Query 000693
Match_columns 1349
No_of_seqs 327 out of 385
Neff 5.6
Searched_HMMs 13730
Date Tue Mar 26 17:03:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000693.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_464-468//hhsearch_scop/000693hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i4da_ a.238.1.2 (A:) Arfapti 6.6 50 0.0036 3.3 21.5 22 1199-1220 173-195 (200)
2 d2elba1 a.238.1.1 (A:6-273) DC 4.2 88 0.0064 1.2 25.1 46 1027-1072 15-60 (268)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 1.8 2.4E+02 0.018 -2.4 3.0 26 1044-1069 28-53 (61)
4 d1v54d_ f.23.1.1 (D:) Mitochon 1.8 2.5E+02 0.018 -2.5 2.6 17 1329-1345 76-92 (144)
5 d1uuja_ a.221.1.1 (A:) Lissenc 1.7 2.5E+02 0.018 -2.6 1.3 26 1044-1069 50-75 (76)
6 d1lvfa_ a.47.2.1 (A:) Syntaxin 1.7 2.5E+02 0.018 -2.6 6.1 96 818-927 2-101 (106)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 1.6 2.8E+02 0.021 -3.0 5.3 67 1193-1260 10-78 (79)
8 d1lrza1 a.2.7.4 (A:245-309) Me 1.5 3E+02 0.022 -3.3 7.3 61 518-593 1-61 (65)
9 d1gqea_ e.38.1.1 (A:) Polypept 1.5 3E+02 0.022 -3.3 12.8 100 1142-1242 4-111 (362)
10 d1eq1a_ a.63.1.1 (A:) Apolipop 1.4 3.2E+02 0.023 -3.4 5.0 152 368-532 9-162 (166)
No 1
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.56 E-value=50 Score=3.30 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 999999999999999984-0781
Q 000693 1199 VIQLQRELQIAQTAIAEQ-RGAD 1220 (1349)
Q Consensus 1199 l~~~~~ql~~l~~~I~~y-~~g~ 1220 (1349)
+....+.|....++...| .++.
T Consensus 173 ~~~~~~~l~~~~~~~~~f~~~~~ 195 (200)
T d1i4da_ 173 IKVMHKQLLLFHNAVSAYFAGNQ 195 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999
No 2
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.16 E-value=88 Score=1.22 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6459999733544686422029998858989999997689899973
Q 000693 1027 ESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKL 1072 (1349)
Q Consensus 1027 e~~v~elk~k~~~~EseLrk~V~~isrL~~EI~~le~qi~dL~~eL 1072 (1349)
.+.+..+....+.++.-+.+++.....|..-...+..-...+..-|
T Consensus 15 Ra~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L 60 (268)
T d2elba1 15 RSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLL 60 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.81 E-value=2.4e+02 Score=-2.44 Aligned_cols=26 Identities=8% Similarity=-0.148 Sum_probs=9.9
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22029998858989999997689899
Q 000693 1044 SGGLVETNLKLTEDLALYETKLSDLQ 1069 (1349)
Q Consensus 1044 Lrk~V~~isrL~~EI~~le~qi~dL~ 1069 (1349)
|...+..|-.|..++..+..+...|.
T Consensus 28 L~~Ai~YI~~Lq~~~~~L~~e~~~L~ 53 (61)
T d1uklc_ 28 LRKAIDYIKYLQQVNHKLRQENMVLK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.78 E-value=2.5e+02 Score=-2.51 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999998871
Q 000693 1329 KFIIGVALVSVIIGITL 1345 (1349)
Q Consensus 1329 ~~~~~~~~~~~~~~~~~ 1345 (1349)
|.|+|++++.|-||+.+
T Consensus 76 K~v~g~~~~~i~~s~~i 92 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALL 92 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 67899999999999999
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.74 E-value=2.5e+02 Score=-2.60 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22029998858989999997689899
Q 000693 1044 SGGLVETNLKLTEDLALYETKLSDLQ 1069 (1349)
Q Consensus 1044 Lrk~V~~isrL~~EI~~le~qi~dL~ 1069 (1349)
|.+.=..++||.+-|.++++++..++
T Consensus 50 LEKKWtSViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 50 LEKKWTSVIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12589989999999999999999861
No 6
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.74 E-value=2.5e+02 Score=-2.62 Aligned_cols=96 Identities=8% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 87005523544589978989999999999999999----79866899999899998645551298889999999764020
Q 000693 818 ANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA----GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNS 893 (1349)
Q Consensus 818 ~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~----~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L 893 (1349)
|-|.-...|++ +.+.++++-...|.+....+. ..+..+..||. +.+..++-.+.++..-+.-.
T Consensus 2 DPF~~v~~EVq---~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~----------~~l~siewdL~dLe~av~~v 68 (106)
T d1lvfa_ 2 DPFFVVKGEVQ---KAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELR----------NNLRSIEWDLEDLDETISIV 68 (106)
T ss_dssp CHHHHHHHHHH---HHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_conf 98389999999---999999999999999762577888277999999999----------99999996899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3337789999998888699999996378999999
Q 000693 894 SSENELLVETNNQLKSKVAELQELLDSAISEKEA 927 (1349)
Q Consensus 894 ~sele~l~~e~~kLeski~~LEseL~~~vsEi~~ 927 (1349)
...-....-....+..++..+.. ++..+..+..
T Consensus 69 e~np~kf~l~~~ei~~Rr~fi~~-~~~~I~~~~~ 101 (106)
T d1lvfa_ 69 EANPRKFNLDATELSIRKAFITS-TRQIVRDMKD 101 (106)
T ss_dssp HSSGGGGTCCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHCHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 84977349999999999999999-9999999999
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.58 E-value=2.8e+02 Score=-3.02 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999999999984--07812148999999999999998789999899999999999999
Q 000693 1193 NALYEQVIQLQRELQIAQTAIAEQ--RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQ 1260 (1349)
Q Consensus 1193 q~~~~~l~~~~~ql~~l~~~I~~y--~~g~~qL~~e~e~elk~le~ei~~le~ei~~lt~eIn~LeqkL~ 1260 (1349)
+...+.|+.....|..+--...+- ..-.+.| ..-...|..+...+..+..++..+..++..|.++|.
T Consensus 10 r~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL-~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 10 KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLL-TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999989999999767567787878899999-999999999999999999999999999999998764
No 8
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=1.49 E-value=3e+02 Score=-3.27 Aligned_cols=61 Identities=7% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987621279999999898999999999999999999997999999999999999999599899999999
Q 000693 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1349)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eleekiskLk~EL~elE~eLeele~klee~q~kIs~LEsqLk~LqsrireLEEel~ 593 (1349)
+...+..++.+...+..+|..+...+.+.-.. .....+...|.+++..+..|+....+-..
T Consensus 1 F~eYl~~L~~~~~~L~~~i~k~~~~leknP~s---------------kK~~nk~~el~~Q~~s~~~ki~Ea~~li~ 61 (65)
T d1lrza1 1 FDEYIKELNEERDILNKDLNKALKDIEKRPEN---------------KKAHNKRDNLQQQLDANEQKIEEGKRLQE 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95778988999999999999999999878895---------------78887888899999999999999999998
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=1.49 E-value=3e+02 Score=-3.28 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999-----9999984332286589988789986-5688998989899999999999999999998
Q 000693 1142 LETRIKELEELLVNVETQ-----FKEEVENVKVSAAGKEAELNSKLED-HAHEVKDRNALYEQVIQLQRELQIAQTAIAE 1215 (1349)
Q Consensus 1142 Le~~Iee~e~~i~~le~~-----l~eEIe~Lq~ei~~a~a~L~~~~~e-~~~~e~~~q~~~~~l~~~~~ql~~l~~~I~~ 1215 (1349)
|.++|.++++.+..++.. ....+..|......-.---+..... ...+...+...++.+..+...+..+...+.-
T Consensus 4 l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~El 83 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLEL 83 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999997769798999999999986397144499999999999999999999999999999988877877
Q ss_pred H--HCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4--07812148999999999999998789
Q 000693 1216 Q--RGADSQKDSEREAALKSSLEELGAKN 1242 (1349)
Q Consensus 1216 y--~~g~~qL~~e~e~elk~le~ei~~le 1242 (1349)
. .....-. .++...+..+...+..++
T Consensus 84 a~ee~deel~-~e~~~~l~~l~~~l~~le 111 (362)
T d1gqea_ 84 AVEADDEETF-NEAVAELDALEEKLAQLE 111 (362)
T ss_dssp HHHHTCHHHH-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 6411058888-889999999862246778
No 10
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=1.44 E-value=3.2e+02 Score=-3.42 Aligned_cols=152 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69988747879999886599998699999999999999999999855549999988799999974456643223324456
Q 000693 368 LQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQ 447 (1349)
Q Consensus 368 ~eee~~~~~~l~~~I~elea~i~eLqeELe~~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~ 447 (1349)
+.+--..-..+...|.++-..+...+.-...-..-.........++.. -...+-..+.+..+......+.+..
T Consensus 9 ~~~~~~~a~e~~~t~~eq~~~~~n~knt~~~~~a~ke~a~~v~e~~~~---~~~~l~~~~~Ea~~~a~dav~qa~~---- 81 (166)
T d1eq1a_ 9 FEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSA---FSSSLQGAISDANGKAKEALEQARQ---- 81 (166)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHHHH---HHHHHHHHHTTCSSTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 567999999988429999999886253999889889877889999999---9999998888888789999998778----
Q ss_pred HHHCHHHHHHHHHCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 421158999987409987430388899800140-8889999982688999898784561568-89989989999999999
Q 000693 448 ALANNAELELKLKSLEEQHNETGAAAATASQRN-LELEDIIRASNEAAEEAKSQLRELEPRF-IAAEQRSVELEQQLNLV 525 (1349)
Q Consensus 448 ~~~~~~El~~~~k~lee~~~~~e~~~~~~~qk~-~EL~~q~~~~~~~~Ek~k~~l~~l~~~~-~~~e~k~keLE~Ql~el 525 (1349)
.++..-..|...+-.|+..+..++..- .+.-..++.+..-.-..-..|.+....+ .....-+..+..+.+++
T Consensus 82 ------nle~~Aeelrk~~e~ikq~a~d~~~~~~~~~~~~vqe~~~~ake~~~~l~E~n~kl~~~~K~~~~e~~kq~~ev 155 (166)
T d1eq1a_ 82 ------NVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEV 155 (166)
T ss_dssp ------HHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------99999999988159999999999988789999999999888888888999999997788888999999999999
Q ss_pred HHHHHHH
Q ss_conf 8762127
Q 000693 526 ELKSSDS 532 (1349)
Q Consensus 526 q~K~~e~ 532 (1349)
+.++.+.
T Consensus 156 q~r~~eA 162 (166)
T d1eq1a_ 156 QKKLHEA 162 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9998744
Done!