BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000694
(1349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L +G D I++WDI+ + +++ ++ H + + S F G+ L+SGS D+T+ +W +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 1141 VQRKLEL---IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDS 1181
+ L IE T + D GK I A + ++V DS
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAVRVWDS 236
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKE-------HRKAVTSFSLFEPGESLLSGSADKT 1134
+ +G D ++++WD ++ LV + H+ +V S G+S++SGS D++
Sbjct: 222 IAAGSLDRAVRVWD--SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 1135 IGVWQM 1140
+ +W +
Sbjct: 280 VKLWNL 285
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1074 ALIYYKGLLCSGFSDGSIKMWDIKKQSAMLV--WDVKEHRKAVTSFSLFEPGESLLSGSA 1131
A + KG+L + S G++++W+I ++ ++LV + EH V + S+F G +SG
Sbjct: 101 AWVSEKGILVASDS-GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159
Query: 1132 DKTIGVWQMVQRKL 1145
D ++ VW + Q+ +
Sbjct: 160 DFSVKVWDLSQKAV 173
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 1070 GAVTALIY-YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG--ESL 1126
G V AL Y + G+L SG +D ++++WDIKK V++ H V + E + +
Sbjct: 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYI 220
Query: 1127 LSGSADKTIGVWQM 1140
++GS D T+ VW++
Sbjct: 221 VTGSRDNTLHVWKL 234
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L S +DGSI+ WD S + H +++ + F +++L ++ ++ +
Sbjct: 364 FLVSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFYVSDNILVSGSENQFNIYNL 419
Query: 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQ 1172
KL ++ + I ++ GKT+ A+ +
Sbjct: 420 RSGKLVHANILKDADQIWSVNFKGKTLVAAVE 451
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 1070 GAVTALIY-YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG--ESL 1126
G V AL Y + G+L SG +D ++++WDIKK V++ H V + E + +
Sbjct: 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYI 220
Query: 1127 LSGSADKTIGVWQM 1140
++GS D T+ VW++
Sbjct: 221 VTGSRDNTLHVWKL 234
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L S +DGSI+ WD S + H +++ + F +++L ++ ++ +
Sbjct: 364 FLVSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFYVSDNILVSGSENQFNIYNL 419
Query: 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQ 1172
KL ++ + I ++ GKT+ A+ +
Sbjct: 420 RSGKLVHANILKDADQIWSVNFKGKTLVAAVE 451
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1070 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLS 1128
G V +L + G++ SG D + K+W + LV++++ H +V + E+ L+
Sbjct: 105 GNVCSLSFQDGVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 1129 GSADKTIGVWQ 1139
SADKTI +WQ
Sbjct: 161 ASADKTIKLWQ 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1072 VTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 1129
V ++++ G + S D ++++WD K + M + EH VTS + +++G
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTG 398
Query: 1130 SADKTIGVWQ 1139
S D+T+ VW+
Sbjct: 399 SVDQTVKVWE 408
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
LL S +D +IK+WD Q + + H V+S S+ G+ ++S S DKTI +W++
Sbjct: 164 LLASCSADMTIKLWDF--QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L SG D +IKMWD+ + M + + H V G+ +LS + DKT+ VW
Sbjct: 310 FLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 1141 VQRK 1144
++
Sbjct: 368 KNKR 371
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1072 VTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 1129
VT +I++ ++ S D +IK+WD ++ +K H +V S G+ L S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASC 168
Query: 1130 SADKTIGVWQM 1140
SAD TI +W
Sbjct: 169 SADMTIKLWDF 179
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 25/122 (20%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAV--------TSFSLF------------ 1120
L+ S +D ++++W + + +++EHR V +S+S
Sbjct: 248 LIASCSNDQTVRVWVVATKECKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 1121 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKV 1178
+PG LLSGS DKTI +W V + L+ ++ +R + GK I + ++V
Sbjct: 306 KPGPFLLSGSRDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 1179 ID 1180
D
Sbjct: 365 WD 366
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
+ S D +IKMW++ Q+ V HR+ V + G + S S D+T+ VW
Sbjct: 207 IVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW--- 261
Query: 1142 QRKLELIEVIATKE 1155
V+ATKE
Sbjct: 262 --------VVATKE 267
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + M + + H V++ G ++S S D +W
Sbjct: 124 LIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146
K + L++ + H KAV+S GE L S SADK I +W K E
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + M + + H V++ G ++S S D +W
Sbjct: 124 LIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146
K + L++ + H KAV+S GE L S SADK I +W K E
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.0 bits (84), Expect = 0.077, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1077 YYKGLLCSGFSDGSIKMWDIKKQSAML--VWDVKEHRKAVTSFSLFEPGESLLS-GSADK 1133
+ +G+L +G +D IK+ +K L V D H+KA+ S + + P SLL+ GS D
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA-WRPHTSLLAAGSFDS 80
Query: 1134 TIGVW 1138
T+ +W
Sbjct: 81 TVSIW 85
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 1079 KGLLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGESLLSGSADKTIG 1136
+G+L + S G++++W++ + ++V EH V++ S+ G +SGS D I
Sbjct: 94 RGILVASDS-GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 1137 VWQMVQR 1143
VW + Q+
Sbjct: 153 VWDLAQQ 159
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 1058 HTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTS 1116
HT ++E V+ + ++ L S D + +WD + ++ V H V
Sbjct: 226 HTAVVED-------VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 1117 FSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFAST-Q 1172
S E +L +GSADKT+ +W + KL+L + K+ I ++ + +TI AS+
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 1173 GHRMKVIDSSR 1183
R+ V D S+
Sbjct: 339 DRRLNVWDLSK 349
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 1130
+ L Y L+ SG SD +I++WDI+ + + V + E F + ++SG+
Sbjct: 298 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD----NKRIVSGA 353
Query: 1131 ADKTIGVWQMV 1141
D I VW +V
Sbjct: 354 YDGKIKVWDLV 364
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 1069 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLS 1128
+G+V L Y + ++ +G SD ++++WD+ + ++ + H +AV F G +++
Sbjct: 173 TGSVLCLQYDERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAVLHLR-FNNG-MMVT 228
Query: 1129 GSADKTIGVWQMVQ-RKLELIEV-IATKEPIRKLDTYGKTIFASTQGHRMKVIDSS---- 1182
S D++I VW M + L V + + + +D K I +++ +KV ++S
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 288
Query: 1183 -RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQ 1214
RTL +GI + + G D++I+
Sbjct: 289 VRTLNG--HKRGIACLQYRDRLVVSGSSDNTIR 319
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 1058 HTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTS 1116
HT ++E V + ++ L S D + +WD + ++ V H V
Sbjct: 230 HTAVVED-------VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 1117 FSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFAST-Q 1172
S E +L +GSADKT+ +W + KL+L + K+ I ++ + +TI AS+
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 1173 GHRMKVIDSSR 1183
R+ V D S+
Sbjct: 343 DRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 1058 HTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTS 1116
HT ++E V + ++ L S D + +WD + ++ V H V
Sbjct: 232 HTAVVED-------VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 1117 FSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFAST-Q 1172
S E +L +GSADKT+ +W + KL+L + K+ I ++ + +TI AS+
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 1173 GHRMKVIDSSR 1183
R+ V D S+
Sbjct: 345 DRRLHVWDLSK 355
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL +G++D +I +WD+ K S + + + H V++ + G + SGS D T+ VW
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSI--LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 1087 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGESLLSGSADKTIGVWQMVQRK 1144
DG+ +WD+ +S L+ H V L E G + +SG DK VW M R
Sbjct: 174 GDGTCALWDV--ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM--RS 229
Query: 1145 LELIEVIATKE 1155
+ ++ T E
Sbjct: 230 GQCVQAFETHE 240
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 1058 HTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTS 1116
HT ++E V + ++ L S D + +WD + ++ V H V
Sbjct: 234 HTAVVED-------VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 1117 FSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFAST-Q 1172
S E +L +GSADKT+ +W + KL+L + K+ I ++ + +TI AS+
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 1173 GHRMKVIDSSR 1183
R+ V D S+
Sbjct: 347 DRRLHVWDLSK 357
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146
H KAV+S GE L S SADK I +W K E
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 30/123 (24%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ-- 1139
L S D +K+W +K S + HR VT ++ + G ++LS S D TI +W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211
Query: 1140 -----------------------MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRM 1176
V +L E+ +K+ + TYGK + A GH
Sbjct: 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA---GHVS 268
Query: 1177 KVI 1179
VI
Sbjct: 269 GVI 271
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 30/123 (24%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ-- 1139
L S D +K+W +K S + HR VT ++ + G ++LS S D TI +W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 208
Query: 1140 -----------------------MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRM 1176
V +L E+ +K+ + TYGK + A GH
Sbjct: 209 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA---GHVS 265
Query: 1177 KVI 1179
VI
Sbjct: 266 GVI 268
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146
H KAV+S GE L S SADK I +W K E
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 82
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146
H KAV+S GE L S SADK I +W K E
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 75
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 1054 ISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA 1113
+S ++T ++ SH+ + YY L + SD S+K++D++ +L+ D++ H
Sbjct: 2 VSVINT--VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP 59
Query: 1114 VTSFSLFEP--GESLLSGSADKTIGVWQ 1139
V + P G L S S D+ + +W+
Sbjct: 60 VWQVAWAHPMYGNILASCSYDRKVIIWR 87
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1076 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLL-SGSADK 1133
+ ++ L S D + +WD + + V H V S E +L +GSADK
Sbjct: 239 LLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 1134 TIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFAST-QGHRMKVIDSSR 1183
T+ +W + KL+L + K+ I ++ + +TI AS+ R+ V D S+
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
++ SG D +K+WD+ + LV D+K H VTS ++ G S D +W +
Sbjct: 168 VIVSGGWDNLVKVWDLA--TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 1141 VQRKLELIEVIATKEPIRKL 1160
K E + +A PI ++
Sbjct: 226 T--KGEALSEMAAGAPINQI 243
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 1072 VTALIYYKGLLCSGFSDGSIKMWDIK-----KQSAMLVWDVKEHRKAVTSFSLFEPGESL 1126
V + ++ L S D + +WD + K S + V H V S E +
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL----VDAHTAEVNCLSFNPYSEFI 290
Query: 1127 L-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFAST-QGHRMKVIDSS 1182
L +GSADKT+ +W + KL+L + K+ I ++ + +TI AS+ R+ V D S
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 1183 R 1183
+
Sbjct: 351 K 351
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 61
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 62 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 1256 SVEG 1259
S +G
Sbjct: 171 SYDG 174
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 269
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKS 1196
TKE ++KL + + ST H + I +S L++ K KS
Sbjct: 270 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALENDKTIKLFKS 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L + SADK I +W K E
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE----------- 61
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 62 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 1256 SVEG 1259
S +G
Sbjct: 171 SYDG 174
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 269
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 270 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 304
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 61
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 62 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 1256 SVEG 1259
S +G
Sbjct: 171 SYDG 174
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 269
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 270 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 57
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 58 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 106
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 107 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 166
Query: 1256 SVEG 1259
S +G
Sbjct: 167 SYDG 170
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 265
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 266 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 300
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 64
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 65 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 1256 SVEG 1259
S +G
Sbjct: 174 SYDG 177
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 272
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 273 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 307
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 54
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 55 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 163
Query: 1256 SVEG 1259
S +G
Sbjct: 164 SYDG 167
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 262
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 263 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 297
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 63
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 64 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 172
Query: 1256 SVEG 1259
S +G
Sbjct: 173 SYDG 176
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 271
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 272 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 306
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 1087 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKL 1145
SDG+I +WD+ Q+ LV + H + + G L +G D T+ W + + R+L
Sbjct: 161 SDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 1146 E 1146
+
Sbjct: 219 Q 219
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 58
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 59 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 1256 SVEG 1259
S +G
Sbjct: 168 SYDG 171
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 266
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 267 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 301
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 64
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 65 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 1256 SVEG 1259
S +G
Sbjct: 174 SYDG 177
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 272
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 273 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 307
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 59
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 60 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 168
Query: 1256 SVEG 1259
S +G
Sbjct: 169 SYDG 172
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 267
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 268 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 302
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 64
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 65 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 1256 SVEG 1259
S +G
Sbjct: 174 SYDG 177
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 272
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 273 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140
L+ SG D S+++WD+K + + H V++ G ++S S D +W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 1141 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 1183
+ + P+ K GK I A+T + +K+ D S+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 1098 KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157
K + L + + H KAV+S GE L S SADK I +W K E
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----------- 58
Query: 1158 RKLDTYGKTIFASTQGHRMKVID-----SSRTLKDIYRSKGIKSMSVVQGKI-------- 1204
KTI GH++ + D S L K +K V GK
Sbjct: 59 -------KTI----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 1205 -YIGCMDSSIQE-LAVSNNVEREIK-------APFKSWRLQSKPINSLVVYKDWLYSASS 1255
Y+ C + + Q L VS + + ++ K+ S P++++ +D SS
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 1256 SVEG 1259
S +G
Sbjct: 168 SYDG 171
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1088 DGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145
D ++K+WD K + + ++ K +FS+ G+ ++SGS D + +W +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNL----- 266
Query: 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187
TKE ++KL + + ST H + I +S L++
Sbjct: 267 ------QTKEIVQKLQGHTDVVI-STACHPTENIIASAALEN 301
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1071 AVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ES 1125
V + YY K + + D +IK+WD + +S + ++ H V SF++F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNV-SFAVFHPTLPI 242
Query: 1126 LLSGSADKTIGVWQMVQRKLE 1146
++SGS D T+ +W K+E
Sbjct: 243 IISGSEDGTLKIWNSSTYKVE 263
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 1079 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
K + SG D ++K+W+ + A+ ++ EH +F+ +P + SG D+T+ V
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 1138 WQMVQRKLELIEVIATKEPIRKLDTY 1163
W + Q + + +D Y
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYY 193
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1071 AVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ES 1125
V + YY K + + D +IK+WD + +S + ++ H V SF++F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNV-SFAVFHPTLPI 242
Query: 1126 LLSGSADKTIGVWQMVQRKLE 1146
++SGS D T+ +W K+E
Sbjct: 243 IISGSEDGTLKIWNSSTYKVE 263
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 1079 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
K + SG D ++K+W+ + A+ ++ EH +F+ +P + SG D+T+ V
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 1138 WQMVQRKLELIEVIATKEPIRKLDTY 1163
W + Q + + +D Y
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYY 193
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 1060 QILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIK 1097
Q L+ +K AVT L + K + + DG++K+WD+K
Sbjct: 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 1055 SCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKA 1113
+C+HT S + + +L SG +D ++K+WDIK Q + +H+ A
Sbjct: 310 NCIHTLTGHQS-----LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE 1155
VT + +++ S D T+ +W + + E I + T E
Sbjct: 365 VTCLQFNK--NFVITSSDDGTVKLWDL--KTGEFIRNLVTLE 402
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1084 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
SG DG++++WD+ + H K V S + ++SGS DKTI +W +
Sbjct: 80 SGSWDGTLRLWDLTTGTTTR--RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1071 AVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ES 1125
V + YY K + + D +IK+WD + +S + ++ H V SF++F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNV-SFAVFHPTLPI 242
Query: 1126 LLSGSADKTIGVWQMVQRKLE 1146
++SGS D T+ +W K+E
Sbjct: 243 IISGSEDGTLKIWNSSTYKVE 263
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 1079 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
K + SG D ++K+W+ + A+ ++ EH +F+ +P + SG D+T+ V
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 1138 WQMVQRKLELIEVIATKEPIRKLDTY 1163
W + Q + + +D Y
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYY 193
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1084 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
SG DG++++WD+ + H K V S + ++SGS DKTI +W +
Sbjct: 103 SGSWDGTLRLWDLTTGTTTR--RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1071 AVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ES 1125
V + YY K + + D +IK+WD + +S + ++ H V SF++F P
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNV-SFAVFHPTLPI 242
Query: 1126 LLSGSADKTIGVWQMVQRKLE 1146
++SGS D T+ +W K+E
Sbjct: 243 IISGSEDGTLKIWNSSTYKVE 263
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 1079 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
K + SG D ++K+W+ + A+ ++ EH +F+ +P + SG D+T+ V
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 1138 WQMVQRKLELIEVIATKEPIRKLDTY 1163
W + Q + + +D Y
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYY 193
>pdb|2QNE|A Chain A, Crystal Structure Of Putative Methyltransferase
(Zp_00558420.1) From Desulfitobacterium Hafniense Y51 At
2.30 A Resolution
pdb|2QNE|B Chain B, Crystal Structure Of Putative Methyltransferase
(Zp_00558420.1) From Desulfitobacterium Hafniense Y51 At
2.30 A Resolution
Length = 495
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 510 KFNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKY 569
K +++C G + K + +E I+++ F G KD + E L ++NS T +KY
Sbjct: 174 KNSDKCFXGSAEGKERAEDSVE--IAAILFGG------KDVIKEKPVLVSLINSLTPLKY 225
Query: 570 DMLQDVILEQLLTAISASKE--ETVIRASV---------SILTTIILANESVIEDI 614
D E+ L A+ A E + VI AS+ S+ T+ L N V+ I
Sbjct: 226 D-------ERXLGALXAYAEAGQAVIIASLVXAGSTGPASLAGTLSLQNAEVLAGI 274
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134
L SG D S K+WD+++ M H + + F G + +GS D T
Sbjct: 209 LFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134
L SG D S K+WD+++ M H + + F G + +GS D T
Sbjct: 198 LFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134
L SG D S K+WD+++ M H + + F G + +GS D T
Sbjct: 198 LFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134
L SG D S K+WD+++ M H + + F G + +GS D T
Sbjct: 198 LFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 1083 CSGFSDGSIKM---WDIKKQSAMLVWDVKE---------HRKAVTSFSLFEPGESLLSGS 1130
C+ +DG+ + WD + +WDV H+ V S + + ++SGS
Sbjct: 71 CTLTADGAYALSASWD----KTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS 126
Query: 1131 ADKTIGVWQM 1140
DKTI VW +
Sbjct: 127 RDKTIKVWTI 136
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The
Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134
L SG D S K+WD+++ M H + + F G + +GS D T
Sbjct: 198 LFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 1068 CSGAVTALIYYKGLLCS--------------GFSDGSIKMWDIKKQSAMLVWDVKEHRKA 1113
CSGA + + +CS GF+ + +W K + V ++K H
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIW--KYPTMAKVAELKGHTSR 286
Query: 1114 VTSFSLFEPGESLLSGSADKTIGVWQ 1139
V S ++ G ++ S +AD+T+ +W+
Sbjct: 287 VLSLTMSPDGATVASAAADETLRLWR 312
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL +G+S+G +WD +L H ++ L G +L +GS DK + +W
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 582 TAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYL 641
T+ + E+ ++ A+ + L ++ ED+K KGL +D AT ++ E A L L
Sbjct: 1760 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-ATFAGHSLGEYAALASL 1818
Query: 642 IKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNM 701
++ ++E +LVEV+ Y+G M ++V V + +N
Sbjct: 1819 -----ADVMSIE---SLVEVV----FYRG--------------MTMQVAVPRDELGRSNY 1852
Query: 702 HLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLS 749
+ AIN RV A +E + LV+ + ++ + ++Y++
Sbjct: 1853 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1900
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 1083 CSGFSDGSIKM---WDIKKQSAMLVWDVKE---------HRKAVTSFSLFEPGESLLSGS 1130
C+ +DG+ + WD + +WDV H+ V S + + ++SGS
Sbjct: 71 CTLTADGAYALSASWD----KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 1131 ADKTIGVWQM 1140
DKTI VW +
Sbjct: 127 RDKTIKVWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 1083 CSGFSDGSIKM---WDIKKQSAMLVWDVKE---------HRKAVTSFSLFEPGESLLSGS 1130
C+ +DG+ + WD + +WDV H+ V S + + ++SGS
Sbjct: 65 CTLTADGAYALSASWD----KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 1131 ADKTIGVWQM 1140
DKTI VW +
Sbjct: 121 RDKTIKVWTI 130
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1078 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
Y L S +++W+I S + V D + H V G S L+ S D+TI V
Sbjct: 851 YDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 1138 WQ 1139
W+
Sbjct: 909 WE 910
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
L S D I++W+ + + + + H++ V F L + LLS S D T+ VW ++
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFL---QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVI 1073
Query: 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG 1193
++E + + T F+ST + I S L ++ KG
Sbjct: 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1078 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137
Y L S +++W+I S + V D + H V G S L+ S D+TI V
Sbjct: 858 YDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 1138 WQ 1139
W+
Sbjct: 916 WE 917
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
L S D I++W+ + + + + H++ V F L + LLS S D T+ VW ++
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFL---QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVI 1080
Query: 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG 1193
++E + + T F+ST + I S L ++ KG
Sbjct: 1081 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1132
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL S D ++++W+I+ + + ++ V+ HR V S GE ++S D ++ +W
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Query: 1139 QMVQRKL 1145
++ +++
Sbjct: 225 RINSKRM 231
>pdb|2K32|A Chain A, Truncated Acra From Campylobacter Jejuni For Glycosylation
Studies
pdb|2K33|A Chain A, Solution Structure Of An N-Glycosylated Protein Using In
Vitro Glycosylation
Length = 116
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 1172 QGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPF 1230
+G + +I+ + KD RSK + S S + K Y DSS+ L EIKAPF
Sbjct: 25 KGQTLFIIEQDQASKDFNRSKALFSQSAISQKEY----DSSLATLD-----HTEIKAPF 74
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL S D ++++W+I+ + + ++ V+ HR V S GE ++S D ++ +W
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 1139 QMVQRKL 1145
++ +++
Sbjct: 188 RINSKRM 194
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL S D ++++W+I+ + + ++ V+ HR V S GE ++S D ++ +W
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Query: 1139 QMVQRKL 1145
++ +++
Sbjct: 189 RINSKRM 195
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL S D ++++W+I+ + + ++ V+ HR V S GE ++S D ++ +W
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 1139 QMVQRKL 1145
++ +++
Sbjct: 188 RINSKRM 194
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138
LL S D ++++W+I+ + + ++ V+ HR V S GE ++S D ++ +W
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Query: 1139 QMVQRKL 1145
++ +++
Sbjct: 184 RINSKRM 190
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141
L S D I++W+ + + + + H++ V F L + LLS S D T+ VW ++
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIFL---RGHQETVKDFRLLK-NSRLLSWSFDGTVKVWNII 1079
Query: 1142 QRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG 1193
E + + + + D ++ T F+ST + I S L ++ +G
Sbjct: 1080 TGNKEK-DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG 1131
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 582 TAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYL 641
T+ + E+ ++ A+ + L ++ ED+K KGL +D AT ++ E A L L
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-ATFAGHSLGEYAALASL 1773
Query: 642 IKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNM 701
++ ++E +LVEV+ Y+G M ++V V + +N
Sbjct: 1774 -----ADVMSIE---SLVEVV----FYRG--------------MTMQVAVPRDELGRSNY 1807
Query: 702 HLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLS 749
+ AIN RV A +E + LV+ + ++ + ++Y++
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,712,362
Number of Sequences: 62578
Number of extensions: 1290020
Number of successful extensions: 3675
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 3447
Number of HSP's gapped (non-prelim): 244
length of query: 1349
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1238
effective length of database: 8,027,179
effective search space: 9937647602
effective search space used: 9937647602
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)