~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~d 1067 (1349)
++-+...+|+.....+.+..+...+.-- |-+.=.++++|..||...+-.|.=
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD~sP-lv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTDGSP-LVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHHHhhhhhhe
Confidence 4444444444555555555555555544 555667788888888887766653
No 211
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=62.23 E-value=2.5e+02 Score=30.98 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 000693 829 SFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLK 908 (1349)
Q Consensus 829 ~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLe 908 (1349)
+|.-+|...++.-.-++.+++-.++-+.+.+.|-...++.-..+++....-..++..--+++.-|..++..+...-.--+
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae 140 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAE 140 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666665555555555555555555221122222222333345555666666666666
Q ss_pred HhHHHHHHHhhHHH
Q 000693 909 SKVAELQELLDSAI 922 (1349)
Q Consensus 909 ski~~LEseL~~~v 922 (1349)
.+|.+|+..|...-
T Consensus 141 ~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 141 TKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665443
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.09 E-value=88 Score=33.64 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred hhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000693 1044 SGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1349)
Q Consensus 1044 Lrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~ 1109 (1349)
+...=..|..|..++..+...+..|..+|. .-.+..|.++|...+..+...+..+...+..|.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~--~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA--SLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444577777777777777777777775 4557778888888888888888877777777765
No 213
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.04 E-value=61 Score=30.51 Aligned_cols=64 Identities=33% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei 925 (1349)
++++..++.++=-.|..|+.++.++..+...+..++..+...+.+|+.......+.|+..+..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555666666666666666666666677777777777766666666666555444
No 214
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.49 E-value=4.5e+02 Score=33.62 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=129.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHH
Q 000693 978 DIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTED 1057 (1349)
Q Consensus 978 ~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~E 1057 (1349)
|++.-.|.+.|.+..+.|-.++ +.+|.+.=+.+--+|+ .+=..++-=-+-+..++.-+..+-.++.+.+..
T Consensus 254 d~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie-------~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~ 324 (570)
T COG4477 254 DSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIE-------SLYDLLEREVEAKNVVEENLPILPDYLEKAKEN 324 (570)
T ss_pred HHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 4555566666666666666666 5555444444444443 233333333333444555356666777777777
Q ss_pred HHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1058 LALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAA 1137 (1349)
Q Consensus 1058 I~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~ 1137 (1349)
-..+..+|..+...- ..+-.++.. ++.....+..+...+..+....+..-.-+
T Consensus 325 n~~L~~Eie~V~~sY-------~l~e~e~~~-vr~~e~eL~el~~~~~~i~~~~~~~~~~y------------------- 377 (570)
T COG4477 325 NEHLKEEIERVKESY-------RLAETELGS-VRKFEKELKELESVLDEILENIEAQEVAY------------------- 377 (570)
T ss_pred HHHHHHHHHHHHHHh-------ccChhHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccH-------------------
Confidence 777777777755443 122333333 33455555555555555555443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHH-HHHH-HHHHHHHHHHHHHH
Q 000693 1138 EKFALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNA-LYEQ-VIQLQRELQIAQTA 1212 (1349)
Q Consensus 1138 ~K~nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~-~~~~-l~~~~~ql~~l~~a 1212 (1349)
+.++..+.+..+.+..++.. +.+.+..|...=..|+..+..........-+-+.. .+-+ =..+++-|..+.+.
T Consensus 378 --S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 378 --SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhH
Confidence 22233333333333333332 33334444444444444444433333222222222 1101 12344555555555
Q ss_pred HHHh----hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1213 IAEQ----RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1213 I~~y----~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
|++- ..+|=+. ....+-+.-....|..++..-..+.....-.++-++=+++.-+
T Consensus 456 i~~l~~eLse~pinm-~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRYRs 513 (570)
T COG4477 456 IQDLMKELSEVPINM-EAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRYRS 513 (570)
T ss_pred HHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554 7777788 7777888888888888887777777776666666665555544
No 215
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.45 E-value=2.8e+02 Score=31.24 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQ 1210 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~ 1210 (1349)
+..+++.|..++..-+...+.....|...-..=+.+.++|..+.++|..-|
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nY 186 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNY 186 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899998888888889999999999999999999999999998755
No 216
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.75 E-value=3.1e+02 Score=31.63 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=58.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000693 869 VTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSR 948 (1349)
Q Consensus 869 l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~ 948 (1349)
|.++++..+.|+.....+.-+...+....+..-....+. +..|+.+|+.+.+-+..+.+.|+.++..-++ |.|
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q---~s~Leddlsqt~aikeql~kyiReLEQaNDd----LEr 126 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ---ESQLEDDLSQTHAIKEQLRKYIRELEQANDD----LER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHH
Confidence 334444444444444444443333333333322222222 2344445555555566666666655554444 433
Q ss_pred HHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 000693 949 ALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQI 995 (1349)
Q Consensus 949 ~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i 995 (1349)
+ -.+++-.....+..|+-||++.+==++| |-+|=..|+++-
T Consensus 127 a---kRati~sleDfeqrLnqAIErnAfLESE---LdEke~llesvq 167 (333)
T KOG1853|consen 127 A---KRATIYSLEDFEQRLNQAIERNAFLESE---LDEKEVLLESVQ 167 (333)
T ss_pred h---hhhhhhhHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Confidence 2 2466777888889999999886655433 344445555543
No 217
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.59 E-value=3.4e+02 Score=31.90 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=67.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHhhHHHHHHH-------HHHhhhHHHHHHHH
Q 000693 1126 KSEIESLKAQA-AEKFALETRIKELEELLVNVETQ---FKEEVENVKVSAAGKEAELNS-------KLEDHAHEVKDRNA 1194 (1349)
Q Consensus 1126 k~~I~~le~~L-~~K~nLe~~Iee~e~~i~~le~~---l~eEIe~Lq~e~~~a~a~L~~-------~~~e~~~~e~~~q~ 1194 (1349)
...|+.++..+ .-..++..+|...+..+..+... ++..|+.-..++..++..|.. ++++++.-+.+++.
T Consensus 157 ~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 44566666666 44455666666666666655554 666676666677777666665 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000693 1195 LYEQVIQLQRELQIAQTAIAEQ 1216 (1349)
Q Consensus 1195 ~~~~l~~~~~ql~~l~~aI~~y 1216 (1349)
.++.+..-...+.-+.+.+..|
T Consensus 237 lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 237 LYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 9999998888888888888877
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.26 E-value=58 Score=30.38 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHh
Q 000693 858 LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELL 918 (1349)
Q Consensus 858 l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL 918 (1349)
|++++..++..|..+.|.+...+.....+..+.+.....+........+|++++..+..+|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655555555555555555555555555555555555555543
No 219
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.19 E-value=4.1e+02 Score=32.52 Aligned_cols=146 Identities=20% Similarity=0.228 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Q 000693 827 AKSFSEKLKNLEGQVKMYE-EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNN 905 (1349)
Q Consensus 827 ~~~l~k~L~~lq~qik~~q-~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~ 905 (1349)
...|...|..|+.++.-++ ..++...+|+.++-.+++.+...-.... .......++..+-.-+..+.....
T Consensus 241 ~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~--------~~~~~e~KI~eLy~~l~~~~~~~~ 312 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAK--------EDAEQESKIDELYEILPRWDPYAP 312 (388)
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccc--------ccccchhHHHHHHHHHHHHHHHhh
Confidence 5567788888888888884 5677777888888888887654433221 112233445555555555555555
Q ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 000693 906 QLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLN 985 (1349)
Q Consensus 906 kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~ 985 (1349)
-|=.=+..|.+ |+..+.+.......+..++....+|...+..--++ +..++..+.+.+..+... ++.|.
T Consensus 313 ~lP~lv~RL~t-L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~-------L~~ve~~~~~N~~~i~~n---~~~le 381 (388)
T PF04912_consen 313 SLPSLVERLKT-LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEEL-------LNKVEEKFKENMETIEKN---VKKLE 381 (388)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---HHHHH
Confidence 55555566666 77788888888888888888888888777443322 334444466666665554 55555
Q ss_pred HHHHHH
Q 000693 986 EKVSVL 991 (1349)
Q Consensus 986 ~~~~~l 991 (1349)
.++..|
T Consensus 382 ~Ri~~L 387 (388)
T PF04912_consen 382 ERIAKL 387 (388)
T ss_pred HHHhcc
Confidence 555444
No 220
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.00 E-value=14 Score=43.79 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000693 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1349)
Q Consensus 511 ~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEE 590 (1349)
...++..|...++.+..-+.+....++.+...+..++..+..+...+..+...+......|..|+..+..+...+.+|..
T Consensus 54 lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks 133 (326)
T PF04582_consen 54 LSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS 133 (326)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 33333344444444444444444444444444444444444444444444444445555555555555555555555555
Q ss_pred HHHHHHHHHhhHHHHhh
Q 000693 591 ELRITKERSAEDEDRAN 607 (1349)
Q Consensus 591 ele~L~EeLeE~e~r~k 607 (1349)
......-.+...+.|.+
T Consensus 134 dVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 134 DVSTQALNITDLESRVK 150 (326)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchHhhHHHHHH
Confidence 55544444444444433
No 221
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=58.52 E-value=3.2e+02 Score=31.07 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=11.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Q 000693 501 LRELEPRFIAAEQRSVELEQQLNLV 525 (1349)
Q Consensus 501 l~~l~~~~~~~e~k~keLE~Ql~el 525 (1349)
...+......+=..+..+..++..+
T Consensus 40 ~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 40 AAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 4444444444444444444444444
No 222
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=57.67 E-value=3.7e+02 Score=31.51 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=57.9
Q ss_pred hhhhhhh-hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 622 TSHSKLE-GTGKRVNELELLLEAEKYRIQ----ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVA 696 (1349)
Q Consensus 622 ~~k~kLE-e~~~~leelEe~LE~~K~Rlq----ELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~ 696 (1349)
.|+.-|- -+...+.+++..+++.+...+ .++..-.+|.|.-...+ .-......++.+...+-..|..++..
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e----~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE----EEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 4443333 233555666666666644333 44443344444333333 23333444555544554555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 697 LQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQE 751 (1349)
Q Consensus 697 L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~ 751 (1349)
-..+ .-.+.--+..+.-|+..+...+.+++-++..+..++.+++-.+.
T Consensus 83 rqKl-------shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 83 RQKL-------SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHh-------hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22222224455566666666666666666666666666554443
No 223
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.06 E-value=2.9e+02 Score=29.98 Aligned_cols=79 Identities=25% Similarity=0.255 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 000693 918 LDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKS 997 (1349)
Q Consensus 918 L~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 997 (1349)
|...++......-++.-+..++..|..+..+.-++...++.+..+++-.+ +.+.++|-.++..|++....
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~----------~~e~k~L~~~v~~Le~e~r~ 107 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQW----------RQERKDLQSQVEQLEEENRQ 107 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888888888988888888888888887777665444 34688899999999999988
Q ss_pred HHHHHHHhh
Q 000693 998 YEEQAREAS 1006 (1349)
Q Consensus 998 ~ee~~~~~~ 1006 (1349)
++..+...+
T Consensus 108 L~~~~~~~~ 116 (158)
T PF09744_consen 108 LELKLKNLS 116 (158)
T ss_pred HHHHhhhhh
Confidence 887765533
No 224
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=56.96 E-value=4.9e+02 Score=32.66 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hCCchhhHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAH--EVKDRNALYEQVIQLQRELQIAQTAIA---EQ-RGADSQKDSEREAALKS 1233 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~--~e~~~q~~~~~l~~~~~ql~~l~~aI~---~y-~~g~~qL~~e~e~elk~ 1233 (1349)
+..++.........++..|..++.++-- =..........|+.+-.++..+..... .| ..+.|+. ......|..
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV-~~l~~rI~a 325 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLI-PRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hHHHHHHHH
Confidence 5566666666666677777776666532 122223333444555555555544444 54 5666777 666666666
Q ss_pred HHHHHHHHHHHHH
Q 000693 1234 SLEELGAKNKEAA 1246 (1349)
Q Consensus 1234 le~ei~~le~ei~ 1246 (1349)
++.+|......+.
T Consensus 326 Le~QIa~er~kl~ 338 (434)
T PRK15178 326 LEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666554
No 225
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.87 E-value=2.3e+02 Score=28.74 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=44.3
Q ss_pred hhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 000693 1166 NVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKE 1244 (1349)
Q Consensus 1166 ~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le~e 1244 (1349)
.++-.+......+.............+...-..|...+-.|+..-.....- ..+.... ..-.+.......+|..+..+
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a-~~e~k~~~~k~~ei~~l~~~ 89 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRA-EEEKKKKEEKEAEIKKLKAE 89 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443333322222 1111111 22234444555666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000693 1245 AALLQNKVAELEQKLQQA 1262 (1349)
Q Consensus 1245 i~~lt~eIneLeqkL~dS 1262 (1349)
|..+...|..+...|...
T Consensus 90 l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 90 LEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666644
No 226
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=56.52 E-value=17 Score=43.09 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 000693 827 AKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQ 906 (1349)
Q Consensus 827 ~~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~k 906 (1349)
+..|+..+..+.+.|-++.-.+.+...-+..+.++|..+...+.++...+..+...+..+...+......+..+...+..
T Consensus 44 v~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~ 123 (326)
T PF04582_consen 44 VASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSA 123 (326)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhh
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000693 907 LKSKVAELQELLDSAISEKEATGQQLASHM 936 (1349)
Q Consensus 907 Leski~~LEseL~~~vsei~~l~eEik~le 936 (1349)
+..++..|...+......|..+..+++.++
T Consensus 124 lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 124 LSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 444444444444444444444444444443
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.49 E-value=1.4e+02 Score=33.51 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 000693 514 RSVELEQQLNLVELKSSDS 532 (1349)
Q Consensus 514 k~keLE~Ql~elq~K~~e~ 532 (1349)
+...++.++..++.++.++
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 228
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.37 E-value=3.3e+02 Score=30.45 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=23.0
Q ss_pred hHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 361 LEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1349)
Q Consensus 361 l~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~ 415 (1349)
++.+..+++|.. .-+.-.|.+.+..+..++..+..+......++..+.++..
T Consensus 14 ~~~~ld~~EDP~---~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~ 65 (221)
T PF04012_consen 14 INELLDKAEDPE---KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEE 65 (221)
T ss_pred HHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544 3334444444444444444444444444444444444433
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.43 E-value=1.9e+02 Score=32.21 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=47.7
Q ss_pred HHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 000693 363 DIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRN 433 (1349)
Q Consensus 363 ~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~ 433 (1349)
.+..++.+.-.....+...|.+++..|.+++.....+...+...++.+.-+.+....+...+..++-+...
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555667777788888888888888888888777777766666666666666555555554443
No 230
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.34 E-value=3.5e+02 Score=30.48 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhHHHHHH
Q 000693 659 EKKCEEAEAGSKQYSDK 675 (1349)
Q Consensus 659 EKK~k~~eqeL~el~~~ 675 (1349)
+.....|+.+...|...
T Consensus 155 e~q~~~Fe~ER~~W~eE 171 (202)
T PF06818_consen 155 EEQRSSFEQERRTWQEE 171 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445666666666543
No 231
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.24 E-value=3.4e+02 Score=30.31 Aligned_cols=110 Identities=14% Similarity=0.210 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHhHHhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHH
Q 000693 300 LSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVE 379 (1349)
Q Consensus 300 l~Ks~~~dlE~rl~~ee~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~ 379 (1349)
+..+.|+|++..+...++-+...........+....+...+.+++.. ...+..+.+|..+.. +-
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~--------------A~~Al~~g~edLAr~--al 90 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ--------------AELALAAGREDLARE--AL 90 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHcCCHHHHHH--HH
Confidence 34467788887777777766666666666666666665555555542 233333444444432 22
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000693 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCS 425 (1349)
Q Consensus 380 ~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~ 425 (1349)
.++..++..+..++..+.........+...+..+...+.+++....
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433333
No 232
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=54.85 E-value=3.6e+02 Score=30.48 Aligned_cols=172 Identities=13% Similarity=0.105 Sum_probs=84.8
Q ss_pred hhhhHHHHHhhhhhhHhhhhchHHH---HHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHH
Q 000693 1026 LESTVEELQTRSGHFERESGGLVET---NLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTS 1102 (1349)
Q Consensus 1026 ~e~~v~elk~k~~~~EseLrk~v~~---i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrk 1102 (1349)
.|.-+...+.-++.++..|+.+... +++-.+++...-..+..--..|+ ..+...++...=.....+.+.++.+-.
T Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~--~~E~~~~Ls~al~~la~~~~ki~~~~~ 87 (224)
T cd07623 10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLS--NCEEHTSLSRALSQLAEVEEKIEQLHG 87 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444 44444555544444444444444 222223333333344444444444443
Q ss_pred H-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHhhHHHHHHH
Q 000693 1103 E-VQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQ-FKEEVENVKVSAAGKEAELNS 1180 (1349)
Q Consensus 1103 e-i~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~-l~eEIe~Lq~e~~~a~a~L~~ 1180 (1349)
. -+......-....++-++.+.++.-+..=..-+...++....+...+..+..+... -...|..+..++..++.....
T Consensus 88 ~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~ 167 (224)
T cd07623 88 EQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDR 167 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence 3 23333334444555555555555555554444555555555555555555555433 112455556666666666666
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 000693 1181 KLEDHAHEVKDRNALYEQV 1199 (1349)
Q Consensus 1181 ~~~e~~~~e~~~q~~~~~l 1199 (1349)
...+++.....+..++..+
T Consensus 168 a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 168 GQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555544
No 233
>PLN02939 transferase, transferring glycosyl groups
Probab=54.47 E-value=7.6e+02 Score=34.11 Aligned_cols=197 Identities=20% Similarity=0.181 Sum_probs=97.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTE 941 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~ 941 (1349)
++.+-..+..+|..|--|.+-...+-..+.....+.+.+...+.-|+-++......+.-+.... ....-++.+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 205 (977)
T PLN02939 130 LEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEK----IHVEILEEQLEK 205 (977)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhcc----ccchhhHHHHHH
Confidence 3444455555666665555555555554444444555555555555444444333222221111 111223455666
Q ss_pred HHHHHHHHHh-----H--hHhHHhhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-------HHHHHHHHHHHHhhh
Q 000693 942 LTEQHSRALE-----L--HSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLE-------GQIKSYEEQAREAST 1007 (1349)
Q Consensus 942 Ls~els~~~~-----~--~~~~~~~~~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~-------~~i~~~ee~~~~~~~ 1007 (1349)
|..++.-.+. . .+-.=..+.+.+..|...++.++.+=.++.+--+.+-.|+ +-+..+|-.. ..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 283 (977)
T PLN02939 206 LRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF--IVA 283 (977)
T ss_pred HhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--Hhh
Confidence 6666611111 1 1222345678888999999999999888888888775544 4455555333 333
Q ss_pred hhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHh
Q 000693 1008 VAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKL 1072 (1349)
Q Consensus 1008 ~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eL 1072 (1349)
.+|..|.-- .+++-+=..|+.++.-++. ..+-++..+-.-..-.++..+|+.|...|
T Consensus 284 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 284 QEDVSKLSP----LQYDCWWEKVENLQDLLDR----ATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred hhhhhhccc----hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 334333211 0111222233333322222 23334444444444556666677666666
No 234
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.40 E-value=3.6e+02 Score=30.36 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=37.6
Q ss_pred cHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000693 461 SLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQL 522 (1349)
Q Consensus 461 ~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql 522 (1349)
.+++.-..-|+-..+++|-+.++.+.|..++..+-.....-..++............++.+-
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777777777777777666666665555555555555555555555444
No 235
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=53.42 E-value=5.2e+02 Score=31.93 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=62.2
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHH---------
Q 000693 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAIS--------- 923 (1349)
Q Consensus 853 ~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vs--------- 923 (1349)
++.+-++.+-.--+.-|.++-|+.-++++.+..-.+ .-...+|+.+.+|+.+.+.|+..|+.+|+
T Consensus 165 ~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqE------alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 165 NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQE------ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Confidence 455555555444444556666666666665544433 23457889999999999999999887654
Q ss_pred --------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 924 --------EKEATGQQLASHMNTVTELTEQHSRAL 950 (1349)
Q Consensus 924 --------ei~~l~eEik~le~qIe~Ls~els~~~ 950 (1349)
+......-|..+.+.|.+|...+++..
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455567788899999999996654
No 236
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.99 E-value=3e+02 Score=28.99 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=12.7
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000693 1171 AAGKEAELNSKLEDHAHEVKDRNALYEQVI 1200 (1349)
Q Consensus 1171 ~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~ 1200 (1349)
+......+..+...+.+...++..++++|.
T Consensus 117 ~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 117 LQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 237
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=52.77 E-value=4.1e+02 Score=30.45 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccch-hhhhHHHHHHHHHHHHHHHH
Q 000693 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDS-EAKSFSEKLKNLEGQVKMYE 845 (1349)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~-E~~~l~k~L~~lq~qik~~q 845 (1349)
-..-+.+......++..++..|+.+.++|.+.. ..+....+.+++.-.+.+...-. =...+...+..|..-+..+.
T Consensus 29 r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888999999999999999999988 44455666666552222221111 12223355555555555555
Q ss_pred HHHHHHH
Q 000693 846 EQLAEAA 852 (1349)
Q Consensus 846 ~~~~ea~ 852 (1349)
..+.+.+
T Consensus 106 ~~i~ee~ 112 (247)
T PF06705_consen 106 EEIQEEK 112 (247)
T ss_pred HHHHHHH
Confidence 5555444
No 238
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.32 E-value=6.5e+02 Score=32.72 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=68.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000693 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1349)
Q Consensus 332 ~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~ 411 (1349)
..+-+.++|..-...+.+|+.-+.-|-.-|.+..--|+.+.--+.+++.+-=++-+.|++| +-.+..+++...
T Consensus 126 QvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL-------KLkltalEkeq~ 198 (861)
T KOG1899|consen 126 QVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL-------KLKLTALEKEQN 198 (861)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh-------HHHHHHHHHHhh
Confidence 4555566666666666666666666665565555555666555555444444444444444 444444444444
Q ss_pred HhhhhHHHHHHHHHHHH--------HHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch
Q 000693 412 DLTGNIARMKELCSELE--------EKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1349)
Q Consensus 412 DLe~~~~el~~~l~~LE--------eeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~ 480 (1349)
+.+.+...-+.++..|- .+--+..-.++ |-+.|+.-|+-.+.++..+-......+.++.
T Consensus 199 e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klk----------stk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~ 265 (861)
T KOG1899|consen 199 ETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLK----------STKGEMAPLREQRSEKNDEEMRLLRTLVQRL 265 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------cccchhhhHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44443333333333332 11111111222 2334777777777777666666666666554
No 239
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.27 E-value=3.4e+02 Score=29.41 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhH
Q 000693 1096 LTQKLTSEVQGLQTQLEAQLNEKKATEETF-KSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEE---VENVKVSA 1171 (1349)
Q Consensus 1096 ~ir~Lrkei~~Lq~eke~k~~eis~LE~~i-k~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eE---Ie~Lq~e~ 1171 (1349)
.+..+|-....+..........+...+..- -+.+.-++.---+...+...|++....+..+...+... +..+....
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl 86 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKL 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443333333322 33344444444445556666666666666666552222 22222233
Q ss_pred hhHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh---hCCchhhH--HHHHHHHHHHHHHHHHHHH
Q 000693 1172 AGKEAELNSKLEDHAHEVKDRN---ALYEQVIQLQRELQIAQTAIAEQ---RGADSQKD--SEREAALKSSLEELGAKNK 1243 (1349)
Q Consensus 1172 ~~a~a~L~~~~~e~~~~e~~~q---~~~~~l~~~~~ql~~l~~aI~~y---~~g~~qL~--~e~e~elk~le~ei~~le~ 1243 (1349)
......+.....+.......+. ..+..+..-.+.+...+..+... -+.|+-+. ..|...+..+...|..++.
T Consensus 87 ~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 87 HFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333222 23333333333344444444333 12344430 2444555555555555555
Q ss_pred HHHHHHHHH
Q 000693 1244 EAALLQNKV 1252 (1349)
Q Consensus 1244 ei~~lt~eI 1252 (1349)
.+..++..|
T Consensus 167 k~~~l~~~i 175 (177)
T PF13870_consen 167 KVEILEMRI 175 (177)
T ss_pred HHHHHHHhh
Confidence 555544443
No 240
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.96 E-value=81 Score=35.52 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHh
Q 000693 845 EEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELL 918 (1349)
Q Consensus 845 q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL 918 (1349)
.+...+.+.++.-+..|-+.++..|.-++......+..+..+..+.+.+...+..+-..+..|+.+.+.|+..+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 34445555555556666666666666666666666666666666655555566666666666666666666543
No 241
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.44 E-value=3.7e+02 Score=29.97 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1349)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~ 569 (1349)
+.+..+.....+..|+..=-+...-...|.. +-.+.......-.....+..++.....+...++..+..++.++..++.
T Consensus 67 ~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 67 SRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred cHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444554444444444431111122222222 334444555555555555666555555566666666666666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
....+..........+..+....+.+.+.+..
T Consensus 146 ~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 146 QAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555556666666666655555555
No 242
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.50 E-value=3e+02 Score=30.52 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1190 KDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVA 1253 (1349)
Q Consensus 1190 ~~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIn 1253 (1349)
.+....+..+..+-.++..+...+..| ..+|..+ .....++......+..-...|-.+..-+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i-~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKI-EKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455566777888888888888999999 8888888 66666666666666666666665555444
No 243
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.93 E-value=6.7e+02 Score=32.15 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 506 PRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN 582 (1349)
Q Consensus 506 ~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~Lq 582 (1349)
-....+++.++.|-..++.++..+.+....+.+|.+..+.|.+.+..+...|..+.--++.-...+..++.++....
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999999999999999999999999999999999999888443
No 244
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.11 E-value=1.7e+02 Score=26.84 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=35.0
Q ss_pred HHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000693 364 IKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIAR 419 (1349)
Q Consensus 364 ~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~e 419 (1349)
+++-|+.|+-.+..+...+....+.--.++..|.........+...+..|...+.+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776666666666666666666655555555555553333
No 245
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=48.45 E-value=6.1e+02 Score=31.24 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000693 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1349)
Q Consensus 511 ~e~k~keLE~Ql~elq~K~~e~erei~eleek 542 (1349)
......-++.|+..+..++..++..+..|..+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555443
No 246
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.78 E-value=1.8e+02 Score=27.21 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELI 577 (1349)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsq 577 (1349)
.|+..+..|+.+++.+.+.+..+......+..+-......+..+-..+..+...+..|..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666555555555555555555444444444444444444
No 247
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.71 E-value=2e+02 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 000693 481 LELEDIIRASNEAAEEAKSQL 501 (1349)
Q Consensus 481 ~EL~~q~~~~~~~~Ek~k~~l 501 (1349)
.-+.-|++++..++..+|.+|
T Consensus 46 ~~v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666554
No 248
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=47.51 E-value=2.9e+02 Score=27.32 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=61.0
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 854 KYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLA 933 (1349)
Q Consensus 854 k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik 933 (1349)
-+.-+.+++.-....+.-++.-....-..+.++.....++...+..+......+..-++.+.. +...|+.++.+...+.
T Consensus 8 ~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~-Ie~~V~~LE~~v~~LD 86 (99)
T PF10046_consen 8 VSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQ-IEEQVTELEQTVYELD 86 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 446788889999999999999999999999999988888888888887777777766666666 5555555555555444
Q ss_pred HH
Q 000693 934 SH 935 (1349)
Q Consensus 934 ~l 935 (1349)
..
T Consensus 87 ~y 88 (99)
T PF10046_consen 87 EY 88 (99)
T ss_pred HH
Confidence 33
No 249
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.07 E-value=6.6e+02 Score=31.28 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1349)
Q Consensus 705 reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1349)
.+++.+++.....+....+....- +.+..-..++..+..+++.+.+....-+.+++.
T Consensus 336 e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~ 392 (446)
T KOG4438|consen 336 ENLTKQLNELKKEKESRRQDLENR--KTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEK 392 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcccchhhccHHHHHHHH
Confidence 466667766655555444444332 335555666666666666666666555555554
No 250
>PF14282 FlxA: FlxA-like protein
Probab=46.50 E-value=88 Score=31.42 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=42.9
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000693 1055 TEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQ 1114 (1349)
Q Consensus 1055 ~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k 1114 (1349)
...|..|..+|..|..+|.....+...+.++-+..++.+..+|..|...|..|+.++-..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666322333556889999999999999999999998888875443
No 251
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.45 E-value=2e+02 Score=28.90 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000693 1195 LYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1266 (1349)
Q Consensus 1195 ~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~ 1266 (1349)
...-...+++.|..+...-.=| .-|+-=........+..+...++.++..|..++.++..+.+++.+.....
T Consensus 32 ~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 32 QLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666666666666667 33333331344455666666777777777777777777777766655543
No 252
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.78 E-value=3.3e+02 Score=34.71 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 336 AKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1349)
Q Consensus 336 ~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~ 415 (1349)
....|.+|-.++..++.....=..|-..+..||+-....+..+...+.+....+..|++||.--+.+. +.+++.|.+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSE 494 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY---EEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 45567788888888888788888899999999999999999999999999999999999999888774 678889999
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 000693 416 NIARMKELCSELEEKLRNSD 435 (1349)
Q Consensus 416 ~~~el~~~l~~LEeeL~~~~ 435 (1349)
-+..+++.+..-.++|..+.
T Consensus 495 HLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88899999988888887763
No 253
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.47 E-value=5.3e+02 Score=29.66 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHh
Q 000693 859 KEELDSYFIKVT 870 (1349)
Q Consensus 859 ~~Ele~~~~~l~ 870 (1349)
+.++......+.
T Consensus 62 ~~~~~~~~~r~~ 73 (302)
T PF10186_consen 62 KREIEELRERLE 73 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 254
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.08 E-value=8.3e+02 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 720 KLQDTSNGYNEKLAEAENLLELLRNDLNMTQER 752 (1349)
Q Consensus 720 ~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k 752 (1349)
+|...++++-..-++..+.++.+|+=+|-....
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~ 310 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLRNYLNNYDKN 310 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhh
Confidence 344444444444455556666666655444333
No 255
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.68 E-value=14 Score=37.04 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=15.6
Q ss_pred CchHHH----HHHHHHHHHHHHHHHcc
Q 000693 1324 PVMTFK----FIIGVALVSVIIGITLG 1346 (1349)
Q Consensus 1324 ~~~~~~----~~~~~~~~~~~~~~~~~ 1346 (1349)
-+++|| ||-|| +|.+.|||||-
T Consensus 42 ~~~a~klssefIsGi-lVGa~iG~llD 67 (116)
T COG5336 42 YAQAFKLSSEFISGI-LVGAGIGWLLD 67 (116)
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345565 66675 78899999874
No 256
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.62 E-value=7.5e+02 Score=31.19 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=61.1
Q ss_pred HHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 000693 365 KLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1349)
Q Consensus 365 ~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~ 436 (1349)
+-+|.+.......+-.+|+.++.+-..++.+.-+...............-..+..+...+...|++|..++.
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666777889999999999999999999999999999999999999999999999999988865
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.53 E-value=3.1e+02 Score=35.40 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000693 565 NDYKDKITQLELILNQSNTRSSELEEELR 593 (1349)
Q Consensus 565 ee~q~kIs~LEsqLk~LqsrireLEEele 593 (1349)
......|..|+..|..-..++..|+..++
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.46 E-value=3.9e+02 Score=34.58 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000693 832 EKLKNLEGQVKMYEEQLAEA 851 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea 851 (1349)
+-++++..+++.|+++..+.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 422 KRIKKLEETVERLEEENSEL 441 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 259
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.53 E-value=1.9e+02 Score=28.68 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1225 SEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQA 1264 (1349)
Q Consensus 1225 ~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~ 1264 (1349)
..+...+..+...++.++..|..++.++..+.+++.+...
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555443
No 260
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.11 E-value=97 Score=30.15 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000693 1196 YEQVIQLQRELQIAQTAIAEQ--RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQG 1269 (1349)
Q Consensus 1196 ~~~l~~~~~ql~~l~~aI~~y--~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~~~~ 1269 (1349)
+..+..+.+.|..+.....-| -|+.=-. ......+..+...++.++.+|..+...++.+..++.+........
T Consensus 28 ~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~-~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 28 LRELELTLEELEKLDDDRKVYKSVGKMFVK-QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHTSSTT-EEEEEETTEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHhHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554445 3333233 345566666777777777777777777777777777666655543
No 261
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.98 E-value=1.1e+03 Score=32.59 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=121.6
Q ss_pred HHHHHHHHhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHH
Q 000693 376 ESVEAVLKTQEAQ-VSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAE 454 (1349)
Q Consensus 376 ~~l~~~I~elea~-i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~E 454 (1349)
.-+.+..+...+. +-..+.+|.++++....++....-=++.+-.+....+.|+.... .|+.|+.
T Consensus 162 ~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE----~~rer~~----------- 226 (1072)
T KOG0979|consen 162 ELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVE----RVRERER----------- 226 (1072)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHH-----------
Confidence 4455666666655 77888888888888777777766666654444444444333322 2233333
Q ss_pred HHHHHhcHHHHhhhhHHHHHHhccch-----HHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000693 455 LELKLKSLEEQHNETGAAAATASQRN-----LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529 (1349)
Q Consensus 455 l~~~~k~lee~~~~~e~~~~~~~qk~-----~EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~ 529 (1349)
+-+.+.++.++- ..-..-.-..+.+-..+|..++.+...+.....+...|+++..+...++
T Consensus 227 --------------~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~ 292 (1072)
T KOG0979|consen 227 --------------KKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI 292 (1072)
T ss_pred --------------HHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
Confidence 223333443332 3333334446777888888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000693 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSEL 588 (1349)
Q Consensus 530 ~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireL 588 (1349)
+...+.+.+...++...-..+...+..+..+...++.+...-...+..+.....-+-.+
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888877777777777766666665555555544333333333
No 262
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=41.64 E-value=3.9e+02 Score=27.03 Aligned_cols=97 Identities=26% Similarity=0.353 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 000693 335 QAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1349)
Q Consensus 335 ~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe 414 (1349)
.++..+..-...+......+..++.+|.....+|.+... ....=|++-++...............+......+..|.
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~---~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI---KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444333 22333444444444555555555555556666666666
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 000693 415 GNIARMKELCSELEEKLRNS 434 (1349)
Q Consensus 415 ~~~~el~~~l~~LEeeL~~~ 434 (1349)
..+..+...+..+++.+...
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655544
No 263
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.61 E-value=6e+02 Score=29.20 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=67.8
Q ss_pred HHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhhhHHHHHHhhhhhhhHHHHHhccch--hhHHHHHHHHHhHHhhhhhhh
Q 000693 246 LETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSK--LQLLDLEQRFSSKEALITNLT 323 (1349)
Q Consensus 246 ~~~~~~~a~~~e~~~~~l~ee~~~~~e~~~k~~k~ee~~~~~~~~l~~~ee~~~l~K--s~~~dlE~rl~~ee~~~~~~r 323 (1349)
|.--+.-...+|++++.|-.-+..+.-+...+...-.....+...|+..++-..|++ +++.|++.++..-..
T Consensus 24 F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~------ 97 (234)
T cd07664 24 FEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQ------ 97 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHH------
Confidence 333344455777777777777777777777777777888888888988877677888 899999988876644
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 000693 324 QELDLIKASESQAKEEISALDNLLADAKENLHAKV 358 (1349)
Q Consensus 324 ~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~ 358 (1349)
..+-.+...+.+.+.+.-+.+...+.-+..+.
T Consensus 98 ---~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~ 129 (234)
T cd07664 98 ---DQAFADFYLFSELLGDYIRLIAAVKGVFDQRM 129 (234)
T ss_pred ---HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11111333344455555555555555444444
No 264
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=40.70 E-value=5.5e+02 Score=28.55 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=36.3
Q ss_pred hhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhh
Q 000693 1025 NLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLS 1073 (1349)
Q Consensus 1025 ~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs 1073 (1349)
+.+..+...+..++.++..|+.+.....++...-.++-..+.++..-+.
T Consensus 21 e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 69 (236)
T PF09325_consen 21 EPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFS 69 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777778888888888878888777773
No 265
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=40.63 E-value=8.8e+02 Score=30.84 Aligned_cols=139 Identities=24% Similarity=0.258 Sum_probs=92.6
Q ss_pred cccchhhhhhhhhccccccccCcccccccCCCccccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhHH
Q 000693 46 LDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQD 125 (1349)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ 125 (1349)
.=|+-||==-=.|++--...-|+|-+++| ...+-|++|||.+-..-.--+++.+.-....-.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPLsPgE------------------~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~ 119 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPLSPGE------------------QGLQRKLKELEDEQKEDEVREKHNKKIIEKFGN 119 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCCCHhH------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44666665444566655666777777777 567899999999988888888888877777777
Q ss_pred HHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHhhhh
Q 000693 126 DVLITKEKLEE-------SGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-----AKRKELAEVKEAFDGL 193 (1349)
Q Consensus 126 el~~~ke~l~~-------~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~e~-----e~~~~L~~~ke~lee~ 193 (1349)
+|.++..-... -+..++-|+.....+.. |++.| +..+..|..+|+-|. +-++-...++..++.+
T Consensus 120 ~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~-i~~~E---~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL 195 (508)
T PF00901_consen 120 DLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGK-IVKEE---NKQLDRLARALQKESRERTQDERKMVEEYRQKIDAL 195 (508)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 77777644332 23344445544444443 44444 446788999999998 3334444566777777
Q ss_pred hHHHHHHHHHHHH
Q 000693 194 SLEIEQSRSRLQE 206 (1349)
Q Consensus 194 ~~~l~~~kkk~q~ 206 (1349)
...++.++-=|++
T Consensus 196 ~~aIe~Er~~m~E 208 (508)
T PF00901_consen 196 KNAIEVEREGMQE 208 (508)
T ss_pred HHHHHHHHhhHHH
Confidence 7777777766665
No 266
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.24 E-value=2e+02 Score=33.66 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHH
Q 000693 845 EEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1349)
Q Consensus 845 q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEs 916 (1349)
..+-+...+++...+.|++.+.++|...|-.+.++...+.+...++..+.-....+...+.-+++++..+..
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445558889999999999999999999999999999999998888888888888888888888776543
No 267
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.47 E-value=4.1e+02 Score=26.67 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENL 738 (1349)
Q Consensus 707 L~eqlee~e~~k~~LE~EieEl~~qLeElE~~ 738 (1349)
+...++.+...+..|+.....+..++.+++..
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433333
No 268
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.98 E-value=3.9e+02 Score=26.33 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHH
Q 000693 340 ISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKE 404 (1349)
Q Consensus 340 ~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~ 404 (1349)
+..++....++...+..|..++..+..++--=.+.+..+..++-.+......+..|+..++....
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444555555444444333333333333333444444444444444444333333
No 269
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.95 E-value=7.9e+02 Score=29.52 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhH-------HHH---------HHHHHHHHHH
Q 000693 678 ELASELEAFQARTSSLEVALQMANDK-ERELTESLNAAADEKRKLQDTSNG-------YNE---------KLAEAENLLE 740 (1349)
Q Consensus 678 ~Lk~ELE~leke~relEt~L~~~~ek-~reL~eqlee~e~~k~~LE~EieE-------l~~---------qLeElE~~Le 740 (1349)
.+...++.+..+.-.++..|..-++. +..|..+.+.+...++.|+..+.. ... -..-..+.+.
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~ 232 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIR 232 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHH
Confidence 34445555555555666655444443 556777777766777776666541 110 1123444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000693 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1349)
Q Consensus 741 ~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~ 795 (1349)
.||.++.-+...+...+.+-.++ -..+...-+....--..++..|..+..++
T Consensus 233 ~Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 233 SLRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666555555544444 33333333333333344444444444443
No 270
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.91 E-value=3.3e+02 Score=25.07 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 561 HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 561 e~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
+..+...+...-.+++.|+....+.+.|..++..+..++++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666677777777778888888888777777766
No 271
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.87 E-value=7.8e+02 Score=29.46 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred chhhhhhhhhhHHhhHHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhhhHHHHHHhhhhhhhHHHHHhccchhhHHHHHH
Q 000693 231 HAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQ 310 (1349)
Q Consensus 231 ~a~~~~qk~lelek~~~~~~~~a~~~e~~~~~l~ee~~~~~e~~~k~~k~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~ 310 (1349)
|+.++++.|++|=+.|+.-+...++|
T Consensus 42 ~~EQAr~~A~~fA~~ld~~~~kl~~M------------------------------------------------------ 67 (301)
T PF06120_consen 42 NAEQARQEAIEFADSLDELKEKLKEM------------------------------------------------------ 67 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhc------------------------------------------------------
Q ss_pred HHHhHHhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHH
Q 000693 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1349)
Q Consensus 311 rl~~ee~~~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~ 390 (1349)
........+..++.-+...++...+++.+|..|...+..|...+.....-...... ........+...+.++...+.
T Consensus 68 s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~---n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 68 SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYII---NHLMSQADATRKLAEATRELA 144 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHH
Q 000693 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELK 458 (1349)
Q Consensus 391 eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~ 458 (1349)
..+..|.........+.+.+.|+...+..+ ++....++.+.=+.|-.......++..+
T Consensus 145 ~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~----------ir~~~~e~~~~~~sl~~~~g~~~ef~~l 202 (301)
T PF06120_consen 145 VAQERLEQMQSKASETQATLNDLTEQRIDL----------IRQKAAEQAGAYNSLKGMNGAHAEFNRL 202 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhccHHHHHHH
No 272
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.34 E-value=3.6e+02 Score=25.40 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000693 554 EEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598 (1349)
Q Consensus 554 E~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~Ee 598 (1349)
.-++.++..+.+.+......++-....+..+...|..+...+.++
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444433
No 273
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.31 E-value=1.5e+02 Score=31.97 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.4
Q ss_pred HHHHHHhhHH
Q 000693 484 EDIIRASNEA 493 (1349)
Q Consensus 484 ~~q~~~~~~~ 493 (1349)
.|.++++|..
T Consensus 20 ~di~~nL~~~ 29 (169)
T PF07106_consen 20 QDIFDNLHNK 29 (169)
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 274
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=37.24 E-value=7.1e+02 Score=28.81 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Q 000693 862 LDSYFIKVTSLESTNEELQRQVVEANNK-ANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVT 940 (1349)
Q Consensus 862 le~~~~~l~~~E~~i~eLe~El~eleee-~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe 940 (1349)
+..-++.|-.+=..|..++.+++++... ...+..-...+.....+|.+-|+-.-- .=........+..++..+....+
T Consensus 9 Vq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karP-Yyea~~~a~~aq~e~q~Aa~~ye 87 (239)
T PF05276_consen 9 VQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARP-YYEARRKAKEAQQEAQKAALQYE 87 (239)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHhHhHHhhhHHHH-----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHh
Q 000693 941 ELTEQHSRALELHSATEARVKEAE-----IQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFE 1015 (1349)
Q Consensus 941 ~Ls~els~~~~~~~~~~~~~~e~~-----~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~ 1015 (1349)
...+-|...-|.-+.+|.+++.-. ...+|+|--.+.+ ..+|..--.--..+
T Consensus 88 rA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~k------------------------VneAE~ek~~ae~e 143 (239)
T PF05276_consen 88 RANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQK------------------------VNEAEQEKTRAERE 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHh-----hhhhcccccCHHHHHHHH
Q 000693 1016 LEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKL-----SATIVEKDETVEQLHASK 1090 (1349)
Q Consensus 1016 ~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eL-----s~~s~g~~~TveELQ~~q 1090 (1349)
-......+...+..+..|..+....-.--+|.-+.-..++..+......|..|...+ . .+.+-++++.|-.++
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~--Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSR--YSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 275
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=37.13 E-value=3.9e+02 Score=25.81 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1220 DSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1220 ~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
|..+ ..+...+..+...|......+..+..++......+..+-...+
T Consensus 44 ~~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 44 VAQL-RNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 7788888888888888888888888888888888888777665
No 276
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.89 E-value=8.4e+02 Score=29.52 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHH
Q 000693 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1349)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l 900 (1349)
+=||+.-.-+++-|.+.+..+-...-|+++|-+.+.-+...-.....++.-+..+..+..-+.-++..+
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444444555555555555444555555555555444444444444443333333333333333333
No 277
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.71 E-value=1.3e+03 Score=31.42 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhh
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAH------------EVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQK 1223 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~------------~e~~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL 1223 (1349)
++.++-.+...|..|-.++..+.+..+. ...--....+-|..+|.-=..++++|..- +|+.+.-
T Consensus 749 ld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~ 825 (980)
T KOG0980|consen 749 LDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRELQTEIVASGRGSASPN 825 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 5555555555555555555555544433 22233345567777888888899999998 6666654
No 278
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.56 E-value=5.6e+02 Score=31.80 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 000693 473 AATASQRNLELEDIIRASNEAAEEAKSQ----LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLST 548 (1349)
Q Consensus 473 ~~~~~qk~~EL~~q~~~~~~~~Ek~k~~----l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~ 548 (1349)
...+.....++.+....+...+++.|.+ +.-+...+.+.++++..||.|++++..-...
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~----------------- 276 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQN----------------- 276 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------------
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH
Q 000693 549 ALKEVEEEKKQLHDQMN-DYKDKITQLELILNQSNTRSSELE 589 (1349)
Q Consensus 549 EL~elE~eLeele~kle-e~q~kIs~LEsqLk~LqsrireLE 589 (1349)
++..+..+|..++.++. ........+.--+...++|+.-+|
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 279
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=35.44 E-value=25 Score=38.23 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHcc
Q 000693 1324 PVMTFKFIIGVALVSVIIGITLG 1346 (1349)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~ 1346 (1349)
..|++=+|+||++|-|+||+|++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~C 100 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFCC 100 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhee
Confidence 34777788999999888999985
No 280
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.41 E-value=1.6e+02 Score=27.25 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000693 542 KLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1349)
Q Consensus 542 kiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLE 589 (1349)
++..|...+.-.+..+.+++.-+..-+..|..|+..+..+..+++.+.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444444444444444444444443
No 281
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.38 E-value=4.9e+02 Score=26.36 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 681 SELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMT 749 (1349)
Q Consensus 681 ~ELE~leke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~ 749 (1349)
.+...+.+...-+...+-.-+++...|...+-.-...++++++++..+.=.-..+..++..|+.+++..
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555666678888888888999999999999988888889998888887744
No 282
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.15 E-value=8e+02 Score=28.80 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=68.1
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHH--
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEE-- 1237 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~e-- 1237 (1349)
+..-|...+..+....+.|+.+...-+....++....--+.++.++|..+++-=-.| -... +.|+.+|+.+-..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~---MdEy-E~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAH---MDEY-EDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---HHHH-HHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444555555555554432222 0123 4566555554332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCccccccccccccccccccccCcchhhhhhhhhh---hc
Q 000693 1238 -----LGAKNKEAALLQNKVAELEQKLQQAQAKLKQGG-EDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAA---AQ 1308 (1349)
Q Consensus 1238 -----i~~le~ei~~lt~eIneLeqkL~dSd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 1308 (1349)
+..|+......+..=-.....+..|=....+|- +.++- +|... ---|-++|+-.|-.|-|-+.-.. |+
T Consensus 186 l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ekl~ee~~~--~d~~g-~~DD~d~D~~~~D~rds~~~~~~n~~pg 262 (338)
T KOG3647|consen 186 LRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPEKLIEEDDD--DDDEG-DLDDEDLDSEIPDIRDSDKLMQQNKRPG 262 (338)
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHHHhhhhhhh--ccccc-cccccccCCCCCchhhHHHHHHcCCCCC
Confidence 556666666666543333344444444444444 22110 11111 12355677777877755444333 66
Q ss_pred cCCC
Q 000693 1309 TSST 1312 (1349)
Q Consensus 1309 ~~~~ 1312 (1349)
|+++
T Consensus 263 tA~~ 266 (338)
T KOG3647|consen 263 TATS 266 (338)
T ss_pred cccc
Confidence 6654
No 283
>PRK04406 hypothetical protein; Provisional
Probab=34.83 E-value=2.5e+02 Score=26.68 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 000693 571 ITQLELILN 579 (1349)
Q Consensus 571 Is~LEsqLk 579 (1349)
|..|+.++.
T Consensus 41 I~~L~~ql~ 49 (75)
T PRK04406 41 ITKMQDQMK 49 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 284
>PRK10698 phage shock protein PspA; Provisional
Probab=34.49 E-value=7.4e+02 Score=28.17 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Q 000693 710 SLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLE 789 (1349)
Q Consensus 710 qlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le 789 (1349)
++.........|...+..|+..|.++..+-..|...++....... +-.-+. |+.-......+...++.|..+++.-+
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~-~~~~~~--~~~~~~a~~~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD-VRRQLD--SGKLDEAMARFESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh--CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444444444444433333333333332 222222 22333344444555555555555444
Q ss_pred H
Q 000693 790 Q 790 (1349)
Q Consensus 790 ~ 790 (1349)
.
T Consensus 184 a 184 (222)
T PRK10698 184 S 184 (222)
T ss_pred H
Confidence 3
No 285
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.41 E-value=7.2e+02 Score=28.01 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHH
Q 000693 319 ITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1349)
Q Consensus 319 ~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~ 398 (1349)
|.+++.+|..+++.+..+.=...-++..+.++......-+.--..+..+.+|..+...-. ........+..|+..+..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~--~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI--EKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333444445555544444444444555555555555555555555556666655543322 344445555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000693 399 VSKEKEALEAAMADLTGNIARMKELC 424 (1349)
Q Consensus 399 ~~~~r~~le~~~~DLe~~~~el~~~l 424 (1349)
.......+...+.+|+..+...+...
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444444433
No 286
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.35 E-value=7.4e+02 Score=33.03 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhhhH
Q 000693 516 VELEQQLNLVELKSSDS 532 (1349)
Q Consensus 516 keLE~Ql~elq~K~~e~ 532 (1349)
..++.|+..+..+..++
T Consensus 314 ~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 314 VNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 287
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.24 E-value=8.4e+02 Score=28.74 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcch
Q 000693 835 KNLEGQVKMYEEQLAEAA-------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSS 894 (1349)
Q Consensus 835 ~~lq~qik~~q~~~~ea~-------~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~ 894 (1349)
..++.++...+..++... .|++-.+.|+++.+-.|.++.+.+|..-.+...++.++..+-
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 778888999999999999999999999999998887654443
No 288
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.00 E-value=2.6e+02 Score=33.04 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1225 SEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1225 ~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
.+.-++|..+...+-.+...+..+..+||.+++.|-.-.++..
T Consensus 157 ~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~~ 199 (300)
T KOG2629|consen 157 SELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFAP 199 (300)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccCC
Confidence 5677888888888889999999999999999999888777774
No 289
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.30 E-value=6.6e+02 Score=30.25 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=42.3
Q ss_pred HHHHHHHHhHHhhhhhhhHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHH
Q 000693 306 LDLEQRFSSKEALITNLTQELDLIKA--SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLK 383 (1349)
Q Consensus 306 ~dlE~rl~~ee~~~~~~r~ele~~kr--~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~ 383 (1349)
.-++.++...++.....+..|...+. -.-+...+.......+.+|+.++..-+.++..+...+-+.--....++.+|.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 33334444444433444444444444 1112222333344455666666666666666666555554445555555555
Q ss_pred hhHHHHHhHH
Q 000693 384 TQEAQVSNVN 393 (1349)
Q Consensus 384 elea~i~eLe 393 (1349)
.++.++....
T Consensus 253 ~l~~~i~~e~ 262 (362)
T TIGR01010 253 SLRKQIDEQR 262 (362)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 290
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.73 E-value=4.2e+02 Score=30.16 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000693 900 LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL 950 (1349)
Q Consensus 900 l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~ 950 (1349)
+...+..++++..-+++++++...+...+..+...+..|++.+.++-.|-+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 344444455555555555555555555555555555555555555544433
No 291
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.49 E-value=8.3e+02 Score=28.15 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=56.9
Q ss_pred hHHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhhhHHHHHHhhhhhhhHHHHHhccch--hhHHHHHHHHHhHHh
Q 000693 245 LLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSK--LQLLDLEQRFSSKEA 317 (1349)
Q Consensus 245 ~~~~~~~~a~~~e~~~~~l~ee~~~~~e~~~k~~k~ee~~~~~~~~l~~~ee~~~l~K--s~~~dlE~rl~~ee~ 317 (1349)
-|+.-+.-...+|++++.|..-+..+.-+...+...-.....+.+.|+..++-..|++ +++.+++.++..--.
T Consensus 23 wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~ 97 (234)
T cd07665 23 WFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 97 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556778888888888888888888888888888888899999988777888 889998888765444
No 292
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.28 E-value=7.6e+02 Score=27.68 Aligned_cols=160 Identities=12% Similarity=0.077 Sum_probs=66.7
Q ss_pred HHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhh-hcccccCHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 000693 1030 VEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSAT-IVEKDETVEQLHASKKAIEDLTQKLTSEVQGL- 1107 (1349)
Q Consensus 1030 v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~-s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~L- 1107 (1349)
+...+..++.++..|+.+...+.++..--.++-+...++...+... ..+...++...-.....+...+..+-...+.=
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e 85 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQD 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555544455555555555544200 22223344444444444444444443332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHhhhhhHhhHHHH
Q 000693 1108 QTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVET-------Q---FKEEVENVKVSAAGKEAE 1177 (1349)
Q Consensus 1108 q~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~-------~---l~eEIe~Lq~e~~~a~a~ 1177 (1349)
.-..-...+++-++...++.-+..=.+.+....++...+...+..+..+.. + +..+|..+......+...
T Consensus 86 ~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~ 165 (216)
T cd07627 86 VLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKE 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122333444444444333333333334444444444444444444321 1 444444444444444444
Q ss_pred HHHHHHhhhHHH
Q 000693 1178 LNSKLEDHAHEV 1189 (1349)
Q Consensus 1178 L~~~~~e~~~~e 1189 (1349)
++.+........
T Consensus 166 ~e~is~~~k~El 177 (216)
T cd07627 166 FEEVSELIKSEL 177 (216)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 293
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.57 E-value=8.7e+02 Score=28.15 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=103.2
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhH----HHHHHHHHHHHhhhhhhhH-HHHHH
Q 000693 821 TSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-------------GKYALL----KEELDSYFIKVTSLESTNE-ELQRQ 882 (1349)
Q Consensus 821 ~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~-------------~k~~~l----~~Ele~~~~~l~~~E~~i~-eLe~E 882 (1349)
-+.+.+..++...+-+|...|.-+.+-+.-.. +++-+| +.+|...+..++++--.+. .+...
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~ 129 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKR 129 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776665543333211 555666 8888887777776654333 44444
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHH
Q 000693 883 VVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKE 962 (1349)
Q Consensus 883 l~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e 962 (1349)
...+...........-.....++.+=..+++++.++............+-..+...|.. .+.++.+
T Consensus 130 ~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~--------------~e~kve~ 195 (243)
T cd07666 130 MKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEK--------------LEDKVEC 195 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--------------HHHHHHH
Confidence 66666666666666666777777777777777777776666555543322233333333 2344555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHHHHHHHHHH
Q 000693 963 AEIQLHEAIQRFTQRDIEANNLNEKV-SVLEGQIKSYEEQ 1001 (1349)
Q Consensus 963 ~~~~l~e~~~~~~~~~~~~~~l~~~~-~~l~~~i~~~ee~ 1001 (1349)
.++.++.=++++.+- -++|+..-| .-++++|.+|+.=
T Consensus 196 a~~~~k~e~~Rf~~~--k~~D~k~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 196 ANNALKADWERWKQN--MQTDLRSAFTDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778887665 688888887 4588888888753
No 294
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.49 E-value=1e+03 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHH
Q 000693 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVN 373 (1349)
Q Consensus 332 ~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~ 373 (1349)
.+.++..+|.+|+..+...+-.|..+..+.+.+...+.-+..
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~ 50 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQE 50 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888777777666644433
No 295
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.34 E-value=7.1e+02 Score=27.06 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHHHHHHHHhh
Q 000693 897 NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQ 976 (1349)
Q Consensus 897 le~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~e~~~~~~~ 976 (1349)
.+....+...+...+..+...+...+.+...+...-+.+..-+-.++....+-. +..+.+||+.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ys-------------E~dik~AYe~--- 85 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYS-------------EEDIKEAYEE--- 85 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------------HHHHHHHHHH---
Confidence 334444555555555555555555666666665555555555544443332211 2345666665
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHH
Q 000693 977 RDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTE 1056 (1349)
Q Consensus 977 ~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~ 1056 (1349)
+.++.-+|..+...-+++- ..-+ +++-.+..+..-..-++...+..-..+.+|..
T Consensus 86 ----A~~lQ~~L~~~re~E~qLr--------------~rRD-------~LErrl~~l~~tierAE~l~sqi~vvl~yL~~ 140 (159)
T PF05384_consen 86 ----AHELQVRLAMLREREKQLR--------------ERRD-------ELERRLRNLEETIERAENLVSQIGVVLNYLSG 140 (159)
T ss_pred ----HHHHHHHHHHHHHHHHHHH--------------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544444333322 2222 34445555555556666655666777888888
Q ss_pred HHHHHHHhHHHHHHHh
Q 000693 1057 DLALYETKLSDLQAKL 1072 (1349)
Q Consensus 1057 EI~~le~qi~dL~~eL 1072 (1349)
++.+....+.++...+
T Consensus 141 dl~~v~~~~e~~~~~q 156 (159)
T PF05384_consen 141 DLQQVSEQIEDAQQKQ 156 (159)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 8888888888776554
No 296
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=31.18 E-value=7.7e+02 Score=27.36 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=48.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 501 LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQ 580 (1349)
Q Consensus 501 l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~ 580 (1349)
-..+...+.+++.+|.-||.|++-+..-+...+.+......+-..+..+-..-...+...-.++.-+......|...-..
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ 138 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSL 138 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777888887777766666666665555543333332112222222333333444444444444444
Q ss_pred HhHHHHHHHHHHH
Q 000693 581 SNTRSSELEEELR 593 (1349)
Q Consensus 581 LqsrireLEEele 593 (1349)
...+|..|++.+.
T Consensus 139 ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 139 AETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 297
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=30.53 E-value=6e+02 Score=25.92 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=41.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000693 1219 ADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1267 (1349)
Q Consensus 1219 g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~dSd~~~~ 1267 (1349)
+++.+ ..+..-+..+...|......+..+...+......+..+....+
T Consensus 59 ~~~~l-~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 59 SALEL-SNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677 7888999999999999999999999999999999988877665
No 298
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.15 E-value=1.9e+03 Score=31.66 Aligned_cols=562 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----HhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHH
Q 000693 319 ITNLTQELDLIKASESQAKEEISALDNLLADAKENLH----AKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNE 394 (1349)
Q Consensus 319 ~~~~r~ele~~kr~~~~~~e~~~~l~~~~~~~~~~l~----~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLee 394 (1349)
+.+.=..++..+..+..+.+.+..|......|..... .+-.++-...++++.-......+...+...+..+..++.
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDA 304 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHh
Q 000693 395 ELDKVSKEKEALEAAMADLT--------GNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQH 466 (1349)
Q Consensus 395 ELe~~~~~r~~le~~~~DLe--------~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~ 466 (1349)
.+..++.....+...+..|. .++.+++..+..+...+...........+ -+....+.+.+..
T Consensus 305 ~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~----------~~e~~~~~~~~~~ 374 (1353)
T TIGR02680 305 RTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAES----------RLEEERRRLDEEA 374 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhccchHHHH-----------------------------------HHHHHhhHHHHHHHHHHhhhhhhHHHH
Q 000693 467 NETGAAAATASQRNLELE-----------------------------------DIIRASNEAAEEAKSQLRELEPRFIAA 511 (1349)
Q Consensus 467 ~~~e~~~~~~~qk~~EL~-----------------------------------~q~~~~~~~~Ek~k~~l~~l~~~~~~~ 511 (1349)
.........+..-..+|. ..++...+.+...-..|..+......+
T Consensus 375 ~r~~~~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~a 454 (1353)
T TIGR02680 375 GRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRA 454 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HH
Q 000693 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQL-----------------------------HD 562 (1349)
Q Consensus 512 e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeel-----------------------------e~ 562 (1349)
......+.....++............. ...........-.+....... ..
T Consensus 455 ~~~~~~~~~~~~el~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1353)
T TIGR02680 455 EATHAAARARRDELDEEAEQAAARAEL-ADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAP 533 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHhhhccchhhhhcchhhhhhhhcchhhhhccchH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhh------------------
Q 000693 563 QMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSH------------------ 624 (1349)
Q Consensus 563 klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~rqrs~eLeell~~~k------------------ 624 (1349)
-..-|......+...+......+......+.....++..............-.-..-....+
T Consensus 534 i~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e~~~~~~P~~~~~R~a~r~~~~pgaP~~~l~df~e~ 613 (1353)
T TIGR02680 534 VRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALRTERERLEQGTDRDPPPPHTRAALRRAGRAGAPLWQLVDFADD 613 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHcCCCCCcchhheecCCC
Q ss_pred ---hhhhhhhhhHHHHHHH-------------------------------------------------------------
Q 000693 625 ---SKLEGTGKRVNELELL------------------------------------------------------------- 640 (1349)
Q Consensus 625 ---~kLEe~~~~leelEe~------------------------------------------------------------- 640 (1349)
..-...+.++......
T Consensus 614 v~~~~ra~IEaAL~~~GLLDA~v~p~~~~~~~~~d~~l~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~v~~~L~~ 693 (1353)
T TIGR02680 614 VPADVRAGLEAALEAAGLLDAWVTADGTLQDPDGAVLLHPATVAPGETLADVLRPWLDPPVSAERQPEVDPAAVTRVLEG 693 (1353)
T ss_pred CCHHHHHHHHHHHHHCCCcceeeCCCcccccCCCceeecCCCcccCCCHHhhccCccCCCcchhccccCcHHHHHHHHhh
Q ss_pred ------------------------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000693 641 ------------------------------------------LEAEKYRIQ-ELEEQISKLEKKCEEAEAGSKQYSDKVC 677 (1349)
Q Consensus 641 ------------------------------------------LE~~K~Rlq-ELEeqis~LEKK~k~~eqeL~el~~~l~ 677 (1349)
++..+.+.- +|+..|..+...+..++..+..+.....
T Consensus 694 i~~~~~~~~~~~~~v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~ 773 (1353)
T TIGR02680 694 IACGTADAGAAHTWIDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGARQR 773 (1353)
T ss_pred ccccCCCCCCCCeeECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 678 ELASELEAFQ--ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLES 755 (1349)
Q Consensus 678 ~Lk~ELE~le--ke~relEt~L~~~~ek~reL~eqlee~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~es 755 (1349)
.+..+...+- ..++.--..+......+......+....................+.++-..+.---..-.+.+....
T Consensus 774 ~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~a- 852 (1353)
T TIGR02680 774 ALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLA- 852 (1353)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHH-
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHH
Q 000693 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLK 835 (1349)
Q Consensus 756 iE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~~l~k~L~ 835 (1349)
++. +...+..+...+..+.............+. .++.++.++-+.+.....++..+..++.
T Consensus 853 L~~-----------y~~~l~~l~~~~~~L~~A~~~~~~a~~~le--------~ae~~l~~~~~e~~~~~~e~~~a~~~l~ 913 (1353)
T TIGR02680 853 LKR-----------FGDHLHTLEVAVRELRHAATRAAEQRARAA--------RAESDAREAAEDAAEARAEAEEASLRLR 913 (1353)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHH
Q 000693 836 NLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1349)
Q Consensus 836 ~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~L 914 (1349)
.+...+... +++...++..+..++..+...+..+.+.++.+...+..+..++...............-...-...+
T Consensus 914 ~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~ 989 (1353)
T TIGR02680 914 TLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREF 989 (1353)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 299
>PRK01844 hypothetical protein; Provisional
Probab=30.05 E-value=41 Score=31.64 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=7.5
Q ss_pred HHHHHHHHHccCCC
Q 000693 1336 LVSVIIGITLGKRY 1349 (1349)
Q Consensus 1336 ~~~~~~~~~~~~~~ 1349 (1349)
++.+++|+|++++|
T Consensus 15 i~G~~~Gff~ark~ 28 (72)
T PRK01844 15 VAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555655
No 300
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.95 E-value=8e+02 Score=27.18 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=55.2
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELG 1239 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y~~g~~qL~~e~e~elk~le~ei~ 1239 (1349)
+..+|..|...+..+...|......+........ +-++.-.+.|-.+|..+..++..++.+....++.|.....++.
T Consensus 100 L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~---~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 100 LQEDLQKLTQDWERLRDELEQKEAEWREEEENFN---QYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7788888888888888888887777776666544 3444556678888888888866677774556666666665554
Q ss_pred H
Q 000693 1240 A 1240 (1349)
Q Consensus 1240 ~ 1240 (1349)
.
T Consensus 177 r 177 (182)
T PF15035_consen 177 R 177 (182)
T ss_pred H
Confidence 3
No 301
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.79 E-value=5.1e+02 Score=26.26 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 000693 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMS 609 (1349)
Q Consensus 546 Lq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~~ 609 (1349)
+..+...+......+..-+.+.+.+...|..+|+.....++-++.+.++|...-..+..|...+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666677777777777777777777777777777777776666555544444433
No 302
>PF15102 TMEM154: TMEM154 protein family
Probab=29.51 E-value=29 Score=36.80 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHccCC
Q 000693 1330 FIIGVALVSVIIGITLGKR 1348 (1349)
Q Consensus 1330 ~~~~~~~~~~~~~~~~~~~ 1348 (1349)
+.|++.||+|||+||..||
T Consensus 66 VLLvlLLl~vV~lv~~~kR 84 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKR 84 (146)
T ss_pred HHHHHHHHHHHHheeEEee
Confidence 4455678999999999877
No 303
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.51 E-value=1.3e+03 Score=29.45 Aligned_cols=65 Identities=9% Similarity=0.139 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHH
Q 000693 420 MKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAA 494 (1349)
Q Consensus 420 l~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~ 494 (1349)
....+..+..++......+..-.+ ++..+...++.....++.+.+.+.+-...|..++.++-..+
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEA----------DLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666555555555 66666667777777777777777777777888888844444
No 304
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.28 E-value=6e+02 Score=25.53 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=24.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000693 1179 NSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ 1216 (1349)
Q Consensus 1179 ~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y 1216 (1349)
....+......+.++..+..+...+..+..+...|..+
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566666666677777777777777777776
No 305
>PLN02939 transferase, transferring glycosyl groups
Probab=29.03 E-value=1.7e+03 Score=30.85 Aligned_cols=132 Identities=20% Similarity=0.287 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Q 000693 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKR---KLQDTS 725 (1349)
Q Consensus 650 ELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt-~L~~~~ek~reL~eqlee~e~~k~---~LE~Ei 725 (1349)
+.++.+..++|...-++..+.++...+ -.++..+..+.. .+.-.-+++.+|+.-++..+.+.. -.-.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (977)
T PLN02939 254 ETEERVFKLEKERSLLDASLRELESKF-------IVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQN 326 (977)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555666666666655555544444333 223333333333 222233333344333333322111 112334
Q ss_pred hHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000693 726 NGYNEKLAEAENLLE-----LLRND-LNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA 791 (1349)
Q Consensus 726 eEl~~qLeElE~~Le-----~LR~E-l~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e 791 (1349)
.+++.++..++..|. .++.+ ++++|.++..++..+++. +.++..-..-.+..+...+..|...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 327 QDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS---DHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred hHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554443 33333 256778888888888888 8888888888888888888777654
No 306
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.92 E-value=7.9e+02 Score=26.78 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHH
Q 000693 1024 KNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSE 1103 (1349)
Q Consensus 1024 e~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrke 1103 (1349)
+..++.+.-+..-...--..+...+.....+......+.+.+..|..++. .--+.+
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~------------------------~~~k~~ 74 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQ------------------------NSRKSE 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHH
Q 000693 1104 VQGLQTQLEAQLNEKKATEETFKSEIESLKAQAA-----EKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAEL 1178 (1349)
Q Consensus 1104 i~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~-----~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L 1178 (1349)
++.+..+.+..+.++..|...++..|..+...+. +|..+.......+..|.++..+++.+|..|...+...+..+
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.64 E-value=5.8e+02 Score=25.18 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000693 753 LESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1349)
Q Consensus 753 ~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1349)
.+.+...+..+| .....-+.+-.+-.+.+.+..+++..+..+..+.
T Consensus 11 ~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 11 PEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555666666 3444556666677777788888888887777776
No 308
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.60 E-value=9.5e+02 Score=27.66 Aligned_cols=170 Identities=10% Similarity=-0.008 Sum_probs=75.8
Q ss_pred hhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHH---HhhhhhcccccCHHHHHHHHHHHHHHHHHHH
Q 000693 1025 NLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQA---KLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1349)
Q Consensus 1025 ~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~---eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lr 1101 (1349)
+.|.=+.+.+.-++.++..|+++...+..|..-=+++-.-+.++.. .|+ ..+...++...=+....+.+.+..+-
T Consensus 19 E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~--~~E~~~~Ls~als~laev~~~i~~~~ 96 (234)
T cd07665 19 ESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLG--SSEDNTALSRALSQLAEVEEKIEQLH 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666776766666666665555555555555444 334 33333344444444555555555543
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHhhHHHHHH
Q 000693 1102 SEV-QGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQ-FKEEVENVKVSAAGKEAELN 1179 (1349)
Q Consensus 1102 kei-~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~-l~eEIe~Lq~e~~~a~a~L~ 1179 (1349)
... .....-......++-++.+.|+.-++.=-+-...-.+.+..+..++.....+... -...+..+..++..++.+..
T Consensus 97 ~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~ 176 (234)
T cd07665 97 QEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVT 176 (234)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 222 2223334444555555555553333322222233333334444333333333211 01123333333444444444
Q ss_pred HHHHhhhHHHHHHHHHH
Q 000693 1180 SKLEDHAHEVKDRNALY 1196 (1349)
Q Consensus 1180 ~~~~e~~~~e~~~q~~~ 1196 (1349)
....+++.-...+..++
T Consensus 177 ~a~~~fe~is~~ik~El 193 (234)
T cd07665 177 QYERDFERISATVRKEV 193 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 309
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.55 E-value=1.3e+03 Score=29.03 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 576 LILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 576 sqLk~LqsrireLEEele~L~EeLeE 601 (1349)
..+..++.+++.|+.+...++.-++.
T Consensus 297 le~Enlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666555554444
No 310
>PHA01750 hypothetical protein
Probab=28.54 E-value=3.9e+02 Score=24.87 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1227 REAALKSSLEELGAKNKEAALLQNKVAELEQKLQ 1260 (1349)
Q Consensus 1227 ~e~elk~le~ei~~le~ei~~lt~eIneLeqkL~ 1260 (1349)
...++.++..+|..++..++.++.+|.++.++++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 6678888999999999999999999999988875
No 311
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.62 E-value=6.2e+02 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000693 716 DEKRKLQDTSNGYNEKLAEAENLLELLRN 744 (1349)
Q Consensus 716 ~~k~~LE~EieEl~~qLeElE~~Le~LR~ 744 (1349)
..+..++..+..+..++..++..+..++.
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333
No 312
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.61 E-value=6.7e+02 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 000693 572 TQLELILNQSNTRSSELEE 590 (1349)
Q Consensus 572 s~LEsqLk~LqsrireLEE 590 (1349)
.....++..++..+..|+.
T Consensus 99 ~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 99 SQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 313
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.55 E-value=5.9e+02 Score=28.24 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHH
Q 000693 1013 KFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKA 1092 (1349)
Q Consensus 1013 ~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~ 1092 (1349)
+..++....+++.....+..++..+..+.. -|+.-..-..+-.++..+..++..|..+|..+... .++-|+ .
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~----~ 139 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKYSEN---DPEKIE----K 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHH----H
Confidence 333444444444455555555555555444 34444555666666677777777777776422222 222222 2
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 000693 1093 IEDLTQKLTSEVQGLQTQ 1110 (1349)
Q Consensus 1093 ~ne~ir~Lrkei~~Lq~e 1110 (1349)
+...+..++..++.+|.-
T Consensus 140 ~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDN 157 (188)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333344555555555554
No 314
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.15 E-value=1.2e+03 Score=28.20 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 000693 858 LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMN 937 (1349)
Q Consensus 858 l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~ 937 (1349)
+...+.+....+..++..+...+.++.++...+..+..++......+..|+.++...+..|.....=+..+..+-..=..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 33444444444444444444444444444444444444555555555555555555444444444444444444444444
Q ss_pred hHHHHHHHH
Q 000693 938 TVTELTEQH 946 (1349)
Q Consensus 938 qIe~Ls~el 946 (1349)
++..+...+
T Consensus 299 ~~~~l~~~~ 307 (344)
T PF12777_consen 299 QIEELEEQL 307 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 315
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=27.06 E-value=9.5e+02 Score=27.14 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHH
Q 000693 1164 VENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSERE 1228 (1349)
Q Consensus 1164 Ie~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e 1228 (1349)
++.++.....+.+++...+.+.-.+..=+.. +.+....++|..++++|..| .|....| +.|-
T Consensus 136 ~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLee--nrv~vm~~QL~~f~~a~~ay~sgn~~~L-~~~~ 198 (201)
T cd07660 136 LEEAQRRFQAHKDKYEKLRNDVSVKLKFLEE--NKVKVMHKQLLLFHNAISAYFSGNQKQL-EQTL 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 3344444444444444444444444433333 77999999999999999999 8888888 6553
No 316
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.90 E-value=8.5e+02 Score=26.50 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKK 558 (1349)
Q Consensus 510 ~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLe 558 (1349)
.+...+..+...|.++...+...-.++..+.......+..|..+.+...
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455556666666666666666666666666666666666666655553
No 317
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=26.84 E-value=9.4e+02 Score=27.02 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH---------------HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhh
Q 000693 965 IQLHEAIQRFTQRDIEANNLNEKVSVLEGQI---------------KSYEEQAREASTVAETRKFELEETLLKLKNLEST 1029 (1349)
Q Consensus 965 ~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i---------------~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~ 1029 (1349)
..++.+++.+...+--...-..+|..|+..- ......+..+..+.+.|...|+.-...+......
T Consensus 18 e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e 97 (204)
T PF10368_consen 18 EQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEE 97 (204)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777787777632 4455566667777777777776555555555555
Q ss_pred HHHHHhhhhhhHhh-hhchHHHHHh-------HHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHH
Q 000693 1030 VEELQTRSGHFERE-SGGLVETNLK-------LTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1349)
Q Consensus 1030 v~elk~k~~~~Ese-Lrk~v~~i~r-------L~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lr 1101 (1349)
+..+..-.+.++.. +++.+..... ....+.+.-...=.+..+|=........|.++|+.....+|..-+.+.
T Consensus 98 ~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~ 177 (204)
T PF10368_consen 98 FKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVN 177 (204)
T ss_dssp HTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 54444433333321 1111211111 112222222333345666621255567799999999999999998888
Q ss_pred HHHHhhHHHHHHH
Q 000693 1102 SEVQGLQTQLEAQ 1114 (1349)
Q Consensus 1102 kei~~Lq~eke~k 1114 (1349)
.....+......-
T Consensus 178 ~~~~~fn~~t~~y 190 (204)
T PF10368_consen 178 KQKEKFNEYTKKY 190 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554333
No 318
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.81 E-value=1.1e+03 Score=27.95 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000693 1124 TFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQ 1203 (1349)
Q Consensus 1124 ~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~~~q~~~~~l~~~~ 1203 (1349)
.|..++++....|.+- -+.|.-.-..|+.-+..+...+..|-.+..+|.+.|.+++......-.-+...-..|++..
T Consensus 238 nIe~~~~~~~~~Ldkl---h~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm 314 (384)
T KOG0972|consen 238 NIEQKVGNVGPYLDKL---HKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVM 314 (384)
T ss_pred HHHHhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3344455555555332 2333333333333333388899999999999999999999999888888888888999999
Q ss_pred HHHHHHHHHHHHh---hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1204 RELQIAQTAIAEQ---RGADSQKDSEREAALKSSLEELGAKNKEAALLQN 1250 (1349)
Q Consensus 1204 ~ql~~l~~aI~~y---~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~ 1250 (1349)
+.+..+...|-.. ..+.+-| -....++..++.+...++-+|..+..
T Consensus 315 ~e~E~~KqemEe~G~~msDGapl-vkIkqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 315 DEIEQLKQEMEEQGAKMSDGAPL-VKIKQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHhcccccCCchH-HHHHHHHHHHHHHHHhhhhheehhhH
Confidence 9999999999887 2233334 34666666666666666655554443
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.57 E-value=1e+03 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000693 658 LEKKCEEAEAGSKQYSDKVCELASELEAFQ 687 (1349)
Q Consensus 658 LEKK~k~~eqeL~el~~~l~~Lk~ELE~le 687 (1349)
|.-+++.|..+...+...+.+++..|+...
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666677766665443
No 320
>PRK04325 hypothetical protein; Provisional
Probab=26.27 E-value=3.7e+02 Score=25.43 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000693 565 NDYKDKITQLELILNQSN 582 (1349)
Q Consensus 565 ee~q~kIs~LEsqLk~Lq 582 (1349)
-.-+..|..|+.++..+.
T Consensus 33 ~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 33 ARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 321
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.02 E-value=2.5e+02 Score=25.47 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 892 NSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLA 933 (1349)
Q Consensus 892 ~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik 933 (1349)
.|.+++..|...+..|.+++..+...+-....+..|++.+|.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444554444444455556666666553
No 322
>PRK04406 hypothetical protein; Provisional
Probab=25.97 E-value=4.1e+02 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 000693 564 MNDYKDKITQLELILNQSNTRSSEL 588 (1349)
Q Consensus 564 lee~q~kIs~LEsqLk~LqsrireL 588 (1349)
|+.+...+...+..|..+..+++.|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 323
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.68 E-value=2.2e+02 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHH
Q 000693 98 KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEE 136 (1349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~ 136 (1349)
++.+||.++.++...+-....+++.+.+.+.++++...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999888887777777777777766643
No 324
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.58 E-value=7.9e+02 Score=26.84 Aligned_cols=127 Identities=15% Similarity=0.257 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----
Q 000693 784 QTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYALL---- 858 (1349)
Q Consensus 784 ~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~eal~~~~~~~~E~~-~l~k~L~~lq~qik~~q~~~~ea~~k~~~l---- 858 (1349)
.+.-|-+.+.+++.+.+.- |+-+.+||--.-|- --|--+ =|.|+..+.-|.+.=...
T Consensus 16 AEtVLrhIReG~TQL~AFe------------Evg~~L~RTsAACGFRWNs~V------RkqY~~~i~~AKkqRk~~~~~~ 77 (161)
T TIGR02894 16 AETVLRHIREGSTQLSAFE------------EVGRALNRTAAACGFRWNAYV------RKQYEEAIELAKKQRKELKREA 77 (161)
T ss_pred HHHHHHHHhcchHHHHHHH------------HHHHHHcccHHHhcchHHHHH------HHHHHHHHHHHHHHHhccccCc
Confidence 4455667777777776332 25555555544442 001111 135666655555111111
Q ss_pred ----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Q 000693 859 ----KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1349)
Q Consensus 859 ----~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l 928 (1349)
-..+..|+..+...-.....+..+...+..++..+...+..+..++..|..+...++.+-...+.=|.++
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345555555555444455566666666666666666666666666666666666666555555444443
No 325
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.55 E-value=7.9e+02 Score=29.08 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 000693 354 LHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRN 433 (1349)
Q Consensus 354 l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~ 433 (1349)
|+.|+--+--+.+||-|-.....+-...|.++.+++...+++-=+++=-|--+.=.+.+...++..|+..++-+..-|..
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q ss_pred hhh-----------hhhhhhhhh
Q 000693 434 SDE-----------NFCKTDSLL 445 (1349)
Q Consensus 434 ~~~-----------e~~K~e~~l 445 (1349)
.+. -++|-|++|
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHH
No 326
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.54 E-value=2.3e+02 Score=27.74 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHhhHHHHHhHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000693 378 VEAVLKTQEAQVSNVNEELDKVSKEKEAL---EAAMADLTGNIARMKELCSELEEKLRNSDENFCKT 441 (1349)
Q Consensus 378 l~~~I~elea~i~eLeeELe~~~~~r~~l---e~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~ 441 (1349)
+..+|..++..+......|+.++...... ..+|.+++.++..+...+...|.+|..+..++.|.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~ 69 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKS 69 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 34566666777777777777766655432 34677788888888888888888888887777664
No 327
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.43 E-value=8.6e+02 Score=28.23 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000693 537 REFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1349)
Q Consensus 537 ~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1349)
--+..+..+.+..+.+++.++......+..++..+..|..+=-.|-.+++.|..=-
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34556677777777778888888888888888888888888777778888876544
No 328
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.42 E-value=1.9e+02 Score=32.38 Aligned_cols=99 Identities=20% Similarity=0.352 Sum_probs=57.3
Q ss_pred HHHHHHHhHHHHHhhhhHhhhhhhh-HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHHHhHHhhhhhhhHHHHHHhh--
Q 000693 255 EVEGQMASLQEELKGLNEKISEKEK-VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKA-- 331 (1349)
Q Consensus 255 ~~e~~~~~l~ee~~~~~e~~~k~~k-~ee~~~~~~~~l~~~ee~~~l~Ks~~~dlE~rl~~ee~~~~~~r~ele~~kr-- 331 (1349)
+.+-..-.|.-|++.|++++.+... .+.+.....++.+.+- .++|+=|.=.+....++.. ....-
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk----------~e~EqLL~YK~~ql~~~~~--~~~~~~~ 160 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVK----------REFEQLLDYKERQLRELEE--GRSKSGK 160 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHH----------HHHHHHHHHHHHHHHhhhc--cCCCCCC
Confidence 4445566788888888888888555 3333222223322222 2333333311110000110 11122
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q 000693 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIK 365 (1349)
Q Consensus 332 ~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~ 365 (1349)
.+..+.+++.-++.++.-|+.-|..|..||+.++
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788888888888888889999999999998764
No 329
>PRK10132 hypothetical protein; Provisional
Probab=24.90 E-value=62 Score=32.80 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHccCC
Q 000693 1334 VALVSVIIGITLGKR 1348 (1349)
Q Consensus 1334 ~~~~~~~~~~~~~~~ 1348 (1349)
.|.|.+|||++||+|
T Consensus 93 aagvG~llG~Ll~RR 107 (108)
T PRK10132 93 AAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHhcc
Confidence 445778999999988
No 330
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=24.63 E-value=9.1e+02 Score=26.07 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000693 714 AADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATS 793 (1349)
Q Consensus 714 ~e~~k~~LE~EieEl~~qLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~ 793 (1349)
+...+.+.+.+-..+....++++...+=.|-++.+...+++.+-++|..+|-.=..-+--.+...++..+...+-.....
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~ 133 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVT 133 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666667777777788899999999999888888777433222222334444444444444444444
Q ss_pred hhhhhhhhHH
Q 000693 794 RNSELESLHE 803 (1349)
Q Consensus 794 ~~~e~~~~~~ 803 (1349)
+-.+|++=.+
T Consensus 134 ~L~eLv~eSE 143 (159)
T PF04949_consen 134 RLMELVSESE 143 (159)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 331
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.60 E-value=8.9e+02 Score=27.18 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000693 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1349)
Q Consensus 533 erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1349)
+|.|..-..+...|+..+.-....-......-...+.....|..+....+.+++.|...+..|
T Consensus 118 eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 118 ERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333344444444444444444444444444333
No 332
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.43 E-value=1.2e+03 Score=27.38 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1229 AALKSSLEELGAKNKEAALLQNKVAELEQKLQQ 1261 (1349)
Q Consensus 1229 ~elk~le~ei~~le~ei~~lt~eIneLeqkL~d 1261 (1349)
..-..+..+|..-...|..+..+|..|...+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555544
No 333
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=24.40 E-value=7.6e+02 Score=27.91 Aligned_cols=146 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred hHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhh
Q 000693 357 KVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG-NIARMKELCSELEEKLRNSD 435 (1349)
Q Consensus 357 k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~-~~~el~~~l~~LEeeL~~~~ 435 (1349)
|...||.+.+-|+.-.-.+..++.+++. .|+.||+.++..-..-...-..... ....+...+-+-|+.|=+++
T Consensus 4 kv~~LQ~AL~~LQaa~ekRE~lE~rLR~------~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLE 77 (205)
T PF12240_consen 4 KVERLQQALAQLQAACEKREQLERRLRT------RLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALE 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHH----HHHHHHhhhhhhHHHH
Q 000693 436 ENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAE----EAKSQLRELEPRFIAA 511 (1349)
Q Consensus 436 ~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~E----k~k~~l~~l~~~~~~~ 511 (1349)
.+..|-|+ |-|++....+=+.-+.+.-.-......|..+...-. +.--.+-.......+.
T Consensus 78 ad~~kWEq----------------kYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qem 141 (205)
T PF12240_consen 78 ADMTKWEQ----------------KYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEM 141 (205)
T ss_pred HHHHHHHH----------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHH
Q 000693 512 EQRSVELEQQLNL 524 (1349)
Q Consensus 512 e~k~keLE~Ql~e 524 (1349)
+.+++.|+.+|.+
T Consensus 142 E~RIK~LhaqI~E 154 (205)
T PF12240_consen 142 ENRIKALHAQIAE 154 (205)
T ss_pred HHHHHHHHHHHHH
No 334
>PRK10404 hypothetical protein; Provisional
Probab=24.15 E-value=67 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=16.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHccCC
Q 000693 1321 DASPVMTFKFIIGVALVSVIIGITLGKR 1348 (1349)
Q Consensus 1321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1348 (1349)
.||..|.+ .|.|.+|||++||+|
T Consensus 79 ~Pw~avGi-----aagvGlllG~Ll~RR 101 (101)
T PRK10404 79 KPWQGIGV-----GAAVGLVLGLLLARR 101 (101)
T ss_pred CcHHHHHH-----HHHHHHHHHHHHhcC
Confidence 56665553 445778899999987
No 335
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=24.06 E-value=1.1e+03 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1209 AQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQK 1258 (1349)
Q Consensus 1209 l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneLeqk 1258 (1349)
+...+.+| ++-...- .....+|..+-.+...+......|..+-..|...
T Consensus 150 A~~~l~e~~~~i~~EN-~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 150 AKKSLDEFTRSIKREN-QQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 4444444 4555666666666666666666666555554443
No 336
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.95 E-value=6.5e+02 Score=24.13 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000693 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ--LHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1349)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLee--le~klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1349)
+.--+..+..++.++..--..+...+.++...|.....-... .-.... |..++..+...+..+..++..+......+
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444445555555555555555555444431111 112223 66666666666666666666666655543
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.94 E-value=1.3e+03 Score=28.72 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 496 EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLE 575 (1349)
Q Consensus 496 k~k~~l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LE 575 (1349)
+.++.+-.+...++..+++...+-.|+--+..-...+-..+...+..+.+|+.++..+..+.-.......-....+...+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 000693 576 LILNQSNTRSSELEEELRITKE 597 (1349)
Q Consensus 576 sqLk~LqsrireLEEele~L~E 597 (1349)
+..-.+..+++.+.+.......
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n 111 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFEN 111 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
No 338
>PRK00736 hypothetical protein; Provisional
Probab=23.88 E-value=4.4e+02 Score=24.55 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHh
Q 000693 570 KITQLELILNQSN 582 (1349)
Q Consensus 570 kIs~LEsqLk~Lq 582 (1349)
.|..|+.++..+.
T Consensus 34 ~i~~L~~ql~~L~ 46 (68)
T PRK00736 34 TVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 339
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=23.75 E-value=67 Score=27.67 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000693 1329 KFIIGVALVSVIIGITL 1345 (1349)
Q Consensus 1329 ~~~~~~~~~~~~~~~~~ 1345 (1349)
=+|||..|+-++|||--
T Consensus 7 ~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 7 LIILGALLLLLLIGICW 23 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37999999999999953
No 340
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.64 E-value=5.2e+02 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000693 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1349)
Q Consensus 559 ele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1349)
.+...+..+..++.+|...+..+...+....++......+|..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444444444443
No 341
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.53 E-value=1.5e+03 Score=28.24 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 000693 718 KRKLQDTS 725 (1349)
Q Consensus 718 k~~LE~Ei 725 (1349)
+..++..+
T Consensus 300 l~~~~~~l 307 (457)
T TIGR01000 300 LLELESKI 307 (457)
T ss_pred HHHHHHHH
Confidence 33333333
No 342
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.47 E-value=2.3e+03 Score=30.47 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=20.6
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHH
Q 000693 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAE 495 (1349)
Q Consensus 454 El~~~~k~lee~~~~~e~~~~~~~qk~~EL~~q~~~~~~~~E 495 (1349)
||..-+|..|+...-.+-++..+-|-...+--||+.+|-+.+
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555554444443
No 343
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=23.42 E-value=1.4e+03 Score=27.69 Aligned_cols=56 Identities=16% Similarity=0.001 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000693 831 SEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEAN 887 (1349)
Q Consensus 831 ~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~ele 887 (1349)
-+.-+++..++|.+|.+..-..+--.... +|...-..-+-++..|+.++.-.....
T Consensus 38 ~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~k 93 (391)
T KOG1850|consen 38 AELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTK 93 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888877655443333333 555555556666777777776555443
No 344
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.18 E-value=1.5e+03 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhHHHH
Q 000693 1160 FKEEVENVKVSAAGKEAELNSKLEDHAHEVK 1190 (1349)
Q Consensus 1160 l~eEIe~Lq~e~~~a~a~L~~~~~e~~~~e~ 1190 (1349)
+...+....|.+....+.+............
T Consensus 304 l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~ 334 (458)
T COG3206 304 LSTELGAKHPQLVALEAQLAELRQQIAAELR 334 (458)
T ss_pred HHHhhcccChHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444333
No 345
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.09 E-value=73 Score=30.96 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHccCC
Q 000693 1334 VALVSVIIGITLGKR 1348 (1349)
Q Consensus 1334 ~~~~~~~~~~~~~~~ 1348 (1349)
.|.|.++||++|++|
T Consensus 80 AagvG~llG~Ll~RR 94 (94)
T PF05957_consen 80 AAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHhCC
Confidence 344667899999987
No 346
>PRK00846 hypothetical protein; Provisional
Probab=23.04 E-value=5e+02 Score=24.99 Aligned_cols=22 Identities=5% Similarity=-0.071 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 000693 564 MNDYKDKITQLELILNQSNTRS 585 (1349)
Q Consensus 564 lee~q~kIs~LEsqLk~Lqsri 585 (1349)
+-..+..|..|..++..+..++
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 347
>PRK00523 hypothetical protein; Provisional
Probab=23.00 E-value=42 Score=31.55 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=9.5
Q ss_pred HHHHHHHHHHccCCC
Q 000693 1335 ALVSVIIGITLGKRY 1349 (1349)
Q Consensus 1335 ~~~~~~~~~~~~~~~ 1349 (1349)
.++.+++|+|+++||
T Consensus 15 li~G~~~Gffiark~ 29 (72)
T PRK00523 15 LIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666665
No 348
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.96 E-value=7.4e+02 Score=24.44 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1191 DRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAEL 1255 (1349)
Q Consensus 1191 ~~q~~~~~l~~~~~ql~~l~~aI~~y-~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIneL 1255 (1349)
........+..+..+-+.+...|... ..| ... .....+...+..+|..++..+..+..+++.+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~-~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAG-EDA-EELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666777777777 433 334 4456666777777777777766666666554
No 349
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.85 E-value=1.4e+03 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 654 QISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVAL 697 (1349)
Q Consensus 654 qis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L 697 (1349)
.+..++.|.+...-..+++-+..+.+.=+++.+...+-+++..+
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~ 128 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETL 128 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333333444444444444333
No 350
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.70 E-value=4.1e+02 Score=33.52 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhH---hhhHHHHHHHHHhcccch-hhhhHHHHH
Q 000693 759 DLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMR---ESEMKLQDALANITSRDS-EAKSFSEKL 834 (1349)
Q Consensus 759 ~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~k---k~E~~L~eal~~~~~~~~-E~~~l~k~L 834 (1349)
++.+.|+.-.-..++++-+.-+++.+...+....+....+..=++++++ .+..+++.+++.....-. +...|...+
T Consensus 46 e~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 46 ELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred hhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000693 835 KNLEGQVKMYEEQLAE 850 (1349)
Q Consensus 835 ~~lq~qik~~q~~~~e 850 (1349)
..+++++-+++++++.
T Consensus 126 ~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 126 QQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHhh
No 351
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.57 E-value=1.6e+02 Score=25.29 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Q 000693 871 SLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSK 910 (1349)
Q Consensus 871 ~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLesk 910 (1349)
++|+....|....+.+......+..++..+..++..|...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666667777766666666655555555555555555443
No 352
>PRK01844 hypothetical protein; Provisional
Probab=22.53 E-value=42 Score=31.57 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcc
Q 000693 1326 MTFKFIIGVALVSVIIGITLG 1346 (1349)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~ 1346 (1349)
|+.=+++++.+|.+|+|+++|
T Consensus 1 M~~~~~I~l~I~~li~G~~~G 21 (72)
T PRK01844 1 MPIWLGILVGVVALVAGVALG 21 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 334466778889999999988
No 353
>PRK13734 conjugal transfer pilin subunit TraA; Provisional
Probab=22.39 E-value=49 Score=33.33 Aligned_cols=18 Identities=39% Similarity=0.757 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000693 1327 TFKFIIGVALVSVIIGIT 1344 (1349)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~ 1344 (1349)
++||.+|+|+|||++-|-
T Consensus 97 Nl~~L~G~aiv~VF~~VG 114 (120)
T PRK13734 97 NVKFLAGFAIISVFIAVG 114 (120)
T ss_pred hHHHHHhhHHhhhhhccc
Confidence 589999999999998663
No 354
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=22.36 E-value=53 Score=29.55 Aligned_cols=15 Identities=47% Similarity=0.857 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcc
Q 000693 1332 IGVALVSVIIGITLG 1346 (1349)
Q Consensus 1332 ~~~~~~~~~~~~~~~ 1346 (1349)
||-|+.|+++||+||
T Consensus 5 l~pa~aSaV~Gi~lG 19 (56)
T PF11021_consen 5 LGPAAASAVVGIVLG 19 (56)
T ss_pred hhHHHHHHHHHHHHH
Confidence 567888999999887
No 355
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.32 E-value=3.2e+02 Score=30.65 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHH
Q 000693 826 EAKSFSEKLKNLEGQVKMYEEQLAE----AAGKYALLKEELDSYFI 867 (1349)
Q Consensus 826 E~~~l~k~L~~lq~qik~~q~~~~e----a~~k~~~l~~Ele~~~~ 867 (1349)
|...|-++|..|+..|...+..+.. ..-++..++.|+++|+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 6667889999999999998888887 23567888999999887
No 356
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.18 E-value=2.1e+03 Score=29.54 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHH--HHHHHHHHH----HHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhh
Q 000693 965 IQLHEAIQRFTQRDIEANNLNEKV--SVLEGQIKS----YEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSG 1038 (1349)
Q Consensus 965 ~~l~e~~~~~~~~~~~~~~l~~~~--~~l~~~i~~----~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~ 1038 (1349)
.+|+--|+.+++. .++| ..+.-.++. ++-+..+-++.=+.-.++|+....+..+...-+ .+...-.
T Consensus 717 ~~l~~~lq~~~~~-------~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~-~LeVne~ 788 (980)
T KOG0980|consen 717 MLLRQYLQTLNQL-------GEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGV-RLEVNES 788 (980)
T ss_pred HHHHHHHHHHHHH-------hHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-eeeccHH
Confidence 3777778875554 4444 223333332 333344433333444456665555544422211 1211111
Q ss_pred hhHhhhhchHHHHHhHHHHHHHHHHhH
Q 000693 1039 HFERESGGLVETNLKLTEDLALYETKL 1065 (1349)
Q Consensus 1039 ~~EseLrk~v~~i~rL~~EI~~le~qi 1065 (1349)
-+-. ...+++.|..|-.-...++++|
T Consensus 789 iL~~-ct~lm~aI~~Lv~as~~lQ~EI 814 (980)
T KOG0980|consen 789 ILSA-CTALMEAIMALVKASRELQTEI 814 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3445555555555555555544
No 357
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.13 E-value=5e+02 Score=33.03 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 000693 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1349)
Q Consensus 388 ~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~ 435 (1349)
.+.++..-+.-.......+...+.+++..+.+++..+..|+.+|..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555666666666666666666666666666666665543
No 358
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.10 E-value=1.2e+03 Score=26.70 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=76.7
Q ss_pred hhhhhHHHHHhhhhhhHhhhhchHHHHHhHHHHHHHHHHhHHHHHH---HhhhhhcccccCHHHHHHHHHHHHHHHHHHH
Q 000693 1025 NLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQA---KLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1349)
Q Consensus 1025 ~~e~~v~elk~k~~~~EseLrk~v~~i~rL~~EI~~le~qi~dL~~---eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lr 1101 (1349)
+.|.-+.+.+.-++.++..|+++...+..+..-=+++-.-+.++.. .|+ ..+...++...=.....+.+.++.+-
T Consensus 19 E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~--~~E~~~~ls~~l~~laev~~ki~~~~ 96 (234)
T cd07664 19 ESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLG--NSEDHTALSRALSQLAEVEEKIDQLH 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655555555444444444444444 444 22333355555555555556666553
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhHh
Q 000693 1102 SEV-QGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQ--------FKEEVENVKVSAA 1172 (1349)
Q Consensus 1102 kei-~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~--------l~eEIe~Lq~e~~ 1172 (1349)
... ...........+++-++.+.|+.-+..=-+-+..-.+.+..+...+.....+... +..+|..+.....
T Consensus 97 ~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~ 176 (234)
T cd07664 97 QDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQ 176 (234)
T ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Confidence 322 2222223334555555555553333332233333334444444444443333211 3444444444444
Q ss_pred hHHHHHHHHHHhhhHHHHH
Q 000693 1173 GKEAELNSKLEDHAHEVKD 1191 (1349)
Q Consensus 1173 ~a~a~L~~~~~e~~~~e~~ 1191 (1349)
.+...++.+..........
T Consensus 177 ~a~~~fe~Is~~~k~El~r 195 (234)
T cd07664 177 QGERDFEQISKTIRKEVGR 195 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 359
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=1.2e+03 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.500 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 811 MKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA 852 (1349)
Q Consensus 811 ~~L~eal~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~ 852 (1349)
-.|++++++.|++-+-+. ++..+|..++--|..++.-.|
T Consensus 15 psL~dai~~v~~r~dSve---~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVE---KKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred hhHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 358899999998877666 999999999999999998877
No 360
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.91 E-value=2.7e+02 Score=35.07 Aligned_cols=54 Identities=11% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 000693 379 EAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLR 432 (1349)
Q Consensus 379 ~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~ 432 (1349)
+..+.+.+....+|+..|+.++.+...+.+.+.+++..+.+++..+..|..++.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777778888888877777777777777764
No 361
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.85 E-value=7.7e+02 Score=25.98 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHH
Q 000693 829 SFSEKLKNLEGQVKMYEEQLAEAA----------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE 898 (1349)
Q Consensus 829 ~l~k~L~~lq~qik~~q~~~~ea~----------~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele 898 (1349)
++|.| |+-||..++..+.-++ +....|-. +.+-..|.++|+....|++.+.+++..++.=....-
T Consensus 15 E~N~Q---Lekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~--~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyh 89 (129)
T PF15372_consen 15 ELNDQ---LEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV--ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYH 89 (129)
T ss_pred HHHHH---HHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHH
Q 000693 899 LLVETNNQLKSKVAEL 914 (1349)
Q Consensus 899 ~l~~e~~kLeski~~L 914 (1349)
....+-+.+-+.+.++
T Consensus 90 k~ndeRr~ylaEi~~~ 105 (129)
T PF15372_consen 90 KANDERRQYLAEISQT 105 (129)
T ss_pred HHhHHHHHHHHHHHhh
No 362
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.74 E-value=2.3e+03 Score=29.72 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 634 VNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNA 713 (1349)
Q Consensus 634 leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~reL~eqlee 713 (1349)
+.+.....+..+..+..+...+..++.+...++.+..++..+++....++......+..+-..+.........+...+..
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555666666666666666666666666666777777666666666666555555555555555555555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000693 714 AADEKRKLQDTSNGYNEKLAEAENLLE 740 (1349)
Q Consensus 714 ~e~~k~~LE~EieEl~~qLeElE~~Le 740 (1349)
+...-...+..+...+.-+..+++.|.
T Consensus 330 lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 330 LKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555555555556666665554
No 363
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=21.69 E-value=1.1e+03 Score=26.19 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 000693 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANM 608 (1349)
Q Consensus 529 ~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r~k~ 608 (1349)
+..++.++.+....+......|..-+........-.......+..|..-++.....+.....-......++.+...-+..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444455555555555555555555555555555553333333
Q ss_pred hhhhhHHHHHhHHh
Q 000693 609 SHQRSIELEDLFQT 622 (1349)
Q Consensus 609 ~rqrs~eLeell~~ 622 (1349)
.+.|...|...+..
T Consensus 149 Ak~Rve~L~~QL~~ 162 (188)
T PF05335_consen 149 AKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334333333
No 364
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=1.8e+03 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 000693 630 TGKRVNELELLLEAEKYRIQ----ELEEQISKLEKKC 662 (1349)
Q Consensus 630 ~~~~leelEe~LE~~K~Rlq----ELEeqis~LEKK~ 662 (1349)
+...++.+...+++.+.+.. ....-++++.|+.
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~ 703 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPT 703 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 34444444444444433332 4444444444444
No 365
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.43 E-value=6.8e+02 Score=26.93 Aligned_cols=29 Identities=0% Similarity=0.313 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000693 513 QRSVELEQQLNLVELKSSDSEREVREFSE 541 (1349)
Q Consensus 513 ~k~keLE~Ql~elq~K~~e~erei~elee 541 (1349)
.++..+..++..+..++.+...+|..|..
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
No 366
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.40 E-value=2.2e+02 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 000693 961 KEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQI 995 (1349)
Q Consensus 961 ~e~~~~l~e~~~~~~~~~~~~~~l~~~~~~l~~~i 995 (1349)
..-.++...++++++++ .-++..+|.+||++|
T Consensus 15 v~FQ~~v~~~lq~Lt~k---L~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQK---LDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc
Confidence 44556778889998887 778888888888876
No 367
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.40 E-value=3.8e+02 Score=29.39 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred hhchHHHHHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000693 1044 SGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQ 1110 (1349)
Q Consensus 1044 Lrk~v~~i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~e 1110 (1349)
|..+=.+|++|..-+.++...+....+++- +-.+..|.+++|..++.+....+.-+..+..+.+-
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik--~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIK--ELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666555555555555553 33366788999998888888777777776666554
No 368
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.36 E-value=9e+02 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000693 1086 LHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETF 1125 (1349)
Q Consensus 1086 LQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~i 1125 (1349)
|+...+..-..+..++..++.+..++......++..+..+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~ 44 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKAL 44 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666666555555544443
No 369
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.24 E-value=1.4e+03 Score=26.97 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Q 000693 827 AKSFSEKLKNLEGQVKMYEEQLAEAA--------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1349)
Q Consensus 827 ~~~l~k~L~~lq~qik~~q~~~~ea~--------------~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~ 891 (1349)
+..|++-=|.|+.-|+..+.++.-.+ .|+.-.++|+++++-.|+++.+-+|..=.+....++++.
T Consensus 100 plel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLq 178 (338)
T KOG3647|consen 100 PLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQ 178 (338)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44555666677777777776655544 677788999999999999999999998888777776543
No 370
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=21.20 E-value=4.3e+02 Score=27.77 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1129 IESLKAQAAEKFALETRIKELEELLVNVETQ 1159 (1349)
Q Consensus 1129 I~~le~~L~~K~nLe~~Iee~e~~i~~le~~ 1159 (1349)
-..+..-+.++..++..+..+-.....++.-
T Consensus 40 ~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~ 70 (171)
T PF03357_consen 40 KERAKIYLKRKKRLEKQLEKLLNQLSNLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444444333
No 371
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.17 E-value=7.5e+02 Score=23.86 Aligned_cols=76 Identities=17% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000693 1092 AIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSA 1171 (1349)
Q Consensus 1092 ~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ik~~I~~le~~L~~K~nLe~~Iee~e~~i~~le~~l~eEIe~Lq~e~ 1171 (1349)
.+++.+..+|.+...+..+.......-..++..|...|.++ ..|...|-+++..-..+...+..+|..|...+
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em-------~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEM-------QQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhH
Q 000693 1172 AGK 1174 (1349)
Q Consensus 1172 ~~a 1174 (1349)
...
T Consensus 74 e~r 76 (79)
T PF08581_consen 74 EQR 76 (79)
T ss_dssp CHH
T ss_pred Hhh
No 372
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.09 E-value=3.1e+02 Score=24.77 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=19.6
Q ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 000693 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1349)
Q Consensus 377 ~l~~~I~elea~i~eLeeELe~~~~~r~~le~~~~DL 413 (1349)
.++.+++.+.+.+..++.++..++.....++..+.|+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444
No 373
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.00 E-value=5.7e+02 Score=25.69 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 515 SVELEQQLNLVELKSSDSEREVREF--SEKLSQLSTALKEVEEEKKQLHDQM 564 (1349)
Q Consensus 515 ~keLE~Ql~elq~K~~e~erei~el--eekiskLq~EL~elE~eLeele~kl 564 (1349)
...+.+.+.....+++.++..+..+ ...+..++..+.++.+.+..+..++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444444444444444 4444444444444444333333333
No 374
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.88 E-value=2.1e+03 Score=29.05 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHH----------HHHHHHhhhhhHHHHHhhhhhhHhhhhchHHHHH
Q 000693 983 NLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEE----------TLLKLKNLESTVEELQTRSGHFERESGGLVETNL 1052 (1349)
Q Consensus 983 ~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~----------~~~kLe~~e~~v~elk~k~~~~EseLrk~v~~i~ 1052 (1349)
.|.+||+.|...+.-- -+.+-+..+.+++.|+.. .+.+++...+.|......... .--..+...|.
T Consensus 532 ~lk~Kle~Lk~~~~~~--~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~--~~~~~lkeki~ 607 (762)
T PLN03229 532 SLKYKLDMLNEFSRAK--ALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGD--ELDDDLKEKVE 607 (762)
T ss_pred HHHHHHHHHHHHHHhh--hhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccC--CCCHHHHHHHH
Confidence 4567777777665311 022322235555555543 333333333433332222222 21245667777
Q ss_pred hHHHHHH
Q 000693 1053 KLTEDLA 1059 (1349)
Q Consensus 1053 rL~~EI~ 1059 (1349)
++++||.
T Consensus 608 ~~~~Ei~ 614 (762)
T PLN03229 608 KMKKEIE 614 (762)
T ss_pred HHHHHHH
Confidence 7777765
No 375
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.85 E-value=9.7e+02 Score=25.02 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=54.2
Q ss_pred HHhHHHHHHHHHHhHHHHHHHhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 1051 NLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIE 1130 (1349)
Q Consensus 1051 i~rL~~EI~~le~qi~dL~~eLs~~s~g~~~TveELQ~~q~~~ne~ir~Lrkei~~Lq~eke~k~~eis~LE~~ik~~I~ 1130 (1349)
...+..++......++.+...+. ..+...|.++.+..+..+....+.++...+.++.+..... +.+.+.|..+|.
T Consensus 45 ~~~~~~~l~~~~~el~~~~~~l~--~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~---~~~~~~i~~~i~ 119 (158)
T PF03938_consen 45 FKALQKELQAKQKELQKLQQKLQ--SQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEE---QELLQPIQKKIN 119 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44556667777777777777776 6677889999999999999888888888888887755554 224444444455
Q ss_pred HHHHHHHH
Q 000693 1131 SLKAQAAE 1138 (1349)
Q Consensus 1131 ~le~~L~~ 1138 (1349)
.+-..+++
T Consensus 120 ~~v~~~a~ 127 (158)
T PF03938_consen 120 KAVEEYAK 127 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 376
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.70 E-value=49 Score=32.58 Aligned_cols=12 Identities=67% Similarity=1.110 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcc
Q 000693 1335 ALVSVIIGITLG 1346 (1349)
Q Consensus 1335 ~~~~~~~~~~~~ 1346 (1349)
-+||++||++||
T Consensus 37 PlIs~viGilLG 48 (93)
T PF06946_consen 37 PLISVVIGILLG 48 (93)
T ss_pred hHHHHHHHHHHH
Confidence 478999999988
No 377
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.64 E-value=1.4e+03 Score=26.90 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=8.7
Q ss_pred hhHHHHHHhccch
Q 000693 468 ETGAAAATASQRN 480 (1349)
Q Consensus 468 ~~e~~~~~~~qk~ 480 (1349)
-|++-|++-+=++
T Consensus 108 KHGDIAsNc~lkS 120 (269)
T PF05278_consen 108 KHGDIASNCKLKS 120 (269)
T ss_pred hCccHhhccccCc
Confidence 4777777766665
No 378
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.62 E-value=1.6e+02 Score=30.95 Aligned_cols=49 Identities=10% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 526 ELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQL 574 (1349)
Q Consensus 526 q~K~~e~erei~eleekiskLq~EL~elE~eLeele~klee~q~kIs~L 574 (1349)
...+.+...-+..++..+.+|+.++..++.++..+..++.+....-..|
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444455555555555555554444444444444333
No 379
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=20.54 E-value=2.1e+03 Score=28.86 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 482 ELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSV---ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKK 558 (1349)
Q Consensus 482 EL~~q~~~~~~~~Ek~k~~l~~l~~~~~~~e~k~k---eLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLe 558 (1349)
.+...+...+...+..-..+...+..+..+++... .+...+..+...+......+..+...+..++..+..+.....
T Consensus 186 ~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~ 265 (670)
T KOG0239|consen 186 DLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVS 265 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHhhHHHHhhh
Q 000693 559 QLHDQMNDYKDKITQLELILNQSNTRSSELE---EELRITKERSAEDEDRANM 608 (1349)
Q Consensus 559 ele~klee~q~kIs~LEsqLk~LqsrireLE---Eele~L~EeLeE~e~r~k~ 608 (1349)
.+...+.+....+..+...+......+..-. .....|..++.++.+-+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 266 LLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceE
No 380
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=20.49 E-value=1.1e+03 Score=30.43 Aligned_cols=121 Identities=24% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhcchhhHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHhHHhhhHHHHHHHH
Q 000693 889 KANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLH 968 (1349)
Q Consensus 889 e~~~L~sele~l~~e~~kLeski~~LEseL~~~vsei~~l~eEik~le~qIe~Ls~els~~~~~~~~~~~~~~e~~~~l~ 968 (1349)
++.+|.-++..+..++..|.--..+|-......-.+..-+..+ .
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgE------------------------------------l 345 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGE------------------------------------L 345 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhH------------------------------------H
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhhHHHHHhhhhhhHhhhhchH
Q 000693 969 EAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLV 1048 (1349)
Q Consensus 969 e~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ee~~~~~~~~~~~~~~~~e~~~~kLe~~e~~v~elk~k~~~~EseLrk~v 1048 (1349)
+|.+.++.| ||.+|..+||.++- .|++.+++..+....+..-=-+.-.+++--.++.+..
T Consensus 346 ea~kqak~K-------------lee~i~elEEElk~-------~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVL 405 (832)
T KOG2077|consen 346 EAVKQAKLK-------------LEEKIRELEEELKK-------AKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVL 405 (832)
T ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHH-------HHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHhH
Q 000693 1049 ETNLKLTEDLALYETKL 1065 (1349)
Q Consensus 1049 ~~i~rL~~EI~~le~qi 1065 (1349)
-+-..|..-+..|+--|
T Consensus 406 MeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 406 MERNQYKERLMELQEAV 422 (832)
T ss_pred HHHhHHHHHHHHHHHHH
No 381
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=20.38 E-value=85 Score=24.53 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHccCC
Q 000693 1328 FKFIIGVALVSVIIGITLGKR 1348 (1349)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~ 1348 (1349)
+=+++|++++++ .|+++.+|
T Consensus 12 ~~~~~G~~l~~~-~~~~~~~r 31 (34)
T TIGR01167 12 LLLLLGLLLLGL-GGLLLRKR 31 (34)
T ss_pred HHHHHHHHHHHH-HHHHheec
Confidence 345678866655 66666654
No 382
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.25 E-value=1.8e+03 Score=27.83 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHhhHHHHHHHHH-----HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000693 488 RASNEAAEEAKSQ-----LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD 562 (1349)
Q Consensus 488 ~~~~~~~Ek~k~~-----l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~eleekiskLq~EL~elE~eLeele~ 562 (1349)
+.-++=++..+++ ...+...+....+.-..|.+++..+...-.+...++.++..+-.++..+-..+-+++.....
T Consensus 160 ~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~ 239 (447)
T KOG2751|consen 160 DTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQR 239 (447)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 45566666677777777888888888777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000693 563 QMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1349)
Q Consensus 563 klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1349)
.....+..+.+++.++.....+..-|....
T Consensus 240 q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 240 QLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777777777666665555554433
No 383
>PRK00523 hypothetical protein; Provisional
Probab=20.14 E-value=74 Score=30.00 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHcc
Q 000693 1328 FKFIIGVALVSVIIGITLG 1346 (1349)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~ 1346 (1349)
.=+++|+.++.+|+|+++|
T Consensus 4 ~~l~I~l~i~~li~G~~~G 22 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIG 22 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888899999887
Done!