Query 000694
Match_columns 1349
No_of_seqs 867 out of 4005
Neff 6.3
Searched_HMMs 46136
Date Mon Apr 1 22:06:18 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.7E-35 1.2E-39 324.7 25.8 280 1065-1347 111-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-31 3.2E-36 301.5 23.1 272 1067-1348 173-459 (459)
3 KOG0293 WD40 repeat-containing 100.0 7.7E-31 1.7E-35 294.0 21.5 346 974-1348 150-512 (519)
4 KOG0286 G-protein beta subunit 100.0 2.2E-27 4.8E-32 257.9 32.8 276 1063-1347 49-343 (343)
5 KOG0279 G protein beta subunit 100.0 3.9E-27 8.5E-32 254.9 31.9 276 1063-1348 9-312 (315)
6 KOG0281 Beta-TrCP (transducin 100.0 1.9E-29 4.2E-34 277.3 13.8 267 1067-1349 195-477 (499)
7 KOG0271 Notchless-like WD40 re 100.0 3.8E-28 8.2E-33 270.6 23.9 287 1001-1308 138-479 (480)
8 KOG0285 Pleiotropic regulator 100.0 7.7E-28 1.7E-32 266.2 23.9 273 1063-1347 145-437 (460)
9 KOG0319 WD40-repeat-containing 100.0 1.8E-27 4E-32 282.7 28.2 338 1002-1348 86-576 (775)
10 KOG0295 WD40 repeat-containing 100.0 1.1E-27 2.3E-32 266.5 23.9 275 1065-1348 104-405 (406)
11 KOG0315 G-protein beta subunit 100.0 9.3E-27 2E-31 248.2 28.5 259 1081-1348 12-287 (311)
12 KOG0273 Beta-transducin family 100.0 1E-26 2.2E-31 265.2 30.5 269 1069-1348 235-522 (524)
13 KOG0272 U4/U6 small nuclear ri 100.0 7.9E-28 1.7E-32 271.6 19.0 265 1034-1308 182-458 (459)
14 cd00200 WD40 WD40 domain, foun 100.0 1.7E-25 3.7E-30 244.5 36.2 274 1064-1347 4-289 (289)
15 KOG0315 G-protein beta subunit 100.0 4.6E-26 9.9E-31 243.0 28.4 277 1051-1330 19-309 (311)
16 KOG0265 U5 snRNP-specific prot 99.9 8E-26 1.7E-30 246.7 27.8 274 1063-1345 41-334 (338)
17 KOG0282 mRNA splicing factor [ 99.9 5.3E-27 1.1E-31 268.7 19.5 284 1057-1347 202-503 (503)
18 KOG0263 Transcription initiati 99.9 2.5E-26 5.4E-31 276.2 23.4 236 1068-1348 377-648 (707)
19 KOG0286 G-protein beta subunit 99.9 5.8E-25 1.3E-29 239.2 28.6 238 1104-1349 48-303 (343)
20 KOG0313 Microtubule binding pr 99.9 1.8E-25 4E-30 249.8 24.8 271 1066-1347 102-416 (423)
21 KOG0284 Polyadenylation factor 99.9 3.4E-26 7.3E-31 257.3 16.3 269 1069-1347 96-378 (464)
22 KOG0276 Vesicle coat complex C 99.9 5.4E-25 1.2E-29 256.8 25.5 271 1065-1345 9-295 (794)
23 KOG0279 G protein beta subunit 99.9 1.4E-24 3.1E-29 235.2 26.4 237 1062-1310 56-313 (315)
24 KOG0316 Conserved WD40 repeat- 99.9 2.3E-24 4.9E-29 228.4 26.0 273 1061-1346 9-296 (307)
25 KOG0319 WD40-repeat-containing 99.9 1.3E-24 2.8E-29 258.7 25.9 273 1065-1347 319-617 (775)
26 KOG0273 Beta-transducin family 99.9 1.8E-24 3.9E-29 246.9 25.6 273 1067-1348 176-481 (524)
27 PLN00181 protein SPA1-RELATED; 99.9 3.4E-23 7.4E-28 268.7 39.9 276 1065-1349 479-793 (793)
28 KOG0318 WD40 repeat stress pro 99.9 7E-23 1.5E-27 236.3 37.1 281 1064-1348 185-559 (603)
29 KOG0266 WD40 repeat-containing 99.9 1E-23 2.2E-28 257.0 31.2 276 1067-1348 157-453 (456)
30 KOG0292 Vesicle coat complex C 99.9 3.1E-24 6.8E-29 257.3 25.6 277 1065-1346 5-318 (1202)
31 KOG0281 Beta-TrCP (transducin 99.9 2E-25 4.3E-30 245.8 13.0 228 1110-1348 196-427 (499)
32 KOG0274 Cdc4 and related F-box 99.9 1.1E-23 2.3E-28 258.2 29.2 269 1067-1348 206-481 (537)
33 KOG0291 WD40-repeat-containing 99.9 1.5E-22 3.2E-27 240.9 37.4 271 1069-1348 265-549 (893)
34 KOG0296 Angio-associated migra 99.9 5.7E-23 1.2E-27 229.3 31.7 283 1061-1348 56-397 (399)
35 KOG0288 WD40 repeat protein Ti 99.9 6.6E-25 1.4E-29 247.4 16.4 274 1065-1347 171-459 (459)
36 KOG0645 WD40 repeat protein [G 99.9 1.1E-22 2.3E-27 219.9 31.2 277 1062-1348 7-310 (312)
37 KOG0291 WD40-repeat-containing 99.9 1.8E-22 4E-27 240.1 31.3 269 1069-1348 307-611 (893)
38 KOG0263 Transcription initiati 99.9 2.8E-23 6.2E-28 250.0 23.7 202 1063-1311 445-650 (707)
39 KOG0285 Pleiotropic regulator 99.9 3.9E-23 8.5E-28 229.2 21.2 237 1103-1348 143-388 (460)
40 KOG0278 Serine/threonine kinas 99.9 1.8E-23 3.9E-28 223.0 16.7 270 1064-1347 9-295 (334)
41 KOG0295 WD40 repeat-containing 99.9 4.4E-23 9.5E-28 230.0 19.9 251 1050-1309 128-405 (406)
42 KOG0301 Phospholipase A2-activ 99.9 2.6E-22 5.6E-27 237.8 27.1 270 1063-1347 8-286 (745)
43 KOG0306 WD40-repeat-containing 99.9 2.3E-22 4.9E-27 239.3 26.4 271 1065-1347 369-662 (888)
44 cd00200 WD40 WD40 domain, foun 99.9 2.3E-21 5E-26 212.0 32.5 245 1054-1308 36-289 (289)
45 KOG0284 Polyadenylation factor 99.9 1.5E-23 3.2E-28 236.1 14.1 230 1111-1348 96-336 (464)
46 KOG1407 WD40 repeat protein [F 99.9 9.9E-22 2.2E-26 211.4 27.0 275 1065-1346 16-308 (313)
47 KOG0318 WD40 repeat stress pro 99.9 4.9E-21 1.1E-25 221.2 34.1 329 1003-1348 215-601 (603)
48 KOG0276 Vesicle coat complex C 99.9 6.6E-22 1.4E-26 231.2 26.8 282 1031-1322 17-310 (794)
49 KOG0274 Cdc4 and related F-box 99.9 5.6E-22 1.2E-26 243.2 27.5 253 1051-1318 230-490 (537)
50 KOG0268 Sof1-like rRNA process 99.9 4.4E-23 9.5E-28 229.5 15.6 269 1065-1348 62-344 (433)
51 KOG0292 Vesicle coat complex C 99.9 1.2E-21 2.7E-26 235.3 27.3 249 1062-1319 44-330 (1202)
52 PLN00181 protein SPA1-RELATED; 99.9 1.1E-20 2.3E-25 245.5 35.2 237 1068-1309 531-792 (793)
53 KOG0278 Serine/threonine kinas 99.9 1.4E-22 3E-27 216.3 13.0 241 1064-1315 54-302 (334)
54 KOG0266 WD40 repeat-containing 99.9 7.3E-21 1.6E-25 232.0 28.7 241 1061-1310 195-454 (456)
55 KOG0316 Conserved WD40 repeat- 99.9 3.8E-21 8.2E-26 204.1 21.2 236 1104-1349 10-257 (307)
56 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.5E-25 206.7 25.0 265 1063-1337 21-311 (347)
57 KOG0275 Conserved WD40 repeat- 99.9 1.3E-21 2.9E-26 213.9 17.2 277 1066-1348 210-508 (508)
58 KOG0296 Angio-associated migra 99.9 3.6E-20 7.8E-25 207.1 28.0 245 1054-1310 91-398 (399)
59 KOG0306 WD40-repeat-containing 99.9 1.9E-20 4.2E-25 223.0 26.2 343 993-1348 36-483 (888)
60 KOG1446 Histone H3 (Lys4) meth 99.9 3E-19 6.4E-24 197.6 33.2 279 1065-1348 10-302 (311)
61 KOG0265 U5 snRNP-specific prot 99.9 2.2E-20 4.8E-25 204.5 23.4 237 1104-1348 40-295 (338)
62 KOG1036 Mitotic spindle checkp 99.9 5.6E-20 1.2E-24 202.3 26.6 261 1068-1339 12-294 (323)
63 KOG0645 WD40 repeat protein [G 99.9 1E-19 2.3E-24 196.9 27.8 237 1102-1347 5-259 (312)
64 KOG0282 mRNA splicing factor [ 99.9 4.1E-21 9E-26 220.6 17.0 283 1011-1308 205-503 (503)
65 KOG0277 Peroxisomal targeting 99.9 2.1E-20 4.5E-25 200.6 20.9 255 1087-1348 36-308 (311)
66 KOG0293 WD40 repeat-containing 99.9 1.9E-20 4.2E-25 210.9 20.8 239 1062-1311 262-514 (519)
67 KOG0313 Microtubule binding pr 99.9 7.1E-20 1.5E-24 205.4 25.0 243 1063-1309 138-417 (423)
68 KOG0283 WD40 repeat-containing 99.9 2.3E-20 5E-25 226.9 22.8 243 1063-1311 260-577 (712)
69 KOG0643 Translation initiation 99.9 5.6E-20 1.2E-24 198.4 22.9 271 1065-1346 6-314 (327)
70 KOG0294 WD40 repeat-containing 99.8 3.1E-19 6.7E-24 196.5 27.1 254 1064-1329 38-305 (362)
71 KOG0305 Anaphase promoting com 99.8 3.3E-19 7.1E-24 212.5 28.0 264 1075-1348 183-460 (484)
72 KOG0305 Anaphase promoting com 99.8 1.5E-19 3.2E-24 215.5 23.8 267 1033-1312 183-463 (484)
73 KOG0310 Conserved WD40 repeat- 99.8 1.4E-19 2.9E-24 208.7 22.3 265 1068-1345 25-305 (487)
74 KOG0772 Uncharacterized conser 99.8 1.9E-19 4.2E-24 207.3 22.8 278 1065-1346 163-484 (641)
75 PTZ00420 coronin; Provisional 99.8 1.5E-18 3.3E-23 213.9 32.3 225 1084-1348 49-292 (568)
76 KOG0299 U3 snoRNP-associated p 99.8 7.7E-19 1.7E-23 201.2 26.0 273 1064-1346 137-453 (479)
77 KOG0277 Peroxisomal targeting 99.8 1E-19 2.3E-24 195.3 17.2 234 1069-1309 60-308 (311)
78 KOG0640 mRNA cleavage stimulat 99.8 3.4E-19 7.3E-24 195.0 21.3 277 1065-1347 108-424 (430)
79 KOG0289 mRNA splicing factor [ 99.8 1.2E-18 2.6E-23 198.0 25.7 269 1069-1347 219-504 (506)
80 KOG1539 WD repeat protein [Gen 99.8 3.1E-18 6.7E-23 206.7 30.3 345 987-1347 165-646 (910)
81 KOG0973 Histone transcription 99.8 1.4E-18 3E-23 215.8 27.7 279 1068-1347 12-353 (942)
82 KOG0300 WD40 repeat-containing 99.8 6.8E-19 1.5E-23 192.6 21.4 276 1062-1348 141-475 (481)
83 PTZ00421 coronin; Provisional 99.8 8E-18 1.7E-22 206.1 33.5 245 1080-1330 33-312 (493)
84 KOG0283 WD40 repeat-containing 99.8 6.4E-19 1.4E-23 214.4 22.5 237 1104-1348 259-575 (712)
85 KOG0308 Conserved WD40 repeat- 99.8 1.6E-19 3.5E-24 212.9 16.6 260 1081-1347 39-325 (735)
86 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.5E-17 7.5E-22 184.9 33.6 258 1081-1348 3-278 (300)
87 KOG0288 WD40 repeat protein Ti 99.8 2.3E-19 4.9E-24 203.0 15.0 238 1063-1307 213-458 (459)
88 KOG0310 Conserved WD40 repeat- 99.8 2.2E-18 4.7E-23 198.9 23.1 235 1065-1309 64-308 (487)
89 KOG1408 WD40 repeat protein [F 99.8 3.1E-18 6.7E-23 202.3 24.2 280 1066-1348 366-712 (1080)
90 KOG0308 Conserved WD40 repeat- 99.8 1E-18 2.2E-23 206.2 19.3 236 1110-1346 20-282 (735)
91 KOG0301 Phospholipase A2-activ 99.8 4.1E-18 8.8E-23 202.6 24.3 229 1064-1310 52-288 (745)
92 PTZ00421 coronin; Provisional 99.8 1.6E-17 3.6E-22 203.3 30.5 222 1065-1292 71-315 (493)
93 KOG0641 WD40 repeat protein [G 99.8 2E-16 4.3E-21 167.0 31.8 279 1068-1347 31-347 (350)
94 KOG1407 WD40 repeat protein [F 99.8 5.3E-18 1.1E-22 182.9 19.4 232 1105-1345 14-257 (313)
95 KOG0643 Translation initiation 99.8 6.4E-18 1.4E-22 182.6 19.9 248 1052-1310 35-317 (327)
96 KOG0264 Nucleosome remodeling 99.8 1E-17 2.2E-22 192.4 21.8 242 1066-1348 121-403 (422)
97 PTZ00420 coronin; Provisional 99.8 7.7E-17 1.7E-21 198.9 31.2 225 1062-1332 67-317 (568)
98 KOG0275 Conserved WD40 repeat- 99.8 1.4E-18 3.1E-23 190.3 14.1 234 1067-1308 261-507 (508)
99 KOG2106 Uncharacterized conser 99.8 1.6E-16 3.5E-21 183.2 31.3 263 1070-1348 247-520 (626)
100 KOG0650 WD40 repeat nucleolar 99.8 1.4E-17 3E-22 194.9 22.7 281 1057-1347 388-733 (733)
101 KOG0300 WD40 repeat-containing 99.8 1E-17 2.2E-22 183.6 19.7 285 1012-1312 140-478 (481)
102 KOG0294 WD40 repeat-containing 99.8 4.3E-17 9.3E-22 179.8 24.8 253 1082-1348 4-280 (362)
103 KOG0299 U3 snoRNP-associated p 99.8 1.1E-17 2.4E-22 191.8 20.8 228 1067-1299 200-444 (479)
104 KOG1332 Vesicle coat complex C 99.8 1.3E-17 2.7E-22 178.6 18.8 240 1065-1308 7-284 (299)
105 KOG1446 Histone H3 (Lys4) meth 99.8 4.3E-16 9.4E-21 172.7 28.8 236 1104-1348 7-261 (311)
106 KOG0772 Uncharacterized conser 99.7 2.8E-17 6E-22 189.8 18.8 243 1105-1348 161-444 (641)
107 KOG0289 mRNA splicing factor [ 99.7 1.3E-16 2.9E-21 181.5 23.7 239 1060-1309 252-505 (506)
108 KOG1539 WD repeat protein [Gen 99.7 6.5E-16 1.4E-20 186.9 30.9 296 1050-1348 183-605 (910)
109 KOG2048 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 184.8 29.3 272 1069-1345 25-315 (691)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.3E-15 7.2E-20 168.8 33.8 256 1071-1330 32-299 (300)
111 KOG2055 WD40 repeat protein [G 99.7 4.7E-16 1E-20 178.4 25.1 276 1066-1348 210-511 (514)
112 KOG2096 WD40 repeat protein [G 99.7 5.6E-16 1.2E-20 170.7 24.2 288 1056-1346 73-399 (420)
113 KOG0647 mRNA export protein (c 99.7 5.9E-16 1.3E-20 170.1 24.1 228 1063-1298 66-311 (347)
114 KOG1274 WD40 repeat protein [G 99.7 6.9E-16 1.5E-20 188.6 25.7 234 1108-1348 10-261 (933)
115 KOG1063 RNA polymerase II elon 99.7 2.6E-16 5.7E-21 187.2 21.5 285 1063-1347 185-646 (764)
116 KOG0646 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 183.1 18.6 227 1068-1329 80-327 (476)
117 KOG0268 Sof1-like rRNA process 99.7 2.7E-17 5.8E-22 183.8 12.2 235 1104-1348 59-301 (433)
118 KOG1036 Mitotic spindle checkp 99.7 6.4E-16 1.4E-20 170.6 22.8 227 1066-1300 51-294 (323)
119 KOG0973 Histone transcription 99.7 4.1E-16 8.9E-21 194.2 23.8 243 1063-1312 63-357 (942)
120 KOG1274 WD40 repeat protein [G 99.7 2E-15 4.3E-20 184.6 29.2 273 1066-1346 10-297 (933)
121 KOG2445 Nuclear pore complex c 99.7 2.1E-15 4.5E-20 166.1 26.5 245 1065-1347 9-316 (361)
122 KOG1332 Vesicle coat complex C 99.7 2.1E-16 4.5E-21 169.4 17.5 236 1108-1348 8-285 (299)
123 KOG0646 WD40 repeat protein [G 99.7 9.3E-16 2E-20 176.5 23.9 259 1084-1348 12-306 (476)
124 KOG0639 Transducin-like enhanc 99.7 4E-16 8.8E-21 179.3 20.8 273 1066-1348 416-703 (705)
125 KOG0321 WD40 repeat-containing 99.7 8.2E-16 1.8E-20 181.7 23.7 266 1081-1348 66-390 (720)
126 KOG0640 mRNA cleavage stimulat 99.7 1.9E-16 4E-21 173.7 17.1 248 1061-1310 164-426 (430)
127 KOG1273 WD40 repeat protein [G 99.7 3.1E-15 6.7E-20 164.9 23.2 265 1072-1348 26-321 (405)
128 KOG0641 WD40 repeat protein [G 99.7 1.3E-14 2.8E-19 153.4 26.5 237 1066-1310 86-349 (350)
129 KOG4328 WD40 protein [Function 99.7 2.9E-15 6.2E-20 172.0 22.9 279 1066-1347 183-493 (498)
130 KOG0270 WD40 repeat-containing 99.7 1.4E-15 2.9E-20 174.3 19.4 228 1081-1349 194-449 (463)
131 KOG2106 Uncharacterized conser 99.7 9.2E-14 2E-18 160.7 33.7 283 1051-1347 182-475 (626)
132 KOG0321 WD40 repeat-containing 99.7 2.3E-15 5E-20 177.9 20.7 243 1065-1312 96-393 (720)
133 KOG0269 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 183.8 17.6 228 1114-1348 42-295 (839)
134 KOG1408 WD40 repeat protein [F 99.7 1.9E-15 4.1E-20 179.0 18.9 240 1066-1311 456-714 (1080)
135 KOG4283 Transcription-coupled 99.7 1.9E-14 4.2E-19 157.4 25.0 278 1066-1348 40-364 (397)
136 KOG0269 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 181.4 19.3 268 1070-1344 40-335 (839)
137 KOG0267 Microtubule severing p 99.7 1.3E-16 2.9E-21 190.2 9.0 228 1065-1302 24-260 (825)
138 KOG0264 Nucleosome remodeling 99.7 3.7E-15 7.9E-20 171.6 19.9 214 1109-1348 122-346 (422)
139 KOG0302 Ribosome Assembly prot 99.7 6.9E-15 1.5E-19 165.5 21.2 240 1066-1348 148-437 (440)
140 KOG0642 Cell-cycle nuclear pro 99.6 1.3E-15 2.9E-20 178.5 16.0 256 1065-1321 290-572 (577)
141 KOG0267 Microtubule severing p 99.6 7.4E-16 1.6E-20 184.0 9.8 242 1082-1340 7-259 (825)
142 KOG2096 WD40 repeat protein [G 99.6 2.7E-14 5.8E-19 157.7 20.1 211 1105-1348 80-307 (420)
143 KOG4378 Nuclear protein COP1 [ 99.6 2.7E-14 5.8E-19 164.5 20.7 256 1086-1348 9-279 (673)
144 KOG0307 Vesicle coat complex C 99.6 2.1E-15 4.6E-20 188.5 12.1 238 1070-1348 65-326 (1049)
145 COG2319 FOG: WD40 repeat [Gene 99.6 4.7E-12 1E-16 144.6 37.9 281 1060-1348 146-441 (466)
146 KOG1538 Uncharacterized conser 99.6 5.2E-14 1.1E-18 165.8 21.7 265 1071-1348 14-292 (1081)
147 KOG0322 G-protein beta subunit 99.6 1.2E-14 2.6E-19 157.4 14.9 276 1065-1348 10-322 (323)
148 KOG4283 Transcription-coupled 99.6 1.2E-13 2.6E-18 151.3 21.9 201 1108-1314 40-280 (397)
149 KOG2048 WD40 repeat protein [G 99.6 8.9E-13 1.9E-17 157.6 29.6 234 1067-1311 67-320 (691)
150 KOG1063 RNA polymerase II elon 99.6 3.4E-13 7.3E-18 161.1 25.9 285 1061-1348 46-390 (764)
151 KOG4378 Nuclear protein COP1 [ 99.6 7.4E-14 1.6E-18 160.9 19.4 251 1071-1330 36-302 (673)
152 KOG1188 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 154.3 19.8 260 1080-1347 41-344 (376)
153 KOG0639 Transducin-like enhanc 99.6 3.5E-14 7.6E-19 163.6 15.7 231 1069-1309 465-703 (705)
154 COG2319 FOG: WD40 repeat [Gene 99.5 2E-11 4.3E-16 139.5 36.8 276 1065-1348 61-358 (466)
155 KOG4328 WD40 protein [Function 99.5 3.4E-13 7.4E-18 155.2 21.7 239 1105-1348 180-449 (498)
156 KOG1034 Transcriptional repres 99.5 1.1E-13 2.3E-18 153.9 16.6 262 1066-1349 86-383 (385)
157 KOG0644 Uncharacterized conser 99.5 2.1E-14 4.6E-19 173.1 11.5 266 1064-1346 185-465 (1113)
158 KOG1007 WD repeat protein TSSC 99.5 7.5E-13 1.6E-17 144.9 21.0 247 1063-1345 57-357 (370)
159 KOG0270 WD40 repeat-containing 99.5 1.3E-13 2.9E-18 158.2 15.9 206 1065-1315 239-454 (463)
160 KOG1517 Guanine nucleotide bin 99.5 9.2E-13 2E-17 162.5 22.4 256 1053-1312 1090-1383(1387)
161 KOG1517 Guanine nucleotide bin 99.5 1.3E-12 2.9E-17 161.1 23.7 270 1070-1348 1065-1380(1387)
162 KOG1240 Protein kinase contain 99.5 3.3E-12 7.1E-17 160.0 27.2 253 1051-1310 1031-1334(1431)
163 PRK11028 6-phosphogluconolacto 99.5 2.2E-11 4.7E-16 142.5 32.8 265 1082-1347 5-302 (330)
164 KOG1587 Cytoplasmic dynein int 99.5 3.3E-12 7.2E-17 156.7 26.0 257 1089-1348 222-515 (555)
165 KOG2919 Guanine nucleotide-bin 99.5 1.4E-12 3E-17 144.7 20.3 235 1114-1348 52-326 (406)
166 KOG0650 WD40 repeat nucleolar 99.5 1E-12 2.2E-17 154.7 19.5 233 1104-1346 393-677 (733)
167 KOG0302 Ribosome Assembly prot 99.5 8.9E-13 1.9E-17 148.7 17.8 214 1107-1348 147-377 (440)
168 KOG2055 WD40 repeat protein [G 99.5 1.1E-12 2.5E-17 151.0 18.7 241 1068-1310 256-512 (514)
169 KOG0290 Conserved WD40 repeat- 99.5 4E-12 8.6E-17 139.6 20.2 263 1071-1340 46-357 (364)
170 KOG0649 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 133.3 22.6 224 1113-1347 12-272 (325)
171 KOG0649 WD40 repeat protein [G 99.4 1.3E-11 2.8E-16 132.7 22.9 256 1079-1346 22-313 (325)
172 KOG1334 WD40 repeat protein [G 99.4 5.7E-13 1.2E-17 154.1 13.5 282 1065-1349 138-466 (559)
173 KOG4227 WD40 repeat protein [G 99.4 1.3E-11 2.8E-16 139.0 22.7 281 1065-1348 52-386 (609)
174 KOG2110 Uncharacterized conser 99.4 3.8E-11 8.2E-16 135.9 26.3 231 1111-1347 5-246 (391)
175 KOG1188 WD40 repeat protein [G 99.4 4.2E-12 9.1E-17 142.2 17.8 257 1052-1309 50-345 (376)
176 KOG1009 Chromatin assembly com 99.4 6.5E-11 1.4E-15 135.2 25.7 276 1069-1345 13-368 (434)
177 KOG2919 Guanine nucleotide-bin 99.4 2.8E-11 6E-16 134.6 21.3 254 1071-1332 51-351 (406)
178 KOG0303 Actin-binding protein 99.4 1.3E-11 2.8E-16 140.1 18.8 222 1064-1291 76-320 (472)
179 KOG2445 Nuclear pore complex c 99.4 9.9E-11 2.2E-15 129.7 24.4 240 1051-1326 46-337 (361)
180 KOG1034 Transcriptional repres 99.4 7.9E-12 1.7E-16 139.3 15.6 213 1052-1267 118-382 (385)
181 KOG1240 Protein kinase contain 99.4 8.4E-11 1.8E-15 147.8 26.3 247 1094-1348 1034-1333(1431)
182 KOG1445 Tumor-specific antigen 99.4 2.3E-11 4.9E-16 143.4 20.0 112 1237-1348 627-749 (1012)
183 KOG0642 Cell-cycle nuclear pro 99.4 7E-12 1.5E-16 147.7 15.6 239 1105-1348 288-560 (577)
184 KOG1273 WD40 repeat protein [G 99.4 5.4E-11 1.2E-15 131.9 21.3 253 1054-1310 50-322 (405)
185 KOG1587 Cytoplasmic dynein int 99.3 4.9E-11 1.1E-15 146.6 22.7 240 1066-1311 239-517 (555)
186 KOG1009 Chromatin assembly com 99.3 1.3E-10 2.9E-15 132.7 20.0 241 1064-1313 60-375 (434)
187 KOG1963 WD40 repeat protein [G 99.3 1.1E-09 2.4E-14 135.2 28.3 282 1065-1348 201-537 (792)
188 KOG1272 WD40-repeat-containing 99.3 1.4E-11 3.1E-16 142.0 11.3 225 1114-1347 132-360 (545)
189 KOG0644 Uncharacterized conser 99.3 5.1E-12 1.1E-16 153.0 7.4 240 1061-1315 224-473 (1113)
190 KOG0307 Vesicle coat complex C 99.3 1.4E-11 3E-16 154.9 11.2 207 1063-1313 110-330 (1049)
191 PRK11028 6-phosphogluconolacto 99.3 3E-09 6.4E-14 124.6 30.2 258 1069-1329 34-327 (330)
192 KOG3881 Uncharacterized conser 99.2 2E-10 4.4E-15 130.9 18.7 253 1069-1330 55-340 (412)
193 KOG1310 WD40 repeat protein [G 99.2 5.9E-11 1.3E-15 138.7 14.6 233 1064-1318 45-311 (758)
194 KOG1538 Uncharacterized conser 99.2 1.1E-10 2.4E-15 138.4 16.9 229 1062-1309 46-292 (1081)
195 PRK01742 tolB translocation pr 99.2 3.8E-10 8.3E-15 137.3 22.5 228 1088-1331 183-425 (429)
196 KOG1445 Tumor-specific antigen 99.2 5.2E-11 1.1E-15 140.4 12.6 178 1170-1347 599-796 (1012)
197 KOG1523 Actin-related protein 99.2 7.7E-10 1.7E-14 123.5 20.3 228 1069-1329 10-257 (361)
198 KOG1007 WD repeat protein TSSC 99.2 5.9E-10 1.3E-14 122.6 18.1 216 1131-1348 38-288 (370)
199 KOG0771 Prolactin regulatory e 99.2 2.2E-10 4.8E-15 131.8 15.5 201 1073-1310 148-354 (398)
200 KOG2111 Uncharacterized conser 99.2 5.1E-09 1.1E-13 117.0 25.1 228 1113-1348 7-255 (346)
201 KOG0303 Actin-binding protein 99.2 3.5E-10 7.6E-15 128.6 15.1 154 1194-1348 84-248 (472)
202 KOG4227 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 123.8 18.5 241 1104-1348 49-321 (609)
203 KOG1963 WD40 repeat protein [G 99.1 8.7E-09 1.9E-13 127.4 26.9 274 1069-1347 15-320 (792)
204 KOG2394 WD40 protein DMR-N9 [G 99.1 1.8E-09 3.9E-14 126.8 18.7 216 1113-1330 125-383 (636)
205 KOG1334 WD40 repeat protein [G 99.1 5.7E-10 1.2E-14 129.8 13.7 242 1104-1348 135-423 (559)
206 KOG1524 WD40 repeat-containing 99.1 3.3E-09 7.2E-14 124.1 19.6 252 1067-1345 12-282 (737)
207 KOG2110 Uncharacterized conser 99.0 4E-08 8.7E-13 111.8 24.8 228 1069-1310 5-248 (391)
208 KOG1524 WD40 repeat-containing 99.0 4.2E-09 9.1E-14 123.3 17.1 226 1109-1344 12-250 (737)
209 KOG2321 WD40 repeat protein [G 99.0 1E-08 2.2E-13 121.3 20.0 230 1109-1348 49-301 (703)
210 PRK03629 tolB translocation pr 99.0 7E-08 1.5E-12 117.7 28.4 230 1089-1331 179-427 (429)
211 KOG0290 Conserved WD40 repeat- 99.0 2.9E-08 6.2E-13 109.8 20.3 182 1066-1248 147-346 (364)
212 KOG4497 Uncharacterized conser 99.0 1.1E-07 2.4E-12 106.5 24.8 270 1070-1342 49-425 (447)
213 KOG2111 Uncharacterized conser 99.0 5.9E-08 1.3E-12 108.7 22.8 230 1072-1311 8-257 (346)
214 PRK04922 tolB translocation pr 99.0 5.1E-08 1.1E-12 119.0 24.6 228 1089-1331 184-432 (433)
215 PRK01742 tolB translocation pr 99.0 2.7E-08 5.8E-13 121.3 21.9 211 1065-1291 199-426 (429)
216 PRK05137 tolB translocation pr 99.0 1.5E-07 3.3E-12 114.9 28.3 228 1089-1331 182-432 (435)
217 KOG0322 G-protein beta subunit 99.0 4.6E-09 9.9E-14 114.7 13.1 241 1104-1348 7-280 (323)
218 TIGR03300 assembly_YfgL outer 99.0 3E-07 6.5E-12 109.9 29.1 255 1075-1346 101-376 (377)
219 PF02239 Cytochrom_D1: Cytochr 98.9 5.4E-07 1.2E-11 107.7 30.5 259 1082-1348 9-346 (369)
220 KOG2321 WD40 repeat protein [G 98.9 1.7E-07 3.7E-12 111.2 24.5 272 1066-1346 48-340 (703)
221 KOG3881 Uncharacterized conser 98.9 8.7E-08 1.9E-12 109.8 19.6 230 1110-1348 54-319 (412)
222 PRK02889 tolB translocation pr 98.9 2.9E-07 6.2E-12 112.3 25.1 230 1089-1331 176-424 (427)
223 KOG1354 Serine/threonine prote 98.8 6.9E-08 1.5E-12 108.8 17.1 268 1069-1347 25-357 (433)
224 KOG0771 Prolactin regulatory e 98.8 6E-08 1.3E-12 112.2 16.7 186 1156-1346 148-351 (398)
225 TIGR03300 assembly_YfgL outer 98.8 1.3E-06 2.8E-11 104.5 28.8 261 1074-1348 60-337 (377)
226 KOG1310 WD40 repeat protein [G 98.8 1.3E-08 2.9E-13 119.5 10.9 165 1104-1268 43-231 (758)
227 KOG2041 WD40 repeat protein [G 98.8 2E-07 4.4E-12 112.0 20.3 275 1068-1345 13-333 (1189)
228 PRK04922 tolB translocation pr 98.8 6.4E-07 1.4E-11 109.4 25.6 204 1133-1347 184-409 (433)
229 PF10282 Lactonase: Lactonase, 98.8 1E-05 2.3E-10 95.9 35.1 262 1082-1347 2-320 (345)
230 KOG1064 RAVE (regulator of V-A 98.7 3.7E-08 8E-13 127.8 12.2 210 1082-1348 2183-2397(2439)
231 PF02239 Cytochrom_D1: Cytochr 98.7 4.2E-06 9.1E-11 100.2 28.9 244 1073-1320 40-357 (369)
232 TIGR02800 propeller_TolB tol-p 98.7 2.2E-06 4.7E-11 103.6 26.7 205 1088-1341 169-386 (417)
233 KOG0974 WD-repeat protein WDR6 98.7 4.4E-07 9.6E-12 114.3 20.6 260 1068-1348 6-287 (967)
234 KOG2139 WD40 repeat protein [G 98.7 3.8E-07 8.2E-12 103.6 17.5 193 1112-1335 99-296 (445)
235 PF10282 Lactonase: Lactonase, 98.7 5E-05 1.1E-09 90.2 36.2 258 1071-1329 38-345 (345)
236 PRK03629 tolB translocation pr 98.7 2.1E-06 4.5E-11 104.9 24.7 211 1066-1290 195-427 (429)
237 KOG4547 WD40 repeat-containing 98.7 2.3E-06 4.9E-11 102.9 23.9 182 1081-1310 7-220 (541)
238 KOG2315 Predicted translation 98.7 5.8E-06 1.3E-10 98.8 26.2 262 1071-1347 36-388 (566)
239 KOG4190 Uncharacterized conser 98.7 7.3E-08 1.6E-12 112.7 9.9 218 1062-1319 728-957 (1034)
240 PF08662 eIF2A: Eukaryotic tra 98.6 1.7E-06 3.7E-11 94.5 19.8 114 1193-1318 61-186 (194)
241 KOG0974 WD-repeat protein WDR6 98.6 5.1E-07 1.1E-11 113.7 17.7 138 1081-1220 147-289 (967)
242 PRK00178 tolB translocation pr 98.6 8.2E-06 1.8E-10 99.5 27.9 229 1090-1331 180-427 (430)
243 KOG4547 WD40 repeat-containing 98.6 7.7E-07 1.7E-11 106.8 18.2 204 1121-1346 3-217 (541)
244 TIGR02658 TTQ_MADH_Hv methylam 98.6 5E-05 1.1E-09 89.9 33.0 253 1089-1348 27-329 (352)
245 PRK11138 outer membrane biogen 98.6 1.2E-05 2.7E-10 96.9 28.3 256 1075-1348 116-393 (394)
246 KOG1409 Uncharacterized conser 98.6 1.4E-06 3E-11 98.6 18.1 238 1065-1309 20-269 (404)
247 PRK05137 tolB translocation pr 98.6 1.2E-05 2.5E-10 98.4 27.6 196 1133-1339 182-396 (435)
248 KOG1064 RAVE (regulator of V-A 98.6 1.4E-07 3E-12 122.7 11.0 224 1066-1342 2205-2439(2439)
249 KOG2139 WD40 repeat protein [G 98.6 1.1E-05 2.3E-10 92.1 24.6 266 1071-1347 100-429 (445)
250 PRK04792 tolB translocation pr 98.6 1.7E-05 3.7E-10 97.5 27.2 229 1090-1331 199-446 (448)
251 KOG2394 WD40 protein DMR-N9 [G 98.5 1.6E-06 3.5E-11 102.6 17.0 188 1081-1290 187-384 (636)
252 KOG1523 Actin-related protein 98.5 2.1E-06 4.6E-11 96.5 17.2 197 1110-1348 9-235 (361)
253 PRK02889 tolB translocation pr 98.5 1.6E-05 3.5E-10 97.1 26.4 198 1133-1341 176-392 (427)
254 KOG4497 Uncharacterized conser 98.5 5.3E-06 1.2E-10 93.3 19.2 256 1079-1348 20-390 (447)
255 COG5170 CDC55 Serine/threonine 98.5 8.8E-07 1.9E-11 98.7 12.1 266 1068-1346 25-364 (460)
256 KOG1409 Uncharacterized conser 98.5 5.4E-06 1.2E-10 94.0 18.1 239 1099-1348 12-269 (404)
257 PF08662 eIF2A: Eukaryotic tra 98.5 4.7E-06 1E-10 91.0 17.0 108 1237-1348 59-178 (194)
258 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00015 3.3E-09 85.8 30.5 225 1087-1319 75-339 (352)
259 KOG1272 WD40-repeat-containing 98.4 1.4E-07 3E-12 109.8 4.5 181 1159-1348 136-322 (545)
260 PF04762 IKI3: IKI3 family; I 98.4 7.9E-05 1.7E-09 98.5 30.4 272 1068-1347 74-454 (928)
261 KOG0280 Uncharacterized conser 98.4 4.4E-06 9.4E-11 93.2 14.8 149 1074-1222 126-287 (339)
262 PRK01029 tolB translocation pr 98.4 9.3E-05 2E-09 90.5 27.9 233 1089-1330 165-423 (428)
263 TIGR02800 propeller_TolB tol-p 98.4 4.3E-05 9.3E-10 92.3 23.6 204 1067-1319 187-405 (417)
264 PLN02919 haloacid dehalogenase 98.4 0.00021 4.5E-09 96.1 32.0 250 1074-1348 572-887 (1057)
265 KOG4714 Nucleoporin [Nuclear s 98.3 5.6E-06 1.2E-10 91.0 13.3 226 1114-1348 39-317 (319)
266 COG2706 3-carboxymuconate cycl 98.3 0.00058 1.2E-08 78.9 29.8 255 1088-1346 15-318 (346)
267 COG2706 3-carboxymuconate cycl 98.3 0.00099 2.1E-08 77.0 30.4 263 1066-1329 36-344 (346)
268 PF13360 PQQ_2: PQQ-like domai 98.3 0.00033 7E-09 77.7 26.2 217 1087-1317 1-237 (238)
269 KOG2041 WD40 repeat protein [G 98.3 1.9E-05 4.1E-10 95.7 16.8 237 1063-1308 65-335 (1189)
270 PRK11138 outer membrane biogen 98.2 0.00024 5.1E-09 85.9 26.4 259 1076-1348 66-352 (394)
271 PF13360 PQQ_2: PQQ-like domai 98.2 0.00039 8.3E-09 77.1 25.5 211 1131-1348 1-229 (238)
272 PRK04792 tolB translocation pr 98.2 0.00014 3.1E-09 89.5 23.4 210 1067-1290 215-446 (448)
273 PRK00178 tolB translocation pr 98.2 0.00021 4.5E-09 87.2 23.9 211 1066-1290 195-427 (430)
274 KOG0309 Conserved WD40 repeat- 98.1 9E-06 1.9E-10 98.9 9.5 212 1064-1311 109-340 (1081)
275 COG5354 Uncharacterized protei 98.1 0.00045 9.7E-09 82.3 22.9 266 1068-1348 31-394 (561)
276 KOG4190 Uncharacterized conser 98.0 5.5E-06 1.2E-10 97.5 6.4 202 1103-1347 727-946 (1034)
277 KOG0280 Uncharacterized conser 98.0 0.00031 6.8E-09 78.8 19.1 125 1202-1330 134-262 (339)
278 KOG2315 Predicted translation 98.0 0.00043 9.3E-09 83.3 21.4 228 1073-1315 129-394 (566)
279 PF00400 WD40: WD domain, G-be 98.0 1.7E-05 3.8E-10 63.0 6.8 37 1103-1139 3-39 (39)
280 KOG1912 WD40 repeat protein [G 98.0 0.00066 1.4E-08 83.8 22.1 142 1032-1178 20-182 (1062)
281 KOG0882 Cyclophilin-related pe 97.9 0.00012 2.7E-09 85.6 14.6 251 1067-1319 7-314 (558)
282 KOG4532 WD40-like repeat conta 97.9 0.00086 1.9E-08 74.5 20.3 229 1079-1310 84-331 (344)
283 PF00400 WD40: WD domain, G-be 97.9 2.1E-05 4.6E-10 62.5 6.0 39 1270-1308 1-39 (39)
284 KOG0309 Conserved WD40 repeat- 97.9 9.2E-05 2E-09 90.5 13.0 269 1069-1347 24-337 (1081)
285 KOG2066 Vacuolar assembly/sort 97.9 0.0003 6.4E-09 87.6 17.5 182 1069-1268 39-233 (846)
286 COG4946 Uncharacterized protei 97.9 0.0076 1.7E-07 71.4 27.4 190 1119-1318 274-485 (668)
287 PF08450 SGL: SMP-30/Gluconola 97.9 0.0092 2E-07 67.2 28.0 209 1116-1337 4-243 (246)
288 KOG3914 WD repeat protein WDR4 97.9 0.00014 3.1E-09 84.5 13.3 167 1114-1319 65-232 (390)
289 KOG3914 WD repeat protein WDR4 97.8 0.00012 2.6E-09 85.0 12.2 93 1255-1348 127-222 (390)
290 PF15492 Nbas_N: Neuroblastoma 97.8 0.0039 8.5E-08 70.4 23.5 222 1078-1319 7-268 (282)
291 KOG2695 WD40 repeat protein [G 97.8 4.9E-05 1.1E-09 86.5 8.6 160 1168-1330 228-401 (425)
292 KOG1920 IkappaB kinase complex 97.8 0.0041 8.8E-08 80.8 26.5 228 1069-1313 68-325 (1265)
293 PRK01029 tolB translocation pr 97.8 0.0027 5.9E-08 77.8 24.5 211 1133-1348 165-402 (428)
294 PLN02919 haloacid dehalogenase 97.8 0.0033 7.1E-08 84.9 26.4 216 1071-1314 625-892 (1057)
295 PRK04043 tolB translocation pr 97.8 0.011 2.3E-07 72.5 28.3 188 1113-1311 189-401 (419)
296 KOG1832 HIV-1 Vpr-binding prot 97.7 2.4E-05 5.2E-10 96.6 4.7 201 1103-1319 1093-1300(1516)
297 PLN03200 cellulose synthase-in 97.7 0.0007 1.5E-08 93.7 18.5 302 554-876 425-767 (2102)
298 KOG2314 Translation initiation 97.7 0.0039 8.4E-08 75.1 21.6 256 1073-1342 214-560 (698)
299 KOG1354 Serine/threonine prote 97.7 0.00042 9.2E-09 79.0 13.1 204 1069-1312 84-361 (433)
300 KOG2114 Vacuolar assembly/sort 97.7 0.01 2.2E-07 74.9 25.6 216 1071-1319 27-252 (933)
301 COG4946 Uncharacterized protei 97.6 0.047 1E-06 65.0 29.3 302 1033-1348 133-476 (668)
302 PF04762 IKI3: IKI3 family; I 97.6 0.013 2.9E-07 77.9 28.3 268 1071-1347 23-331 (928)
303 KOG1275 PAB-dependent poly(A) 97.6 0.0011 2.4E-08 83.3 16.6 188 1081-1308 149-340 (1118)
304 KOG4532 WD40-like repeat conta 97.6 0.0044 9.4E-08 69.1 19.4 222 1087-1319 50-291 (344)
305 KOG4714 Nucleoporin [Nuclear s 97.6 0.00067 1.5E-08 75.1 12.5 192 1072-1269 39-255 (319)
306 PF00780 CNH: CNH domain; Int 97.6 0.04 8.7E-07 62.9 27.8 229 1078-1322 6-267 (275)
307 COG5354 Uncharacterized protei 97.5 0.011 2.4E-07 70.9 22.1 246 1052-1312 111-397 (561)
308 cd00216 PQQ_DH Dehydrogenases 97.5 0.028 6.2E-07 70.1 26.8 264 1077-1348 59-423 (488)
309 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00026 5.7E-09 87.9 7.7 244 1063-1330 1095-1368(1516)
310 PF07433 DUF1513: Protein of u 97.4 0.062 1.3E-06 62.4 26.5 208 1082-1299 20-275 (305)
311 cd00216 PQQ_DH Dehydrogenases 97.4 0.043 9.3E-07 68.6 26.3 236 1076-1324 106-438 (488)
312 KOG3617 WD40 and TPR repeat-co 97.3 0.0068 1.5E-07 75.6 18.3 107 1032-1141 20-131 (1416)
313 KOG2695 WD40 repeat protein [G 97.3 0.00034 7.3E-09 79.9 6.9 139 1080-1223 225-380 (425)
314 KOG1912 WD40 repeat protein [G 97.3 0.0072 1.6E-07 75.1 18.4 236 1069-1311 15-305 (1062)
315 KOG1645 RING-finger-containing 97.3 0.0069 1.5E-07 70.8 17.4 247 1091-1347 175-459 (463)
316 PF08450 SGL: SMP-30/Gluconola 97.3 0.23 4.9E-06 56.0 29.7 214 1074-1298 4-243 (246)
317 KOG3621 WD40 repeat-containing 97.3 0.03 6.5E-07 69.7 23.5 266 1071-1346 37-350 (726)
318 PF06433 Me-amine-dh_H: Methyl 97.3 0.12 2.7E-06 60.7 26.7 253 1089-1349 17-320 (342)
319 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.17 3.7E-06 56.7 25.6 260 1070-1348 53-350 (354)
320 PRK04043 tolB translocation pr 97.1 0.075 1.6E-06 65.2 24.7 187 1071-1269 189-401 (419)
321 PLN03200 cellulose synthase-in 97.1 0.018 4E-07 80.4 21.0 285 574-882 563-870 (2102)
322 PF07433 DUF1513: Protein of u 97.1 0.18 4E-06 58.6 25.6 219 1114-1339 7-276 (305)
323 KOG2066 Vacuolar assembly/sort 97.1 0.018 3.9E-07 72.3 18.3 136 1080-1221 84-235 (846)
324 KOG1645 RING-finger-containing 97.0 0.022 4.9E-07 66.7 17.4 232 1064-1310 188-461 (463)
325 COG5170 CDC55 Serine/threonine 96.9 0.0083 1.8E-07 67.9 12.1 232 1111-1348 26-308 (460)
326 PF04841 Vps16_N: Vps16, N-ter 96.9 0.15 3.2E-06 62.4 24.0 53 1280-1332 216-270 (410)
327 KOG1275 PAB-dependent poly(A) 96.9 0.0054 1.2E-07 77.4 11.5 144 1071-1218 179-341 (1118)
328 KOG1920 IkappaB kinase complex 96.8 0.068 1.5E-06 70.1 21.1 230 1111-1347 68-320 (1265)
329 PF03178 CPSF_A: CPSF A subuni 96.8 0.35 7.5E-06 56.9 25.9 213 1089-1347 2-263 (321)
330 PF15492 Nbas_N: Neuroblastoma 96.8 0.16 3.4E-06 57.9 21.2 218 1117-1348 3-258 (282)
331 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.55 1.2E-05 52.8 24.8 137 1081-1221 25-167 (354)
332 KOG2114 Vacuolar assembly/sort 96.8 0.073 1.6E-06 67.6 20.0 191 1156-1348 27-242 (933)
333 KOG0882 Cyclophilin-related pe 96.7 0.0077 1.7E-07 71.1 10.5 203 1110-1318 8-239 (558)
334 PF08596 Lgl_C: Lethal giant l 96.7 0.41 8.8E-06 58.3 25.7 223 1113-1338 3-325 (395)
335 PF06433 Me-amine-dh_H: Methyl 96.7 0.25 5.5E-06 58.2 22.5 230 1088-1320 66-330 (342)
336 PF11768 DUF3312: Protein of u 96.5 0.029 6.3E-07 68.9 13.7 76 1066-1145 256-333 (545)
337 PF11768 DUF3312: Protein of u 96.5 1.8 3.9E-05 53.9 28.7 85 1262-1348 238-328 (545)
338 smart00320 WD40 WD40 repeats. 96.4 0.0078 1.7E-07 44.6 5.6 37 1103-1139 4-40 (40)
339 PRK02888 nitrous-oxide reducta 96.4 0.34 7.3E-06 61.2 22.6 89 1259-1348 295-403 (635)
340 PF08553 VID27: VID27 cytoplas 96.4 0.051 1.1E-06 70.4 15.9 136 1124-1267 494-646 (794)
341 KOG4441 Proteins containing BT 96.3 1.7 3.8E-05 55.5 29.0 197 1071-1313 324-549 (571)
342 PRK02888 nitrous-oxide reducta 96.3 0.41 8.8E-06 60.5 22.3 183 1120-1311 201-405 (635)
343 smart00320 WD40 WD40 repeats. 96.3 0.0093 2E-07 44.2 5.2 38 1271-1308 3-40 (40)
344 PF04053 Coatomer_WDAD: Coatom 96.2 0.53 1.1E-05 58.1 22.7 218 1107-1347 28-260 (443)
345 KOG2314 Translation initiation 96.2 0.26 5.7E-06 60.0 18.9 225 1114-1346 213-475 (698)
346 PHA02713 hypothetical protein; 96.0 0.32 7E-06 61.9 19.9 219 1090-1319 273-542 (557)
347 KOG4441 Proteins containing BT 95.9 0.45 9.7E-06 60.7 20.7 211 1133-1348 301-545 (571)
348 KOG2395 Protein involved in va 95.9 0.3 6.4E-06 59.5 17.6 138 1122-1267 344-499 (644)
349 KOG1008 Uncharacterized conser 95.9 0.0051 1.1E-07 75.3 3.1 199 1069-1268 56-275 (783)
350 PHA02713 hypothetical protein; 95.8 0.34 7.4E-06 61.6 19.4 210 1134-1348 273-532 (557)
351 PF04053 Coatomer_WDAD: Coatom 95.7 0.79 1.7E-05 56.6 21.1 166 1160-1345 40-219 (443)
352 PF00780 CNH: CNH domain; Int 95.7 3.3 7.1E-05 47.3 24.9 213 1121-1348 5-254 (275)
353 KOG3617 WD40 and TPR repeat-co 95.6 0.14 3.1E-06 64.5 14.0 91 1087-1182 39-131 (1416)
354 PF04841 Vps16_N: Vps16, N-ter 95.6 8.3 0.00018 47.4 30.8 187 1090-1293 62-272 (410)
355 PF08596 Lgl_C: Lethal giant l 95.6 0.43 9.4E-06 58.1 18.1 210 1068-1300 85-326 (395)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 4.1 9E-05 51.6 26.5 72 1075-1149 116-197 (527)
357 COG3386 Gluconolactonase [Carb 95.3 2.5 5.5E-05 49.8 22.3 201 1118-1331 31-264 (307)
358 PF14783 BBS2_Mid: Ciliary BBS 95.1 0.72 1.6E-05 46.1 14.3 97 1114-1214 2-109 (111)
359 KOG3621 WD40 repeat-containing 95.1 1.4 3E-05 55.6 19.9 103 1070-1172 77-188 (726)
360 KOG2079 Vacuolar assembly/sort 95.1 0.22 4.8E-06 64.8 13.5 109 1069-1181 89-202 (1206)
361 PF03178 CPSF_A: CPSF A subuni 95.0 0.81 1.8E-05 53.8 17.5 128 1089-1220 62-203 (321)
362 PF06977 SdiA-regulated: SdiA- 94.9 9.2 0.0002 43.8 25.1 200 1105-1307 15-247 (248)
363 KOG4640 Anaphase-promoting com 94.9 0.11 2.5E-06 64.1 10.0 75 1070-1147 21-98 (665)
364 KOG4640 Anaphase-promoting com 94.8 0.13 2.8E-06 63.6 10.3 93 1237-1331 20-115 (665)
365 KOG2444 WD40 repeat protein [G 94.6 0.06 1.3E-06 59.5 6.1 141 1166-1312 32-179 (238)
366 PRK13616 lipoprotein LpqB; Pro 94.3 4.6 0.0001 51.8 22.8 196 1109-1345 347-564 (591)
367 PF00930 DPPIV_N: Dipeptidyl p 94.2 3.2 6.9E-05 49.7 20.2 238 1088-1339 22-301 (353)
368 KOG1897 Damage-specific DNA bi 94.1 19 0.00042 47.5 27.2 273 1067-1347 528-854 (1096)
369 PF05804 KAP: Kinesin-associat 93.9 1 2.2E-05 58.5 15.8 331 576-930 124-501 (708)
370 COG0823 TolB Periplasmic compo 93.5 1.2 2.7E-05 54.7 15.3 130 1089-1221 218-360 (425)
371 PF14783 BBS2_Mid: Ciliary BBS 93.5 2.2 4.7E-05 42.8 14.0 96 1072-1177 2-109 (111)
372 PHA03098 kelch-like protein; P 93.5 2.9 6.3E-05 52.8 19.2 97 1211-1314 406-515 (534)
373 COG3490 Uncharacterized protei 93.5 4.2 9E-05 46.8 17.7 205 1092-1308 94-346 (366)
374 TIGR03074 PQQ_membr_DH membran 93.5 9.9 0.00022 50.3 24.1 60 1260-1319 414-486 (764)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 6.1 0.00013 50.2 21.4 193 1123-1315 69-338 (527)
376 KOG1008 Uncharacterized conser 93.2 0.038 8.3E-07 68.0 1.5 191 1111-1310 56-275 (783)
377 COG0823 TolB Periplasmic compo 93.2 7.4 0.00016 48.0 21.1 182 1110-1299 191-388 (425)
378 COG3391 Uncharacterized conser 93.1 24 0.00053 42.8 25.4 205 1113-1320 75-293 (381)
379 PF01602 Adaptin_N: Adaptin N 93.1 3.1 6.8E-05 52.1 18.4 179 574-783 113-298 (526)
380 PF05096 Glu_cyclase_2: Glutam 93.0 17 0.00036 42.0 22.0 192 1104-1299 36-249 (264)
381 PF05804 KAP: Kinesin-associat 92.7 3.7 7.9E-05 53.5 18.1 335 587-964 260-608 (708)
382 COG3391 Uncharacterized conser 92.1 29 0.00064 42.1 24.2 211 1073-1292 77-310 (381)
383 KOG2444 WD40 repeat protein [G 91.5 0.22 4.8E-06 55.2 4.6 97 1126-1223 33-136 (238)
384 PF02897 Peptidase_S9_N: Proly 91.5 41 0.00088 41.0 24.9 205 1113-1347 125-355 (414)
385 PF08553 VID27: VID27 cytoplas 91.2 1.9 4.2E-05 56.4 13.4 103 1202-1308 543-645 (794)
386 KOG2395 Protein involved in va 91.0 2.4 5.1E-05 52.1 12.7 135 1082-1219 349-500 (644)
387 PHA03098 kelch-like protein; P 90.9 7 0.00015 49.4 17.9 145 1199-1348 340-510 (534)
388 PF14727 PHTB1_N: PTHB1 N-term 90.7 51 0.0011 40.7 32.4 258 1081-1345 39-356 (418)
389 COG3386 Gluconolactonase [Carb 90.6 43 0.00093 39.7 22.9 211 1081-1299 39-274 (307)
390 PF02897 Peptidase_S9_N: Proly 90.5 49 0.0011 40.3 28.1 236 1074-1315 128-409 (414)
391 COG5276 Uncharacterized conser 90.3 42 0.00092 39.2 27.5 151 1069-1222 86-244 (370)
392 KOG2079 Vacuolar assembly/sort 90.3 0.9 1.9E-05 59.5 9.0 89 1258-1348 107-202 (1206)
393 KOG2280 Vacuolar assembly/sort 89.2 13 0.00028 47.9 17.4 180 1132-1319 63-255 (829)
394 PF12234 Rav1p_C: RAVE protein 89.2 9.4 0.0002 49.1 16.7 70 1112-1181 30-103 (631)
395 PRK13800 putative oxidoreducta 89.0 12 0.00026 50.6 18.8 142 703-869 735-895 (897)
396 PHA02790 Kelch-like protein; P 89.0 13 0.00029 46.5 18.0 179 1081-1270 274-472 (480)
397 PHA02790 Kelch-like protein; P 88.6 15 0.00033 46.0 18.2 168 1134-1313 288-473 (480)
398 PF12894 Apc4_WD40: Anaphase-p 87.8 1.3 2.8E-05 37.5 5.4 35 1280-1315 11-45 (47)
399 COG3490 Uncharacterized protei 87.8 62 0.0013 37.7 21.3 259 1070-1346 35-345 (366)
400 PF10508 Proteasom_PSMB: Prote 87.7 17 0.00036 46.0 17.6 205 651-882 117-326 (503)
401 PF12894 Apc4_WD40: Anaphase-p 87.3 1.5 3.3E-05 37.2 5.5 33 1111-1144 11-43 (47)
402 KOG4499 Ca2+-binding protein R 86.8 62 0.0013 36.8 19.2 204 1081-1290 29-263 (310)
403 PF01602 Adaptin_N: Adaptin N 86.6 97 0.0021 38.8 24.0 219 523-781 108-333 (526)
404 PF14583 Pectate_lyase22: Olig 86.5 88 0.0019 38.2 22.3 216 1118-1340 42-303 (386)
405 PF14761 HPS3_N: Hermansky-Pud 86.3 44 0.00095 37.5 17.6 58 1080-1138 29-92 (215)
406 COG5276 Uncharacterized conser 86.0 77 0.0017 37.1 24.7 231 1070-1309 129-368 (370)
407 PF05096 Glu_cyclase_2: Glutam 85.7 13 0.00029 42.8 13.8 109 1239-1348 46-156 (264)
408 KOG3036 Protein involved in ce 85.5 2.4 5.2E-05 47.7 7.5 137 573-752 121-286 (293)
409 PF12234 Rav1p_C: RAVE protein 85.2 20 0.00044 46.1 16.4 60 1080-1140 41-103 (631)
410 KOG1897 Damage-specific DNA bi 84.6 1.6E+02 0.0035 39.6 26.4 259 1079-1345 595-894 (1096)
411 KOG4499 Ca2+-binding protein R 84.3 81 0.0018 35.8 20.1 48 1285-1332 216-264 (310)
412 cd00020 ARM Armadillo/beta-cat 83.7 5.8 0.00013 38.5 8.8 118 648-780 2-119 (120)
413 KOG2280 Vacuolar assembly/sort 83.3 50 0.0011 42.8 18.2 198 1069-1277 43-255 (829)
414 KOG1916 Nuclear protein, conta 83.1 1.2 2.5E-05 57.3 4.3 92 1255-1348 200-322 (1283)
415 KOG1983 Tomosyn and related SN 83.1 16 0.00035 49.7 15.2 234 1059-1314 27-268 (993)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 82.4 32 0.0007 42.4 16.0 83 1237-1320 307-408 (415)
417 PRK09687 putative lyase; Provi 82.1 39 0.00084 39.5 16.0 126 704-869 153-278 (280)
418 KOG2171 Karyopherin (importin) 82.1 40 0.00087 45.5 17.5 267 579-871 118-459 (1075)
419 COG3292 Predicted periplasmic 82.1 40 0.00086 42.5 16.3 263 1069-1345 164-443 (671)
420 KOG2160 Armadillo/beta-catenin 81.4 17 0.00038 43.2 12.7 192 675-879 95-288 (342)
421 COG3204 Uncharacterized protei 81.3 1.2E+02 0.0026 35.7 20.4 163 1107-1269 81-264 (316)
422 cd00256 VATPase_H VATPase_H, r 80.6 25 0.00053 43.5 14.2 263 573-871 141-423 (429)
423 KOG0166 Karyopherin (importin) 80.4 13 0.00029 46.4 11.8 263 533-817 157-472 (514)
424 PF10395 Utp8: Utp8 family; I 80.1 1.9E+02 0.0042 37.7 22.0 162 1111-1277 129-314 (670)
425 PF15390 DUF4613: Domain of un 78.7 75 0.0016 40.4 17.2 171 1070-1251 20-216 (671)
426 PF04826 Arm_2: Armadillo-like 78.4 78 0.0017 36.5 16.6 197 572-799 9-212 (254)
427 PRK09687 putative lyase; Provi 78.3 50 0.0011 38.6 15.3 96 753-872 24-119 (280)
428 PF07569 Hira: TUP1-like enhan 76.3 21 0.00045 40.1 11.1 75 1071-1146 14-100 (219)
429 COG1520 FOG: WD40-like repeat 76.1 1.8E+02 0.004 34.9 21.8 192 1125-1321 70-279 (370)
430 PF05536 Neurochondrin: Neuroc 75.9 56 0.0012 41.8 15.9 280 564-874 129-453 (543)
431 COG3823 Glutamine cyclotransfe 75.0 89 0.0019 35.0 14.7 169 1122-1298 55-247 (262)
432 KOG1916 Nuclear protein, conta 74.7 6.6 0.00014 51.0 7.0 213 1088-1308 110-372 (1283)
433 COG1520 FOG: WD40-like repeat 74.6 2E+02 0.0043 34.6 29.4 144 1076-1222 65-220 (370)
434 KOG2063 Vacuolar assembly/sort 74.3 57 0.0012 43.7 15.6 70 1074-1144 21-99 (877)
435 cd00020 ARM Armadillo/beta-cat 74.3 25 0.00054 34.0 10.0 75 709-783 6-80 (120)
436 PRK14131 N-acetylneuraminic ac 73.8 2.1E+02 0.0046 34.6 20.3 52 1289-1340 277-353 (376)
437 PF10508 Proteasom_PSMB: Prote 73.3 84 0.0018 39.8 16.6 81 703-784 112-192 (503)
438 KOG3630 Nuclear pore complex, 73.2 40 0.00088 45.4 13.6 124 1207-1332 120-254 (1405)
439 PRK13684 Ycf48-like protein; P 73.1 2.1E+02 0.0046 34.2 30.4 146 1193-1348 174-330 (334)
440 PF14870 PSII_BNR: Photosynthe 72.5 2.1E+02 0.0046 33.9 26.8 229 1071-1307 63-301 (302)
441 TIGR03074 PQQ_membr_DH membran 71.9 2.3E+02 0.005 37.9 20.5 70 1079-1151 260-354 (764)
442 KOG1900 Nuclear pore complex, 70.3 46 0.001 45.6 13.5 100 1115-1216 82-204 (1311)
443 PF08728 CRT10: CRT10; InterP 68.8 86 0.0019 41.2 15.1 116 1191-1309 100-245 (717)
444 TIGR03548 mutarot_permut cycli 68.2 1.9E+02 0.0042 33.9 17.3 108 1074-1183 68-195 (323)
445 PF11715 Nup160: Nucleoporin N 68.0 28 0.0006 44.3 10.8 71 1078-1148 157-255 (547)
446 smart00036 CNH Domain found in 67.8 2.5E+02 0.0055 33.0 29.4 227 1081-1320 15-280 (302)
447 TIGR03118 PEPCTERM_chp_1 conse 67.7 2.7E+02 0.0057 33.2 25.0 70 1259-1329 221-305 (336)
448 PF10168 Nup88: Nuclear pore c 66.8 3.4E+02 0.0075 36.1 20.3 25 1113-1137 86-110 (717)
449 PLN02153 epithiospecifier prot 66.3 2.8E+02 0.0061 32.9 23.2 67 1078-1146 32-114 (341)
450 PF07569 Hira: TUP1-like enhan 66.2 29 0.00062 39.1 9.3 33 1236-1270 65-97 (219)
451 PF13646 HEAT_2: HEAT repeats; 65.0 39 0.00086 31.2 8.7 85 755-868 2-87 (88)
452 TIGR03118 PEPCTERM_chp_1 conse 63.4 3.2E+02 0.0069 32.6 19.8 52 1296-1348 216-278 (336)
453 PF10647 Gmad1: Lipoprotein Lp 63.4 2.7E+02 0.006 31.8 19.9 183 1159-1344 30-233 (253)
454 KOG4224 Armadillo repeat prote 62.8 90 0.0019 37.5 12.3 199 582-802 173-392 (550)
455 PF00930 DPPIV_N: Dipeptidyl p 62.3 3.3E+02 0.007 32.7 17.9 157 1091-1254 160-344 (353)
456 PRK13684 Ycf48-like protein; P 61.8 3.4E+02 0.0074 32.4 23.4 110 1192-1308 215-329 (334)
457 PRK13616 lipoprotein LpqB; Pro 61.5 1.1E+02 0.0024 39.7 14.3 83 1261-1347 431-523 (591)
458 PTZ00429 beta-adaptin; Provisi 61.4 53 0.0012 43.5 11.7 140 706-873 132-285 (746)
459 KOG0166 Karyopherin (importin) 61.3 1.5E+02 0.0032 37.6 14.7 123 583-721 159-290 (514)
460 PF02333 Phytase: Phytase; In 61.3 3.9E+02 0.0084 32.8 22.0 185 1162-1348 66-289 (381)
461 PF05004 IFRD: Interferon-rela 61.0 94 0.002 36.9 12.7 150 709-871 85-255 (309)
462 TIGR02604 Piru_Ver_Nterm putat 60.8 1.5E+02 0.0032 35.9 14.7 58 1238-1299 72-142 (367)
463 PLN00033 photosystem II stabil 60.8 4E+02 0.0087 32.9 25.7 139 1162-1307 248-396 (398)
464 PF06977 SdiA-regulated: SdiA- 60.1 3.2E+02 0.0069 31.5 23.9 192 1153-1346 20-247 (248)
465 KOG1062 Vesicle coat complex A 59.6 5.6E+02 0.012 34.1 20.8 88 789-878 426-549 (866)
466 PF14583 Pectate_lyase22: Olig 59.5 4.1E+02 0.009 32.6 27.6 255 1081-1346 50-378 (386)
467 PF10313 DUF2415: Uncharacteri 59.2 24 0.00053 29.5 5.1 32 1112-1143 1-35 (43)
468 PLN02153 epithiospecifier prot 59.2 3.1E+02 0.0066 32.6 16.9 97 1241-1339 131-260 (341)
469 PF14870 PSII_BNR: Photosynthe 58.9 3.7E+02 0.0081 31.9 30.5 143 1194-1346 147-301 (302)
470 PLN02193 nitrile-specifier pro 58.0 4.7E+02 0.01 32.8 19.7 72 1244-1315 325-415 (470)
471 PF14781 BBS2_N: Ciliary BBSom 57.6 1.4E+02 0.003 31.3 11.4 104 1117-1220 4-126 (136)
472 KOG1983 Tomosyn and related SN 57.4 1.6E+02 0.0035 40.6 15.4 219 1112-1348 36-263 (993)
473 COG3292 Predicted periplasmic 56.5 3.6E+02 0.0077 34.6 16.5 195 1071-1273 291-496 (671)
474 KOG1896 mRNA cleavage and poly 55.9 1.9E+02 0.0041 39.8 14.9 162 1052-1220 1012-1214(1366)
475 TIGR03548 mutarot_permut cycli 55.8 4E+02 0.0087 31.3 21.6 102 1122-1223 72-198 (323)
476 PF03224 V-ATPase_H_N: V-ATPas 55.7 1.8E+02 0.0038 34.4 13.9 151 577-739 57-223 (312)
477 PF07995 GSDH: Glucose / Sorbo 55.3 4.3E+02 0.0093 31.5 27.6 232 1071-1305 3-330 (331)
478 TIGR02276 beta_rpt_yvtn 40-res 55.0 48 0.001 26.3 6.3 40 1290-1329 1-41 (42)
479 PF07995 GSDH: Glucose / Sorbo 54.4 1E+02 0.0022 36.9 11.6 108 1194-1302 4-135 (331)
480 PRK10115 protease 2; Provision 53.4 6.8E+02 0.015 33.2 26.1 190 1112-1309 127-343 (686)
481 PF13646 HEAT_2: HEAT repeats; 52.0 41 0.00088 31.1 6.3 69 805-892 3-72 (88)
482 PF08801 Nucleoporin_N: Nup133 51.9 4.6E+02 0.0099 32.2 17.2 32 1281-1312 190-221 (422)
483 KOG3522 Predicted guanine nucl 51.8 27 0.00059 45.6 6.4 145 1163-1313 546-700 (925)
484 KOG3616 Selective LIM binding 49.4 2.1E+02 0.0045 37.3 13.0 179 1072-1260 17-237 (1636)
485 PF03224 V-ATPase_H_N: V-ATPas 49.3 36 0.00077 40.2 6.7 107 575-694 146-271 (312)
486 COG5167 VID27 Protein involved 49.2 2.4E+02 0.0052 35.4 13.3 138 1121-1268 477-632 (776)
487 TIGR02270 conserved hypothetic 48.9 3.2E+02 0.007 33.8 14.9 153 703-892 110-279 (410)
488 PF14781 BBS2_N: Ciliary BBSom 48.5 2.6E+02 0.0056 29.3 11.7 99 1081-1183 12-126 (136)
489 PF10313 DUF2415: Uncharacteri 48.4 53 0.0012 27.6 5.5 31 1281-1311 1-34 (43)
490 TIGR03032 conserved hypothetic 47.4 5.7E+02 0.012 30.6 19.6 49 1291-1339 212-260 (335)
491 PF12768 Rax2: Cortical protei 46.5 1.2E+02 0.0027 35.5 10.3 78 1090-1169 17-106 (281)
492 PF14664 RICTOR_N: Rapamycin-i 46.4 2.2E+02 0.0049 34.7 12.9 93 680-784 42-140 (371)
493 PF10433 MMS1_N: Mono-function 46.3 7.1E+02 0.015 31.4 23.1 210 1070-1290 256-503 (504)
494 cd00256 VATPase_H VATPase_H, r 45.9 2E+02 0.0043 35.8 12.4 54 554-608 208-261 (429)
495 PF12768 Rax2: Cortical protei 45.9 1.3E+02 0.0028 35.3 10.4 87 1261-1347 17-121 (281)
496 PF10168 Nup88: Nuclear pore c 45.5 1.5E+02 0.0034 39.2 12.1 67 1282-1348 86-178 (717)
497 KOG1048 Neural adherens juncti 45.4 1.6E+02 0.0035 38.6 11.8 105 562-666 505-619 (717)
498 PF15390 DUF4613: Domain of un 45.1 4.8E+02 0.01 33.7 15.2 138 1069-1207 56-219 (671)
499 PF05694 SBP56: 56kDa selenium 44.3 5.9E+02 0.013 31.8 15.7 145 1202-1346 88-274 (461)
500 COG3823 Glutamine cyclotransfe 43.9 1.2E+02 0.0025 34.2 8.8 96 1253-1348 61-157 (262)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-35 Score=324.67 Aligned_cols=280 Identities=18% Similarity=0.256 Sum_probs=244.8
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
..||.++|.|++|+ +| ++++|+.|.++|+||+.+..+ .++.++|...|.|++|+|||+.|+||+.||+|++||..+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 57999999999996 44 799999999999999999765 889999999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCeEEec-------CCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-eCCEEEEEeCCC
Q 000694 1143 RKLELIEVIATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-VQGKIYIGCMDS 1211 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sLs-------~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~dg~LlSGs~DG 1211 (1349)
|+..-..+.+|...|++++ +....+++++.||.++|||+.. .......+|. |+|+.+ -+|.+++|+.|+
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr 268 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR 268 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence 9988888899999999865 5567899999999999999984 4444455554 999999 689999999999
Q ss_pred cEEEEEccCCccccc-----------------------------------------------------------------
Q 000694 1212 SIQELAVSNNVEREI----------------------------------------------------------------- 1226 (1349)
Q Consensus 1212 sI~IWDl~t~~~~~i----------------------------------------------------------------- 1226 (1349)
+|++|+..+|.....
T Consensus 269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 999999866421100
Q ss_pred --------cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 000694 1227 --------KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1298 (1349)
Q Consensus 1227 --------~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG 1298 (1349)
..+.....+|...|+.+.|+||+.++++.+- |+.|++||.++|+.+.+|+||-+.|+.++|+.|.++|++|
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence 1111223456677899999999999998774 7799999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEee
Q 000694 1299 SSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~--dg~~LaSGS~DGtIrIWD 1347 (1349)
|.|.+++||++++.+....+.+|.. |.++.| ||+.+++|+.|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999998665 999988 588999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=301.49 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=236.8
Q ss_pred cCCCCEEEEEEc-C-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEccC
Q 000694 1067 KCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-d-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpd--g~~LaSGS~DGtIrVWDl~t 1142 (1349)
|-+.+|..+.|+ + ..|+|||.+|.++||+..+.. .+++|.||++.|.++.|+|. +..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc--eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 567899999996 3 379999999999999999864 58899999999999999997 56899999999999999987
Q ss_pred CeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcc-eeecc--CCCeEEEEe-eCCEEE-EEeCCCcEEE
Q 000694 1143 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL-KDIYR--SKGIKSMSV-VQGKIY-IGCMDSSIQE 1215 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~-~~~~~--~~~V~~La~-~dg~Ll-SGs~DGsI~I 1215 (1349)
...+ ..+.+|...|.. |.|+|+++.+++.|.+-++||++... ..... ..+|.+++| ++|.++ +|+.|..-++
T Consensus 251 e~~l-~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ETPL-QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred Ccch-hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 6554 345567777765 67999999999999999999998432 22333 345999999 888877 5899999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-CCCE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIY 1294 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP-Dg~~ 1294 (1349)
||++++... -.+.+|..+|.++.|+|++..+++++ .|++++|||++....+.++.+|..-|+.+.|+| .|.+
T Consensus 330 WDlRtgr~i------m~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 330 WDLRTGRCI------MFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred eecccCcEE------EEecccccceeeEeECCCceEEeecC-CCCcEEEeeecccccceecccccchhhheEecccCCeE
Confidence 999999643 34678999999999999999998876 577999999999999999999999999999999 7899
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1295 LNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
|+|+|.|++++||...++++++++.||.. |.++.. +++.+++++.|.++++|.+
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99999999999999999999999999765 888765 6889999999999999975
No 3
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.7e-31 Score=293.97 Aligned_cols=346 Identities=16% Similarity=0.233 Sum_probs=268.6
Q ss_pred hhhhHHhhHHHHhhcCCCccccccccceEEeeeccCCcceeeeccccccchhhhccccceeecccccccccccccCCCce
Q 000694 974 HSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISR 1053 (1349)
Q Consensus 974 ~aA~~vLL~~L~~~L~~~k~leekVLAsLsL~nl~k~egL~~L~~~s~~v~~sLR~lk~vsw~a~ellkv~~~~~p~~~~ 1053 (1349)
...+.-|+.++...+++...+++|+|.++--.... ..-+.+++.. .+..++... ++.++.
T Consensus 150 ~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~--------~Q~d~cvyhn--sldsvsll~-------Dh~c~~--- 209 (519)
T KOG0293|consen 150 NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVK--------YQRDSCVYHN--SLDSVSLLS-------DHFCGR--- 209 (519)
T ss_pred chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHH--------HHHhHhHHhc--ccchhhhhh-------hcccCc---
Confidence 35677799999999999999999998875332222 0111111110 001111111 222221
Q ss_pred EEEEEeeeeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCC-CceeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 000694 1054 ISCVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 1130 (1349)
Q Consensus 1054 w~~~~t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~t-g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS 1130 (1349)
.-.+.++.+..+.|++.|+-+.|+ +| +||+|+.|.+..+|++.. ......+++.||..+|..+.|+||.++|++|+
T Consensus 210 -~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 -LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred -ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 123344556688999999999996 55 799999999999999853 44567889999999999999999999999999
Q ss_pred CCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCC---eEEEEe-eCCE-
Q 000694 1131 ADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG---IKSMSV-VQGK- 1203 (1349)
Q Consensus 1131 ~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~---V~~La~-~dg~- 1203 (1349)
.|..+++||+.+|.+......++...+.+ +.|+|..+++|+.|+++..||+++....-..+.. |.++++ +||+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 99999999999998865554454455554 6799999999999999999999987766655544 889998 6664
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT-- 1281 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~-- 1281 (1349)
+++.+.|..|++|+..+.....+ .....+|+++..+.++.+++..- .+..+++||+.....+..+.||..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~l-------ise~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGL-------ISEEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred EEEEecccceeeechhhhhhhcc-------ccccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHHHhhcccccc
Confidence 66788999999999987643321 33458899999999999887654 577899999999889999999976
Q ss_pred CeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcC---CEEEEEECCCcEEEeeC
Q 000694 1282 TIQAMAVV-EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAN---DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1282 ~VtsLafS-PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg---~~LaSGS~DGtIrIWD~ 1348 (1349)
.+..-+|. .+..++++||+|+.|+||+..+|+++..+.||.. |+|++|++ .++|+||+||+||||.+
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 33344454 4668999999999999999999999999999987 99999974 49999999999999975
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=257.88 Aligned_cols=276 Identities=13% Similarity=0.169 Sum_probs=236.4
Q ss_pred eecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
.+.+||.+.|.++.|+ |. +++++|.||.+.|||.-+... ++.++-....|..++|+|.|+++++||.|+...||++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 5688999999999996 43 699999999999999988654 5666667889999999999999999999999999999
Q ss_pred cCC--e---EEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-e-C-CEEEEEe
Q 000694 1141 VQR--K---LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-V-Q-GKIYIGC 1208 (1349)
Q Consensus 1141 ~tg--~---~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~-d-g~LlSGs 1208 (1349)
.+. + .+...+.+|.+.+.+.. .+.+.|++++.|.+..+||++. .....+.+|. |.++++ | + +.+++|+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 754 2 33445778999988855 5688999999999999999994 4445555655 888888 5 4 4577899
Q ss_pred CCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEE
Q 000694 1209 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAM 1286 (1349)
Q Consensus 1209 ~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH--~~~VtsL 1286 (1349)
-|+..++||++.+... +.|.+|...|+++.|+|++..+++++ +|++.++||++..+.+..+... ..+|+++
T Consensus 207 cD~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred cccceeeeeccCccee------EeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 9999999999998533 46789999999999999998888765 7899999999998888888733 2489999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEE--EcCCEEEEEECCCcEEEee
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLL--TANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs--~dg~~LaSGS~DGtIrIWD 1347 (1349)
+||..|++|.+|..|.++.|||.-.++.+..+.+|. +|.|+. +||..+++|++|.++|||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999876 498886 4688999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.9e-27 Score=254.91 Aligned_cols=276 Identities=17% Similarity=0.229 Sum_probs=231.9
Q ss_pred eecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCce---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 000694 1063 EASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 1136 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~---~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIr 1136 (1349)
.+..+|++.|+.++.. .+.+++++.|.++.+|++..... ..++.+.||...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 4578999999999994 34799999999999999865322 24788999999999999999999999999999999
Q ss_pred EEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCC----CeEEEEe-eC---CEEEE
Q 000694 1137 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK----GIKSMSV-VQ---GKIYI 1206 (1349)
Q Consensus 1137 VWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~----~V~~La~-~d---g~LlS 1206 (1349)
+||+.+|+.. ..+.+|...|.+ +++++..+++|+.|.+|++|+.-+..+...... -|.|+.| |+ ..+++
T Consensus 89 lWDl~~g~~t-~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGEST-RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEE-EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 9999999654 466788888887 568999999999999999999987665554433 3999999 54 36778
Q ss_pred EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE
Q 000694 1207 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM 1286 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsL 1286 (1349)
++.|++|++||+++.+.. ..+.+|...++.+.++||+..+++++ .||.+.+||++.++.+..+. |...|.++
T Consensus 168 ~s~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~~~k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLNEGKNLYSLE-AFDIVNSL 239 (315)
T ss_pred ccCCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecCC-CCceEEEEEccCCceeEecc-CCCeEeeE
Confidence 999999999999998654 34567899999999999999988764 78899999999999987776 78899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC----C----CCe--EEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA----G----SKI--TSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~----h----s~V--tsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+|+|+...|+.+. +..|+|||+.++..+..+.. . +.+ .+++|+ |..|++|-.||.|++|..
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 9999988887765 45599999999998877762 1 123 556675 999999999999999964
No 6
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.9e-29 Score=277.27 Aligned_cols=267 Identities=15% Similarity=0.210 Sum_probs=227.1
Q ss_pred cCCCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1067 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1067 gH~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
.....|.|+.++|+.+++|..|.+|+|||.++..+ .+.+.||++.|.|+.| +.+.+++||.|.+|+|||+++|+++
T Consensus 195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEecchhhhcccccCceEEeccccHHH--HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 45678999999999999999999999999999765 7889999999999999 5668999999999999999999986
Q ss_pred EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcc----eeeccCC--CeEEEEeeCCEEEEEeCCCcEEEEEccC
Q 000694 1147 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL----KDIYRSK--GIKSMSVVQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~----~~~~~~~--~V~~La~~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
....+|.+.|..+...++.+++++.|.++.+||+.... .....+| .|+.+.|.+..+++++.|.+|++|++.+
T Consensus 271 -~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 271 -NTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred -hHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc
Confidence 45678899999999999999999999999999998432 2233344 3888999888999999999999999999
Q ss_pred CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000694 1221 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1221 ~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
+... +.+.+|...|.+++... .++++++ .|.+|++||+..|.+++.+.||..-|.++.| |.+.+++|+.
T Consensus 350 ~efv------Rtl~gHkRGIAClQYr~--rlvVSGS-SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY 418 (499)
T KOG0281|consen 350 CEFV------RTLNGHKRGIACLQYRD--RLVVSGS-SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 418 (499)
T ss_pred eeee------hhhhcccccceehhccC--eEEEecC-CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence 8633 55678888888877654 4455554 4789999999999999999999999999998 4678999999
Q ss_pred CCcEEEEECCCCcEE---------EEEeCC-CCeEEEEEcCCEEEEEECCCcEEEeeCC
Q 000694 1301 ASSLQIWLRGTQQKV---------GRISAG-SKITSLLTANDIVLCGTETGLIKGWIPL 1349 (1349)
Q Consensus 1301 DGtVrVWDl~tg~~l---------~sl~~h-s~VtsLs~dg~~LaSGS~DGtIrIWD~L 1349 (1349)
||+|+|||+..+..- ..+..| ++|..+.||...+++++.|.+|-|||-+
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcC
Confidence 999999998876432 233334 4699999999999999999999999853
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-28 Score=270.56 Aligned_cols=287 Identities=18% Similarity=0.215 Sum_probs=235.8
Q ss_pred eEEeeeccCCcceeeeccccccchhhhccccceeecccccccccccccCCCceEEEEEeee----eeecccCCCCEEEEE
Q 000694 1001 CLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQI----LEASHKCSGAVTALI 1076 (1349)
Q Consensus 1001 sLsL~nl~k~egL~~L~~~s~~v~~sLR~lk~vsw~a~ellkv~~~~~p~~~~w~~~~t~t----l~~~~gH~~~Vt~La 1076 (1349)
.+.+|+......+.+..+|.+-|.. +.|.|+....+... .+..+.+|+.++ +..+.||...|++++
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlc-------vawsPDgk~iASG~---~dg~I~lwdpktg~~~g~~l~gH~K~It~La 207 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLC-------VAWSPDGKKIASGS---KDGSIRLWDPKTGQQIGRALRGHKKWITALA 207 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEE-------EEECCCcchhhccc---cCCeEEEecCCCCCcccccccCcccceeEEe
Confidence 4578888876777788888888877 89999985544332 234556666444 356789999999999
Q ss_pred Ec------C-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1077 YY------K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1077 fs------d-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
|. + .+||+++.||+|+|||+..+.+ +..+.||+.+|+|+.|--+ .+++|||.|++|++|+...|.+. ..
T Consensus 208 wep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~-r~ 283 (480)
T KOG0271|consen 208 WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLC-RE 283 (480)
T ss_pred ecccccCCCccceecccCCCCEEEEEccCceE--EEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHH-Hh
Confidence 93 2 2699999999999999999876 8899999999999999544 48999999999999999888764 45
Q ss_pred EecCCCCeEEecC-------------CCC-------------------------EEEEEecCCeEEEEecCCc--ceeec
Q 000694 1150 VIATKEPIRKLDT-------------YGK-------------------------TIFASTQGHRMKVIDSSRT--LKDIY 1189 (1349)
Q Consensus 1150 ~~~h~~~V~sLs~-------------~g~-------------------------~LvsgS~DgtIkVWDl~~~--~~~~~ 1189 (1349)
+.+|...|..++. .+. .+++|+.|.++.+|+.... .....
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm 363 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM 363 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence 5677777766432 233 4999999999999998743 33333
Q ss_pred cCCC--eEEEEe-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 000694 1190 RSKG--IKSMSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW 1265 (1349)
Q Consensus 1190 ~~~~--V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIW 1265 (1349)
.+|. |+.+.| ||++++ +++.|..|++||-++|+.. ..+++|-.+|+.++++.|...+++++ .|.++++|
T Consensus 364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l------asfRGHv~~VYqvawsaDsRLlVS~S-kDsTLKvw 436 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL------ASFRGHVAAVYQVAWSADSRLLVSGS-KDSTLKVW 436 (480)
T ss_pred hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh------hhhhhccceeEEEEeccCccEEEEcC-CCceEEEE
Confidence 4443 999999 888755 6999999999999999632 46789999999999999998888876 68899999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1266 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1266 Dl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
|+++.++...+.||...|.++.|+|||..+++|+.|..+++|.
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999995
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=7.7e-28 Score=266.22 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=232.7
Q ss_pred eecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
....||.++|.|+++.+ .+++||+.|++|+|||+.+|+. ..++.||...|..+++++-..|+++++.|+.|+.||+
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 45689999999999964 3799999999999999999976 6789999999999999999999999999999999999
Q ss_pred cCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe--eCCEEEEEeCCCcE
Q 000694 1141 VQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV--VQGKIYIGCMDSSI 1213 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~--~dg~LlSGs~DGsI 1213 (1349)
...+.+. ...+|-..|.+++ |.-+.+++++.|.++++||++. .......+|. |..+.+ .++.+++|+.|++|
T Consensus 223 e~nkvIR-~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 223 EYNKVIR-HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhhhhHH-HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 9887764 4567888899876 6688999999999999999984 4444455544 888877 58999999999999
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1293 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~ 1293 (1349)
++||++.++.. .....|...+.+++.||.....++++.+ .|+-|++..|..+..+.+|...|++++.+.||
T Consensus 302 rlWDl~agkt~------~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 302 RLWDLRAGKTM------ITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred EEeeeccCcee------EeeecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 99999998643 2335678899999999998777777643 59999999999999999999999999988776
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEe---C------CCCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1294 YLNYNSSASSLQIWLRGTQQKVGRIS---A------GSKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1294 ~LaSGS~DGtVrVWDl~tg~~l~sl~---~------hs~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
++++|+.+|.+..||.++|...+... . ...|++.+|| |..|++|..|.+|++|.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 67789999999999999987766553 1 2248888887 77999999999999995
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=282.70 Aligned_cols=338 Identities=17% Similarity=0.207 Sum_probs=259.5
Q ss_pred EEeeeccCCcceeeecc-ccccchhhhccccceeecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEcCC
Q 000694 1002 LCIYNYASGKGMQKLIR-SSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKG 1080 (1349)
Q Consensus 1002 LsL~nl~k~egL~~L~~-~s~~v~~sLR~lk~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafsdg 1080 (1349)
+.+|++..++..+.|.. |+..+.. +...+...+-.........+.|+.........+.||.|.|.++.|++.
T Consensus 86 lrv~~L~tgk~irswKa~He~Pvi~-------ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 86 LRVWSLPTGKLIRSWKAIHEAPVIT-------MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred EEEEEcccchHhHhHhhccCCCeEE-------EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCc
Confidence 46788877777777777 6665554 333443322222222344567776666666778999999999999644
Q ss_pred ----EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE----------
Q 000694 1081 ----LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE---------- 1146 (1349)
Q Consensus 1081 ----~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~---------- 1146 (1349)
.|++|+.|+++++||++++.. +++++.+|.+.|++++|++|+..++++|.|..+.|||+.+.+..
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred cchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 489999999999999997653 57788999999999999999999999999999999986321100
Q ss_pred --------------------------------------------------------------------------------
Q 000694 1147 -------------------------------------------------------------------------------- 1146 (1349)
Q Consensus 1147 -------------------------------------------------------------------------------- 1146 (1349)
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence
Q ss_pred ----------------------------------------EEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc
Q 000694 1147 ----------------------------------------LIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1147 ----------------------------------------~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
+....+|.+.|.++. ..|..+++++.|+++++|.++..
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 233445666666665 45568888999999999987421
Q ss_pred c-----ee--eccCCCeEEEEe---eCCEEEEEeCCCcEEEEEccCCcccccccc---ccccccCCCCeEEEEEcCCceE
Q 000694 1185 L-----KD--IYRSKGIKSMSV---VQGKIYIGCMDSSIQELAVSNNVEREIKAP---FKSWRLQSKPINSLVVYKDWLY 1251 (1349)
Q Consensus 1185 ~-----~~--~~~~~~V~~La~---~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~---lk~~~~h~~~I~sL~~~pd~i~ 1251 (1349)
. .. ..+.+.|.++++ ....+++++.|+++++|++...+....... ......|+..|+++++.|+...
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 1 11 112233777777 233577899999999999977322211000 0122458999999999999999
Q ss_pred EEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE-
Q 000694 1252 SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT- 1329 (1349)
Q Consensus 1252 las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~- 1329 (1349)
+++++ .|++.++|++.......++.||+..|+++.|+|..+.++|+|.|++|+||.+.++.++.++.||.. |....|
T Consensus 478 iAT~S-qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 478 IATGS-QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred EEecc-cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee
Confidence 88876 688999999999999999999999999999999999999999999999999999999999998765 888887
Q ss_pred -cCCEEEEEECCCcEEEeeC
Q 000694 1330 -ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1330 -dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+|..|++++.||-|++|++
T Consensus 557 ~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eCCcEEEeccCCCcEEEEec
Confidence 6889999999999999985
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=266.54 Aligned_cols=275 Identities=16% Similarity=0.229 Sum_probs=233.6
Q ss_pred cccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
..||..+|+.+-|++. .+++++.|++|++||..++++ ...++||++.|.+|+|+..|+++++++.|-.+++||..+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 4679999999999876 488999999999999999987 789999999999999999999999999999999999976
Q ss_pred CeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-eCCEEE-EEeCCCcEEE
Q 000694 1143 RKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-VQGKIY-IGCMDSSIQE 1215 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~dg~Ll-SGs~DGsI~I 1215 (1349)
.........+|...|.++ -|.|+++++++.|.+|+.|++.. -....+.++. |..+.+ .||.++ +++.|.++++
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~v 261 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRV 261 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEE
Confidence 322224556778888874 48899999999999999999984 4445555554 888888 788776 5888999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCC---------------ceEEEEEecCCCeEEEEECCCCCeEEEecCCC
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---------------WLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 1280 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd---------------~i~las~S~dDgtIrIWDl~t~~li~tl~gH~ 1280 (1349)
|-+.++... ..++.|..++.+++|-|. +.+++++ +.|++|++||+.++.++.++.+|.
T Consensus 262 W~~~t~~~k------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~-SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 262 WVVATKQCK------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG-SRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred EEeccchhh------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEee-cccceEEEEeccCCeEEEEEeccc
Confidence 999988432 234667778888877653 2344444 468899999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
.+|.+++|+|.|+||+++.+|++++|||+++++++.++..|.. |+++.|+ -.++++|+-|.++++|.+
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999998776 8999996 349999999999999975
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=9.3e-27 Score=248.22 Aligned_cols=259 Identities=12% Similarity=0.192 Sum_probs=215.4
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EEEEEecCCCCeEE
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-ELIEVIATKEPIRK 1159 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~-~~~~~~~h~~~V~s 1159 (1349)
+|+++|+|.+||+|...+|.+ .++++-..+.|+.+.+.|+++.|++++ ...||+||+++++. ....+.+|...|.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGIC--SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcCeE--EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 699999999999999999987 888987778999999999999999888 45799999998775 34456677777776
Q ss_pred --ecCCCCEEEEEecCCeEEEEecCC--cceeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCcccccccccccc
Q 000694 1160 --LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1160 --Ls~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
|..+|..+++|+.||+++|||++. ....+.....|+++.. .++.+++|..+|.|++||+........ ..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-----li 163 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-----LI 163 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-----cC
Confidence 568999999999999999999984 2333344556999988 557899999999999999988732211 11
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1307 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~------~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVW 1307 (1349)
.....+|.++.+++++.++++.. +.|+.++|++-+. .++..++.|.+.+..+.+|||+++||++|.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 23457899999999999988765 5679999998553 4567788999999999999999999999999999999
Q ss_pred ECCCC-cEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1308 LRGTQ-QKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1308 Dl~tg-~~l~sl~~hs~-VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+.++. +....+.+|.+ ++..+|+ |.+|++|+.|+++++|++
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99887 45556666654 8888885 889999999999999986
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-26 Score=265.24 Aligned_cols=269 Identities=18% Similarity=0.233 Sum_probs=224.9
Q ss_pred CCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
+..|++++|+ +| .||+|+.||.+++|+..... +.++..|++||.++.|+..|++|++++.||++.+||..+|...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 4689999996 44 79999999999999998754 6788899999999999999999999999999999999999876
Q ss_pred EEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCC--cceeeccCC-CeEEEEe-eCCEEE-EEeCCCcEEEEEccC
Q 000694 1147 LIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSK-GIKSMSV-VQGKIY-IGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~-~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t 1220 (1349)
. .+.-|..+-..+. .+...+++.+.|+.|+|+.+.. ....+..++ .|.++.| |.|.++ +++.|+++++|....
T Consensus 312 q-~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 Q-QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred E-eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 4 3444555533344 4567889999999999999873 333333333 3999999 666655 699999999999876
Q ss_pred CccccccccccccccCCCCeEEEEEcCCc---------eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 000694 1221 NVEREIKAPFKSWRLQSKPINSLVVYKDW---------LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1291 (1349)
Q Consensus 1221 ~~~~~i~~~lk~~~~h~~~I~sL~~~pd~---------i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPD 1291 (1349)
.... ..+..|.+.|.++.++|.+ ..+++.+ .|++|++||+..+.++..|..|+.+|++++|+|+
T Consensus 391 ~~~~------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 391 SNSV------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred Ccch------hhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 5322 3456788899999998763 3334433 5889999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1292 FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
|+++|+|+.||.|.+|+.++++.++.+.+.+.|..++|+ |+.|..+-.||.+++-|.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999999999999999999999999999999996 889999999999998774
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.9e-28 Score=271.55 Aligned_cols=265 Identities=14% Similarity=0.215 Sum_probs=222.0
Q ss_pred eecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEcC---C-EEEEEECCCcEEEEECCCCceeEEEEecc
Q 000694 1034 TWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYK---G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKE 1109 (1349)
Q Consensus 1034 sw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafsd---g-~LaSGS~DGtIrVWDl~tg~~~~i~tL~g 1109 (1349)
.++.+..+.++....+..+.|+.-+...++++.||++.|.++.|++ + .+|||+.||++++|++.+... +..+.|
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~--l~~l~g 259 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP--LQDLEG 259 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc--hhhhhc
Confidence 3334443444444445566777666666788999999999999953 3 599999999999999998644 889999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC-cce
Q 000694 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLK 1186 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~-~~~ 1186 (1349)
|...|..++|+|+|++|+|++.|.+-++||+.++... ....+|...|.++ .++|..+++|+.|..-+|||++. ...
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence 9999999999999999999999999999999998754 3456888889884 58999999999999999999984 444
Q ss_pred eeccCC--CeEEEEe-eCCE-EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcC-CceEEEEEecCCCe
Q 000694 1187 DIYRSK--GIKSMSV-VQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSN 1261 (1349)
Q Consensus 1187 ~~~~~~--~V~~La~-~dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~p-d~i~las~S~dDgt 1261 (1349)
.+..+| .|.+++| |+|+ +++|+.|++++|||++.... +..+..|...|..+.+.| .+.++++++ -|++
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~------ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t 411 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE------LYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNT 411 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc------ceecccccchhhheEecccCCeEEEEcc-cCcc
Confidence 444444 3999999 8887 55799999999999987643 234577899999999998 577777766 4779
Q ss_pred EEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1262 IKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1262 IrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
+++|...++.+++.+.||.+.|.+++++||+.+++|++.|.++++|.
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999995
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.7e-25 Score=244.52 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=225.3
Q ss_pred ecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1064 ASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
...+|.++|++++|++ +++++|+.||.|++|++.+++. ...+.+|...+..+.|+|+++.+++++.||.|++||+.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3568999999999963 4799999999999999998764 66778899999999999999999999999999999998
Q ss_pred CCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecC-CcceeeccC--CCeEEEEe-eCCEEEE-EeCCCcEE
Q 000694 1142 QRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS-RTLKDIYRS--KGIKSMSV-VQGKIYI-GCMDSSIQ 1214 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~--~~V~~La~-~dg~LlS-Gs~DGsI~ 1214 (1349)
+++... ....|...+.++. +++..+++++.++.+.+||+. +........ ..+.++.+ +++.+++ ++.||.|+
T Consensus 82 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVR-TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceE-EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 865543 3446666787754 555777777779999999997 333333332 34899999 6566665 45599999
Q ss_pred EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
+||+++++.. ..+..+...+.++.+++++..+++++. ++.+++||..+++.+..+..|...+.++.|+|++.+
T Consensus 161 i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 161 LWDLRTGKCV------ATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred EEEccccccc------eeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence 9999876432 234566778999999999866665543 889999999999999988889999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1295 LNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
+++++.||.|++|+..+++.+..+..+. .|.++.|+ +..|++++.||.|++|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999889999999999999988888654 59999986 47999999999999996
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=242.97 Aligned_cols=277 Identities=15% Similarity=0.191 Sum_probs=224.7
Q ss_pred CceEEEEEeee---eeecccCCCCEEEEEE-cCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEE
Q 000694 1051 ISRISCVHTQI---LEASHKCSGAVTALIY-YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL 1126 (1349)
Q Consensus 1051 ~~~w~~~~t~t---l~~~~gH~~~Vt~Laf-sdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~L 1126 (1349)
+.++.+|+..+ ..+.+...+.|+.+.+ +++..++++....||+||+++++..++.++.+|++.|+++.|..+|+.+
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM 98 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence 34444444333 2345556678999999 4555444444578999999999888899999999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCcc--eeec--cCCCeEEEEe-
Q 000694 1127 LSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTL--KDIY--RSKGIKSMSV- 1199 (1349)
Q Consensus 1127 aSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~~--~~~~--~~~~V~~La~- 1199 (1349)
+|||.||+++|||++... +.....+..+|.++ .++...++++.++|.|++||+.... .... ....|.++.+
T Consensus 99 yTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred EecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 999999999999998844 35566778899985 4788899999999999999998431 1111 2234889998
Q ss_pred eCCEEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEec
Q 000694 1200 VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAP 1277 (1349)
Q Consensus 1200 ~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~li~tl~ 1277 (1349)
++|..+ ++...|+.++|++-+........|...+..|...+....++|+..++++++ .|.+++||+..+. +....+.
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCceeeEEEee
Confidence 887655 567789999999988755555566677888999999999999999999887 4789999999887 6677888
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc
Q 000694 1278 EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA 1330 (1349)
Q Consensus 1278 gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~d 1330 (1349)
+|..+++.++||.||.||+||+.|+.+++|++..++.+..+.+|-+ ..|++.+
T Consensus 256 gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 256 GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999999999999999998654 5666543
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=8e-26 Score=246.75 Aligned_cols=274 Identities=15% Similarity=0.208 Sum_probs=230.1
Q ss_pred eecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
....||.+.|..+.|+ +| .+||||.|..|.+|++... +.....++||+++|..+.|.+|+..|+++|.|++|+.||+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3467999999999994 55 7999999999999997653 3456788999999999999999999999999999999999
Q ss_pred cCCeEEEEEEecCCCCeEEecC---CCCEEEEEecCCeEEEEecCC-cceeec-cCCCeEEEEe--eCCEEEEEeCCCcE
Q 000694 1141 VQRKLELIEVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSSR-TLKDIY-RSKGIKSMSV--VQGKIYIGCMDSSI 1213 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~---~g~~LvsgS~DgtIkVWDl~~-~~~~~~-~~~~V~~La~--~dg~LlSGs~DGsI 1213 (1349)
++|+... ....|...|.++.+ ....+.+++.|+++++||++. .....+ ....++++.| ...++++|+-|+.|
T Consensus 120 ~tG~~~r-k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIR-KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeee-hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 9999864 45577788888764 345678899999999999984 233333 3345889999 45689999999999
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEecCCCC----CeEE
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPEKGT----TIQA 1285 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t----~~li~tl~gH~~----~Vts 1285 (1349)
++||++.+... ....+|..+|+.+..++++.++++.+. |.++++||++. .+++..+.+|.. ....
T Consensus 199 kvWd~r~~d~~------~~lsGh~DtIt~lsls~~gs~llsnsM-d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 199 KVWDLRKNDGL------YTLSGHADTITGLSLSRYGSFLLSNSM-DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeeccccCcce------EEeecccCceeeEEeccCCCccccccc-cceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99999877432 356889999999999999999998764 77999999864 456888887754 4567
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEECCCcEEE
Q 000694 1286 MAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTETGLIKG 1345 (1349)
Q Consensus 1286 LafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg~--~LaSGS~DGtIrI 1345 (1349)
++|+|++.++.+|+.|..+++||......+..++||.. |+++.|.+. +|.+++.|.+|++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 89999999999999999999999999999999999765 999999754 9999999999876
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=268.70 Aligned_cols=284 Identities=17% Similarity=0.182 Sum_probs=228.3
Q ss_pred EEeeeeeecccCCCCEEEEEEcC--C-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 000694 1057 VHTQILEASHKCSGAVTALIYYK--G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK 1133 (1349)
Q Consensus 1057 ~~t~tl~~~~gH~~~Vt~Lafsd--g-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DG 1133 (1349)
.+.+.+.+..||+..|+++.|.+ + +|++|+.||.|+||++.... .+++++.||..+|.+++|+++|..++|+|.|+
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 34455667899999999999953 3 69999999999999998722 35999999999999999999999999999999
Q ss_pred eEEEEEccCCeEEEEEEecCCCCeEEecCCC-CEEEEEecCCeEEEEecCC-cceeeccC--CCeEEEEe-eCC-EEEEE
Q 000694 1134 TIGVWQMVQRKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSR-TLKDIYRS--KGIKSMSV-VQG-KIYIG 1207 (1349)
Q Consensus 1134 tIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g-~~LvsgS~DgtIkVWDl~~-~~~~~~~~--~~V~~La~-~dg-~LlSG 1207 (1349)
.|++||+++|++......+..-.+..+.+++ +.+++|+.|+.|+.||++. .....+.. ..|..+.| ++| ++++.
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999987655555444455566777 8899999999999999983 33322222 23888998 554 68889
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEecCCC--CC
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKG--TT 1282 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~---~li~tl~gH~--~~ 1282 (1349)
+.|+++++|+.+.+..... ....+.....++..||++.+.++-+ -|+.|.+|.+... ...+.+.||. +.
T Consensus 361 SDdks~riWe~~~~v~ik~-----i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKN-----IADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ccCccEEEEEcCCCccchh-----hcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCHhhhhcceeccCc
Confidence 9999999999988743322 1122334567889999999888766 4678999986542 2345677775 45
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc---CCEEEEEECCCcEEEee
Q 000694 1283 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA---NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1283 VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~d---g~~LaSGS~DGtIrIWD 1347 (1349)
-..+.|||||.+|++|+.||.+.+||.++-+.+..++.|. .++.+.|. ...+|+|+.||.|++|+
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6678999999999999999999999999999999999874 58999997 44899999999999997
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=2.5e-26 Score=276.19 Aligned_cols=236 Identities=16% Similarity=0.261 Sum_probs=197.2
Q ss_pred CCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCc-----------------------------eeEEEEeccCCCcEEE
Q 000694 1068 CSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQS-----------------------------AMLVWDVKEHRKAVTS 1116 (1349)
Q Consensus 1068 H~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~-----------------------------~~~i~tL~gHss~Vts 1116 (1349)
-...++|..|+|+ .+|.|..|..|++|.+...+ .....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3467999999755 59999999999999986311 0123457899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCe
Q 000694 1117 FSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGI 1194 (1349)
Q Consensus 1117 LafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V 1194 (1349)
+.|+|+.++|+++|.|++||+|.+.+..+.. ...+|..+|+. |+|.|-++++++.|++-+
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~tAr----------------- 518 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQTAR----------------- 518 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCceee-----------------
Confidence 9999999999999999999999999887653 34477777765 345555555555555544
Q ss_pred EEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 000694 1195 KSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 1274 (1349)
Q Consensus 1195 ~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~ 1274 (1349)
+|..... .|.+.+.+|-..+.++.|||+..|+++++ .|.+|++||+.+|..++
T Consensus 519 --------------------LWs~d~~------~PlRifaghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 519 --------------------LWSTDHN------KPLRIFAGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGNSVR 571 (707)
T ss_pred --------------------eeecccC------CchhhhcccccccceEEECCcccccccCC-CCceEEEEEcCCCcEEE
Confidence 4444332 24567788999999999999999999885 68899999999999999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1275 IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1275 tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|.||.++|.+++|||+|++|++|+.||.|.+||+.++..+..+.+|.. |.++.| +|..||+||.|.+|++||.
T Consensus 572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999998765 889887 5999999999999999995
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=5.8e-25 Score=239.18 Aligned_cols=238 Identities=12% Similarity=0.124 Sum_probs=205.5
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEec
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl 1181 (1349)
.++++||.+.|.++.|++|+++|+++|.||.+.|||.-+...+. ..+-....|.. ++|.++.+++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-EEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 46889999999999999999999999999999999998866543 23333444543 7899999999999999999999
Q ss_pred CC-------cceeeccCCC--eEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcC-Cce
Q 000694 1182 SR-------TLKDIYRSKG--IKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWL 1250 (1349)
Q Consensus 1182 ~~-------~~~~~~~~~~--V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~p-d~i 1250 (1349)
.. .......+|. +.|..| +|+++++|+.|.+..+||+.+++.. ..+.+|...|.++.+.| ++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~------~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQT------QVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEE------EEecCCcccEEEEecCCCCCC
Confidence 72 2233344443 889999 8999999999999999999999643 46789999999999999 666
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC---CeEEE
Q 000694 1251 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS---KITSL 1327 (1349)
Q Consensus 1251 ~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs---~VtsL 1327 (1349)
..++++ -|+..++||++.+.++++|.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+.. +|+++
T Consensus 201 tFvSg~-cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGG-CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecc-cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 666665 47899999999999999999999999999999999999999999999999999999999998744 48999
Q ss_pred EEc--CCEEEEEECCCcEEEeeCC
Q 000694 1328 LTA--NDIVLCGTETGLIKGWIPL 1349 (1349)
Q Consensus 1328 s~d--g~~LaSGS~DGtIrIWD~L 1349 (1349)
+|+ |++|++|..|.++.+||.|
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred EEcccccEEEeeecCCceeEeecc
Confidence 985 9999999999999999975
No 20
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.8e-25 Score=249.83 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=221.8
Q ss_pred ccCCCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEEccC
Q 000694 1066 HKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~---~LaSGS~DGtIrVWDl~t 1142 (1349)
..|.+.|.++....+.+++|++||++++||..+. .++++.||.++|.+++|.-.+. .++++|.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 4689999999999889999999999999999874 3778899999999999864443 599999999999999987
Q ss_pred CeEEEEE---EecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC--------------------------cceeeccC
Q 000694 1143 RKLELIE---VIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR--------------------------TLKDIYRS 1191 (1349)
Q Consensus 1143 g~~~~~~---~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~--------------------------~~~~~~~~ 1191 (1349)
+...... -.+|...|.+++ .++..+++|+.|.+|++|+... .+.....+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 7643221 138999999876 8899999999999999999321 01122223
Q ss_pred CC--eEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1192 KG--IKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1192 ~~--V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
|. |.++.| +.+.+++++.|.+|+.||+.++..... ...+..+.++..+|....+++++ .|..+++||.+
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~-------~~~~ksl~~i~~~~~~~Ll~~gs-sdr~irl~DPR 330 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKST-------LTTNKSLNCISYSPLSKLLASGS-SDRHIRLWDPR 330 (423)
T ss_pred cccceeeEEEcCCCceEeecccceEEEEEeecccceee-------eecCcceeEeecccccceeeecC-CCCceeecCCC
Confidence 33 888888 667788999999999999999864322 23457889999999877777665 57899999997
Q ss_pred CC---CeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-EEEEEeCCC-CeEEEEEc-CCEEEEEECCC
Q 000694 1269 RK---PQISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQ-KVGRISAGS-KITSLLTA-NDIVLCGTETG 1341 (1349)
Q Consensus 1269 t~---~li~tl~gH~~~VtsLafSPDg-~~LaSGS~DGtVrVWDl~tg~-~l~sl~~hs-~VtsLs~d-g~~LaSGS~DG 1341 (1349)
++ -+..++.+|...|.++.|+|.. ..|++|+.||++++||+++.. ++..+.+|. +|.++.|+ |..+++||.|.
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADN 410 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcc
Confidence 74 3457889999999999999955 568999999999999999887 999999866 49999996 66999999999
Q ss_pred cEEEee
Q 000694 1342 LIKGWI 1347 (1349)
Q Consensus 1342 tIrIWD 1347 (1349)
+|+|+.
T Consensus 411 ~l~i~~ 416 (423)
T KOG0313|consen 411 KLRIFK 416 (423)
T ss_pred eEEEec
Confidence 999974
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=257.30 Aligned_cols=269 Identities=16% Similarity=0.233 Sum_probs=226.3
Q ss_pred CCCEEEEEE-cCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIY-YKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Laf-sdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
.-.|..|.| ++| .|++|+..|.+.+|+..+-.. ...+++|.++|+++.|+++|.+++||+.||.|++|+..-...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 457999999 455 699999999999999865332 234589999999999999999999999999999999865543
Q ss_pred EEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe--eCCEEEEEeCCCcEEEEEcc
Q 000694 1147 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV--VQGKIYIGCMDSSIQELAVS 1219 (1349)
Q Consensus 1147 ~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~--~dg~LlSGs~DGsI~IWDl~ 1219 (1349)
.....+|...|++ ++++...+++++.||+|+|||... .......+++ |+++++ ..|.+++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 2333456688887 458889999999999999999973 3333334444 999999 56788899999999999999
Q ss_pred CCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 000694 1220 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIYLNYN 1298 (1349)
Q Consensus 1220 t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP-Dg~~LaSG 1298 (1349)
++... .....|...|..+.|.+++.++++.+ .|..++++|+++.+.+..+++|...|+++.|+| ...+|.+|
T Consensus 253 Sg~cl------~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGSCL------ATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred Ccchh------hhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 98643 34467899999999999999998876 678999999998888999999999999999999 56788999
Q ss_pred eCCCcEEEEECCCCcEEEEEeC-C-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1299 SSASSLQIWLRGTQQKVGRISA-G-SKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~-h-s~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
+.||.|..|.+...+++..+.. | ..|++++|+ |.+|++|+.|.++++|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999987778877764 3 459999997 88999999999999995
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.4e-25 Score=256.80 Aligned_cols=271 Identities=13% Similarity=0.207 Sum_probs=233.1
Q ss_pred cccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
+..|++.|.|+.+++. +++++-.+|.|.|||.+++.. ++++.-..-||.+..|-+..+++++|++|..||||+.++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee--eeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4558999999999754 799999999999999999765 888888888999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc--ceeeccCCC--eEEEEe-e--CCEEEEEeCCCcE
Q 000694 1143 RKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKG--IKSMSV-V--QGKIYIGCMDSSI 1213 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~--~~~~~~~~~--V~~La~-~--dg~LlSGs~DGsI 1213 (1349)
++.+ ..+..|.+.|.++. |....+++++.|-+|++||+++. ....+.+|. |.+++| | .+.++++|-|++|
T Consensus 87 ~ekV-~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 87 GEKV-KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred ceee-EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 9876 46678999999965 78889999999999999999963 344455544 999999 4 4679999999999
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1291 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~--i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPD 1291 (1349)
++|.+.+.. +...+.+|...|+++.+.+.+ .++++++ ||.++++||.++..|++++.||...|..+.|+|.
T Consensus 166 KVWslgs~~------~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 166 KVWSLGSPH------PNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred EEEEcCCCC------CceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 999997764 224567899999999998654 5777654 7899999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEE--cCCEEEEEECCCcEEE
Q 000694 1292 FIYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLT--ANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~--dg~~LaSGS~DGtIrI 1345 (1349)
-..++|||+||+|+||+..+.+...++.- .++|+|++. .+..++.|.+.|.|.+
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999888887774 567999985 4557888888887754
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-24 Score=235.18 Aligned_cols=237 Identities=16% Similarity=0.224 Sum_probs=193.1
Q ss_pred eeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1062 LEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
.+.+.||...|..++.+ +| +.++|+.||++++||+.+++. .+.|.||...|.+++|++|++.++||+.|++|++||
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~--t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES--TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE--EEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 45678999999999994 55 799999999999999999865 788999999999999999999999999999999999
Q ss_pred ccCCeEEEEEEec-CCCCeEEe--cCC--CCEEEEEecCCeEEEEecCCcc-eeeccC--CCeEEEEe-eCCEEE-EEeC
Q 000694 1140 MVQRKLELIEVIA-TKEPIRKL--DTY--GKTIFASTQGHRMKVIDSSRTL-KDIYRS--KGIKSMSV-VQGKIY-IGCM 1209 (1349)
Q Consensus 1140 l~tg~~~~~~~~~-h~~~V~sL--s~~--g~~LvsgS~DgtIkVWDl~~~~-~~~~~~--~~V~~La~-~dg~Ll-SGs~ 1209 (1349)
+..+ +..+.... +.+.|.++ +|+ ...|++++.|+++++||+++.. ...+.+ +.++.+.+ |||.+. +|+.
T Consensus 134 t~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 134 TLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred eccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 9654 44334333 37788884 465 6789999999999999998643 333333 34899998 888766 5999
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC----C-----C
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE----K-----G 1280 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g----H-----~ 1280 (1349)
||.+.+||++.++.... ..+...|.+++|.|+..+++... +..|+|||+.++.++..+.. . .
T Consensus 213 dg~~~LwdL~~~k~lys-------l~a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYS-------LEAFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred CceEEEEEccCCceeEe-------ccCCCeEeeEEecCCceeEeecc--CCceEEEeccchhhhhhccccccccccccCC
Confidence 99999999998864211 35678999999999988877654 55799999999888766542 1 2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
....+++|++||..|.+|-.|+.|++|.+.
T Consensus 284 ~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 245678999999999999999999999764
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=228.39 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=226.8
Q ss_pred eeeecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1061 ILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
.+.....|.++|.++.|+ +++.++++.|.+|++|+...+.+ ++++.||...|..++.+.|+..+++|+.|+.|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 345567899999999996 45899999999999999998865 99999999999999999999999999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC---cceeecc--CCCeEEEEeeCCEEEEEeCCC
Q 000694 1139 QMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR---TLKDIYR--SKGIKSMSVVQGKIYIGCMDS 1211 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~---~~~~~~~--~~~V~~La~~dg~LlSGs~DG 1211 (1349)
|+.+|+... .+.+|...|..+. .....+++|+.|.++++||.+. .+..+.. ..+|.++.+.+-.+++|+.||
T Consensus 87 DV~TGkv~R-r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 87 DVNTGKVDR-RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred EcccCeeee-ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 999999874 6678899999865 5567899999999999999983 2222222 235889988999999999999
Q ss_pred cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE--EEEEe
Q 000694 1212 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ--AMAVV 1289 (1349)
Q Consensus 1212 sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vt--sLafS 1289 (1349)
+++.||++.+... -+.-+.||+++.+++++...++++ -|+++++.|-.+|+++..++||...-. .++++
T Consensus 166 tvRtydiR~G~l~--------sDy~g~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 166 TVRTYDIRKGTLS--------SDYFGHPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred cEEEEEeecceee--------hhhcCCcceeEEecCCCCEEEEee-ccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 9999999998632 133478999999999998888766 477999999999999999999987443 45667
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--eEEEEEcCC--EEEEEECCCcEEEe
Q 000694 1290 EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLTAND--IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1290 PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~--VtsLs~dg~--~LaSGS~DGtIrIW 1346 (1349)
.....+++|++||.|.+||+.....+..+..++. |+++++.+. .|++++. +.+..|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 7788999999999999999999999999998766 578887755 3444433 335555
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=258.70 Aligned_cols=273 Identities=13% Similarity=0.204 Sum_probs=231.5
Q ss_pred cccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1065 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
..|.++.|..++|- +.++|.++..+.+|+|+..+..+. .+.||+..|.++....+|.+|+|||.|+++++|.++
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 46889999999993 458999999999999999987763 678999999999977788899999999999999885
Q ss_pred CCeEE---EEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCc----ce--------eeccCCCeEEEEe-eCC
Q 000694 1142 QRKLE---LIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT----LK--------DIYRSKGIKSMSV-VQG 1202 (1349)
Q Consensus 1142 tg~~~---~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~----~~--------~~~~~~~V~~La~-~dg 1202 (1349)
++... .....+|.+.|.++. .....+++++.|+++++|++.+. .. ...+.+.|+|+++ |++
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 54322 123457888888765 45568999999999999999851 10 1123455999999 776
Q ss_pred EEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 000694 1203 KIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1281 (1349)
Q Consensus 1203 ~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~ 1281 (1349)
+++ +|+.|.+.++|++...... .++.+|...+.++.|.+....++++| .|++|+||.+.++.+++++.||..
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred ceEEecccccceeeecccCceEE------EEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccceeeeeecCccc
Confidence 655 6999999999999966432 46689999999999999988888776 588999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
.|..+.|-.+|..|+|++.||-|++|++++++++.++..|. +|++++.+ ++++++|+.||.|.+|.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999999999766 59999865 66999999999999995
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=1.8e-24 Score=246.94 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=226.8
Q ss_pred cCCCCEEEEEEc---CCEEEEEECCCcEEEEECCC--CceeE----EEEe--cc----CCCcEEEEEEcCCCCEEEEEeC
Q 000694 1067 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKK--QSAML----VWDV--KE----HRKAVTSFSLFEPGESLLSGSA 1131 (1349)
Q Consensus 1067 gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~t--g~~~~----i~tL--~g----Hss~VtsLafSpdg~~LaSGS~ 1131 (1349)
.|..+|.+.+|+ ++.+++|+.|-+.++|++.. ..... .+.+ .+ .+..|++++|+.+|..|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 399999999995 45899999999999999864 11111 1111 11 2357999999999999999999
Q ss_pred CCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecC-CcceeeccCCC--eEEEEe-eCCEEE
Q 000694 1132 DKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG--IKSMSV-VQGKIY 1205 (1349)
Q Consensus 1132 DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~--V~~La~-~dg~Ll 1205 (1349)
||.+++|+...+.. ..+..|+++|.++. ..|++|++++.|+++.+||.. +.....+..+. --.+.| .+..++
T Consensus 256 ~G~~riw~~~G~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNKDGNLI--STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred CcEEEEEecCchhh--hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 99999999855433 45678999999965 678889999999999999986 33344443333 255677 788899
Q ss_pred EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE
Q 000694 1206 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 1285 (1349)
Q Consensus 1206 SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vts 1285 (1349)
+.+.||.|+++.+.... |.+.+.+|..+|..+.++|.+..+++++ +|+++++|+.........+.+|...|..
T Consensus 334 ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred ecCCCceEEEEEecCCC------cceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchhhhhhhccceee
Confidence 99999999999886653 4466788999999999999999988876 7899999999998999999999999999
Q ss_pred EEEecCC---------CEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1286 MAVVEDF---------IYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1286 LafSPDg---------~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|+|+| ..+++++.|++|++||+..|.+++++.. ..+|.+++|+ |+++++|+.||.|.+|++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999964 5899999999999999999999999965 5569999986 889999999999999985
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=3.4e-23 Score=268.73 Aligned_cols=276 Identities=14% Similarity=0.160 Sum_probs=214.2
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCc----e--eEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQS----A--MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTI 1135 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~----~--~~i~tL~gHss~VtsLafSpd-g~~LaSGS~DGtI 1135 (1349)
..+|.+.|++++|+ +| ++|+|+.||+|+|||..+.. . .....+. +...|.+++|+|. +.+|++|+.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 35699999999995 44 79999999999999986421 0 1223344 4568999999874 6889999999999
Q ss_pred EEEEccCCeEEEEEEecCCCCeEEec--C-CCCEEEEEecCCeEEEEecCC-cc-eeeccCCCeEEEEe--eCC-EEEEE
Q 000694 1136 GVWQMVQRKLELIEVIATKEPIRKLD--T-YGKTIFASTQGHRMKVIDSSR-TL-KDIYRSKGIKSMSV--VQG-KIYIG 1207 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~V~sLs--~-~g~~LvsgS~DgtIkVWDl~~-~~-~~~~~~~~V~~La~--~dg-~LlSG 1207 (1349)
++||+.+++.. ....+|...|.++. + ++..+++|+.||+|++||+.. .. ..+.....+.++.+ +++ .+++|
T Consensus 558 ~lWd~~~~~~~-~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEE-EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 99999988765 34567889998865 3 578899999999999999973 22 22223345888888 334 57789
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEecCCCC
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGT 1281 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t------~~li~tl~gH~~ 1281 (1349)
+.||.|++||+++... +...+.+|...|..+.+.++ .++++++ .|++|++||+.. ..++..+.+|..
T Consensus 637 s~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~~-~~lvs~s-~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 637 SADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVDS-STLVSSS-TDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred eCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeCC-CEEEEEE-CCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 9999999999987632 12344678889999999754 4455544 588999999974 357788999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------------CC-CCeEEEEEc--CCEEEEEECCCcEEE
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-------------AG-SKITSLLTA--NDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~-------------~h-s~VtsLs~d--g~~LaSGS~DGtIrI 1345 (1349)
.+..++|+|++.+|++|+.||.|++|+.....++..+. .+ ..|.+++|+ +.+|++|+.||+|+|
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 99999999999999999999999999987665543321 12 238999985 669999999999999
Q ss_pred eeCC
Q 000694 1346 WIPL 1349 (1349)
Q Consensus 1346 WD~L 1349 (1349)
|+.+
T Consensus 790 ~~~~ 793 (793)
T PLN00181 790 LEMV 793 (793)
T ss_pred EecC
Confidence 9975
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=7e-23 Score=236.34 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=214.2
Q ss_pred ecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1064 ASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~---gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
.+..|..-|.|+.|+ || +++|.+.||+|.+||-.+++. +..+. +|++.|.+++|+||++.++|+|.|.+++||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 467899999999995 55 799999999999999999876 67776 899999999999999999999999999999
Q ss_pred EccCCeEEEEEEecCC--C-CeEEecCCCCEEEEEecCCeEEEEecCC-cceeeccCC--CeEEEEe-eCC-EEEEEeCC
Q 000694 1139 QMVQRKLELIEVIATK--E-PIRKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSK--GIKSMSV-VQG-KIYIGCMD 1210 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~--~-~V~sLs~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~--~V~~La~-~dg-~LlSGs~D 1210 (1349)
|+.+++++.+...+.. + .+-++ +.++.+++.+.+|+|.+++... .......+| .|+++.. +++ .+++|+.|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~l-Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCL-WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEE-EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9999988766554433 2 23333 4488999999999999999873 344444444 4999998 554 68899999
Q ss_pred CcEEEEEccCCcccccc-------------------------cccccc-------------ccCCC--------------
Q 000694 1211 SSIQELAVSNNVEREIK-------------------------APFKSW-------------RLQSK-------------- 1238 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~-------------------------~~lk~~-------------~~h~~-------------- 1238 (1349)
|.|.-||..++....+. ..++.. ....+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999999765322110 000000 00001
Q ss_pred -----------------------CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEecCCCCCeEEEEEecCCC
Q 000694 1239 -----------------------PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFI 1293 (1349)
Q Consensus 1239 -----------------------~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l--i~tl~gH~~~VtsLafSPDg~ 1293 (1349)
...+++++|++...+.++ +|+.+++|.+..+.. ......|.++|++++||||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 112335555555555544 678899999987543 335567999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEcC--CEEEEEECCCcEEEeeC
Q 000694 1294 YLNYNSSASSLQIWLRGTQQKVGRIS--AGSKITSLLTAN--DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1294 ~LaSGS~DGtVrVWDl~tg~~l~sl~--~hs~VtsLs~dg--~~LaSGS~DGtIrIWD~ 1348 (1349)
|||+|...+.|.+||+.+.+...... |+.+|+|++|++ .++|+|+-|-.|.||+.
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999999988743322 355699999974 49999999999999974
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=257.03 Aligned_cols=276 Identities=17% Similarity=0.302 Sum_probs=225.6
Q ss_pred cCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC-
Q 000694 1067 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR- 1143 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg- 1143 (1349)
.|...|+|+.|+ +| .+++++.|+.+++|+..+.+....+.+.+|...|.+++|+|+++++++|+.|++|++||+..+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 348899999995 44 799999999999999976652246677899999999999999999999999999999999444
Q ss_pred eEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccCC--CeEEEEe-eCC-EEEEEeCCCcEEEE
Q 000694 1144 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSK--GIKSMSV-VQG-KIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~--~V~~La~-~dg-~LlSGs~DGsI~IW 1216 (1349)
... ..+.+|...|++ |.+.++.+++|+.|++|++||+.. ........+ .|.+++| +++ .+++++.||.|++|
T Consensus 237 ~~~-~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 237 RNL-KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred eEE-EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 444 456699999988 558889999999999999999994 555555444 4999999 555 56678889999999
Q ss_pred EccCCccccccccccccccC-CC-CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC---eEEEEEecC
Q 000694 1217 AVSNNVEREIKAPFKSWRLQ-SK-PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT---IQAMAVVED 1291 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h-~~-~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~---VtsLafSPD 1291 (1349)
|+.++... ..+....+ .. +++++.++|++.++++.. .|+.+++||+..+.+...+.+|... +.+...+++
T Consensus 316 d~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 316 DLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred ECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99998632 01122222 22 699999999999999875 5789999999999999999999875 334455789
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCC-C-CeEEEEEc--CCEEEEEE--CCCcEEEeeC
Q 000694 1292 FIYLNYNSSASSLQIWLRGTQQKVGRISAG-S-KITSLLTA--NDIVLCGT--ETGLIKGWIP 1348 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s-~VtsLs~d--g~~LaSGS--~DGtIrIWD~ 1348 (1349)
+.++++|+.|+.|++|+..++..+..+.+| . .+..+.++ ..++++++ .|+.|++|..
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999999999999999999999999999988 3 46777765 66888888 7999999963
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-24 Score=257.35 Aligned_cols=277 Identities=13% Similarity=0.225 Sum_probs=227.6
Q ss_pred cccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
+..-+..|..++|++. ++.++-..|.|.+||.+-+.+ +..|.+|.++|..++|+|++..++|||+|..|+||+..+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl--i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhH--HhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 4455778999999765 799999999999999998765 889999999999999999999999999999999999998
Q ss_pred CeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecC-CcceeeccCC--CeEEEEe-e-CCEEEEEeCCCcEEE
Q 000694 1143 RKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSK--GIKSMSV-V-QGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~--~V~~La~-~-dg~LlSGs~DGsI~I 1215 (1349)
.++.. .+.+|-+.|..+ .+.-.+|+++|.|.+|+||++. +......++| .|.|..| | +..+++++-|.+|++
T Consensus 83 rrclf-tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLF-TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehh-hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 88764 556888888874 4666789999999999999998 4555555554 4999999 5 677889999999999
Q ss_pred EEccCCcccccccc-----------------------ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-
Q 000694 1216 LAVSNNVEREIKAP-----------------------FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP- 1271 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~-----------------------lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~- 1271 (1349)
||+..-+.+...+. ..++.+|...|+-++|||....+++++ ||+.|++|..+..+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-CcceeeEEEeccccc
Confidence 99965432221111 124467888999999999988888765 89999999986543
Q ss_pred -eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEc--CCEEEEEECCCcEEEe
Q 000694 1272 -QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLTA--NDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1272 -li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~d--g~~LaSGS~DGtIrIW 1346 (1349)
.+.+..||...|.++-|+|....++|.|+|++|+|||+...+.+.++.. +.+-+.++.+ .+++++|.+.| +.||
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 3567889999999999999999999999999999999999999999986 5666666654 66777776666 4444
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=2e-25 Score=245.82 Aligned_cols=228 Identities=15% Similarity=0.193 Sum_probs=198.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC-Ccceee
Q 000694 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDI 1188 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~ 1188 (1349)
....|.|+.+ |...+++|..|++|+|||.++-.+. ..+.+|.+.|.|+..+...+++|+.|.+|++||++ +.....
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~-~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECL-KILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHH-HhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH
Confidence 4568999998 5667999999999999999887665 35679999999999999999999999999999998 444444
Q ss_pred ccCC--CeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 000694 1189 YRSK--GIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 1266 (1349)
Q Consensus 1189 ~~~~--~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWD 1266 (1349)
..+| .|-.+.|.+|.+++++.|.++.+||+......++ .+++.+|...|+.+.+... ++++.+ .|.+|++|+
T Consensus 273 lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~---rrVLvGHrAaVNvVdfd~k--yIVsAS-gDRTikvW~ 346 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITL---RRVLVGHRAAVNVVDFDDK--YIVSAS-GDRTIKVWS 346 (499)
T ss_pred HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHH---HHHHhhhhhheeeeccccc--eEEEec-CCceEEEEe
Confidence 4444 3888889999999999999999999988754333 3456789999999999876 455444 488999999
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEECCCcEEE
Q 000694 1267 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1267 l~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg~~LaSGS~DGtIrI 1345 (1349)
+.+++.++++.+|...|-|+.+ .|+++++|+.|.+|++||+..|.++..+.||.. |.|+.|+.+.+++|+.||+|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEE
Confidence 9999999999999999988875 689999999999999999999999999999887 8999999999999999999999
Q ss_pred eeC
Q 000694 1346 WIP 1348 (1349)
Q Consensus 1346 WD~ 1348 (1349)
||.
T Consensus 425 Wdl 427 (499)
T KOG0281|consen 425 WDL 427 (499)
T ss_pred Eec
Confidence 995
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=258.17 Aligned_cols=269 Identities=18% Similarity=0.296 Sum_probs=234.1
Q ss_pred cCCCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1067 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1067 gH~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~t-L~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
.|...++|..|.++++++|+.|++|++||..++.. +.. +.||.+.|.++++..-+..|++|+.|.+++|||..+|.+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 36778999999999999999999999999999875 455 999999999999987788999999999999999999999
Q ss_pred EEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC-CcceeeccCC--CeEEEEeeCCEEEEEeCCCcEEEEEccCCc
Q 000694 1146 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSK--GIKSMSVVQGKIYIGCMDSSIQELAVSNNV 1222 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~--~V~~La~~dg~LlSGs~DGsI~IWDl~t~~ 1222 (1349)
.+ .+.+|.+.|.++.-.+..+++|+.|.+|++|++. +.......++ .|.++...++.+++|+.||+|++||+.+++
T Consensus 284 ~~-~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 284 TH-SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EE-EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence 76 4458999999999999999999999999999998 4555555433 399999999999999999999999999875
Q ss_pred cccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000694 1223 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1301 (1349)
Q Consensus 1223 ~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~li~tl~gH~~~VtsLafSPDg~~LaSGS~D 1301 (1349)
. ++.+.+|...|.++.+.+. ..+.+++. |++|++||+.++ +++.++.+|..-+.++. ..+++|++++.|
T Consensus 363 c------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~-D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 363 C------LKSLSGHTGRVYSLIVDSE-NRLLSGSL-DTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSAD 432 (537)
T ss_pred e------eeeecCCcceEEEEEecCc-ceEEeeee-ccceEeecCCchhhhhhhhcCCcccccccc--cccceeEecccc
Confidence 3 3566889999999988774 34444443 689999999999 99999999999886664 568899999999
Q ss_pred CcEEEEECCCCcEEEEEeC-C-CCeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1302 SSLQIWLRGTQQKVGRISA-G-SKITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1302 GtVrVWDl~tg~~l~sl~~-h-s~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
|+|++||..+++++..+.+ + +.|+++.+....+++++.||++++||.
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 9999999999999999998 3 568988887678999999999999985
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.5e-22 Score=240.94 Aligned_cols=271 Identities=15% Similarity=0.227 Sum_probs=224.1
Q ss_pred CCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEccCCeE
Q 000694 1069 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-KTIGVWQMVQRKL 1145 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D-GtIrVWDl~tg~~ 1145 (1349)
...|+|.+|+.+ .|++|-..|...+|++....+ ++.+.-...+|..++|+..|++|+.|+.. |.+-||++.+...
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l--ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL--IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceE--EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 378999999876 599999999999999998554 88887677899999999999999987754 8999999988766
Q ss_pred EEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC-cceeeccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEc
Q 000694 1146 ELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAV 1218 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl 1218 (1349)
+. ...+|...+.++ +++|+.+++|+.||.|+|||... -....+..| +|+.+.| .+..+++.|-||+|+.||+
T Consensus 343 Vl-KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 343 VL-KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ee-eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 53 445778888875 59999999999999999999985 233334333 4999998 4455778999999999999
Q ss_pred cCCccccccccccccc-cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 000694 1219 SNNVEREIKAPFKSWR-LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1297 (1349)
Q Consensus 1219 ~t~~~~~i~~~lk~~~-~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaS 1297 (1349)
...+.- +.+. +......+++..|.+..+.+++-+.-.|.+|++++|+.+..+.||.++|.+++|+|+|..|++
T Consensus 422 kRYrNf------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNF------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ccccee------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 776422 1222 223456788999989888887766668999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCC-cEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1298 NSSASSLQIWLRGTQ-QKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1298 GS~DGtVrVWDl~tg-~~l~sl~~hs~VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
||+|.+|++||+-.. ..+.++.....++.++| +|+-|++++.||.|.+||+
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999996543 46677777777888776 5999999999999999996
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=5.7e-23 Score=229.27 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=217.3
Q ss_pred eeeecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1061 ILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
.+.++..|++.|.+++.+++ +++|||.|..-.+|++.++.. ...+.||+..|+++.|+.+|.+|+||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35568899999999999643 799999999999999999985 78899999999999999999999999999999999
Q ss_pred EccCCeEEEEEEecCCCCeE-EecCCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-eCCE-EEEEeCCCc
Q 000694 1139 QMVQRKLELIEVIATKEPIR-KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-VQGK-IYIGCMDSS 1212 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~-sLs~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~dg~-LlSGs~DGs 1212 (1349)
+..+|...+.......+.++ .+.|.+..+++|+.||.+.+|.+.. ....++.++. +++=.| |+|+ +++|..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99998876655533333332 4678899999999999999999986 5555666655 555566 7775 567999999
Q ss_pred EEEEEccCCccccccc-----ccc----------ccccCC-CCe-----------------------------EEE---E
Q 000694 1213 IQELAVSNNVEREIKA-----PFK----------SWRLQS-KPI-----------------------------NSL---V 1244 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~-----~lk----------~~~~h~-~~I-----------------------------~sL---~ 1244 (1349)
|++||..++....... ... ...+.. .++ .++ .
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 9999999884221100 000 000000 000 000 1
Q ss_pred EcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-
Q 000694 1245 VYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK- 1323 (1349)
Q Consensus 1245 ~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~- 1323 (1349)
++..... ++.+.-||+|.|||+....+.+.+. |...|..+.|-+ ..+|++++.||.|+.||.++|+.+.++.+|..
T Consensus 294 ~ss~lpL-~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPL-AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccch-hhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 1111111 2233357899999998876666655 888899999998 88999999999999999999999999999875
Q ss_pred eEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1324 ITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1324 VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
|.+++. +.++++++|.|++.+||+.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 888875 5779999999999999974
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=6.6e-25 Score=247.37 Aligned_cols=274 Identities=17% Similarity=0.216 Sum_probs=231.1
Q ss_pred cccCCCCEEEEEE-cC-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIY-YK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Laf-sd-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
...|.+.|..+.| ++ +.|++|+.|..|++|++..++...+.++.|..++|+++.|.++++++++++.|+.+++|+++.
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 4679999999999 44 689999999999999999888777889999999999999999999999999999999999988
Q ss_pred CeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC--cceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEc
Q 000694 1143 RKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAV 1218 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl 1218 (1349)
++... .+.+|.+.|++.. .....+++|+.|.+|+.||+.. +.+..+....+..+......+++|-.|++|++||.
T Consensus 251 ~r~~~-TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 251 LRLRH-TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhh-hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEec
Confidence 87653 5567999999865 3444499999999999999984 45555666666666666666778999999999999
Q ss_pred cCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC----CCCeEEEEEecCCCE
Q 000694 1219 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK----GTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1219 ~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH----~~~VtsLafSPDg~~ 1294 (1349)
++..... .... ++.|+++..+.++.-+.+++.+| ++.+.|+++......+... ....+.+.|||++.|
T Consensus 330 Rs~~~~~------sv~~-gg~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 330 RSADKTR------SVPL-GGRVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred cCCceee------Eeec-CcceeeEeeccCCeEEeeecCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 8875321 2223 35899999999999999887655 8999999999888877643 235889999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeC-C--CCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1295 LNYNSSASSLQIWLRGTQQKVGRISA-G--SKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l~sl~~-h--s~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
+++||.||.|+||++.++++...+.. + ..|++++|+ |..+++++.++.+.+|-
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999988885 2 249999996 88999999999999993
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=219.88 Aligned_cols=277 Identities=12% Similarity=0.192 Sum_probs=215.2
Q ss_pred eeecccCCCCEEEEEEcCC---EEEEEECCCcEEEEECCC-CceeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 000694 1062 LEASHKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKK-QSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIG 1136 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafsdg---~LaSGS~DGtIrVWDl~t-g~~~~i~tL-~gHss~VtsLafSpdg~~LaSGS~DGtIr 1136 (1349)
++...+|.+.|+.++|+++ .|||||.|..|++|+... ....+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3457899999999999765 599999999999999984 334344444 47999999999999999999999999999
Q ss_pred EEEccCCeEEEE-EEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC----cceeeccCC--CeEEEEe-e-CCEEE
Q 000694 1137 VWQMVQRKLELI-EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR----TLKDIYRSK--GIKSMSV-V-QGKIY 1205 (1349)
Q Consensus 1137 VWDl~tg~~~~~-~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~----~~~~~~~~~--~V~~La~-~-dg~Ll 1205 (1349)
||.-..+...+. .+.+|...|.+ ++.+|+++++++.|..|-+|.+.. ........| .|..+.+ | .+.|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 999887776554 44589999988 458999999999999999999873 222333333 3888888 4 46788
Q ss_pred EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE
Q 000694 1206 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 1285 (1349)
Q Consensus 1206 SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vts 1285 (1349)
+++.|++|++|+-..+..-. ....+.+|...+.++.|++.+..+++++ +|++++||-..+. .-..|...++.
T Consensus 167 S~SYDnTIk~~~~~~dddW~---c~~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~----~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWE---CVQTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTD----LSGMHSRALYD 238 (312)
T ss_pred EeccCCeEEEEeecCCCCee---EEEEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccC----cchhcccceEe
Confidence 99999999999887432111 1235578888999999999998777765 7899999986532 11236788999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC------cEEEEEe-CCC-CeEEEEEcC---CEEEEEECCCcEEEeeC
Q 000694 1286 MAVVEDFIYLNYNSSASSLQIWLRGTQ------QKVGRIS-AGS-KITSLLTAN---DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1286 LafSPDg~~LaSGS~DGtVrVWDl~tg------~~l~sl~-~hs-~VtsLs~dg---~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|. ...|+|++.|+.|++|....+ +.+.... .|+ .|+++.|++ ++|++|+.||.|++|..
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 9998 568999999999999965432 1222222 244 499999985 59999999999999975
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.8e-22 Score=240.11 Aligned_cols=269 Identities=16% Similarity=0.250 Sum_probs=218.6
Q ss_pred CCCEEEEEEc--CCEEEEEECC-CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1069 SGAVTALIYY--KGLLCSGFSD-GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1069 ~~~Vt~Lafs--dg~LaSGS~D-GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
...|..++|+ ++++|.|+.. |.+-||+..+... +...+||...+++++++|||++++||+.||.|+|||..+|-|
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 3578889996 6688888766 8999999998765 667799999999999999999999999999999999999988
Q ss_pred EEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC--cceeeccCCC--eEEEEe-eCCEEEE-EeCCC-cEEEE
Q 000694 1146 ELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKG--IKSMSV-VQGKIYI-GCMDS-SIQEL 1216 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~--V~~La~-~dg~LlS-Gs~DG-sI~IW 1216 (1349)
. ..+..|...|+.+ ...++.+++.+-||+|+.||+.+ ....+..... ..|++. +.|.+++ |+.|. .|.+|
T Consensus 385 ~-vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 385 F-VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred E-EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 6 4567888888874 58899999999999999999984 2222222222 677777 7777775 55554 69999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~L 1295 (1349)
++.+|+.. ..+.+|.+||.++.++|.+..+++++ .|++|++||+-. ...+.++. +...+.+++|+|||+-+
T Consensus 464 S~qTGqll------DiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 464 SVQTGQLL------DILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKEL 535 (893)
T ss_pred EeecCeee------ehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeE
Confidence 99999754 34689999999999999999888765 688999999844 33445554 67789999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeC---------------------CCCeEEEE--EcCCEEEEEECCCcEEEeeC
Q 000694 1296 NYNSSASSLQIWLRGTQQKVGRISA---------------------GSKITSLL--TANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg~~l~sl~~---------------------hs~VtsLs--~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+++..||.|.+||...+..+..+.+ ....+.++ +||..+++||....|++|+.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 9999999999999887776655442 01255565 47999999999999999985
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=2.8e-23 Score=250.05 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=166.9
Q ss_pred eecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
+...||.++|..+.|++ .+|+++|.|++||+|.+.+..+ +..++||..||+++.|+|.|-+++|||.|++.++|..
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeeccccee--EEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 44789999999999963 3799999999999999999765 6678899999999999999999999999999999998
Q ss_pred cCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEc
Q 000694 1141 VQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAV 1218 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl 1218 (1349)
+.....+ .+.+|...|.| |.|+.+++++ |+.|.+|++||+
T Consensus 523 d~~~PlR-ifaghlsDV~cv~FHPNs~Y~aT-------------------------------------GSsD~tVRlWDv 564 (707)
T KOG0263|consen 523 DHNKPLR-IFAGHLSDVDCVSFHPNSNYVAT-------------------------------------GSSDRTVRLWDV 564 (707)
T ss_pred ccCCchh-hhcccccccceEEECCccccccc-------------------------------------CCCCceEEEEEc
Confidence 7755443 23344444433 3344444444 555555556665
Q ss_pred cCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 000694 1219 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1298 (1349)
Q Consensus 1219 ~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG 1298 (1349)
.+|.. ++.|.+|..+|.+++++|++.++++++ +||.|.+||+.++..+..+.+|++.|.++.|+.||..||+|
T Consensus 565 ~~G~~------VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 565 STGNS------VRIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred CCCcE------EEEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEec
Confidence 55543 256688999999999999999999876 68899999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCC
Q 000694 1299 SSASSLQIWLRGT 1311 (1349)
Q Consensus 1299 S~DGtVrVWDl~t 1311 (1349)
|.|.+|++||+..
T Consensus 638 g~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 638 GADNSVRLWDLTK 650 (707)
T ss_pred CCCCeEEEEEchh
Confidence 9999999999654
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=3.9e-23 Score=229.15 Aligned_cols=237 Identities=16% Similarity=0.273 Sum_probs=204.7
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEe
Q 000694 1103 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1103 ~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWD 1180 (1349)
+.+.++||.+.|.|+++.|.+++++||+.|++|+|||+.+|++. ..+.+|...|.. ++....++++++.|+.|+.||
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34567899999999999999999999999999999999999876 466778888887 457788999999999999999
Q ss_pred cCC-cceeeccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1181 SSR-TLKDIYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1181 l~~-~~~~~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
+.. .....+.+| +|.|++. ....+++|+.|.++++||+++... +..+.+|..+|.++.+.|-..-++++
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce------EEEecCCCCcceeEEeecCCCceEEe
Confidence 983 444444443 4999998 367788999999999999998742 24568899999999999776666666
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc-CCE
Q 000694 1256 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA-NDI 1333 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~d-g~~ 1333 (1349)
+ .|++|++||+..|+...++..|...|.+++.+|....+|+++.|. |+-|++..|..+..+.+|.. |++++.+ ..+
T Consensus 296 S-~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 S-HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred c-CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCce
Confidence 5 588999999999999999999999999999999999999999876 89999999999999998877 7999875 669
Q ss_pred EEEEECCCcEEEeeC
Q 000694 1334 VLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1334 LaSGS~DGtIrIWD~ 1348 (1349)
+++|++.|.|.+||-
T Consensus 374 ~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDW 388 (460)
T ss_pred EEEcCCceEEEEEec
Confidence 999999999999984
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=223.00 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=226.5
Q ss_pred ecccCCCCEEEEEEc----CCE-EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1064 ASHKCSGAVTALIYY----KGL-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs----dg~-LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
+-+||+.+|-.++|+ +|+ |++++.||.=.+-+-++|.. +.+|.||++.|.+...+.+...-++++.|-+-+||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 457999999999995 565 99999999999999999988 89999999999999999998889999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCc--ceeeccCC--CeEEEEe--eCCEEEEEeCC
Q 000694 1139 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYRSK--GIKSMSV--VQGKIYIGCMD 1210 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~--~~~~~~~~--~V~~La~--~dg~LlSGs~D 1210 (1349)
|.-+|..+..+ .|+..|.+ |+.+.+.+++|+.+..++|||+++. ......++ +|+.+.| .+..+++.+.|
T Consensus 87 ~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 87 DAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 99998765433 45555554 6788999999999999999999852 22222233 3888888 77888999999
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
++|++||.+++..... -.-..+++++.+++++.++... .++.|.+||..+..+++.+.. ...|.+...+|
T Consensus 165 ~tVRLWD~rTgt~v~s-------L~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P 234 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS-------LEFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP 234 (334)
T ss_pred CceEEEEeccCcEEEE-------EecCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccC-ccccccccccC
Confidence 9999999999964322 1124778999999998877655 477899999999888887763 45688999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEE-eC-CCCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQKVGRI-SA-GSKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~~l~sl-~~-hs~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
+..++++|+.|+.++.||..+|+.+..+ ++ +++|.|+.|+ |..-++|++||+|++|-
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999999999999886 44 6779999875 77999999999999995
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.4e-23 Score=229.95 Aligned_cols=251 Identities=16% Similarity=0.192 Sum_probs=211.9
Q ss_pred CCceEEEEEeeee---eecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC
Q 000694 1050 NISRISCVHTQIL---EASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE 1124 (1349)
Q Consensus 1050 ~~~~w~~~~t~tl---~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~ 1124 (1349)
.+.++.+++..+. ...+||.+.|..|+|+ +.++++++.|-.+++||..+. ..+++.+.||...|.+++|-|.|.
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCC
Confidence 3455666666554 4578999999999996 347999999999999999874 344777889999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc-ceeec--cCCCeEEEEe
Q 000694 1125 SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT-LKDIY--RSKGIKSMSV 1199 (1349)
Q Consensus 1125 ~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~-~~~~~--~~~~V~~La~ 1199 (1349)
+++|++.|.+|+.|++.+|.++. .+.+|...|..+. .+|..+++++.|.++++|-+... .+... +.+.|.|+++
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~w 285 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAW 285 (406)
T ss_pred eeeecccccceeEEecccceeEE-eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEe
Confidence 99999999999999999999874 5678888888765 67788899999999999998743 23333 3445888877
Q ss_pred -eC----------C------EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 000694 1200 -VQ----------G------KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 1262 (1349)
Q Consensus 1200 -~d----------g------~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtI 1262 (1349)
|. + .+.+|+.|++|++||+.++... -.+.+|...|..++++|.+.|+++.. ||+++
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktl 358 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTLVGHDNWVRGVAFSPGGKYILSCA-DDKTL 358 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEEecccceeeeeEEcCCCeEEEEEe-cCCcE
Confidence 21 1 4667999999999999998432 24478999999999999999999876 79999
Q ss_pred EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1263 KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1263 rIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
++||++++++...+..|..-|++++|+.+..+++||+-|.++++|.-
T Consensus 359 rvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999999999964
No 42
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.6e-22 Score=237.79 Aligned_cols=270 Identities=16% Similarity=0.213 Sum_probs=225.9
Q ss_pred eecccCCCCEEEEEEcCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEE-EEEcC-CCCEEEEEeCCCeEEEEE
Q 000694 1063 EASHKCSGAVTALIYYKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFE-PGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~Vts-LafSp-dg~~LaSGS~DGtIrVWD 1139 (1349)
....||...|..+++.++ .+++||.||++++|+-..++....+.+.+|.+-|.+ +++.+ ++-.+++|+.|++|.+|.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 346799999999999654 699999999999999988887677788899998888 88875 444699999999999999
Q ss_pred ccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeeccCCC--eEEEEe-eCCEEEEEeCCCcEEE
Q 000694 1140 MVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG--IKSMSV-VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~--V~~La~-~dg~LlSGs~DGsI~I 1215 (1349)
..+.... ..+.+|+..|.+++ .....+++|++|.++++|........ ..+|. |+.+.. +++.+++||.|.+|++
T Consensus 88 ~~~~~P~-~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 88 LSQAEPL-YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPENTYVTGSADKTIKL 165 (745)
T ss_pred cCCCCch-hhhhccccceeeeecCCcCceEecccccceEEecchhhhcc-cCCcchheeeeeecCCCcEEeccCcceeee
Confidence 9887765 46779999999988 44555899999999999988643333 44443 888877 8889999999999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~L 1295 (1349)
|.-.+. .+.+.+|...|+.+++-++..++-++ .||.|++|++ +|.++..+.+|+..|++++..+++..+
T Consensus 166 Wk~~~~--------l~tf~gHtD~VRgL~vl~~~~flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 166 WKGGTL--------LKTFSGHTDCVRGLAVLDDSHFLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLI 234 (745)
T ss_pred ccCCch--------hhhhccchhheeeeEEecCCCeEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeE
Confidence 976332 35778999999999999997665543 5899999999 788999999999999999988999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEE-cCCEEEEEECCCcEEEee
Q 000694 1296 NYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLT-ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~-dg~~LaSGS~DGtIrIWD 1347 (1349)
+|+|+|++++||+.. ++.+.+.... .|+++.+ .+.-+++|++||.||||.
T Consensus 235 vs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred EEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 999999999999877 7888888765 5888764 455678999999999996
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.3e-22 Score=239.25 Aligned_cols=271 Identities=13% Similarity=0.169 Sum_probs=231.3
Q ss_pred cccCCCCEEEEEEcCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1065 SHKCSGAVTALIYYKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
..||...|.+++++++ .+...+..++|++|+..+.++ ++++. .+.+.+..|.|.++++++|...|.+.++|+.+.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcce--eEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 4799999999999755 555555678999999999876 88886 448999999999999999999999999999887
Q ss_pred eEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecC------Cccee---------eccCCCeEEEEe-eCCEEE
Q 000694 1144 KLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS------RTLKD---------IYRSKGIKSMSV-VQGKIY 1205 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~------~~~~~---------~~~~~~V~~La~-~dg~Ll 1205 (1349)
... .....|.+.|++++ +++..+++|+.|.+|++||.. +.... ..-...|.|+.+ |||+++
T Consensus 445 ~l~-Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 445 SLV-ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhh-hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 654 44558999999865 999999999999999999975 11111 111234889999 899877
Q ss_pred E-EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE
Q 000694 1206 I-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1206 S-Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vt 1284 (1349)
+ +--|.+|++|-+.+.+.. -.+.+|.-||.++.++|+...+++++ .|++|++|-++-|.|-+.+.+|...|.
T Consensus 524 aVsLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred EEEeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeEEecc-CCCceEEeccccchhhhhhhcccCcee
Confidence 6 667999999999887421 24578999999999999999999887 478999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEEee
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~VtsLs~--dg~~LaSGS~DGtIrIWD 1347 (1349)
++.|-|+..++.++|.||.|+-||-.+.+.+..+.+| ..|+|++. +|.++++++.|.+|++|.
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999999999999999975 55988874 688999999999999996
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=2.3e-21 Score=211.96 Aligned_cols=245 Identities=22% Similarity=0.295 Sum_probs=196.4
Q ss_pred EEEEEeeeeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 000694 1054 ISCVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA 1131 (1349)
Q Consensus 1054 w~~~~t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~ 1131 (1349)
|+...........+|...+.++.|. ++ .+++++.||.|++||+.+++. +..+.+|...|.++.|+|++.++++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 113 (289)
T cd00200 36 WDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC--VRTLTGHTSYVSSVAFSPDGRILSSSSR 113 (289)
T ss_pred EEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc--eEEEeccCCcEEEEEEcCCCCEEEEecC
Confidence 3333333345567899999999995 44 899999999999999998654 6677889999999999999998998888
Q ss_pred CCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC-cceeeccC--CCeEEEEe-eCC-EE
Q 000694 1132 DKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR-TLKDIYRS--KGIKSMSV-VQG-KI 1204 (1349)
Q Consensus 1132 DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~--~~V~~La~-~dg-~L 1204 (1349)
||.|++||+.+++... ....|...+.++. +++..+++++.++.+++||+.. ........ ..+.++.+ +++ .+
T Consensus 114 ~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 114 DKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred CCeEEEEECCCcEEEE-EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEE
Confidence 9999999998777654 3346777788754 6667777777799999999973 33222222 24889998 666 77
Q ss_pred EEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE
Q 000694 1205 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1205 lSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vt 1284 (1349)
++++.||.|++||++++... ..+..+...+.++.+++++.++++++ .++.+++||..++.....+.+|...|.
T Consensus 193 ~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~i~ 265 (289)
T cd00200 193 LSSSSDGTIKLWDLSTGKCL------GTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECVQTLSGHTNSVT 265 (289)
T ss_pred EEecCCCcEEEEECCCCcee------cchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeEEEccccCCcEE
Confidence 78888999999999876432 23345667899999999876666654 578999999999889999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
+++|+|++.++++++.||.|++|+
T Consensus 266 ~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 266 SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999996
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=236.12 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=199.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCccee-
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD- 1187 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~- 1187 (1349)
..+|..|.|.|+|+.|++|+..|.+.+|+..+-... .....|..+|.+ ++.++..+++|+.+|.|++|+.+-....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH-HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 458999999999999999999999999997432221 244579999998 5589999999999999999999854433
Q ss_pred eccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 000694 1188 IYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 1263 (1349)
Q Consensus 1188 ~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIr 1263 (1349)
+...+ .|++++| .|.+++++++||+|++||....+.. +.+.+|+..+.+++|||....+++++ +|+.|+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee------~vL~GHgwdVksvdWHP~kgLiasgs-kDnlVK 247 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE------RVLRGHGWDVKSVDWHPTKGLIASGS-KDNLVK 247 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh------heeccCCCCcceeccCCccceeEEcc-CCceeE
Confidence 33333 3999999 5778999999999999999877533 34589999999999999988888876 566999
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc---CCEEEEEEC
Q 000694 1264 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA---NDIVLCGTE 1339 (1349)
Q Consensus 1264 IWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~d---g~~LaSGS~ 1339 (1349)
+||.+++.++.++.+|...|.++.|+|++++|+|+|.|..++++|+++.+.+.++++|.. |+++.|+ ..+|.+|+.
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999999999999999999999999999999999999999999999999999999998776 9999986 669999999
Q ss_pred CCcEEEeeC
Q 000694 1340 TGLIKGWIP 1348 (1349)
Q Consensus 1340 DGtIrIWD~ 1348 (1349)
||.|..|..
T Consensus 328 Dgsvvh~~v 336 (464)
T KOG0284|consen 328 DGSVVHWVV 336 (464)
T ss_pred CCceEEEec
Confidence 999999964
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=9.9e-22 Score=211.38 Aligned_cols=275 Identities=14% Similarity=0.152 Sum_probs=228.6
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcc
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~ 1141 (1349)
.++|...|.+|+|+ +| .+++|+.|+++.+|++...+...-....||.+.|-.++|+|.. ..+++++.|.+|++||++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 57899999999995 55 6999999999999999887654444568999999999999754 679999999999999999
Q ss_pred CCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc-c-eeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEE
Q 000694 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT-L-KDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELA 1217 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~-~-~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWD 1217 (1349)
.+++.........+....++|+|+++++++.|..|...|.+.. . ........+..+.+ +++.++.....|.|.|..
T Consensus 96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs 175 (313)
T KOG1407|consen 96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS 175 (313)
T ss_pred cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence 9998876666656666679999999999999999999998742 2 22222233566666 555666666779999988
Q ss_pred ccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 000694 1218 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1297 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaS 1297 (1349)
....+ ++..+..|.....+|.+.|++.++++++. |..+.+||+..--+.+.+..+.-+|+.+.||.||++||+
T Consensus 176 ypsLk------pv~si~AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 176 YPSLK------PVQSIKAHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred ccccc------cccccccCCcceEEEEECCCCceEeeccc-cceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 76543 33556788888899999999999998874 779999999998899999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECC---------CcEEEe
Q 000694 1298 NSSASSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTET---------GLIKGW 1346 (1349)
Q Consensus 1298 GS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~--~LaSGS~D---------GtIrIW 1346 (1349)
||+|..|-|=++++|..+..++..++...++|+++ +||.++.| |++++|
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred cCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 99999999999999999999999999999999977 66666554 577776
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=4.9e-21 Score=221.24 Aligned_cols=329 Identities=14% Similarity=0.175 Sum_probs=248.1
Q ss_pred EeeeccCCcceeeec---cccccchhhhccccceeecccccccccccccCCCc---eEEEEEeeeeeec---ccCCCCEE
Q 000694 1003 CIYNYASGKGMQKLI---RSSEGVRESLRRLSNVTWMAEELHKAADYYLPNIS---RISCVHTQILEAS---HKCSGAVT 1073 (1349)
Q Consensus 1003 sL~nl~k~egL~~L~---~~s~~v~~sLR~lk~vsw~a~ellkv~~~~~p~~~---~w~~~~t~tl~~~---~gH~~~Vt 1073 (1349)
.+|+-..++-+.++- +|...++. ++|.|+....+. .+.+. .|+......+.+. ..-.+.-.
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfa-------lsWsPDs~~~~T---~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFA-------LSWSPDSTQFLT---VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV 284 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEE-------EEECCCCceEEE---ecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence 456655666666666 77777777 899998743332 23344 4443333333322 11224445
Q ss_pred EEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC
Q 000694 1074 ALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1074 ~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h 1153 (1349)
.+-|.++.|++-+.+|+|..++...... .+.+.||...|+++..+|++++|+||+.||.|.-||..+|..-...-..|
T Consensus 285 G~lWqkd~lItVSl~G~in~ln~~d~~~--~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 285 GCLWQKDHLITVSLSGTINYLNPSDPSV--LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEEEeCCeEEEEEcCcEEEEecccCCCh--hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence 5667788999999999999999998774 78899999999999999999999999999999999999887654444678
Q ss_pred CCCeEEecCCC-CEEEEEecCCeEEEEecCCc-------------ce-------------------eecc----------
Q 000694 1154 KEPIRKLDTYG-KTIFASTQGHRMKVIDSSRT-------------LK-------------------DIYR---------- 1190 (1349)
Q Consensus 1154 ~~~V~sLs~~g-~~LvsgS~DgtIkVWDl~~~-------------~~-------------------~~~~---------- 1190 (1349)
...|.++.... ..+++++.|.++++.++.+. +. .+..
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~ 442 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI 442 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence 89999988655 89999999999999876410 00 0000
Q ss_pred CCCeEEEEe-eCCE-EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1191 SKGIKSMSV-VQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1191 ~~~V~~La~-~dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
.....++++ +++. ++.|+.||.|++|.+..+..... .....|..+|+.++++|++.+++++. ..+.+.+||..
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~~~~~h~a~iT~vaySpd~~yla~~D-a~rkvv~yd~~ 517 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----AKLLEHRAAITDVAYSPDGAYLAAGD-ASRKVVLYDVA 517 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----eeeecccCCceEEEECCCCcEEEEec-cCCcEEEEEcc
Confidence 011445555 5554 55699999999999988653222 23356789999999999999999874 35689999998
Q ss_pred CCCeEE-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CC-CeEEEEE-cCCEEEEEECCCcEE
Q 000694 1269 RKPQIS-IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-GS-KITSLLT-ANDIVLCGTETGLIK 1344 (1349)
Q Consensus 1269 t~~li~-tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs-~VtsLs~-dg~~LaSGS~DGtIr 1344 (1349)
+++... .+.-|+..|.+++|+|+..++||||-|-.|.||++......-.+++ |. .|+.+.| +...+++.+.|..|+
T Consensus 518 s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK 597 (603)
T KOG0318|consen 518 SREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIK 597 (603)
T ss_pred cCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeE
Confidence 876643 3345999999999999999999999999999999987765555553 33 3999999 688999999999999
Q ss_pred EeeC
Q 000694 1345 GWIP 1348 (1349)
Q Consensus 1345 IWD~ 1348 (1349)
+|+.
T Consensus 598 ~W~v 601 (603)
T KOG0318|consen 598 VWNV 601 (603)
T ss_pred Eecc
Confidence 9985
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.6e-22 Score=231.25 Aligned_cols=282 Identities=12% Similarity=0.122 Sum_probs=228.3
Q ss_pred cceeecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEec
Q 000694 1031 SNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK 1108 (1349)
Q Consensus 1031 k~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~ 1108 (1349)
|.+..+|.+-......+.+....|+......+..++-..-+|++..|- .+++++|+.|+.|+||+.++++. +++|.
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek--V~~Fe 94 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK--VKTFE 94 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee--eEEee
Confidence 345666666444445555666666655555556677777899988883 56899999999999999999765 89999
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCc-
Q 000694 1109 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT- 1184 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~- 1184 (1349)
+|.+.|.|++.+|...+++|+|+|-+|++||.+.+-.....+.+|...|.++. .+.+.+++++-|++|+||.+...
T Consensus 95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC
Confidence 99999999999999999999999999999999876555567778999998865 46789999999999999999742
Q ss_pred ceeecc--CCCeEEEEe-eCC---EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC
Q 000694 1185 LKDIYR--SKGIKSMSV-VQG---KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 1258 (1349)
Q Consensus 1185 ~~~~~~--~~~V~~La~-~dg---~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d 1258 (1349)
...+.. .++|+|+.+ +.| ++++|++|.+|++||..+.... +.+.+|...|..+.+||....+++++ +
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV------~TLeGHt~Nvs~v~fhp~lpiiisgs-E 247 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV------QTLEGHTNNVSFVFFHPELPIIISGS-E 247 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH------HHhhcccccceEEEecCCCcEEEEec-C
Confidence 233333 346999999 665 8999999999999999987543 45688999999999999998888875 7
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Q 000694 1259 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 1322 (1349)
Q Consensus 1259 DgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs 1322 (1349)
||++++|+..+.+...++.-....+++++-.+.+..++.|...|.|. ..+...++..++...+
T Consensus 248 DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~g 310 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNG 310 (794)
T ss_pred CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCc
Confidence 89999999999888888887788999999999999999998878764 4556666665555433
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=243.17 Aligned_cols=253 Identities=16% Similarity=0.231 Sum_probs=210.9
Q ss_pred CceEEEEEeeeeee-cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE
Q 000694 1051 ISRISCVHTQILEA-SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL 1127 (1349)
Q Consensus 1051 ~~~w~~~~t~tl~~-~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La 1127 (1349)
...|++...+.+.. +.||.+.|++++++ ++++++|+.|.+++|||..+|.+ .+++.||.+.|.++.. .+.+++
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--~~~l~gh~stv~~~~~--~~~~~~ 305 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--THSLQGHTSSVRCLTI--DPFLLV 305 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--EEEecCCCceEEEEEc--cCceEe
Confidence 35778888877777 99999999999997 77999999999999999999987 8899999999999987 455688
Q ss_pred EEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC-CcceeeccCCC--eEEEEeeC-CE
Q 000694 1128 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG--IKSMSVVQ-GK 1203 (1349)
Q Consensus 1128 SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~--V~~La~~d-g~ 1203 (1349)
+|+.|.+|+||++.++.++... .+|.++|.++..+++.+++|+.|++|++||.. ........+|. |.++.+.. ..
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~ 384 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENR 384 (537)
T ss_pred eccCCceEEEEeccCcceEEEe-ccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcce
Confidence 9999999999999999887533 44999999999999999999999999999998 34444454544 99998866 89
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCC
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTT 1282 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g-H~~~ 1282 (1349)
+++|+.|++|++||+++.. .....+.+|...+..+.+... ++++++ .|++|++||..+++++.++.+ |...
T Consensus 385 ~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~--~Lvs~~-aD~~Ik~WD~~~~~~~~~~~~~~~~~ 456 (537)
T KOG0274|consen 385 LLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDN--FLVSSS-ADGTIKLWDAEEGECLRTLEGRHVGG 456 (537)
T ss_pred EEeeeeccceEeecCCchh-----hhhhhhcCCcccccccccccc--eeEecc-ccccEEEeecccCceeeeeccCCccc
Confidence 9999999999999999983 112455677776765555443 334333 478999999999999999998 6788
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 000694 1283 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1283 VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl 1318 (1349)
|+.+++. ...+++++.||++++||+++++....+
T Consensus 457 v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 457 VSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 8888876 567888899999999999999988876
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.4e-23 Score=229.50 Aligned_cols=269 Identities=14% Similarity=0.214 Sum_probs=204.4
Q ss_pred cccCCCCEEEEEEcCC---EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1065 SHKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg---~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
..||.++|.|++-+++ .+++|+.||.|+|||+....+ ..+++.|.+.|..|+++. ..++++|.|++|+.|.++
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4799999999999765 499999999999999998766 889999999999999976 669999999999999986
Q ss_pred CCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcc--e-eeccCCCeEEEEe-eC--CEEEEEeCCCcEEE
Q 000694 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--K-DIYRSKGIKSMSV-VQ--GKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~--~-~~~~~~~V~~La~-~d--g~LlSGs~DGsI~I 1215 (1349)
.. . ......+..+..++.....-..++.+..|.|||..+.. . ..+....|.++.+ |. ..|++|+.|++|.+
T Consensus 138 ~~-p--~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 138 GP-P--LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred CC-c--ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 53 2 22233444555565433222333344579999997422 2 2233445888888 32 34556779999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
||++++....- + ..+-.-+.|+|+|.. +.++.+.+|..++.||++. ..++..+.+|.+.|.+++|||.|+-
T Consensus 215 yD~R~~~Pl~K-----V--i~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 215 YDLRQASPLKK-----V--ILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred EecccCCccce-----e--eeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 99998853211 0 012334678999954 4444556899999999976 6778889999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1295 LNYNSSASSLQIWLRGTQQKVGRISA--GSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l~sl~~--hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+++||.|.+|+||....+.....+.. -..|.|+.|+ .+++++||.||.|++|..
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999999888765544433 2248999984 789999999999999963
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-21 Score=235.34 Aligned_cols=249 Identities=16% Similarity=0.235 Sum_probs=204.5
Q ss_pred eeecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1062 LEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
+..+.+|.|+|+.++|++. .+++||.|-.|+||+..+.++ +.++.||-+.|..+.|++.-.+++|+|+|.||+||+
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--hhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 3557899999999999754 799999999999999999776 889999999999999999999999999999999999
Q ss_pred ccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcc------------------------------ee
Q 000694 1140 MVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL------------------------------KD 1187 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~------------------------------~~ 1187 (1349)
+.++++++ ...+|...|.| |.|..+.++++|-|.+|+|||+.+-. +.
T Consensus 122 wqsr~~ia-vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 122 WQSRKCIA-VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred ccCCceEE-EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 99999885 56788888887 67888999999999999999987310 01
Q ss_pred eccCC--CeEEEEe-eC-CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 000694 1188 IYRSK--GIKSMSV-VQ-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 1263 (1349)
Q Consensus 1188 ~~~~~--~V~~La~-~d-g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIr 1263 (1349)
+..+| +|+-.+| |. ..+++|++|..|++|.+...+.-++ ....+|...|.++-|||....+++.+ +|++|+
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~lIlSns-EDksir 275 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDLILSNS-EDKSIR 275 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccceeEecC-CCccEE
Confidence 11122 3666666 33 4577899999999999976643322 34478999999999999888777754 799999
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1264 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1264 IWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
+||+...+.+.+++...+..+.++.+|..+++++|- |+-+.||.+..-.+...+.
T Consensus 276 VwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred EEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEc
Confidence 999999999999987788999999999999998876 5556688766544444443
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=1.1e-20 Score=245.52 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=186.6
Q ss_pred CCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCC
Q 000694 1068 CSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1068 H~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSp-dg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
+...|.+++|+ +.+|++|+.||+|++||+.+++. +..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 45689999994 34799999999999999998764 778899999999999996 7889999999999999999988
Q ss_pred eEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcc--eeeccC--CCeEEEEe-eCCEEEEEeCCCcEEE
Q 000694 1144 KLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTL--KDIYRS--KGIKSMSV-VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~--~~V~~La~-~dg~LlSGs~DGsI~I 1215 (1349)
....... +...+.++. +++..+++|+.||.|++||+.... .....+ ..|.++.| +++.+++|+.|++|++
T Consensus 609 ~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 609 VSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred cEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 7654332 234566643 568899999999999999997422 222222 34899998 5667889999999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-------------cCCCCC
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-------------PEKGTT 1282 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl-------------~gH~~~ 1282 (1349)
||+..+.......+...+.+|...+..+.+++++.++++++ .|+.|++|+......+..+ ..|...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99976421111123345678888899999999988888776 6889999998655433221 234567
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1283 IQAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1283 VtsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
|.+++|+|++.++++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999986
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=1.4e-22 Score=216.28 Aligned_cols=241 Identities=15% Similarity=0.192 Sum_probs=206.4
Q ss_pred ecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1064 ASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
++.||.+.|++.+.+.+ +-|+++.|-+-+|||.-+|.. +++|. |+.-|.+++|+.|.++|+||+.++.+||+|++
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 36899999999999765 589999999999999999875 77776 99999999999999999999999999999998
Q ss_pred CCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC--cceeeccCCCeEEEEe-eCCEEEEEeCCCcEEEE
Q 000694 1142 QRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IW 1216 (1349)
..+-....+.+|.+.|.. |....+.+++.+.|++|++||... ..+.+...+.|+++.+ ++|.+++....+.|.+|
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEe
Confidence 877666777889999987 456788899999999999999983 5566777888999999 99999999999999999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEEEEEecCCCEE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl-~gH~~~VtsLafSPDg~~L 1295 (1349)
|..+....+ .+. -...|.+...+|+..+.+++ .+|..++.||..++..+..+ ++|.++|.|+.|+|||...
T Consensus 211 daksf~~lK------s~k-~P~nV~SASL~P~k~~fVaG-ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 211 DAKSFGLLK------SYK-MPCNVESASLHPKKEFFVAG-GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred cccccccee------ecc-CccccccccccCCCceEEec-CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 998874321 111 23557888889987655554 47889999999999988886 8999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEE
Q 000694 1296 NYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg~~l 1315 (1349)
++||.||+|++|.+..++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999987766554
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=7.3e-21 Score=232.02 Aligned_cols=241 Identities=17% Similarity=0.266 Sum_probs=197.0
Q ss_pred eeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1061 ILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
+.....+|...|.+++|+ ++ ++++|+.|++|+|||+.... ..+++++||...|++++|+|+|+.+++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 344458999999999995 55 79999999999999994432 3488999999999999999999999999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcce---eecc---CC-CeEEEEe-eCC-EEEEE
Q 000694 1139 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLK---DIYR---SK-GIKSMSV-VQG-KIYIG 1207 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~---~~~~---~~-~V~~La~-~dg-~LlSG 1207 (1349)
|++++++. ..+.+|.+.|.+ +.++++.+++++.|+.|++||+.+... .... .. .++++.+ +++ .++++
T Consensus 274 d~~~~~~~-~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 274 DVRTGECV-RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred eccCCeEE-EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 99998876 456678888887 558999999999999999999986442 1221 12 4688888 665 56679
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCe
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTI 1283 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~---~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH-~~~V 1283 (1349)
+.|+.+++||+..+... +.+.+|.. .+.+...++++.++.+++ .|+.|++||..++..+..+.+| ...+
T Consensus 353 ~~d~~~~~w~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~~~~l~~h~~~~~ 425 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSV------GTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGILQRLEGHSKAAV 425 (456)
T ss_pred cCCCeEEEEEccCCcce------eeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccchhhhhcCCCCCce
Confidence 99999999999987533 22344433 444555567888888776 6889999999999999999999 8899
Q ss_pred EEEEEecCCCEEEEEe--CCCcEEEEECC
Q 000694 1284 QAMAVVEDFIYLNYNS--SASSLQIWLRG 1310 (1349)
Q Consensus 1284 tsLafSPDg~~LaSGS--~DGtVrVWDl~ 1310 (1349)
..++++|...++++++ .|+.+++|...
T Consensus 426 ~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 426 SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999998 79999999754
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.8e-21 Score=204.14 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=195.3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEec
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl 1181 (1349)
.+.+..|.++|..+.|+-+|++.++++.|++|++|+...|.++. ...+|...|... ..++..+++++.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 56778999999999999999999999999999999999998874 556788888774 478899999999999999999
Q ss_pred C-CcceeeccCCC--eEEEEe-eC-CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEe
Q 000694 1182 S-RTLKDIYRSKG--IKSMSV-VQ-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 1256 (1349)
Q Consensus 1182 ~-~~~~~~~~~~~--V~~La~-~d-g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S 1256 (1349)
+ +.....+.+|. |+.+.| .+ ..+++|+.|.++++||-++.... |++.++.....|.++.+....+..++
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e----PiQildea~D~V~Si~v~~heIvaGS-- 162 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE----PIQILDEAKDGVSSIDVAEHEIVAGS-- 162 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC----ccchhhhhcCceeEEEecccEEEeec--
Confidence 8 45555555554 999999 33 45667999999999999987644 33566666788999998877654443
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC---eEEEEE--cC
Q 000694 1257 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK---ITSLLT--AN 1331 (1349)
Q Consensus 1257 ~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~---VtsLs~--dg 1331 (1349)
-||+++.||++.|+....+- +.+|+++.|++|++....++.|+++++.|..+|+.+..+.+|.. -...++ +.
T Consensus 163 -~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred -cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 38899999999998776655 56899999999999999999999999999999999999998654 122223 35
Q ss_pred CEEEEEECCCcEEEeeCC
Q 000694 1332 DIVLCGTETGLIKGWIPL 1349 (1349)
Q Consensus 1332 ~~LaSGS~DGtIrIWD~L 1349 (1349)
..+++|++||.|++||.+
T Consensus 240 thV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeEEeccCCceEEEEEec
Confidence 699999999999999974
No 56
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=206.68 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=201.8
Q ss_pred eecccCCCCEEEEEEcC---CEEEEEECCCcEEEEECCC-CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1063 EASHKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsd---g~LaSGS~DGtIrVWDl~t-g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
+.-..-.+.|.+++|++ +.+++||.||+||+|++.. |.... +....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 33445678999999964 4688999999999999987 34322 4456799999999999999999999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEEec--C--CCCEEEEEecCCeEEEEecCCcc--eeeccCCCeEEEEeeCCEEEEEeCCCc
Q 000694 1139 QMVQRKLELIEVIATKEPIRKLD--T--YGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSVVQGKIYIGCMDSS 1212 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~sLs--~--~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~~~V~~La~~dg~LlSGs~DGs 1212 (1349)
|+.+++. ..+..|..+|.++. . ....+++|++|.+|+.||.+... ....-...+.++.+....++.++.++.
T Consensus 100 DL~S~Q~--~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 100 DLASGQV--SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred EccCCCe--eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCc
Confidence 9999976 46678999998855 2 33478999999999999998432 222223347777777777888999999
Q ss_pred EEEEEccCCcc--ccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--CeEEEecCCCC-------
Q 000694 1213 IQELAVSNNVE--REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK--PQISIAPEKGT------- 1281 (1349)
Q Consensus 1213 I~IWDl~t~~~--~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~--~li~tl~gH~~------- 1281 (1349)
|.+|+++.+.. +.+..+ -...+++++.+++....+.++. .|.+-+..++.+ +.-.+|+.|..
T Consensus 178 i~vynL~n~~te~k~~~Sp------Lk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESP------LKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EEEEEcCCCcchhhhhcCc------ccceeeEEEEEecCCceEeeee-cceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 99999987632 222222 2356788888877554444444 567888887765 33445666652
Q ss_pred --CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEE
Q 000694 1282 --TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCG 1337 (1349)
Q Consensus 1282 --~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~VtsLs~d--g~~LaSG 1337 (1349)
.|++++|+|.-..|+|.|.||+..+||......+.+...+ .+|+|.+|+ |.+++-+
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 5788999999999999999999999999888888887654 459999985 6666543
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=213.94 Aligned_cols=277 Identities=15% Similarity=0.165 Sum_probs=218.7
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEE------EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLV------WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i------~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrV 1137 (1349)
.|....+.|..|+ || ++++|+.||.|.|||..+|+...- ..|--|..+|.|+.|+.|...+++|+.||.|+|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 3556678899995 55 799999999999999998875321 123457899999999999999999999999999
Q ss_pred EEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecC-CcceeeccCCC--eEEEEe-eCC-EEEEEeCC
Q 000694 1138 WQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG--IKSMSV-VQG-KIYIGCMD 1210 (1349)
Q Consensus 1138 WDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~--V~~La~-~dg-~LlSGs~D 1210 (1349)
|.+.+|.++..+...|...|+++ +.++..+++++.|.++++.-+. +.....+.+|. |+...| ++| .+++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999999887777899999984 5789999999999999999887 45555555554 888888 555 68889999
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeEEE
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAM 1286 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i-~las~S~dDgtIrIWDl~t~~li~tl~g---H~~~VtsL 1286 (1349)
|+|++|+..+.+......+ .+...+|+++-.-|... ..+.+. ..+++.+.++. |++++.+.. .++...+.
T Consensus 370 gtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred ccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEc-CCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 9999999988754322111 23456777777666532 233332 45689998876 567777753 23456677
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
..+|.|.++.+.+.|+.++.|...+|+...++..|.. |..++- +.+.+++-++||.+++|.|
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 7899999999999999999999999999999997776 777774 4669999999999999975
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=3.6e-20 Score=207.05 Aligned_cols=245 Identities=13% Similarity=0.175 Sum_probs=191.8
Q ss_pred EEEEEeeeeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 000694 1054 ISCVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA 1131 (1349)
Q Consensus 1054 w~~~~t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~ 1131 (1349)
|+...........||.+.|+|+.|+ +| +||||+.+|.|+||+..++.. ...+.+.-+.|.-+.|+|.+..|+.|+.
T Consensus 91 W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp~a~illAG~~ 168 (399)
T KOG0296|consen 91 WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHPRAHILLAGST 168 (399)
T ss_pred EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--EEEeecccCceEEEEecccccEEEeecC
Confidence 4444444445568999999999995 55 799999999999999999875 4555556678899999999999999999
Q ss_pred CCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCc-ceeecc------------------
Q 000694 1132 DKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR------------------ 1190 (1349)
Q Consensus 1132 DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~------------------ 1190 (1349)
||.+.+|.+.++. .+..+.+|+.++++ |.|+|+.++++..||+|++||.... +.....
T Consensus 169 DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 169 DGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGST 247 (399)
T ss_pred CCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccce
Confidence 9999999998853 34677889999887 8899999999999999999998621 110000
Q ss_pred ---CC--C------------eEEEE------------------e-e---CCE-EEEEeCCCcEEEEEccCCccccccccc
Q 000694 1191 ---SK--G------------IKSMS------------------V-V---QGK-IYIGCMDSSIQELAVSNNVEREIKAPF 1230 (1349)
Q Consensus 1191 ---~~--~------------V~~La------------------~-~---dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~l 1230 (1349)
+. . +.|.. + + .=. .++|+-||+|.+||+...+.+.+
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---- 323 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---- 323 (399)
T ss_pred eEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee----
Confidence 00 0 11111 1 0 001 33588899999999988764433
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1231 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
..|..+|..+.|-+ ..+++++. .+|.|+.||.++|+++.++.||...|.+++++|++++++|+|.|++.+||+..
T Consensus 324 ---c~he~~V~~l~w~~-t~~l~t~c-~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 324 ---CEHEDGVTKLKWLN-TDYLLTAC-ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---ccCCCceEEEEEcC-cchheeec-cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 56778899999998 33444433 38899999999999999999999999999999999999999999999999864
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=1.9e-20 Score=223.02 Aligned_cols=343 Identities=20% Similarity=0.227 Sum_probs=241.9
Q ss_pred cccccccceEEeeeccCCcceeeecccccc-chhhhccccceeecccccccccccccCCCceEEEEEeeeeeecccCCCC
Q 000694 993 ELEERLLACLCIYNYASGKGMQKLIRSSEG-VRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGA 1071 (1349)
Q Consensus 993 ~leekVLAsLsL~nl~k~egL~~L~~~s~~-v~~sLR~lk~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~ 1071 (1349)
.+-..++..+-.|++-.++....+...... .+.. ....++..+-+-.|-.+..+.|+.......-++.||...
T Consensus 36 ~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~------l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~A 109 (888)
T KOG0306|consen 36 AVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTC------LRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAA 109 (888)
T ss_pred EEEEeccccEeEEeeecchhhhhhhhhcccceEEE------eeccCCcceEEEEecCceEEeeccCCCceeeeecccccc
Confidence 333345566778888766444444432221 1111 111122222232343444445554444455678899999
Q ss_pred EEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1072 VTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1072 Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
|+++.|+ +.++++||.|+.|.+||+-.... ...+.||...|+..-|..+.+++++.|.|+.|++||+.+..+.. .
T Consensus 110 Vt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G--l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~-T 186 (888)
T KOG0306|consen 110 VTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG--LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE-T 186 (888)
T ss_pred eEEEEEcccCceEeecCCCccEEEEEecccee--eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeee-E
Confidence 9999996 44899999999999999987554 67899999999999999888999999999999999999988764 5
Q ss_pred EecCCCCeEEecCCCCEEEEEecCCeEEEEecCC-----------------cceeeccCC--------------------
Q 000694 1150 VIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-----------------TLKDIYRSK-------------------- 1192 (1349)
Q Consensus 1150 ~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~-----------------~~~~~~~~~-------------------- 1192 (1349)
...|.+.++.+..+++.+++++.|+.+++|++.- .......+.
T Consensus 187 hvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~ 266 (888)
T KOG0306|consen 187 HVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK 266 (888)
T ss_pred EecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchh
Confidence 5678899999988889999999999999999820 000000000
Q ss_pred -------------------------------------------------------CeEEEEe-eCC--E-EEEEeCCCcE
Q 000694 1193 -------------------------------------------------------GIKSMSV-VQG--K-IYIGCMDSSI 1213 (1349)
Q Consensus 1193 -------------------------------------------------------~V~~La~-~dg--~-LlSGs~DGsI 1213 (1349)
.+.++++ +++ . .+.--.++++
T Consensus 267 ~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv 346 (888)
T KOG0306|consen 267 VIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTV 346 (888)
T ss_pred hhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCce
Confidence 0223332 111 0 1111344555
Q ss_pred EEEEccCC-cc--ccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1214 QELAVSNN-VE--REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1214 ~IWDl~t~-~~--~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
..|.+... .. .......-...+|...|.+++++.+...+++++ ++.+++|+..+.++++++. .+.+.+..|-|
T Consensus 347 ~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga--~~SikiWn~~t~kciRTi~--~~y~l~~~Fvp 422 (888)
T KOG0306|consen 347 EWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA--GESIKIWNRDTLKCIRTIT--CGYILASKFVP 422 (888)
T ss_pred EEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC--CCcEEEEEccCcceeEEec--cccEEEEEecC
Confidence 55555431 10 000001112346778889999999988888764 6789999999999999997 34899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEE--EcCCEEEEEECCCcEEEeeC
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLL--TANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs--~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.++++++|...|.+.+||+.+...+.++..|.. |++++ +|+..+++||.|.+|++||-
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeE
Confidence 999999999999999999999999999887654 88877 57889999999999999983
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-19 Score=197.60 Aligned_cols=279 Identities=14% Similarity=0.156 Sum_probs=223.3
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEEc
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA--DKTIGVWQM 1140 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~--DGtIrVWDl 1140 (1349)
+..-.+.|+++.|+ +| .+++++.|.++++||..+++. ++++..++-.|..++|......++.++. |.+||.-++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 34457899999996 44 688999999999999999876 7788877788999999877777776666 899999999
Q ss_pred cCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecC-CcceeeccCCCeEEEEe-eCCEEEE-EeCCCcEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKGIKSMSV-VQGKIYI-GCMDSSIQE 1215 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~V~~La~-~dg~LlS-Gs~DGsI~I 1215 (1349)
.+.+.++ .+.+|...|.++. |-++.+++++.|++|++||++ ...+......+--..++ |.|.+++ |...+.|++
T Consensus 88 ~dNkylR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 88 HDNKYLR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred ecCceEE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Confidence 9988874 6779999999865 888999999999999999998 33333444444445667 8887776 555559999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe---EEEEEecCC
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI---QAMAVVEDF 1292 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~V---tsLafSPDg 1292 (1349)
||++.......... ..-.......+.+.|+|++.+++.+. .++.+++.|.-+|....++.++...- -+..|+||+
T Consensus 167 yD~Rs~dkgPF~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTF-SITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEecccCCCCceeE-ccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99997643322111 11113467789999999999888765 46789999999999999888776522 567899999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1293 IYLNYNSSASSLQIWLRGTQQKVGRISA--GSKITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl~tg~~l~sl~~--hs~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+++++|+.||+|.+|++++|..+..+.+ .+.+.++.|++++..-.+.+..+-+|-|
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 9999999999999999999999999998 3458999999998887888888999954
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.86 E-value=2.2e-20 Score=204.49 Aligned_cols=237 Identities=11% Similarity=0.176 Sum_probs=186.2
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEec
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl 1181 (1349)
+..+.||.+.|..+.|+|+|.+++|||.|..|.+|++.....-.-...+|.+.|..+. .+++.+++++.|.+++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4566899999999999999999999999999999998554333345568999999855 89999999999999999999
Q ss_pred CC-cceeeccCCC--eEEEEe--eCCEEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1182 SR-TLKDIYRSKG--IKSMSV--VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1182 ~~-~~~~~~~~~~--V~~La~--~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
+. ........+. |+.+.. .+..++ +|+.||++++||+++....+. ......++++.|.....-+.++
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-------~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-------FENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc-------cccceeEEEEEecccccceeec
Confidence 84 3333333333 555554 223444 689999999999997643211 1234678899998876666655
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCC-----eEE
Q 000694 1256 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAGSK-----ITS 1326 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg----~~l~sl~~hs~-----Vts 1326 (1349)
+. |+.|++||++.+....++.||..+|+.+..+|+|.++.+-+.|.++++||++.. .++..+.++.. ...
T Consensus 193 gI-dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 193 GI-DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred cc-cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 54 668999999999999999999999999999999999999999999999998754 34666666432 344
Q ss_pred EEE--cCCEEEEEECCCcEEEeeC
Q 000694 1327 LLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1327 Ls~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.+| +++.+.+|+.|..+++||.
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred eeccCCCCccccccccceEEEeec
Confidence 455 4679999999999999985
No 62
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.6e-20 Score=202.31 Aligned_cols=261 Identities=12% Similarity=0.134 Sum_probs=204.0
Q ss_pred CCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1068 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1068 H~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
-.+.|++|.|+ .+.|+++++||++++||+..... ...++ |..++.+++|.+ ...+++|+.||.|+.+|++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 46789999996 45788888999999999998643 33444 899999999976 45689999999999999999875
Q ss_pred EEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcc--eeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCC
Q 000694 1146 ELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 1221 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~ 1221 (1349)
.....|..+|.++. ...+.+++|++|++|++||.+... ..+.....|.|+...++.|+.|+.|..|.+||+++.
T Consensus 88 --~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 88 --DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred --eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 45678999999987 458899999999999999998422 233344569999999999999999999999999987
Q ss_pred ccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEecCCCC---------CeEEEEE
Q 000694 1222 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKGT---------TIQAMAV 1288 (1349)
Q Consensus 1222 ~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~----~li~tl~gH~~---------~VtsLaf 1288 (1349)
..... +.-..-...+++++..|++.-.+.++. +|.|.+=.++.. .....|+.|.. +|++++|
T Consensus 166 ~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSi-eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 166 DEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSI-EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred cchhh----hccccceeEEEEEEEecCCCceEEEee-cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 43211 001122456889998886544444443 667766555443 33345566643 8999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEEC
Q 000694 1289 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTE 1339 (1349)
Q Consensus 1289 SPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~VtsLs~d--g~~LaSGS~ 1339 (1349)
+|-..+++|||.||.|.+||..+.+.+..+..- ..|.+++|+ |..||+|+.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999998874 558888884 889998875
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1e-19 Score=196.93 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=192.7
Q ss_pred eEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCC-eEEEE--EEecCCCCeEEe--cCCCCEEEEEecCCe
Q 000694 1102 MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQR-KLELI--EVIATKEPIRKL--DTYGKTIFASTQGHR 1175 (1349)
Q Consensus 1102 ~~i~tL~gHss~VtsLafSpd-g~~LaSGS~DGtIrVWDl~tg-~~~~~--~~~~h~~~V~sL--s~~g~~LvsgS~Dgt 1175 (1349)
..++.+++|++.|..++|+|- |..|+|||.|+.||+|+...+ ...+. .-.+|+..|.++ +|+|+++++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 457788999999999999998 889999999999999999742 23333 334688889885 589999999999999
Q ss_pred EEEEecCC---cceeeccCC--CeEEEEe-e-CCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC
Q 000694 1176 MKVIDSSR---TLKDIYRSK--GIKSMSV-V-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 1248 (1349)
Q Consensus 1176 IkVWDl~~---~~~~~~~~~--~V~~La~-~-dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd 1248 (1349)
+.||.-.. .......+| .|.|++| . ++.|++++.|++|-+|.+..+....+ ..++..|.+.|..+.+||.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec---~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC---IAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE---EeeeccccccccEEEEcCC
Confidence 99998762 223333344 3999999 4 45667799999999999986543322 3466789999999999998
Q ss_pred ceEEEEEecCCCeEEEEECC---CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-C-CC
Q 000694 1249 WLYSASSSVEGSNIKEWRRH---RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-G-SK 1323 (1349)
Q Consensus 1249 ~i~las~S~dDgtIrIWDl~---t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-h-s~ 1323 (1349)
.-.+++++. |++|++|+-. ...++.++.+|...|++++|+|.|..+++++.|++|+||... ..+.+ | ..
T Consensus 162 ~dlL~S~SY-DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSY-DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRA 235 (312)
T ss_pred cceeEEecc-CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccc
Confidence 888888775 6699999875 357899999999999999999999999999999999999865 23332 4 45
Q ss_pred eEEEEEcCCEEEEEECCCcEEEee
Q 000694 1324 ITSLLTANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1324 VtsLs~dg~~LaSGS~DGtIrIWD 1347 (1349)
++.++|....|++|+.|+.|++|-
T Consensus 236 ~Y~v~W~~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 236 LYDVPWDNGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEeeeecccceEeccCCCEEEEEE
Confidence 899999988999999999999984
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=4.1e-21 Score=220.65 Aligned_cols=283 Identities=14% Similarity=0.143 Sum_probs=217.8
Q ss_pred cceeeeccccccchhhhccccceeeccccccccc-ccccCCCceEEEEE-eeeeeecccCCCCEEEEEEc-CC-EEEEEE
Q 000694 1011 KGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAA-DYYLPNISRISCVH-TQILEASHKCSGAVTALIYY-KG-LLCSGF 1086 (1349)
Q Consensus 1011 egL~~L~~~s~~v~~sLR~lk~vsw~a~ellkv~-~~~~p~~~~w~~~~-t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS 1086 (1349)
+..+.+.+|.+++.. +.|.+...+... .........|+.++ ...+.++.||+.+|.+++|+ +| .+.|+|
T Consensus 205 k~~~~~~gH~kgvsa-------i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSA-------IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred hheeeccCCccccch-------hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee
Confidence 446788999998876 556653322221 11123446788777 56778999999999999996 45 699999
Q ss_pred CCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe--cCC
Q 000694 1087 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTY 1163 (1349)
Q Consensus 1087 ~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL--s~~ 1163 (1349)
.|+.|++||+++|++ +..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++|+.+. ....|-+.|..+ .++
T Consensus 278 fD~~lKlwDtETG~~--~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq-eYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQV--LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ-EYDRHLGAILDITFVDE 353 (503)
T ss_pred cceeeeeeccccceE--EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH-HHHhhhhheeeeEEccC
Confidence 999999999999987 55554 34578999999999 778899999999999999998642 334567777774 489
Q ss_pred CCEEEEEecCCeEEEEecCCccee----eccCCCeEEEEe-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccC-
Q 000694 1164 GKTIFASTQGHRMKVIDSSRTLKD----IYRSKGIKSMSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQ- 1236 (1349)
Q Consensus 1164 g~~LvsgS~DgtIkVWDl~~~~~~----~~~~~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h- 1236 (1349)
+..+++.+.|++++||+.+..... ....+..-|+.. |++.++ +-+.|+.|.+|.+...-. ....+.+.+|
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~ 430 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHS 430 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhccee
Confidence 999999999999999999843322 122344667776 776655 467899999998754311 0112345665
Q ss_pred -CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEE
Q 000694 1237 -SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1237 -~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg-~~LaSGS~DGtVrVWD 1308 (1349)
.+.-..+.|+||+.+++++. .+|.+.+||.++.+.+..+++|.+.+..+.|+|.. ..+||||.||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGd-sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGD-SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeec-CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 44556789999999999876 47799999999999999999999999999999954 6799999999999996
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-20 Score=200.61 Aligned_cols=255 Identities=11% Similarity=0.143 Sum_probs=199.6
Q ss_pred CCCcEEEEECC-CCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec---
Q 000694 1087 SDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--- 1161 (1349)
Q Consensus 1087 ~DGtIrVWDl~-tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--- 1161 (1349)
..|++.|-++. .+.......+. -.+.+..++|+++. +.+++++.||++++||+.........+..|...|.++.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccc
Confidence 46899999996 33333444443 56789999999876 56889999999999997554433345667899999976
Q ss_pred CCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe---eCCEEEEEeCCCcEEEEEccCCcccccccccccccc
Q 000694 1162 TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV---VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1162 ~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~---~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~ 1235 (1349)
..+..+++++.|++|++|+.++ ....++.++. |....+ ..+.+++++.||++++||++..... ..+..
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~------~~i~a 188 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF------MSIEA 188 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce------eEEEe
Confidence 4567788899999999999984 4444555554 777777 3456778999999999999875211 12456
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC-
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQ- 1312 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPD-g~~LaSGS~DGtVrVWDl~tg- 1312 (1349)
|...|.+..++.-...++..+..|+.|+.||+++ ..++..+.+|+-.|+.+.|||. ...|++++.|=+++|||...+
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 7788999999987766666666789999999977 6778899999999999999995 468999999999999998754
Q ss_pred cEEEEEeCCCC-eEEEEEc---CCEEEEEECCCcEEEeeC
Q 000694 1313 QKVGRISAGSK-ITSLLTA---NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1313 ~~l~sl~~hs~-VtsLs~d---g~~LaSGS~DGtIrIWD~ 1348 (1349)
..+.+..+|+. |..+.|+ +..+|+.+.|+.++||+|
T Consensus 269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 45566667777 7777774 789999999999999994
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.9e-20 Score=210.94 Aligned_cols=239 Identities=18% Similarity=0.228 Sum_probs=184.6
Q ss_pred eeecccCCCCEEEEEEc-C-CEEEEEECCCcEEEEECCCCceeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1062 LEASHKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafs-d-g~LaSGS~DGtIrVWDl~tg~~~~i~tL-~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
..+..||..+|..+.|+ | .+|++++.|..+++||+.+|.. .+.+ .+|...+.+++|.|||..+++|+.|+++..|
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 45678999999999996 3 3799999999999999999986 3333 3456899999999999999999999999999
Q ss_pred EccCCeEEEEEEecCC-CCeEE--ecCCCCEEEEEecCCeEEEEecCCcc--eeeccCCCeEEEEe-eCCEEE-EEeCCC
Q 000694 1139 QMVQRKLELIEVIATK-EPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSV-VQGKIY-IGCMDS 1211 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~-~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~~~V~~La~-~dg~Ll-SGs~DG 1211 (1349)
|++.... ....+.. ..|.+ +.++|..+++.+.|..|++++..... ..+...++|+++.+ .+|+++ +.-.+.
T Consensus 340 dlDgn~~--~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 340 DLDGNIL--GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred cCCcchh--hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence 9965432 1122222 23555 55899999999999999999988432 24455677999999 677766 567799
Q ss_pred cEEEEEccCCccccccccccccccCCCC---eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 000694 1212 SIQELAVSNNVEREIKAPFKSWRLQSKP---INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1212 sI~IWDl~t~~~~~i~~~lk~~~~h~~~---I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf 1288 (1349)
.+++||+...... +.+.+|... |.+.-...+..++++++ +|+.|+||+..+|+++..+.||...|++++|
T Consensus 418 ei~LWDl~e~~lv------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 418 EIHLWDLEENKLV------RKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLLAVLSGHSKTVNCVSW 490 (519)
T ss_pred eeEEeecchhhHH------HHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCceeEeecCCcceeeEEec
Confidence 9999999965422 334555332 33322233445666654 7889999999999999999999999999999
Q ss_pred ec-CCCEEEEEeCCCcEEEEECCC
Q 000694 1289 VE-DFIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1289 SP-Dg~~LaSGS~DGtVrVWDl~t 1311 (1349)
+| +..++|++|.||+|+||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 556899999999999996543
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=7.1e-20 Score=205.39 Aligned_cols=243 Identities=15% Similarity=0.208 Sum_probs=196.6
Q ss_pred eecccCCCCEEEEEE--cCC---EEEEEECCCcEEEEECCCCceeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 000694 1063 EASHKCSGAVTALIY--YKG---LLCSGFSDGSIKMWDIKKQSAML--VWDVKEHRKAVTSFSLFEPGESLLSGSADKTI 1135 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Laf--sdg---~LaSGS~DGtIrVWDl~tg~~~~--i~tL~gHss~VtsLafSpdg~~LaSGS~DGtI 1135 (1349)
....||+++|.+++| .+. .++++|.|.++++|..+.+.... ++.-.||..+|.++...++|..+++||.|.+|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 446799999999998 233 59999999999999998765322 22235999999999999999999999999999
Q ss_pred EEEEccCCe------------------------EEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecC--Ccceee
Q 000694 1136 GVWQMVQRK------------------------LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS--RTLKDI 1188 (1349)
Q Consensus 1136 rVWDl~tg~------------------------~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~--~~~~~~ 1188 (1349)
++|+..+.. .......+|.++|.++. .+...++++++|.+|+.||+. +.....
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeee
Confidence 999932110 11235567889998865 557889999999999999998 344555
Q ss_pred ccCCCeEEEEe-eCCE-EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 000694 1189 YRSKGIKSMSV-VQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 1266 (1349)
Q Consensus 1189 ~~~~~V~~La~-~dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWD 1266 (1349)
...+.+.|+.+ +... +++||.|..+++||.+++.... ....+.+|...|.++.++|...+.+..+..|+++++||
T Consensus 298 ~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~---v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 298 TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV---VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred ecCcceeEeecccccceeeecCCCCceeecCCCCCCCce---eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 66677999998 5554 5579999999999999874221 22456789999999999999877776666799999999
Q ss_pred CCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1267 RHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1267 l~t~~-li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
+++.. ++..+.+|...|.++.|+ ++..+++||.|.+|+|+..
T Consensus 375 vRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 98866 899999999999999997 5779999999999999854
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.3e-20 Score=226.93 Aligned_cols=243 Identities=18% Similarity=0.200 Sum_probs=188.4
Q ss_pred eecc-cCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCC--------------------------------Cc-------
Q 000694 1063 EASH-KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK--------------------------------QS------- 1100 (1349)
Q Consensus 1063 ~~~~-gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~t--------------------------------g~------- 1100 (1349)
+... +|.+.|+++.|+ || +||+||.||.|+||.+.. ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3345 899999999995 66 799999999999998744 00
Q ss_pred -------------------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec
Q 000694 1101 -------------------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD 1161 (1349)
Q Consensus 1101 -------------------~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs 1161 (1349)
..+++.+.||.+.|.++.|+.+ ++|+|+|.|+|||+|++...++++ ...|.+.|+|+.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee--EEecCCeeEEEE
Confidence 0123456899999999999865 489999999999999998887764 557899999966
Q ss_pred ---CCCCEEEEEecCCeEEEEecCCcceeeccC--CCeEEEEe-eCCEEE-EEeCCCcEEEEEccCCcccc---cccccc
Q 000694 1162 ---TYGKTIFASTQGHRMKVIDSSRTLKDIYRS--KGIKSMSV-VQGKIY-IGCMDSSIQELAVSNNVERE---IKAPFK 1231 (1349)
Q Consensus 1162 ---~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~--~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~---i~~~lk 1231 (1349)
.+.+++++|+-||.+++|++.......+.. .-|+++++ |+|+.+ .|+.+|.+++|++...+... |....+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 478899999999999999998654444433 23999999 888755 69999999999998764321 100000
Q ss_pred ccccCCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEE
Q 000694 1232 SWRLQSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIW 1307 (1349)
Q Consensus 1232 ~~~~h~~~I~sL~~~pd~i--~las~S~dDgtIrIWDl~t~~li~tl~gH~~--~VtsLafSPDg~~LaSGS~DGtVrVW 1307 (1349)
. +..+..|+.+++.|... .+++. .|..|+|||.++..++..|+|+.. .-....|+.||++|++|++|..|+||
T Consensus 497 K-k~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 K-KKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred c-cccCceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 0 12234899999997754 45544 488999999999889999987653 33466789999999999999999999
Q ss_pred ECCC
Q 000694 1308 LRGT 1311 (1349)
Q Consensus 1308 Dl~t 1311 (1349)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 8643
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=5.6e-20 Score=198.40 Aligned_cols=271 Identities=20% Similarity=0.194 Sum_probs=212.9
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
.+||..+++.|.|+ +++|++++.|.+..||-..+|+. +.++.||++.|+|+..+-+.++++||+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 57899999999996 44899999999999999888775 899999999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCeEE--ecCCCCEEEEEecC-----CeEEEEecCCcc---------eeec-cCCCeEEEEe--eCCE
Q 000694 1143 RKLELIEVIATKEPIRK--LDTYGKTIFASTQG-----HRMKVIDSSRTL---------KDIY-RSKGIKSMSV--VQGK 1203 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~D-----gtIkVWDl~~~~---------~~~~-~~~~V~~La~--~dg~ 1203 (1349)
|+++.... ...+|.. |+.+|+.++..+.+ +.|.++|++... ..+. ....++..-| .+..
T Consensus 84 Gk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 84 GKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 99875443 3445554 66888888777643 469999987322 1111 2234666666 4556
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 1283 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~V 1283 (1349)
+++|..||.|..||++++... ...-..|...|+.++++++..+.++++ .|.+-++||..+-.+++++. ...+|
T Consensus 162 ii~Ghe~G~is~~da~~g~~~-----v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D~~tl~v~Kty~-te~Pv 234 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKEL-----VDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVDVRTLEVLKTYT-TERPV 234 (327)
T ss_pred EEEecCCCcEEEEEcccCcee-----eechhhhccccccccccCCcceEEecc-cCccceeeeccceeeEEEee-ecccc
Confidence 778999999999999998432 123356788999999999999999876 57899999999999999887 56789
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEE--ECCCC------------cEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEEe
Q 000694 1284 QAMAVVEDFIYLNYNSSASSLQIW--LRGTQ------------QKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1284 tsLafSPDg~~LaSGS~DGtVrVW--Dl~tg------------~~l~sl~~h-s~VtsLs~--dg~~LaSGS~DGtIrIW 1346 (1349)
++.+++|...+++.||.....-|= +.+.| +.+.++++| ++|+++++ +|+..++|++||.||+.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 999999988888877654333232 22223 345666665 56999987 57899999999999984
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-19 Score=196.51 Aligned_cols=254 Identities=18% Similarity=0.226 Sum_probs=195.8
Q ss_pred ecccCCCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEcc
Q 000694 1064 ASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~--~LaSGS~DGtIrVWDl~ 1141 (1349)
.++.|.++|++++++.-++|+||.|-+|+|||+.+... +..+-.|.+.|+++.|.+... .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q--lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ--LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEecceeEeccCCCCcEEEEeccchhh--hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 47899999999999999999999999999999998654 677888999999999998775 89999999999999997
Q ss_pred CCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC-cceeecc-CCCeEEEEe-eCCEEEEEeCCCcEEEE
Q 000694 1142 QRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-SKGIKSMSV-VQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~-~~~V~~La~-~dg~LlSGs~DGsI~IW 1216 (1349)
.-.+. ..+.+|.+.|+.+ .|.+...++.+.|+.++.||+-+ ....... .+.-..+.| +.|.-++.+.-..|-+|
T Consensus 116 ~W~~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~ 194 (362)
T KOG0294|consen 116 SWELL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY 194 (362)
T ss_pred CeEEe-eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence 76544 4566788889875 59999999999999999999863 2222222 222344667 66654443344567888
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE--ecCCCE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV--VEDFIY 1294 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf--SPDg~~ 1294 (1349)
.+.+...... ......+.++.+-.....++++ +++.|.+||.+...+...+.+|..+|-++.+ .|++.+
T Consensus 195 q~d~A~v~~~-------i~~~~r~l~~~~l~~~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 195 QLDNASVFRE-------IENPKRILCATFLDGSELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY 265 (362)
T ss_pred ecccHhHhhh-------hhccccceeeeecCCceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence 8876532111 0111345566665555444433 6889999999999999999999999999984 478899
Q ss_pred EEEEeCCCcEEEEECCCC-----cEEEEEeCCCCeEEEEE
Q 000694 1295 LNYNSSASSLQIWLRGTQ-----QKVGRISAGSKITSLLT 1329 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg-----~~l~sl~~hs~VtsLs~ 1329 (1349)
|+|+|.||.|+|||++.. +.+..+..+.+++|+..
T Consensus 266 lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred EEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 999999999999998766 56677777777888763
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.3e-19 Score=212.51 Aligned_cols=264 Identities=13% Similarity=0.195 Sum_probs=211.4
Q ss_pred EEEcC-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC
Q 000694 1075 LIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1075 Lafsd-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h 1153 (1349)
+.|+. +.|++| ....|++|+..++....+..+. ...|+++.|+++|.+|++|..+|.|.|||..+.+........|
T Consensus 183 ldWss~n~laVa-lg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSSANVLAVA-LGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred hhcccCCeEEEE-ecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 34543 345544 4457999999998865555553 7899999999999999999999999999998877665555558
Q ss_pred CCCeEEecCCCCEEEEEecCCeEEEEecCCcc--eeeccCC--CeEEEEe-eCC-EEEEEeCCCcEEEEEccCCcccccc
Q 000694 1154 KEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRSK--GIKSMSV-VQG-KIYIGCMDSSIQELAVSNNVEREIK 1227 (1349)
Q Consensus 1154 ~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~~--~V~~La~-~dg-~LlSGs~DGsI~IWDl~t~~~~~i~ 1227 (1349)
...|.++++++..+.+|+.++.|..+|++... .....+| .|..+.+ +++ .+++|+.|+.+.+||.....
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~----- 334 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE----- 334 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----
Confidence 99999999999999999999999999998322 1223333 4999999 555 56679999999999995442
Q ss_pred ccccccccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE--eCCCc
Q 000694 1228 APFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN--SSASS 1303 (1349)
Q Consensus 1228 ~~lk~~~~h~~~I~sL~~~pd--~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG--S~DGt 1303 (1349)
+...+..|...|..++|+|- ++...+++..|+.|++||..++..+.... .+..|.++.|++..+-|+++ ..++.
T Consensus 335 -p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 335 -PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred -ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 23455788899999999986 44444555678999999999998888776 46679999999988766654 36788
Q ss_pred EEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1304 LQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1304 VrVWDl~tg~~l~sl~~hs~-VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
|.||+..+.+.+..+.+|.. |..+++ ||..+++|+.|.++++|++
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 99999999999999998765 877776 5789999999999999986
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-19 Score=215.47 Aligned_cols=267 Identities=15% Similarity=0.199 Sum_probs=209.1
Q ss_pred eeecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEecc-
Q 000694 1033 VTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE- 1109 (1349)
Q Consensus 1033 vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~g- 1109 (1349)
+.|....++.++. ....-.|+-....+.+....+.+.|+++.|+ +++|++|..+|.|.|||....+. +.++.+
T Consensus 183 ldWss~n~laVal--g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~~~~~~ 258 (484)
T KOG0305|consen 183 LDWSSANVLAVAL--GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TRTLRGS 258 (484)
T ss_pred hhcccCCeEEEEe--cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cccccCC
Confidence 6677665554432 1122345544445455555568999999995 44899999999999999988654 677888
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cce
Q 000694 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLK 1186 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~ 1186 (1349)
|...|-+++|. +..+.+|+.||.|..+|++..+.......+|...|.. +++++..+++|+.|+.+.|||... ...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999997 6679999999999999999876554446678888877 568999999999999999999953 333
Q ss_pred eeccCC--CeEEEEe---eCCEEEE--EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCce-EEEEEecC
Q 000694 1187 DIYRSK--GIKSMSV---VQGKIYI--GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVE 1258 (1349)
Q Consensus 1187 ~~~~~~--~V~~La~---~dg~LlS--Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i-~las~S~d 1258 (1349)
..+..| .|..++| ..|.|++ |+.|+.|++||..++..... ...+..|.++.|++... ++.+.+..
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCC
Confidence 333333 3999998 4677777 45699999999998853211 23467899999999873 34444445
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1259 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1259 DgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 668999999999999999999999999999999999999999999999987664
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=208.73 Aligned_cols=265 Identities=14% Similarity=0.206 Sum_probs=208.8
Q ss_pred CCCCEEEEEEcC----CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1068 CSGAVTALIYYK----GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1068 H~~~Vt~Lafsd----g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
-.+.|++++|++ +..+|+|. .+.||+..+... .+++......|.++.|..||+.++.|...|.|+|+|..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~--~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSV--RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc--EEEEEecchhhh--hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 346899999964 34445443 578899887543 5556667789999999999999999999999999996553
Q ss_pred eEEEEEEecCCCCeEE--ecC-CCCEEEEEecCCeEEEEecCCccee-eccCC--CeEEEEe-e-CC-EEEEEeCCCcEE
Q 000694 1144 KLELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSRTLKD-IYRSK--GIKSMSV-V-QG-KIYIGCMDSSIQ 1214 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~s--Ls~-~g~~LvsgS~DgtIkVWDl~~~~~~-~~~~~--~V~~La~-~-dg-~LlSGs~DGsI~ 1214 (1349)
.. ......|..++.. |.+ ++..+++|+.|+.+++||+.+.... ...++ .|.|.++ | ++ .+++|+.||.|+
T Consensus 101 ~i-LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 101 VI-LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HH-HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 22 2345578888776 454 4556778888889999999965432 33333 3999998 3 33 466899999999
Q ss_pred EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCC
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFI 1293 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~ 1293 (1349)
+||++..... + .--.|+.+|.++.+-|++..+++.+ ++.|++||+-+ ++.+..+..|...|+|+.+..++.
T Consensus 180 l~DtR~~~~~-v-----~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 180 LWDTRSLTSR-V-----VELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred EEEeccCCce-e-----EEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 9999887421 1 1135789999999999988787764 77899999974 566666666999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEE
Q 000694 1294 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1294 ~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS~DGtIrI 1345 (1349)
.|++||-||.|+|||+.+.+.++.+.-.++|.+++. +++.++.|..||.+-+
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999999988875 4679999999998754
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=207.34 Aligned_cols=278 Identities=17% Similarity=0.205 Sum_probs=205.8
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCcee--EEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM--LVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~--~i~tL-~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
+.+|+..|.++++. .| ++++||.|.+|++||+...... ..+.+ ......|+++.|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 57899999999994 45 8999999999999999764321 11222 23345799999999999998888888999999
Q ss_pred ccCCeEEE-----------EEEecCCCCeEE--ecC-CCCEEEEEecCCeEEEEecCCcc--eeeccC-----C--CeEE
Q 000694 1140 MVQRKLEL-----------IEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSRTL--KDIYRS-----K--GIKS 1196 (1349)
Q Consensus 1140 l~tg~~~~-----------~~~~~h~~~V~s--Ls~-~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~-----~--~V~~ 1196 (1349)
-....... ....+|...+++ |.| +.+.+++++.||++++||++... ..++.. . .++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 75433221 122345555665 444 45678999999999999998421 122211 1 2777
Q ss_pred EEe-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccC--CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CC
Q 000694 1197 MSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQ--SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KP 1271 (1349)
Q Consensus 1197 La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h--~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~ 1271 (1349)
.+| ++|.++ +||.||+|.+||........ ...+-+.| +..|+++.|++++.++++-+. |+++++||++. .+
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p---~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP---VMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVWDLRQFKK 398 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCccccc---ceEeeeccCCCCceeEEEeccccchhhhccC-CCceeeeecccccc
Confidence 778 777765 59999999999986543221 11222445 458999999999999998764 66999999976 56
Q ss_pred eEEEecCCC--CCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEEECC
Q 000694 1272 QISIAPEKG--TTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCGTET 1340 (1349)
Q Consensus 1272 li~tl~gH~--~~VtsLafSPDg~~LaSGS~------DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~dg~--~LaSGS~D 1340 (1349)
++....+-. -+-+.++|||+.++|++|.. .|++.+||..+.+.+.++.-.. .|..+.|+++ .|+.|+.|
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 666555432 35678899999999999863 4789999999999999998644 4888899976 78899999
Q ss_pred CcEEEe
Q 000694 1341 GLIKGW 1346 (1349)
Q Consensus 1341 GtIrIW 1346 (1349)
|++++|
T Consensus 479 G~~~vy 484 (641)
T KOG0772|consen 479 GTAHVY 484 (641)
T ss_pred CceEEE
Confidence 999985
No 75
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.5e-18 Score=213.87 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=165.0
Q ss_pred EEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecC
Q 000694 1084 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT 1162 (1349)
Q Consensus 1084 SGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpd-g~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~ 1162 (1349)
.|+.+|.|++|+..... .+..+.+|.++|.+++|+|+ +.+|+||+.||+|++||+.++...... ...++..+.
T Consensus 49 gGG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---i~~p~~~L~- 122 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---IKDPQCILK- 122 (568)
T ss_pred CCCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---cccceEEee-
Confidence 47788999999987754 47889999999999999997 789999999999999999764321000 000000000
Q ss_pred CCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-eCCE--EEEEeCCCcEEEEEccCCccccccccccccccCCCC
Q 000694 1163 YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 1239 (1349)
Q Consensus 1163 ~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~dg~--LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~ 1239 (1349)
.+...|.++.| |++. +++|+.|++|++||++++.... .+. +...
T Consensus 123 --------------------------gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~------~i~-~~~~ 169 (568)
T PTZ00420 123 --------------------------GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF------QIN-MPKK 169 (568)
T ss_pred --------------------------cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE------EEe-cCCc
Confidence 01234777777 5543 3578889999999998875321 112 3467
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE-----EEEecCCCEEEEEeCCC----cEEEEECC
Q 000694 1240 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA-----MAVVEDFIYLNYNSSAS----SLQIWLRG 1310 (1349)
Q Consensus 1240 I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vts-----LafSPDg~~LaSGS~DG----tVrVWDl~ 1310 (1349)
|.++.|++++..+++++ .|+.|++||+++++.+..+.+|.+.+.+ ..|++++.+++++|.|+ +|+|||++
T Consensus 170 V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999998887654 5789999999999999999999876543 33568999999988774 79999998
Q ss_pred C-CcEEEEEeCCCCeEEE--EE---cCCEEEEEECCCcEEEeeC
Q 000694 1311 T-QQKVGRISAGSKITSL--LT---ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1311 t-g~~l~sl~~hs~VtsL--s~---dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+ ++++..+..+.....+ .| +|.++++|+.|++|++|+.
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 5 6677766654433222 23 2779999999999999985
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=7.7e-19 Score=201.22 Aligned_cols=273 Identities=15% Similarity=0.250 Sum_probs=212.0
Q ss_pred ecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCcee--EEEE-------------e-ccCCCcEEEEEEcCCCCE
Q 000694 1064 ASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAM--LVWD-------------V-KEHRKAVTSFSLFEPGES 1125 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~--~i~t-------------L-~gHss~VtsLafSpdg~~ 1125 (1349)
....|.-+|+|+++++ .++++++.||+|.=|++.+++.. .+.+ - ++|.+.|.+++.++||++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 3467899999999963 38999999999999999877621 0000 1 378899999999999999
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCC-cceeeccCC--CeEEEEe-
Q 000694 1126 LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSK--GIKSMSV- 1199 (1349)
Q Consensus 1126 LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~--~V~~La~- 1199 (1349)
|++|+.|..|.||+.++.+.+. .+.+|.+.|.++. ...+.+++++.|+++++|+++. .....+.+| .|..+..
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEecCCCceEEEecCcccchhh-cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 9999999999999999987653 4678999998854 6677899999999999999984 333333333 3888887
Q ss_pred eCCEEEE-EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-
Q 000694 1200 VQGKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP- 1277 (1349)
Q Consensus 1200 ~dg~LlS-Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~- 1277 (1349)
...++++ |+.|+++++|++..... -.+.++...+.++++-.+..++.+ +++|.|.+|++.+.+++.+..
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~eesq-------lifrg~~~sidcv~~In~~HfvsG--SdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEESQ-------LIFRGGEGSIDCVAFINDEHFVSG--SDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred cccceEEeccccceeEEEeccccce-------eeeeCCCCCeeeEEEecccceeec--cCCceEEEeeecccCceeEeec
Confidence 7777886 66999999999954422 245677788999998887765543 368999999998887776554
Q ss_pred CCC-----------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCeEEEEE--cCCEEEEE-EC
Q 000694 1278 EKG-----------TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAGSKITSLLT--ANDIVLCG-TE 1339 (1349)
Q Consensus 1278 gH~-----------~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg----~~l~sl~~hs~VtsLs~--dg~~LaSG-S~ 1339 (1349)
.|+ .+|++++..|...++++|+.+|.|++|-+..+ +++..++-.+-|++++| +|+.+++| +.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 221 28999999999999999999999999987776 56677776777999997 47755555 34
Q ss_pred CCcEEEe
Q 000694 1340 TGLIKGW 1346 (1349)
Q Consensus 1340 DGtIrIW 1346 (1349)
...+--|
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 4434334
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1e-19 Score=195.26 Aligned_cols=234 Identities=13% Similarity=0.165 Sum_probs=189.6
Q ss_pred CCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCe
Q 000694 1069 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1069 ~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
.+.+..++|+ ++.+++++.||++++||.... ..+++.++.|...|.++.|++.. +.++++|.|++|++|+...++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 6788999996 457999999999999996543 35789999999999999999755 557788999999999998877
Q ss_pred EEEEEEecCCCCeEE--ec-CCCCEEEEEecCCeEEEEecCC--cceeecc-CCCeEEEEe---eCCEEEEEeCCCcEEE
Q 000694 1145 LELIEVIATKEPIRK--LD-TYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSV---VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~s--Ls-~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~-~~~V~~La~---~dg~LlSGs~DGsI~I 1215 (1349)
-++ .+.+|...|.. ++ ..++.+++++.|+++++||++. ....+.. ...+.|..+ .+..+++|+.|+.|+.
T Consensus 139 Sv~-Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQ-TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceE-eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 665 45678888887 44 4578899999999999999983 3233222 234888887 4556778999999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEec-CCC
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE-DFI 1293 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSP-Dg~ 1293 (1349)
||++..+ .|+..+.+|+-.|+.+.++|...-+++..+-|-++++||... ...+.+...|+.-|.++.|++ ++.
T Consensus 218 wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 218 WDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG 292 (311)
T ss_pred Eehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence 9998874 344566889999999999998655554445588999999864 556777888999999999997 778
Q ss_pred EEEEEeCCCcEEEEEC
Q 000694 1294 YLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1294 ~LaSGS~DGtVrVWDl 1309 (1349)
++|+++.|+.++||+.
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999984
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=3.4e-19 Score=194.98 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=211.9
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCC------------C----ceeEEEEeccCCCcEEEEEEcCCCCEE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK------------Q----SAMLVWDVKEHRKAVTSFSLFEPGESL 1126 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~t------------g----~~~~i~tL~gHss~VtsLafSpdg~~L 1126 (1349)
...|.+++.+-+|+ || ++||||.|.+|+|.|++. + ....++++-.|...|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 35799999999995 66 699999999999999861 1 113578889999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCeEEE-EEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcc------eeeccCCCeEEE
Q 000694 1127 LSGSADKTIGVWQMVQRKLEL-IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL------KDIYRSKGIKSM 1197 (1349)
Q Consensus 1127 aSGS~DGtIrVWDl~tg~~~~-~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~------~~~~~~~~V~~L 1197 (1349)
++|+.|++|+++|+....... ........+|.+ +.|.|.++++|+.-.++++||++... ..-.+...|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999996533211 112234456776 45899999999999999999998421 111222349999
Q ss_pred Ee-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 000694 1198 SV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 1274 (1349)
Q Consensus 1198 a~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~ 1274 (1349)
.+ +.+.++ +|+.||.|++||=-+++.... .-+.| +..|.+..|..++.|+++.+ .|..+++|.+.+++++.
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t-----~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRT-----IGNAHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEISTGRMLK 341 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHH-----HHhhcCCceeeeEEEccCCeEEeecC-CcceeeeeeecCCceEE
Confidence 99 777766 699999999999776643321 11233 67899999999999999865 57899999999999999
Q ss_pred EecCCCC-----CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEe--CCCCeEEEEEc--CCEEEEEECCCcEE
Q 000694 1275 IAPEKGT-----TIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRIS--AGSKITSLLTA--NDIVLCGTETGLIK 1344 (1349)
Q Consensus 1275 tl~gH~~-----~VtsLafSPDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~--~hs~VtsLs~d--g~~LaSGS~DGtIr 1344 (1349)
.+.|-+. --+...|+....|++.-. ..+.+.-||.+++..+..+. +.+.+..+.-+ +..+++|+.|..+|
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 9886532 223445777777877654 35779999999988776555 45558888754 56899999999999
Q ss_pred Eee
Q 000694 1345 GWI 1347 (1349)
Q Consensus 1345 IWD 1347 (1349)
+|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 993
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=197.98 Aligned_cols=269 Identities=14% Similarity=0.221 Sum_probs=220.3
Q ss_pred CCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
...|+++.... ..+.|||.|.++.++|..+++. +.+++||...|+.+.|+|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~--l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI--LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh--hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-
Confidence 45677887743 5899999999999999999776 789999999999999999999999999999999999876553
Q ss_pred EEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCcceeecc-C----CCeEEEEe-eCCEEE-EEeCCCcEEEEE
Q 000694 1147 LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIYR-S----KGIKSMSV-VQGKIY-IGCMDSSIQELA 1217 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~-~----~~V~~La~-~dg~Ll-SGs~DGsI~IWD 1217 (1349)
......|..+|+.+ .+.|.++++++.|++..+.|.+........ . -.+++..| |||.++ +|..||.|++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 34566889999885 489999999999999999999843222221 1 23888888 999887 588999999999
Q ss_pred ccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCeEEEEEecCCCEEE
Q 000694 1218 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFIYLN 1296 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH-~~~VtsLafSPDg~~La 1296 (1349)
+..+.. ...|.+|..+|..++|+.++.|+++.. +|+.|++||++.-+...++.-. ...+.++.|.+.|.+++
T Consensus 376 lks~~~------~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 376 LKSQTN------VAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred cCCccc------cccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 988752 245688999999999999999999876 6778999999887766666533 33799999999999999
Q ss_pred EEeCCCcEEEEE--CCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1297 YNSSASSLQIWL--RGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1297 SGS~DGtVrVWD--l~tg~~l~sl~~hs-~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
.+|.|=.|++++ ..++..+..+..|+ ..+++.|. .+++++||.|..++++.
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 998887777765 33566777777776 47888885 66999999999998875
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=3.1e-18 Score=206.68 Aligned_cols=345 Identities=19% Similarity=0.229 Sum_probs=233.2
Q ss_pred hcCCCcccccccc----ceEEeeeccCCcceeeeccccccchhhhccccceeecccccccccccccCCCceEEEEEeeee
Q 000694 987 FLHPGLELEERLL----ACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQIL 1062 (1349)
Q Consensus 987 ~L~~~k~leekVL----AsLsL~nl~k~egL~~L~~~s~~v~~sLR~lk~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl 1062 (1349)
.+||.-.++.-++ ..+.+||+..++.+.++.++...+.. +....-+...+-+.. .+..-..+....+++
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~-ieqsPaLDVVaiG~~------~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA-IEQSPALDVVAIGLE------NGTVIIFNLKFDKIL 237 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE-eccCCcceEEEEecc------CceEEEEEcccCcEE
Confidence 3444444444333 34689999999999999998855443 323332333322211 111111123333444
Q ss_pred eecccCCCCEEEEEEc-CC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1063 EASHKCSGAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
..+..-.+.|++++|. || .+++|+..|.+.+||++..+. .......|.+.|+...|.|....++|++.|+.+++|-
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-eeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 4554346999999995 66 599999999999999998764 2223457888888888888888888888888888775
Q ss_pred ccCCeE-----------------E--------------------------------------------------------
Q 000694 1140 MVQRKL-----------------E-------------------------------------------------------- 1146 (1349)
Q Consensus 1140 l~tg~~-----------------~-------------------------------------------------------- 1146 (1349)
.+++.- +
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 442110 0
Q ss_pred ---------------------------E-----------EEEecCC------CCeEE--ecCCCCEEEEEecCCeEEEEe
Q 000694 1147 ---------------------------L-----------IEVIATK------EPIRK--LDTYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1147 ---------------------------~-----------~~~~~h~------~~V~s--Ls~~g~~LvsgS~DgtIkVWD 1180 (1349)
. .....+. ..+++ +++.|+..+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 0 0000011 12222 335667777777778888888
Q ss_pred cCCccee-ec-----cCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEE
Q 000694 1181 SSRTLKD-IY-----RSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS 1252 (1349)
Q Consensus 1181 l~~~~~~-~~-----~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~l 1252 (1349)
+...... .+ +...|+.++. .+..+++++.+|.+.+||....... ..++. +.++..+..|.....+
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~------~~l~l-~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK------KSLRL-GSSITGIVYHRVSDLL 549 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee------eeecc-CCCcceeeeeehhhhh
Confidence 7733222 12 2233888887 3445778889999999998776421 12222 3455666666554333
Q ss_pred EEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--c
Q 000694 1253 ASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--A 1330 (1349)
Q Consensus 1253 as~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--d 1330 (1349)
+.. .+|-.|+++|..+.+.++.|.||+..|++++|||||++|++++.|++|++||+.++..+-.+.-..+.+++++ +
T Consensus 550 a~~-~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 550 AIA-LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred hhh-cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 332 3577899999999999999999999999999999999999999999999999999999999988888877776 5
Q ss_pred CCEEEEEECC-CcEEEee
Q 000694 1331 NDIVLCGTET-GLIKGWI 1347 (1349)
Q Consensus 1331 g~~LaSGS~D-GtIrIWD 1347 (1349)
|++||+...| .-|++|.
T Consensus 629 gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCEEEEEEecCceEEEEE
Confidence 8899999998 4599995
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=1.4e-18 Score=215.85 Aligned_cols=279 Identities=15% Similarity=0.155 Sum_probs=216.3
Q ss_pred CCCCEEEEEEc-CC-EEEEEE--CCCcEEEEECCCC----------ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 000694 1068 CSGAVTALIYY-KG-LLCSGF--SDGSIKMWDIKKQ----------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK 1133 (1349)
Q Consensus 1068 H~~~Vt~Lafs-dg-~LaSGS--~DGtIrVWDl~tg----------~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DG 1133 (1349)
+...|.+|..+ +| .++||| .||.++||+...- -...+.+...|.+.|+|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 34568899995 55 599999 9999999987420 1234566788999999999999999999999999
Q ss_pred eEEEEEccC-------Ce----------EEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccCCC
Q 000694 1134 TIGVWQMVQ-------RK----------LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG 1193 (1349)
Q Consensus 1134 tIrVWDl~t-------g~----------~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~ 1193 (1349)
.|.||.... |. .....+.+|...|.. +++++..+++++.|++|.+||... .......+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999762 00 023455678888887 558899999999999999999874 3333333333
Q ss_pred --eEEEEe-eCCEEE-EEeCCCcEEEEEccCCc-cccccccccccccCCCCeEEEEEcCCceEEEEEec---CCCeEEEE
Q 000694 1194 --IKSMSV-VQGKIY-IGCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV---EGSNIKEW 1265 (1349)
Q Consensus 1194 --V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~-~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~---dDgtIrIW 1265 (1349)
|..+.| |-|+++ +-+.|++|++|++.+-. .+.+..+... .+....+..+.|+|++.++++... ...++.|.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh-CCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999 666555 68899999999976642 2233222211 223566788999999999976432 23478999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEec-----CCC------------EEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEE
Q 000694 1266 RRHRKPQISIAPEKGTTIQAMAVVE-----DFI------------YLNYNSSASSLQIWLRGTQQKVGRISA--GSKITS 1326 (1349)
Q Consensus 1266 Dl~t~~li~tl~gH~~~VtsLafSP-----Dg~------------~LaSGS~DGtVrVWDl~tg~~l~sl~~--hs~Vts 1326 (1349)
+-.+.+.-..+-||..++.++.|+| ... .+|+||.|++|-||.....+++..+.. ...|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 9988888889999999999999998 111 678999999999999999999888875 556999
Q ss_pred EEEc--CCEEEEEECCCcEEEee
Q 000694 1327 LLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1327 Ls~d--g~~LaSGS~DGtIrIWD 1347 (1349)
++|+ |-.|+++|.||+|.+..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEE
Confidence 9996 77999999999998753
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6.8e-19 Score=192.65 Aligned_cols=276 Identities=11% Similarity=0.220 Sum_probs=215.3
Q ss_pred eeecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1062 LEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
+..+.||.+.|+.++...+ .+.+++.|.+.+||.++++.+ +.++.||.+.|++|.|++.+.++++++.|++-.||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 4557899999999999644 699999999999999999987 888999999999999999999999999999999997
Q ss_pred c------cC--------Ce-------------------------EEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEE
Q 000694 1140 M------VQ--------RK-------------------------LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKV 1178 (1349)
Q Consensus 1140 l------~t--------g~-------------------------~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkV 1178 (1349)
. .. ++ .....+.+|...|.+ +-..++.++++++|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 1 11 00 001234456666665 3467899999999999999
Q ss_pred EecC-CcceeeccCCC--eEEEEe-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEE
Q 000694 1179 IDSS-RTLKDIYRSKG--IKSMSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA 1253 (1349)
Q Consensus 1179 WDl~-~~~~~~~~~~~--V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~la 1253 (1349)
||++ +.......+|. .+.... |..+++ +.+.|.+.++||++.. . ..+.+|.+|...+++..|..+....
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-I----~sV~VFQGHtdtVTS~vF~~dd~vV- 372 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-I----QSVAVFQGHTDTVTSVVFNTDDRVV- 372 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-c----ceeeeecccccceeEEEEecCCcee-
Confidence 9998 45556666554 444443 666655 6888999999999843 1 2236789999999999998776533
Q ss_pred EEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----CCCC-eEE
Q 000694 1254 SSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-----AGSK-ITS 1326 (1349)
Q Consensus 1254 s~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~-----~hs~-Vts 1326 (1349)
+ +++|.+|++||+++ ..++.++. ...+++.++++..+..|+.--.+..|++||+.. ..+.++. +|.+ |+|
T Consensus 373 S-gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 373 S-GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred e-cCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeee
Confidence 3 34799999999977 45566665 467799999999888999999999999999864 4444443 4555 899
Q ss_pred EEEcCC----EEEEEECCCcEEEeeC
Q 000694 1327 LLTAND----IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1327 Ls~dg~----~LaSGS~DGtIrIWD~ 1348 (1349)
.+|... -|+++|.|..+.-|+.
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred eeccccCcccccccccccceeeeeEe
Confidence 999532 6889999999999974
No 83
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=8e-18 Score=206.07 Aligned_cols=245 Identities=11% Similarity=0.080 Sum_probs=171.8
Q ss_pred CEEEEEECCCcEEEEECCCCceeE-----------EEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCeE--
Q 000694 1080 GLLCSGFSDGSIKMWDIKKQSAML-----------VWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKL-- 1145 (1349)
Q Consensus 1080 g~LaSGS~DGtIrVWDl~tg~~~~-----------i~tL~gHss~VtsLafSp-dg~~LaSGS~DGtIrVWDl~tg~~-- 1145 (1349)
+.+++++.+.....|+...+.... ...+.||.+.|++++|+| ++.+|++|+.||+|++||+.++..
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~ 112 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ 112 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc
Confidence 446666666666666654432110 124679999999999999 888999999999999999976532
Q ss_pred ----EEEEEecCCCCeEEec--CCC-CEEEEEecCCeEEEEecCCc-ceeeccC--CCeEEEEe-eCCE-EEEEeCCCcE
Q 000694 1146 ----ELIEVIATKEPIRKLD--TYG-KTIFASTQGHRMKVIDSSRT-LKDIYRS--KGIKSMSV-VQGK-IYIGCMDSSI 1213 (1349)
Q Consensus 1146 ----~~~~~~~h~~~V~sLs--~~g-~~LvsgS~DgtIkVWDl~~~-~~~~~~~--~~V~~La~-~dg~-LlSGs~DGsI 1213 (1349)
....+.+|...|.++. +.+ +.+++++.|++|++||+... ....... ..|.++.| ++|. +++|+.||.|
T Consensus 113 ~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~I 192 (493)
T PTZ00421 113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192 (493)
T ss_pred ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEE
Confidence 1234567888888754 544 68999999999999999843 3333332 34999999 6665 6679999999
Q ss_pred EEEEccCCccccccccccccccCCCC-eEEEEEcCCceEEEEEe---cCCCeEEEEECCCC-CeEEEecCC-CCCeEEEE
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKP-INSLVVYKDWLYSASSS---VEGSNIKEWRRHRK-PQISIAPEK-GTTIQAMA 1287 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~-I~sL~~~pd~i~las~S---~dDgtIrIWDl~t~-~li~tl~gH-~~~VtsLa 1287 (1349)
++||++++... ..+..|... ...+.+.++...+++.+ ..|+.|++||+++. .++.....+ ...+....
T Consensus 193 rIwD~rsg~~v------~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~ 266 (493)
T PTZ00421 193 NIIDPRDGTIV------SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPF 266 (493)
T ss_pred EEEECCCCcEE------EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEE
Confidence 99999987532 223445433 34566676654554433 24789999999764 344444433 34566677
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC--CCCeEEEEEc
Q 000694 1288 VVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISA--GSKITSLLTA 1330 (1349)
Q Consensus 1288 fSPDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~~--hs~VtsLs~d 1330 (1349)
|++++.++++|+ .||.|++||+.+++.+..... ...+..+++.
T Consensus 267 ~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~ 312 (493)
T PTZ00421 267 FDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMM 312 (493)
T ss_pred EcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEec
Confidence 899999999887 599999999999988776654 2235555554
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.4e-19 Score=214.43 Aligned_cols=237 Identities=15% Similarity=0.201 Sum_probs=183.6
Q ss_pred EEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-------------------------------E-----
Q 000694 1104 VWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-------------------------------E----- 1146 (1349)
Q Consensus 1104 i~tL~-gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~-------------------------------~----- 1146 (1349)
.+.+. +|.+.|+++.|++||+|||+||.||.|+||.+...+. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34556 8999999999999999999999999999998765000 0
Q ss_pred -----------------------EEEEecCCCCeEEecC-CCCEEEEEecCCeEEEEecCC--cceeeccCCCeEEEEe-
Q 000694 1147 -----------------------LIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSV- 1199 (1349)
Q Consensus 1147 -----------------------~~~~~~h~~~V~sLs~-~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~V~~La~- 1199 (1349)
...+.+|.+.|..+++ .+++|++++.|.+|++|++.. ++..+.+...|+|++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 0012245556666663 467899999999999999984 4445555566999999
Q ss_pred --eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 000694 1200 --VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 1277 (1349)
Q Consensus 1200 --~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~ 1277 (1349)
.|.++++||-||.|++|++...+.. .|..-..-|+++++.|+|.+++.++. +|.+++|+....+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv-------~W~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVV-------DWNDLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeE-------eehhhhhhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeee
Confidence 5678999999999999999887532 45555588999999999998887765 6799999998776654432
Q ss_pred C--C------CCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC----CCe-EEEEEcCCEEEEEECCCcE
Q 000694 1278 E--K------GTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISAG----SKI-TSLLTANDIVLCGTETGLI 1343 (1349)
Q Consensus 1278 g--H------~~~VtsLafSPDg-~~LaSGS~DGtVrVWDl~tg~~l~sl~~h----s~V-tsLs~dg~~LaSGS~DGtI 1343 (1349)
- | ...|+++.|.|.. ..++..+.|..|||+|.++...+..++|. +.+ -++..||++|++|++|..|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 1 2279999999743 35666778999999999998999888862 223 3344589999999999999
Q ss_pred EEeeC
Q 000694 1344 KGWIP 1348 (1349)
Q Consensus 1344 rIWD~ 1348 (1349)
+||+.
T Consensus 571 YiW~~ 575 (712)
T KOG0283|consen 571 YIWKN 575 (712)
T ss_pred EEEeC
Confidence 99984
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.6e-19 Score=212.88 Aligned_cols=260 Identities=16% Similarity=0.213 Sum_probs=207.3
Q ss_pred EEEEEECCCcEEEEECCCCcee----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-EEEEecCCC
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-LIEVIATKE 1155 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~----~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~-~~~~~~h~~ 1155 (1349)
+|+|||.||.|++|++...... .+.+++.|.+.|+.++...+|+.|+|+|.|-+|++|+...+... ......|.+
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D 118 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD 118 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc
Confidence 6999999999999998653221 35678899999999999999999999999999999999876422 234567999
Q ss_pred CeEEec---CCCCEEEEEecCCeEEEEecCCcce---------e---ec--cCCCeEEEEe-eCCE-EEEEeCCCcEEEE
Q 000694 1156 PIRKLD---TYGKTIFASTQGHRMKVIDSSRTLK---------D---IY--RSKGIKSMSV-VQGK-IYIGCMDSSIQEL 1216 (1349)
Q Consensus 1156 ~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~~---------~---~~--~~~~V~~La~-~dg~-LlSGs~DGsI~IW 1216 (1349)
.|.+++ .+...+++|+.|+.|.+||++.... . .. ...+|.+++. +.|. +++|+..+.+++|
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 999976 5788899999999999999983211 0 01 1123888888 5555 4468899999999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 1296 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~La 1296 (1349)
|.++.+.. ..+.+|...|..+..++++..+++++ .||+|++||+...+++.++..|...|+++..+|+-..++
T Consensus 199 Dprt~~ki------mkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 199 DPRTCKKI------MKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccccccce------eeeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 99998532 23468999999999999999888876 478999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCc-EEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1297 YNSSASSLQIWLRGTQQ-KVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1297 SGS~DGtVrVWDl~tg~-~l~sl~~hs~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
+|+.||.|..=|+.+.. ...-+....+|..+..+ .+-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 99999999999998853 33333444456555543 34457788888888884
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=3.5e-17 Score=184.93 Aligned_cols=258 Identities=13% Similarity=0.031 Sum_probs=183.7
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIRK 1159 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~L-aSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s 1159 (1349)
.+++++.||.|++||..+++. +..+.+|. .+.+++|+|+++.+ ++++.|+.|++||..+++.......+.......
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEV--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred EEEEecCCCEEEEEECCCCce--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 578999999999999998765 66676554 46789999999976 567789999999999887654332222223334
Q ss_pred ecCCCCEEEEE-ecCCeEEEEecCCc-ceeec-cCCCeEEEEe-eCCEEE-EEeCCC-cEEEEEccCCcccccccccccc
Q 000694 1160 LDTYGKTIFAS-TQGHRMKVIDSSRT-LKDIY-RSKGIKSMSV-VQGKIY-IGCMDS-SIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1160 Ls~~g~~Lvsg-S~DgtIkVWDl~~~-~~~~~-~~~~V~~La~-~dg~Ll-SGs~DG-sI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
+.++++.++++ +.++.+++||+... ..... ....+.++.+ ++|.++ ++..++ .+..||..++..... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~------~ 153 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN------V 153 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE------E
Confidence 67888877655 46889999999742 22222 2334677888 777655 455554 567789877643211 0
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-------CCeEEEEEecCCCEEEE-EeCCCcEE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-------TTIQAMAVVEDFIYLNY-NSSASSLQ 1305 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~-------~~VtsLafSPDg~~LaS-GS~DGtVr 1305 (1349)
........+.+++++..++..+..++.|++||+.+++.+..+..+. .....++|+|++++++. .+.++.|.
T Consensus 154 -~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 -LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred -EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 1123456788999988776555457899999999988776654321 12356889999998554 45677899
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEE-ECCCcEEEeeC
Q 000694 1306 IWLRGTQQKVGRISAGSKITSLLT--ANDIVLCG-TETGLIKGWIP 1348 (1349)
Q Consensus 1306 VWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSG-S~DGtIrIWD~ 1348 (1349)
+||..+++.+..+..+..+.+++| +|+.|+++ +.+|.|++||.
T Consensus 233 v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 999999988877766667888887 47788876 46999999996
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=203.04 Aligned_cols=238 Identities=12% Similarity=0.180 Sum_probs=191.2
Q ss_pred eecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
.+..|-.+.|+++.|. ++ ++++++.|+.+++|++...+. .+++.||++.|+++.|......+++|+.|.+|+.||+
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 4567788999999994 55 699999999999999999765 8899999999999999887777999999999999999
Q ss_pred cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc--ceeeccCCCeEEEEe-eC-CEEEEEeCCCcEEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSV-VQ-GKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~--~~~~~~~~~V~~La~-~d-g~LlSGs~DGsI~IW 1216 (1349)
..+.+....+.. ..+..+......+++|-.|++|++||.+.. ......+..|+++.. .+ ..+++.+.|.++.++
T Consensus 291 ~k~~C~kt~l~~--S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 291 QKAYCSKTVLPG--SQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred hhhheecccccc--ccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeee
Confidence 887765443332 334444445778888999999999998743 233333445999988 44 467788999999999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC--eEEEEEecCCCE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT--IQAMAVVEDFIY 1294 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~--VtsLafSPDg~~ 1294 (1349)
|+++.............. +...+.+.|+|++.|+++++. ||.|+||++.++++...+...+.. |++++|+|.|..
T Consensus 369 DlRt~eI~~~~sA~g~k~--asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKC--ASDWTRVVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred ecccccEEEEeecccccc--ccccceeEECCCCceeeeccC-CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 999986544322222222 234788999999999998874 779999999999999988876655 999999999999
Q ss_pred EEEEeCCCcEEEE
Q 000694 1295 LNYNSSASSLQIW 1307 (1349)
Q Consensus 1295 LaSGS~DGtVrVW 1307 (1349)
+++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999999
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.2e-18 Score=198.86 Aligned_cols=235 Identities=16% Similarity=0.210 Sum_probs=193.0
Q ss_pred cccCCCCEEEEEE-cCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcc
Q 000694 1065 SHKCSGAVTALIY-YKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1065 ~~gH~~~Vt~Laf-sdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~ 1141 (1349)
+..-.+.|.++.| +|| ++++|+..|.|+|+|..+... ++.+.+|+.+|..+.|+|.+. .+++|++|+.+++||+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i--LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI--LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH--HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3445688999999 577 588999999999999766433 678899999999999999775 57799999999999998
Q ss_pred CCeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCC---cceeeccCCCeEEEEe-eCCEEEEEeCCCcEE
Q 000694 1142 QRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQ 1214 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~---~~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~ 1214 (1349)
+... .....+|.+.|.+.+ .++..+++|+.||.|++||.+. ....+.++..|..+.+ |.|.+++.+....|+
T Consensus 142 ~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 142 TAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred CcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence 8875 567789999999854 4556899999999999999984 3445566777999988 887777767788999
Q ss_pred EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
+||+.+|..... ....|...|+|+.+..++..+++++- |+.|++||+.+.+.+..+. -.++|.+++.+||+..
T Consensus 221 VWDl~~G~qll~-----~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 221 VWDLTTGGQLLT-----SMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQT 293 (487)
T ss_pred EEEecCCceehh-----hhhcccceEEEEEeecCCceEeeccc-ccceEEEEccceEEEEeee-cccceeeEEecCCCce
Confidence 999997742211 22338899999999998887777664 7799999998888888887 5678999999999999
Q ss_pred EEEEeCCCcEEEEEC
Q 000694 1295 LNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl 1309 (1349)
++.|..||.+.+=+.
T Consensus 294 ~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEecccceeeeehh
Confidence 999999999877643
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.1e-18 Score=202.26 Aligned_cols=280 Identities=16% Similarity=0.163 Sum_probs=212.8
Q ss_pred ccCCCCEEEEEE-------------cCCEEEEEECCCcEEEEECCCCceeEE-----------E----------------
Q 000694 1066 HKCSGAVTALIY-------------YKGLLCSGFSDGSIKMWDIKKQSAMLV-----------W---------------- 1105 (1349)
Q Consensus 1066 ~gH~~~Vt~Laf-------------sdg~LaSGS~DGtIrVWDl~tg~~~~i-----------~---------------- 1105 (1349)
--|...||.+.. +.+-++|++.||+|++||+..+....+ .
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 457777777764 234699999999999999975221111 0
Q ss_pred --------EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec-----CCCCEEEEEec
Q 000694 1106 --------DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-----TYGKTIFASTQ 1172 (1349)
Q Consensus 1106 --------tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-----~~g~~LvsgS~ 1172 (1349)
..-+..-.|.+++.+|+|++|++|..-|+++||++..-+.. .....|...|.++. ...+.+++++.
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccC
Confidence 00123357999999999999999999999999999876554 35568899999975 23567899999
Q ss_pred CCeEEEEecCCcc--eeeccCC--CeEEEEe-eC---CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEE
Q 000694 1173 GHRMKVIDSSRTL--KDIYRSK--GIKSMSV-VQ---GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV 1244 (1349)
Q Consensus 1173 DgtIkVWDl~~~~--~~~~~~~--~V~~La~-~d---g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~ 1244 (1349)
|.-|.|||+.+.. .....+| .|+++.| .. -++++++.|..|.+--.+......+.+. .........++.+.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r-~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR-HTQTLSKTTLYDMA 603 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc-cccccccceEEEee
Confidence 9999999998643 3333333 3999998 33 3688899999887432221111111110 11112346788999
Q ss_pred EcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 000694 1245 VYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1321 (1349)
Q Consensus 1245 ~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g---H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h 1321 (1349)
+.|.+.++++.. .|+.|+|||+.+++..+.|++ |.+....+...|.|.|+++.+.|.++.++|..+|+++.++.||
T Consensus 604 Vdp~~k~v~t~c-QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 604 VDPTSKLVVTVC-QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eCCCcceEEEEe-cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 999999988765 688999999999999999985 5567888999999999999999999999999999999999998
Q ss_pred CC-eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1322 SK-ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1322 s~-VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+. |+.+.|. -+.|++.+.||.|.||..
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEEC
Confidence 87 8999985 459999999999999963
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1e-18 Score=206.22 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=182.1
Q ss_pred CCCcEE---EEEEc-CCCCEEEEEeCCCeEEEEEccCCeEE-----EEEEecCCCCeEEe--cCCCCEEEEEecCCeEEE
Q 000694 1110 HRKAVT---SFSLF-EPGESLLSGSADKTIGVWQMVQRKLE-----LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKV 1178 (1349)
Q Consensus 1110 Hss~Vt---sLafS-pdg~~LaSGS~DGtIrVWDl~tg~~~-----~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkV 1178 (1349)
|...|. .+..+ |.+++|+|||.||.|++|++....-. ...+..|.+.|..+ ..+++.+++++.|.+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 34444 56678999999999999998653321 22345677788774 478889999999999999
Q ss_pred EecCCcc---eeeccCC--CeEEEEe--eCCE-EEEEeCCCcEEEEEccCCccccc-----cccccccccCCCCeEEEEE
Q 000694 1179 IDSSRTL---KDIYRSK--GIKSMSV--VQGK-IYIGCMDSSIQELAVSNNVEREI-----KAPFKSWRLQSKPINSLVV 1245 (1349)
Q Consensus 1179 WDl~~~~---~~~~~~~--~V~~La~--~dg~-LlSGs~DGsI~IWDl~t~~~~~i-----~~~lk~~~~h~~~I~sL~~ 1245 (1349)
|+..... ......| .|.|+++ .++. +++||-|+.|.+||+.++....+ ......-.++..+|++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 9998542 2222223 3999998 4444 55799999999999998733111 0111111267789999999
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-e
Q 000694 1246 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-I 1324 (1349)
Q Consensus 1246 ~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-V 1324 (1349)
++.+..+++++ ..+.+++||.++++.+..+.||+..|..+..++||..++++|.||+|++||+...+++.++..|.. |
T Consensus 180 N~t~t~ivsGg-tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 180 NQTGTIIVSGG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred CCcceEEEecC-cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99987777655 467899999999999999999999999999999999999999999999999999999999987655 8
Q ss_pred EEEEEcC--CEEEEEECCCcEEEe
Q 000694 1325 TSLLTAN--DIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1325 tsLs~dg--~~LaSGS~DGtIrIW 1346 (1349)
+++..++ +.+++|+.||.|..=
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEec
Confidence 8888664 489999999998753
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=4.1e-18 Score=202.56 Aligned_cols=229 Identities=18% Similarity=0.255 Sum_probs=184.9
Q ss_pred ecccCCCCEEE-EEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1064 ASHKCSGAVTA-LIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1064 ~~~gH~~~Vt~-Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
.+.+|.+.|.+ ++|. .+++++|+.|++|.+|...+..+ ..+++||.+.|.|+....++. ++|||.|.++++|-
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P--~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP--LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc--hhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence 35778888888 8884 35799999999999999998765 889999999999999888887 99999999999998
Q ss_pred ccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeeccCCC--eEEEEe-eCCEEEEEeCCCcEEE
Q 000694 1140 MVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG--IKSMSV-VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~--V~~La~-~dg~LlSGs~DGsI~I 1215 (1349)
... +. ....+|...|+++. ...+.+++|+.|.+|++|.-.. ....+.+|. |+.+++ +++.+++++.||.|+.
T Consensus 129 ~~~--l~-~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 129 IGE--LV-YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred chh--hh-cccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-hhhhhccchhheeeeEEecCCCeEeecCCceEEE
Confidence 743 32 23678999999865 4455999999999999999854 444444454 999999 8889999999999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~L 1295 (1349)
|++..... ....+|...+.++....+...+++++ +|+++++|+.. .+.+.+...+..|+++.+-++|..
T Consensus 205 w~~~ge~l-------~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI- 273 (745)
T KOG0301|consen 205 WDLDGEVL-------LEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI- 273 (745)
T ss_pred EeccCcee-------eeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-
Confidence 99955543 24478889999999444444444443 79999999986 777888767778999999988875
Q ss_pred EEEeCCCcEEEEECC
Q 000694 1296 NYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~ 1310 (1349)
++|+.||.||||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 566779999999644
No 92
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=1.6e-17 Score=203.35 Aligned_cols=222 Identities=14% Similarity=0.172 Sum_probs=164.0
Q ss_pred cccCCCCEEEEEEc--CC-EEEEEECCCcEEEEECCCCce-----eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeE
Q 000694 1065 SHKCSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTI 1135 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg-~LaSGS~DGtIrVWDl~tg~~-----~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtI 1135 (1349)
..||.+.|++++|+ ++ +|++|+.||+|++||+.++.. ..+..+.+|...|.+++|+|++ .+|++|+.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 57899999999995 33 799999999999999976431 2467889999999999999986 689999999999
Q ss_pred EEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC-cceeeccCCC---eEEEEe--eCCEEEEE
Q 000694 1136 GVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG---IKSMSV--VQGKIYIG 1207 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~---V~~La~--~dg~LlSG 1207 (1349)
++||+.+++... ....|...|.++ .+++..+++++.|+.|++||++. ........+. +..+.+ .++.++++
T Consensus 151 rIWDl~tg~~~~-~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 151 NVWDVERGKAVE-VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEECCCCeEEE-EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999987653 445688888874 58899999999999999999974 2222222221 233444 34566654
Q ss_pred e----CCCcEEEEEccCCccccccccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCC
Q 000694 1208 C----MDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGT 1281 (1349)
Q Consensus 1208 s----~DGsI~IWDl~t~~~~~i~~~lk~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g-H~~ 1281 (1349)
+ .|+.|++||+++.... ......+ ...+....+++++.+++.++..|+.|++||+.++.++..... +..
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p-----~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASP-----YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCc-----eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 3 4899999999875311 1111222 234555567788777666665688999999999887766543 445
Q ss_pred CeEEEEEecCC
Q 000694 1282 TIQAMAVVEDF 1292 (1349)
Q Consensus 1282 ~VtsLafSPDg 1292 (1349)
++.+++|.|..
T Consensus 305 ~~~g~~~~pk~ 315 (493)
T PTZ00421 305 PHKGLCMMPKW 315 (493)
T ss_pred CCcceEecccc
Confidence 67888888843
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2e-16 Score=167.00 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=199.3
Q ss_pred CCCCEEEEEEc--CCEEEEEECCCcEEEEECCC------C----c---eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 000694 1068 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------Q----S---AMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 1132 (1349)
Q Consensus 1068 H~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~t------g----~---~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D 1132 (1349)
.+..|.+++|+ ++..++|+...+++|-.... + + ....+.-+.|.+.|.|.+|+|+|+.|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 35689999995 45799999999999875421 1 0 11122346789999999999999999999999
Q ss_pred CeEEEEEccCCeEE----EEEEecCCCCeEEec-----CCCC-EEEEEe-cCCeEEEEecC-CcceeeccCCC--eEEEE
Q 000694 1133 KTIGVWQMVQRKLE----LIEVIATKEPIRKLD-----TYGK-TIFAST-QGHRMKVIDSS-RTLKDIYRSKG--IKSMS 1198 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~----~~~~~~h~~~V~sLs-----~~g~-~LvsgS-~DgtIkVWDl~-~~~~~~~~~~~--V~~La 1198 (1349)
++|++.-++...+. -..+.-|.+.|..+. ..+. .+++++ .|..|++-|.. ++......++. |..+-
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999876543321 123456788888754 2233 344433 34456666665 34444444444 54444
Q ss_pred e-eCCEEEEEeCCCcEEEEEccCCcccccccc-ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 000694 1199 V-VQGKIYIGCMDSSIQELAVSNNVEREIKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 1276 (1349)
Q Consensus 1199 ~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~-lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl 1276 (1349)
. .+-.+++|+.|.+|++||++-......... .+--......|.++++.|.+..++++. .|....+||++.++.++.+
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~-~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH-ADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc-CCCceEEEEeeCCceeeee
Confidence 3 666777899999999999987643222111 010011247799999999999888765 5778999999999999999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEe-CCCCeEEEEEcCC--EEEEEECCCcEEEee
Q 000694 1277 PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRIS-AGSKITSLLTAND--IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1277 ~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg----~~l~sl~-~hs~VtsLs~dg~--~LaSGS~DGtIrIWD 1347 (1349)
..|...|.++.|+|...|+.+|+.|..|++-|+... -++.... +...+..+.|.++ .+++.+.|.++.+|-
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999999999999999999999999999987532 1222222 3445777788765 788999999999995
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=5.3e-18 Score=182.91 Aligned_cols=232 Identities=13% Similarity=0.108 Sum_probs=181.1
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE-EecCCCCeEEec---CCCCEEEEEecCCeEEEEe
Q 000694 1105 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE-VIATKEPIRKLD---TYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~-~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWD 1180 (1349)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|++..++..... ..+|.+.|..+. .+.+.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999877543222 235666665533 6788999999999999999
Q ss_pred cCC--cceeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC-ceEEEEE
Q 000694 1181 SSR--TLKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASS 1255 (1349)
Q Consensus 1181 l~~--~~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd-~i~las~ 1255 (1349)
.+. ....+....+-.-+.+ +++++++|+.|..|.+.|.++.+.... ......++.+.++.+ ..+.++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-------~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-------EQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-------hcccceeeeeeecCCCCEEEEec
Confidence 984 2233332223223333 556777899999999999998753322 122345666777744 4555554
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEE--cCC
Q 000694 1256 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLT--AND 1332 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~--dg~ 1332 (1349)
+ .|+|.|.....-+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+...-+++.+.... +|..++| +|+
T Consensus 167 G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 G--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred C--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 2 5899999999999999999999999999999999999999999999999999999999998755 4888887 599
Q ss_pred EEEEEECCCcEEE
Q 000694 1333 IVLCGTETGLIKG 1345 (1349)
Q Consensus 1333 ~LaSGS~DGtIrI 1345 (1349)
+||+|++|..|-|
T Consensus 245 ~lASaSEDh~IDI 257 (313)
T KOG1407|consen 245 MLASASEDHFIDI 257 (313)
T ss_pred eeeccCccceEEe
Confidence 9999999998854
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=6.4e-18 Score=182.64 Aligned_cols=248 Identities=13% Similarity=0.126 Sum_probs=183.1
Q ss_pred ceEEEEEeeeeeecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 000694 1052 SRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 1129 (1349)
Q Consensus 1052 ~~w~~~~t~tl~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSG 1129 (1349)
..|.-...+.+-+..||++.|+|+..+ ...++||+.|.++++||+++|+. +.+++ -..+|..+.|+++|++++.+
T Consensus 35 ~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~--la~~k-~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 35 TVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ--LATWK-TNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred eEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE--EEEee-cCCeeEEEeeccCCcEEEEE
Confidence 345555667777889999999999996 34799999999999999999986 66665 56789999999999987765
Q ss_pred eC-----CCeEEEEEccC-------CeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCccee----eccC
Q 000694 1130 SA-----DKTIGVWQMVQ-------RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD----IYRS 1191 (1349)
Q Consensus 1130 S~-----DGtIrVWDl~t-------g~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~----~~~~ 1191 (1349)
.. .+.|.++|++. .++.. ....+...++. |.+-+..|++|..||.|..||....... ..+.
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~-kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYL-KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS 190 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceE-EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence 43 47899999973 22222 22333344444 6789999999999999999999853222 2234
Q ss_pred CCeEEEEe-eC-CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC-CeE------
Q 000694 1192 KGIKSMSV-VQ-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG-SNI------ 1262 (1349)
Q Consensus 1192 ~~V~~La~-~d-g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD-gtI------ 1262 (1349)
+.|+.+.+ ++ ..+++||.|.+-++||..+....+. .....|+++.+++|..-.++.++..+ ..|
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt-------y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r 263 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT-------YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR 263 (327)
T ss_pred cccccccccCCcceEEecccCccceeeeccceeeEEE-------eeecccccceecccccceEEecCCceeeeeeeeccc
Confidence 46999998 44 4677899999999999998754322 12347889999998765555443222 112
Q ss_pred ------EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1263 ------KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1263 ------rIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
++|++-..+.+..+++|-++|++++|+|+|+-.++|+.||.|++....
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 222222223456778999999999999999999999999999997543
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=1e-17 Score=192.44 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=183.8
Q ss_pred ccCCCCEEEEEE-c--CCEEEEEECCCcEEEEECCCC--------ceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCC
Q 000694 1066 HKCSGAVTALIY-Y--KGLLCSGFSDGSIKMWDIKKQ--------SAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADK 1133 (1349)
Q Consensus 1066 ~gH~~~Vt~Laf-s--dg~LaSGS~DGtIrVWDl~tg--------~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DG 1133 (1349)
-.|.+.|+.+.+ + +..+|+++..|.|.|||..+. ++.+-..+.||.+.-.+++|++... .|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 358999999998 3 447999999999999998642 2223347889999888999997654 699999999
Q ss_pred eEEEEEccCCeEE------EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe---eCCEE
Q 000694 1134 TIGVWQMVQRKLE------LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV---VQGKI 1204 (1349)
Q Consensus 1134 tIrVWDl~tg~~~------~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~---~dg~L 1204 (1349)
+|++||+...... ...+.+|.. .|..++| ..+.+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~-------------------------------------~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHED-------------------------------------VVEDVAWHPLHEDLF 243 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCc-------------------------------------ceehhhccccchhhh
Confidence 9999999654321 011111111 2455555 33455
Q ss_pred EEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCe
Q 000694 1205 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTI 1283 (1349)
Q Consensus 1205 lSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~V 1283 (1349)
.+++.|+.+.+||++++.. .+.+....|..+++++.|+|-.-++++.++.|++|.+||+++ ..++.++.+|...|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred eeecCCCeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 6788899999999996421 122444678999999999999888877777799999999987 67889999999999
Q ss_pred EEEEEecCC-CEEEEEeCCCcEEEEECCCCcE--------------EEEEeCCC-CeEEEEEcCC---EEEEEECCCcEE
Q 000694 1284 QAMAVVEDF-IYLNYNSSASSLQIWLRGTQQK--------------VGRISAGS-KITSLLTAND---IVLCGTETGLIK 1344 (1349)
Q Consensus 1284 tsLafSPDg-~~LaSGS~DGtVrVWDl~tg~~--------------l~sl~~hs-~VtsLs~dg~---~LaSGS~DGtIr 1344 (1349)
..+.|+|+. ..||++|.|+.+.|||+..-.. ++.-.||. .|..++|++. .+++.++|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999964 6789999999999999764322 23333444 3999999744 999999999999
Q ss_pred EeeC
Q 000694 1345 GWIP 1348 (1349)
Q Consensus 1345 IWD~ 1348 (1349)
||.+
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 9976
No 97
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=7.7e-17 Score=198.87 Aligned_cols=225 Identities=12% Similarity=0.168 Sum_probs=147.8
Q ss_pred eeecccCCCCEEEEEEcC---CEEEEEECCCcEEEEECCCCce------eEEEEeccCCCcEEEEEEcCCCCE-EEEEeC
Q 000694 1062 LEASHKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSA------MLVWDVKEHRKAVTSFSLFEPGES-LLSGSA 1131 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafsd---g~LaSGS~DGtIrVWDl~tg~~------~~i~tL~gHss~VtsLafSpdg~~-LaSGS~ 1131 (1349)
+....+|.+.|++++|++ .+|++|+.||+|+|||+.++.. ..+..+.+|...|.+++|+|++.. +++|+.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 345689999999999962 4799999999999999976421 134567899999999999999876 579999
Q ss_pred CCeEEEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeC
Q 000694 1132 DKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCM 1209 (1349)
Q Consensus 1132 DGtIrVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~ 1209 (1349)
||+|++||+++++..... .+...|.++ +++|..+++ ++.
T Consensus 147 DgtIrIWDl~tg~~~~~i--~~~~~V~SlswspdG~lLat-------------------------------------~s~ 187 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLLSG-------------------------------------TCV 187 (568)
T ss_pred CCeEEEEECCCCcEEEEE--ecCCcEEEEEECCCCCEEEE-------------------------------------Eec
Confidence 999999999888654322 122334332 233333333 445
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEE-----EEEcCCceEEEEEecCC---CeEEEEECCC-CCeEEEecCC-
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINS-----LVVYKDWLYSASSSVEG---SNIKEWRRHR-KPQISIAPEK- 1279 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~s-----L~~~pd~i~las~S~dD---gtIrIWDl~t-~~li~tl~gH- 1279 (1349)
|+.|++||++++... ..+.+|...+.+ ..+++++.++++++.++ +.|++||+++ +.++..+..+
T Consensus 188 D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 188 GKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred CCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 566666666555321 122344333222 23346666666655443 4799999985 5666555432
Q ss_pred -CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEcCC
Q 000694 1280 -GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS---AGSKITSLLTAND 1332 (1349)
Q Consensus 1280 -~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~---~hs~VtsLs~dg~ 1332 (1349)
.+.+......++|.++++|+.|++|++|++..+. +..+. ...++.+++|-++
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccc
Confidence 2333334345569999999999999999997764 33333 2344667776544
No 98
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=190.35 Aligned_cols=234 Identities=15% Similarity=0.214 Sum_probs=190.5
Q ss_pred cCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1067 KCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1067 gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~-gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
-|.++|.|+.|+.+ .+|+|+.||.|+||.+.+|.+ ++.|. +|+..|+|+.|+.|+..+++++.|.++|+.-+.+|
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 47889999999744 699999999999999999987 77775 89999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeec----cCCCeEEEEe-eC--CEEEEEeCCCcE
Q 000694 1144 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIY----RSKGIKSMSV-VQ--GKIYIGCMDSSI 1213 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~----~~~~V~~La~-~d--g~LlSGs~DGsI 1213 (1349)
++. ..+.+|...|+. +..+|+.+++++.||+|++|+... .....+ ....|..+.. |. .+++.+...++|
T Consensus 339 K~L-KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCL-KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhH-HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 886 456788888876 679999999999999999999873 222222 2233777665 44 468888889999
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1293 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~ 1293 (1349)
++.++.......+... ...++...+...+|.+.++.+.+ +|+.++.|...+|.+.+++..|...|.+++-+|..+
T Consensus 418 ~imn~qGQvVrsfsSG----kREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSG----KREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred EEEeccceEEeeeccC----CccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 9999876543332111 12234445556777776665543 688999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEE
Q 000694 1294 YLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1294 ~LaSGS~DGtVrVWD 1308 (1349)
.+|+-+.||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999994
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=1.6e-16 Score=183.19 Aligned_cols=263 Identities=17% Similarity=0.241 Sum_probs=201.6
Q ss_pred CCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 000694 1070 GAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1070 ~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~ 1148 (1349)
..|.|++|. +|.++||.++|.|.||+..+.+. .+....|.+.|.+++.-.+|. |+||+.|+.|..||-+-.+....
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceE--EeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccc
Confidence 679999995 77999999999999999977554 445559999999999999997 55599999999999443444344
Q ss_pred EEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEccCCccc
Q 000694 1149 EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAVSNNVER 1224 (1349)
Q Consensus 1149 ~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~ 1224 (1349)
.++...++|..+...+.-++.|+..+.|..=.+++.......++ ....++. .++.+++++.|+.+++|+ ..+.
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~- 400 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL- 400 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce-
Confidence 56677788999886666688888888877766665443333333 4666666 456788999999999999 2211
Q ss_pred ccccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000694 1225 EIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS 1303 (1349)
Q Consensus 1225 ~i~~~lk~~~~-h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGt 1303 (1349)
.|.. -..+..++.|||.+..++ +. ..|...+.|..+...+..-.. ..++++++|+|+|.+||.|+.|+.
T Consensus 401 -------~wt~~~~d~~~~~~fhpsg~va~-Gt-~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 401 -------EWTKIIEDPAECADFHPSGVVAV-GT-ATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred -------eEEEEecCceeEeeccCcceEEE-ee-ccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 2222 357889999999994444 33 366899999998777766665 889999999999999999999999
Q ss_pred EEEEECCCCcEE-EEEe--CCCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1304 LQIWLRGTQQKV-GRIS--AGSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1304 VrVWDl~tg~~l-~sl~--~hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
|+||.+...... .... ..+.|+.+.|+ +++|.+-+-|-.|-.|.+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999976654433 2222 13669999984 789999999999999965
No 100
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.4e-17 Score=194.90 Aligned_cols=281 Identities=13% Similarity=0.139 Sum_probs=199.8
Q ss_pred EEeeeeeecccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCC
Q 000694 1057 VHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADK 1133 (1349)
Q Consensus 1057 ~~t~tl~~~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~-LaSGS~DG 1133 (1349)
.++.....+.||++.|+||..+ +.+|++|+.||+|+||.+.+|.+ ++++. -.+.|.||+|+|.+.. ++..+.++
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--EEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 3444445678999999999995 34899999999999999999987 55554 4568999999998763 22333333
Q ss_pred eEEEEEccCCe------------------------------------EEEEEEecCCCCeEEec--CCCCEEEEEecCC-
Q 000694 1134 TIGVWQMVQRK------------------------------------LELIEVIATKEPIRKLD--TYGKTIFASTQGH- 1174 (1349)
Q Consensus 1134 tIrVWDl~tg~------------------------------------~~~~~~~~h~~~V~sLs--~~g~~LvsgS~Dg- 1174 (1349)
.+.|-+..-|. .-......|...|..+. ..|++++++..++
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 34444322220 00113345666666644 6788998887654
Q ss_pred --eEEEEecCCc-c-eeeccCCC-eEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC
Q 000694 1175 --RMKVIDSSRT-L-KDIYRSKG-IKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 1248 (1349)
Q Consensus 1175 --tIkVWDl~~~-~-~~~~~~~~-V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd 1248 (1349)
.|.|+++.+. . ..+...++ |.++.| |....+..+....|++||+...... +.+......|.++++||.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelv------KkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELV------KKLLTGSKWISSMSIHPN 618 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHH------HHHhcCCeeeeeeeecCC
Confidence 6889998842 2 22323333 889999 5554444556688999999876432 222344567899999997
Q ss_pred ceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE------CCCC---cEEEEE
Q 000694 1249 WLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL------RGTQ---QKVGRI 1318 (1349)
Q Consensus 1249 ~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD------l~tg---~~l~sl 1318 (1349)
+-.++.++ .|+.+..||+.- .++.+++..|...+++++|++.-.++++|+.||++.|+. +-.. -++..+
T Consensus 619 GDnli~gs-~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 619 GDNLILGS-YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred CCeEEEec-CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 76666555 477899999964 567888999999999999999999999999999999984 2221 245666
Q ss_pred eCCCC-----eEEEEEcCC--EEEEEECCCcEEEee
Q 000694 1319 SAGSK-----ITSLLTAND--IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1319 ~~hs~-----VtsLs~dg~--~LaSGS~DGtIrIWD 1347 (1349)
.+|.. |....|+++ .|++++.||+|++|-
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 66653 666778876 999999999999993
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1e-17 Score=183.60 Aligned_cols=285 Identities=13% Similarity=0.212 Sum_probs=209.0
Q ss_pred ceeeeccccccchhhhcc-ccceeecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEcC-C-EEEEEECC
Q 000694 1012 GMQKLIRSSEGVRESLRR-LSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYK-G-LLCSGFSD 1088 (1349)
Q Consensus 1012 gL~~L~~~s~~v~~sLR~-lk~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafsd-g-~LaSGS~D 1088 (1349)
..+++.||.+++...... ...+.-.++- ......|..-....+..+.||.|.|+||.|++ + ++++|+.|
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASA--------DhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASA--------DHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeeccc--------ccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 356788888887752211 1111111110 01123455555555667899999999999964 3 69999999
Q ss_pred CcEEEEEC------CC------------------------------C--ceeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 000694 1089 GSIKMWDI------KK------------------------------Q--SAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 1130 (1349)
Q Consensus 1089 GtIrVWDl------~t------------------------------g--~~~~i~tL~gHss~VtsLafSpdg~~LaSGS 1130 (1349)
++..||.. .. + -..++..+.||.+.|.+..|-..|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999972 10 0 0124567889999999999999999999999
Q ss_pred CCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcc--eeeccCCC--eEEEEe-eCCE
Q 000694 1131 ADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKG--IKSMSV-VQGK 1203 (1349)
Q Consensus 1131 ~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~~~--V~~La~-~dg~ 1203 (1349)
.|.+..+||+++|..+. .+.+|....+..+ +....+++.+.|.+.++||++... ...+.+|. |++..| .+.+
T Consensus 292 WDRTAnlwDVEtge~v~-~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVN-ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred ccccceeeeeccCceec-cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence 99999999999998764 5567777776654 677788999999999999998543 33444544 999999 8889
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE----EecCC
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS----IAPEK 1279 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~----tl~gH 1279 (1349)
+++|++|.+|++||+++... ++..+. ...+++.++++.+...++. ..++..|++||++...+.+ .-.+|
T Consensus 371 vVSgSDDrTvKvWdLrNMRs-----plATIR-tdS~~NRvavs~g~~iIAi-PhDNRqvRlfDlnG~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRS-----PLATIR-TDSPANRVAVSKGHPIIAI-PHDNRQVRLFDLNGNRLARLPRTSRQGH 443 (481)
T ss_pred eeecCCCceEEEeeeccccC-----cceeee-cCCccceeEeecCCceEEe-ccCCceEEEEecCCCccccCCccccccc
Confidence 99999999999999988742 222222 2467888898888766554 3467889999998755433 34588
Q ss_pred CCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCC
Q 000694 1280 GTTIQAMAVVEDF--IYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1280 ~~~VtsLafSPDg--~~LaSGS~DGtVrVWDl~tg 1312 (1349)
..-|+|++|..+. .-|+++|.|..+.-|++...
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8999999998543 35788999999999987653
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.3e-17 Score=179.80 Aligned_cols=253 Identities=13% Similarity=0.158 Sum_probs=190.5
Q ss_pred EEEEECCCcEEEEECCCC----------ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe
Q 000694 1082 LCSGFSDGSIKMWDIKKQ----------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI 1151 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~tg----------~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~ 1151 (1349)
+++|++...|.-+++.-. ...++..+..|.++|++++. ++.+++|||.|-+|+|||+...... ..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-g~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-GILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-ccee
Confidence 678888888777766421 12235677899999999998 6899999999999999999876544 3456
Q ss_pred cCCCCeEEecC--CC--CEEEEEecCCeEEEEecCC-cceeeccCC--CeEEEEe-eCCEEE-EEeCCCcEEEEEccCCc
Q 000694 1152 ATKEPIRKLDT--YG--KTIFASTQGHRMKVIDSSR-TLKDIYRSK--GIKSMSV-VQGKIY-IGCMDSSIQELAVSNNV 1222 (1349)
Q Consensus 1152 ~h~~~V~sLs~--~g--~~LvsgS~DgtIkVWDl~~-~~~~~~~~~--~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~ 1222 (1349)
.|.+.|+++.. .. +.+++|+.||.|.+|+... .....+..| .|+.+++ |.|+++ +.+.|+.++.||+-.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 78889998653 22 3799999999999999974 223333322 3999999 999887 68999999999999886
Q ss_pred cccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000694 1223 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 1302 (1349)
Q Consensus 1223 ~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DG 1302 (1349)
...+. +. ....+.+.|.|.+-+.+... ...|-+|.+.+..+...+... ..+.++.|- ++..+++|+.|+
T Consensus 161 ~a~v~------~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 161 VAFVL------NL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred cceee------cc-CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCc
Confidence 43321 11 22334588888887554443 347999999876665554422 445566553 677899999999
Q ss_pred cEEEEECCCCcEEEEEeCCC-CeEEEEE----cCCEEEEEECCCcEEEeeC
Q 000694 1303 SLQIWLRGTQQKVGRISAGS-KITSLLT----ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1303 tVrVWDl~tg~~l~sl~~hs-~VtsLs~----dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|.+||..++.+...+.+|. +|-++.+ .+.+|++++.||.|+|||.
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99999999999999998766 4888874 2569999999999999984
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=1.1e-17 Score=191.82 Aligned_cols=228 Identities=17% Similarity=0.167 Sum_probs=181.5
Q ss_pred cCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 000694 1067 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
+|...|.+++++ || +|++|+.|..|.||+..+.+. ++.+++|.+.|.+++|-.....+++++.|++|++|+++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH--VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch--hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 899999999995 55 799999999999999999765 88899999999999998888889999999999999997765
Q ss_pred EEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcceeeccCC--CeEEEEe-eCCEEEEEeCCCcEEEEEcc
Q 000694 1145 LELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKDIYRSK--GIKSMSV-VQGKIYIGCMDSSIQELAVS 1219 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~--~V~~La~-~dg~LlSGs~DGsI~IWDl~ 1219 (1349)
.+ ....+|.+.|.+++ ..+..+.+|+.|+++++|++....+.++.++ .+.|+++ .+.++++|+.||.|.+|++.
T Consensus 278 ~v-etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 278 YV-ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred HH-HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 43 45678999999987 4455566666999999999987666666554 4999999 88999999999999999998
Q ss_pred CCcccccccc---cccc---ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEecCCCCCeEEEEEe
Q 000694 1220 NNVEREIKAP---FKSW---RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1220 t~~~~~i~~~---lk~~---~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~----~li~tl~gH~~~VtsLafS 1289 (1349)
..+..-.... +... -.+...|++++..|..-.+++++ .+|.|++|-+..+ .++..+. -.+.|++++|+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 7643222110 0000 01124789999999888777765 5789999999776 3444444 56789999999
Q ss_pred cCCCEEEEEe
Q 000694 1290 EDFIYLNYNS 1299 (1349)
Q Consensus 1290 PDg~~LaSGS 1299 (1349)
++|+++++|.
T Consensus 435 ~sgk~ivagi 444 (479)
T KOG0299|consen 435 NSGKRIVAGI 444 (479)
T ss_pred cCCCEEEEec
Confidence 9999777663
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.3e-17 Score=178.59 Aligned_cols=240 Identities=13% Similarity=0.202 Sum_probs=185.3
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCce-eEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~-~~i~tL~gHss~VtsLafSp--dg~~LaSGS~DGtIrVWD 1139 (1349)
..+|.+.|..+..+ +.+|||++.|++|+|+.+++... .++.++.||.+||..++|.. .|..|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 46789999877764 66899999999999999987553 67889999999999999975 789999999999999999
Q ss_pred ccCCeEEEE-EEecCCCCeEEec--C--CCCEEEEEecCCeEEEEecCCc----ceeeccC--CCeEEEEe-eC---C--
Q 000694 1140 MVQRKLELI-EVIATKEPIRKLD--T--YGKTIFASTQGHRMKVIDSSRT----LKDIYRS--KGIKSMSV-VQ---G-- 1202 (1349)
Q Consensus 1140 l~tg~~~~~-~~~~h~~~V~sLs--~--~g~~LvsgS~DgtIkVWDl~~~----~~~~~~~--~~V~~La~-~d---g-- 1202 (1349)
-.+|+.... ....|...|++++ | .|-.+++++.||.|.|.+.+.. ...+... .+|+++.+ |. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 888864322 2346888888865 3 4667899999999999988743 2233333 34788877 32 2
Q ss_pred ----------EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCc---eEEEEEecCCCeEEEEECCC
Q 000694 1203 ----------KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1203 ----------~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~---i~las~S~dDgtIrIWDl~t 1269 (1349)
++++|+.|+.|++|+...+.-.. .+.+.+|...++.+++.|.. ...++..+.||++.||..+.
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhh----hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 58899999999999998873221 13468899999999999873 33333445789999998753
Q ss_pred C--C-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1270 K--P-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1270 ~--~-li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
. + ....+......++.+.||+.|..|+.++.|+.|.+|.
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1 1 1223333557899999999999999999999999995
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.3e-16 Score=172.73 Aligned_cols=236 Identities=12% Similarity=0.134 Sum_probs=182.7
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec-CCCCeEEecCCCCEEEEEec--CCeEEEEe
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA-TKEPIRKLDTYGKTIFASTQ--GHRMKVID 1180 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~-h~~~V~sLs~~g~~LvsgS~--DgtIkVWD 1180 (1349)
.+.+..-.+.|+++.|+++|.++++++.|.++++||..+|+........ ..-.+.++..+.+.++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 4455656789999999999999999999999999999999887544332 23335567777888887776 78999999
Q ss_pred cC-CcceeeccCCC--eEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1181 SS-RTLKDIYRSKG--IKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1181 l~-~~~~~~~~~~~--V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
+. ......+.+|. |..+.. .+..+++++.|++|++||++..+.... ....+. ...++.|.+.+.+.+
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------l~~~~~--pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------LNLSGR--PIAAFDPEGLIFALA 158 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE------EecCCC--cceeECCCCcEEEEe
Confidence 87 45667777766 888888 456788999999999999996643221 122223 346889999888877
Q ss_pred ecCCCeEEEEECCC--CCeEEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC---C--e-
Q 000694 1256 SVEGSNIKEWRRHR--KPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS---K--I- 1324 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t--~~li~tl~---gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs---~--V- 1324 (1349)
...+ .|++||++. +.+..++. +.....+.+.|||||++++.+...+.+++.|.-+|....++..+. . +
T Consensus 159 ~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 6433 899999976 34444444 335688999999999999999999999999999999999888632 1 2
Q ss_pred EEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1325 TSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1325 tsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.++.++++++++|+.||+|.+|+.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 334468999999999999999984
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.75 E-value=2.8e-17 Score=189.78 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=175.0
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE----EEEEecCCCCeEE--ecCCCCEEEEEecCCeEEE
Q 000694 1105 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE----LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKV 1178 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~----~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkV 1178 (1349)
..+++|+..|.++++.|.|.+++|||.|.+|++||+...... ....+.....|.+ +++.++.|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 467899999999999999999999999999999999653211 1122333344554 6689999999999999999
Q ss_pred EecCCcce-eecc------------CC--CeEEEEe-eC--CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCe
Q 000694 1179 IDSSRTLK-DIYR------------SK--GIKSMSV-VQ--GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPI 1240 (1349)
Q Consensus 1179 WDl~~~~~-~~~~------------~~--~V~~La~-~d--g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I 1240 (1349)
+|-.+... .+.+ +| .++|-.| |. +.+++++.||++++||+...+...-....+...+..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99885321 1111 22 2677777 44 569999999999999998764322111112234456788
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-E
Q 000694 1241 NSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-K 1314 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dDgtIrIWDl~t~---~li~tl~gH~~--~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~-~ 1314 (1349)
++.+|++++..++++ ..||.|.+|+..+. .....-..|.. .|+++.||+||++|++-|.|+++++||++..+ +
T Consensus 321 tsC~~nrdg~~iAag-c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAG-CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeecCCCcchhhhc-ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 999999999987665 46889999997542 22334446765 99999999999999999999999999998754 5
Q ss_pred EEEEeC-CC--CeEEEEE--cCCEEEEEEC------CCcEEEeeC
Q 000694 1315 VGRISA-GS--KITSLLT--ANDIVLCGTE------TGLIKGWIP 1348 (1349)
Q Consensus 1315 l~sl~~-hs--~VtsLs~--dg~~LaSGS~------DGtIrIWD~ 1348 (1349)
+....+ .. .-+..+| +.++|++|+. .|++.+||.
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 555444 11 2344444 5567887754 567888775
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=181.46 Aligned_cols=239 Identities=19% Similarity=0.202 Sum_probs=191.7
Q ss_pred eeeeecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 000694 1060 QILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1060 ~tl~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrV 1137 (1349)
+++.++.||+..|+.+.+++. .+++++.|..|+||....... ......|.++|+.+..+|.|+||++++.||+..+
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--ccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 345678999999999999754 599999999999999987654 4556789999999999999999999999999999
Q ss_pred EEccCCeEEEEEEec-CCCCeEE--ecCCCCEEEEEecCCeEEEEecCCc-ceeeccCC--CeEEEEe-eCCEEE-EEeC
Q 000694 1138 WQMVQRKLELIEVIA-TKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKDIYRSK--GIKSMSV-VQGKIY-IGCM 1209 (1349)
Q Consensus 1138 WDl~tg~~~~~~~~~-h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~~~--~V~~La~-~dg~Ll-SGs~ 1209 (1349)
.|+++|......... ..-.+++ |+++|..+.+|+.||.+++||+... ....+.+| .|..+.| .+|+.+ +++.
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 999999887654443 2223454 7799999999999999999999843 33333334 3999999 777655 6899
Q ss_pred CCcEEEEEccCCccccccccccccc-cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEecCCCCCeE
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~-~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~----t~~li~tl~gH~~~Vt 1284 (1349)
|+.|++||++..+.. +.+. ....++.++.+.+.+.+++.+ +..+++|-.. ....+..+..|.+..+
T Consensus 410 d~~V~lwDLRKl~n~------kt~~l~~~~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st 480 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNF------KTIQLDEKKEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEIKELADHSGLST 480 (506)
T ss_pred CCeEEEEEehhhccc------ceeeccccccceeEEEcCCCCeEEee---cceeEEEEEecccccceeeehhhhcccccc
Confidence 999999999876522 1222 234579999999999999887 3345555544 5677888888999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
++.|..+.+++++||.|..++++.+
T Consensus 481 ~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999888753
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.74 E-value=6.5e-16 Score=186.90 Aligned_cols=296 Identities=13% Similarity=0.134 Sum_probs=213.5
Q ss_pred CCceEEEEEeeeeeecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE-E
Q 000694 1050 NISRISCVHTQILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-L 1126 (1349)
Q Consensus 1050 ~~~~w~~~~t~tl~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~-L 1126 (1349)
....|+....+.+.+++++.+.|+++.-++- .+|.|..+|+|.++|++.++. +.+|+...+.|++++|..||.. +
T Consensus 183 ~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--l~sFk~d~g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--LMSFKQDWGRVTSLSFRTDGNPLL 260 (910)
T ss_pred cEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE--EEEEEccccceeEEEeccCCCeeE
Confidence 3456777777778889999999999999764 699999999999999999876 7788733599999999999965 6
Q ss_pred EEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecC---C--cceeeccCC--CeEEE
Q 000694 1127 LSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS---R--TLKDIYRSK--GIKSM 1197 (1349)
Q Consensus 1127 aSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~---~--~~~~~~~~~--~V~~L 1197 (1349)
++|+..|.+.+||++..+........|.+.|.. +.+....+++.+.|+.+++|=.+ + .......+| +-.|+
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 678888999999999888776666677676665 44666778888888887777433 1 111111111 13333
Q ss_pred Ee--eCCE-----------------------------------------------------------------EEE-EeC
Q 000694 1198 SV--VQGK-----------------------------------------------------------------IYI-GCM 1209 (1349)
Q Consensus 1198 a~--~dg~-----------------------------------------------------------------LlS-Gs~ 1209 (1349)
.| .+|+ +++ .-.
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 33 1221 222 223
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe---cCCCCCeEEE
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA---PEKGTTIQAM 1286 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl---~gH~~~VtsL 1286 (1349)
+...+.|+++........-....+......+++++.++-+.+.+.+. ..|.|.+|++++|-....+ ..|..+|+++
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-cCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 44556666655443222111112222345677788887777776654 3679999999999888888 4899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEE-----------------------------------------EEeCCC-Ce
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGTQQKVG-----------------------------------------RISAGS-KI 1324 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~tg~~l~-----------------------------------------sl~~hs-~V 1324 (1349)
+...-++.+++++.+|.+++||..++..+. .+.+|+ +|
T Consensus 500 a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI 579 (910)
T ss_pred EecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence 999999999999999999999976654222 223333 48
Q ss_pred EEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1325 TSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1325 tsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
++++| ||++|++++.|++|++||.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEec
Confidence 88887 4889999999999999996
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.1e-16 Score=184.84 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=207.0
Q ss_pred CCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1069 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1069 ~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs-s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
..+|+|+||+ .+.||.|=.||.|.+|++..+-+ +...+.||. ..|.+++|++ +..|+|.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 4689999996 45799999999999999998543 445566554 6899999994 55689999999999999999887
Q ss_pred EEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcceeecc----C-CCeEEEEe-eCCE-EEEEeCCCcEEEE
Q 000694 1146 ELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKDIYR----S-KGIKSMSV-VQGK-IYIGCMDSSIQEL 1216 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~~~~~----~-~~V~~La~-~dg~-LlSGs~DGsI~IW 1216 (1349)
.. ......+.|++++ +.+..+..|+.||.+..++.......+.. . ..+-++.| +++. +++||.||.|++|
T Consensus 103 ~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 64 4455677888855 77888999999997777777643332221 2 34889999 7766 8999999999999
Q ss_pred EccCCccccc-ccccccc-ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1217 AVSNNVEREI-KAPFKSW-RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1217 Dl~t~~~~~i-~~~lk~~-~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
|...+....+ ....... ......|.++.+-.++..+.+- .-|+|++||...+.++..+..|...|.+++..+++.+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 9998854332 1111111 1234556777777666544332 3679999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcE--EEE--EeCCC-CeEEEEEcCCEEEEEECCCcEEE
Q 000694 1295 LNYNSSASSLQIWLRGTQQK--VGR--ISAGS-KITSLLTANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~--l~s--l~~hs-~VtsLs~dg~~LaSGS~DGtIrI 1345 (1349)
++++|.|+.|.-+...+... +.. ..+|. .|.+++.-+..+++|+.|+++.+
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAI 315 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEE
Confidence 99999999999997666543 211 22344 49999988889999999998876
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=3.3e-15 Score=168.81 Aligned_cols=256 Identities=11% Similarity=0.117 Sum_probs=176.2
Q ss_pred CEEEEEEc-CC-EE-EEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEEccCCeEE
Q 000694 1071 AVTALIYY-KG-LL-CSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLS-GSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1071 ~Vt~Lafs-dg-~L-aSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaS-GS~DGtIrVWDl~tg~~~ 1146 (1349)
.+.+++|+ ++ .+ ++++.|+.|++||..+++. ...+..+.. +..++|+|+++.+++ ++.|+.|++||+.+++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 46788895 44 44 6778899999999998765 455554443 567899999997765 456899999999887665
Q ss_pred EEEEecCCCCeEEecCCCCEEEEEecCC-eEEEEecCCcce--eeccCCCeEEEEe-eCCE-EEEE-eCCCcEEEEEccC
Q 000694 1147 LIEVIATKEPIRKLDTYGKTIFASTQGH-RMKVIDSSRTLK--DIYRSKGIKSMSV-VQGK-IYIG-CMDSSIQELAVSN 1220 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs~~g~~LvsgS~Dg-tIkVWDl~~~~~--~~~~~~~V~~La~-~dg~-LlSG-s~DGsI~IWDl~t 1220 (1349)
.....+....-..+++++..+++++.++ .+.+||...... .........++.+ +++. ++++ ..++.|++||+.+
T Consensus 109 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 109 AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 4332222212234678999999888775 467788864221 1223344667777 6765 4444 4699999999998
Q ss_pred Cccccccc-cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE-
Q 000694 1221 NVEREIKA-PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN- 1298 (1349)
Q Consensus 1221 ~~~~~i~~-~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG- 1298 (1349)
++...... ..............+.++|++.++......++.+.+||.++++....+. +...+.+++|+|+|.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc
Confidence 75321100 0000000112234678899887654433345689999999888776654 45579999999999999886
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 000694 1299 SSASSLQIWLRGTQQKVGRISAGSKITSLLTA 1330 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d 1330 (1349)
+.+|.|.+||..+++.+.++..+...+.+++.
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEcccccceeEeC
Confidence 46899999999999999999877667777654
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.7e-16 Score=178.36 Aligned_cols=276 Identities=11% Similarity=0.170 Sum_probs=212.7
Q ss_pred ccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccC
Q 000694 1066 HKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~t 1142 (1349)
+.-.+.|++|.|+++ .+.+|+.||+++||.+.......++.+.--..+|.+.+|.|+|. .++++|.-..+..||+.+
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 344679999999876 69999999999999998776556777766678999999999998 899999999999999998
Q ss_pred CeEEEEEEe-cCCC-CeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccC-CCeEEEEe-eCC-EEEEEeCCCcEE
Q 000694 1143 RKLELIEVI-ATKE-PIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRS-KGIKSMSV-VQG-KIYIGCMDSSIQ 1214 (1349)
Q Consensus 1143 g~~~~~~~~-~h~~-~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~-~~V~~La~-~dg-~LlSGs~DGsI~ 1214 (1349)
.+....... ++.. .+.. +++++++|+..+..|.|.+..... .....++- ..|..+.| .++ .+++.+.+|.|.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 876432221 2222 2333 568999999999999999987652 33333333 33888888 665 466788899999
Q ss_pred EEEccCCccccccccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEecCCCCCeEEEE
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGTTIQAMA 1287 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t------~~li~tl~gH~~~VtsLa 1287 (1349)
+||++..... +.|... +-.-++++.++++.++++++ +.|.|.|||.++ .+++..+..-...|+++.
T Consensus 370 v~nl~~~~~~------~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQNSCL------HRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEecCCcceE------EEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999987432 233332 23346788888888888876 678999999654 356666666677899999
Q ss_pred EecCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCCC----CeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1288 VVEDFIYLNYNS--SASSLQIWLRGTQQKVGRISAGS----KITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1288 fSPDg~~LaSGS--~DGtVrVWDl~tg~~l~sl~~hs----~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
|+||++.||.+| .+..+++-.+.+......+...+ .|+|++|+ |.+|+.|..+|.+.+|..
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999999988776 57889999998888777777522 38999987 569999999999999964
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.6e-16 Score=170.71 Aligned_cols=288 Identities=11% Similarity=0.102 Sum_probs=199.6
Q ss_pred EEEeeeeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEe--ccCCCcEEEEEEcCCCCE-EEEEe
Q 000694 1056 CVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGES-LLSGS 1130 (1349)
Q Consensus 1056 ~~~t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL--~gHss~VtsLafSpdg~~-LaSGS 1130 (1349)
..|...+....||.+.|++++|+ || +|+|++.|++|++|+++.-....-+.+ .-.-+-.+.+.|.||-+- ++++-
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 34444456678999999999994 66 699999999999999986322111111 001134678899999865 44666
Q ss_pred CCCeEEEEEccC---CeEEEE--------EEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCC--eE
Q 000694 1131 ADKTIGVWQMVQ---RKLELI--------EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG--IK 1195 (1349)
Q Consensus 1131 ~DGtIrVWDl~t---g~~~~~--------~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~--V~ 1195 (1349)
...++++|.+.. |..... +...|...+.+ +..++.+|++++.|..|.+|++.++......... -.
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNY 232 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccccccc
Confidence 677899997643 221111 11234445555 4578889999999999999999976554433222 23
Q ss_pred EEEe-eCCEEEE-EeCCCcEEEEEccCCccccccccccc--cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--
Q 000694 1196 SMSV-VQGKIYI-GCMDSSIQELAVSNNVEREIKAPFKS--WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-- 1269 (1349)
Q Consensus 1196 ~La~-~dg~LlS-Gs~DGsI~IWDl~t~~~~~i~~~lk~--~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-- 1269 (1349)
..++ |+|++++ ++..--|++|.+--++..+++...+. +.+|...|..++|+++...+++.+ .||++++||++-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kDG~wriwdtdVrY 311 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KDGKWRIWDTDVRY 311 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cCCcEEEeeccceE
Confidence 3344 8998775 66788899999865554444444443 357889999999999998888876 588999999752
Q ss_pred --CC---eEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-C-CCeEEEEEc--CCEEEE
Q 000694 1270 --KP---QISIA----PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-G-SKITSLLTA--NDIVLC 1336 (1349)
Q Consensus 1270 --~~---li~tl----~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-h-s~VtsLs~d--g~~LaS 1336 (1349)
++ .++.. ...++....+..+|+|+.||.+. ...++++..++|+....+.. | +.|.+++|+ |+++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 11 12221 12234455899999999988765 56799999999998887774 4 459999985 789888
Q ss_pred EECCCcEEEe
Q 000694 1337 GTETGLIKGW 1346 (1349)
Q Consensus 1337 GS~DGtIrIW 1346 (1349)
+| |..+++.
T Consensus 391 cG-dr~vrv~ 399 (420)
T KOG2096|consen 391 CG-DRYVRVI 399 (420)
T ss_pred ec-ceeeeee
Confidence 87 4556664
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=5.9e-16 Score=170.15 Aligned_cols=228 Identities=15% Similarity=0.236 Sum_probs=176.1
Q ss_pred eecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Q 000694 1063 EASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVW 1138 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~--~LaSGS~DGtIrVW 1138 (1349)
+....|.++|.+++|+ +| .+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .|+|||.|++|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 4457899999999996 44 69999999999999999986 466778999999999987665 79999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeecc-----CCCeEEEEe-eC-CEEEEEeCCC
Q 000694 1139 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSV-VQ-GKIYIGCMDS 1211 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~-----~~~V~~La~-~d-g~LlSGs~DG 1211 (1349)
|.+....+.. ....+.+.+...-...++++..++.|.+|++++....+.. ...++|++. .+ ...+.|+-.|
T Consensus 143 D~R~~~pv~t--~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 143 DTRSSNPVAT--LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ccCCCCeeee--eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 9998776533 3345667777777788899999999999999754333222 123888887 43 3446799999
Q ss_pred cEEEEEccCCcc-ccccccccccc------cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE
Q 000694 1212 SIQELAVSNNVE-REIKAPFKSWR------LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1212 sI~IWDl~t~~~-~~i~~~lk~~~------~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vt 1284 (1349)
.+.+..+..+.. ..+ ..+..+ ..-..|++++|||....+++.+ .||++.+||-+....+.+...|..+|+
T Consensus 221 rv~iq~id~~~~~~nF--tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-sDGtf~FWDkdar~kLk~s~~~~qpIt 297 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNF--TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-SDGTFSFWDKDARTKLKTSETHPQPIT 297 (347)
T ss_pred eEEEEecCCCCccCce--eEEEeccCCCCCCceEEecceEeecccceEEEec-CCceEEEecchhhhhhhccCcCCCccc
Confidence 999998877521 111 111111 1124678899999876666655 488999999988878888888999999
Q ss_pred EEEEecCCCEEEEE
Q 000694 1285 AMAVVEDFIYLNYN 1298 (1349)
Q Consensus 1285 sLafSPDg~~LaSG 1298 (1349)
+..|+.+|.++|-+
T Consensus 298 cc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYA 311 (347)
T ss_pred eeEecCCCCEEEEE
Confidence 99999999987654
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.9e-16 Score=188.59 Aligned_cols=234 Identities=15% Similarity=0.145 Sum_probs=189.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc-ce
Q 000694 1108 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT-LK 1186 (1349)
Q Consensus 1108 ~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~-~~ 1186 (1349)
.+|+.+-+.|+|.|+|.+|++++.||.|++|+.....-.......+...|.++...++.+++++.+++|.+|..... ..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 36999999999999999999999999999999766422212222277889999999999999999999999998732 22
Q ss_pred --eeccCCCeEEEEe-eCC-EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 000694 1187 --DIYRSKGIKSMSV-VQG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 1262 (1349)
Q Consensus 1187 --~~~~~~~V~~La~-~dg-~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtI 1262 (1349)
.....-.++++++ .+| .+++|+.|-.|++.++.+.... +.+.+|..+|.++.++|.+.++++.+ .||.|
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~------~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE------KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh------eeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 2223345788888 344 5667999999999999887432 45688999999999999999998876 47799
Q ss_pred EEEECCCCCeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCeEEEEEc-
Q 000694 1263 KEWRRHRKPQISIAPEK--------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA---GSKITSLLTA- 1330 (1349)
Q Consensus 1263 rIWDl~t~~li~tl~gH--------~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~---hs~VtsLs~d- 1330 (1349)
++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+++..+.+.. ++.+.++.|+
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 99999998887766542 23567889999988888888999999999999999999885 3337777775
Q ss_pred -CCEEEEEECCCcEEEeeC
Q 000694 1331 -NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1331 -g~~LaSGS~DGtIrIWD~ 1348 (1349)
|++||+++.||.|-|||.
T Consensus 243 nG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNV 261 (933)
T ss_pred CCcEEeeeccCCcEEEEec
Confidence 889999999999999984
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=2.6e-16 Score=187.17 Aligned_cols=285 Identities=16% Similarity=0.180 Sum_probs=201.3
Q ss_pred eecccCCCCEEEEEEc--C--C-EEEEEECCCcEEEEECCCCc-------------------eeEEEE----------ec
Q 000694 1063 EASHKCSGAVTALIYY--K--G-LLCSGFSDGSIKMWDIKKQS-------------------AMLVWD----------VK 1108 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs--d--g-~LaSGS~DGtIrVWDl~tg~-------------------~~~i~t----------L~ 1108 (1349)
....||.+.|.+++|. . . +||+||.|..||||.+.-+. ...... +.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 4468999999999994 2 3 59999999999999874221 001111 24
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC--eEEEE--------------------------------------
Q 000694 1109 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR--KLELI-------------------------------------- 1148 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg--~~~~~-------------------------------------- 1148 (1349)
||.+.|.++.|+|.+..|+++|.|.++.+|...+. -.+..
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 99999999999999999999999999999976543 11100
Q ss_pred -----------EEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc-------ceeeccCCCeEEEEe-e-CCEEEE
Q 000694 1149 -----------EVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT-------LKDIYRSKGIKSMSV-V-QGKIYI 1206 (1349)
Q Consensus 1149 -----------~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~-------~~~~~~~~~V~~La~-~-dg~LlS 1206 (1349)
...+|-+.|+.+. +.|.++++++.|.+-+++-.-+. .....+++..+|+++ + +-.+++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 0112444444433 44666666666666666543311 122234455888888 5 556778
Q ss_pred EeCCCcEEEEEccCC-------------------------------------------cc----cc-c------------
Q 000694 1207 GCMDSSIQELAVSNN-------------------------------------------VE----RE-I------------ 1226 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~-------------------------------------------~~----~~-i------------ 1226 (1349)
|.+...+|+|+.... .. .+ .
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 888888888875110 00 00 0
Q ss_pred ----------cccccccccCCCCeEEEEEcCCceEEEEEec----CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC
Q 000694 1227 ----------KAPFKSWRLQSKPINSLVVYKDWLYSASSSV----EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1292 (1349)
Q Consensus 1227 ----------~~~lk~~~~h~~~I~sL~~~pd~i~las~S~----dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg 1292 (1349)
.+....+.+|+..|.+++.+|++.++++... +-..|++|+..+...+..+.+|.-.|+.++|||||
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 1112233467888999999999988877542 22469999999988888999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcE----EEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1293 IYLNYNSSASSLQIWLRGTQQK----VGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl~tg~~----l~sl~~hs~-VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
++|++.|.|.++.+|....... ....+.|.+ |++.+|+ +.+++++|.|.+|+||.
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999997644321 223456777 6888875 55899999999999995
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=183.11 Aligned_cols=227 Identities=20% Similarity=0.301 Sum_probs=174.2
Q ss_pred CCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC---
Q 000694 1068 CSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ--- 1142 (1349)
Q Consensus 1068 H~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t--- 1142 (1349)
-.++|.|++-+ .| +|+.|+..|.|++|.+.+|.. +..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 36789999985 56 466666999999999999986 677899999999999999999999999999999998732
Q ss_pred ----Ce-EEEEEEecCCCCeEEec----CCCCEEEEEecCCeEEEEecCCc--ceeeccCCCeEEEEe-e-CCEEEEEeC
Q 000694 1143 ----RK-LELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSV-V-QGKIYIGCM 1209 (1349)
Q Consensus 1143 ----g~-~~~~~~~~h~~~V~sLs----~~g~~LvsgS~DgtIkVWDl~~~--~~~~~~~~~V~~La~-~-dg~LlSGs~ 1209 (1349)
+. .....+.+|.-+|+++. +....+++++.|.++++||+... ...+.....+.++++ | +..+++|+.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC
Confidence 11 11235567888999865 34578999999999999999853 234445566889988 4 456778999
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--CeEEEE
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMA 1287 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~--~VtsLa 1287 (1349)
+|.|.+.++..-. +....+. .+.++.. +..+..+.||.+ .|+|++
T Consensus 238 ~G~I~~~~~~~~~------------~~~~~v~--------------------~k~~~~~-~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 238 EGKIFQNLLFKLS------------GQSAGVN--------------------QKGRHEE-NTQINVLVGHENESAITCLA 284 (476)
T ss_pred cceEEeeehhcCC------------ccccccc--------------------ccccccc-cceeeeeccccCCcceeEEE
Confidence 9999988775432 1101111 1112211 234455667776 999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEE
Q 000694 1288 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITSLLT 1329 (1349)
Q Consensus 1288 fSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~-~hs~VtsLs~ 1329 (1349)
++-||..|++|+.||+|+|||..+.++++++. ..++|+-+.+
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 99999999999999999999999999999988 4666777765
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=2.7e-17 Score=183.79 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=187.9
Q ss_pred EEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC
Q 000694 1104 VWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS 1182 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~ 1182 (1349)
+..+.||.++|.|++=+|.. ..++||+.||.|++||+.+..+. ..+..|.+.|..+..+...+++++.|.+|+.|.++
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 55678999999999999987 77999999999999999876664 46678999999998777999999999999999998
Q ss_pred CcceeeccCCC-eEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 000694 1183 RTLKDIYRSKG-IKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 1259 (1349)
Q Consensus 1183 ~~~~~~~~~~~-V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD 1259 (1349)
+.......+.. +..+.. .++.++++| ..|.+||..... |...+......|.++.++|....+++++..|
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~------Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDN------PVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred CCcceeeeccccccccccccccccccccC--ceeeecccccCC------ccceeecCCCceeEEecCCCcchheeeeccC
Confidence 76555544443 555555 334455554 468999986543 3344566677899999999977777666679
Q ss_pred CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCC-CeEEEEEc--CCEEE
Q 000694 1260 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KVGRISAGS-KITSLLTA--NDIVL 1335 (1349)
Q Consensus 1260 gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~-~l~sl~~hs-~VtsLs~d--g~~La 1335 (1349)
+.|.+||.+++.+++... -+..-+.++|+|++-.+++|++|..++.||++..+ ++....+|. .|.++.|+ |+-++
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999999999988876654 34456789999988889999999999999988754 566666655 49999986 88999
Q ss_pred EEECCCcEEEeeC
Q 000694 1336 CGTETGLIKGWIP 1348 (1349)
Q Consensus 1336 SGS~DGtIrIWD~ 1348 (1349)
+||.|.+|+||..
T Consensus 289 sgsyDksIRIf~~ 301 (433)
T KOG0268|consen 289 SGSYDKSIRIFPV 301 (433)
T ss_pred cccccceEEEeec
Confidence 9999999999963
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.4e-16 Score=170.61 Aligned_cols=227 Identities=14% Similarity=0.218 Sum_probs=177.5
Q ss_pred ccCCCCEEEEEEcC-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 000694 1066 HKCSGAVTALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsd-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
..|..++.+++|.| ..+++|+-||.|+.+|++++.. ..+..|..+|.||.+++....+++||.|++|++||.+...
T Consensus 51 ~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 51 FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred eecCCceeeeeccCCceEEEeccCceEEEEEecCCcc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 46899999999965 5799999999999999999874 4556799999999999988899999999999999998643
Q ss_pred EEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeecc-----CCCeEEEEe-eCC-EEEEEeCCCcEEEEE
Q 000694 1145 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSV-VQG-KIYIGCMDSSIQELA 1217 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~-----~~~V~~La~-~dg-~LlSGs~DGsI~IWD 1217 (1349)
.. ........|.+++..++.+++|+.|..+.+||++.....+.. ...++|++. |++ -+++++-||.|.+=.
T Consensus 128 ~~--~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 128 VV--GTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cc--cccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 32 233444579999999999999999999999999853333321 122889987 643 466788999998766
Q ss_pred ccCCccccccccccccccC---------CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 000694 1218 VSNNVEREIKAPFKSWRLQ---------SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h---------~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf 1288 (1349)
+.+..... ...-.|+-| ..||++++|||-..++++++ .||.|.+||+.+.+.+..+..-...|.+++|
T Consensus 206 ~d~s~~~~--skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 206 FDDSEEAQ--SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred cCCchHHh--hhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 65541110 000112222 35899999999977777765 5889999999998888888877778999999
Q ss_pred ecCCCEEEEEeC
Q 000694 1289 VEDFIYLNYNSS 1300 (1349)
Q Consensus 1289 SPDg~~LaSGS~ 1300 (1349)
+.||..||.++.
T Consensus 283 s~dG~~LAia~s 294 (323)
T KOG1036|consen 283 SMDGSLLAIASS 294 (323)
T ss_pred ccCCCeEEEEec
Confidence 999999999873
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=4.1e-16 Score=194.16 Aligned_cols=243 Identities=17% Similarity=0.163 Sum_probs=185.3
Q ss_pred eecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCC----------C------ceeEEEEeccCCCcEEEEEEcCCCC
Q 000694 1063 EASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK----------Q------SAMLVWDVKEHRKAVTSFSLFEPGE 1124 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~t----------g------~~~~i~tL~gHss~VtsLafSpdg~ 1124 (1349)
.....|.+.|+|+.|+ || +||+||.|+.|.||+... | ....+..+.+|++.|..++|+|++.
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 4457899999999996 55 799999999999999872 0 1235678899999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC--cceeec---c----CCC
Q 000694 1125 SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIY---R----SKG 1193 (1349)
Q Consensus 1125 ~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~--~~~~~~---~----~~~ 1193 (1349)
+|+++|.|++|.+||..+.+.. ..+.+|...|.. |+|-|+++++-+.|++|++|+... ..+.+. . ...
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred EEEEecccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 9999999999999999998544 567788888887 568999999999999999999663 111111 1 112
Q ss_pred eEEEEe-eCCEEEEE-----eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC------c---------eE-
Q 000694 1194 IKSMSV-VQGKIYIG-----CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD------W---------LY- 1251 (1349)
Q Consensus 1194 V~~La~-~dg~LlSG-----s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd------~---------i~- 1251 (1349)
+..+.| |||+.++. +.-.++.|.+-.+-+. ...+-+|..++.++.|+|. . .|
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCcee------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 677778 99987642 1234566655533221 1245688899999999863 1 12
Q ss_pred EEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1252 SASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1252 las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
+++.++.|++|.||.....+++.... -....|.+++|+|||..|..+|.||+|.+......
T Consensus 296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 55666789999999987766554332 23568999999999999999999999999976543
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2e-15 Score=184.63 Aligned_cols=273 Identities=14% Similarity=0.182 Sum_probs=193.7
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
.+|+++-+.|+|. +| +|++++.||.|++|+..+..- .-.++.-|...|.+++- ++.+|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-EPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-CCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 5789999999994 44 899999999999999876521 12233337788888876 5558999999999999999887
Q ss_pred eEEEEEEecCCCCe--EEecCCCCEEEEEecCCeEEEEecCC-cceeeccC--CCeEEEEe-eCCEEEE-EeCCCcEEEE
Q 000694 1144 KLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRS--KGIKSMSV-VQGKIYI-GCMDSSIQEL 1216 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V--~sLs~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~--~~V~~La~-~dg~LlS-Gs~DGsI~IW 1216 (1349)
+.. ..+....-++ .++..+|+.++.|+.|-.|++.++.. .......+ ..|.++.+ |++.+++ .+.||.|++|
T Consensus 87 ~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred Ccc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 642 1222333344 45678889999999999999999874 22233333 34999999 8777664 7789999999
Q ss_pred EccCCccccccccc-cccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCC
Q 000694 1217 AVSNNVEREIKAPF-KSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDF 1292 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~l-k~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g--H~~~VtsLafSPDg 1292 (1349)
|+.++........+ +..... ...+..++|||++..++... -|+.|++|+..++.....+.. +...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99988544332111 111222 46678899999955544443 377999999999888777764 34459999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEe
Q 000694 1293 IYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d--g~~LaSGS~DGtIrIW 1346 (1349)
.|||+++.||.|.|||.++-+. -.....|.+++|. .+.+-.-...|+..+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999987211 1113348888874 3344444444444333
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.1e-15 Score=166.12 Aligned_cols=245 Identities=12% Similarity=0.220 Sum_probs=166.7
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECC--CCceeEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK--KQSAMLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~--tg~~~~i~tL~gHss~VtsLafSp--dg~~LaSGS~DGtIrVW 1138 (1349)
..+|.+-|+|+.|+ +.++|||+.|++|+|||.+ ++........+.|.+.|..|.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35899999999995 5589999999999999964 455666777899999999999974 47899999999999999
Q ss_pred EccCCeE--------EEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-eC--C-EEEE
Q 000694 1139 QMVQRKL--------ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQ--G-KIYI 1206 (1349)
Q Consensus 1139 Dl~tg~~--------~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~d--g-~LlS 1206 (1349)
.=..... .+..+..... .|..+.| |. | ++++
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~Dsrs-------------------------------------sV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRS-------------------------------------SVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred eecccccccccceeEEEEEeecCCc-------------------------------------ceeEEEecchhcceEEEE
Confidence 7421110 0111111222 2444455 21 2 3555
Q ss_pred EeCCCcEEEEEccCCcc-------ccccccccccccCCCCeEEEEEcCC---ceEEEEEecCC----CeEEEEECCCC--
Q 000694 1207 GCMDSSIQELAVSNNVE-------REIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEG----SNIKEWRRHRK-- 1270 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~-------~~i~~~lk~~~~h~~~I~sL~~~pd---~i~las~S~dD----gtIrIWDl~t~-- 1270 (1349)
++.||.+++|+.-+.-. .+++........+..+..++.+++. ...++.++.++ +.++||....+
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 66677777776543311 1111000011123466677888765 23444444221 36888876442
Q ss_pred --CeEEEecCCCCCeEEEEEecC----CCEEEEEeCCCcEEEEECCCC--------------------cEEEEEeCCC-C
Q 000694 1271 --PQISIAPEKGTTIQAMAVVED----FIYLNYNSSASSLQIWLRGTQ--------------------QKVGRISAGS-K 1323 (1349)
Q Consensus 1271 --~li~tl~gH~~~VtsLafSPD----g~~LaSGS~DGtVrVWDl~tg--------------------~~l~sl~~hs-~ 1323 (1349)
..+.++.+|+.+|++++|.|+ ...||+++.|| |+||+++.. +.+..+.+|. .
T Consensus 212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 346678899999999999995 45799999999 999987631 1334444555 6
Q ss_pred eEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1324 ITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1324 VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
|..+.|+ |.+|++.|.||.||+|.
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999997 99999999999999995
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.1e-16 Score=169.37 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=179.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe--EEEEEEecCCCCeEEec----CCCCEEEEEecCCeEEEEec
Q 000694 1108 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK--LELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1108 ~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~--~~~~~~~~h~~~V~sLs----~~g~~LvsgS~DgtIkVWDl 1181 (1349)
..|.+.|.++...-.|++|+|++.|++|+|+.++.+. .....+.+|.++|..+. ..|..+++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5699999999888899999999999999999998754 44567789999999865 36889999999999999998
Q ss_pred CCcc-----eeeccCCCeEEEEe-eCC---EEEEEeCCCcEEEEEccCC-ccccccccccccccCCCCeEEEEEcCCce-
Q 000694 1182 SRTL-----KDIYRSKGIKSMSV-VQG---KIYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKDWL- 1250 (1349)
Q Consensus 1182 ~~~~-----~~~~~~~~V~~La~-~dg---~LlSGs~DGsI~IWDl~t~-~~~~i~~~lk~~~~h~~~I~sL~~~pd~i- 1250 (1349)
.+.. ....+...|+++++ |.+ .|++++.||.|.+.+.++. ... ..+....|...++++.+.|...
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~----t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT----TSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc----chhhhhccccccceeeecCcCCC
Confidence 7431 11122334999999 654 3667999999999998765 211 1134466888899998887621
Q ss_pred -------------EEEEEecCCCeEEEEECCCC--CeEEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCC
Q 000694 1251 -------------YSASSSVEGSNIKEWRRHRK--PQISIAPEKGTTIQAMAVVEDF----IYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1251 -------------~las~S~dDgtIrIWDl~t~--~li~tl~gH~~~VtsLafSPDg----~~LaSGS~DGtVrVWDl~t 1311 (1349)
.+++++ .|+.|+||+...+ ..-.++.+|.+.|+.++|.|.- .+||++|.||+|.||....
T Consensus 164 g~~~~~~~~~~~krlvSgG-cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGG-CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccccccCcccccceeeccC-CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 234443 5789999999774 3445689999999999999954 5899999999999995442
Q ss_pred --CcEEEEEeC--CCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1312 --QQKVGRISA--GSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1312 --g~~l~sl~~--hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
.+-..++-. ...+..++|+ |+.|++++.|+.|.+|.+
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 222222222 3457888875 999999999999999953
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.3e-16 Score=176.53 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=187.7
Q ss_pred EEECC-CcEEEEECCCCceeEEEEeccC-CCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCeEEEEEEecCCCCeEEe
Q 000694 1084 SGFSD-GSIKMWDIKKQSAMLVWDVKEH-RKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRKLELIEVIATKEPIRKL 1160 (1349)
Q Consensus 1084 SGS~D-GtIrVWDl~tg~~~~i~tL~gH-ss~VtsLafSpdg~~LaSGS~-DGtIrVWDl~tg~~~~~~~~~h~~~V~sL 1160 (1349)
+++.| .++.+||+++|.. ..++++. ...-.++..- .+.+++++.. -..+.+|.+....... ...-..++|.++
T Consensus 12 ssS~d~~~~~~~dl~TGt~--~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al 87 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTS--LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHAL 87 (476)
T ss_pred ccCCCCcceeEEecCCCce--eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeee
Confidence 34444 4599999999875 5566654 2111122211 2356665543 4578899986544332 233446678886
Q ss_pred c--CCCCEEEEEecCCeEEEEecC-CcceeeccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEccCCc---cccccccc
Q 000694 1161 D--TYGKTIFASTQGHRMKVIDSS-RTLKDIYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAVSNNV---EREIKAPF 1230 (1349)
Q Consensus 1161 s--~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~---~~~i~~~l 1230 (1349)
. +.|.+++.|+..|.|++|.+. |....+...| .|+|+.| .+..+++|+.||.|.+|++.+-. ......+.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 5 778888888899999999998 4555555444 3999999 44568899999999999986531 11134567
Q ss_pred cccccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1231 KSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd~--i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
..|..|.-+|+.+.+.+++ ..+.+. +.|.++++||+..+.++.++. ....+.+++.+|-+..+..|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 8899999999999988774 233443 468999999999998888776 456799999999999999999999999987
Q ss_pred CCCCc----------------EEEEEeCCC---CeEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1309 RGTQQ----------------KVGRISAGS---KITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1309 l~tg~----------------~l~sl~~hs---~VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+.... .+..+.+|. .|+|++. ||..|++|+.||+|+|||+
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 54332 334444433 5988875 7999999999999999996
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=4e-16 Score=179.26 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=207.4
Q ss_pred ccCCCCEEEEEEcC-C-EEEEEECCCcEEEEECCCCc-eeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1066 HKCSGAVTALIYYK-G-LLCSGFSDGSIKMWDIKKQS-AMLVWDVK--EHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsd-g-~LaSGS~DGtIrVWDl~tg~-~~~i~tL~--gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
-.|..-|.++++++ . +++||+. |-|+|||+.... ..++..+. .-...|.++...|||+.|++||.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36888888888863 3 6888876 668999997532 12233332 24568999999999999999999999999999
Q ss_pred cCCeEEEEEEe-cCCCCeE--EecCCCCEEEEEecCCeEEEEecCCc-ceeeccCC--CeEEEEe-eCC-EEEEEeCCCc
Q 000694 1141 VQRKLELIEVI-ATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRT-LKDIYRSK--GIKSMSV-VQG-KIYIGCMDSS 1212 (1349)
Q Consensus 1141 ~tg~~~~~~~~-~h~~~V~--sLs~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~~~--~V~~La~-~dg-~LlSGs~DGs 1212 (1349)
........... ...-... .++++.+..+++..||.|.|||+..+ ....+.++ ++.|+.+ .+| ++++|+-|++
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 77543221111 1111122 25689999999999999999999854 33444444 4999999 444 7889999999
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1292 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg 1292 (1349)
|+.||++++....- ......|.++...|.+-+++.+- +.+.+.+.... +.....+.-|.+-|.++.|.+.|
T Consensus 575 vRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred eeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeec-ccCcEEEEecC-CccceeecccccEEEEEEecccC
Confidence 99999999842211 11246788999999988888754 56667766654 44556677799999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEEeeC
Q 000694 1293 IYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs--~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+++++.|.|..+..|...-|..++..+..+.|++.. +|.+++++|+.|....||..
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999999998888887665 57889999999988888864
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=8.2e-16 Score=181.68 Aligned_cols=266 Identities=16% Similarity=0.134 Sum_probs=189.7
Q ss_pred EEEEEECCCcEEEEECCCCcee----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE-EEecCCC
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKE 1155 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~----~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~-~~~~h~~ 1155 (1349)
.|+.+..||.|.++|....... .+..+..|...|..+.|.|....|++++.|.++++||+.++++... ...+|..
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 5999999999999999875442 1345578999999999999667899999999999999999877644 3568888
Q ss_pred CeEEec---CCCCEEEEEecCCeEEEEecCCcc---------------ee-----------ec----cCC----CeEEEE
Q 000694 1156 PIRKLD---TYGKTIFASTQGHRMKVIDSSRTL---------------KD-----------IY----RSK----GIKSMS 1198 (1349)
Q Consensus 1156 ~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~---------------~~-----------~~----~~~----~V~~La 1198 (1349)
.|.++. .+...+++|+.||.|.|||++-.. .. +. ... .|+.+.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 888744 566788999999999999986111 00 00 001 155666
Q ss_pred e-eCCEEEEEeC-CCcEEEEEccCCccccccccccc--cccC---CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--
Q 000694 1199 V-VQGKIYIGCM-DSSIQELAVSNNVEREIKAPFKS--WRLQ---SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-- 1269 (1349)
Q Consensus 1199 ~-~dg~LlSGs~-DGsI~IWDl~t~~~~~i~~~lk~--~~~h---~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-- 1269 (1349)
| .+..|++++. |+.|++||++......-+.+... +..+ ...+.++.....+.++.+.. .|+.|+.||+.+
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLS 304 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccC
Confidence 6 6667887555 99999999987643222222111 1112 34566667666666666544 388999999865
Q ss_pred CCeEEEecCCCC---CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCC-eEEEEEcC---CEEEEEECCC
Q 000694 1270 KPQISIAPEKGT---TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAGSK-ITSLLTAN---DIVLCGTETG 1341 (1349)
Q Consensus 1270 ~~li~tl~gH~~---~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~-l~sl~~hs~-VtsLs~dg---~~LaSGS~DG 1341 (1349)
..++..+.++.. .|. -..+||+.++++|+.|+..++|.+.+.+. ...+.+|.. |+++.|.+ .-++++++|-
T Consensus 305 ~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred cCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 344555555432 222 23589999999999999999999887654 344556665 99999852 2566679999
Q ss_pred cEEEeeC
Q 000694 1342 LIKGWIP 1348 (1349)
Q Consensus 1342 tIrIWD~ 1348 (1349)
+++||+.
T Consensus 384 ~~kiW~l 390 (720)
T KOG0321|consen 384 RVKIWRL 390 (720)
T ss_pred ceEEEec
Confidence 9999985
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.9e-16 Score=173.72 Aligned_cols=248 Identities=16% Similarity=0.177 Sum_probs=178.3
Q ss_pred eeeecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeE-EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 000694 1061 ILEASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAML-VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~-i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrV 1137 (1349)
++.++-.|.++|+++.|++ ..|++|+.|++|++||......+. .+.|+ ...+|.++.|+|.|.+|+.|..-.++++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeE
Confidence 3466778999999999974 379999999999999997643211 12233 4578999999999999999999999999
Q ss_pred EEccCCeEEEEEE--ecCCCCeEEe--cCCCCEEEEEecCCeEEEEecC--CcceeeccCC---CeEEEEe-eCC-EEEE
Q 000694 1138 WQMVQRKLELIEV--IATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK---GIKSMSV-VQG-KIYI 1206 (1349)
Q Consensus 1138 WDl~tg~~~~~~~--~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~--~~~~~~~~~~---~V~~La~-~dg-~LlS 1206 (1349)
||+++-++..... ..|.+.|+++ +..++..++++.||.|++||-- ++...+...| .|.+..| .+| ++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 9999987754332 2577888885 4889999999999999999965 3333343333 3888888 555 4667
Q ss_pred EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEE
Q 000694 1207 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQA 1285 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl-~gH~~~Vts 1285 (1349)
.+.|..+++|.+.+++.......... .+....-+...|+...-|++.-.-..+.+.-||.++...+..+ .+|.+.++.
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~-tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGT-TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCc-ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 88999999999999864432111100 0000001112233333343332222357899999886555444 489999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1286 MAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1286 LafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
+.-||.+.-+.+||.|..+++|-.+
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999644
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.1e-15 Score=164.88 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=184.4
Q ss_pred EEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1072 VTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1072 Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
..|+.|+ +.+||+|+.||.|.|||+.+... -+.+.+|..+|++++|+++|+.|+|+|.|..|.+||+..|.+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 7899996 44899999999999999999664 6678999999999999999999999999999999999999875433
Q ss_pred EecCCCCeEE--ecCCC-CEEEEEecCCeEEEEecCCcceeeccCCC-------eEEEEe--eCCEEEEEeCCCcEEEEE
Q 000694 1150 VIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRTLKDIYRSKG-------IKSMSV--VQGKIYIGCMDSSIQELA 1217 (1349)
Q Consensus 1150 ~~~h~~~V~s--Ls~~g-~~LvsgS~DgtIkVWDl~~~~~~~~~~~~-------V~~La~--~dg~LlSGs~DGsI~IWD 1217 (1349)
....+|.. +.+.. +..++.-.+..-.+-++............ -.+..| .+.++++|...|.+.++|
T Consensus 104 --rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 --RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred --EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 44566665 44433 33333333333444444422211111110 122234 344678899999999999
Q ss_pred ccCCccccccccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-------CCeE--EEecC--CCCCeEE
Q 000694 1218 VSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-------KPQI--SIAPE--KGTTIQA 1285 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-------~~li--~tl~g--H~~~Vts 1285 (1349)
..+.+... .++.. .+.|..+.+...+.+++..+ .|+.|+.|++.. +.+. +.+.. ....-.+
T Consensus 182 a~t~e~va------s~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 182 AETLECVA------SFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred cchheeee------eeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 98874321 11222 36788888888777766543 588999999752 1111 11111 1123457
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCC--CeEEEEEcCC--EEEEEECCCcEEEeeC
Q 000694 1286 MAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGS--KITSLLTAND--IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1286 LafSPDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~~hs--~VtsLs~dg~--~LaSGS~DGtIrIWD~ 1348 (1349)
++|+.+|.|++.|+ .-..++||....|..++.+.|.. ....+.|++- .+++- ..|+|+||..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 88999999998877 45779999999999999999843 3788889854 34444 7899999974
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-14 Score=153.43 Aligned_cols=237 Identities=15% Similarity=0.175 Sum_probs=184.5
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCcee---EEEEeccCCCcEEEEEEcCC----CCEEEEEe-CCCeE
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFEP----GESLLSGS-ADKTI 1135 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~---~i~tL~gHss~VtsLafSpd----g~~LaSGS-~DGtI 1135 (1349)
..|.+.|.|.+|+ .| .+++|+.|.+|++.-.+...+. .-..|.-|.+.|..++|-.+ |..|++++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 5799999999996 44 7999999999999877653332 12356779999999999643 35667654 46677
Q ss_pred EEEEccCCeEEEEEEecCCCCeEEe-cCCCCEEEEEecCCeEEEEecCC-----cceeeccC-----CCeEEEEe-eCCE
Q 000694 1136 GVWQMVQRKLELIEVIATKEPIRKL-DTYGKTIFASTQGHRMKVIDSSR-----TLKDIYRS-----KGIKSMSV-VQGK 1203 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~V~sL-s~~g~~LvsgS~DgtIkVWDl~~-----~~~~~~~~-----~~V~~La~-~dg~ 1203 (1349)
.+-|..+|+.. ....+|.+.|.++ ++++..+++|++|.+|++||++- .....++. ..|..+++ |.|+
T Consensus 166 y~tdc~~g~~~-~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 166 YITDCGRGQGF-HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEeecCCCCcc-eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 77787777764 3556788888884 68999999999999999999972 11122222 22788888 7787
Q ss_pred EE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEecC
Q 000694 1204 IY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPE 1278 (1349)
Q Consensus 1204 Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~----~li~tl~g 1278 (1349)
++ +|-.|....+||++.++.. +.+..|...|.++.|+|...|+++++. |..|++-|++.. -++.....
T Consensus 245 ll~sg~~dssc~lydirg~r~i------q~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMI------QRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred eeeeccCCCceEEEEeeCCcee------eeeCCCccceeEEEeCCCceEEEEecc-cceEEEeecccchhhcCceEEEEe
Confidence 66 5888999999999998633 456788999999999999999999875 668999998652 23445567
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88999999999999999999999999999653
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=2.9e-15 Score=171.99 Aligned_cols=279 Identities=15% Similarity=0.175 Sum_probs=198.7
Q ss_pred ccCCCCEEEEEEcC----CEEEEEECCCcEEEEECCCCc--eeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 000694 1066 HKCSGAVTALIYYK----GLLCSGFSDGSIKMWDIKKQS--AMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsd----g~LaSGS~DGtIrVWDl~tg~--~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVW 1138 (1349)
.-|.+.|++++|++ ..+|+|+.-|+|-+||+.+.+ ..-+..+..|.++|.++.|+|.+ ..+++.|.||+|+.-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 45789999999963 369999999999999996322 22356678899999999999976 579999999999999
Q ss_pred EccCCeEEEEEEec-CCCCeEE--ecCCCCEEEEEecCCeEEEEecCCccee----eccCCCeEEEEe-e--CCEEEEEe
Q 000694 1139 QMVQRKLELIEVIA-TKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD----IYRSKGIKSMSV-V--QGKIYIGC 1208 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~-h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~----~~~~~~V~~La~-~--dg~LlSGs 1208 (1349)
|++++......... ....+.+ +......+++++.=|.+.+||.+..... ..+...|..+++ | .-.+++++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 99876532111111 1112223 3456667777777779999999843221 223345999998 3 34577899
Q ss_pred CCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEecCC---CC
Q 000694 1209 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPEK---GT 1281 (1349)
Q Consensus 1209 ~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~----t~~li~tl~gH---~~ 1281 (1349)
.|++++|||++....+.- |.-.-..|...|.+..|+|.+..+++.+ .|..|+|||.. .-.+..++... ..
T Consensus 343 ~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred cCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeec-cCCceEEeecccccccCCccceeeccCcccc
Confidence 999999999987643221 1122245788999999999988777665 57799999983 33333333311 11
Q ss_pred --CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEEE-Ec--CC-EEEEEECCCcEEEee
Q 000694 1282 --TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLL-TA--ND-IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1282 --~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs--~VtsLs-~d--g~-~LaSGS~DGtIrIWD 1347 (1349)
......|.|+..++++|..-..|-|+|-..++.+..+.... .|.++- |+ ++ .++.|+..|.|+||.
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 23456799999999999999999999999999888877533 354442 44 55 555666789999985
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.4e-15 Score=174.28 Aligned_cols=228 Identities=15% Similarity=0.204 Sum_probs=162.3
Q ss_pred EEEEEECCCcEEEEECCCCc-eeEEE------------------EeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEc
Q 000694 1081 LLCSGFSDGSIKMWDIKKQS-AMLVW------------------DVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~-~~~i~------------------tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl 1140 (1349)
++|.|+.|..|.|||+.-.. ..+.. .-.+|+..|.+++|+..- ..|+|||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 89999999999999985211 00111 123799999999998655 56889999999999999
Q ss_pred cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccC
Q 000694 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
.+|++.. ....|...|+++.++.. ....+++|+.|++|.+.|.+.
T Consensus 274 ~~g~p~~-s~~~~~k~Vq~l~wh~~----------------------------------~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 274 DTGKPKS-SITHHGKKVQTLEWHPY----------------------------------EPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred CCCCcce-ehhhcCCceeEEEecCC----------------------------------CceEEEeccccceEEeeeccC
Confidence 9998853 33456666666542211 122355666666666666664
Q ss_pred CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecC-CCEEEEE
Q 000694 1221 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVED-FIYLNYN 1298 (1349)
Q Consensus 1221 ~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPD-g~~LaSG 1298 (1349)
.... .+.|... ..|-.+.|++.....+-.+.+||+++-+|++. ++++.++..|.++|.++++++. ..+++|+
T Consensus 319 ~~~s-----~~~wk~~-g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNS-----GKEWKFD-GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred cccc-----CceEEec-cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence 2111 1233333 45778888888766666667899999999977 6999999999999999999974 4578999
Q ss_pred eCCCcEEEEECCCCcEEEEEeCC---CCeEEEEEcC---CEEEEEECCCcEEEeeCC
Q 000694 1299 SSASSLQIWLRGTQQKVGRISAG---SKITSLLTAN---DIVLCGTETGLIKGWIPL 1349 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~h---s~VtsLs~dg---~~LaSGS~DGtIrIWD~L 1349 (1349)
+.|+.|++|++....+-....+. ++..|+++++ -+++.||..+.++|||..
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 99999999987655443332221 2245666654 389999999999999963
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.67 E-value=9.2e-14 Score=160.74 Aligned_cols=283 Identities=12% Similarity=0.143 Sum_probs=204.9
Q ss_pred CceEEEEEeeeeeecccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCCCceeEE-EEeccC-CCcEEEEEEcCCCCEE
Q 000694 1051 ISRISCVHTQILEASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLV-WDVKEH-RKAVTSFSLFEPGESL 1126 (1349)
Q Consensus 1051 ~~~w~~~~t~tl~~~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i-~tL~gH-ss~VtsLafSpdg~~L 1126 (1349)
.+.|+|........-..-+..|....|++ .-++.....|.+..|+.+++..... ..|.++ +..|.|++|.++|+ +
T Consensus 182 lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-v 260 (626)
T KOG2106|consen 182 LSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-V 260 (626)
T ss_pred cchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-E
Confidence 35677655544333334466778888852 2344445568899999998765322 234333 36899999999997 7
Q ss_pred EEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecC-Ccce--eec-cCCCeEEEEeeC
Q 000694 1127 LSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS-RTLK--DIY-RSKGIKSMSVVQ 1201 (1349)
Q Consensus 1127 aSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~-~~~~--~~~-~~~~V~~La~~d 1201 (1349)
+||..+|+|.||+..+.+...... .|.+.|.++. .....+++|+.|..|..||-+ +... ... ....|+.+.-..
T Consensus 261 iTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 261 ITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred EeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence 899999999999997777665555 9999999976 455567779999999999944 1111 111 122367666644
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 000694 1202 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1281 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~ 1281 (1349)
+.++.|...+.|-.=.+.++-.. ...+|+.....++.||+...+++++ .|+.+++|+ ..++..+.. -..
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~-------~v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~~wt~~-~~d 408 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTL-------TVQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKLEWTKI-IED 408 (626)
T ss_pred CcEEEeeccceEEEeeecCCceE-------EEEecccceeeEEcCCChhheeecc-CcceEEEcc--CCceeEEEE-ecC
Confidence 45888888888876666655322 2367888899999999987777665 688999999 333433322 356
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEee
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS~DGtIrIWD 1347 (1349)
++.++.|+|.| .+|.|...|...|.|.++...+..-....+++++.+ +|.+||.|+.|+.|+||-
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 78899999999 999999999999999999666655555666888876 588999999999999984
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=177.89 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=175.0
Q ss_pred cccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcc
Q 000694 1065 SHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~ 1141 (1349)
...|.+.|..+.|-+| .|++++.|.++++||+++.+..-...+.||.+.|.+++|.|.+. .+++|+.||.|.|||++
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 4579999999999545 69999999999999999987755555899999999999999875 57899999999999986
Q ss_pred CCeEE---------E---E--------------EEecCCCCeEE-----ecCCCCEEEEEec-CCeEEEEecCCcce---
Q 000694 1142 QRKLE---------L---I--------------EVIATKEPIRK-----LDTYGKTIFASTQ-GHRMKVIDSSRTLK--- 1186 (1349)
Q Consensus 1142 tg~~~---------~---~--------------~~~~h~~~V~s-----Ls~~g~~LvsgS~-DgtIkVWDl~~~~~--- 1186 (1349)
..... . . ....+...|.+ +..+...+++++. |+.|+|||++....
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 43210 0 0 00112222332 3367788888877 99999999983211
Q ss_pred -------eec-c---CCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCC--CCeEEEEEcCCceE
Q 000694 1187 -------DIY-R---SKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS--KPINSLVVYKDWLY 1251 (1349)
Q Consensus 1187 -------~~~-~---~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~--~~I~sL~~~pd~i~ 1251 (1349)
.+. . ..++.++.. .+.++++.|.|++|++||+.+...... ..+.++. ..-..-..+|++.+
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhccCcccceeeeeeecCCCCce
Confidence 111 1 223666666 457888888999999999987643222 2223321 11122245688888
Q ss_pred EEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC
Q 000694 1252 SASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1252 las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg-~~LaSGS~DGtVrVWDl~tg 1312 (1349)
+++++. |...++|.+.+ ......+.||...|++++|.|.. .-+++++.|.+++||++..+
T Consensus 332 l~SgSs-d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSS-DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCC-CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 888764 66899999977 45567788999999999998733 34677799999999997654
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.1e-15 Score=183.75 Aligned_cols=228 Identities=9% Similarity=0.140 Sum_probs=167.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE--EEEEEecCC-CCeE---Ee---cCCCCEEEEEecCCeEEEEecCCc
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKL--ELIEVIATK-EPIR---KL---DTYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~--~~~~~~~h~-~~V~---sL---s~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
...|...++-..++.+|. ..++++.+..... .+....+.+ ..-. .+ ..+.+.|++++..|.|.+||++..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 455566677777777764 4567777654321 111111111 1111 12 256788999999999999999862
Q ss_pred ----ceeeccCC--CeEEEEe---eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1185 ----LKDIYRSK--GIKSMSV---VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1185 ----~~~~~~~~--~V~~La~---~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
....+..| .+.++.| ....+++|+.||+|++||++..... ..+.+....|+.+.|+|...+.++.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~------~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK------STFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc------ccccccchhhhceeeccCCCceEEE
Confidence 11233333 4999998 4467889999999999999987533 2345577889999999886666666
Q ss_pred ecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCeEEEEEcC-
Q 000694 1256 SVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ--KVGRISAGSKITSLLTAN- 1331 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~--~l~sl~~hs~VtsLs~dg- 1331 (1349)
..++|.+++||++. .++...+.+|.++|.++.|+|++.+|||||.|++|+|||..+++ .+.++....+|.++.|-+
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 66899999999965 67788899999999999999999999999999999999988654 556666677899999964
Q ss_pred --CEEEEEEC--CCcEEEeeC
Q 000694 1332 --DIVLCGTE--TGLIKGWIP 1348 (1349)
Q Consensus 1332 --~~LaSGS~--DGtIrIWD~ 1348 (1349)
..|++++. |-.|+|||.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ccchhhhhhccccceEEEEee
Confidence 37777664 778999995
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=1.9e-15 Score=179.03 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=189.3
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEEc
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP---GESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpd---g~~LaSGS~DGtIrVWDl 1140 (1349)
.+....|+|++++ +| +||+|..-|+++||++..-+. ...+.+|.+.|.|+.|+.. .++|++++.|..|.|+|+
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 3456789999996 45 699999999999999987554 5667899999999999842 367999999999999999
Q ss_pred cCCeEEEEEEecCCCCeEEec--CCC--CEEEEEecCCeEEEEecC--Ccceeecc------CCCeEEEEe-eC-CEEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLD--TYG--KTIFASTQGHRMKVIDSS--RTLKDIYR------SKGIKSMSV-VQ-GKIYI 1206 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs--~~g--~~LvsgS~DgtIkVWDl~--~~~~~~~~------~~~V~~La~-~d-g~LlS 1206 (1349)
...-.....+.+|...|+++. ..| ..+++++.|..|.+--.. +....+.. ...+..+++ |. +.+++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 876666667778999999854 333 578888888877543332 11111111 223788888 54 56778
Q ss_pred EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE
Q 000694 1207 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM 1286 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsL 1286 (1349)
+|.|..|++||+..++..+.... -..|.+..-.+...|.++|+++.. .|+++.++|.-+|+++....||...|+++
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EecccceEEEeccccceeeeecc---cccCCCceEEEEECCCccEEEEee-cCCceEEEEeccchhhhhhcCcchheeee
Confidence 99999999999999865433221 133555666788899999998754 58899999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCC
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~t 1311 (1349)
.|.+|.+.|++.+.||.|.||.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 9999999999999999999998653
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=1.9e-14 Score=157.38 Aligned_cols=278 Identities=19% Similarity=0.220 Sum_probs=195.1
Q ss_pred ccCCCCEEEEEEc--CC-EEEEEECCCcEEEEECCCCc--------eeEEE-----EeccCCCcEEEEEEcCCC-CEEEE
Q 000694 1066 HKCSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQS--------AMLVW-----DVKEHRKAVTSFSLFEPG-ESLLS 1128 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs--dg-~LaSGS~DGtIrVWDl~tg~--------~~~i~-----tL~gHss~VtsLafSpdg-~~LaS 1128 (1349)
..|.+.|+++.+. .| ++++|+.||.|.|||+++.. +..+. .-.+|+-.|.++.|-|-. ..+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999995 34 79999999999999997532 00111 124788899999999855 56778
Q ss_pred EeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ec---CCCCEEEEEecCCeEEEEecC-CcceeeccCCC--eEEEEe-
Q 000694 1129 GSADKTIGVWQMVQRKLELIEVIATKEPIRK--LD---TYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG--IKSMSV- 1199 (1349)
Q Consensus 1129 GS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls---~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~--V~~La~- 1199 (1349)
++.|.+++|||.++-+....+ ...+.|.+ ++ ...-.+++|..|-.|++.|+. +.......+|. |.++.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 999999999999887654322 33444554 33 234467778888899999998 55556665554 888888
Q ss_pred eCCE--EEEEeCCCcEEEEEccCC--cccc------cccc-ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1200 VQGK--IYIGCMDSSIQELAVSNN--VERE------IKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1200 ~dg~--LlSGs~DGsI~IWDl~t~--~~~~------i~~~-lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
|... +++|+.||.|++||++.. .... .+++ .+.-..|...+..+++..++.++++.+. |..+++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-d~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-DDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-ccceEEeecc
Confidence 5443 557999999999999754 2111 1112 1222356788999999999988887765 5589999987
Q ss_pred CCCeEEE-ec--CCCC----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEE
Q 000694 1269 RKPQISI-AP--EKGT----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGT 1338 (1349)
Q Consensus 1269 t~~li~t-l~--gH~~----~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg~--~LaSGS 1338 (1349)
+|+.... +. .|.. .+. +. +-+...++---.|+.+.++++..|..+..+.+|.+ |.|-.+.++ ...+|+
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 6543211 10 0111 111 22 23334444444568999999999999999998876 777777665 789999
Q ss_pred CCCcEEEeeC
Q 000694 1339 ETGLIKGWIP 1348 (1349)
Q Consensus 1339 ~DGtIrIWD~ 1348 (1349)
.||.|..|.|
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999976
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.1e-15 Score=181.39 Aligned_cols=268 Identities=13% Similarity=0.125 Sum_probs=189.4
Q ss_pred CCEEEEEEcCC--EEEEEECCCcEEEEECCCCce--eEEEEeccCC---CcEEEEEEcC-CCCEEEEEeCCCeEEEEEcc
Q 000694 1070 GAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSA--MLVWDVKEHR---KAVTSFSLFE-PGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1070 ~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~--~~i~tL~gHs---s~VtsLafSp-dg~~LaSGS~DGtIrVWDl~ 1141 (1349)
+...+|....+ .++.+|. ..++||.+..... .+...+++-. -.+..|.|.. +.++|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34556666433 4555543 3566776654221 1122222111 2455677863 44789999999999999997
Q ss_pred C--CeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCc-ceeecc--CCCeEEEEe---eCCEEEEEeCC
Q 000694 1142 Q--RKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT-LKDIYR--SKGIKSMSV---VQGKIYIGCMD 1210 (1349)
Q Consensus 1142 t--g~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~--~~~V~~La~---~dg~LlSGs~D 1210 (1349)
. .+.....+..|...+.++. ...+.+++|++||.|++||++.. ....+. ...|+.+.| ++.+++++.+.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 6 2222234567888888865 46789999999999999999842 222222 234899998 56678899999
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEe
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVV 1289 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g-H~~~VtsLafS 1289 (1349)
|.+++||++....- .+.+..|.+++.++.+||++.++++++ .|+.|+|||..+.+......- ...+|..+.|-
T Consensus 199 G~lqlWDlRqp~r~-----~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRC-----EKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred ceEEEeeccCchhH-----HHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 99999999987422 235578999999999999999999987 688999999976544333222 35689999999
Q ss_pred cCCCE-EEEEe--CCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEcC---CEEEEEECCCcEE
Q 000694 1290 EDFIY-LNYNS--SASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTAN---DIVLCGTETGLIK 1344 (1349)
Q Consensus 1290 PDg~~-LaSGS--~DGtVrVWDl~tg~-~l~sl~~hs~-VtsLs~dg---~~LaSGS~DGtIr 1344 (1349)
|+..+ |++++ .|-.|+|||++..- +..++..|.. ++.++|++ ..+.+++.||+|.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 97765 66665 68899999987643 4566666665 78899963 4889999999874
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.3e-16 Score=190.22 Aligned_cols=228 Identities=19% Similarity=0.261 Sum_probs=189.4
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
+..|...|.|+..- ...+++|+.|..+-+|.+..... +..+.+|.++|.++.|+++...|++|+.||+|++||+..
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45788889988872 34699999999999999976544 667899999999999999999999999999999999998
Q ss_pred CeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-eCCEEE-EEeCCCcEEE
Q 000694 1143 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-VQGKIY-IGCMDSSIQE 1215 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~dg~Ll-SGs~DGsI~I 1215 (1349)
++.+. .+.+|...+.+ |.|.+.+.+.|+.|+.+++||.+. .....+.++. +.++.+ |+|.++ .|+.|.++++
T Consensus 102 Ak~vr-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 102 AKIVR-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhh-hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 87664 55567776666 568888889999999999999983 4444444433 788888 999655 5888999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~L 1295 (1349)
||...|+.. +.|..|...+.++.+||.......++ .|+++++||+++.+.+.........|.+.+|+|++..+
T Consensus 181 ~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 181 WDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred ecccccccc------cccccccccccccccCchhhhhccCC-CCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 999988643 45677889999999999988777665 58899999999998988888888899999999999999
Q ss_pred EEEeCCC
Q 000694 1296 NYNSSAS 1302 (1349)
Q Consensus 1296 aSGS~DG 1302 (1349)
++|..+.
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 9986543
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.65 E-value=3.7e-15 Score=171.59 Aligned_cols=214 Identities=7% Similarity=0.081 Sum_probs=161.1
Q ss_pred cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecC-CeEEEEecCCcce
Q 000694 1109 EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG-HRMKVIDSSRTLK 1186 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~-LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~D-gtIkVWDl~~~~~ 1186 (1349)
.|.+.|+.+.+-|.... +++++..+.|.|||..+..-... ... ....+..+.|-.+ |.=..|+..
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~--------~~~-~~~Pdl~L~gH~~eg~glsWn~~---- 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK--------ASG-ECRPDLRLKGHEKEGYGLSWNRQ---- 188 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc--------ccc-cCCCceEEEeecccccccccccc----
Confidence 48899999999887754 55778889999999744211100 000 1122223333222 222223321
Q ss_pred eeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcc-ccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 000694 1187 DIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW 1265 (1349)
Q Consensus 1187 ~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~-~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIW 1265 (1349)
..|.+++|+.|++|.+||+..... ..+..+...+.+|...|..++||+-...++++..+|+.+.||
T Consensus 189 -------------~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 189 -------------QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred -------------cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence 568899999999999999987643 344456667889999999999998876666666689999999
Q ss_pred ECC--CCCeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEcCC---EEEEE
Q 000694 1266 RRH--RKPQISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTAND---IVLCG 1337 (1349)
Q Consensus 1266 Dl~--t~~li~tl~gH~~~VtsLafSP-Dg~~LaSGS~DGtVrVWDl~tg~-~l~sl~~hs~-VtsLs~dg~---~LaSG 1337 (1349)
|++ +.++.....+|.+.|++++|+| ++..|||||.|++|++||+++.. ++.++.+|.. |.++.|++. .|+++
T Consensus 256 D~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 256 DTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred EcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 999 5677788889999999999999 56678999999999999988754 6788887765 999999854 99999
Q ss_pred ECCCcEEEeeC
Q 000694 1338 TETGLIKGWIP 1348 (1349)
Q Consensus 1338 S~DGtIrIWD~ 1348 (1349)
+.||++.|||.
T Consensus 336 g~D~rl~vWDl 346 (422)
T KOG0264|consen 336 GTDRRLNVWDL 346 (422)
T ss_pred ccCCcEEEEec
Confidence 99999999996
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.65 E-value=6.9e-15 Score=165.48 Aligned_cols=240 Identities=11% Similarity=0.156 Sum_probs=174.5
Q ss_pred ccCCCCEEEEEEc---CC-EEEEEECCCcEEEEECCC--------------CceeEEEEeccCCCcEEEEEEcCCC-CEE
Q 000694 1066 HKCSGAVTALIYY---KG-LLCSGFSDGSIKMWDIKK--------------QSAMLVWDVKEHRKAVTSFSLFEPG-ESL 1126 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs---dg-~LaSGS~DGtIrVWDl~t--------------g~~~~i~tL~gHss~VtsLafSpdg-~~L 1126 (1349)
-+|.+.|+-+... +. +.++-+..|.|.|||+.. .+..++.++.+|.+.=..++|||-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566666666653 33 577888899999999842 2345688999999999999999943 248
Q ss_pred EEEeCCCeEEEEEccCCeEEEEE--EecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe---eC
Q 000694 1127 LSGSADKTIGVWQMVQRKLELIE--VIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV---VQ 1201 (1349)
Q Consensus 1127 aSGS~DGtIrVWDl~tg~~~~~~--~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~---~d 1201 (1349)
+||..-+.|++|...+|...... +.+|.. .|..+.+ .+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-------------------------------------SVEDLqWSptE~ 270 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-------------------------------------SVEDLQWSPTED 270 (440)
T ss_pred ccCccccceEeeeeccCceeecCcccccccc-------------------------------------chhhhccCCccC
Confidence 88888899999998887653211 112222 2444454 45
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeEEEecC
Q 000694 1202 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQISIAPE 1278 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t---~~li~tl~g 1278 (1349)
+.+++|+.||+|+|||++.+..... -....|+.-|+.|.|+....++++ +.+||+++|||++. ++++..|+.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLas-G~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLAS-GGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeee-cCCCceEEEEEhhhccCCCcceeEEe
Confidence 6677888899999999988742211 122678889999999988775555 45899999999865 788999999
Q ss_pred CCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc-------------------EEEEEeCCCCeEEEEEc---CCEEE
Q 000694 1279 KGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQ-------------------KVGRISAGSKITSLLTA---NDIVL 1335 (1349)
Q Consensus 1279 H~~~VtsLafSPD-g~~LaSGS~DGtVrVWDl~tg~-------------------~l~sl~~hs~VtsLs~d---g~~La 1335 (1349)
|..+|+++.|+|. ...|+++|.|.+|.+||+..-. .++.-.+...|..+.|. +.+++
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 9999999999984 5678888899999999864211 12222233348888886 55999
Q ss_pred EEECCCcEEEeeC
Q 000694 1336 CGTETGLIKGWIP 1348 (1349)
Q Consensus 1336 SGS~DGtIrIWD~ 1348 (1349)
+.+.|| +.||-+
T Consensus 426 sTa~dG-fnVfkt 437 (440)
T KOG0302|consen 426 STAIDG-FNVFKT 437 (440)
T ss_pred Eecccc-eeEEEe
Confidence 999999 677754
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.3e-15 Score=178.45 Aligned_cols=256 Identities=13% Similarity=0.165 Sum_probs=185.3
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECC------CCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK------KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 1136 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~------tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIr 1136 (1349)
...|.+.|+.++|+ ...|++++.||+|++|++. .+...++.+|.+|.++|.|+++.+++..+++||.||+|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 45789999999996 4589999999999999993 234567899999999999999999999999999999999
Q ss_pred EEEccC------C---eEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCcceeeccC---C-CeEEEEeeC
Q 000694 1137 VWQMVQ------R---KLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIYRS---K-GIKSMSVVQ 1201 (1349)
Q Consensus 1137 VWDl~t------g---~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~---~-~V~~La~~d 1201 (1349)
.|++.. . ......+.+|.+.|+.+ +...+.+++++.||+++.|+..+.....+.. + .-..+++..
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc
Confidence 995531 1 12334566888888775 4677889999999999999987544322221 1 134444433
Q ss_pred CEE---EEEeCCCcEEEEEccCCccccccccccc-cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 000694 1202 GKI---YIGCMDSSIQELAVSNNVEREIKAPFKS-WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 1277 (1349)
Q Consensus 1202 g~L---lSGs~DGsI~IWDl~t~~~~~i~~~lk~-~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~ 1277 (1349)
... ++...-+.-.++|+.......+...... -......+..+..||..-+.++. .+|+.|+++|..++.++....
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-HEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-ccCCceecccccccccchhee
Confidence 322 2222222222333333221111000000 00113457778889988776655 478899999999999999999
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 000694 1278 EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1321 (1349)
Q Consensus 1278 gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h 1321 (1349)
.|...++++++.|+|.+|++|+.||.|++|......++.....|
T Consensus 529 a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999999999999999998887777665543
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=7.4e-16 Score=183.98 Aligned_cols=242 Identities=18% Similarity=0.300 Sum_probs=195.8
Q ss_pred EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec
Q 000694 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD 1161 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs 1161 (1349)
++.+..+-.+++||.+. +..|...|.++..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.
T Consensus 7 ~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~ 77 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLT 77 (825)
T ss_pred cceeeeeeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceeee
Confidence 44555566677887654 34688999999988888999999999999999986654442 3678999999965
Q ss_pred --CCCCEEEEEecCCeEEEEecCC-cceeeccCCC--eEEEEe-eCCEEE-EEeCCCcEEEEEccC-Ccccccccccccc
Q 000694 1162 --TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKG--IKSMSV-VQGKIY-IGCMDSSIQELAVSN-NVEREIKAPFKSW 1233 (1349)
Q Consensus 1162 --~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~~--V~~La~-~dg~Ll-SGs~DGsI~IWDl~t-~~~~~i~~~lk~~ 1233 (1349)
.....+++|+.+|+|++||+.. .......++. +..+.| |-+.+. .|+.|+.+.+||.+. |.. ..+
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-------~~~ 150 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-------HTY 150 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce-------eee
Confidence 6677889999999999999983 3334444443 667778 777655 588999999999984 432 345
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 1313 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~ 1313 (1349)
.+|...+..+.+.|++.+.+.++ +|.++++||...|+....|..|.+.+.++.|+|..-.+++||.|++|++||+++.+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cCCcceeEEEeecCCCceeeccC-CcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 67888899999999999998775 57899999999999999999999999999999999999999999999999999998
Q ss_pred EEEEEeCC-CCeEEEEEc--CCEEEEEECC
Q 000694 1314 KVGRISAG-SKITSLLTA--NDIVLCGTET 1340 (1349)
Q Consensus 1314 ~l~sl~~h-s~VtsLs~d--g~~LaSGS~D 1340 (1349)
.+...... ..|.+..|+ |..+.+|..+
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchh
Confidence 88877763 458999986 5566666554
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.7e-14 Score=157.70 Aligned_cols=211 Identities=14% Similarity=0.161 Sum_probs=141.2
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-----EEEEEecCCCCeEEecCCCCEEE-EEecCCeEEE
Q 000694 1105 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKLDTYGKTIF-ASTQGHRMKV 1178 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~-----~~~~~~~h~~~V~sLs~~g~~Lv-sgS~DgtIkV 1178 (1349)
..++||.+.|++++|+.||++|+|++.|++|++|+++.-.. +...+.........|+++...++ ++-.+.++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 35689999999999999999999999999999999976321 11111111111122444443333 2333334555
Q ss_pred EecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC
Q 000694 1179 IDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 1258 (1349)
Q Consensus 1179 WDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d 1258 (1349)
|.+..... |+..-...-||-- ..-..|.-.+..+-.-.+..++.+.+ .
T Consensus 160 yk~~K~~d--------------------G~~~~~~v~~D~~-----------~f~~kh~v~~i~iGiA~~~k~imsas-~ 207 (420)
T KOG2096|consen 160 YKLVKKTD--------------------GSGSHHFVHIDNL-----------EFERKHQVDIINIGIAGNAKYIMSAS-L 207 (420)
T ss_pred EEeeeccc--------------------CCCCccccccccc-----------ccchhcccceEEEeecCCceEEEEec-C
Confidence 54431100 0000001111110 01123445666677777888888876 5
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CC-----cEEEEEeCCCC-eEEEEE
Q 000694 1259 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG---TQ-----QKVGRISAGSK-ITSLLT 1329 (1349)
Q Consensus 1259 DgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~---tg-----~~l~sl~~hs~-VtsLs~ 1329 (1349)
|..|.+|+++ |+.+..+......-+..++||+|+++++++..--|+||..- .| ..+..+++|.. |.+++|
T Consensus 208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 7799999998 88888888777778888999999999999999999999632 22 24566777665 999999
Q ss_pred c--CCEEEEEECCCcEEEeeC
Q 000694 1330 A--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1330 d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+ ...+++.+.||+++|||.
T Consensus 287 sn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCCcceeEEEecCCcEEEeec
Confidence 6 459999999999999984
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=2.7e-14 Score=164.50 Aligned_cols=256 Identities=9% Similarity=0.046 Sum_probs=186.3
Q ss_pred ECCCcEEEEECCCCceeEEEEeccCC--CcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCC--eEEEEEE-ecCCCCeEE
Q 000694 1086 FSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGES-LLSGSADKTIGVWQMVQR--KLELIEV-IATKEPIRK 1159 (1349)
Q Consensus 1086 S~DGtIrVWDl~tg~~~~i~tL~gHs--s~VtsLafSpdg~~-LaSGS~DGtIrVWDl~tg--~~~~~~~-~~h~~~V~s 1159 (1349)
+...++++||...... .-.+..|+ ..+.++.|+..... +++.+.|..|++|.-... +...... .+......+
T Consensus 9 S~gd~~kl~D~s~~~~--~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLET--KSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred ccCCceEEeecccccC--ccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 3344689999976432 22222222 34899999866642 335567889999975332 2221111 111111112
Q ss_pred ecCCCCEEEEEecCCeEEEEecCCcc-eeeccCC--CeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccc
Q 000694 1160 LDTYGKTIFASTQGHRMKVIDSSRTL-KDIYRSK--GIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR 1234 (1349)
Q Consensus 1160 Ls~~g~~LvsgS~DgtIkVWDl~~~~-~~~~~~~--~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~ 1234 (1349)
.....-++++|+.++.|+|||+.... .....+| .|.++.+ .|.++++++..|.|.+..+.++...+. .-.
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~-----f~~ 161 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT-----FTI 161 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc-----eec
Confidence 22445789999999999999998533 3333343 3999998 677899999999999999988753221 112
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000694 1235 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1235 ~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~-tl~gH~~~VtsLafSP-Dg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
+.++.++-+.+++...++++..+++|.|.+||+....++. -...|..+..+++|+| +..+|++.|.|..|.+||....
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 3367778899999988888888899999999998866654 4457999999999999 5567899999999999999998
Q ss_pred cEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1313 QKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1313 ~~l~sl~~hs~VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
....++....+..+++| +|.+|+.|+..|.|..||.
T Consensus 242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 88888887778888887 5889999999999999984
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.1e-15 Score=188.48 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=174.5
Q ss_pred CCEEEEEEc------CCEEEEEECCCcEEEEECCC----CceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 000694 1070 GAVTALIYY------KGLLCSGFSDGSIKMWDIKK----QSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVW 1138 (1349)
Q Consensus 1070 ~~Vt~Lafs------dg~LaSGS~DGtIrVWDl~t----g~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVW 1138 (1349)
..-+.++|. .|.+|.|..||.|.+||... +....+.+...|++.|..+.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 455677772 24799999999999999864 33345667788999999999999876 89999999999999
Q ss_pred EccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe--eCCE-EEEEeCCCcEEE
Q 000694 1139 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV--VQGK-IYIGCMDSSIQE 1215 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~--~dg~-LlSGs~DGsI~I 1215 (1349)
|+..-+... ..+ + ......|.+++| ...+ +++|+.+|.+.|
T Consensus 145 Dlnn~~tP~--~~~------~----------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 145 DLNKPETPF--TPG------S----------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred ccCCcCCCC--CCC------C----------------------------CCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 997633211 000 0 001122444555 2223 445778888888
Q ss_pred EEccCCcccccccccccccc-CCCCeEEEEEcCCceEE-EEEecCC--CeEEEEECCC-CCeEEEecCCCCCeEEEEEec
Q 000694 1216 LAVSNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYS-ASSSVEG--SNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~-h~~~I~sL~~~pd~i~l-as~S~dD--gtIrIWDl~t-~~li~tl~gH~~~VtsLafSP 1290 (1349)
||++..+.. + +.-.. ....+..+.|||+...- +..+.+| -.|.+||++. ..+++++.+|...|.++.|++
T Consensus 189 WDlr~~~pi-i----~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 189 WDLRKKKPI-I----KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred ccccCCCcc-c----ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCC
Confidence 888876311 0 11011 12447789999985433 2333334 3799999875 567888899999999999998
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEc---CCEEEEEECCCcEEEeeC
Q 000694 1291 DF-IYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLTA---NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1291 Dg-~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~d---g~~LaSGS~DGtIrIWD~ 1348 (1349)
.+ .+++|++.|+.|.+|+.++++.+..+.. ++++..+.|. +..+++++-||.|.||+.
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 65 8999999999999999999999999986 5568999996 559999999999999874
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=4.7e-12 Score=144.65 Aligned_cols=281 Identities=19% Similarity=0.298 Sum_probs=206.1
Q ss_pred eeeeecccCCCCEEEEEEc-CC-EEEEEEC-CCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeE
Q 000694 1060 QILEASHKCSGAVTALIYY-KG-LLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTI 1135 (1349)
Q Consensus 1060 ~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~-DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtI 1135 (1349)
.......+|...|.+++|. ++ .+++++. |+.+++|+..++.. +..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 4445678999999999995 44 6888875 99999999998554 778888999999999999998 55566999999
Q ss_pred EEEEccCCeEEEEEEecCCCC-eEEecCCCCEEEEEecCCeEEEEecCCcce--eec--cCCCeEEEEe-e-CCEEEEEe
Q 000694 1136 GVWQMVQRKLELIEVIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTLK--DIY--RSKGIKSMSV-V-QGKIYIGC 1208 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~-V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~--~~~--~~~~V~~La~-~-dg~LlSGs 1208 (1349)
++||...+.........|... +..+.+++..+++++.|+.+++|+...... ... +...+.++.+ + ...+++++
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 999988776654344555555 556788888888999999999999984332 221 2345888888 5 45666788
Q ss_pred CCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 000694 1209 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1209 ~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf 1288 (1349)
.|+.+.+||..+........ ...+...+..+.+.++......+...|+.+.+|+............. ..+..+.+
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 378 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSF 378 (466)
T ss_pred CCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEE
Confidence 88999999888774332211 12455568888883331333333245688999999887633333322 22889999
Q ss_pred ecCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1289 VEDFIYLNY-NSSASSLQIWLRGTQQKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1289 SPDg~~LaS-GS~DGtVrVWDl~tg~~l~sl~~h-s~VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
++ ...+.+ +..++.+.+|+............+ ..+....+ ++..+++++.++++++|+.
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 88 544444 688999999999999888888776 66766665 4668888999999999985
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=5.2e-14 Score=165.79 Aligned_cols=265 Identities=15% Similarity=0.208 Sum_probs=189.2
Q ss_pred CEEEEEE-cCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 000694 1071 AVTALIY-YKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1071 ~Vt~Laf-sdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~ 1148 (1349)
.|..++| +|| .++.+. +..+.+||.+.|.. +.+++||++.|.|++|+.||+.++||+.|+.|.+|+..-.. .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---I 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc--ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---e
Confidence 7889999 566 333333 34688999999875 88999999999999999999999999999999999864322 3
Q ss_pred EEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc-ceeeccCCCeEEEEe-eCCEEE-EEeCCCcEEEEEccCCcc
Q 000694 1149 EVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT-LKDIYRSKGIKSMSV-VQGKIY-IGCMDSSIQELAVSNNVE 1223 (1349)
Q Consensus 1149 ~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~~~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~ 1223 (1349)
....|.+.|.+++ |-...+++++- ...-+|..... .........+.+.+| .||.++ .|-.||+|.+-+-.....
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 3457889999865 66677777765 34567877643 222223344778888 777665 488999999886555444
Q ss_pred ccccccccccccCCCCeEEEEEcCCce----EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000694 1224 REIKAPFKSWRLQSKPINSLVVYKDWL----YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1224 ~~i~~~lk~~~~h~~~I~sL~~~pd~i----~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS 1299 (1349)
..+..| .+.+.+|.+++++|... -+.+....+.++.++.+. |+.+..-+.-.-...|+.+-|+|.|+..||
T Consensus 167 ~~I~Rp----gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 167 VKIERP----GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eEEeCC----CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 444222 45678999999998632 111112234556666654 333332222334567899999999999999
Q ss_pred CCCcEEEEECCCCcEEEEEeC-CCCeEEEE--EcCCEEEEEECCCcEEEeeC
Q 000694 1300 SASSLQIWLRGTQQKVGRISA-GSKITSLL--TANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1300 ~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs--~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|+.+.+|-. .|-.+.++.. ..+|+.+. ++++.++.|+.||+|--|+.
T Consensus 242 sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999964 4566666654 56688877 57889999999999987764
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=157.40 Aligned_cols=276 Identities=13% Similarity=0.154 Sum_probs=184.4
Q ss_pred cccCCCCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 000694 1065 SHKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~-gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t 1142 (1349)
.++|.+.|+|+.|. +++|.+|..-|.|++|++.+.+. ...+. .|...|+.+...|+ ..+.+-+.|+.+.+|++..
T Consensus 10 LRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eccccchheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 45899999999995 77999999999999999998765 44555 47789999999887 5688999999999999977
Q ss_pred CeEEEEEEecCCCCeEEecCCCCEEEEEecCC-e-----------EEEEecCCcc-------eeeccCCCeEEEEe--eC
Q 000694 1143 RKLELIEVIATKEPIRKLDTYGKTIFASTQGH-R-----------MKVIDSSRTL-------KDIYRSKGIKSMSV--VQ 1201 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sLs~~g~~LvsgS~Dg-t-----------IkVWDl~~~~-------~~~~~~~~V~~La~--~d 1201 (1349)
+..+... .-.+.++......+...+... . +.+-|..... ....+...+.|..+ ..
T Consensus 87 s~~i~i~----Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 87 SAFISIH----SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cceEEEe----eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 6543221 111222111111111111111 1 1111111110 01111223666665 22
Q ss_pred C-E--EEEEeCCCcEEEEEccCCccc-ccc---ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe
Q 000694 1202 G-K--IYIGCMDSSIQELAVSNNVER-EIK---APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ 1272 (1349)
Q Consensus 1202 g-~--LlSGs~DGsI~IWDl~t~~~~-~i~---~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t--~~l 1272 (1349)
+ + +++|-.+|.+.+||+.++... .+. ........|.+++.++.+.+....-++++.++ .+..|+++. +.+
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSLNHSTGSL 241 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeeeccccCcc
Confidence 2 2 446889999999999987211 110 11112234788999998886544444444434 677888753 222
Q ss_pred --EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEECCCcEEEee
Q 000694 1273 --ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1273 --i~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg~--~LaSGS~DGtIrIWD 1347 (1349)
-....-..-.|..+.+-||++.+||+|+||.||||+.++.+++..+.-|+. |++++|+++ .+|+++.|++|.+|+
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 122222344688899999999999999999999999999999999997665 999999754 999999999999998
Q ss_pred C
Q 000694 1348 P 1348 (1349)
Q Consensus 1348 ~ 1348 (1349)
.
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 5
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=1.2e-13 Score=151.28 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=152.1
Q ss_pred ccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCe------EE----EE----EEecCCCCeEEec---CCCCEEEE
Q 000694 1108 KEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRK------LE----LI----EVIATKEPIRKLD---TYGKTIFA 1169 (1349)
Q Consensus 1108 ~gHss~VtsLafSp-dg~~LaSGS~DGtIrVWDl~tg~------~~----~~----~~~~h~~~V~sLs---~~g~~Lvs 1169 (1349)
..|.+.|+++.+.+ .|+++++|+.||.|.|||+.... .+ +. ....|+-.|.+.. .+...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999986 57899999999999999997632 11 11 1123455566532 46677888
Q ss_pred EecCCeEEEEecCCc--ceeeccCCCeEEEEe-----eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEE
Q 000694 1170 STQGHRMKVIDSSRT--LKDIYRSKGIKSMSV-----VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 1242 (1349)
Q Consensus 1170 gS~DgtIkVWDl~~~--~~~~~~~~~V~~La~-----~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~s 1242 (1349)
++.|.+++|||.+.. ...+.....|..-++ ....+++|..|-.|++.|+..|... ..+.+|.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------eeeccccCceEE
Confidence 999999999999842 222223333544443 3345667889999999999998532 456889999999
Q ss_pred EEEcCCceEEEEEecCCCeEEEEECCCC-CeEE--------------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000694 1243 LVVYKDWLYSASSSVEGSNIKEWRRHRK-PQIS--------------IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1307 (1349)
Q Consensus 1243 L~~~pd~i~las~S~dDgtIrIWDl~t~-~li~--------------tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVW 1307 (1349)
+.|+|...+++..++.||.|++||++.. .+.. .-..|.+.|.+++|+.||.++++++.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 9999999998888888999999998642 2222 234577789999999999999999999999999
Q ss_pred ECCCCcE
Q 000694 1308 LRGTQQK 1314 (1349)
Q Consensus 1308 Dl~tg~~ 1314 (1349)
+..+|+.
T Consensus 274 n~~~G~n 280 (397)
T KOG4283|consen 274 NMESGRN 280 (397)
T ss_pred ecccCcc
Confidence 9887753
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=8.9e-13 Score=157.61 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=182.8
Q ss_pred cCCCCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1067 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
+-.+.|.+++|. +++|++.+-+|+|.-||+.+++. ...+....++|++++.+|.++.++.|+.||.+...+...+..
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~--~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ--KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCce--eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 446789999997 66899999999999999999875 666677788999999999999999999999888888888877
Q ss_pred EEEEEec-CCCCeEEec--CCCCEEEEEecCCeEEEEecCCcceee---------ccCCC--eEEEEe-eCCEEEEEeCC
Q 000694 1146 ELIEVIA-TKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKDI---------YRSKG--IKSMSV-VQGKIYIGCMD 1210 (1349)
Q Consensus 1146 ~~~~~~~-h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~~~---------~~~~~--V~~La~-~dg~LlSGs~D 1210 (1349)
....... .++.|.+++ +++..+++|+.||.|++||........ ..... |+++.+ .++.+++|..-
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence 6655444 346677754 777789999999999999997422111 11122 777777 89999999999
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-C---eEEEecCCCCCeEEE
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-P---QISIAPEKGTTIQAM 1286 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~---li~tl~gH~~~VtsL 1286 (1349)
|+|.+||...+... +.+..|...|.+++..++...+.+++. |+.|..|...++ . .......|...|.++
T Consensus 225 G~V~FWd~~~gTLi------qS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLI------QSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred ceEEEEcccCcchh------hhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCCccceeeeccccCCcccceee
Confidence 99999999988643 344667788999999998777776665 455555555443 2 233445788999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCC
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~t 1311 (1349)
+..++ .+++||.|+++.+-....
T Consensus 298 av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 298 AVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeecc--eEEecceeeEEEEccccc
Confidence 99887 899999999998865443
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.57 E-value=3.4e-13 Score=161.11 Aligned_cols=285 Identities=14% Similarity=0.149 Sum_probs=191.9
Q ss_pred eeeecccCCCCEEEEEE-cC-C---EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 000694 1061 ILEASHKCSGAVTALIY-YK-G---LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTI 1135 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Laf-sd-g---~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtI 1135 (1349)
.+.+..||.++|+|+.| +. . ++++|+.||.|++|.++......+.++++|...+.|+.- ......+.+.|+++
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a--~~~~~~~~~ad~~v 123 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA--RSSVMTCKAADGTV 123 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe--eeeEEEeeccCceE
Confidence 44567899999999999 32 2 699999999999999997667778889988777666642 22222233789999
Q ss_pred EEEEccCCeEEEEEE--ecCCCCe-EEec--C-CCCE-EEEEecCCeEEEEecCC---cceeeccCCC--eEEEEe--eC
Q 000694 1136 GVWQMVQRKLELIEV--IATKEPI-RKLD--T-YGKT-IFASTQGHRMKVIDSSR---TLKDIYRSKG--IKSMSV--VQ 1201 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~--~~h~~~V-~sLs--~-~g~~-LvsgS~DgtIkVWDl~~---~~~~~~~~~~--V~~La~--~d 1201 (1349)
.+||....+..+... ...+..+ .+++ + ++.. ++.|+.+..|.++.-.. .......+|. |.+++| ..
T Consensus 124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG 203 (764)
T ss_pred EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence 999996555222111 1111111 1222 3 2333 34455555677765541 1122223443 889988 33
Q ss_pred C---EEEEEeCCCcEEEEEccCCccc----------------------ccc---ccccccccCCCCeEEEEEcCCceEEE
Q 000694 1202 G---KIYIGCMDSSIQELAVSNNVER----------------------EIK---APFKSWRLQSKPINSLVVYKDWLYSA 1253 (1349)
Q Consensus 1202 g---~LlSGs~DGsI~IWDl~t~~~~----------------------~i~---~~lk~~~~h~~~I~sL~~~pd~i~la 1253 (1349)
+ .++++++|..|++|.+.-+... ++. .......+|..-|+++.++|.+..++
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 3 3557999999999988533200 000 00123357899999999999997777
Q ss_pred EEecCCCeEEEEECCCC--Ce-----EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEEEeCCCC
Q 000694 1254 SSSVEGSNIKEWRRHRK--PQ-----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT---QQKVGRISAGSK 1323 (1349)
Q Consensus 1254 s~S~dDgtIrIWDl~t~--~l-----i~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~t---g~~l~sl~~hs~ 1323 (1349)
+.+ .|+++.+|..... -- +....|.....++..|+|++..+++-+..|..++|.... ......+.||-.
T Consensus 284 SAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 284 SAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred ecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 665 4789999987553 21 223334456789999999999999999999999997332 233444556654
Q ss_pred -eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1324 -ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1324 -VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
|+.++|+ |.+|.+.|.|.+-|++-+
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecc
Confidence 9999997 889999999999999753
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.57 E-value=7.4e-14 Score=160.92 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=185.9
Q ss_pred CEEEEEEc-CCE--EEEEECCCcEEEEECCCC--ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1071 AVTALIYY-KGL--LCSGFSDGSIKMWDIKKQ--SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1071 ~Vt~Lafs-dg~--LaSGS~DGtIrVWDl~tg--~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
.|.++.|. .+. +++.+.|..+++|.-... +...+....|. .-.|++......++++||..+.|+|||++ .++
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-AKL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-HHH
Confidence 48999995 443 556667889999976554 22223333332 44455555556899999999999999998 445
Q ss_pred EEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcceeecc----CCCeEEEEe-eC-CE-EEEEeCCCcEEEE
Q 000694 1146 ELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKDIYR----SKGIKSMSV-VQ-GK-IYIGCMDSSIQEL 1216 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~~~~~----~~~V~~La~-~d-g~-LlSGs~DGsI~IW 1216 (1349)
......+|...|+++. ....+|++++.+|.|.+..+......... +..|+-+.+ +- .. +.+++++|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 5567788999999865 67789999999999999998754333222 223667777 33 33 4469999999999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 1296 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~La 1296 (1349)
|+...... ......|..|...++|+|....++..-+-|+.|.+||+........+. -..+...++|+++|.+|+
T Consensus 193 Dv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 193 DVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLC 266 (673)
T ss_pred eccCCCcc-----cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEE
Confidence 99876321 112245788999999999876665555568899999998776666554 456789999999999999
Q ss_pred EEeCCCcEEEEECCCC-cEEEEEeCCCC-eEEEEEc
Q 000694 1297 YNSSASSLQIWLRGTQ-QKVGRISAGSK-ITSLLTA 1330 (1349)
Q Consensus 1297 SGS~DGtVrVWDl~tg-~~l~sl~~hs~-VtsLs~d 1330 (1349)
.|+..|.|..||++.. .++..+..|.. |++++|-
T Consensus 267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred eecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 9999999999998754 57888876654 9999985
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=154.32 Aligned_cols=260 Identities=12% Similarity=0.179 Sum_probs=177.0
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEccCCeEEEEE-EecCC-C
Q 000694 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVWQMVQRKLELIE-VIATK-E 1155 (1349)
Q Consensus 1080 g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSp--dg~~LaSGS~DGtIrVWDl~tg~~~~~~-~~~h~-~ 1155 (1349)
..+|+|.+.|+|++||..+++. +..+++|...++.+.|.. ....+.+|+.||+|++||++........ ...+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 3699999999999999999765 788999999999999986 4567899999999999999885543322 23333 4
Q ss_pred CeEEecC--CCCEEEEEe----cCCeEEEEecCCcce---eeccCC--CeEEEEe-e--CCEEEEEeCCCcEEEEEccCC
Q 000694 1156 PIRKLDT--YGKTIFAST----QGHRMKVIDSSRTLK---DIYRSK--GIKSMSV-V--QGKIYIGCMDSSIQELAVSNN 1221 (1349)
Q Consensus 1156 ~V~sLs~--~g~~LvsgS----~DgtIkVWDl~~~~~---~~~~~~--~V~~La~-~--dg~LlSGs~DGsI~IWDl~t~ 1221 (1349)
+..++.. .++.+++|+ .+-.+.+||++...+ .....| .|+++.| | .+.+++|+.||-|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6667774 455666664 345799999984332 233333 3999999 4 357889999999999999765
Q ss_pred ccccccccccccccCCCCeEEEEEcCCc---eEEEEEecCCCeEEEEECCCCCeEEEecCCC------------CCeEEE
Q 000694 1222 VEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSNIKEWRRHRKPQISIAPEKG------------TTIQAM 1286 (1349)
Q Consensus 1222 ~~~~i~~~lk~~~~h~~~I~sL~~~pd~---i~las~S~dDgtIrIWDl~t~~li~tl~gH~------------~~VtsL 1286 (1349)
..... . ...-.++..|..+.|+.++ +++++ ...+..+|+++.+.....+.... ..+...
T Consensus 199 ~EeDa--L-~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 199 NEEDA--L-LHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred cchhh--H-HHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 22110 1 1112356779999998765 44444 36689999998876654443221 112222
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEC---CC---CcEEEEEeCCC-C-eEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1287 AVVEDFIYLNYNSS-ASSLQIWLR---GT---QQKVGRISAGS-K-ITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1287 afSPDg~~LaSGS~-DGtVrVWDl---~t---g~~l~sl~~hs-~-VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
-...++.+.+.++. -|+..++-+ .+ ++.+..+.++. . |.++.|+ ++++.+||+||.+.+|.
T Consensus 273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11234555555554 566666632 33 33455566533 3 7888886 77999999999999996
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.56 E-value=3.5e-14 Score=163.58 Aligned_cols=231 Identities=14% Similarity=0.210 Sum_probs=182.1
Q ss_pred CCCEEEEEE-cCC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIY-YKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Laf-sdg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
.+.|+++.. +|| .|++|+.-.++.|||+..........+....-....++.+||.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 456776666 566 599999999999999987665444444433446778899999999999999999999999887665
Q ss_pred EEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCC--cceeeccCCCeEEEEe-eCCE-EEEEeCCCcEEEEEccC
Q 000694 1147 LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSV-VQGK-IYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~--~~~~~~~~~~V~~La~-~dg~-LlSGs~DGsI~IWDl~t 1220 (1349)
..+.+|.+.+.|+ +.+|..+++|+-|++|+.||++. +.........|.++.+ |.+. ++.|-.++.+-+.....
T Consensus 545 -rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 -RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred -ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 4667888888885 57899999999999999999984 3344444455888887 6654 55688888888777665
Q ss_pred CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000694 1221 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1221 ~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
.... .+..|...|.++.|.+-+.+.++.+ .|+.+..|....|..+...+ ..+.|.++.+|-|.++|+||+.
T Consensus 624 p~ky-------qlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 624 PEKY-------QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccce-------eecccccEEEEEEecccCceeeecC-chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCC
Confidence 5422 2256789999999999999999876 46689999988887766655 4567999999999999999999
Q ss_pred CCcEEEEEC
Q 000694 1301 ASSLQIWLR 1309 (1349)
Q Consensus 1301 DGtVrVWDl 1309 (1349)
|....||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 988888864
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=2e-11 Score=139.52 Aligned_cols=276 Identities=19% Similarity=0.314 Sum_probs=201.1
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCC-CcEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSL-FEPGE-SLLSGSA-DKTIGVW 1138 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs-s~VtsLaf-Spdg~-~LaSGS~-DGtIrVW 1138 (1349)
..+|...|.++.+. .+ .++.++.|+.+.+|+...+. ..+..+.++. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 46789999999995 33 68888899999999999875 2355666644 37888887 88887 5555444 9999999
Q ss_pred EccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEec-CCeEEEEecCC-cceeecc--CCCeEEEEe-eCCE-EEEE-eC
Q 000694 1139 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQ-GHRMKVIDSSR-TLKDIYR--SKGIKSMSV-VQGK-IYIG-CM 1209 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~-DgtIkVWDl~~-~~~~~~~--~~~V~~La~-~dg~-LlSG-s~ 1209 (1349)
|.............|...|.. +.+++..+++++. ++.+++|+... ....... ...+.++.+ +++. ++++ +.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 998722233456677777775 5678888888875 99999999984 3333333 344889998 6775 5544 89
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecCCCCCeEEEEE
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l-i~tl~gH~~~VtsLaf 1288 (1349)
|+.|++||...+..... .+..|.... ...+++++.++++ ...++.+++|+...... ...+.+|...+.++.|
T Consensus 220 d~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 220 DGTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLAS-GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred CCcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEE-ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 99999998875532210 234554443 2278888755553 34688999999986554 4444678899999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCC-eEEEEEc--CCEEEEE-ECCCcEEEeeC
Q 000694 1289 VEDFIYLNYNSSASSLQIWLRGTQQKVGRIS--AGSK-ITSLLTA--NDIVLCG-TETGLIKGWIP 1348 (1349)
Q Consensus 1289 SPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~--~hs~-VtsLs~d--g~~LaSG-S~DGtIrIWD~ 1348 (1349)
+|++..+++++.|+.+.+|+..+........ .+.. +..+.+. +..++.+ ..|+.+.+|+.
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 9999999999999999999999888777765 5554 7888773 1455555 68899999974
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=3.4e-13 Score=155.16 Aligned_cols=239 Identities=11% Similarity=0.170 Sum_probs=178.3
Q ss_pred EEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCeE---EEEEEecCCCCeEEec---CCCCEEEEEecCCeE
Q 000694 1105 WDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRKL---ELIEVIATKEPIRKLD---TYGKTIFASTQGHRM 1176 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~--~LaSGS~DGtIrVWDl~tg~~---~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtI 1176 (1349)
...+-|.++|++++|+|... .+++|..-|+|-+||+.+.+. -......|..+|.++. .+...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34456889999999999775 688999999999999963221 1235567888998854 466789999999999
Q ss_pred EEEecCCcceeec-cC----CCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCc
Q 000694 1177 KVIDSSRTLKDIY-RS----KGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW 1249 (1349)
Q Consensus 1177 kVWDl~~~~~~~~-~~----~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~ 1249 (1349)
+.-|+++...... .. ..+..+.+ .++.++.|..=|...+||++++... ...|..|...|++++++|-.
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-----~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-----YENLRLHKKKITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-----chhhhhhhcccceeecCCCC
Confidence 9999986443322 22 22566666 5567778877779999999987532 12456788899999999987
Q ss_pred eEEEEEecCCCeEEEEECCC---CC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CCCcEEEEEeCC
Q 000694 1250 LYSASSSVEGSNIKEWRRHR---KP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR----GTQQKVGRISAG 1321 (1349)
Q Consensus 1250 i~las~S~dDgtIrIWDl~t---~~-li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl----~tg~~l~sl~~h 1321 (1349)
.+.++.++-|++.+|||++. .. ++-....|...|.+..|||.|..|+|.+.|..|+|||. ....+...+.|.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 76666666788999999875 22 22333459999999999999888999999999999998 455677777763
Q ss_pred C----CeE--EEEEcC--CEEEEEECCCcEEEeeC
Q 000694 1322 S----KIT--SLLTAN--DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1322 s----~Vt--sLs~dg--~~LaSGS~DGtIrIWD~ 1348 (1349)
. +++ ...|++ .++++|-.-..|-|+|.
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 2 233 334664 48888888777887764
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.54 E-value=1.1e-13 Score=153.91 Aligned_cols=262 Identities=12% Similarity=0.160 Sum_probs=177.7
Q ss_pred ccCCCCEEEEEEc----CC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 000694 1066 HKCSGAVTALIYY----KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs----dg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVW 1138 (1349)
..|...-..++|. .+ ++|.||.-|.|+|.|+.++++ ...+.||...|+.+.|.|+. +++++||.|.+||+|
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 4577777888883 22 799999999999999999876 77889999999999999987 678899999999999
Q ss_pred EccCCeEEEEEE--ecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcc-eeeccCCCeEEEEe-eCCEEEEEeCCCc
Q 000694 1139 QMVQRKLELIEV--IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL-KDIYRSKGIKSMSV-VQGKIYIGCMDSS 1212 (1349)
Q Consensus 1139 Dl~tg~~~~~~~--~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~-~~~~~~~~V~~La~-~dg~LlSGs~DGs 1212 (1349)
|+.++.++..+- .+|.+.|.+ ++.++..+++++.|.++++|+++... ..... .++.+ +++..-- --...
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~~~~~t~~p-fpt~~ 238 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITYSPNKTTRP-FPTPK 238 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh----hhcccCCCCccCc-CCccc
Confidence 999999876543 368888988 45889999999999999999997211 10000 00111 1110000 00000
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCC-------------eEEEecC
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKP-------------QISIAPE 1278 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~-t~~-------------li~tl~g 1278 (1349)
..+.|.. .-+.|...|.++.|..+.+ ++-+. ++.|..|... -++ .+..+.-
T Consensus 239 ~~fp~fs------------t~diHrnyVDCvrw~gd~i--lSksc-enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~ 303 (385)
T KOG1034|consen 239 THFPDFS------------TTDIHRNYVDCVRWFGDFI--LSKSC-ENAIVCWKPGKLEESIHNVKPPESATTILGEFDY 303 (385)
T ss_pred ccccccc------------ccccccchHHHHHHHhhhe--eeccc-CceEEEEecchhhhhhhccCCCccceeeeeEecc
Confidence 1111111 1134566666666666443 33332 5588888762 111 1233333
Q ss_pred CCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCcEE--EEEeC---CCCeEEEEE--cCCEEEEEECCCcEEEeeCC
Q 000694 1279 KGTTIQAMA--VVEDFIYLNYNSSASSLQIWLRGTQQKV--GRISA---GSKITSLLT--ANDIVLCGTETGLIKGWIPL 1349 (1349)
Q Consensus 1279 H~~~VtsLa--fSPDg~~LaSGS~DGtVrVWDl~tg~~l--~sl~~---hs~VtsLs~--dg~~LaSGS~DGtIrIWD~L 1349 (1349)
....|+-+. |.|-++.||.|...|.|.+||++..++. .++.+ ...|...+| +|.+|+..++||+|.-||-+
T Consensus 304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 344555554 5577899999999999999999887763 23332 233655555 68999999999999999853
No 157
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=173.11 Aligned_cols=266 Identities=11% Similarity=0.117 Sum_probs=196.0
Q ss_pred ecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1064 ASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
...||.+.|.|+.|+ .| ++++|+.|..++||..+++.+ ..+..||.+.|+.++.+.+...++++|.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 357999999999996 34 799999999999999998776 78899999999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcc-------eeeccCCCeEEEEe--eCCEEEEEeCCCc
Q 000694 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL-------KDIYRSKGIKSMSV--VQGKIYIGCMDSS 1212 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~-------~~~~~~~~V~~La~--~dg~LlSGs~DGs 1212 (1349)
+|..+ ..+.+|.+.|+++...... +.+.||++++||.+-.. .......-+.++.+ ....+.+|+.|+.
T Consensus 263 ~~~pv-svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 263 DGAPV-SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CCchH-HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 98765 3556899999997644332 77899999999998221 11222223556666 3345778999988
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-C
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-D 1291 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP-D 1291 (1349)
-..|.+..... +...+.-+....+..........+-.+++|++.+|...+.+.+|...+..+.++| +
T Consensus 340 a~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 340 ARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred cccchhhHhhh------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 88776543211 1111111111111111111122356789999999999999999999999999999 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEE--cCCEEEEEECCCcEEEe
Q 000694 1292 FIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITSLLT--ANDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~tg~~l~sl~-~hs~VtsLs~--dg~~LaSGS~DGtIrIW 1346 (1349)
.....+++.||...|||+-.|.++..+. +|+.+..-.| +|..++....-|.++|.
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 5566788999999999999998886655 4666544444 46677777777777664
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=7.5e-13 Score=144.94 Aligned_cols=247 Identities=12% Similarity=0.115 Sum_probs=173.4
Q ss_pred eecccCCCCEEEEEEc---CCEEEEEECC-------CcEEEEECCCCc-------eeEEEEec-cCCCcEEEEEEcCCCC
Q 000694 1063 EASHKCSGAVTALIYY---KGLLCSGFSD-------GSIKMWDIKKQS-------AMLVWDVK-EHRKAVTSFSLFEPGE 1124 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs---dg~LaSGS~D-------GtIrVWDl~tg~-------~~~i~tL~-gHss~VtsLafSpdg~ 1124 (1349)
+++..|.+.|+.++-+ .+.|+|+..| ..+-||.+.... ...+..+. .|-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 3467889999999985 2357766553 246799886421 11233343 4567999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCC-CCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCE
Q 000694 1125 SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGK 1203 (1349)
Q Consensus 1125 ~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~-g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~ 1203 (1349)
.+++-. |..|.+|++..+......+... .+.. ...+.+|. |... .+|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss------~s~e~~~~ftsg~-------WspH-----------------Hdgn 185 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSS------ESAEMRHSFTSGA-------WSPH-----------------HDGN 185 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeeccc------ccccccceecccc-------cCCC-----------------Cccc
Confidence 999776 8899999998765421111100 0001 11111111 1110 3566
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCC
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTT 1282 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~ 1282 (1349)
-+....|+++..||+++.... ...-+.|+..+..+.++|+....++..+|||.|++||.+. ..++..+.+|..+
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~-----~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKN-----NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred eEEEeCCCcEEEEEccchhhh-----cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 677778999999999976422 1233678999999999999988888888999999999965 7789999999999
Q ss_pred eEEEEEecC-CCEEEEEeCCCcEEEEECCCCc-----------------------------EEEEEeCC-CCeEEEEEc-
Q 000694 1283 IQAMAVVED-FIYLNYNSSASSLQIWLRGTQQ-----------------------------KVGRISAG-SKITSLLTA- 1330 (1349)
Q Consensus 1283 VtsLafSPD-g~~LaSGS~DGtVrVWDl~tg~-----------------------------~l~sl~~h-s~VtsLs~d- 1330 (1349)
|+++.|+|. .+++.+||.|..|.+|...+-. .+.++..| ..|++++|+
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 999999994 5678999999999999532210 12233333 359999996
Q ss_pred --CCEEEEEECCCcEEE
Q 000694 1331 --NDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1331 --g~~LaSGS~DGtIrI 1345 (1349)
+=.+|+-+.||++.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 559999999999876
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=1.3e-13 Score=158.20 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=151.2
Q ss_pred cccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEc
Q 000694 1065 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl 1140 (1349)
..+|++.|.+++|+ .+.||+||.|.+|++||+.++++ ..++..|.+.|.++.|+|.. ..|++|+.|++|.+.|.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP--KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc--ceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 35899999999996 34799999999999999999987 67788899999999999865 67999999999999998
Q ss_pred cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe---eCCEEEEEeCCCcEEEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV---VQGKIYIGCMDSSIQELA 1217 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~---~dg~LlSGs~DGsI~IWD 1217 (1349)
+..... + +-|.+. ..|..+.| ....+++++.||+|+-+|
T Consensus 317 R~~~~s--------~---------------------~~wk~~---------g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 317 RDPSNS--------G---------------------KEWKFD---------GEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred cCcccc--------C---------------------ceEEec---------cceEEEEecCCCceeEEEecCCceEEeee
Confidence 752110 0 011111 11222333 334577788999999999
Q ss_pred ccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEecCCCCCeEEEEEecCCC-E
Q 000694 1218 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFI-Y 1294 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l--i~tl~gH~~~VtsLafSPDg~-~ 1294 (1349)
+|... .++.....|..+|.+++++.....+++..+.++.|++|++..... +..-.-.-+...|.++.|+-. +
T Consensus 359 ~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 359 IRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred cCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence 98864 233455678999999999988777766677799999999865332 221111123466777777654 5
Q ss_pred EEEEeCCCcEEEEECCCCcEE
Q 000694 1295 LNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
++.||..+.++|||+.+...+
T Consensus 434 la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEecCccceEEEeecccChhH
Confidence 777888889999998887654
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=9.2e-13 Score=162.49 Aligned_cols=256 Identities=19% Similarity=0.238 Sum_probs=177.2
Q ss_pred eEEEEEeeeeeecccC---CCCEEEEEEcC----CEEEEEECCCcEEEEECC-C--CceeEEEEec---cC----CCcEE
Q 000694 1053 RISCVHTQILEASHKC---SGAVTALIYYK----GLLCSGFSDGSIKMWDIK-K--QSAMLVWDVK---EH----RKAVT 1115 (1349)
Q Consensus 1053 ~w~~~~t~tl~~~~gH---~~~Vt~Lafsd----g~LaSGS~DGtIrVWDl~-t--g~~~~i~tL~---gH----ss~Vt 1115 (1349)
.|+|.....+..+..+ ...|+.+.+-+ ..+.+|+.||.||||+-- + ++.+.+..+. ++ .+.=.
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence 4555555554444333 45789999832 269999999999999743 2 3333343332 21 12224
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCc----ceee
Q 000694 1116 SFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT----LKDI 1188 (1349)
Q Consensus 1116 sLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~----~~~~ 1188 (1349)
-+.|.....+|+++|.-..|+|||............+....|++++ .+|+.+++|-.||.|++||.+-. ....
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 4678777777888887899999999887776655566777788876 56899999999999999998732 2222
Q ss_pred ccCC----CeEEEEe-e--CCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCe
Q 000694 1189 YRSK----GIKSMSV-V--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 1261 (1349)
Q Consensus 1189 ~~~~----~V~~La~-~--dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgt 1261 (1349)
...+ +|..+.+ + .+++++|+.||.|++||++.............|.. +...+++.+|+....+++++ .+.
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs--~q~ 1326 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGS--AQL 1326 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecC--cce
Confidence 2222 2777777 3 35799999999999999998522222111111211 33589999999998888876 378
Q ss_pred EEEEECCCCCeEEEecC-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1262 IKEWRRHRKPQISIAPE-------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1262 IrIWDl~t~~li~tl~g-------H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
|+||++... .+..++. ..+.+.+++|+|..-.+|+|+.|.+|.||.....
T Consensus 1327 ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1327 IKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999998653 2222222 2246799999999999999999999999976554
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.3e-12 Score=161.11 Aligned_cols=270 Identities=14% Similarity=0.183 Sum_probs=185.6
Q ss_pred CCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccC---CCcEEEEEEcC--CCCEEEEEeCCCeEEEEEccC
Q 000694 1070 GAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH---RKAVTSFSLFE--PGESLLSGSADKTIGVWQMVQ 1142 (1349)
Q Consensus 1070 ~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gH---ss~VtsLafSp--dg~~LaSGS~DGtIrVWDl~t 1142 (1349)
..-..+.|+ ...++++...-.|+|||.+.++. ...|..+ ...|+.+.+-. |...+++|+.||.||||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 344455554 34688888888999999998765 4445433 35788998864 345789999999999997432
Q ss_pred C-----eEEEEEEe---------cCCCCeEEecCCCCEEEEEecCCeEEEEecCCccee--ec--cCCCeEEEEe--eC-
Q 000694 1143 R-----KLELIEVI---------ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IY--RSKGIKSMSV--VQ- 1201 (1349)
Q Consensus 1143 g-----~~~~~~~~---------~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~--~~--~~~~V~~La~--~d- 1201 (1349)
. +++ +.+. ...+.+..+....+.+++++.-..|+|||.+++... +. ....++++.- ..
T Consensus 1143 ~~~~~~eLV-Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELV-TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeE-EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 1 222 1111 122345566666677777777889999999854322 21 2233677765 34
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccccccccCCCC--eEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEEEe--
Q 000694 1202 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP--INSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQISIA-- 1276 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~--I~sL~~~pd~i~-las~S~dDgtIrIWDl~t~~li~tl-- 1276 (1349)
+.+++|..||.|++||.+..... ..+..|+.|... |..+.+.+.+.- +++++ .+|.|++||++.......+
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred ceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecccCccccccee
Confidence 56778999999999999876322 234567777665 888888886554 55554 5889999999874222222
Q ss_pred cCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--------CCCeEEEEEcCC--EEEEEECCCcE
Q 000694 1277 PEK---GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA--------GSKITSLLTAND--IVLCGTETGLI 1343 (1349)
Q Consensus 1277 ~gH---~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~--------hs~VtsLs~dg~--~LaSGS~DGtI 1343 (1349)
..| ++..+++..+++...+|+|+. +.|+||++.. +.+..+.. -+.+.|++|++. ++|+|+.|.+|
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 222 235999999999999999998 9999999754 33333331 223799999876 78999999999
Q ss_pred EEeeC
Q 000694 1344 KGWIP 1348 (1349)
Q Consensus 1344 rIWD~ 1348 (1349)
.||.+
T Consensus 1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred EEeec
Confidence 99975
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=3.3e-12 Score=160.05 Aligned_cols=253 Identities=17% Similarity=0.214 Sum_probs=167.8
Q ss_pred CceEEEEEeeeeeecccCCCCEEEEEEcC---CEEEEEECCCcEEEEECCC-----CceeEEEEeccCCCcEEEEEEcCC
Q 000694 1051 ISRISCVHTQILEASHKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKK-----QSAMLVWDVKEHRKAVTSFSLFEP 1122 (1349)
Q Consensus 1051 ~~~w~~~~t~tl~~~~gH~~~Vt~Lafsd---g~LaSGS~DGtIrVWDl~t-----g~~~~i~tL~gHss~VtsLafSpd 1122 (1349)
.+.|...... +...+.|...|..++.+. .+++|||.||+|++||... +......++....+.+.++.+.+.
T Consensus 1031 ~~gW~p~G~l-VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1031 PPGWNPRGIL-VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCCCCccceE-eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 3445544443 344578999999999852 3799999999999999863 222233445445678999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCC--eE-E--EEE--EecCCCCeEEec----CCCC-EEEEEecCCeEEEEecCCc-----c
Q 000694 1123 GESLLSGSADKTIGVWQMVQR--KL-E--LIE--VIATKEPIRKLD----TYGK-TIFASTQGHRMKVIDSSRT-----L 1185 (1349)
Q Consensus 1123 g~~LaSGS~DGtIrVWDl~tg--~~-~--~~~--~~~h~~~V~sLs----~~g~-~LvsgS~DgtIkVWDl~~~-----~ 1185 (1349)
|+.+|.|+.||.|++.+++.. .. . +.. -....+.+.++. ..+. .++.++..+.|..||.+.. .
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 999999999999999998762 11 1 111 112233444432 2233 7888888999999999732 2
Q ss_pred eeeccCCCeEEEEe-eCC-EEEEEeCCCcEEEEEccCCccccccccccccc-cCCCCeEEEEEcCCc---eEEEEEec-C
Q 000694 1186 KDIYRSKGIKSMSV-VQG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYKDW---LYSASSSV-E 1258 (1349)
Q Consensus 1186 ~~~~~~~~V~~La~-~dg-~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~-~h~~~I~sL~~~pd~---i~las~S~-d 1258 (1349)
+....+..|+++++ +.+ .++.|+..|.+.+||++-+.. ...|. ++..+|+.+..++-. ...++++. .
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce------eecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 22223334889888 554 455799999999999987742 23443 245777888777542 23333332 4
Q ss_pred CCeEEEEECCCCCeEEEecCC-C------------------CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1259 GSNIKEWRRHRKPQISIAPEK-G------------------TTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1259 DgtIrIWDl~t~~li~tl~gH-~------------------~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
.+.|.+|++.+|.+...+-.. . -......+...+.++.+|+.|+.|+.||..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 678999999888665554322 1 011223334456789999999999999843
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=2.2e-11 Score=142.52 Aligned_cols=265 Identities=11% Similarity=0.142 Sum_probs=168.2
Q ss_pred EEEEECCCcEEEEECCC-CceeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CCeEEEEEEecCCCCeE
Q 000694 1082 LCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMV-QRKLELIEVIATKEPIR 1158 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~t-g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS-~DGtIrVWDl~-tg~~~~~~~~~h~~~V~ 1158 (1349)
+++...|+.|.+||+.+ ++...+..+. +.+....++++|++++|++++ .++.|.+|++. +|...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557799999999964 5555566665 446678899999999987654 58899999996 34442222222222222
Q ss_pred --EecCCCCEEEEEec-CCeEEEEecCCc--c---eeec-cCCCeEEEEe-eCCE-EEE-EeCCCcEEEEEccCCccccc
Q 000694 1159 --KLDTYGKTIFASTQ-GHRMKVIDSSRT--L---KDIY-RSKGIKSMSV-VQGK-IYI-GCMDSSIQELAVSNNVEREI 1226 (1349)
Q Consensus 1159 --sLs~~g~~LvsgS~-DgtIkVWDl~~~--~---~~~~-~~~~V~~La~-~dg~-LlS-Gs~DGsI~IWDl~t~~~~~i 1226 (1349)
.+.++++.+++++. ++.|.+|+++.. . .... ......++.+ ++++ +++ ...++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 35688988888764 788999998621 1 1111 1223566667 6664 544 45679999999976321110
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CC--eEEEecCC------CCCeEEEEEecCCCEEE
Q 000694 1227 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KP--QISIAPEK------GTTIQAMAVVEDFIYLN 1296 (1349)
Q Consensus 1227 ~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t--~~--li~tl~gH------~~~VtsLafSPDg~~La 1296 (1349)
......-...+.....+.++|++.++.+....++.|.+||++. +. .+..+..+ ......+.++|+|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 0000000112344678899999888877665678999999963 32 23333221 12334688999999998
Q ss_pred EEe-CCCcEEEEECCCCc----EEEEEeCCCCeEEEE--EcCCEEEEEEC-CCcEEEee
Q 000694 1297 YNS-SASSLQIWLRGTQQ----KVGRISAGSKITSLL--TANDIVLCGTE-TGLIKGWI 1347 (1349)
Q Consensus 1297 SGS-~DGtVrVWDl~tg~----~l~sl~~hs~VtsLs--~dg~~LaSGS~-DGtIrIWD 1347 (1349)
++. .++.|.+|++.... .+..+..+.....+. ++|++|++++. +++|.+|+
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 886 47899999885433 233333222233444 56888887775 89999995
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.49 E-value=3.3e-12 Score=156.73 Aligned_cols=257 Identities=11% Similarity=0.120 Sum_probs=184.9
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeE-----EEEEEecCCCCeEEec-
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKLD- 1161 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~tg~~-----~~~~~~~h~~~V~sLs- 1161 (1349)
+.+.||++.... .+-..+. -...|+|+.|+|.. ..++.|..+|.|.+||++.+.. .......|..++..+.
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 478999998862 3334443 46789999999876 5677888999999999987654 2333446778887743
Q ss_pred ---CCCCEEEEEecCCeEEEEecCCc-------ce--------eeccCCCeEEEEe---eCCEEEEEeCCCcEEEEEccC
Q 000694 1162 ---TYGKTIFASTQGHRMKVIDSSRT-------LK--------DIYRSKGIKSMSV---VQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1162 ---~~g~~LvsgS~DgtIkVWDl~~~-------~~--------~~~~~~~V~~La~---~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
..+..+++++.||.|..|+++.- .. .......+.++.| ....++.|+.+|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 33466999999999999998721 01 1122234888888 345788999999998744433
Q ss_pred Cccc--cccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCC-CEEE
Q 000694 1221 NVER--EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDF-IYLN 1296 (1349)
Q Consensus 1221 ~~~~--~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~-t~~li~tl~gH~~~VtsLafSPDg-~~La 1296 (1349)
.+.. ....+...+..|..+|+++.++|-....+.++. |.++++|... ...++..+..+...|++++|||.. ..++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 3211 222333455678899999999987655544443 7899999987 667777788788889999999965 5678
Q ss_pred EEeCCCcEEEEECCCC--cEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1297 YNSSASSLQIWLRGTQ--QKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1297 SGS~DGtVrVWDl~tg--~~l~sl~~hs~-VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
++..||.+.+||+... .++.+...+.. .+.+.|+ |+.|++|+..|++.+|+.
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 8888999999997654 34444444444 4555663 889999999999999975
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=144.72 Aligned_cols=235 Identities=14% Similarity=0.153 Sum_probs=170.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCC-------eE-----EEEEEecCCCCeEE---------ecCCCCEEEEEec
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQR-------KL-----ELIEVIATKEPIRK---------LDTYGKTIFASTQ 1172 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg-------~~-----~~~~~~~h~~~V~s---------Ls~~g~~LvsgS~ 1172 (1349)
...+.|+|||..|++-+.|..+++|++... .. ...........|.. ..|+.+.+++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999997421 00 00111122233333 2267788999999
Q ss_pred CCeEEEEecC-CcceeeccC-------CCeEEEEe-eCCEEEEEeCCCcEEEEEc-cCCccccccccc-cccccCCCCeE
Q 000694 1173 GHRMKVIDSS-RTLKDIYRS-------KGIKSMSV-VQGKIYIGCMDSSIQELAV-SNNVEREIKAPF-KSWRLQSKPIN 1241 (1349)
Q Consensus 1173 DgtIkVWDl~-~~~~~~~~~-------~~V~~La~-~dg~LlSGs~DGsI~IWDl-~t~~~~~i~~~l-k~~~~h~~~I~ 1241 (1349)
+.-|++||.- +..+..+.. ....++.| +||.-+.++....|++||+ +.|+........ +--.+....|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999976 343333322 12678888 8998887888999999999 566433222111 11123467789
Q ss_pred EEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CcEEEEEe
Q 000694 1242 SLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGT-QQKVGRIS 1319 (1349)
Q Consensus 1242 sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl~t-g~~l~sl~ 1319 (1349)
+++++|....+.+.+.-+..+-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|+ .|..|..||++. +.++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999998775555444566788888888889999999999999999999999999998 578899999875 45666666
Q ss_pred CCC-----Ce-EEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1320 AGS-----KI-TSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1320 ~hs-----~V-tsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|. +| ..+.+.|++|++|+.||.|++||.
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 432 23 455556899999999999999985
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-12 Score=154.69 Aligned_cols=233 Identities=14% Similarity=0.157 Sum_probs=171.6
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCC-CEEEEEecCCeEEEEe
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYG-KTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g-~~LvsgS~DgtIkVWD 1180 (1349)
-..+.||++.|.+|...|.|.+|++|+.||+||||.+.+|.++..... .+.|.++. +.+ ..+++++.++.+.+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345789999999999999999999999999999999999998765543 34566654 332 2333333333333332
Q ss_pred ---------------------------------cC------Cc-ceeeccCCCeEEEEe-e-CCEEEEEe---CCCcEEE
Q 000694 1181 ---------------------------------SS------RT-LKDIYRSKGIKSMSV-V-QGKIYIGC---MDSSIQE 1215 (1349)
Q Consensus 1181 ---------------------------------l~------~~-~~~~~~~~~V~~La~-~-dg~LlSGs---~DGsI~I 1215 (1349)
-. .. ...+.+.+.|+.+.+ . +.++++.+ ....|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 21 00 112223344777787 3 44555533 3567888
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~L 1295 (1349)
+++....... .|....+.+..+.|||...+++.++ ...|++||+..+.+++.+......|.+++.+|.|..|
T Consensus 551 HQLSK~~sQ~------PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 551 HQLSKRKSQS------PFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred EecccccccC------chhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 8887664321 2334457789999999987777665 6689999998888888887777889999999999999
Q ss_pred EEEeCCCcEEEEECCCC-cEEEEEeCCCC-eEEEEEcCC--EEEEEECCCcEEEe
Q 000694 1296 NYNSSASSLQIWLRGTQ-QKVGRISAGSK-ITSLLTAND--IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg-~~l~sl~~hs~-VtsLs~dg~--~LaSGS~DGtIrIW 1346 (1349)
+.|+.|+.+..+|+.-. ++..++..|.. |++++++++ ++++|+.||++.|+
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999998755 46677777765 899999977 89999999999987
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.48 E-value=8.9e-13 Score=148.73 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=150.1
Q ss_pred eccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc
Q 000694 1107 VKEHRKAVTSFSLFEPG--ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1107 L~gHss~VtsLafSpdg--~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
..+|.+.|+.+.-.+-+ .+.++-+..|.|.|||+...- .+++..+-.+-. +.. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-------------~~l~~~~~~~~~-s~~----------~ 202 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-------------NALSEPGLEVKD-SEF----------R 202 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-------------hhhcCccccccc-ccc----------C
Confidence 34688888888777655 456677889999999984321 111100000000 000 0
Q ss_pred ceeeccCCC--eEEEEe---eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 000694 1185 LKDIYRSKG--IKSMSV---VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 1259 (1349)
Q Consensus 1185 ~~~~~~~~~--V~~La~---~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD 1259 (1349)
....+.++. -..+.| ..|.+++|..-+.|++|...++.-..-. ..+.+|...|-.++++|....+++..+.|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC---ccccccccchhhhccCCccCceEEeeecC
Confidence 111111111 234444 4678899888899999999887533221 23456889999999998855444444468
Q ss_pred CeEEEEECCCC---CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEEEeCCC-CeEEEEEc--
Q 000694 1260 SNIKEWRRHRK---PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT---QQKVGRISAGS-KITSLLTA-- 1330 (1349)
Q Consensus 1260 gtIrIWDl~t~---~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~t---g~~l~sl~~hs-~VtsLs~d-- 1330 (1349)
|+|+|||++.+ .++.+ +.|.+.|+.+.|+.+..+||+|+.||+++|||++. ++++..+..|. +|+++.|+
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 89999999887 44444 78999999999999888999999999999999764 56888888655 59999998
Q ss_pred -CCEEEEEECCCcEEEeeC
Q 000694 1331 -NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1331 -g~~LaSGS~DGtIrIWD~ 1348 (1349)
...|+++|.|.+|.+||.
T Consensus 359 e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cCceEEeccCCCcEEEEEe
Confidence 448999999999999995
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=150.98 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=181.3
Q ss_pred CCCCEEEEEEc-CC--EEEEEECCCcEEEEECCCCceeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1068 CSGAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1068 H~~~Vt~Lafs-dg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs-s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
-.-+|.+.+|. +| .++++|.....+.||+.+.+...+....|+. ..+.....++++++|+..|..|.|.+....++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 35688888884 45 5999999999999999998877777777766 46778888999999999999999999998888
Q ss_pred eEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-cceeeccC-CCeE--EEEe--eCCEEEEEeCCCcEEE
Q 000694 1144 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRS-KGIK--SMSV--VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~-~~V~--~La~--~dg~LlSGs~DGsI~I 1215 (1349)
+.+..... .+.|.. |+.++..+++++.+|.|.+||++. .....+.. ..|. +++. ....+++|+..|.|.|
T Consensus 336 eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 336 ELITSFKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred hhhheeee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 77543333 334444 668899999999999999999984 23333332 2233 3333 3446778999999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEecCC---CCCeEEEEEecC
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEK---GTTIQAMAVVED 1291 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S-~dDgtIrIWDl~t~~li~tl~gH---~~~VtsLafSPD 1291 (1349)
||..+.-...-..|++.+..-...|++++|+++...++.++ ..+..+++-.+.+..+...++.. -+.|+|++|||.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 99876533333344455555567899999999977665443 34567888888776666655532 357999999999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 000694 1292 FIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~ 1310 (1349)
|.++|.|..+|.|.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999864
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.45 E-value=4e-12 Score=139.56 Aligned_cols=263 Identities=13% Similarity=0.121 Sum_probs=189.1
Q ss_pred CEEEEEEc----CC-EEEEEEC----CCcEEEEECC--CCceeEEEEeccCCCcEEEEEEcCCCC-----EEEEEeCCCe
Q 000694 1071 AVTALIYY----KG-LLCSGFS----DGSIKMWDIK--KQSAMLVWDVKEHRKAVTSFSLFEPGE-----SLLSGSADKT 1134 (1349)
Q Consensus 1071 ~Vt~Lafs----dg-~LaSGS~----DGtIrVWDl~--tg~~~~i~tL~gHss~VtsLafSpdg~-----~LaSGS~DGt 1134 (1349)
.+.++.|+ .+ +||.|+. ...|.|-.+. +++.....+ ..|.-+++.+-|.|+.. .|+|++ ..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 46677775 22 5888874 3556655443 444322223 35889999999999873 455544 46
Q ss_pred EEEEEccC--CeEEEE------EEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCc------ceeeccCCCeEEE
Q 000694 1135 IGVWQMVQ--RKLELI------EVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT------LKDIYRSKGIKSM 1197 (1349)
Q Consensus 1135 IrVWDl~t--g~~~~~------~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~------~~~~~~~~~V~~L 1197 (1349)
+|+|.+.. ++.... ....+..++++|. .+.+.+.+.+-|.+..|||+... .+.+.+.+.|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999873 322211 1224566888876 46789999999999999999853 2344556679999
Q ss_pred Ee-e--CCEEEEEeCCCcEEEEEccCCccccccccccccccC-CCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCC-CC
Q 000694 1198 SV-V--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHR-KP 1271 (1349)
Q Consensus 1198 a~-~--dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h-~~~I~sL~~~pd-~i~las~S~dDgtIrIWDl~t-~~ 1271 (1349)
+| . .+.+++.+.||+|++||++.....+|... ... ..+...+++++. ..+++++..+...|.+.|++. ..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEec----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 99 3 34577899999999999999876655211 112 467788888865 456667766778899999976 67
Q ss_pred eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc------EEEEEeCCCCeEEEEEc---CCEEEEEECC
Q 000694 1272 QISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQ------KVGRISAGSKITSLLTA---NDIVLCGTET 1340 (1349)
Q Consensus 1272 li~tl~gH~~~VtsLafSPD-g~~LaSGS~DGtVrVWDl~tg~------~l~sl~~hs~VtsLs~d---g~~LaSGS~D 1340 (1349)
++..+.+|++.|++++|.|. ...|+|+|.|..+.+||+...- ++..+..++.|+.+.|. ++.++.+...
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 88999999999999999995 5689999999999999987532 33344456679999996 6788777643
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=133.25 Aligned_cols=224 Identities=16% Similarity=0.208 Sum_probs=171.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccC---------CeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCC
Q 000694 1113 AVTSFSLFEPGESLLSGSADKTIGVWQMVQ---------RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR 1183 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSGS~DGtIrVWDl~t---------g~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~ 1183 (1349)
.|..-+|+|.+++|+.|+.+|+|-+..+.+ |+.......+|.++|..+..+...+++++. |.|+-|.++.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 455667899999999999999999998854 344444557899999999888888887765 9999998873
Q ss_pred cce-----ee-----------ccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEE
Q 000694 1184 TLK-----DI-----------YRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 1245 (1349)
Q Consensus 1184 ~~~-----~~-----------~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~ 1245 (1349)
... .. ..-..|+++.. ..+.++.++.|+.++.||+.+|+.. +.+++|...+.++..
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~------r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ------REYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE------EEEcCCcceeeeeee
Confidence 111 11 11123777776 4566777779999999999999754 567899999999998
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecCC----------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 000694 1246 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK----------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1246 ~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH----------~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
.....-+++++ +||++++||.++++.+..+... +.+|-+++ -+..++++|+ .-.+.+|++++.++.
T Consensus 165 R~~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RNANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cccCcceeecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCce
Confidence 55544455543 7999999999999988776421 22455555 4567888876 456999999999999
Q ss_pred EEEeCCCCeEEEEEcCCEEEEEECCCcEEEee
Q 000694 1316 GRISAGSKITSLLTANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1316 ~sl~~hs~VtsLs~dg~~LaSGS~DGtIrIWD 1347 (1349)
..+.-..+|..+.|..+.+++|+..+.|.-|.
T Consensus 241 ~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 241 CVFPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred EEEecccceeEeeeecceEEEeccccceeeee
Confidence 99998888999999999888888777776663
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.3e-11 Score=132.67 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=179.8
Q ss_pred CCEEEEEECCCcEEEEECCC---------CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE----
Q 000694 1079 KGLLCSGFSDGSIKMWDIKK---------QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL---- 1145 (1349)
Q Consensus 1079 dg~LaSGS~DGtIrVWDl~t---------g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~---- 1145 (1349)
..++++|..+|+|-+..+++ ++ ..+..+++|.++|..++|. ..+|++|+ ||.|+=|..+....
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLAT 97 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccc
Confidence 34799999999999998853 22 2355678999999999997 55688877 59999998754211
Q ss_pred ---EEEEEecCCC-----CeEE--ecCCCCEEEEEecCCeEEEEecC-CcceeeccCCC--eEEEEe--eCCEEEEEeCC
Q 000694 1146 ---ELIEVIATKE-----PIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG--IKSMSV--VQGKIYIGCMD 1210 (1349)
Q Consensus 1146 ---~~~~~~~h~~-----~V~s--Ls~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~--V~~La~--~dg~LlSGs~D 1210 (1349)
.....+.+.+ .|.+ +.|..+.+++++.|+.++-||++ +..+..+.+|. +.++.. .++.+++|+.|
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCC
Confidence 0011111221 2444 45788889999999999999998 57777777776 888887 77899999999
Q ss_pred CcEEEEEccCCccccccccc---cccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE
Q 000694 1211 SSIQELAVSNNVEREIKAPF---KSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM 1286 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~l---k~~~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsL 1286 (1349)
|++++||.++++...+..+. ...+.+ +..|.+++.+.++..++. +..+.+|+++..++..++. -..++..+
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg----Gp~lslwhLrsse~t~vfp-ipa~v~~v 252 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG----GPKLSLWHLRSSESTCVFP-IPARVHLV 252 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC----CCceeEEeccCCCceEEEe-cccceeEe
Confidence 99999999998755443222 222333 566888888888765443 5689999999988877776 34557777
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--C-CEEEEEECCCcEEEe
Q 000694 1287 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--N-DIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~VtsLs~d--g-~~LaSGS~DGtIrIW 1346 (1349)
.|.. ..+++++..+.|.-|.+. |..-..++.. ...++.+|+ + +++-.++....+.|+
T Consensus 253 ~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 253 DFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 7754 467778878889888764 3333444433 336666665 2 356666666667665
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.7e-13 Score=154.15 Aligned_cols=282 Identities=16% Similarity=0.196 Sum_probs=204.3
Q ss_pred cccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEc
Q 000694 1065 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG--ESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg--~~LaSGS~DGtIrVWDl 1140 (1349)
+.+|.|.|..|.|. +..+++||.|..|.+||...+.. ...-..||...|..-.|-|.. .-+++++.||.|++=.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 57899999999995 44799999999999999998775 223346899888888888754 56999999999998765
Q ss_pred c-CCeEE-EEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcce---eec---cCC---CeEEEEe-e--CCE
Q 000694 1141 V-QRKLE-LIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLK---DIY---RSK---GIKSMSV-V--QGK 1203 (1349)
Q Consensus 1141 ~-tg~~~-~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~~---~~~---~~~---~V~~La~-~--dg~ 1203 (1349)
. +|.+. ...+..|.++|..+. .....+.+++.|+.+.-+|++.... ... ... ....+++ | .+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 4 34443 345567888888754 4566789999999999999873211 111 111 2455565 3 245
Q ss_pred EEEEeCCCcEEEEEccCCcccccccccccc------ccCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCC--C----
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSW------RLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHR--K---- 1270 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~------~~h~~~I~sL~~~-pd~i~las~S~dDgtIrIWDl~t--~---- 1270 (1349)
+++|+.|..+++||.+.-........+..+ ......|+++.++ ..+-.+++.+ |-.|++|...- |
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--De~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--DEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--ccceEEeccccccCCCCC
Confidence 778999999999999765322111111111 1235678889888 4455555554 55688886432 3
Q ss_pred ------CeEEE-ecCCCC--CeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEE
Q 000694 1271 ------PQISI-APEKGT--TIQAMAV-VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCG 1337 (1349)
Q Consensus 1271 ------~li~t-l~gH~~--~VtsLaf-SPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~dg~--~LaSG 1337 (1349)
..+.. ++||.. .|-++-| .|...|+++||.=|.|.||+..+++.+.-+.+.. .|+||.+++. .||+.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 22333 788865 5666654 6899999999999999999999999999888744 5899998866 89999
Q ss_pred ECCCcEEEeeCC
Q 000694 1338 TETGLIKGWIPL 1349 (1349)
Q Consensus 1338 S~DGtIrIWD~L 1349 (1349)
|-|.-|+||.|+
T Consensus 455 Gid~DVKIWTP~ 466 (559)
T KOG1334|consen 455 GIDHDVKIWTPL 466 (559)
T ss_pred CCccceeeecCC
Confidence 999999999884
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=139.00 Aligned_cols=281 Identities=13% Similarity=0.162 Sum_probs=189.2
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCC----CceeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK----QSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~t----g~~~~i~tL-~gHss~VtsLafSpdg~~LaSGS~DGtIrV 1137 (1349)
..+|.+.|+++.|+ ++ +|++|+.|..+++|++.. ..++++... ..|.+.|.|++|...+.++++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 46899999999996 44 699999999999999853 112223322 235689999999999999999999999999
Q ss_pred EEccCCeEEEEEEe-cCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcc---eee---ccCCCeEEEEe-eC--CEEE
Q 000694 1138 WQMVQRKLELIEVI-ATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTL---KDI---YRSKGIKSMSV-VQ--GKIY 1205 (1349)
Q Consensus 1138 WDl~tg~~~~~~~~-~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~---~~~---~~~~~V~~La~-~d--g~Ll 1205 (1349)
.|+.+.+.+..... ...+.|..++ |..+.+++.+.++.|.+||.+... ..+ ..++....+.| |. ..++
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 99999876543322 2234677754 778999999999999999998432 111 12233566666 32 3455
Q ss_pred EEeCCCcEEEEEccCCcccccccc-ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecCCC---
Q 000694 1206 IGCMDSSIQELAVSNNVEREIKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKG--- 1280 (1349)
Q Consensus 1206 SGs~DGsI~IWDl~t~~~~~i~~~-lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l-i~tl~gH~--- 1280 (1349)
+.+..+-+.+||.+.......+.. .+.+........++.|+|++..+.+.- .+..-.+||+.+..+ +..+. |.
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D~~S~R~~V~k~D-~N~~G 289 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFDFISQRCFVLKSD-HNPNG 289 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEeeeecccceeEecc-CCCCc
Confidence 788889999999987643222111 111111123345667887776555432 233455677766433 33332 22
Q ss_pred ----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----------------------cEEEEEeCCCC-eEEEEEc--
Q 000694 1281 ----TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ-----------------------QKVGRISAGSK-ITSLLTA-- 1330 (1349)
Q Consensus 1281 ----~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg-----------------------~~l~sl~~hs~-VtsLs~d-- 1330 (1349)
..+.+++|-.|.. +++|+.+-.|++|.+... ..+..+.+|.. ++.+.|+
T Consensus 290 Y~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred ceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 2466777765544 999999999999975321 12334556665 5777786
Q ss_pred CCEEEEEECCCcEEEeeC
Q 000694 1331 NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1331 g~~LaSGS~DGtIrIWD~ 1348 (1349)
..+|++.+....+++|.+
T Consensus 369 ~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEeccchhhheecccc
Confidence 558889999999999986
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=3.8e-11 Score=135.91 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=171.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCC--eEEEEecCC--cce
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH--RMKVIDSSR--TLK 1186 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~Dg--tIkVWDl~~--~~~ 1186 (1349)
...+..+.|+.+...|..|+.||. +++....-.. +.........|.-.-.....++.++.+. .+++++..+ ..-
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 346777789999999999999995 8887755322 1111111222333335566666666544 488888874 333
Q ss_pred eeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE-ecCCCeEEEE
Q 000694 1187 DIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS-SVEGSNIKEW 1265 (1349)
Q Consensus 1187 ~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~-S~dDgtIrIW 1265 (1349)
.....+.|-++.+...+++++-.+. |++||+++.+.... +..+..+...+..+.+++.+.+++-- +.+.|.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT---I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT---IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehh---hhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 4555666888888777877765554 99999999854321 23444566677778888776666542 2345789999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCC---eEEEEEc--CCEEEEEEC
Q 000694 1266 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAGSK---ITSLLTA--NDIVLCGTE 1339 (1349)
Q Consensus 1266 Dl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGt-VrVWDl~tg~~l~sl~~hs~---VtsLs~d--g~~LaSGS~ 1339 (1349)
|..+-+.+..+..|.+.+-+++|+++|.+|||+|+.|+ |||+.+.+|+.+..+..+.. |.+++|+ +++|++.|.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999887 79999999999999996543 7889985 779999999
Q ss_pred CCcEEEee
Q 000694 1340 TGLIKGWI 1347 (1349)
Q Consensus 1340 DGtIrIWD 1347 (1349)
.++|.||.
T Consensus 239 TeTVHiFK 246 (391)
T KOG2110|consen 239 TETVHIFK 246 (391)
T ss_pred CCeEEEEE
Confidence 99999985
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4.2e-12 Score=142.17 Aligned_cols=257 Identities=10% Similarity=0.105 Sum_probs=176.9
Q ss_pred ceEEEEEee---eeeecccCCCCEEEEEEcC----CEEEEEECCCcEEEEECCCCceeEEEEeccCC-CcEEEEEEcCCC
Q 000694 1052 SRISCVHTQ---ILEASHKCSGAVTALIYYK----GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPG 1123 (1349)
Q Consensus 1052 ~~w~~~~t~---tl~~~~gH~~~Vt~Lafsd----g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs-s~VtsLafSpdg 1123 (1349)
..|.+.... .++.+.+|.+.++.+.|.+ ..+.+|+.||+|++||+++........+.+|. .+-.|++....+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 344544443 4567889999999999932 26999999999999999987655666777777 577788877777
Q ss_pred CEEEEEe----CCCeEEEEEccCCeE-EEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcc------eeec
Q 000694 1124 ESLLSGS----ADKTIGVWQMVQRKL-ELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTL------KDIY 1189 (1349)
Q Consensus 1124 ~~LaSGS----~DGtIrVWDl~tg~~-~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~------~~~~ 1189 (1349)
+.+++|. .|-.|.+||++..+. +......|.+.|+++. .+.+.+++|+.||-|.+||+.+.. ..+.
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN 209 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN 209 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc
Confidence 8888775 477899999998766 5555667889999865 467889999999999999998531 2334
Q ss_pred cCCCeEEEEe-eCC--EEEEEeCCCcEEEEEccCCccccccccccc----cccCCCCeEEEEEc-CC--ceEEEEEecCC
Q 000694 1190 RSKGIKSMSV-VQG--KIYIGCMDSSIQELAVSNNVEREIKAPFKS----WRLQSKPINSLVVY-KD--WLYSASSSVEG 1259 (1349)
Q Consensus 1190 ~~~~V~~La~-~dg--~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~----~~~h~~~I~sL~~~-pd--~i~las~S~dD 1259 (1349)
.+..|.++.| .++ ++++-+..++..+|++..+....-...... .......-+-+..+ |. ..+.+.++ +-
T Consensus 210 ~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~-~~ 288 (376)
T KOG1188|consen 210 HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT-DS 288 (376)
T ss_pred ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc-cc
Confidence 4555999999 666 799999999999999988752211000000 00011111222222 22 23333332 22
Q ss_pred CeEEEEECC---C---CCeEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1260 SNIKEWRRH---R---KPQISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1260 gtIrIWDl~---t---~~li~tl~g-H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
+...++-+. + .+.+..+.+ |..-|+++.|...+.++.|||+||.+.+|..
T Consensus 289 n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 289 NKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 334444332 2 344556665 6678899999999999999999999999974
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=6.5e-11 Score=135.16 Aligned_cols=276 Identities=13% Similarity=0.155 Sum_probs=185.2
Q ss_pred CCCEEEEEEc---CCEEEEEECCCcEEEEECCCC-------ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1069 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQ-------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1069 ~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg-------~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
..+|.++.|. .+.++||+.|..|++|-++.+ +......+..|...|+++.|+|+|+.|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4588889984 237999999999999988542 334456778999999999999999999999999999999
Q ss_pred Ecc--------C-----C--eEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecC-CcceeeccCC--CeEEEE
Q 000694 1139 QMV--------Q-----R--KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSK--GIKSMS 1198 (1349)
Q Consensus 1139 Dl~--------t-----g--~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~--~V~~La 1198 (1349)
... + . -.+.....+|...|.. +.+++..+++++.|+.+++||+. +........+ .+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 865 2 1 1223445567777776 56899999999999999999998 4555554443 377888
Q ss_pred e-eCC-EEEEEeCCCcEEEEEccCCccccc----ccccccccc---------C----CCCeEEEEEcCCceEEEEEec--
Q 000694 1199 V-VQG-KIYIGCMDSSIQELAVSNNVEREI----KAPFKSWRL---------Q----SKPINSLVVYKDWLYSASSSV-- 1257 (1349)
Q Consensus 1199 ~-~dg-~LlSGs~DGsI~IWDl~t~~~~~i----~~~lk~~~~---------h----~~~I~sL~~~pd~i~las~S~-- 1257 (1349)
+ |-+ ++++-+.|...+.+.+........ ..+...... | ....+.+.|.|++..+++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 7 444 444556666666665543321110 000011010 1 223445677788777655321
Q ss_pred --CC----CeEEEEECCC-CCeEEEecCCCCCeEEEEEec------------------CCCEEEEEeCCCcEEEEECCCC
Q 000694 1258 --EG----SNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE------------------DFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1258 --dD----gtIrIWDl~t-~~li~tl~gH~~~VtsLafSP------------------Dg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
.+ ++.++|+-.. .++...+.+...++..+.|+| -+..++.++ ...|.|||.++.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc
Confidence 11 2345555432 455556666666666666655 122344444 567999999999
Q ss_pred cEEEEEeC--CCCeEEEEEc--CCEEEEEECCCcEEE
Q 000694 1313 QKVGRISA--GSKITSLLTA--NDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1313 ~~l~sl~~--hs~VtsLs~d--g~~LaSGS~DGtIrI 1345 (1349)
.++..... -..|+.++|+ |..|+..+.||...+
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99988875 3469999995 669999999996543
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.38 E-value=2.8e-11 Score=134.57 Aligned_cols=254 Identities=14% Similarity=0.192 Sum_probs=179.9
Q ss_pred CEEEEEEc-CC-EEEEEECCCcEEEEECCCC-------ce-----eEEEEeccCCCcEEEEEEc-------CCCCEEEEE
Q 000694 1071 AVTALIYY-KG-LLCSGFSDGSIKMWDIKKQ-------SA-----MLVWDVKEHRKAVTSFSLF-------EPGESLLSG 1129 (1349)
Q Consensus 1071 ~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg-------~~-----~~i~tL~gHss~VtsLafS-------pdg~~LaSG 1129 (1349)
-...+.|+ || -+.+-+.|..+++|++... .. .....+. ....|...+|- |+..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence 34567784 66 5999999999999998421 00 0011111 23467777774 777899999
Q ss_pred eCCCeEEEEEccCCeEEEEEE-ecCCCCeE-----EecCCCCEEEEEecCCeEEEEecCCcc-----ee-ecc----CCC
Q 000694 1130 SADKTIGVWQMVQRKLELIEV-IATKEPIR-----KLDTYGKTIFASTQGHRMKVIDSSRTL-----KD-IYR----SKG 1193 (1349)
Q Consensus 1130 S~DGtIrVWDl~tg~~~~~~~-~~h~~~V~-----sLs~~g~~LvsgS~DgtIkVWDl~~~~-----~~-~~~----~~~ 1193 (1349)
+.|.-|++||.-+|+..+... ..|.+.++ +|+++|..|++| ....|+++|+.+.. .. ..+ ..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999998765432 23444333 377999998866 56899999996321 11 111 122
Q ss_pred -eEEEEe-e-C-CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1194 -IKSMSV-V-Q-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1194 -V~~La~-~-d-g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
+.|+++ | + +.+++|+...++-+|.-.... ++...-+|+..|+.+++++++..+.+++..+..|..||++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~------pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR------PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCC------ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 778888 4 3 356678888888777655443 33455689999999999999999888888888999999976
Q ss_pred -CCeEEEecCCCC-CeEEEEE--ecCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCC-CeEEEEEcCC
Q 000694 1270 -KPQISIAPEKGT-TIQAMAV--VEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGS-KITSLLTAND 1332 (1349)
Q Consensus 1270 -~~li~tl~gH~~-~VtsLaf--SPDg~~LaSGS~DGtVrVWDl~t-g~~l~sl~~hs-~VtsLs~dg~ 1332 (1349)
+.++..+..|.. .-..|-| .|+|++|++|+.||.|++||+++ |..+..+..++ .|+.+++++-
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 666777777765 3334444 58999999999999999999998 66666665544 3788887755
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.38 E-value=1.3e-11 Score=140.08 Aligned_cols=222 Identities=15% Similarity=0.230 Sum_probs=152.9
Q ss_pred ecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCc-----eeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCe
Q 000694 1064 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS-----AMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKT 1134 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~-----~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGt 1134 (1349)
..+||+++|..++|. |..+|+||.|.+|.||++..+- ..++..+.||...|.-++|+|.. +.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 368999999999994 4579999999999999986532 13467889999999999999987 56889999999
Q ss_pred EEEEEccCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCc-ceeeccC-CC---eEEEEeeCCEEEEE
Q 000694 1135 IGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT-LKDIYRS-KG---IKSMSVVQGKIYIG 1207 (1349)
Q Consensus 1135 IrVWDl~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~-~~~~~~~-~~---V~~La~~dg~LlSG 1207 (1349)
|.+||+.+|+.... ..|.+.|.++ ..+|..+++++.|..|+|||.+.. ....... .+ .+.+-..+|.+++.
T Consensus 156 v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeee--cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999987543 3489999884 589999999999999999999843 2222212 22 34444477777764
Q ss_pred e----CCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecC--CC
Q 000694 1208 C----MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPE--KG 1280 (1349)
Q Consensus 1208 s----~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l-i~tl~g--H~ 1280 (1349)
+ .+..+-+||..+....-. ...++. ...|.---+.++...+..++-.|+.|+.|.+....+ ++.+.. ..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~---~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIA---LQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ccccccccceeccCcccccCcce---eEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 3 478899999876532211 011111 233333334455444433445688999999977543 222221 22
Q ss_pred CCeEEEEEecC
Q 000694 1281 TTIQAMAVVED 1291 (1349)
Q Consensus 1281 ~~VtsLafSPD 1291 (1349)
.+-.++.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34455666553
No 179
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.9e-11 Score=129.74 Aligned_cols=240 Identities=12% Similarity=0.160 Sum_probs=154.9
Q ss_pred CceEEEEEeeeeeecccCCCCEEEEEE-cC---CEEEEEECCCcEEEEECC-------CCceeEEEEeccCCCcEEEEEE
Q 000694 1051 ISRISCVHTQILEASHKCSGAVTALIY-YK---GLLCSGFSDGSIKMWDIK-------KQSAMLVWDVKEHRKAVTSFSL 1119 (1349)
Q Consensus 1051 ~~~w~~~~t~tl~~~~gH~~~Vt~Laf-sd---g~LaSGS~DGtIrVWDl~-------tg~~~~i~tL~gHss~VtsLaf 1119 (1349)
...|.|... -..|.+.|..|.| ++ ..+|+++.|+++.||.-. +.+.....++....+.|++|.|
T Consensus 46 s~~W~~Ts~-----Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~F 120 (361)
T KOG2445|consen 46 SGTWSCTSS-----WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKF 120 (361)
T ss_pred CCceEEeee-----EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEe
Confidence 345665554 3579999999999 43 359999999999999752 1234455677788899999999
Q ss_pred cCC--CCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe-cCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEE
Q 000694 1120 FEP--GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL-DTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKS 1196 (1349)
Q Consensus 1120 Spd--g~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL-s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~ 1196 (1349)
.|. |-.+++++.||++|||+.-..--...-...| .+..+ .+-++ ......|
T Consensus 121 aP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~--Ei~~~~~pp~~------------------------~~~~~~C 174 (361)
T KOG2445|consen 121 APKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH--EIQNVIDPPGK------------------------NKQPCFC 174 (361)
T ss_pred cchhcceEEEEeccCcEEEEEecCCccccccchhhh--hhhhccCCccc------------------------ccCcceE
Confidence 986 4579999999999999864321100000000 00000 01000 0011233
Q ss_pred EEe-----eCCEEEEEeCC-----CcEEEEEccCCc--cccccccccccccCCCCeEEEEEcCCc---eEEEEEecCCCe
Q 000694 1197 MSV-----VQGKIYIGCMD-----SSIQELAVSNNV--EREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSN 1261 (1349)
Q Consensus 1197 La~-----~dg~LlSGs~D-----GsI~IWDl~t~~--~~~i~~~lk~~~~h~~~I~sL~~~pd~---i~las~S~dDgt 1261 (1349)
+.+ ....++.|+.+ +.++||....+. ...+ ..+..++.+|+.++|.|+. ..+++....||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 333 12234455544 477888776542 2222 2345789999999999972 23333444577
Q ss_pred EEEEECCCC--------------------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC---CCCcEEEEE
Q 000694 1262 IKEWRRHRK--------------------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR---GTQQKVGRI 1318 (1349)
Q Consensus 1262 IrIWDl~t~--------------------~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl---~tg~~l~sl 1318 (1349)
|+||.+... +.+..+.+|.+.|+.+.|+-.|..|++.|.||.||+|.. +..++...+
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~ 329 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVL 329 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEE
Confidence 999998731 234567899999999999999999999999999999953 234566666
Q ss_pred eCCCCeEE
Q 000694 1319 SAGSKITS 1326 (1349)
Q Consensus 1319 ~~hs~Vts 1326 (1349)
.....|+.
T Consensus 330 ~~e~~~~~ 337 (361)
T KOG2445|consen 330 KAEGSVTK 337 (361)
T ss_pred eccCCCCC
Confidence 65444433
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.37 E-value=7.9e-12 Score=139.26 Aligned_cols=213 Identities=14% Similarity=0.254 Sum_probs=150.4
Q ss_pred ceEEEEEeeeeeecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEE-EeccCCCcEEEEEEcCCCCEEE
Q 000694 1052 SRISCVHTQILEASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVW-DVKEHRKAVTSFSLFEPGESLL 1127 (1349)
Q Consensus 1052 ~~w~~~~t~tl~~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~-tL~gHss~VtsLafSpdg~~La 1127 (1349)
+..+....+......||.+.|+.+.+. ++++++||.|.+||+||+++..+..+. -+.||.+.|.++.|+++|.+++
T Consensus 118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred EEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeee
Confidence 333344444445568999999999995 348999999999999999998773322 2468999999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEE----EE-----------------------EEecCCCCeEEecCCCCEEEEEecCCeEEEEe
Q 000694 1128 SGSADKTIGVWQMVQRKLE----LI-----------------------EVIATKEPIRKLDTYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1128 SGS~DGtIrVWDl~tg~~~----~~-----------------------~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWD 1180 (1349)
|||.|.++++|++...+.. +. ...-|...|.|+..-|+.+++-+.++.|..|.
T Consensus 198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWK 277 (385)
T ss_pred ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEe
Confidence 9999999999999742211 00 11235556666677789999999999999998
Q ss_pred cCC---cceeecc--------------CCCeEEEEe---eC-CEEEEEeCCCcEEEEEccCCccccccccccccccCCCC
Q 000694 1181 SSR---TLKDIYR--------------SKGIKSMSV---VQ-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 1239 (1349)
Q Consensus 1181 l~~---~~~~~~~--------------~~~V~~La~---~d-g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~ 1239 (1349)
... ....... ...+.-+.| +- ..++.|...|.|++||++......... ......+..
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt--l~~s~~~~t 355 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT--LTHSKSGST 355 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce--EEeccccce
Confidence 731 1000100 111444544 22 346679999999999998875432211 111234678
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEEC
Q 000694 1240 INSLVVYKDWLYSASSSVEGSNIKEWRR 1267 (1349)
Q Consensus 1240 I~sL~~~pd~i~las~S~dDgtIrIWDl 1267 (1349)
|+..+++.++.+++... +|++|.-||.
T Consensus 356 VRQ~sfS~dgs~lv~vc-dd~~Vwrwdr 382 (385)
T KOG1034|consen 356 VRQTSFSRDGSILVLVC-DDGTVWRWDR 382 (385)
T ss_pred eeeeeecccCcEEEEEe-CCCcEEEEEe
Confidence 88999999988877654 6889999985
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=8.4e-11 Score=147.77 Aligned_cols=247 Identities=17% Similarity=0.178 Sum_probs=170.4
Q ss_pred EECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccC--Ce---EEEE-EEecCCCCeEE--ecCCC
Q 000694 1094 WDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQ--RK---LELI-EVIATKEPIRK--LDTYG 1164 (1349)
Q Consensus 1094 WDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~t--g~---~~~~-~~~~h~~~V~s--Ls~~g 1164 (1349)
|+.++ ..+..+..|...|..++.++.. .+++|||.||+|++||.+. |. .... ........+.+ ..+.+
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 66654 4577888999999999988665 8999999999999999864 11 1111 11123445555 44889
Q ss_pred CEEEEEecCCeEEEEecCCcc-e-------eec--c--CCCeEEEEe---eCC-EEEEEeCCCcEEEEEccCCccccccc
Q 000694 1165 KTIFASTQGHRMKVIDSSRTL-K-------DIY--R--SKGIKSMSV---VQG-KIYIGCMDSSIQELAVSNNVEREIKA 1228 (1349)
Q Consensus 1165 ~~LvsgS~DgtIkVWDl~~~~-~-------~~~--~--~~~V~~La~---~dg-~LlSGs~DGsI~IWDl~t~~~~~i~~ 1228 (1349)
+.+++++.||.|.+.+++... . ... . +.-|..-++ ... .++.+..-+.|..||++.......
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-- 1188 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-- 1188 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--
Confidence 999999999999999987411 0 000 1 111334344 233 455688899999999987642211
Q ss_pred cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecC---CCEEEEEe--CCC
Q 000694 1229 PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVED---FIYLNYNS--SAS 1302 (1349)
Q Consensus 1229 ~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLafSPD---g~~LaSGS--~DG 1302 (1349)
.......+.|++++.+|.+.+++.++ ..|.+.+||++-+.++..+. ++..+|+.+..+|- ....++++ ..+
T Consensus 1189 --lk~~~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1189 --LKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred --hhcCccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 11233457899999999998888776 46789999999888887665 34567888877763 34555444 578
Q ss_pred cEEEEECCCCcEEEEEeCCCC---------------------eEEEEEc-CCEEEEEECCCcEEEeeC
Q 000694 1303 SLQIWLRGTQQKVGRISAGSK---------------------ITSLLTA-NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1303 tVrVWDl~tg~~l~sl~~hs~---------------------VtsLs~d-g~~LaSGS~DGtIrIWD~ 1348 (1349)
-|.+|++.+|.+...+..... +.|...+ +.++.+|+.|+.|+.||+
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 899999999987776654311 1122223 458999999999999996
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.36 E-value=2.3e-11 Score=143.42 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-------CeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 000694 1237 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-------PQISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-------~li~tl~gH~~~VtsLafSP-Dg~~LaSGS~DGtVrVWD 1308 (1349)
+..|+.+.|.|-.-.-++...+||.|++|.+..+ .+...+++|...|+++.|+| -...|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 4567777777643222223347999999998542 44578889999999999999 457899999999999999
Q ss_pred CCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1309 RGTQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1309 l~tg~~l~sl~~hs~-VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+.+++...++.+|.. |..++|+ |+.+++.+.||+|++|+|
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 999999999998765 9999995 889999999999999986
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=7e-12 Score=147.69 Aligned_cols=239 Identities=10% Similarity=0.156 Sum_probs=165.3
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC------CeE-EEEEEecCCCCeEEec--CCCCEEEEEecCCe
Q 000694 1105 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------RKL-ELIEVIATKEPIRKLD--TYGKTIFASTQGHR 1175 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t------g~~-~~~~~~~h~~~V~sLs--~~g~~LvsgS~Dgt 1175 (1349)
.++..|.+.|+.+.|.|....|++++.||++++|++.. +.. ....+.+|.++|.|+. .++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36678999999999999999999999999999999932 111 1235668999999854 88999999999999
Q ss_pred EEEEecCC-----------cceeeccCCC--eEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCe
Q 000694 1176 MKVIDSSR-----------TLKDIYRSKG--IKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPI 1240 (1349)
Q Consensus 1176 IkVWDl~~-----------~~~~~~~~~~--V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I 1240 (1349)
|+.|++.. .....+.++. |+.+.+ ...++++++.||+++.|+........+..+ . .....
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~----~-e~g~P 442 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP----K-EHGYP 442 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc----c-ccCCc
Confidence 99997651 1122233333 777777 556789999999999999876643211111 1 12223
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 000694 1241 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 1313 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH-------~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~ 1313 (1349)
.++.+-.........+..-+.-.+++...+..+..+... ...+.-+.++|.+.+.+++..|+.|+++|..++.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 444444332111111101112223333333333333211 1356778889999999999999999999999999
Q ss_pred EEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1314 KVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1314 ~l~sl~~hs-~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+++....|- .+++++++ |-+|++|+.||.|++|..
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 998888655 48888875 669999999999999974
No 184
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.4e-11 Score=131.89 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=175.1
Q ss_pred EEEEEeeeeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE-EEEEe
Q 000694 1054 ISCVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGS 1130 (1349)
Q Consensus 1054 w~~~~t~tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~-LaSGS 1130 (1349)
|++.......++.+|..+|+|++|+ +| .|+|+|.|..|.+||+..|.+ ++.+. -.++|+.+.|+|.... .+..-
T Consensus 50 ~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~rir-f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 50 YDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKRIR-FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred EEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeEEE-ccCccceeeeccccCCeEEEEE
Confidence 3333333446678999999999996 56 699999999999999999885 55555 5689999999987643 33333
Q ss_pred CCCeEEEEEccCCeEEEEEE--ecCCCCeEE---ecCCCCEEEEEecCCeEEEEecCCc-ce---eeccCCCeEEEEe--
Q 000694 1131 ADKTIGVWQMVQRKLELIEV--IATKEPIRK---LDTYGKTIFASTQGHRMKVIDSSRT-LK---DIYRSKGIKSMSV-- 1199 (1349)
Q Consensus 1131 ~DGtIrVWDl~tg~~~~~~~--~~h~~~V~s---Ls~~g~~LvsgS~DgtIkVWDl~~~-~~---~~~~~~~V~~La~-- 1199 (1349)
.+..-.+-++..+...+... .+..+.+.+ +...|+++++|...|.+.++|.... .. .+.....|..+.+
T Consensus 127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~ 206 (405)
T KOG1273|consen 127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR 206 (405)
T ss_pred ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec
Confidence 34445555555433211111 111112222 6688999999999999999998742 11 1112234777777
Q ss_pred eCCEEEEEeCCCcEEEEEccCC----cccccccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 000694 1200 VQGKIYIGCMDSSIQELAVSNN----VEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 1274 (1349)
Q Consensus 1200 ~dg~LlSGs~DGsI~IWDl~t~----~~~~i~~~lk~~~~-h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~ 1274 (1349)
.+..++.-+.|..|+.|++..- +........+..+. ....-.+++|+.++.|+++++.....+++|....|.+++
T Consensus 207 ~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 207 KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceee
Confidence 3445667999999999998732 11111000011111 123446778899999999888777889999999999999
Q ss_pred EecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1275 IAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1275 tl~gH~-~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
.+.|.. .....+.|+|-...+++- ..|.|+||...
T Consensus 287 ILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 287 ILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 999877 577889999999888887 68999999744
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=4.9e-11 Score=146.57 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=166.0
Q ss_pred ccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEE----EeccCCCcEEEEEEcCCCC--EEEEEeCCCeEE
Q 000694 1066 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVW----DVKEHRKAVTSFSLFEPGE--SLLSGSADKTIG 1136 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~----tL~gHss~VtsLafSpdg~--~LaSGS~DGtIr 1136 (1349)
..-...|+|+.|+ +..++.|..+|.|.+||+..+...+.. ....|..+|+.+.|..+.. -+++++.||.|.
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 3446789999994 458999999999999999876542111 2246889999999976544 499999999999
Q ss_pred EEEccCCeEEEE-----EEe------cCCCCeEEec---CCCCEEEEEecCCeEEEEecCC---cc------e--eeccC
Q 000694 1137 VWQMVQRKLELI-----EVI------ATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR---TL------K--DIYRS 1191 (1349)
Q Consensus 1137 VWDl~tg~~~~~-----~~~------~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~---~~------~--~~~~~ 1191 (1349)
.|+++.-..... ... .....++++. .+...+++|+.+|.|..-+..+ .. . ...+.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998865322100 000 1112233333 5677899999999987744332 22 1 11122
Q ss_pred CCeEEEEe-e--CCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1192 KGIKSMSV-V--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1192 ~~V~~La~-~--dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
..|.++.+ | ...+++++ |.++++|...... .|+-.+..+...++.++|+|....++.....+|.+.+||+.
T Consensus 399 g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cceEeeecCCCccceeeeec-cceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 33777776 3 22344444 9999999876321 23334555667799999999987776666679999999985
Q ss_pred C--CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000694 1269 R--KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1269 t--~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~t 1311 (1349)
. ..++.+..-+....+.+.|+++|+.|++|...|++.+|++..
T Consensus 473 ~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 473 QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4 445555555566777888999999999999999999999854
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.29 E-value=1.3e-10 Score=132.65 Aligned_cols=241 Identities=12% Similarity=0.204 Sum_probs=160.5
Q ss_pred ecccCCCCEEEEEEc-C-CEEEEEECCCcEEEEECC--------C------CceeEEEEeccCCCcEEEEEEcCCCCEEE
Q 000694 1064 ASHKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIK--------K------QSAMLVWDVKEHRKAVTSFSLFEPGESLL 1127 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs-d-g~LaSGS~DGtIrVWDl~--------t------g~~~~i~tL~gHss~VtsLafSpdg~~La 1127 (1349)
....|...|+++.|+ + +.+|+|+.+|.|.+|... + ......+.+.+|...|..++|+|++.+++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 457899999999996 3 389999999999999876 2 22334567789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC----------------------
Q 000694 1128 SGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR---------------------- 1183 (1349)
Q Consensus 1128 SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~---------------------- 1183 (1349)
+|+.|.++++||+..|.... ....|...+.. +.+.++++++-+.|...+.++..-
T Consensus 140 s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred eeeccceEEEEEeccceeEe-eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 99999999999999998764 55677777765 457778888888777555554431
Q ss_pred cceeeccCCC----eEEEEe-eCCEEEE---Ee--CCCcE-----EEEEccCCccccccccccccccCCCCeEEEEEcC-
Q 000694 1184 TLKDIYRSKG----IKSMSV-VQGKIYI---GC--MDSSI-----QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK- 1247 (1349)
Q Consensus 1184 ~~~~~~~~~~----V~~La~-~dg~LlS---Gs--~DGsI-----~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~p- 1247 (1349)
.....++... ...++| |+|.++. |+ .++.+ ++|+-... ..|.......+.+...+.+.|
T Consensus 219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-----~rP~~~lp~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-----KRPAARLPSPKKPALAVRFSPV 293 (434)
T ss_pred ceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-----cCceeecCCCCcceEEEEeeee
Confidence 0111111111 334455 6776553 22 13333 33322211 112222222333333333332
Q ss_pred -----------------Cc-eEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1248 -----------------DW-LYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1248 -----------------d~-i~las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
.. ++.+++ .+.|.+||.++-.++.... -|-..|+.++|++||.+++..|.||...+-.
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred EEEeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEE
Confidence 11 222322 4589999998866665544 4888999999999999999999999877765
Q ss_pred CCCCc
Q 000694 1309 RGTQQ 1313 (1349)
Q Consensus 1309 l~tg~ 1313 (1349)
.+.++
T Consensus 371 fe~~e 375 (434)
T KOG1009|consen 371 FEPWE 375 (434)
T ss_pred Ecchh
Confidence 55443
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.1e-09 Score=135.15 Aligned_cols=282 Identities=16% Similarity=0.163 Sum_probs=186.2
Q ss_pred cccCCCCEEEEEEcC--CEEEEEECCCcEEEEECCC--CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1065 SHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafsd--g~LaSGS~DGtIrVWDl~t--g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
...|.-.++|.+++. .++|+|..||.|.+|.--. +.....+.+.-|...|++++|+++|.+|+|||..|.+.+|.+
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 456777799999963 3799999999999996433 322234567789999999999999999999999999999999
Q ss_pred cCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCC-----cceeeccC--------CC-eEEEEe-e-CC
Q 000694 1141 VQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-----TLKDIYRS--------KG-IKSMSV-V-QG 1202 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~-----~~~~~~~~--------~~-V~~La~-~-dg 1202 (1349)
.+++ ...++....+|.. ++++++.......|+.|.+..... ....+... .. .+.+.+ | -+
T Consensus 281 ~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 281 ETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred cCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 9988 3677888888887 459999999999999999887641 11111100 11 444455 4 45
Q ss_pred EEEEEeCCCcEEEEEccCCccc-cccccccc-ccc---CCCCeEEEEEcCCceEEEEEec-------CC--CeEEEEECC
Q 000694 1203 KIYIGCMDSSIQELAVSNNVER-EIKAPFKS-WRL---QSKPINSLVVYKDWLYSASSSV-------EG--SNIKEWRRH 1268 (1349)
Q Consensus 1203 ~LlSGs~DGsI~IWDl~t~~~~-~i~~~lk~-~~~---h~~~I~sL~~~pd~i~las~S~-------dD--gtIrIWDl~ 1268 (1349)
.++-.+..|.|.+||+.+.... ++...... .++ +...++.+...-.+.++++.-. .| -.+++|-.+
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 6666888999999999776321 11100000 011 1224455555555666655321 12 257889865
Q ss_pred CCCe----E-EEecCCCCCeEEEEEec-CCC-EEEEEeCCCcEEEEECCCCc------EEEEEe-----CCCCeEEEEEc
Q 000694 1269 RKPQ----I-SIAPEKGTTIQAMAVVE-DFI-YLNYNSSASSLQIWLRGTQQ------KVGRIS-----AGSKITSLLTA 1330 (1349)
Q Consensus 1269 t~~l----i-~tl~gH~~~VtsLafSP-Dg~-~LaSGS~DGtVrVWDl~tg~------~l~sl~-----~hs~VtsLs~d 1330 (1349)
.... . .....|+..+...++.+ ... ..+++|.||.++||-....+ ...... +...+++.+|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 4322 1 22335776665555543 333 78999999999999663222 111111 24458888886
Q ss_pred CC-EEEEEECCCcEEEeeC
Q 000694 1331 ND-IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1331 g~-~LaSGS~DGtIrIWD~ 1348 (1349)
++ .+++.+.|++|.+||+
T Consensus 519 ~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 519 QDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred CCCcEEEEecCCEEEEecC
Confidence 43 5666677889999996
No 188
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=142.03 Aligned_cols=225 Identities=13% Similarity=0.119 Sum_probs=177.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeec-cC
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIY-RS 1191 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~-~~ 1191 (1349)
-..+.++.+|.+++.|+.-|.|-.+|+.++++.+.. .-...|.++. .+...++++.+...++|||-.+....-. ..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 456889999999999999999999999999886543 2334455554 4566677778889999999987554444 44
Q ss_pred CCeEEEEe-eCCEEE-EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1192 KGIKSMSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1192 ~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
..|..+.| |.-.++ +++..|.++.-|+.+|+.. ..+....+.+..+..+|-+-.+..+. .+|+|.+|....
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV------a~~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~s 282 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV------ASIRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPNS 282 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhh------HHHHccCCccchhhcCCccceEEEcC-CCceEEecCCCC
Confidence 55888888 666555 5788999999999999643 22344556777788888765555443 478999999999
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCcEEEee
Q 000694 1270 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1270 ~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~~LaSGS~DGtIrIWD 1347 (1349)
.+++..+-.|.++|.++++.++|+|++|.|.|..++|||++....+.++...-....++++.+-+.+.+....|.||.
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeeh
Confidence 888888888999999999999999999999999999999999888777776555778888877666666777799994
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.27 E-value=5.1e-12 Score=152.95 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=171.9
Q ss_pred eeeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1061 ILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1061 tl~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
.+....||.+.|+.++.+ ++ +++++|.|..|++|.+.++.+ +..+.||++.|++++|+|-. +.+.||++++|
T Consensus 224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p--vsvLrghtgavtaiafsP~~----sss~dgt~~~w 297 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP--VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIW 297 (1113)
T ss_pred hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch--HHHHhccccceeeeccCccc----cCCCCCceEec
Confidence 345678999999999996 44 699999999999999999876 77889999999999999965 78899999999
Q ss_pred EccCCeEEEE---EEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe---eCCEEEEEeCC
Q 000694 1139 QMVQRKLELI---EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV---VQGKIYIGCMD 1210 (1349)
Q Consensus 1139 Dl~tg~~~~~---~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~---~dg~LlSGs~D 1210 (1349)
|.+-.-.... .....+..+.+ +..++..+.+++.|+.-..|.+.... .....+.-+.. .+...+++-.+
T Consensus 298 d~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 298 DARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---WRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred cccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---hhccceEEEeccccccccceeeeee
Confidence 9872111110 00111222333 34677888999999988887764110 00000000111 12344556678
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
-.+.+|++.++... ....+|...+..+.+||-...++-...-||...|||+-.|.+++.+......+...+||+
T Consensus 375 ~~~~vwnl~~g~l~------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLL------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred eEeeeeecccchhh------hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCC
Confidence 88999999998543 234678889999999998766655555688999999988877765543345577889999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
||..++....-|.++|.....++..
T Consensus 449 dgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCceEecCCCCCceEEeccCCCccc
Confidence 9999999888899999877666544
No 190
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.4e-11 Score=154.90 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=150.6
Q ss_pred eecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEe--ccCCCcEEEEEEcCCC-CEEEEEeCCCeEE
Q 000694 1063 EASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPG-ESLLSGSADKTIG 1136 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL--~gHss~VtsLafSpdg-~~LaSGS~DGtIr 1136 (1349)
.....|+|.|..+.|+ ++.||+|+.||.|.|||+.+-+. -.+. ..-.+.|.+++|+..- ..|++|+.+|.+.
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 3457899999999995 44899999999999999987432 1222 2245789999998654 4588999999999
Q ss_pred EEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-eC--CEEEEEeC---C
Q 000694 1137 VWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQ--GKIYIGCM---D 1210 (1349)
Q Consensus 1137 VWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~d--g~LlSGs~---D 1210 (1349)
|||++..+.+. .++..+.. ..+..+.| |+ ..+++++. .
T Consensus 188 iWDlr~~~pii-----------~ls~~~~~-------------------------~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 188 IWDLRKKKPII-----------KLSDTPGR-------------------------MHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred eccccCCCccc-----------ccccCCCc-------------------------cceeeeeeCCCCceeeeeecCCCCC
Confidence 99998765432 22211110 00122223 22 23444333 3
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~-i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
-.|.+||++... .+.+.+.+|...|.++.|.+.. .++++ +..|+.|.+|+.++++.+..+...+.++..+.|.
T Consensus 232 PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 232 PVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred ceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhhc-ccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 468888887652 3456778899999999999776 45554 4578899999999999999999888999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEECCCCc
Q 000694 1290 EDFI-YLNYNSSASSLQIWLRGTQQ 1313 (1349)
Q Consensus 1290 PDg~-~LaSGS~DGtVrVWDl~tg~ 1313 (1349)
|... .+++++.||.|.|+.+..+.
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCC
Confidence 9665 88889999999999876554
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=3e-09 Score=124.62 Aligned_cols=258 Identities=13% Similarity=0.112 Sum_probs=158.4
Q ss_pred CCCEEEEEEc-CC-EEEEE-ECCCcEEEEECC-CCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-
Q 000694 1069 SGAVTALIYY-KG-LLCSG-FSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQ- 1142 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg-~LaSG-S~DGtIrVWDl~-tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~-DGtIrVWDl~t- 1142 (1349)
.+....++++ ++ +|+++ ..++.|.+|++. ++....+.... ..+....++|+|+++++++++. ++.|.+|++++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 4556778885 44 55554 458899999997 44443344333 3345678999999999887764 88999999964
Q ss_pred CeEE-EE-EEecCCCCe-EEecCCCCEEEEEe-cCCeEEEEecCCc--ce-------eeccCCCeEEEEe-eCCE-EEEE
Q 000694 1143 RKLE-LI-EVIATKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSRT--LK-------DIYRSKGIKSMSV-VQGK-IYIG 1207 (1349)
Q Consensus 1143 g~~~-~~-~~~~h~~~V-~sLs~~g~~LvsgS-~DgtIkVWDl~~~--~~-------~~~~~~~V~~La~-~dg~-LlSG 1207 (1349)
+... .. .......+- ..++++++.+++++ .++.|.+||++.. .. ....+.+...+.+ ++|+ ++++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 3211 11 111111221 23678888886655 5589999999742 11 1123444677888 7765 4455
Q ss_pred eC-CCcEEEEEccC--Ccccccccccccccc---CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEec
Q 000694 1208 CM-DSSIQELAVSN--NVEREIKAPFKSWRL---QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAP 1277 (1349)
Q Consensus 1208 s~-DGsI~IWDl~t--~~~~~i~~~lk~~~~---h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~----li~tl~ 1277 (1349)
+. ++.|.+||+.. +....+. ....... +......+.++|++.++.+....++.|.+|++.... .+....
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQ-TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEE-EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 54 89999999974 2221111 0011000 112234588899998888776567899999985432 222222
Q ss_pred CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCc--EEEEEeCCCCeEEEEE
Q 000694 1278 EKGTTIQAMAVVEDFIYLNYNSS-ASSLQIWLRG--TQQ--KVGRISAGSKITSLLT 1329 (1349)
Q Consensus 1278 gH~~~VtsLafSPDg~~LaSGS~-DGtVrVWDl~--tg~--~l~sl~~hs~VtsLs~ 1329 (1349)
. ....+.+.|+|||++|++++. +++|.+|++. ++. .+.++.......++.+
T Consensus 272 ~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 272 T-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred c-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 1 235668999999999998774 8999999764 343 3344433333455543
No 192
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2e-10 Score=130.86 Aligned_cols=253 Identities=12% Similarity=0.131 Sum_probs=181.7
Q ss_pred CCCEEEEEEc-CC--EEEEEE-CCCcEEEEECCCCceeEE----EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1069 SGAVTALIYY-KG--LLCSGF-SDGSIKMWDIKKQSAMLV----WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg--~LaSGS-~DGtIrVWDl~tg~~~~i----~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
...|++++|. ++ -+..+. .|-.+..+.+....+... .+..+.+++|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4577888883 33 244443 666666666655433211 1334556777777753 346888899999999998
Q ss_pred cCCeEE--EEEEecCCCCeEEec---CCCCEEEEEecC--CeEEEEecCCcceeeccCCC-------------eEEEEe-
Q 000694 1141 VQRKLE--LIEVIATKEPIRKLD---TYGKTIFASTQG--HRMKVIDSSRTLKDIYRSKG-------------IKSMSV- 1199 (1349)
Q Consensus 1141 ~tg~~~--~~~~~~h~~~V~sLs---~~g~~LvsgS~D--gtIkVWDl~~~~~~~~~~~~-------------V~~La~- 1199 (1349)
..+... .........++..+. .+...+++|+.. ..+++||+.+. ..++..+. ++++.|
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceec
Confidence 854311 011122223344433 445667778888 78999999876 55554332 566677
Q ss_pred e---CCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-
Q 000694 1200 V---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI- 1275 (1349)
Q Consensus 1200 ~---dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~t- 1275 (1349)
+ ..++++++.-+.+++||.+.++ .|+..+.....++.++...|++.++.++. .-+.+..||.++++....
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCceeeccc
Confidence 2 4578899999999999999774 34456677788999999999988877664 356899999999888766
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 000694 1276 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA 1330 (1349)
Q Consensus 1276 l~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d 1330 (1349)
+.+..+.|+++..+|.+.+++++|-|..|||+|+++.+.+....-.+.++++.+.
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 8889999999999999999999999999999999998888777767777777663
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=5.9e-11 Score=138.70 Aligned_cols=233 Identities=13% Similarity=0.138 Sum_probs=147.2
Q ss_pred ecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEe-ccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 000694 1064 ASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEP--GESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL-~gHss~VtsLafSpd--g~~LaSGS~DGtIrVW 1138 (1349)
...||+|.|+|+.|+ +| +|++||.|-.+.|||.-..+. ++.+ .||.+.|.++.|-|. ++.++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 468999999999995 55 899999999999999986554 4444 689999999999984 4678899999999999
Q ss_pred EccCCe---------EEEEEEecCCCCeEEec--CCC-CEEEEEecCCeEEEEecCCcceee--------cc-C----CC
Q 000694 1139 QMVQRK---------LELIEVIATKEPIRKLD--TYG-KTIFASTQGHRMKVIDSSRTLKDI--------YR-S----KG 1193 (1349)
Q Consensus 1139 Dl~tg~---------~~~~~~~~h~~~V~sLs--~~g-~~LvsgS~DgtIkVWDl~~~~~~~--------~~-~----~~ 1193 (1349)
|+...+ ........|...|..+. +++ +.+++++.||+|+-+|++...... .. . -.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 997521 11112334555666554 444 789999999999999998421110 00 0 12
Q ss_pred eEEEEe-e--CCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 000694 1194 IKSMSV-V--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 1270 (1349)
Q Consensus 1194 V~~La~-~--dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~ 1270 (1349)
..|+.+ | ...+++|+.|-..++||.+.... .+... .... ..| -.+++.|+.|....-
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--------s~~s~--~~~~--~~p--------p~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--------SFRSD--GTMN--TCP--------PKDCRCVRYFSPGHL 262 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhcc--------CCCCC--cccc--CCC--------CcccchhheecCccc
Confidence 667777 3 23566799999999999643310 00110 0000 000 001112222221110
Q ss_pred CeE-EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 000694 1271 PQI-SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1271 ~li-~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl 1318 (1349)
+.. .....-...++-+.|+|+|.-|...-....|+++|+..++....+
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 000000112566889999987776666678999999887755443
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=138.37 Aligned_cols=229 Identities=13% Similarity=0.158 Sum_probs=170.5
Q ss_pred eeecccCCCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1062 LEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
+++..||.+.|.|++|+ +| ++|+|+.|..|.+|+..-.. +-.+ .|++.|.|+.|+|-...|+|++-.. .-+|.
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS 120 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWS 120 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---eeee-ccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence 46678999999999995 55 79999999999999876422 2233 4999999999999999999998653 56898
Q ss_pred ccCCeEEEEEEecCCC--CeE--EecCCCCEEEEEecCCeEEEEecCCcceeecc-----CCCeEEEEe-eC------CE
Q 000694 1140 MVQRKLELIEVIATKE--PIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSV-VQ------GK 1203 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~--~V~--sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~-----~~~V~~La~-~d------g~ 1203 (1349)
...... ..++. .+. ++..+|.+++.|-.+|+|.+-+-.+..+.... +.+|.++++ |. ..
T Consensus 121 ~~qK~V-----~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 121 PEQKSV-----SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred hhhhhH-----HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 755432 12222 222 26789999999999999999887764433322 234888888 32 24
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 1283 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~V 1283 (1349)
+.+..+..++.+|.+......+- +. -+-...++...+++.+++.+++ |+.+++|. +.|-.+.++.....+|
T Consensus 196 ~aV~DW~qTLSFy~LsG~~Igk~----r~---L~FdP~CisYf~NGEy~LiGGs-dk~L~~fT-R~GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQIGKD----RA---LNFDPCCISYFTNGEYILLGGS-DKQLSLFT-RDGVRLGTVGEQDSWI 266 (1081)
T ss_pred EEEEeccceeEEEEecceeeccc----cc---CCCCchhheeccCCcEEEEccC-CCceEEEe-ecCeEEeeccccceeE
Confidence 55678889999888865432211 11 1233467888899999887764 66788886 4466667777778899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1284 QAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1284 tsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
+.++..|++++++.|+.||+|..|++
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhhh
Confidence 99999999999999999999999874
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.8e-10 Score=137.29 Aligned_cols=228 Identities=9% Similarity=0.008 Sum_probs=151.8
Q ss_pred CCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEE-EecCCCCeEEecCC
Q 000694 1088 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIE-VIATKEPIRKLDTY 1163 (1349)
Q Consensus 1088 DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D---GtIrVWDl~tg~~~~~~-~~~h~~~V~sLs~~ 1163 (1349)
++.|.+||..... .+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++..... ..++.. -..++++
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCC
Confidence 5789999998755 34566788899999999999999887654 47999999888643322 222222 2458899
Q ss_pred CCEEEEEe-cCCeEEEE--ecCCcc-eeeccCC-CeEEEEe-eCCE-EEEE-eCCCcEEEEEccCCcccccccccccccc
Q 000694 1164 GKTIFAST-QGHRMKVI--DSSRTL-KDIYRSK-GIKSMSV-VQGK-IYIG-CMDSSIQELAVSNNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1164 g~~LvsgS-~DgtIkVW--Dl~~~~-~~~~~~~-~V~~La~-~dg~-LlSG-s~DGsI~IWDl~t~~~~~i~~~lk~~~~ 1235 (1349)
|+.+++++ .+|.+.+| |+.+.. .....+. .+....| ++|. ++.+ ..+|...+|++....... ... .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-----~~l-~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-----SLV-G 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-----EEe-c
Confidence 99888765 57765555 554332 2222222 2566777 7776 4444 457888888875432110 111 1
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCCc
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GTQQ 1313 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl--~tg~ 1313 (1349)
+.. ....++|++..++..+. + .+.+||+.++........+ ...++.|+|||++|+.++.+|.+.+|.+ .+|.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMING-D-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 111 34678999887766543 3 4667999888654333222 3456789999999999999999988874 4677
Q ss_pred EEEEEeCCC-CeEEEEEcC
Q 000694 1314 KVGRISAGS-KITSLLTAN 1331 (1349)
Q Consensus 1314 ~l~sl~~hs-~VtsLs~dg 1331 (1349)
.+..+.++. .+...+|++
T Consensus 407 ~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred ceEEccCCCCCCCCcccCC
Confidence 888887644 477777765
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.22 E-value=5.2e-11 Score=140.41 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=133.5
Q ss_pred EecCCeEEEEecCC-------cceeeccCCCeEEEEe---eCCEEEEEeCCCcEEEEEccCCcc-ccccccccccccCCC
Q 000694 1170 STQGHRMKVIDSSR-------TLKDIYRSKGIKSMSV---VQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSK 1238 (1349)
Q Consensus 1170 gS~DgtIkVWDl~~-------~~~~~~~~~~V~~La~---~dg~LlSGs~DGsI~IWDl~t~~~-~~i~~~lk~~~~h~~ 1238 (1349)
.+..|.|.||++++ ....++.+..|+.+.| .+.++++++.||.|++|.+..+.. .....+.+.+..|+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45678899999983 2233444555899988 456899999999999999977632 223455667788999
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEE
Q 000694 1239 PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KVGR 1317 (1349)
Q Consensus 1239 ~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~-~l~s 1317 (1349)
.|+++.|||-..-++..+..|.+|++||+.++.....+.+|++.|.+++|||||+.+++.+.||+|+||+-++++ +++.
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 999999999754333333458899999999999999999999999999999999999999999999999877654 4444
Q ss_pred EeC--CCCeEEEE--EcCCEEEEEECCC----cEEEee
Q 000694 1318 ISA--GSKITSLL--TANDIVLCGTETG----LIKGWI 1347 (1349)
Q Consensus 1318 l~~--hs~VtsLs--~dg~~LaSGS~DG----tIrIWD 1347 (1349)
-.+ +.+--.+. .+|+++++.+.|. .|.+||
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 433 22223333 4799888777664 455554
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.21 E-value=7.7e-10 Score=123.47 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=154.3
Q ss_pred CCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCc-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCCe
Q 000694 1069 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM-VQRK 1144 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~-~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl-~tg~ 1144 (1349)
-.+|+|.+|+ |+ .+|.+-....|.||...+.. ....++++.|...|++|+|+|.++.|++|+.|..-.||.. ..++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4799999996 44 59999999999999998877 7788999999999999999999999999999999999998 5555
Q ss_pred EEEEE-EecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCccee-----ec--cCCCeEEEEe-eCCEEE-EEeCCCc
Q 000694 1145 LELIE-VIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD-----IY--RSKGIKSMSV-VQGKIY-IGCMDSS 1212 (1349)
Q Consensus 1145 ~~~~~-~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~-----~~--~~~~V~~La~-~dg~Ll-SGs~DGs 1212 (1349)
..... +..++...++ +++.++.+++|+....|.||-.+++..- +. ....|.++++ +++-++ +|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 43322 2345556665 5688888888888888888877642211 11 1223556665 444433 3555666
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCeEEEecCCCCCeEEEEEec
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~--t~~li~tl~gH~~~VtsLafSP 1290 (1349)
.++|..--. .+.--|. .+ -|+-+ -|+++..+....+.|..+.|+|
T Consensus 170 ~rVfSayIK--------------------~Vdekpa------p~-------pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 170 CRVFSAYIK--------------------GVDEKPA------PT-------PWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred eeEEEEeee--------------------ccccCCC------CC-------CCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 665533111 1110010 00 01111 1344555555678999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEEe-CCCCeEEEEE
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQ-KVGRIS-AGSKITSLLT 1329 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~-~l~sl~-~hs~VtsLs~ 1329 (1349)
+|..|+-.+.|++|.+=|..... .+.... .+-+..++.|
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEe
Confidence 99999999999999999876654 333332 2334455554
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.19 E-value=5.9e-10 Score=122.64 Aligned_cols=216 Identities=9% Similarity=0.075 Sum_probs=146.4
Q ss_pred CCCeEEEEEccC--CeEEEEEEecCCCCeEEec--CCCCE-EEEEecC-------CeEEEEecCCccee-----------
Q 000694 1131 ADKTIGVWQMVQ--RKLELIEVIATKEPIRKLD--TYGKT-IFASTQG-------HRMKVIDSSRTLKD----------- 1187 (1349)
Q Consensus 1131 ~DGtIrVWDl~t--g~~~~~~~~~h~~~V~sLs--~~g~~-LvsgS~D-------gtIkVWDl~~~~~~----------- 1187 (1349)
.|+.|.+.+++. +.+....+.++.+.|..+. |.... +.++..+ ..+.+|.+......
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 356777666554 3444555667777888875 44444 4444331 24779998732211
Q ss_pred --eccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcC--CceEEEEEecCCCeE
Q 000694 1188 --IYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLYSASSSVEGSNI 1262 (1349)
Q Consensus 1188 --~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~p--d~i~las~S~dDgtI 1262 (1349)
......|.|+.| |++.-+++-.|..|.+|++..+.......+...-..+....++-.|+| ++..+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt--~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT--SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe--CCCcE
Confidence 011224899999 877666666699999999987743211111111112334455556666 34444544 38899
Q ss_pred EEEECCCCCeEEEe-cCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCC-eEEEEEc---CCEEE
Q 000694 1263 KEWRRHRKPQISIA-PEKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGT-QQKVGRISAGSK-ITSLLTA---NDIVL 1335 (1349)
Q Consensus 1263 rIWDl~t~~li~tl-~gH~~~VtsLafSPDg~-~LaSGS~DGtVrVWDl~t-g~~l~sl~~hs~-VtsLs~d---g~~La 1335 (1349)
..||+++......+ ..|+..|..+.|+|+.+ +|++||.||.|+|||.+. ..++..+.+|+- |+++.|+ .+.+.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 99999986555444 47899999999999865 578999999999999775 458889988875 9999986 56899
Q ss_pred EEECCCcEEEeeC
Q 000694 1336 CGTETGLIKGWIP 1348 (1349)
Q Consensus 1336 SGS~DGtIrIWD~ 1348 (1349)
+||.|..|.+|..
T Consensus 276 s~~SDs~V~Lsca 288 (370)
T KOG1007|consen 276 SGGSDSAVNLSCA 288 (370)
T ss_pred ecCCCceeEEEec
Confidence 9999999999863
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.2e-10 Score=131.81 Aligned_cols=201 Identities=15% Similarity=0.187 Sum_probs=132.9
Q ss_pred EEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 000694 1073 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 1150 (1349)
Q Consensus 1073 t~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~ 1150 (1349)
.+++|+ +..+++|+.||++|||+..+... +.....|.+.|.++.|+|||+.|++-+.| ..+||++++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 677774 45899999999999999777543 55667899999999999999999999999 89999999985432221
Q ss_pred ecCCCC-eEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcccccc
Q 000694 1151 IATKEP-IRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIK 1227 (1349)
Q Consensus 1151 ~~h~~~-V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~ 1227 (1349)
...+.. ... |..++. . .++++... ....+.|+.||+..-....+.
T Consensus 225 ~~~k~~~~~~cRF~~d~~------~-~~l~laa~-------------------------~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNA------Q-ETLRLAAS-------------------------QFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred CcccchhhhhceecccCC------C-ceEEEEEe-------------------------cCCCCceeEEEeeeecccccc
Confidence 111111 111 111110 0 01111111 111223333333221100000
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000694 1228 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQI 1306 (1349)
Q Consensus 1228 ~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLafSPDg~~LaSGS~DGtVrV 1306 (1349)
+.+........|.++++++++.+++.++. +|.|-+++..+-+.+...+ .|...|+++.|+||.+++++.+.|....|
T Consensus 273 -~~~~~~~~~~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 273 -RLRKKIKRFKSISSLAVSDDGKFLALGTM-DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred -chhhhhhccCcceeEEEcCCCcEEEEecc-CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 00111122467999999999999998775 7899999998876665554 78999999999999999999999998888
Q ss_pred EECC
Q 000694 1307 WLRG 1310 (1349)
Q Consensus 1307 WDl~ 1310 (1349)
..+.
T Consensus 351 ~~l~ 354 (398)
T KOG0771|consen 351 TKLA 354 (398)
T ss_pred EEEe
Confidence 7543
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=5.1e-09 Score=117.05 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=157.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE-EEecCCCCeEEecCCCCEEEEEe-cC------CeEEEEecC--
Q 000694 1113 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKEPIRKLDTYGKTIFAST-QG------HRMKVIDSS-- 1182 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~-~~~~h~~~V~sLs~~g~~LvsgS-~D------gtIkVWDl~-- 1182 (1349)
...+++|+.|...++.|..+| .+||+.+--+.... .....+-.+..+-...+.++..+ .+ +.+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999888888776 69999865221100 11111112222224445554443 33 269999944
Q ss_pred CcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCC-ccccccccccccc--cCCCCeEEEEEcCCceEEEEEecCC
Q 000694 1183 RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN-VEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEG 1259 (1349)
Q Consensus 1183 ~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~-~~~~i~~~lk~~~--~h~~~I~sL~~~pd~i~las~S~dD 1259 (1349)
...........|.++.+..+++++. ..+.|++|...+. +.. +.+. .......+++.+.+..+++--+..-
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l------~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLL------HVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhhe------eeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 2444555566789998877777765 4678999998754 211 1111 1223355665555555555444455
Q ss_pred CeEEEEECCCCCe--EEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEeC---CCCeEEEEEc--C
Q 000694 1260 SNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISA---GSKITSLLTA--N 1331 (1349)
Q Consensus 1260 gtIrIWDl~t~~l--i~tl~gH~~~VtsLafSPDg~~LaSGS~DGt-VrVWDl~tg~~l~sl~~---hs~VtsLs~d--g 1331 (1349)
|.|++-|+...+. ...+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+|+.+..+.. +..|.+++|+ .
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 7899999876444 4778899999999999999999999999998 89999999999999985 3349999986 5
Q ss_pred CEEEEEECCCcEEEeeC
Q 000694 1332 DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1332 ~~LaSGS~DGtIrIWD~ 1348 (1349)
.+|+++|+-|++.|+..
T Consensus 239 s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cEEEEEcCCCeEEEEEe
Confidence 59999999999999853
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.16 E-value=3.5e-10 Score=128.65 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=121.7
Q ss_pred eEEEEe---eCCEEEEEeCCCcEEEEEccCC-ccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1194 IKSMSV---VQGKIYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1194 V~~La~---~dg~LlSGs~DGsI~IWDl~t~-~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
|..++| .|..+++|+.|.+|.+|++..+ .......+...+.+|...|..+++||....++..++.|++|.+||+.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 555666 4566778999999999998765 333344566677899999999999998554444444588999999999
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--eEEEEE--cCCEEEEEE---CCCc
Q 000694 1270 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLT--ANDIVLCGT---ETGL 1342 (1349)
Q Consensus 1270 ~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~--VtsLs~--dg~~LaSGS---~DGt 1342 (1349)
|+.+-++. |..-|+++.|+.||.+++|.+.|..|||||.++++.+..-.+|.. -....| +|+++.+|- .+..
T Consensus 164 geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq 242 (472)
T KOG0303|consen 164 GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQ 242 (472)
T ss_pred CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccc
Confidence 99888887 999999999999999999999999999999999999988865543 333344 577555553 4778
Q ss_pred EEEeeC
Q 000694 1343 IKGWIP 1348 (1349)
Q Consensus 1343 IrIWD~ 1348 (1349)
+-+||+
T Consensus 243 ~aLwdp 248 (472)
T KOG0303|consen 243 IALWDP 248 (472)
T ss_pred eeccCc
Confidence 999986
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=123.78 Aligned_cols=241 Identities=12% Similarity=0.022 Sum_probs=167.3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC------CeEEEEEEecCCCCeEEec--CCCCEEEEEecCCe
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------RKLELIEVIATKEPIRKLD--TYGKTIFASTQGHR 1175 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t------g~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~Dgt 1175 (1349)
.+.+.+|.+.|+++.|+.++++|++||.|..+++|++.. .+.+.....+|...|.++. ..+..+++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345678999999999999999999999999999999853 3344444456767888865 55678899999999
Q ss_pred EEEEecCCcceee-c-cCC---CeEEEEe--eCCEEEEEeCCCcEEEEEccCCcc-ccccccccccccCCCCeEEEEEcC
Q 000694 1176 MKVIDSSRTLKDI-Y-RSK---GIKSMSV--VQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYK 1247 (1349)
Q Consensus 1176 IkVWDl~~~~~~~-~-~~~---~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~-~~i~~~lk~~~~h~~~I~sL~~~p 1247 (1349)
|...|+....... . ... .|..+.. .++.+++.+.+|.|.+||.+.... ... -.....+....++.|||
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~----~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL----VLPANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce----eeecCCCccceeeeecC
Confidence 9999998533222 2 222 3888877 567788899999999999987642 111 01122356778899999
Q ss_pred CceEEEEEecCCCeEEEEECCCC-CeEEEe---cCCC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEe
Q 000694 1248 DWLYSASSSVEGSNIKEWRRHRK-PQISIA---PEKG---TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KVGRIS 1319 (1349)
Q Consensus 1248 d~i~las~S~dDgtIrIWDl~t~-~li~tl---~gH~---~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~-~l~sl~ 1319 (1349)
....++......+-+.+||.+.. ..+... .+-. ..-.++.|+|+|..+.+--....-.+||+.+.. .+..+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 86655555445566999998653 222111 1111 123578899999998887655555677877744 344444
Q ss_pred CC--C-----CeEEEEEcCC-EEEEEECCCcEEEeeC
Q 000694 1320 AG--S-----KITSLLTAND-IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1320 ~h--s-----~VtsLs~dg~-~LaSGS~DGtIrIWD~ 1348 (1349)
+. + .+.+++|-++ .+++|+.+-.|++|..
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCcceeeeeeeeeeeecceeeeccCcccceEEEec
Confidence 32 1 1566777544 7899999999999963
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=8.7e-09 Score=127.39 Aligned_cols=274 Identities=14% Similarity=0.084 Sum_probs=182.3
Q ss_pred CCCEEEEEE-c-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEEccCC
Q 000694 1069 SGAVTALIY-Y-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1069 ~~~Vt~Laf-s-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~---~LaSGS~DGtIrVWDl~tg 1143 (1349)
...+...+. + |+..+.+..+..|.||...++.+ +..+.+|..+++.+.+.|... ++++++.||+|++||...+
T Consensus 15 ~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~--i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGEC--ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccceecccccccCCcEEEEeeCCEEEEEecchHhh--hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 344444444 4 55666677778999999999987 778999999999999987664 6779999999999999998
Q ss_pred eEEEEEEecCCCCeEEec---CCCCEEE-EEecCC------------eEEEEecCC---cceeeccCCC-eEEEEe-eCC
Q 000694 1144 KLELIEVIATKEPIRKLD---TYGKTIF-ASTQGH------------RMKVIDSSR---TLKDIYRSKG-IKSMSV-VQG 1202 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~sLs---~~g~~Lv-sgS~Dg------------tIkVWDl~~---~~~~~~~~~~-V~~La~-~dg 1202 (1349)
.+.........-.+..+. .+....+ .+..+. .++-+.+.. ....+...+. -.++.. +.|
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 876544332221111111 1111111 111111 111111110 0011111111 244555 667
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEecC
Q 000694 1203 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPE 1278 (1349)
Q Consensus 1203 ~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t----~~li~tl~g 1278 (1349)
.+.....+..+.+|+......... ....-..|...+++.++||.+.+++++.. ||.|.+|.--. ....+.+.-
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~--~~~~~~~Htf~~t~~~~spn~~~~Aa~d~-dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTS--SRDITVHHTFNITCVALSPNERYLAAGDS-DGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeec--cchhhhhhcccceeEEeccccceEEEecc-CCcEEEEeccccccccccceEEEe
Confidence 777777788899999887542111 11111235566899999999999998764 57899997432 233456667
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEee
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS~DGtIrIWD 1347 (1349)
|...|.+++|+++|.+|.|||..|.+-+|.+.++++..--+-++.|..+.+ |++..+....|..|.+-.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 889999999999999999999999999999999884333334777887776 577888888899887753
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.12 E-value=1.8e-09 Score=126.78 Aligned_cols=216 Identities=10% Similarity=0.135 Sum_probs=150.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE----EEEecCCCC-eEEe-----cCCCCEEEEEecCCeEEEEecC
Q 000694 1113 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL----IEVIATKEP-IRKL-----DTYGKTIFASTQGHRMKVIDSS 1182 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~----~~~~~h~~~-V~sL-----s~~g~~LvsgS~DgtIkVWDl~ 1182 (1349)
.++...++-.|++|+-.- ...+.+|+.+.+.... ........+ ...+ .+.+-.++.|-..|.+.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 444555555666665432 3457888887543221 111112222 2223 2556667778788888888765
Q ss_pred Cc-cee------eccCCCeEEEEe---eCCEEEEEeCCCcEEEEEccCCc----------------------cccccccc
Q 000694 1183 RT-LKD------IYRSKGIKSMSV---VQGKIYIGCMDSSIQELAVSNNV----------------------EREIKAPF 1230 (1349)
Q Consensus 1183 ~~-~~~------~~~~~~V~~La~---~dg~LlSGs~DGsI~IWDl~t~~----------------------~~~i~~~l 1230 (1349)
.. ... ......|+|+.| .++.+++.-.+|.+++||..-.. ......|+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 31 111 111234899998 45677788889999999763210 01112344
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000694 1231 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~ 1310 (1349)
..|......|+.++|+||+.++++.+ .||.++|||..+.+++..++.--+...|++|||||+||++|++|.-|.||.+.
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 55555566899999999999999886 68899999999988887777667789999999999999999999999999999
Q ss_pred CCcEEEEEeCCC-CeEEEEEc
Q 000694 1311 TQQKVGRISAGS-KITSLLTA 1330 (1349)
Q Consensus 1311 tg~~l~sl~~hs-~VtsLs~d 1330 (1349)
..+.+.+-++|. +|..++||
T Consensus 363 erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceEEEeccccccceeeEeec
Confidence 999999988765 58888887
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=5.7e-10 Score=129.77 Aligned_cols=242 Identities=14% Similarity=0.166 Sum_probs=172.3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ec--CCCCEEEEEecCCeEEEE
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LD--TYGKTIFASTQGHRMKVI 1179 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls--~~g~~LvsgS~DgtIkVW 1179 (1349)
...+.+|.+.|..|.|+..|..|+|||.|..|.+||+..++.......+|...|.. |- .+...+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45678999999999999999999999999999999999988877777777776654 33 345678999999999887
Q ss_pred ecCC-----cceeeccCC-CeEEEEe-eC--CEEEEEeCCCcEEEEEccCCccccccccccccccCC---CCeEEEEEcC
Q 000694 1180 DSSR-----TLKDIYRSK-GIKSMSV-VQ--GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS---KPINSLVVYK 1247 (1349)
Q Consensus 1180 Dl~~-----~~~~~~~~~-~V~~La~-~d--g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~---~~I~sL~~~p 1247 (1349)
.+.. ..+....+. .|.-+++ |+ ..+++++.|+.+.-+|++++....... .+ ..+. -...+++.+|
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr--~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CR--EADEKERVGLYTIAVDP 291 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-ee--ccCCccceeeeeEecCC
Confidence 6552 122233333 3777777 44 468899999999999998874322211 01 1122 2567888898
Q ss_pred CceEEEEEecCCCeEEEEECCCC------CeEEEecCC------CCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCC-
Q 000694 1248 DWLYSASSSVEGSNIKEWRRHRK------PQISIAPEK------GTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GTQ- 1312 (1349)
Q Consensus 1248 d~i~las~S~dDgtIrIWDl~t~------~li~tl~gH------~~~VtsLafSPDg~~LaSGS~DGtVrVWDl--~tg- 1312 (1349)
...+..+.++.|..+++||.+.- .++..+..| ...|++++|+.++.-+.+.-.|-.|+++.. ..|
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 87766555556778999997541 123333322 237999999988877777777888999943 333
Q ss_pred ---------cEEEE-EeCCCC---eEEEEEc---CCEEEEEECCCcEEEeeC
Q 000694 1313 ---------QKVGR-ISAGSK---ITSLLTA---NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1313 ---------~~l~s-l~~hs~---VtsLs~d---g~~LaSGS~DGtIrIWD~ 1348 (1349)
..+.. +++|.. |..+-|- ..++++|+.-|.|.||+-
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 22333 555432 7777764 359999999999999973
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.10 E-value=3.3e-09 Score=124.10 Aligned_cols=252 Identities=18% Similarity=0.191 Sum_probs=167.3
Q ss_pred cCCCCEEEEEEcCC-EEEEEECCCcEEEEE-CCCCceeEEEEeccCCCcE-EEEEEc-------CCCCEEEEEeCCCeEE
Q 000694 1067 KCSGAVTALIYYKG-LLCSGFSDGSIKMWD-IKKQSAMLVWDVKEHRKAV-TSFSLF-------EPGESLLSGSADKTIG 1136 (1349)
Q Consensus 1067 gH~~~Vt~Lafsdg-~LaSGS~DGtIrVWD-l~tg~~~~i~tL~gHss~V-tsLafS-------pdg~~LaSGS~DGtIr 1136 (1349)
.|...|.|+.|... -+...+.|..+.+|. +.+... .+..+. ..-| +.+..- ...+.++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 45666778888644 455556666665554 433221 111111 1111 111111 1234688889999998
Q ss_pred EEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeec--cCCCeEEEEe-eCCEEEEEeCCC
Q 000694 1137 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSV-VQGKIYIGCMDS 1211 (1349)
Q Consensus 1137 VWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~--~~~~V~~La~-~dg~LlSGs~DG 1211 (1349)
+.+- .|+.. .....|.+.+.+ +.++|..+++++.||.|++|.-.+...... ....|.|+++ |+..-+.-|..+
T Consensus 89 il~k-~~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 89 ILNK-SARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred Eecc-cchhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 8764 34432 345567777776 789999999999999999999987665544 3455999999 665433334455
Q ss_pred cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 000694 1212 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1291 (1349)
Q Consensus 1212 sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPD 1291 (1349)
.+.+=-+.... ..-.|..|.+-|.++.|++....+++++ +|-..++||.. |..+..-..|..+|++++|+||
T Consensus 167 h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 167 HISIKPLAANS------KIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred eEEEeeccccc------ceeEEeccCcEEEEeecCccccceeecC-CceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 55554443321 1236899999999999999988887764 78899999976 4555666679999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEE--cCCEEEEEECCCcEEE
Q 000694 1292 FIYLNYNSSASSLQIWLRGTQQKVGRIS--AGSKITSLLT--ANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~tg~~l~sl~--~hs~VtsLs~--dg~~LaSGS~DGtIrI 1345 (1349)
..++.||. ++.| +. .-+.|..++| ||..+++|+..|.+.+
T Consensus 239 -~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 -KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -cceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 55555553 2333 32 2345888888 4889999999997754
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.05 E-value=4e-08 Score=111.85 Aligned_cols=228 Identities=13% Similarity=0.158 Sum_probs=161.3
Q ss_pred CCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEEccCCe
Q 000694 1069 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD--KTIGVWQMVQRK 1144 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D--GtIrVWDl~tg~ 1144 (1349)
...+..+.|+.+ .|..|+.||. ++|+...... ..........|.-+-|+. ..++..+.+ +.+++.++..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 345667777633 5888888885 6787765321 111111223455666654 344444433 458999998888
Q ss_pred EEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc-c-eeec----cCCCeEEEEe-eCC-EEEE-E-eCCCcEE
Q 000694 1145 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT-L-KDIY----RSKGIKSMSV-VQG-KIYI-G-CMDSSIQ 1214 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~-~-~~~~----~~~~V~~La~-~dg-~LlS-G-s~DGsI~ 1214 (1349)
.+|..... ..|.++.-+.+.++++=.+. |+|||++.. . ..+. ...++..+++ .++ +++- + ...|.|.
T Consensus 80 ~ICe~~fp--t~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFP--TSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecC--CceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 87766543 46888888888888776655 999999841 1 1111 2233666666 333 4443 3 3479999
Q ss_pred EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC--CCeEEEEEecCC
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG--TTIQAMAVVEDF 1292 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~--~~VtsLafSPDg 1292 (1349)
+||+.+-+.. ..+..|.+++.++++++++..+++.+..|..||+|.+.+|+.+..|+-.. ..|.+++|+|++
T Consensus 157 l~d~~nl~~v------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 157 LFDTINLQPV------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred EEEcccceee------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 9999876432 34578999999999999999999998777779999999999999887433 378899999999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 000694 1293 IYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl~ 1310 (1349)
++|++.|..++|+||.++
T Consensus 231 ~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLE 248 (391)
T ss_pred CeEEEecCCCeEEEEEec
Confidence 999999999999999754
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.04 E-value=4.2e-09 Score=123.29 Aligned_cols=226 Identities=10% Similarity=0.026 Sum_probs=153.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCC----CCeEEec----CCCCEEEEEecCCeEEEEe
Q 000694 1109 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK----EPIRKLD----TYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~----~~V~sLs----~~g~~LvsgS~DgtIkVWD 1180 (1349)
.|...|.|+.|+.+...+.+++++..+.-||+.+........+... ..+...+ ...+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4777788999988887777666555555556644332211111100 0011111 2345788899999999988
Q ss_pred cCCcceeeccCCC--eEEEEe-eCC-EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEe
Q 000694 1181 SSRTLKDIYRSKG--IKSMSV-VQG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 1256 (1349)
Q Consensus 1181 l~~~~~~~~~~~~--V~~La~-~dg-~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S 1256 (1349)
-.+........|. +.|-.+ ++| -+++++.||.|++|.-...-.. .......+|++++|.|+...++-+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS-------tl~Q~~~~v~c~~W~p~S~~vl~c- 163 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS-------TVVQNEESIRCARWAPNSNSIVFC- 163 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-------HHhhcCceeEEEEECCCCCceEEe-
Confidence 8765555444433 666677 666 4889999999999986544211 113346889999999987655544
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEcCCEEE
Q 000694 1257 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLTANDIVL 1335 (1349)
Q Consensus 1257 ~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~dg~~La 1335 (1349)
.++.+.+=.+.-...+-..+.|.+-|.++.|++....+++||+|-..+|||.. |..+..-.. .-+|++++|+++.++
T Consensus 164 -~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 164 -QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDY 241 (737)
T ss_pred -cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccce
Confidence 26678887777666677788999999999999999999999999999999965 455555444 446999999876444
Q ss_pred EEECCCcEE
Q 000694 1336 CGTETGLIK 1344 (1349)
Q Consensus 1336 SGS~DGtIr 1344 (1349)
.-++-++.|
T Consensus 242 ~v~S~nt~R 250 (737)
T KOG1524|consen 242 LLWSYNTAR 250 (737)
T ss_pred eeeeeeeee
Confidence 433333444
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1e-08 Score=121.31 Aligned_cols=230 Identities=14% Similarity=0.133 Sum_probs=163.7
Q ss_pred cCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE---ecCCCCEEEEEecCCeEEEEecCCc
Q 000694 1109 EHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIRK---LDTYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~L-aSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s---Ls~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
+|...-+.|..+|||+|+ +||..--.|++||+.+-.+. +..+....+.. ++.+-..++..-.|.+|-+....|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999985 57888999999999776543 33333344444 3455556667777777766544332
Q ss_pred ceeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 000694 1185 LKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 1262 (1349)
Q Consensus 1185 ~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtI 1262 (1349)
-..+.-...-..+.+ +...+++++....|+-+++..|+-. ..+......++++.+++-...+++++ .+|.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~V 199 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINEEHGLLACGT-EDGVV 199 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccc------cccccccccceeeeecCccceEEecc-cCceE
Confidence 211111112234444 6667888888889999999988532 23345568899999998877666554 68899
Q ss_pred EEEECCCCCeEEEec------CCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEEEE
Q 000694 1263 KEWRRHRKPQISIAP------EKGT-----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLLT 1329 (1349)
Q Consensus 1263 rIWDl~t~~li~tl~------gH~~-----~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs--~VtsLs~ 1329 (1349)
.+||.++...+.++. .|.+ .|+++.|+.+|-.+++|..+|.|.|||+++.+++..-.+.. +|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999998876655443 2333 49999999999999999999999999999999998877644 4888888
Q ss_pred c----CCEEEEEECCCcEEEeeC
Q 000694 1330 A----NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1330 d----g~~LaSGS~DGtIrIWD~ 1348 (1349)
. ++.+++. ....++|||.
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred cccCCCceEEec-chHHhhhccc
Confidence 3 2345444 4567999985
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=7e-08 Score=117.69 Aligned_cols=230 Identities=9% Similarity=0.082 Sum_probs=145.5
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS---ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 1165 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS---~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~ 1165 (1349)
..|.+||...... +.+..+...+.+.+|+|||+.|+..+ .+..|.+||+.+|+............-..++++|+
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 3789999987654 33445677899999999999888654 34579999998886543221111112245889999
Q ss_pred EEEEE-ecCC--eEEEEecCCc-ceeeccC-CCeEEEEe-eCCE-EEEEeC-CCc--EEEEEccCCcccccccccccccc
Q 000694 1166 TIFAS-TQGH--RMKVIDSSRT-LKDIYRS-KGIKSMSV-VQGK-IYIGCM-DSS--IQELAVSNNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1166 ~Lvsg-S~Dg--tIkVWDl~~~-~~~~~~~-~~V~~La~-~dg~-LlSGs~-DGs--I~IWDl~t~~~~~i~~~lk~~~~ 1235 (1349)
.++.. +.+| .|.+||+.+. ....... ..+....| |+|. ++.++. ++. |+.+|+.++....+ ..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-------t~ 328 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-------TW 328 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-------ec
Confidence 88865 3344 5888998743 3322222 23566777 7776 544544 344 44456666543222 12
Q ss_pred CCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEECC
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS---LQIWLRG 1310 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dD--gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGt---VrVWDl~ 1310 (1349)
.+.......++|++.+++..+.++ ..|.+||+.++... .+... .......|+|||++|+.++.++. +.+|++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 233445678999987776554333 35888999887644 33322 22446789999999999987765 566677
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 000694 1311 TQQKVGRISAG-SKITSLLTAN 1331 (1349)
Q Consensus 1311 tg~~l~sl~~h-s~VtsLs~dg 1331 (1349)
+|.....+.++ +.+...+|++
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 45555666653 4466666764
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.99 E-value=2.9e-08 Score=109.75 Aligned_cols=182 Identities=12% Similarity=0.182 Sum_probs=129.5
Q ss_pred ccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCce-eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEc
Q 000694 1066 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~-~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl 1140 (1349)
..|.+++++..|+ +.++.++|-|.+..|||++++.. .....+-+|.+.|..|+|...+ +.++|.|.||.||++|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 5678899999995 56899999999999999998732 2234567899999999999866 56889999999999999
Q ss_pred cCCeEEEEEEe--cCCCCeEEec---CCCCEEEEEecCC-eEEEEecCC--cceeeccCC--CeEEEEe-e--CCEEEEE
Q 000694 1141 VQRKLELIEVI--ATKEPIRKLD---TYGKTIFASTQGH-RMKVIDSSR--TLKDIYRSK--GIKSMSV-V--QGKIYIG 1207 (1349)
Q Consensus 1141 ~tg~~~~~~~~--~h~~~V~sLs---~~g~~LvsgS~Dg-tIkVWDl~~--~~~~~~~~~--~V~~La~-~--dg~LlSG 1207 (1349)
+.-+-...... ....+...++ .+.+++++...|. .|.+.|++- .......+| .|+.+++ | ..++.++
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 87543211111 1234555555 3456667666554 699999983 222333333 3999999 4 4578889
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 1248 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd 1248 (1349)
++|..+-+||+.+........|.-.+. .+..|+.++|.+.
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSS 346 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhh-ccceeeeeeeccc
Confidence 999999999998764333333433444 4678899988843
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=1.1e-07 Score=106.52 Aligned_cols=270 Identities=17% Similarity=0.211 Sum_probs=181.9
Q ss_pred CCEEEEEEc-CC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeE
Q 000694 1070 GAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1070 ~~Vt~Lafs-dg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~-LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
+.|.-+.|. +. .+...+.|+.|.+|++...+. ...+.....++.+++|+|||+. |.+...|-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 456667774 33 477888999999999998765 5567777889999999999965 55777899999999999877
Q ss_pred EEEEEecCCCCeEEecCCCCEEEEEe------------------------------------cCCeEEEEecCC--ccee
Q 000694 1146 ELIEVIATKEPIRKLDTYGKTIFAST------------------------------------QGHRMKVIDSSR--TLKD 1187 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs~~g~~LvsgS------------------------------------~DgtIkVWDl~~--~~~~ 1187 (1349)
.......+.....++.++|+..+..+ .++.+.|||.-- ....
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 65555556656666778887765543 233455666432 1223
Q ss_pred eccCCCeEEEEe-eCCEEE-EEeCCCcEEEEEccCC---------------ccc----cc------------c-------
Q 000694 1188 IYRSKGIKSMSV-VQGKIY-IGCMDSSIQELAVSNN---------------VER----EI------------K------- 1227 (1349)
Q Consensus 1188 ~~~~~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~---------------~~~----~i------------~------- 1227 (1349)
...+-++..+.+ |-++++ .|+.|+.+++.+--+- +.. +. .
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 333456888888 655554 6999998887553110 000 00 0
Q ss_pred --------------cccc--c------cccCCCCeEEEEEcCCceEEEEEec-CCCeEEEEECCCCCeEEEecCCCCCeE
Q 000694 1228 --------------APFK--S------WRLQSKPINSLVVYKDWLYSASSSV-EGSNIKEWRRHRKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1228 --------------~~lk--~------~~~h~~~I~sL~~~pd~i~las~S~-dDgtIrIWDl~t~~li~tl~gH~~~Vt 1284 (1349)
.+.+ . +......+..++|++|..++++-.. --+.+-+||++..++...+. ...+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcccee
Confidence 0000 0 0001234556788888888887531 11468999998876655444 456899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCc
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGL 1342 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d--g~~LaSGS~DGt 1342 (1349)
...|+|....++.+.....+++|.......+..-..+-.|..+.|. |..++-.+.|..
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999999988888877788999987665555444444568999984 888888888763
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.99 E-value=5.9e-08 Score=108.73 Aligned_cols=230 Identities=11% Similarity=0.159 Sum_probs=155.6
Q ss_pred EEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCC------CeEEEEEccC
Q 000694 1072 VTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSAD------KTIGVWQMVQ 1142 (1349)
Q Consensus 1072 Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~D------GtIrVWDl~t 1142 (1349)
..+++|+.+ -+++|..+| .+||+.+.-+....+.+....-.+.-+-| ..++|+ .||.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 445788633 355555555 69999875221111111111122223333 233444 44433 5799999444
Q ss_pred CeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeec------cCCCeEEEEe-eCCEEEE--EeCCCcE
Q 000694 1143 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY------RSKGIKSMSV-VQGKIYI--GCMDSSI 1213 (1349)
Q Consensus 1143 g~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~------~~~~V~~La~-~dg~LlS--Gs~DGsI 1213 (1349)
.++ ........+|.++....+.++++ ..+.|+||.....++... ..++..++.. .+..+++ |-.-|.|
T Consensus 85 ~~~--i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERC--IIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcE--EEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 444 34445677899988888888776 457899999874332221 1234555554 3334444 6778999
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEEEEecC
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAVVED 1291 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH--~~~VtsLafSPD 1291 (1349)
++-|+...... +......|...|.+++.+.++..+++++..+.-|+|||..+|..+..++.. ...|.+++|||+
T Consensus 162 Qi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999876542 123457899999999999999999999887778999999999999888732 347999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 000694 1292 FIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1292 g~~LaSGS~DGtVrVWDl~t 1311 (1349)
+.+|+++|..|++.||.++.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999996554
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=5.1e-08 Score=118.95 Aligned_cols=228 Identities=13% Similarity=0.068 Sum_probs=143.6
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEEEEEEecCCCC--eEEecCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLELIEVIATKEP--IRKLDTY 1163 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~---DGtIrVWDl~tg~~~~~~~~~h~~~--V~sLs~~ 1163 (1349)
..|.+||..++.. +.+..|...+.+.+|+|||+.|+.++. +..|.+||+.+++..... ...+. ...++++
T Consensus 184 ~~l~i~D~~g~~~---~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYNP---QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCCc---eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCC
Confidence 3689999876543 445567788999999999999987764 346999999888754322 22222 2357899
Q ss_pred CCEEEE-EecCC--eEEEEecCCcceeecc-CCC-eEEEEe-eCCE-EEEEe-CCCc--EEEEEccCCcccccccccccc
Q 000694 1164 GKTIFA-STQGH--RMKVIDSSRTLKDIYR-SKG-IKSMSV-VQGK-IYIGC-MDSS--IQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1164 g~~Lvs-gS~Dg--tIkVWDl~~~~~~~~~-~~~-V~~La~-~dg~-LlSGs-~DGs--I~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
|+.++. .+.+| .|++||+.+....... ... .....| ++|. ++.++ .+|. |+++|+.++....+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l------- 331 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL------- 331 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-------
Confidence 988764 45555 5999998753322222 222 345677 7775 55444 3444 66667766643322
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWL 1308 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D---GtVrVWD 1308 (1349)
..++.......++|++.+++..+.+++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.+.+++
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 112233446789999887765543333 6999999887655 333 23345567899999988776653 3577777
Q ss_pred CCCCcEEEEEeC-CCCeEEEEEcC
Q 000694 1309 RGTQQKVGRISA-GSKITSLLTAN 1331 (1349)
Q Consensus 1309 l~tg~~l~sl~~-hs~VtsLs~dg 1331 (1349)
... .....+.. .+.+...+|++
T Consensus 410 ~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCC-CceEEcccCCCCCCCCccCC
Confidence 744 44555543 33455555543
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=2.7e-08 Score=121.28 Aligned_cols=211 Identities=12% Similarity=0.072 Sum_probs=137.8
Q ss_pred cccCCCCEEEEEEc-CC-EEEEEECC---CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 000694 1065 SHKCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVW 1138 (1349)
Q Consensus 1065 ~~gH~~~Vt~Lafs-dg-~LaSGS~D---GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS-~DGtIrVW 1138 (1349)
...|.+.|.+.+|+ +| +++.++.+ ..|++||+.+++...+..+.+|. ..++|+|||+.|+.++ .+|.+.||
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEE
Confidence 35677889999995 55 57766544 37999999988765555566554 3689999999888654 68876665
Q ss_pred --EccCCeEEEEEEecCCCCe--EEecCCCCEEEEEe-cCCeEEEEecC--CcceeeccCCCeEEEEe-eCCEEE-EEeC
Q 000694 1139 --QMVQRKLELIEVIATKEPI--RKLDTYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSKGIKSMSV-VQGKIY-IGCM 1209 (1349)
Q Consensus 1139 --Dl~tg~~~~~~~~~h~~~V--~sLs~~g~~LvsgS-~DgtIkVWDl~--~~~~~~~~~~~V~~La~-~dg~Ll-SGs~ 1209 (1349)
|+.++.... ...+...+ ..++++|..+++++ .++...+|+++ +.......... .+..+ |+|..+ .++.
T Consensus 276 ~~d~~~~~~~~--lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 276 VMGANGGTPSQ--LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCeEe--eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcC
Confidence 665665432 23333333 34789999877665 56778888764 22222222222 34556 776544 4555
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC--CCCCeEEEecCCCCCeEEEE
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR--HRKPQISIAPEKGTTIQAMA 1287 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl--~t~~li~tl~gH~~~VtsLa 1287 (1349)
+ .+..||+.++....+.. . ....+..++|++.+++..+. ++.+.+|++ .+|.....+.+|.+.+...+
T Consensus 353 ~-~i~~~Dl~~g~~~~lt~------~--~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ 422 (429)
T PRK01742 353 D-NVVKQDLTSGSTEVLSS------T--FLDESPSISPNGIMIIYSST-QGLGKVLQLVSADGRFKARLPGSDGQVKFPA 422 (429)
T ss_pred C-CEEEEECCCCCeEEecC------C--CCCCCceECCCCCEEEEEEc-CCCceEEEEEECCCCceEEccCCCCCCCCcc
Confidence 5 46669998875332211 1 11245679999988877664 555666664 35778888888888899999
Q ss_pred EecC
Q 000694 1288 VVED 1291 (1349)
Q Consensus 1288 fSPD 1291 (1349)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9984
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.5e-07 Score=114.86 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=143.5
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEEEEEEecCCCCeE--EecCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLELIEVIATKEPIR--KLDTY 1163 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~---DGtIrVWDl~tg~~~~~~~~~h~~~V~--sLs~~ 1163 (1349)
..|.+||..+... +.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+|+... ...+.+.+. .++++
T Consensus 182 ~~l~~~d~dg~~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--VGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--eecCCCcccCcEECCC
Confidence 4788999876553 456678889999999999999887653 4689999998887532 233333333 47899
Q ss_pred CCEEE-EEecCCe--EEEEecCCcceeecc-CCC-eEEEEe-eCCE-EEEEeC-C--CcEEEEEccCCcccccccccccc
Q 000694 1164 GKTIF-ASTQGHR--MKVIDSSRTLKDIYR-SKG-IKSMSV-VQGK-IYIGCM-D--SSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1164 g~~Lv-sgS~Dgt--IkVWDl~~~~~~~~~-~~~-V~~La~-~dg~-LlSGs~-D--GsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
|+.++ +.+.++. |.+||+.+....... ... .....+ ++|. ++.++. + ..|++||+.++....+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l------- 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI------- 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-------
Confidence 98876 4455554 777788753322222 222 445667 7775 444442 3 3688888876644322
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQ 1305 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dD--gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D------GtVr 1305 (1349)
..+...+....++|++..++....++ ..|.+||..++.. ..+. ....+....|+|||++|+..+.+ ..+.
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 11233455678999988776554333 3688899865543 3333 23356788999999998765543 2466
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEcC
Q 000694 1306 IWLRGTQQKVGRISAGSKITSLLTAN 1331 (1349)
Q Consensus 1306 VWDl~tg~~l~sl~~hs~VtsLs~dg 1331 (1349)
++|+..+.. ..+...+.+...+|++
T Consensus 408 ~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEccCCCCccCcccCC
Confidence 778766544 3444333344445543
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.97 E-value=4.6e-09 Score=114.73 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=152.3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecC
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS 1182 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~ 1182 (1349)
...+.+|.+.|+++.|..++. |++|..-|.|++|++.+..........+...|+.+. ..++.+.+-+.|+.+.+|++.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 566779999999999987765 999999999999999887766544446777788865 344788999999999999997
Q ss_pred CcceeeccCCCeEEEEe------eCCE----EE-EE--eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEc--C
Q 000694 1183 RTLKDIYRSKGIKSMSV------VQGK----IY-IG--CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY--K 1247 (1349)
Q Consensus 1183 ~~~~~~~~~~~V~~La~------~dg~----Ll-SG--s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~--p 1247 (1349)
.......+.-.++++.| ++++ ++ .- +.|. +++-|........+... .-....+.+.+..+. .
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd--~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADD--SERSKLGSVMCQDKDHAC 162 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCc--hhccccCceeeeeccccc
Confidence 52222111112233332 1111 11 10 0011 22222221111111111 112233445555422 2
Q ss_pred CceEEEEEecCCCeEEEEECCCC----------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--cEE
Q 000694 1248 DWLYSASSSVEGSNIKEWRRHRK----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ--QKV 1315 (1349)
Q Consensus 1248 d~i~las~S~dDgtIrIWDl~t~----------~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg--~~l 1315 (1349)
...+++..+.++|.+.+||+.++ +.......|..+|.++.|.+....=++|+.+..+..|++... ...
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 23444445568899999999987 334445568899999999987777788898999999966533 222
Q ss_pred --EEEeC-CCCe--EEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1316 --GRISA-GSKI--TSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1316 --~sl~~-hs~V--tsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
..+.- +..| ..+.+|++.+|++|+||+||||+.
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence 11111 3334 456679999999999999999864
No 218
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=3e-07 Score=109.87 Aligned_cols=255 Identities=16% Similarity=0.154 Sum_probs=161.4
Q ss_pred EEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCC
Q 000694 1075 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK 1154 (1349)
Q Consensus 1075 Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~ 1154 (1349)
....++.++.++.||.+..||..+|+. +...... +.+.+.-.. .+..++.++.||.+..||..+|+..........
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKE--LWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcE--eeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 445678899999999999999999875 3333321 222221111 345677788899999999999987654322111
Q ss_pred CC-e---EEecCCCCEEEEEecCCeEEEEecCC-cceeecc---CC---C------e-EEEEeeCCEEEEEeCCCcEEEE
Q 000694 1155 EP-I---RKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR---SK---G------I-KSMSVVQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1155 ~~-V---~sLs~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~---~~---~------V-~~La~~dg~LlSGs~DGsI~IW 1216 (1349)
.. . .+....++.++++..++.+..+|... ...-... .. . + ....+.++.+++++.+|.++.|
T Consensus 177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 00 0 01111235677888889999888752 2211100 00 0 1 1112357888999999999999
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC-CeEEEEEecCCCEE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT-TIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~-~VtsLafSPDg~~L 1295 (1349)
|..+++. .|..............+.+++.+ .+|.+..+|..+++.+........ ...+... .+..+
T Consensus 257 d~~tG~~--------~W~~~~~~~~~p~~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l 323 (377)
T TIGR03300 257 DLRSGRV--------LWKRDASSYQGPAVDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYL 323 (377)
T ss_pred ECCCCcE--------EEeeccCCccCceEeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEE
Confidence 9998853 23222112223334444454443 478999999999887765532221 1222222 46788
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCC-Ce-EEEEEcCCEEEEEECCCcEEEe
Q 000694 1296 NYNSSASSLQIWLRGTQQKVGRISAGS-KI-TSLLTANDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg~~l~sl~~hs-~V-tsLs~dg~~LaSGS~DGtIrIW 1346 (1349)
++++.||.|++||..+|+.+.++..+. .+ .+-...++.|+.++.||.|+.|
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 899999999999999999999988644 33 3444556779999999999875
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=5.4e-07 Score=107.74 Aligned_cols=259 Identities=14% Similarity=0.121 Sum_probs=153.1
Q ss_pred EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec
Q 000694 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD 1161 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs 1161 (1349)
+++-..+|.|.|.|..+.+. +.++..+...-..+.|+|||+++++++.||.|.++|+.+++.+.....+....-..++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 45667789999999999765 7777755444456789999999999999999999999999877655444333333477
Q ss_pred CCCCEEEEEe-cCCeEEEEecCC-c-ceeecc--------CCCeEEEEe-eCC-EEEEEe-CCCcEEEEEccCCcccccc
Q 000694 1162 TYGKTIFAST-QGHRMKVIDSSR-T-LKDIYR--------SKGIKSMSV-VQG-KIYIGC-MDSSIQELAVSNNVEREIK 1227 (1349)
Q Consensus 1162 ~~g~~LvsgS-~DgtIkVWDl~~-~-~~~~~~--------~~~V~~La~-~dg-~LlSGs-~DGsI~IWDl~t~~~~~i~ 1227 (1349)
++|++++++. ..+.+.++|... . ...+.. ...+..+.. +.+ .++..- ..+.|.+.|..+......
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~- 165 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV- 165 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-
Confidence 9999988775 678999999863 2 222111 112445544 333 344443 457787778766532111
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-----------------------------------
Q 000694 1228 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ----------------------------------- 1272 (1349)
Q Consensus 1228 ~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l----------------------------------- 1272 (1349)
+. ...+.......+.|++.+++......+.|-++|..+++.
T Consensus 166 ---~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 166 ---TT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp ---EE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ---ee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 01 112344555667777665544433344555555544433
Q ss_pred --------------------EEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEECCCCcEEEEEeC--CCCeEE
Q 000694 1273 --------------------ISIAPEKGTTIQAMAVVEDFIYLNYN----SSASSLQIWLRGTQQKVGRISA--GSKITS 1326 (1349)
Q Consensus 1273 --------------------i~tl~gH~~~VtsLafSPDg~~LaSG----S~DGtVrVWDl~tg~~l~sl~~--hs~Vts 1326 (1349)
++.+...+.+ .-+..+|++++++.. ...++|.|+|..+.+.+.++.. +.++..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 3333332333 455668999999988 4558999999999988888874 334778
Q ss_pred EEEc--CCEEEEEEC--CCcEEEeeC
Q 000694 1327 LLTA--NDIVLCGTE--TGLIKGWIP 1348 (1349)
Q Consensus 1327 Ls~d--g~~LaSGS~--DGtIrIWD~ 1348 (1349)
+.|+ |+.+..+.. +|.|.|||.
T Consensus 321 ~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 321 MEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cEECCCCCEEEEEEecCCCEEEEEEC
Confidence 8875 775544443 446999985
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.7e-07 Score=111.15 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=178.9
Q ss_pred ccCCCCEEEEEEc-CC-E-EEEEECCCcEEEEECCCCceeEEEEeccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1066 HKCSGAVTALIYY-KG-L-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~-LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs--s~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
.+|...-+.|..+ || + +|||.+--.|++||+.+-.. .|.-|. ..|.-.-.+.|-..++---.|.+|-+..-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL----KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL----KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEccccee----eeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 4677888888885 56 4 99999999999999987543 233343 35555556666666666677888776543
Q ss_pred cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCC-cceeecc--CCCeEEEEe--eCCEEEEEeCCCcEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR--SKGIKSMSV--VQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~--~~~V~~La~--~dg~LlSGs~DGsI~I 1215 (1349)
.|.-..... +..+.-.++.....-+++++.+..|+-++++. .....+. ...++++.+ .+|.+++|+.||.|.+
T Consensus 124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred -cCeeeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 232211111 11111112332333456666667777778773 3222222 234778877 5677778999999999
Q ss_pred EEccCCcccc-ccccccccccC-----CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEE
Q 000694 1216 LAVSNNVERE-IKAPFKSWRLQ-----SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAV 1288 (1349)
Q Consensus 1216 WDl~t~~~~~-i~~~lk~~~~h-----~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLaf 1288 (1349)
||.++..... +..... ...+ ...|+++.|..++..++.+. ..|.+.|||+++.+++..-. +...+|..+.|
T Consensus 202 wDpR~ksrv~~l~~~~~-v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASS-VNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred ecchhhhhheeeecccc-cCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 9998864322 111111 1222 34589999999988887766 46799999999877654433 23458899999
Q ss_pred ecC--CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEEe
Q 000694 1289 VED--FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1289 SPD--g~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs--~dg~~LaSGS~DGtIrIW 1346 (1349)
.+. +..++|. ....++|||-.+|+....+.....++.++ +++.++++|-+++.+..|
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 775 4556665 45789999999999999998766676665 467799999888876544
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=8.7e-08 Score=109.76 Aligned_cols=230 Identities=10% Similarity=0.109 Sum_probs=163.0
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCeEEEE-----EEecCCCCeEEecCCCCEEEEEecCCeEEEEecC
Q 000694 1110 HRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRKLELI-----EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS 1182 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~--~LaSGS~DGtIrVWDl~tg~~~~~-----~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~ 1182 (1349)
....|++++|.-+++ .+...+.|..+...++..+.+... .......+|..+...+..++++..+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 345677777765553 455454666666666655443322 2334556677777778899999999999999887
Q ss_pred C------cceeeccCCCeEEEEe--eCCEE-EEEeCC--CcEEEEEccCCccccccccccccccC-----------CCCe
Q 000694 1183 R------TLKDIYRSKGIKSMSV--VQGKI-YIGCMD--SSIQELAVSNNVEREIKAPFKSWRLQ-----------SKPI 1240 (1349)
Q Consensus 1183 ~------~~~~~~~~~~V~~La~--~dg~L-lSGs~D--GsI~IWDl~t~~~~~i~~~lk~~~~h-----------~~~I 1240 (1349)
. .......+.++..+.- ....+ ++|+.. ..+.+||+.+.+. .|... .-.+
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--------iw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--------IWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee--------eeeccCCCCccccceeeeee
Confidence 2 2233334455665554 22334 458888 8999999988731 22221 2234
Q ss_pred EEEEEcCC--ceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000694 1241 NSLVVYKD--WLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR 1317 (1349)
Q Consensus 1241 ~sL~~~pd--~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~s 1317 (1349)
+.+.|-++ ...+++++ .-+.+++||.+. .+++..+.--..+++++...|+|+++++|..-|.+..||.+.+.....
T Consensus 206 tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ccceecCCCCCceEEEEe-cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 55666665 44444443 345899999976 577888887888999999999999999999999999999999998877
Q ss_pred -EeC-CCCeEEEEEcCC--EEEEEECCCcEEEeeC
Q 000694 1318 -ISA-GSKITSLLTAND--IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1318 -l~~-hs~VtsLs~dg~--~LaSGS~DGtIrIWD~ 1348 (1349)
+.+ .+.|.++..++. +++++|-|..+||+|.
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 665 556999987754 9999999999999985
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2.9e-07 Score=112.27 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=138.1
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEecCCCCeEEecCCCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 1165 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D---GtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~ 1165 (1349)
..|.+||..+.. ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+|+...............++++|+
T Consensus 176 ~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 467788876544 23455678889999999999998876643 469999999887643221111112235789999
Q ss_pred EEEE-EecCCeEEEEec--CCc-ceeeccCC-CeEEEEe-eCCE-EEEEe-CCCcEEEEEcc--CCcccccccccccccc
Q 000694 1166 TIFA-STQGHRMKVIDS--SRT-LKDIYRSK-GIKSMSV-VQGK-IYIGC-MDSSIQELAVS--NNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1166 ~Lvs-gS~DgtIkVWDl--~~~-~~~~~~~~-~V~~La~-~dg~-LlSGs-~DGsI~IWDl~--t~~~~~i~~~lk~~~~ 1235 (1349)
.++. .+.+|...+|.+ .+. ...+.... ......| +||+ ++..+ .+|...+|.+. ++....+ ..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-------t~ 325 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-------TF 325 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------ec
Confidence 8864 567776666654 432 22222222 2445667 7775 44444 35666666553 4332221 11
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-c--EEEEECC
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-S--LQIWLRG 1310 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DG-t--VrVWDl~ 1310 (1349)
.+.......++|++.+++..+..++ .|.+||+.++.... +..+ .......|+|||++|+.++.++ . +.+.+.
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 2223345789999888775544333 69999998876543 3322 3346789999999988877544 3 333355
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 000694 1311 TQQKVGRISAG-SKITSLLTAN 1331 (1349)
Q Consensus 1311 tg~~l~sl~~h-s~VtsLs~dg 1331 (1349)
+|.....+..+ +.+...+|++
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCceEEeecCCCCCCCCccCC
Confidence 45555555533 3355555553
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=6.9e-08 Score=108.77 Aligned_cols=268 Identities=14% Similarity=0.169 Sum_probs=167.1
Q ss_pred CCCEEEEEEc--CCEEEEEECCCcEEEEECCC---CceeEEEEeccCC------------CcEEEEEEcCCCC--EEEEE
Q 000694 1069 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKK---QSAMLVWDVKEHR------------KAVTSFSLFEPGE--SLLSG 1129 (1349)
Q Consensus 1069 ~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~t---g~~~~i~tL~gHs------------s~VtsLafSpdg~--~LaSG 1129 (1349)
.+-|.+|.|. +.+||||..+|.|.++.-.. ++......++.|. ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678899994 55899999999999997543 2222344555554 4688899998774 46667
Q ss_pred eCCCeEEEEEccCCeEEEEE----EecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeecc-C--CCeEEEEe-eC
Q 000694 1130 SADKTIGVWQMVQRKLELIE----VIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-S--KGIKSMSV-VQ 1201 (1349)
Q Consensus 1130 S~DGtIrVWDl~tg~~~~~~----~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~-~--~~V~~La~-~d 1201 (1349)
+.|++|++|.+......... .......++++. ..+.+..+-.+ . ..+...+. . ..|.++.+ .|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr----~p~~~~~~~~v-e----a~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR----LPVEGRHDLEV-E----ASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceee----ceeecccccee-e----eeeeeeccccceeEeeeeeecCc
Confidence 78999999998654322100 001111122211 00001111000 0 01122222 2 23889999 77
Q ss_pred CEEEEEeCCCcEEEEEccCC-ccccc--cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE----E
Q 000694 1202 GKIYIGCMDSSIQELAVSNN-VEREI--KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI----S 1274 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~-~~~~i--~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li----~ 1274 (1349)
+..+...+|=.|.+|++.-. +.-.+ ..|. .+..-...|++..|||........++..|+|++.|++...+- +
T Consensus 176 ~Et~lSADdLRINLWnlei~d~sFnIVDIKP~-nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSADDLRINLWNLEIIDQSFNIVDIKPA-NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeeccceeeeeccccccCCceeEEEcccc-CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 77777788999999998532 11111 0010 001113568888999987777777777899999999742110 1
Q ss_pred Ee------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCcEEEEEeCCC-------------Ce---E
Q 000694 1275 IA------------PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR-GTQQKVGRISAGS-------------KI---T 1325 (1349)
Q Consensus 1275 tl------------~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl-~tg~~l~sl~~hs-------------~V---t 1325 (1349)
.+ .+--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|. .| .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 11 111236889999999999998642 68999998 4566777776442 23 4
Q ss_pred EEEEcCC--EEEEEECCCcEEEee
Q 000694 1326 SLLTAND--IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1326 sLs~dg~--~LaSGS~DGtIrIWD 1347 (1349)
.++|+|+ .+++|+.....++++
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEEEcCCcceEecccccceEEEec
Confidence 4568776 999999999999987
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=6e-08 Score=112.16 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=126.5
Q ss_pred CeEEecCCCCEEEEEecCCeEEEEecCCc---ceeeccCCCeEEEEe-eCCEEE-EEeCCCcEEEEEccCCccccccccc
Q 000694 1156 PIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYRSKGIKSMSV-VQGKIY-IGCMDSSIQELAVSNNVEREIKAPF 1230 (1349)
Q Consensus 1156 ~V~sLs~~g~~LvsgS~DgtIkVWDl~~~---~~~~~~~~~V~~La~-~dg~Ll-SGs~DGsI~IWDl~t~~~~~i~~~l 1230 (1349)
.+.++..+|..+.+++.||++++|++... .....++..|.++.| +||+++ +.+.| ..++|+++++....-..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 56677889999999999999999997632 222334455999999 999655 56777 999999999832111110
Q ss_pred cccccCCCCeEEEEEcCC----ceEEEEEecCCCeEEEEECCCCC-----eEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000694 1231 KSWRLQSKPINSLVVYKD----WLYSASSSVEGSNIKEWRRHRKP-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1301 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd----~i~las~S~dDgtIrIWDl~t~~-----li~tl~gH~~~VtsLafSPDg~~LaSGS~D 1301 (1349)
......+..+.|..+ ..++++.....+.|+.||+.... ...+.......|+++++++||++++.|+.|
T Consensus 226 ---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 ---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 111223334444433 34444444445567666653311 111111223469999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEeC-CCC-eEEEEEc--CCEEEEEECCCcEEEe
Q 000694 1302 SSLQIWLRGTQQKVGRISA-GSK-ITSLLTA--NDIVLCGTETGLIKGW 1346 (1349)
Q Consensus 1302 GtVrVWDl~tg~~l~sl~~-hs~-VtsLs~d--g~~LaSGS~DGtIrIW 1346 (1349)
|.|-|++..+.+.++-.+. |.. |+.+.|. .+.+++-+.|.++.|-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 9999999999988887774 554 9999885 4477777777766654
No 225
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=1.3e-06 Score=104.49 Aligned_cols=261 Identities=11% Similarity=0.073 Sum_probs=163.1
Q ss_pred EEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC
Q 000694 1074 ALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1074 ~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h 1153 (1349)
...+.++.+++++.+|.|..+|..+|+. +..+.-.......... ++..++.++.||.+..+|..+|+........
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~- 134 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS- 134 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-
Confidence 3345688999999999999999999875 4444322221122222 4677888999999999999999876543322
Q ss_pred CCCeEE-ecCCCCEEEEEecCCeEEEEecC-CcceeeccC-CCe------EEEEeeCCEEEEEeCCCcEEEEEccCCccc
Q 000694 1154 KEPIRK-LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRS-KGI------KSMSVVQGKIYIGCMDSSIQELAVSNNVER 1224 (1349)
Q Consensus 1154 ~~~V~s-Ls~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~-~~V------~~La~~dg~LlSGs~DGsI~IWDl~t~~~~ 1224 (1349)
..+.+ ....++.++.++.++.+..||.. +...-.... ... .+..+.++.++.+..+|.+..+|..+++..
T Consensus 135 -~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 135 -SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred -ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 22222 12245678888889999999986 322211111 111 112235678888889999999999888532
Q ss_pred cccccccccccCC------CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 000694 1225 EIKAPFKSWRLQS------KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1298 (1349)
Q Consensus 1225 ~i~~~lk~~~~h~------~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG 1298 (1349)
-.... ..-.+.. ....+..++.+.+++.+ .+|.+..||..+++.+..... .. .... ..++..++.+
T Consensus 214 W~~~~-~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~-~~-~~~p--~~~~~~vyv~ 285 (377)
T TIGR03300 214 WEQRV-ALPKGRTELERLVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDA-SS-YQGP--AVDDNRLYVT 285 (377)
T ss_pred eeecc-ccCCCCCchhhhhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeecc-CC-ccCc--eEeCCEEEEE
Confidence 11000 0000000 00011223344444433 377899999999987765542 11 1122 2356778888
Q ss_pred eCCCcEEEEECCCCcEEEEEeC-CC-CeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1299 SSASSLQIWLRGTQQKVGRISA-GS-KITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~-hs-~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+.||.+..+|..+|+.+..... .. ...+....+..+++++.+|.|++||.
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 8999999999999998876632 22 23444456889999999999999985
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=119.46 Aligned_cols=165 Identities=15% Similarity=0.218 Sum_probs=121.9
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec----CCCCEEEEEecCCeEEEE
Q 000694 1104 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVI 1179 (1349)
Q Consensus 1104 i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs----~~g~~LvsgS~DgtIkVW 1179 (1349)
...+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.......+|...|.+.. .++..+++|+.|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467899999999999999999999999999999999988888888889999998843 456678899999999999
Q ss_pred ecCCcc-----------eeeccC--CCeEEEEe-eCC--EEEEEeCCCcEEEEEccCCccc----cccccccccccCCCC
Q 000694 1180 DSSRTL-----------KDIYRS--KGIKSMSV-VQG--KIYIGCMDSSIQELAVSNNVER----EIKAPFKSWRLQSKP 1239 (1349)
Q Consensus 1180 Dl~~~~-----------~~~~~~--~~V~~La~-~dg--~LlSGs~DGsI~IWDl~t~~~~----~i~~~lk~~~~h~~~ 1239 (1349)
|++... ...+.. ..|..++. +++ .+++++.||+|+-||++..... .+...+..+.+.--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 998311 111111 22777777 554 5779999999999999874211 111111122233345
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1240 INSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1240 I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
..++.++|...+.++.+..|-..++||.+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 67888898876665555567789999963
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2e-07 Score=112.04 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=173.9
Q ss_pred CCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCce-------------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 000694 1068 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-------------MLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 1132 (1349)
Q Consensus 1068 H~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~-------------~~i~tL~gHss~VtsLafSpdg~~LaSGS~D 1132 (1349)
.+....|+.|+ .|++++||.||.++|-.+.+... ..-+++.||++.|.-+.|+.+.+.|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 45677899996 67999999999999998865321 1234678999999999999999999999999
Q ss_pred CeEEEEEccCCeEEEEEEe-cCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcce--eeccCCCeEEEEe-eCCEE-E
Q 000694 1133 KTIGVWQMVQRKLELIEVI-ATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIKSMSV-VQGKI-Y 1205 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~-~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~--~~~~~~~V~~La~-~dg~L-l 1205 (1349)
|.|.||-+-.|...-.... ..+..|.+ +..+|..++.+-.||.|.|=.++|... ...++.....+.+ +|.++ +
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 9999999987764322222 23344555 457899999999999888877664321 1122222344555 55543 3
Q ss_pred EEeCCCcEEEEEccCCccccc-----cccccccccCCCCeEEEEEc--------CCceEEEEEecCCCeEEEEECCCCCe
Q 000694 1206 IGCMDSSIQELAVSNNVEREI-----KAPFKSWRLQSKPINSLVVY--------KDWLYSASSSVEGSNIKEWRRHRKPQ 1272 (1349)
Q Consensus 1206 SGs~DGsI~IWDl~t~~~~~i-----~~~lk~~~~h~~~I~sL~~~--------pd~i~las~S~dDgtIrIWDl~t~~l 1272 (1349)
.+-.+|.+.+||....-..+. ......+...+..|..+.+. |+...++.+ .+.|.+.+..-.+...
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc-y~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC-YANGRMQIMRSENDPE 251 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE-EcCceehhhhhcCCCC
Confidence 566789999999865421111 00111111122334444443 343333333 2466677665433222
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCC---------cEEEEECCCCcEEEEEeCCC-CeEEEEEcCC-EEEEEECCC
Q 000694 1273 ISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---------SLQIWLRGTQQKVGRISAGS-KITSLLTAND-IVLCGTETG 1341 (1349)
Q Consensus 1273 i~tl~gH~~~VtsLafSPDg~~LaSGS~DG---------tVrVWDl~tg~~l~sl~~hs-~VtsLs~dg~-~LaSGS~DG 1341 (1349)
...+. .+-.+.+..|+++|.+|+.+|.|. .|.+|. .-|+.+++++..+ .|++++|.|. .=+.-..|+
T Consensus 252 Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds 329 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS 329 (1189)
T ss_pred CeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence 11221 235788999999999999998652 344443 4567788888654 4999999865 222333466
Q ss_pred cEEE
Q 000694 1342 LIKG 1345 (1349)
Q Consensus 1342 tIrI 1345 (1349)
.|++
T Consensus 330 fiyf 333 (1189)
T KOG2041|consen 330 FIYF 333 (1189)
T ss_pred eEEE
Confidence 6654
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=6.4e-07 Score=109.41 Aligned_cols=204 Identities=14% Similarity=0.053 Sum_probs=125.7
Q ss_pred CeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecC---CeEEEEecCCcce-eeccCCC-eEEEEe-eCCE-
Q 000694 1133 KTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQG---HRMKVIDSSRTLK-DIYRSKG-IKSMSV-VQGK- 1203 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~D---gtIkVWDl~~~~~-~~~~~~~-V~~La~-~dg~- 1203 (1349)
.+|.+||...+... .+..+...+.+ ++++++.+++++.+ ..|.+||+.+... .+....+ ..+..| ++|.
T Consensus 184 ~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 46889998655432 23344555554 67999999988744 3699999974332 2222222 345677 7775
Q ss_pred EE-EEeCCC--cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCe--EEEEECCCCCeEEEecC
Q 000694 1204 IY-IGCMDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN--IKEWRRHRKPQISIAPE 1278 (1349)
Q Consensus 1204 Ll-SGs~DG--sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgt--IrIWDl~t~~li~tl~g 1278 (1349)
++ +.+.+| .|++||+.++....+ ..+........|+|++..++..+..++. |.++|+.+++... +..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~l-------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~ 333 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRL-------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF 333 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEEC-------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec
Confidence 44 345555 599999988754322 2223334567899998877765544443 7777777765433 222
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeE--EEEEcCCEEEEEECC-C--cEEEee
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAGSKIT--SLLTANDIVLCGTET-G--LIKGWI 1347 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DG---tVrVWDl~tg~~l~sl~~hs~Vt--sLs~dg~~LaSGS~D-G--tIrIWD 1347 (1349)
+.......+|+|||++|+..+.++ .|.+||+.+++.. .+..+.... ++++||++++..+.+ | .|.+|+
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 344455789999999998765443 6899999888755 444332333 334467776665543 2 455554
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=1e-05 Score=95.93 Aligned_cols=262 Identities=11% Similarity=0.164 Sum_probs=168.6
Q ss_pred EEEEECC----CcEEEEEC--CCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEccC--CeEEEEE
Q 000694 1082 LCSGFSD----GSIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----DKTIGVWQMVQ--RKLELIE 1149 (1349)
Q Consensus 1082 LaSGS~D----GtIrVWDl--~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~----DGtIrVWDl~t--g~~~~~~ 1149 (1349)
++.|+.+ +.|.+|++ .+++...+..+. .......++++|++++|+++.. +|.|..|++.. |.+....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5667776 78999888 566665555543 3455678999999999998876 57999998876 4543322
Q ss_pred Eec--CCCCeE-EecCCCCEEEEEe-cCCeEEEEecCC--ccee---ec------------cCCCeEEEEe-eCCE-EEE
Q 000694 1150 VIA--TKEPIR-KLDTYGKTIFAST-QGHRMKVIDSSR--TLKD---IY------------RSKGIKSMSV-VQGK-IYI 1206 (1349)
Q Consensus 1150 ~~~--h~~~V~-sLs~~g~~LvsgS-~DgtIkVWDl~~--~~~~---~~------------~~~~V~~La~-~dg~-LlS 1206 (1349)
... ...++. ++.+++..++++. .+|.+.++++.. .... .. ...+..++.+ |+++ +++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222 222222 3668899888887 578999999873 1111 11 1233778888 7765 444
Q ss_pred E-eCCCcEEEEEccCCc--cccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCe--EEEecC-
Q 000694 1207 G-CMDSSIQELAVSNNV--EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQ--ISIAPE- 1278 (1349)
Q Consensus 1207 G-s~DGsI~IWDl~t~~--~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~--t~~l--i~tl~g- 1278 (1349)
. -....|.+|++.... .... . ..-...+...+.+.++|++.++......++.|.+|++. ++.. +.....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~-~--~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPV-D--SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEE-E--EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EecCCCEEEEEEEeCCCceEEEe-e--ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 3 335689999997654 2110 0 01123456778999999988777666678899999987 4422 222221
Q ss_pred ---C--CCCeEEEEEecCCCEEEEEe-CCCcEEEEECC--CCc--EEEEEeC-CCCeEEEEE--cCCEEEEEE-CCCcEE
Q 000694 1279 ---K--GTTIQAMAVVEDFIYLNYNS-SASSLQIWLRG--TQQ--KVGRISA-GSKITSLLT--ANDIVLCGT-ETGLIK 1344 (1349)
Q Consensus 1279 ---H--~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl~--tg~--~l~sl~~-hs~VtsLs~--dg~~LaSGS-~DGtIr 1344 (1349)
. ......++++|||++|+++. .++.|.+|++. +++ .+..+.. +.....+.+ +|++|++++ .++.|.
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 1 12578999999999987765 67889999983 333 4444544 333677776 688888777 567888
Q ss_pred Eee
Q 000694 1345 GWI 1347 (1349)
Q Consensus 1345 IWD 1347 (1349)
+|+
T Consensus 318 vf~ 320 (345)
T PF10282_consen 318 VFD 320 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 230
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=3.7e-08 Score=127.84 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=145.3
Q ss_pred EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--
Q 000694 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK-- 1159 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s-- 1159 (1349)
+....-+++..-|..+.+.. .++.|-..|.++.-+|...+.+||+.||.|++|....++.++.........|+.
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~----~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV----MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred CCcccCCccccceeccccee----EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 33444455566666655432 234455678899999999999999999999999987766544333332233333
Q ss_pred ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCC
Q 000694 1160 LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 1239 (1349)
Q Consensus 1160 Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~ 1239 (1349)
+...|+.+.. +..||.+.+|.+... +...|..|...
T Consensus 2259 f~~qGnk~~i-------------------------------------~d~dg~l~l~q~~pk-------~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2259 FNHQGNKFGI-------------------------------------VDGDGDLSLWQASPK-------PYTSWQCHNKA 2294 (2439)
T ss_pred hcccCCceee-------------------------------------eccCCceeecccCCc-------ceeccccCCcc
Confidence 2234444444 444555555544311 22344556666
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000694 1240 INSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 1316 (1349)
Q Consensus 1240 I~sL~~~pd~i~las~S~dDgtIrIWDl~t---~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~ 1316 (1349)
...+.|-......+.-+++++.+.+||..- ..++. +.|.+.++++++-|..+.+++||.+|.|++||++..+.++
T Consensus 2295 ~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2295 LSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred ccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 666666666666666677899999999743 23344 7799999999999999999999999999999999888887
Q ss_pred EEeCCCCeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1317 RISAGSKITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1317 sl~~hs~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.++. +. ...++++|+..|.|+||+.
T Consensus 2373 ~~~~------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2373 TFQA------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred Hhhh------hh-hhheeeccCcccceEEEEc
Confidence 7764 22 3558999999999999974
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.74 E-value=4.2e-06 Score=100.18 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=142.8
Q ss_pred EEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEccCCeEEEEE
Q 000694 1073 TALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1073 t~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS-~DGtIrVWDl~tg~~~~~~ 1149 (1349)
..+.++ || ++++++.||.|.++|+.+++. +.+++.. ....++++++||++++++. .++.+.++|..+.+.+...
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV--VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE--EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE--EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 345664 45 688888999999999999875 7777643 3567899999999988664 6899999999998776543
Q ss_pred Eec------CCCCeEEec--CCCC-EEEEEecCCeEEEEecCCc--c--eeeccCCCeEEEEe-eCCE-EEE-EeCCCcE
Q 000694 1150 VIA------TKEPIRKLD--TYGK-TIFASTQGHRMKVIDSSRT--L--KDIYRSKGIKSMSV-VQGK-IYI-GCMDSSI 1213 (1349)
Q Consensus 1150 ~~~------h~~~V~sLs--~~g~-~LvsgS~DgtIkVWDl~~~--~--~~~~~~~~V~~La~-~dg~-LlS-Gs~DGsI 1213 (1349)
... ....+..+. +... .++..-..+.|.+.|.... . ..+..+.......+ ++++ +++ ...++.|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 322 122344432 4445 3444444577777776532 1 11222333556666 5554 334 3446677
Q ss_pred EEEEccCCcccccc--------------------------------------cc-----------ccccccCCCCeEEEE
Q 000694 1214 QELAVSNNVEREIK--------------------------------------AP-----------FKSWRLQSKPINSLV 1244 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~--------------------------------------~~-----------lk~~~~h~~~I~sL~ 1244 (1349)
.++|..+++..... .+ .+.....+.+ ..+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 77777655321110 00 0000111222 3456
Q ss_pred EcCCceEEEEE---ecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCcEEEEE
Q 000694 1245 VYKDWLYSASS---SVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDFIYLNYNSSA--SSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1245 ~~pd~i~las~---S~dDgtIrIWDl~t~~li~tl~g-H~~~VtsLafSPDg~~LaSGS~D--GtVrVWDl~tg~~l~sl 1318 (1349)
.||+..++... +++.+.|.++|.++.+.+.++.. ....+..+.|++||+++..+..+ |.|.|||..+.+.+.++
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 67887777765 45567999999999887777753 23358999999999987665544 46999999999999998
Q ss_pred eC
Q 000694 1319 SA 1320 (1349)
Q Consensus 1319 ~~ 1320 (1349)
..
T Consensus 356 ~~ 357 (369)
T PF02239_consen 356 PV 357 (369)
T ss_dssp E-
T ss_pred Ee
Confidence 73
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.74 E-value=2.2e-06 Score=103.58 Aligned_cols=205 Identities=11% Similarity=0.019 Sum_probs=123.1
Q ss_pred CCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEecCCCCe--EEecC
Q 000694 1088 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPI--RKLDT 1162 (1349)
Q Consensus 1088 DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D---GtIrVWDl~tg~~~~~~~~~h~~~V--~sLs~ 1162 (1349)
...|.++|..++.. +.+..+...+.+.+|+|||++|+.++.+ ..|.+||+.+++..... .+...+ ..+++
T Consensus 169 ~~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECC
Confidence 34678888865543 3445577789999999999999876644 47999999887653221 122111 23445
Q ss_pred CCCEEEEEe-cCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeE
Q 000694 1163 YGKTIFAST-QGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPIN 1241 (1349)
Q Consensus 1163 ~g~~LvsgS-~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~ 1241 (1349)
+++.++... .++ +..|++||+.++....+ ..+.....
T Consensus 244 Dg~~l~~~~~~~~-----------------------------------~~~i~~~d~~~~~~~~l-------~~~~~~~~ 281 (417)
T TIGR02800 244 DGSKLAVSLSKDG-----------------------------------NPDIYVMDLDGKQLTRL-------TNGPGIDT 281 (417)
T ss_pred CCCEEEEEECCCC-----------------------------------CccEEEEECCCCCEEEC-------CCCCCCCC
Confidence 555444321 111 23456666655432211 11112233
Q ss_pred EEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEE
Q 000694 1242 SLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVG 1316 (1349)
Q Consensus 1242 sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DG---tVrVWDl~tg~~l~ 1316 (1349)
...+++++..++..+..++ .|.++|..+++.. .+..+...+....|+|+|++++.++.++ .|.+||+.++...
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~- 359 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER- 359 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-
Confidence 4567788776654443333 5888888776643 3444556677889999999999888775 7888898876543
Q ss_pred EEeCCCCe--EEEEEcCCEEEEEECCC
Q 000694 1317 RISAGSKI--TSLLTANDIVLCGTETG 1341 (1349)
Q Consensus 1317 sl~~hs~V--tsLs~dg~~LaSGS~DG 1341 (1349)
.+..+... .+++++|++|+.++.++
T Consensus 360 ~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 360 VLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EccCCCCCCCceECCCCCEEEEEEeCC
Confidence 33322222 24455677777766654
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.73 E-value=4.4e-07 Score=114.26 Aligned_cols=260 Identities=15% Similarity=0.127 Sum_probs=169.2
Q ss_pred CCCCEEEEEEcCCEEEEEECCCcEEEEECCCCcee----EEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1068 CSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1068 H~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~----~i~tL~gHss--~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
|-+++++..+-.++|.+|+ .-.|.+||...+... ..+.+..|.. .+. -.+.++++|+.-+-+.+=+..
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchh
Confidence 4455566666335555443 346889999886531 1122233410 111 123345555544433332221
Q ss_pred CCeEEEEEEecCCCCe--EEecCCCCEEEEEecCCeEEEEecCCcceeeccCCC-----eEEEEe--eC--CEEEEEeCC
Q 000694 1142 QRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG-----IKSMSV--VQ--GKIYIGCMD 1210 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V--~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~-----V~~La~--~d--g~LlSGs~D 1210 (1349)
.... ....+.| ..+......++.++.++.+.+||............. ..++-+ .. =++++|+.-
T Consensus 80 ~~~~-----~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 80 NQII-----ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhhh-----hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1111 1111122 234567788999999999999999854333222222 122222 11 246678889
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEe
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~-tl~gH~~~VtsLafS 1289 (1349)
+.|.+|+...... +. ...+|.+.|.++.++.++.++++.+ +|+++++|++.+.+... ..-+|...|+.+.|.
T Consensus 155 ~~iivW~~~~dn~-----p~-~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 155 GEIIVWKPHEDNK-----PI-RLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccEEEEeccccCC-----cc-eecccCCceEEEEEccCCcEEEEEe-cCcceeeeecccccccCcccccccceeEEEEec
Confidence 9999999873221 11 3478999999999999999999886 79999999999987765 667899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1290 EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1290 PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs--~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
|+ .++|++.|.+.++|+.. ++.+..+.+|. .|..++.+ .-.+++++.||.+++|+.
T Consensus 228 ~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 228 PN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 98 99999999999999654 34444666554 38888765 348899999999999985
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=3.8e-07 Score=103.56 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=129.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcceeec
Q 000694 1112 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKDIY 1189 (1349)
Q Consensus 1112 s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~~~~ 1189 (1349)
..+..++|++.-..++++..|-+|++||-.. ++...........|+++. |.+...++.+--+.|.+|..+......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~- 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN- 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc-
Confidence 4577889998777788999999999999765 333333334445566643 544444444455566777664221100
Q ss_pred cCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1190 RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1190 ~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
..+.+...+... + -...+ ..+|+++++.+|+..+++.+.++..|.+||..+
T Consensus 177 -------------r~~~~~s~~~~q-----------v----l~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 177 -------------RNIRMMSTHHLQ-----------V----LQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred -------------cccccccccchh-----------h----eeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCC
Confidence 000000000000 0 01122 378999999999999999998999999999999
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCcEEEEEeCCCCeEEEEEc--CCEEE
Q 000694 1270 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW-LRGTQQKVGRISAGSKITSLLTA--NDIVL 1335 (1349)
Q Consensus 1270 ~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVW-Dl~tg~~l~sl~~hs~VtsLs~d--g~~La 1335 (1349)
+..+....-..+.++-+.|||||.++.++.-|+..++| ..++.....-.-+.+.|..-.|+ |.+|.
T Consensus 228 g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 87766554445678899999999999999999999999 55555555555566678777775 55433
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.70 E-value=5e-05 Score=90.21 Aligned_cols=258 Identities=12% Similarity=0.159 Sum_probs=164.9
Q ss_pred CEEEEEEc--CCEEEEEEC----CCcEEEEECCC--CceeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcc
Q 000694 1071 AVTALIYY--KGLLCSGFS----DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMV 1141 (1349)
Q Consensus 1071 ~Vt~Lafs--dg~LaSGS~----DGtIrVWDl~t--g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS-~DGtIrVWDl~ 1141 (1349)
....++++ +++|.+... +|.|..|++.. +....+.+..........++++|++++|+++. .+|+|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 44456663 346666665 57899888875 56656666654445667899999999998876 48999999998
Q ss_pred C-CeEEEEE-Eec-----------CCCCeEE--ecCCCCEEEEEecC-CeEEEEecCCcc--e------eeccCCCeEEE
Q 000694 1142 Q-RKLELIE-VIA-----------TKEPIRK--LDTYGKTIFASTQG-HRMKVIDSSRTL--K------DIYRSKGIKSM 1197 (1349)
Q Consensus 1142 t-g~~~~~~-~~~-----------h~~~V~s--Ls~~g~~LvsgS~D-gtIkVWDl~~~~--~------~~~~~~~V~~L 1197 (1349)
. |...... ... ......+ +.++++.+++...+ ..|.+|+++... . ....+.+-+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 7 5443221 111 1122333 56889988877654 479999987432 1 22345568889
Q ss_pred Ee-eCCE-EEE-EeCCCcEEEEEcc--CCcccccccccccc--ccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECC-
Q 000694 1198 SV-VQGK-IYI-GCMDSSIQELAVS--NNVEREIKAPFKSW--RLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRH- 1268 (1349)
Q Consensus 1198 a~-~dg~-LlS-Gs~DGsI~IWDl~--t~~~~~i~~~lk~~--~~h-~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~- 1268 (1349)
.| ++++ +++ .-.++.|.+|++. ++....+.. .... ... ......+.++|++.++.......+.|.+|++.
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT-ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE-eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99 7765 444 4458899999998 332221110 0111 111 23678899999999888877778899999983
Q ss_pred -CCCe--EEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcEEEEEe--CCCCeEEEEE
Q 000694 1269 -RKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLR--GTQQKVGRIS--AGSKITSLLT 1329 (1349)
Q Consensus 1269 -t~~l--i~tl~gH~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl--~tg~~l~sl~--~hs~VtsLs~ 1329 (1349)
++.+ +..+.......+.++++|+|++|+++. .++.|.+|++ .+|.....-. .-....|+.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3433 334443455689999999999998887 6678999955 5766554432 2334566655
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.1e-06 Score=104.91 Aligned_cols=211 Identities=9% Similarity=0.045 Sum_probs=133.2
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEE---CCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCC--eEEE
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGF---SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADK--TIGV 1137 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS---~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSG-S~DG--tIrV 1137 (1349)
..+.+.+.+.+|+ || .|+..+ .+..|.+||+.+++...+..+.+| +....|+|||+.|+.. +.+| .|.+
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 3456788999995 55 455443 345799999998876555555544 4468999999988754 4455 5888
Q ss_pred EEccCCeEEEEEEecCCCCe--EEecCCCCEEEEEecC-Ce--EEEEecCCc-ceeec-cCCCeEEEEe-eCCEEE-EEe
Q 000694 1138 WQMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQG-HR--MKVIDSSRT-LKDIY-RSKGIKSMSV-VQGKIY-IGC 1208 (1349)
Q Consensus 1138 WDl~tg~~~~~~~~~h~~~V--~sLs~~g~~LvsgS~D-gt--IkVWDl~~~-~~~~~-~~~~V~~La~-~dg~Ll-SGs 1208 (1349)
||+.+++.... ..+...+ ..++++|+.++.++.+ +. |.++|+.+. ...+. .........+ |+|+.+ ..+
T Consensus 272 ~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIRQV--TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEEEc--cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 99988876432 2222222 3478999988877754 44 444566542 22222 2223455666 777544 333
Q ss_pred C-C--CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCe
Q 000694 1209 M-D--SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTI 1283 (1349)
Q Consensus 1209 ~-D--GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~V 1283 (1349)
. + ..|.+||+.++....+. . ........++|++..++..+.+++ .+.++++. |.....+.+|.+.+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~Lt-------~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~ 420 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQVLT-------D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQV 420 (429)
T ss_pred ccCCCceEEEEECCCCCeEEeC-------C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCc
Confidence 2 2 45888999887543221 1 111235678999988877665443 36777874 55566677788888
Q ss_pred EEEEEec
Q 000694 1284 QAMAVVE 1290 (1349)
Q Consensus 1284 tsLafSP 1290 (1349)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 8888987
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.3e-06 Score=102.88 Aligned_cols=182 Identities=13% Similarity=0.177 Sum_probs=121.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEec--c-CCCcEEEEEEc------C--------------CCCEEEEEeCCCeEEE
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVK--E-HRKAVTSFSLF------E--------------PGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~--g-Hss~VtsLafS------p--------------dg~~LaSGS~DGtIrV 1137 (1349)
++|....||.+++||..+++. ...|. . -++.-++..|. | +...++-|...|.|.+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred eEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 789999999999999998764 22232 1 12333444442 1 1223444555555555
Q ss_pred EEccCCeEEEEEE-ecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe--eCCEEEEEeCCCcEE
Q 000694 1138 WQMVQRKLELIEV-IATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQ 1214 (1349)
Q Consensus 1138 WDl~tg~~~~~~~-~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~ 1214 (1349)
|++..|+...... ..|.+. |.++.. .-+.+++++.|+.+.
T Consensus 85 ys~~~g~it~~~st~~h~~~-------------------------------------v~~~~~~~~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGN-------------------------------------VNEILDAQRLGCIYSVGADLKVV 127 (541)
T ss_pred EEecCCeEEEEEecCCCCCc-------------------------------------ceeeecccccCceEecCCceeEE
Confidence 5555554433322 123333 444443 335677777788888
Q ss_pred EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC---
Q 000694 1215 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED--- 1291 (1349)
Q Consensus 1215 IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPD--- 1291 (1349)
.|+..+.... +.|......+.++++.||+..++++ .+.|++||+++++.+.+|+||.++|++++|.-+
T Consensus 128 ~~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~a---s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 128 YILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTA---SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred EEecccceee------eeeccCCCccceEEEcCCCCEEEec---cceEEEEEccCceEEEEecCCCcceEEEEEEEeccc
Confidence 8887776533 4566777788999999998888876 468999999999999999999999999999876
Q ss_pred --CCEEEEE-eCCCcEEEEECC
Q 000694 1292 --FIYLNYN-SSASSLQIWLRG 1310 (1349)
Q Consensus 1292 --g~~LaSG-S~DGtVrVWDl~ 1310 (1349)
|.++.++ ..+.-+.+|-+.
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cccceeeeccccccceeEEEEE
Confidence 6666654 355668888443
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.8e-06 Score=98.77 Aligned_cols=262 Identities=11% Similarity=0.113 Sum_probs=155.6
Q ss_pred CEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEE-----eCC-----CeEEEEE
Q 000694 1071 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-----SAD-----KTIGVWQ 1139 (1349)
Q Consensus 1071 ~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSG-----S~D-----GtIrVWD 1139 (1349)
.++..+++ +|.++.-+.++.++|++..++.. +.+... ..+.++.|+|-|.+|.|- ..| -.+++|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKV--VLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcE--EEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 35566664 67899999999999999998763 333332 278999999999988752 222 3467999
Q ss_pred ccCCeEEEEEEecCCC-CeEEecCCC------------------------------------------CEEEEE-----e
Q 000694 1140 MVQRKLELIEVIATKE-PIRKLDTYG------------------------------------------KTIFAS-----T 1171 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~-~V~sLs~~g------------------------------------------~~Lvsg-----S 1171 (1349)
+.++............ ....|+.+. ..+++- +
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 9885432111111111 111111111 111110 1
Q ss_pred cCCeEEEEecCCc-------ceeeccCCCeEEEEe-eCC--EEEEEe--C---------CCcEEEEEccCCccccccccc
Q 000694 1172 QGHRMKVIDSSRT-------LKDIYRSKGIKSMSV-VQG--KIYIGC--M---------DSSIQELAVSNNVEREIKAPF 1230 (1349)
Q Consensus 1172 ~DgtIkVWDl~~~-------~~~~~~~~~V~~La~-~dg--~LlSGs--~---------DGsI~IWDl~t~~~~~i~~~l 1230 (1349)
.-+.+++|..... .+.++.... ..+.| ..| .|+.++ - ..+++++++.... ..
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~----- 264 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VS----- 264 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EE-----
Confidence 1123445544310 011111111 11222 111 122111 1 2356666665221 11
Q ss_pred cccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEE
Q 000694 1231 KSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQI 1306 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd~-i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D---GtVrV 1306 (1349)
+--...++|+++.|++++ .+.+..+..-.++.|||++.. ++..+. .++-+++-|+|.|++++.+|.+ |.|.|
T Consensus 265 -V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 265 -VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred -EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 111236899999999986 455555555668999998754 555543 5666789999999999888754 89999
Q ss_pred EECCCCcEEEEEeCCC-CeEEEEEcCCEEEEEEC------CCcEEEee
Q 000694 1307 WLRGTQQKVGRISAGS-KITSLLTANDIVLCGTE------TGLIKGWI 1347 (1349)
Q Consensus 1307 WDl~tg~~l~sl~~hs-~VtsLs~dg~~LaSGS~------DGtIrIWD 1347 (1349)
||+.+.+.+.++.... .+...++||.++++++. |+.++||+
T Consensus 341 wDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9999999998888643 46677778998888775 67789996
No 239
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=7.3e-08 Score=112.72 Aligned_cols=218 Identities=16% Similarity=0.115 Sum_probs=145.6
Q ss_pred eeecccCCCCEEEEEE-c-CCEEEEEECCCcEEEEECCC-----CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe
Q 000694 1062 LEASHKCSGAVTALIY-Y-KGLLCSGFSDGSIKMWDIKK-----QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 1134 (1349)
Q Consensus 1062 l~~~~gH~~~Vt~Laf-s-dg~LaSGS~DGtIrVWDl~t-----g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGt 1134 (1349)
+..+.||+..|+.++- + .+-+++++.|.+|++|.++. +...+..+++.|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4668899999999987 3 34699999999999999864 2233577889999999999999988888754 789
Q ss_pred EEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEE-EE-eCCCc
Q 000694 1135 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIY-IG-CMDSS 1212 (1349)
Q Consensus 1135 IrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~Ll-SG-s~DGs 1212 (1349)
|.+||.--|+.........+. ..+..|.|+.-.+..++ +| +...+
T Consensus 806 iHlWDPFigr~Laq~~dapk~---------------------------------~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKE---------------------------------GAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred ceeecccccchhHhhhcCccc---------------------------------CCCceeEecccCcchheeeeccchhh
Confidence 999998766553211110000 00011223322222322 33 44667
Q ss_pred EEEEEccCCcccccccccccc--ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1213 IQELAVSNNVEREIKAPFKSW--RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~--~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
|+++|.+......- .++- .+.+..++++++.+.+.+++++- ..|.|.+.|.++|+++..+.........++ .|
T Consensus 853 VKl~DaRsce~~~E---~kVcna~~Pna~~R~iaVa~~GN~lAa~L-SnGci~~LDaR~G~vINswrpmecdllqla-ap 927 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCE---LKVCNAPGPNALTRAIAVADKGNKLAAAL-SNGCIAILDARNGKVINSWRPMECDLLQLA-AP 927 (1034)
T ss_pred heeeecccccceee---EEeccCCCCchheeEEEeccCcchhhHHh-cCCcEEEEecCCCceeccCCcccchhhhhc-Cc
Confidence 77777766532111 0111 23345678888888877776543 367999999999999888776555554554 46
Q ss_pred CCCEEEEEeCCCcEEE-EECCCCcEEEEEe
Q 000694 1291 DFIYLNYNSSASSLQI-WLRGTQQKVGRIS 1319 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrV-WDl~tg~~l~sl~ 1319 (1349)
..+.++....|.++.| |..-+|....+.+
T Consensus 928 sdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 7778888888999999 9877776555544
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=1.7e-06 Score=94.49 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=84.2
Q ss_pred CeEEEEe-eCCE-EE--EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC--CCeEEEEE
Q 000694 1193 GIKSMSV-VQGK-IY--IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--GSNIKEWR 1266 (1349)
Q Consensus 1193 ~V~~La~-~dg~-Ll--SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d--DgtIrIWD 1266 (1349)
.|.++++ |+|. ++ .|..++.|.+||++... ....+...++.+.|+|++.+++.++.+ .|.+.+||
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~---------i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK---------IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccE---------eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 3788888 6654 33 35567899999996332 223345677899999999888876532 46899999
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEE
Q 000694 1267 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1267 l~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~------DGtVrVWDl~tg~~l~sl 1318 (1349)
.++.+.+.... | ..++.++|+|||+++++++. |+.++||+.. |+.+...
T Consensus 132 ~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 132 VRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99888887765 3 34789999999999999874 7889999974 6666544
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=5.1e-07 Score=113.73 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=114.0
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL 1160 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL 1160 (1349)
++++|+.-|.|.+|+....+. ++ .+.||.+.|.++.|+.||.+++|.|.|.++|+|++++++.......+|...|...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~-p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNK-PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEeccccccEEEEeccccCC-cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 699999999999999973322 22 6789999999999999999999999999999999999887655667888888886
Q ss_pred cCCCCEEEEEecCCeEEEEecCCcceeeccCC---CeEEEEeeCC--EEEEEeCCCcEEEEEccC
Q 000694 1161 DTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK---GIKSMSVVQG--KIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1161 s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~---~V~~La~~dg--~LlSGs~DGsI~IWDl~t 1220 (1349)
....+.+++++.|.+.++|+.++.....+..| ++..+.++.+ ..++++.||.+++||+..
T Consensus 225 ~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 65555999999999999999987665555443 4888888433 455899999999999854
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=8.2e-06 Score=99.47 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=135.2
Q ss_pred cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEecCCCCeEEecCCCCE
Q 000694 1090 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 1166 (1349)
Q Consensus 1090 tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D---GtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~ 1166 (1349)
.|.++|..++.. +.+..+...+....|+|||+.|+..+.+ ..|.+||+.+|+............-..++++|+.
T Consensus 180 ~l~~~d~~g~~~---~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA---VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc---eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 477888876653 3444577889999999999998866543 3688999988875432211111112357899998
Q ss_pred EEE-EecCC--eEEEEecCCcceeeccC-C-CeEEEEe-eCCE-EEEEe-CCC--cEEEEEccCCccccccccccccccC
Q 000694 1167 IFA-STQGH--RMKVIDSSRTLKDIYRS-K-GIKSMSV-VQGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 1236 (1349)
Q Consensus 1167 Lvs-gS~Dg--tIkVWDl~~~~~~~~~~-~-~V~~La~-~dg~-LlSGs-~DG--sI~IWDl~t~~~~~i~~~lk~~~~h 1236 (1349)
++. .+.+| .|.+||+.+........ . ......| ++|. ++..+ .+| .|+++|+.++....+ ...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-------t~~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-------TFV 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-------ecC
Confidence 874 44444 58888987543322222 2 2444566 6664 54443 333 577778777653322 111
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCC
Q 000694 1237 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-S--SLQIWLRGT 1311 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D-G--tVrVWDl~t 1311 (1349)
+.......++|++..++..+..++ .|.+||+.++.... +.. ........|+|||++++..+.+ | .+.+++...
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 122334678888877765544333 58889998876533 332 2222356899999998776643 3 455567643
Q ss_pred CcEEEEEeCC-CCeEEEEEcC
Q 000694 1312 QQKVGRISAG-SKITSLLTAN 1331 (1349)
Q Consensus 1312 g~~l~sl~~h-s~VtsLs~dg 1331 (1349)
.....+..+ +.+...+|++
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 333344432 3355555543
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=7.7e-07 Score=106.79 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=137.5
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC--CcceeeccCCCeEEEE
Q 000694 1121 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMS 1198 (1349)
Q Consensus 1121 pdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~--~~~~~~~~~~~V~~La 1198 (1349)
|...+++....||.+|+||...++....+. ++...+ ..++-..|.+. ...........+...+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-----p~~~~s----------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA-----PIASLS----------GTCTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec-----cchhcc----------CcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 456789999999999999998887643221 111121 22233344432 0111000000011111
Q ss_pred eeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC
Q 000694 1199 VVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE 1278 (1349)
Q Consensus 1199 ~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g 1278 (1349)
.....++-|...|.|.+|++..++..... .-..|..+++++..+.+.-.+-++ ..|+.+..|+...+..+..+.+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~----st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKL----STDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEE----ecCCCCCcceeeecccccCceEec-CCceeEEEEecccceeeeeecc
Confidence 12234555888999999999888643221 114578889988877664444433 3578999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--c-----CCEEEE-EECCCcEEEe
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--A-----NDIVLC-GTETGLIKGW 1346 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~--d-----g~~LaS-GS~DGtIrIW 1346 (1349)
....+.+++.+|||..+++++ +.|++||+++++.+..+.||+. |.+++| + |.++.+ ...+.-|.+|
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 999999999999999999986 7899999999999999999775 888886 2 555444 4445556666
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.63 E-value=5e-05 Score=89.85 Aligned_cols=253 Identities=10% Similarity=0.030 Sum_probs=151.6
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEEccCCeEEEEEEecCC----
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----------DKTIGVWQMVQRKLELIEVIATK---- 1154 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~----------DGtIrVWDl~tg~~~~~~~~~h~---- 1154 (1349)
|+|.+.|..+++. +.++.....+- .+ ++|||+.|+.+.. +..|.+||..+++.......+.+
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8899999999765 56665433333 34 9999998886655 78999999999988765544322
Q ss_pred ----CCeEEecCCCCEEEEEec--CCeEEEEecCC-ccee-eccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccc
Q 000694 1155 ----EPIRKLDTYGKTIFASTQ--GHRMKVIDSSR-TLKD-IYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREI 1226 (1349)
Q Consensus 1155 ----~~V~sLs~~g~~LvsgS~--DgtIkVWDl~~-~~~~-~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i 1226 (1349)
.....++++|+.+++... ++.+.+.|+.. .... +.......-+...+....+-|.||......+.+.....
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~- 181 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK- 181 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE-
Confidence 124568899999887763 57899999973 2211 11111111111133333344566666554443321110
Q ss_pred cccccccccCCCCeEEE-EEcC-CceEEEEEecCCCeEEEEECCC-----CCeEEEecC-------CCCCeEEEEEecCC
Q 000694 1227 KAPFKSWRLQSKPINSL-VVYK-DWLYSASSSVEGSNIKEWRRHR-----KPQISIAPE-------KGTTIQAMAVVEDF 1292 (1349)
Q Consensus 1227 ~~~lk~~~~h~~~I~sL-~~~p-d~i~las~S~dDgtIrIWDl~t-----~~li~tl~g-------H~~~VtsLafSPDg 1292 (1349)
......+.....++..= .+.+ ++.++.... .|+|.+.|+.. ......+.. ..+.+.-++++|++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEec--CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 11111122211111000 1233 555554433 38999999543 333333321 12334459999999
Q ss_pred CEEEEEe----------CCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCC-EEEEEE-CCCcEEEeeC
Q 000694 1293 IYLNYNS----------SASSLQIWLRGTQQKVGRISAGSKITSLLT--AND-IVLCGT-ETGLIKGWIP 1348 (1349)
Q Consensus 1293 ~~LaSGS----------~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~-~LaSGS-~DGtIrIWD~ 1348 (1349)
+.++... ..+.|.++|..+++.+..+..+..+..+++ ||+ .|++.. .++.|.+.|.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 9887743 125799999999999999998777877776 567 777665 5788999885
No 245
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.62 E-value=1.2e-05 Score=96.88 Aligned_cols=256 Identities=12% Similarity=0.119 Sum_probs=159.1
Q ss_pred EEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC
Q 000694 1075 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1075 Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~Vts-LafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h 1153 (1349)
+...++.++.++.+|.+..+|..+|+. +...+... .+.+ ... .+..++.++.+|.+..+|..+|+.........
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEV--AWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCC--cccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 455678889999999999999999875 44443222 2221 112 24467778889999999999999876543321
Q ss_pred CCC-e---EEecCCCCEEEEEecCCeEEEEecCCc-ceeec---cC---CC------e-EEEEeeCCEEEEEeCCCcEEE
Q 000694 1154 KEP-I---RKLDTYGKTIFASTQGHRMKVIDSSRT-LKDIY---RS---KG------I-KSMSVVQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1154 ~~~-V---~sLs~~g~~LvsgS~DgtIkVWDl~~~-~~~~~---~~---~~------V-~~La~~dg~LlSGs~DGsI~I 1215 (1349)
... . .+-...++.++.++.+|.+..+|.... ..-.. .. .. + ..-.+.++.++.++.+|.+..
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 100 0 010112446777888888888776521 11000 00 00 0 111125788888889999999
Q ss_pred EEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC-CeEEEEEecCCCE
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT-TIQAMAVVEDFIY 1294 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~-~VtsLafSPDg~~ 1294 (1349)
+|..+++. .|.........+....+.+++.+ .++.+..+|..+++.+-....-.. ...+..+ .+.+
T Consensus 271 ld~~tG~~--------~W~~~~~~~~~~~~~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~ 337 (394)
T PRK11138 271 LDLRSGQI--------VWKREYGSVNDFAVDGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGY 337 (394)
T ss_pred EECCCCCE--------EEeecCCCccCcEEECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCE
Confidence 99998853 23322112222344445555543 477899999998877654332111 1112122 2567
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCC-CCeE-EEEEcCCEEEEEECCCcEEEeeC
Q 000694 1295 LNYNSSASSLQIWLRGTQQKVGRISAG-SKIT-SLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~Vt-sLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
++.++.||.+.+.|..+|+.+.+.... ..+. +-...++.|+.++.||.++.++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 788899999999999999999887643 3332 23345778999999999988764
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.61 E-value=1.4e-06 Score=98.64 Aligned_cols=238 Identities=10% Similarity=0.101 Sum_probs=158.5
Q ss_pred cccCCCCEEEEEE-c-CCEEEEEECCCcEEEEECC-CCceeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1065 SHKCSGAVTALIY-Y-KGLLCSGFSDGSIKMWDIK-KQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1065 ~~gH~~~Vt~Laf-s-dg~LaSGS~DGtIrVWDl~-tg~~~~i~tL-~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
..||.+.|++... + +.-+++.+.|.+++||--. .++. ...+ ..-..+++++.+.++...|+.|-..|++.-+.+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~--wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY--WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc--CchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 4788888887766 4 3469999999999999544 3432 2222 123478999999999999999999999988866
Q ss_pred cCC--e-EEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecC-C-cceeeccCCCeEEEEeeCCEEEEEeCCCcE
Q 000694 1141 VQR--K-LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-R-TLKDIYRSKGIKSMSVVQGKIYIGCMDSSI 1213 (1349)
Q Consensus 1141 ~tg--~-~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~-~-~~~~~~~~~~V~~La~~dg~LlSGs~DGsI 1213 (1349)
... + ........|...+.. ++.....+++.+.|..+.---.+ + ..........-.++.+.-+..+.|...|.|
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI 177 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence 431 1 111233467777776 34566778888887765432222 0 111111111111111111133446666666
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCC
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDF 1292 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~-li~tl~gH~~~VtsLafSPDg 1292 (1349)
..-.+...... +...+.+|..++.++.+.+....+.++. .|..+.+||+..++ ....+.+|...|..+..-+--
T Consensus 178 t~lr~~~~~~~----~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 178 TMLKLEQNGCQ----LITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred EEEEEeecCCc----eEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence 65555443322 2345678899999999999988887765 57789999996543 446777899999999888888
Q ss_pred CEEEEEeCCCcEEEEEC
Q 000694 1293 IYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1293 ~~LaSGS~DGtVrVWDl 1309 (1349)
+.+.+++.||.|.+|++
T Consensus 253 ~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNM 269 (404)
T ss_pred eeeeeccCCCeEEEEec
Confidence 99999999999999983
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=1.2e-05 Score=98.45 Aligned_cols=196 Identities=6% Similarity=-0.023 Sum_probs=122.2
Q ss_pred CeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEec---CCeEEEEecCCcceeecc-CC-CeEEEEe-eCCE-
Q 000694 1133 KTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQ---GHRMKVIDSSRTLKDIYR-SK-GIKSMSV-VQGK- 1203 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~---DgtIkVWDl~~~~~~~~~-~~-~V~~La~-~dg~- 1203 (1349)
..|.+||...+... .+..+...+.+ ++++|+.++.++. +..|.+||+.+....... .. .+....| |+|.
T Consensus 182 ~~l~~~d~dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 47888898665442 33455566665 6799999888764 357999999753322222 22 3556677 7775
Q ss_pred EE-EEeCCCc--EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecC
Q 000694 1204 IY-IGCMDSS--IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPE 1278 (1349)
Q Consensus 1204 Ll-SGs~DGs--I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD--gtIrIWDl~t~~li~tl~g 1278 (1349)
++ +.+.++. |++||+.++....+ ..+........++|++..++..+..+ ..|.+||..++.... +..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~L-------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~ 331 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRL-------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF 331 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEc-------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec
Confidence 43 4555555 77778887754322 22333455678999987776554333 368888987765543 333
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEEC
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTE 1339 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~D---GtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS~ 1339 (1349)
+...+....|+|||++|+..+.+ ..|.+||..++. ...+.....+....| ||++|+..+.
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEc
Confidence 45556778899999999877643 357888876554 334433223444444 6777766544
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=1.4e-07 Score=122.74 Aligned_cols=224 Identities=9% Similarity=0.105 Sum_probs=153.2
Q ss_pred ccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1066 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
..|-..|.++.-+ +-+.+||+.||.|++|....+.........|. ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 3455667777664 33789999999999999988775333333444 8999999999999999999999999999852
Q ss_pred eEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcc
Q 000694 1144 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE 1223 (1349)
Q Consensus 1144 ~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~ 1223 (1349)
........|+.....|..-+..+++++. .+.++.+.+||..-...
T Consensus 2283 -k~~~s~qchnk~~~Df~Fi~s~~~tag~----------------------------------s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIGSLLATAGR----------------------------------SSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred -cceeccccCCccccceeeeehhhhcccc----------------------------------CCCCCcccchhcccCcc
Confidence 1222333444444443322222222221 13466777777643322
Q ss_pred ccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000694 1224 REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS 1303 (1349)
Q Consensus 1224 ~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGt 1303 (1349)
... +...|...+++++.-|....+++++ .+|.|++||++..+.++.++. +. ...++++|+..|.
T Consensus 2328 ~s~-----v~~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2328 NSL-----VHTCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred cce-----eeeecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc
Confidence 111 1145778889999999998888876 577999999998877776663 34 6779999999999
Q ss_pred EEEEECCCCcEEEEEeC-C--CCe---EEEE--Ec-CCEEEEEECCCc
Q 000694 1304 LQIWLRGTQQKVGRISA-G--SKI---TSLL--TA-NDIVLCGTETGL 1342 (1349)
Q Consensus 1304 VrVWDl~tg~~l~sl~~-h--s~V---tsLs--~d-g~~LaSGS~DGt 1342 (1349)
++||++.....++++.+ | +.+ .... .+ ++.|++++.||+
T Consensus 2392 ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred eEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 99999999888887774 2 221 2222 22 457888888874
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=92.06 Aligned_cols=266 Identities=12% Similarity=0.123 Sum_probs=163.6
Q ss_pred CEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccCC----
Q 000694 1071 AVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQR---- 1143 (1349)
Q Consensus 1071 ~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~tg---- 1143 (1349)
.+..++|+.. .+|++..|-+|++||-.......++. .-...|+|++|-|.+. .|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4566778765 38999999999999988744322221 2346799999999875 4666665 45899976431
Q ss_pred eE------EE--EEEecCCCCeEEe--cCCCCEEEEEecC-CeEEEEecCCcce---eeccCCCeEEEEe-eCC-EEEEE
Q 000694 1144 KL------EL--IEVIATKEPIRKL--DTYGKTIFASTQG-HRMKVIDSSRTLK---DIYRSKGIKSMSV-VQG-KIYIG 1207 (1349)
Q Consensus 1144 ~~------~~--~~~~~h~~~V~sL--s~~g~~LvsgS~D-gtIkVWDl~~~~~---~~~~~~~V~~La~-~dg-~LlSG 1207 (1349)
.. .+ ........+|+++ ..+|..+++++.+ ..|.+||.+.... ......++.-+.+ ||| .++++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 10 00 1111223567775 4788888888865 4799999984322 2233445888888 766 56688
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--C-------------Ce
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--K-------------PQ 1272 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t--~-------------~l 1272 (1349)
+-|+..++|+....... ..|....+.|.+-.++|.+.+++-... |.-++|.+.- . .+
T Consensus 257 t~davfrlw~e~q~wt~------erw~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTK------ERWILGSGRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred cccceeeeehhccccee------cceeccCCceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCcccceeeee
Confidence 89999999966543211 134444558899999999877654332 2233333211 0 00
Q ss_pred E------EEecC---CCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEEEe-C---CCC--eEEEEE
Q 000694 1273 I------SIAPE---KGTTIQAMAVVEDFIYLNYNSSA--------SSLQIWLRGTQQKVGRIS-A---GSK--ITSLLT 1329 (1349)
Q Consensus 1273 i------~tl~g---H~~~VtsLafSPDg~~LaSGS~D--------GtVrVWDl~tg~~l~sl~-~---hs~--VtsLs~ 1329 (1349)
+ .+..+ ..+.+.+++|.|.|.++|+.-.. +.|.+||....-.+.-.. + +.. -.++.+
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 1 11111 24578899999999999987543 346778876654443332 1 111 233333
Q ss_pred ---cCCEEEEEECCCcEEEee
Q 000694 1330 ---ANDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1330 ---dg~~LaSGS~DGtIrIWD 1347 (1349)
.|.+|..+=..|.|.-|+
T Consensus 409 l~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred cccCCcEEEEEeccCceEeee
Confidence 256777777777776654
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=1.7e-05 Score=97.48 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=133.9
Q ss_pred cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEEEccCCeEEEEEEecCCCCeEEecCCCCE
Q 000694 1090 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 1166 (1349)
Q Consensus 1090 tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~-DG--tIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~ 1166 (1349)
.|.++|...... +.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++............-..++++|+.
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 577778776543 334456778999999999998886543 33 588889988765332211111112357899998
Q ss_pred EEE-EecCCe--EEEEecCCcc-eeeccCC-CeEEEEe-eCCE-EEEEe-CCC--cEEEEEccCCccccccccccccccC
Q 000694 1167 IFA-STQGHR--MKVIDSSRTL-KDIYRSK-GIKSMSV-VQGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 1236 (1349)
Q Consensus 1167 Lvs-gS~Dgt--IkVWDl~~~~-~~~~~~~-~V~~La~-~dg~-LlSGs-~DG--sI~IWDl~t~~~~~i~~~lk~~~~h 1236 (1349)
++. .+.+|. |.+||+.+.. ....... ......| ++|. ++..+ .++ .|+++|+.+++...+ .+ .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-----t~--~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-----TF--E 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-----ec--C
Confidence 875 455564 7777876433 2222222 2455667 7765 44333 333 466667776653322 11 1
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEECCC
Q 000694 1237 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS-ASS--LQIWLRGT 1311 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~-DGt--VrVWDl~t 1311 (1349)
+.......++|++.+++..+..++ .|.++|+.++.... +.... ......|+|||++|+..+. +|. +.+++. +
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 222334678998877665544444 46667887776533 33221 2234579999998876654 343 666676 5
Q ss_pred CcEEEEEeCC-CCeEEEEEcC
Q 000694 1312 QQKVGRISAG-SKITSLLTAN 1331 (1349)
Q Consensus 1312 g~~l~sl~~h-s~VtsLs~dg 1331 (1349)
|.....+..+ +.+...+|++
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 5555556543 3355555654
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.55 E-value=1.6e-06 Score=102.57 Aligned_cols=188 Identities=12% Similarity=0.126 Sum_probs=125.4
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEec--cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEecCCCCe
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~--gHss~VtsLafSpdg~~-LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V 1157 (1349)
-+..|-.-|.|.+.|....+...+.... -.+..|+|+.|-|.++. ++.+-.+|.+.++|..- ..+...+-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~ 259 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPS 259 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCc
Confidence 3888999999998887653321111111 12478999999987654 55667789999998721 11112222
Q ss_pred EEecCCCCEEEEEecC-----CeEEEEecCCcceeeccCCCeEEEEe-eCCE-EEEEeCCCcEEEEEccCCccccccccc
Q 000694 1158 RKLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIYRSKGIKSMSV-VQGK-IYIGCMDSSIQELAVSNNVEREIKAPF 1230 (1349)
Q Consensus 1158 ~sLs~~g~~LvsgS~D-----gtIkVWDl~~~~~~~~~~~~V~~La~-~dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~l 1230 (1349)
...-..+..+.....- +-+.-|-+ ....|..++| +||+ +++.+.||.++|||..+.+...+
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~--------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---- 327 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHI--------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---- 327 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEe--------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH----
Confidence 2222334433332211 11222222 1225777888 7775 55799999999999988754322
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1231 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1231 k~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
...--....+++|+||+.|+++++- |.-|.||.+..++++..-.+|..+|..++|.|
T Consensus 328 --mkSYFGGLLCvcWSPDGKyIvtGGE-DDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 --MKSYFGGLLCVCWSPDGKYIVTGGE-DDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --HHhhccceEEEEEcCCccEEEecCC-cceEEEEEeccceEEEeccccccceeeEeecc
Confidence 1222466899999999999999874 55999999999999999999999999999985
No 252
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.54 E-value=2.1e-06 Score=96.55 Aligned_cols=197 Identities=8% Similarity=0.035 Sum_probs=129.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-EE-EEEEecCCCCeEEe--cCCCCEEEEEecCCeEEEEecCCcc
Q 000694 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LE-LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTL 1185 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~-~~-~~~~~~h~~~V~sL--s~~g~~LvsgS~DgtIkVWDl~~~~ 1185 (1349)
-..+|+|.+|++|+..++.+-....|.||.....+ .. ...+..|...|+.+ .+..+.|++++.|.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~dr----------- 77 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDR----------- 77 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCC-----------
Confidence 35789999999999999999999999999987665 22 12233455555443 24444555555544
Q ss_pred eeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCC-ccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEE
Q 000694 1186 KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE 1264 (1349)
Q Consensus 1186 ~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~-~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrI 1264 (1349)
.-++|....+ +-. +.-.+..++...+++.+.|....++.++ ..+.|.+
T Consensus 78 --------------------------nayVw~~~~~~~Wk----ptlvLlRiNrAAt~V~WsP~enkFAVgS-gar~isV 126 (361)
T KOG1523|consen 78 --------------------------NAYVWTQPSGGTWK----PTLVLLRINRAATCVKWSPKENKFAVGS-GARLISV 126 (361)
T ss_pred --------------------------CccccccCCCCeec----cceeEEEeccceeeEeecCcCceEEecc-CccEEEE
Confidence 4444444222 111 1112233456678888888866666554 3556777
Q ss_pred EECCCCCe----EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-----C-------------CCcEEEEE-eCC
Q 000694 1265 WRRHRKPQ----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR-----G-------------TQQKVGRI-SAG 1321 (1349)
Q Consensus 1265 WDl~t~~l----i~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl-----~-------------tg~~l~sl-~~h 1321 (1349)
|-++...- ..+-+.+.+.|.+++|+|++-++++|+.|+..+|+.. + -|+.+..+ ..+
T Consensus 127 cy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG 206 (361)
T ss_pred EEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence 76643211 1222346778999999999999999999999999852 1 13344444 335
Q ss_pred CCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1322 SKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1322 s~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|..+.|+ |..|+-.+.|+++.+=|.
T Consensus 207 gwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 207 GWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 668888886 889999999999887553
No 253
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=1.6e-05 Score=97.07 Aligned_cols=198 Identities=14% Similarity=0.053 Sum_probs=116.0
Q ss_pred CeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecC---CeEEEEecCCcce-eeccC-CCeEEEEe-eCCE-
Q 000694 1133 KTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQG---HRMKVIDSSRTLK-DIYRS-KGIKSMSV-VQGK- 1203 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~D---gtIkVWDl~~~~~-~~~~~-~~V~~La~-~dg~- 1203 (1349)
..|.+||....... ....+...+.+ ++++|+.++.++.+ ..|.+||+.+... .+... ..+.+..| |||.
T Consensus 176 ~~L~~~D~dG~~~~--~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQ--SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCCce--EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 45777777443322 22344455544 77999999887753 3599999974332 22212 23456677 7774
Q ss_pred EE-EEeCCCcEEEEEc--cCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE--CCCCCeEEEecC
Q 000694 1204 IY-IGCMDSSIQELAV--SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR--RHRKPQISIAPE 1278 (1349)
Q Consensus 1204 Ll-SGs~DGsI~IWDl--~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWD--l~t~~li~tl~g 1278 (1349)
++ +.+.+|...+|.+ .++.... +..+........|+|++..++..+..++...+|. ..++..... ..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~ 325 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRR-------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TF 325 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEE-------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ec
Confidence 54 4667887666654 4433221 1223334456789999887765554445556665 445543322 22
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCC
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETG 1341 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DG---tVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS~DG 1341 (1349)
+.......+|+|||++|+..+.++ .|.+||+.+++... +..+.......| +|+.|+.++.++
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecC
Confidence 333445678999999998777554 69999998887543 332222333344 677766665443
No 254
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.52 E-value=5.3e-06 Score=93.34 Aligned_cols=256 Identities=10% Similarity=0.048 Sum_probs=162.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEecCCCCe
Q 000694 1079 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPI 1157 (1349)
Q Consensus 1079 dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V 1157 (1349)
++++|+.+.- .+.|=|.++-+. .+-+ .--+.|.-+.|..|.-+++ ....|+.|.+|++...+..+....+ ..++
T Consensus 20 g~yiAs~~~y-rlviRd~~tlq~--~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agl 94 (447)
T KOG4497|consen 20 GNYIASLSRY-RLVIRDSETLQL--HQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGL 94 (447)
T ss_pred CCeeeeeeee-EEEEeccchhhH--HHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcc
Confidence 3467777765 777778777442 1111 1235678889998887766 4567889999999888876655444 3344
Q ss_pred E--EecCCCCE-EEEEecCCeEEEEecCCcceeec--cCCCeEEEEe-eCCEEEEEeC----------------------
Q 000694 1158 R--KLDTYGKT-IFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSV-VQGKIYIGCM---------------------- 1209 (1349)
Q Consensus 1158 ~--sLs~~g~~-LvsgS~DgtIkVWDl~~~~~~~~--~~~~V~~La~-~dg~LlSGs~---------------------- 1209 (1349)
. +++|+|.. +.+...+-.|.||.+........ ..+++..++| ++|++.+-..
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 4 37899955 55667888999999985433322 2334778888 7887654221
Q ss_pred ---------------CCcEEEEEccCCcccccccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-
Q 000694 1210 ---------------DSSIQELAVSNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ- 1272 (1349)
Q Consensus 1210 ---------------DGsI~IWDl~t~~~~~i~~~lk~~~~-h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l- 1272 (1349)
+..+.+||---.- +.+.- -+-.+..+.++|.+.+++.++. |+.+++.+--+.+.
T Consensus 175 ~~dT~DltgieWsPdg~~laVwd~~Ley--------kv~aYe~~lG~k~v~wsP~~qflavGsy-D~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAVWDNVLEY--------KVYAYERGLGLKFVEWSPCNQFLAVGSY-DQMLRVLNHFTWKPF 245 (447)
T ss_pred CCCcccccCceECCCCcEEEEecchhhh--------eeeeeeeccceeEEEeccccceEEeecc-chhhhhhceeeeeeh
Confidence 1222333221100 00111 1356778888998888877764 54555544111000
Q ss_pred -----------------------------------------------------------EEEec------CCCCCeEEEE
Q 000694 1273 -----------------------------------------------------------ISIAP------EKGTTIQAMA 1287 (1349)
Q Consensus 1273 -----------------------------------------------------------i~tl~------gH~~~VtsLa 1287 (1349)
+..++ .....+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00111 1122566789
Q ss_pred EecCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECCCcEEEeeC
Q 000694 1288 VVEDFIYLNYNSS--ASSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1288 fSPDg~~LaSGS~--DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~--~LaSGS~DGtIrIWD~ 1348 (1349)
|++|..|++|-.. -+.+.+||++..+....+....+|.++.||+. .|+.+....++++|.|
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 9999999999763 36799999998887777777778999999854 5666666667999976
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=8.8e-07 Score=98.68 Aligned_cols=266 Identities=16% Similarity=0.206 Sum_probs=159.4
Q ss_pred CCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCc---eeEEEEeccCC------------CcEEEEEEcCCCC--EEEE
Q 000694 1068 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---AMLVWDVKEHR------------KAVTSFSLFEPGE--SLLS 1128 (1349)
Q Consensus 1068 H~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~---~~~i~tL~gHs------------s~VtsLafSpdg~--~LaS 1128 (1349)
..+.|+++.|. +.++++|...|.|.+|.-+... ......|++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999995 4489999999999999876532 12233456665 3578888876553 4566
Q ss_pred EeCCCeEEEEEccCCeEEEEEE--------ecCCCCeEEec-------CCCCEEEEEecCCeEEEEecCCcceeeccCCC
Q 000694 1129 GSADKTIGVWQMVQRKLELIEV--------IATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG 1193 (1349)
Q Consensus 1129 GS~DGtIrVWDl~tg~~~~~~~--------~~h~~~V~sLs-------~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~ 1193 (1349)
.+.|++|++|.+....+..... ...++++++.. .....++++.. . ++| .-.+...
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-~--rvy-------aNaH~yh 174 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-C--RVY-------ANAHPYH 174 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc-c--eec-------cccceeE
Confidence 6779999999987654322111 11223333311 01111221110 0 111 0112223
Q ss_pred eEEEEe-eCCEEEEEeCCCcEEEEEccCC--c--cccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1194 IKSMSV-VQGKIYIGCMDSSIQELAVSNN--V--EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1194 V~~La~-~dg~LlSGs~DGsI~IWDl~t~--~--~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
+.++.+ .+...+....|-.|.+|++.-. . ...+. | ..+..-...|++..|||........+...|.|++-|++
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiK-P-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIK-P-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEecc-C-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 888888 6666666778899999988542 1 11110 0 00011135678889999876666666678899999987
Q ss_pred CCCe----------------EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCC---------
Q 000694 1269 RKPQ----------------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ-QKVGRISAGS--------- 1322 (1349)
Q Consensus 1269 t~~l----------------i~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg-~~l~sl~~hs--------- 1322 (1349)
...+ ..-+.+-...|..+.|+++|+++++-+ =-+|+|||.... .++.++..|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 3211 011122234788999999999999875 367999998754 4677775321
Q ss_pred ----Ce---EEEEEcCC--EEEEEECCCcEEEe
Q 000694 1323 ----KI---TSLLTAND--IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1323 ----~V---tsLs~dg~--~LaSGS~DGtIrIW 1346 (1349)
.| ..+.|+|+ .+.+|+..+...+|
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeee
Confidence 23 23445543 77777776665554
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.47 E-value=5.4e-06 Score=94.03 Aligned_cols=239 Identities=12% Similarity=0.091 Sum_probs=154.7
Q ss_pred CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCCeEEEEEEecCCCCeEEe--cCCCCEEEEEecCCe
Q 000694 1099 QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM-VQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHR 1175 (1349)
Q Consensus 1099 g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl-~tg~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~Dgt 1175 (1349)
.++..++.++||.+.|+....-|...-+++.+.|.++|||-- +.|+.-.........+++++ ......+++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 344556778999999999988888888999999999999953 34544322323334445554 466778888888899
Q ss_pred EEEEecCCcc------eeecc-CCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEc
Q 000694 1176 MKVIDSSRTL------KDIYR-SKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY 1246 (1349)
Q Consensus 1176 IkVWDl~~~~------~~~~~-~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~ 1246 (1349)
+.-+.+.... +.... ...+..+.| +...+++.+.|..+.---.+.+... ++ ....+.+..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l----------g~-Y~~~~~~t~ 160 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL----------GG-YNFETPASA 160 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc----------cc-eEeeccCCC
Confidence 9888775321 11111 122666666 6667888888888874434443210 00 000000101
Q ss_pred CCceEEEEE-ecCCCeEEE--EECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCCC
Q 000694 1247 KDWLYSASS-SVEGSNIKE--WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV-GRISAGS 1322 (1349)
Q Consensus 1247 pd~i~las~-S~dDgtIrI--WDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l-~sl~~hs 1322 (1349)
++......+ +...|.|.. ...+.-.++.++.+|.+.+.+++|.|....+.+|..|..|.+||+...+-+ ..+.+|.
T Consensus 161 ~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 161 LQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred CceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 111111111 111223332 233556788999999999999999999999999999999999998765533 4455544
Q ss_pred -CeEEEEE--cCCEEEEEECCCcEEEeeC
Q 000694 1323 -KITSLLT--ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1323 -~VtsLs~--dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|..+.. .-+.+++++.||.|.+|+.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 4777765 3668999999999999974
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.46 E-value=4.7e-06 Score=91.02 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCceEEEEE-ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCC
Q 000694 1237 SKPINSLVVYKDWLYSASS-SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQ 1312 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~-S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D---GtVrVWDl~tg 1312 (1349)
..+|..++|+|++..++.. +..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++|+.+ |.|.+||..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3569999999997655433 3345689999997 55666654 5678899999999999998744 67999999999
Q ss_pred cEEEEEeCCCCeEEEEEc--CCEEEEEEC------CCcEEEeeC
Q 000694 1313 QKVGRISAGSKITSLLTA--NDIVLCGTE------TGLIKGWIP 1348 (1349)
Q Consensus 1313 ~~l~sl~~hs~VtsLs~d--g~~LaSGS~------DGtIrIWD~ 1348 (1349)
+.+....+. .++.++|+ |++|++++. |+.++||+.
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 998887654 46777774 788888764 788999973
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00015 Score=85.80 Aligned_cols=225 Identities=11% Similarity=0.100 Sum_probs=136.8
Q ss_pred CCCcEEEEECCCCceeEEEEeccC-------CCcEEEEEEcCCCCEEEEEe-C-CCeEEEEEccCCeEEEEEEecCCCCe
Q 000694 1087 SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGS-A-DKTIGVWQMVQRKLELIEVIATKEPI 1157 (1349)
Q Consensus 1087 ~DGtIrVWDl~tg~~~~i~tL~gH-------ss~VtsLafSpdg~~LaSGS-~-DGtIrVWDl~tg~~~~~~~~~h~~~V 1157 (1349)
.+..|.+||..+.+. +..+.-. ......++++|||++|+... . +..|-+.|+.+++.+.....+....+
T Consensus 75 ~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred CCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 588999999999876 5555421 12334788999999988765 4 79999999999987654433222222
Q ss_pred EEecCCCCEEEEEecCCeEEEEecC--Ccc----eeeccCCC----eEEEE-ee-CCEEEEEeCCCcEEEEEccCCcccc
Q 000694 1158 RKLDTYGKTIFASTQGHRMKVIDSS--RTL----KDIYRSKG----IKSMS-VV-QGKIYIGCMDSSIQELAVSNNVERE 1225 (1349)
Q Consensus 1158 ~sLs~~g~~LvsgS~DgtIkVWDl~--~~~----~~~~~~~~----V~~La-~~-dg~LlSGs~DGsI~IWDl~t~~~~~ 1225 (1349)
.... .....+.+.||........ +.. ..++.... .+- . ++ +|..+-.+..|+|.+.|+.......
T Consensus 153 y~t~--e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 153 FPTA--NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKF 229 (352)
T ss_pred EEec--CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCccee
Confidence 2211 1112222344443332222 110 01111100 000 1 22 6666655555999999975542111
Q ss_pred c-----cc-c--ccccccCCCCeEEEEEcCCceEEEEEe---------cCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 000694 1226 I-----KA-P--FKSWRLQSKPINSLVVYKDWLYSASSS---------VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1226 i-----~~-~--lk~~~~h~~~I~sL~~~pd~i~las~S---------~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf 1288 (1349)
. .. . -.-|.. ..+.-+++++++..+.... ..++.|.++|..+++.+..+.. +..+..+++
T Consensus 230 ~~~~~~~~~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iav 306 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINV 306 (352)
T ss_pred cceeeeccccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEE
Confidence 1 00 0 012222 2333488998865554421 1225899999999999988773 557999999
Q ss_pred ecCCC-EEEEEe-CCCcEEEEECCCCcEEEEEe
Q 000694 1289 VEDFI-YLNYNS-SASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1289 SPDg~-~LaSGS-~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
+|||+ +|++.. .++.|.|.|..+++.+.++.
T Consensus 307 S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 307 SQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 99999 777665 67889999999999999984
No 259
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.44 E-value=1.4e-07 Score=109.80 Aligned_cols=181 Identities=8% Similarity=0.093 Sum_probs=146.4
Q ss_pred EecCCCCEEEEEecCCeEEEEecCCcce--eeccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCcccccccccccccc
Q 000694 1159 KLDTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1159 sLs~~g~~LvsgS~DgtIkVWDl~~~~~--~~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~ 1235 (1349)
.++.+|..++.|+..|.+..+|+..... .+.....|.++.| .+..+++......+++||-..-+...+.
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk-------- 207 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK-------- 207 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh--------
Confidence 3567899999999999999999974322 2233445888888 6667778888899999997765544331
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
....+..+.|-|....+++.+ +.|.++.-|+.+|+.+..+....+.+..+.-+|-...+-+|...|+|.+|.....+++
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~-~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAAS-EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecc-cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 125577788888876666654 6779999999999999998888888999999999999999999999999999998888
Q ss_pred EEEeC-CCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1316 GRISA-GSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1316 ~sl~~-hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
..+-. .++|.+++++ |+++++.|.|..++|||.
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 77664 5569999986 889999999999999995
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=7.9e-05 Score=98.53 Aligned_cols=272 Identities=12% Similarity=0.077 Sum_probs=173.4
Q ss_pred CCCCEEEEEE-cC-CEEEEEECCCcEEEE----ECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1068 CSGAVTALIY-YK-GLLCSGFSDGSIKMW----DIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1068 H~~~Vt~Laf-sd-g~LaSGS~DGtIrVW----Dl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
..+.|.++.| .+ +.++.+..+|.|.+. +..+.....+..+ ..+|.+++||||+..|+..+.+|++.+-+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4578889998 34 469999999999999 7777666555555 4689999999999999988888888875421
Q ss_pred ----C---------Ce--EEE-------EEEe--------------------------cCCCCeEEecCCCCEEEEEec-
Q 000694 1142 ----Q---------RK--LEL-------IEVI--------------------------ATKEPIRKLDTYGKTIFASTQ- 1172 (1349)
Q Consensus 1142 ----t---------g~--~~~-------~~~~--------------------------~h~~~V~sLs~~g~~LvsgS~- 1172 (1349)
. |. .+. +.+. .....--+|.+||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 10 000 0000 001112246688999888774
Q ss_pred --C---CeEEEEecCCcceeeccCCC--eEEEEe-eCCEEEEEeC----CCcEEEEEccCCccccccccccccccCCCCe
Q 000694 1173 --G---HRMKVIDSSRTLKDIYRSKG--IKSMSV-VQGKIYIGCM----DSSIQELAVSNNVEREIKAPFKSWRLQSKPI 1240 (1349)
Q Consensus 1173 --D---gtIkVWDl~~~~~~~~~~~~--V~~La~-~dg~LlSGs~----DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I 1240 (1349)
+ ..++||+-+|.......... -.+++| |.|.++++.. ...|.+|.-+..+...+..+ +......+
T Consensus 231 ~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~---~~~~~~~v 307 (928)
T PF04762_consen 231 PETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR---FDPEEEKV 307 (928)
T ss_pred cCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC---CCCCCcee
Confidence 2 47999999876554443211 456778 8888887654 35666666555444443111 13456788
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEec-CCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE----CCCC
Q 000694 1241 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAP-EKGTTIQAMAVVED-FIYLNYNSSASSLQIWL----RGTQ 1312 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dDgtIrIWDl~t~~l--i~tl~-gH~~~VtsLafSPD-g~~LaSGS~DGtVrVWD----l~tg 1312 (1349)
..+.|++++..++... .| .|.+|-..+..- .+.+. .....+..+.|+|. ...|..++.+|.+..++ ...+
T Consensus 308 ~~l~Wn~ds~iLAv~~-~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 308 IELAWNSDSEILAVWL-ED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eEEEECCCCCEEEEEe-cC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 9999999988887765 33 599999877432 22222 12334555899984 44566666666665542 2211
Q ss_pred --------cEEEEE------------------------eCCCCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1313 --------QKVGRI------------------------SAGSKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1313 --------~~l~sl------------------------~~hs~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
..+..+ .-.+.|.+++|. +..+++-..||+|.+|.
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 112221 223457888885 44599999999999987
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.40 E-value=4.4e-06 Score=93.21 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=111.1
Q ss_pred EEEEcC--CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcc-CCeEEEEE
Q 000694 1074 ALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMV-QRKLELIE 1149 (1349)
Q Consensus 1074 ~Lafsd--g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~-tg~~~~~~ 1149 (1349)
++.|+. ..++++..+|.+.+-+........++++++|.-......|+... +.+++||.|+.+..||++ .++.+...
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 445542 36999999999997776666665667899999999999998544 678899999999999998 45555555
Q ss_pred EecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcceeec---cCCCeEEEEe-e--CCEEEEEeCCCcEEEEEccC
Q 000694 1150 VIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLKDIY---RSKGIKSMSV-V--QGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1150 ~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~~~~~---~~~~V~~La~-~--dg~LlSGs~DGsI~IWDl~t 1220 (1349)
...|...|.++. +.+..+++|+.|..|++||.+...+..+ .+.+|..+.. | .+.++++|.-+-.++.+...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 566788888875 5677999999999999999984333333 3455777776 3 34566666666677777766
Q ss_pred Cc
Q 000694 1221 NV 1222 (1349)
Q Consensus 1221 ~~ 1222 (1349)
+.
T Consensus 286 ~~ 287 (339)
T KOG0280|consen 286 KV 287 (339)
T ss_pred cc
Confidence 53
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=9.3e-05 Score=90.52 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=136.6
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE--E-EEEeCCC--eEEEEEccCCeEEEEEEecCCCCeEEecCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--L-LSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTY 1163 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~--L-aSGS~DG--tIrVWDl~tg~~~~~~~~~h~~~V~sLs~~ 1163 (1349)
+.|.+.|..++.. +.+..+...+.+-.|+|||+. + ++...+| .|.+.++.+|+............--.++++
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 4677778877654 334445566778899999975 2 2444444 577778887765433222222223458899
Q ss_pred CCEEEEEec-CC--e--EEEEecCC----cceeeccCC-C-eEEEEe-eCCE-EEEEe-CCCcEEEEEc--cCCcccccc
Q 000694 1164 GKTIFASTQ-GH--R--MKVIDSSR----TLKDIYRSK-G-IKSMSV-VQGK-IYIGC-MDSSIQELAV--SNNVEREIK 1227 (1349)
Q Consensus 1164 g~~LvsgS~-Dg--t--IkVWDl~~----~~~~~~~~~-~-V~~La~-~dg~-LlSGs-~DGsI~IWDl--~t~~~~~i~ 1227 (1349)
|+.++..+. +| . +..|++.. ....+.... . .....| |||. ++..+ .+|...+|.+ ..... ..
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~- 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SP- 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-ce-
Confidence 998887663 22 2 34466542 222222222 2 345677 8875 55444 4665555544 32110 00
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC---CC
Q 000694 1228 APFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS---AS 1302 (1349)
Q Consensus 1228 ~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD--gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~---DG 1302 (1349)
+.+......+....++|++..++..+..+ ..|.+||+.+++.... ......+....|+|||++|+..+. ++
T Consensus 320 ---~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 320 ---RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred ---EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 11222334556788999988776554333 4699999988876443 333445678999999998875432 35
Q ss_pred cEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 000694 1303 SLQIWLRGTQQKVGRISAGSKITSLLTA 1330 (1349)
Q Consensus 1303 tVrVWDl~tg~~l~sl~~hs~VtsLs~d 1330 (1349)
.|.+||+.+++......+.+.+...+|+
T Consensus 396 ~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 396 ELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred eEEEEECCCCCEEEeecCCCcccCceec
Confidence 6888898887765444444445555554
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.36 E-value=4.3e-05 Score=92.34 Aligned_cols=204 Identities=14% Similarity=0.039 Sum_probs=117.3
Q ss_pred cCCCCEEEEEEc-CC-EEEEEECC---CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 000694 1067 KCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGVW 1138 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg-~LaSGS~D---GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~DG--tIrVW 1138 (1349)
.+.+.+.+.+|+ +| +|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+|
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 456678888895 44 56665543 479999999886533 334556677899999998776 445444 58888
Q ss_pred EccCCeEEEEEEecCCCCe--EEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEE
Q 000694 1139 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V--~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IW 1216 (1349)
|+.++.... ...+.... ..+.++++.+++++..+ ....|+++
T Consensus 264 d~~~~~~~~--l~~~~~~~~~~~~s~dg~~l~~~s~~~----------------------------------g~~~iy~~ 307 (417)
T TIGR02800 264 DLDGKQLTR--LTNGPGIDTEPSWSPDGKSIAFTSDRG----------------------------------GSPQIYMM 307 (417)
T ss_pred ECCCCCEEE--CCCCCCCCCCEEECCCCCEEEEEECCC----------------------------------CCceEEEE
Confidence 988775432 22222111 13445555555443211 01134445
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD--gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
|+.++....+ ..+........++|++.+++..+.++ ..|.+||+.++... .+... .......|+|||++
T Consensus 308 d~~~~~~~~l-------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 308 DADGGEVRRL-------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred ECCCCCEEEe-------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCE
Confidence 5544332111 12233445677888877666554332 26889998876543 33322 23445689999999
Q ss_pred EEEEeCCC---cEEEEECCCCcEEEEEe
Q 000694 1295 LNYNSSAS---SLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1295 LaSGS~DG---tVrVWDl~tg~~l~sl~ 1319 (1349)
|+..+.++ .+.+.+. ++.....+.
T Consensus 379 l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 379 ILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 88877654 2344443 344444444
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.35 E-value=0.00021 Score=96.13 Aligned_cols=250 Identities=12% Similarity=0.064 Sum_probs=137.1
Q ss_pred EEEEc--CC-EEEEEECCCcEEEEECCCCceeEEEEecc--C------------CCcEEEEEEcCCCCEEEEE-eCCCeE
Q 000694 1074 ALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKE--H------------RKAVTSFSLFEPGESLLSG-SADKTI 1135 (1349)
Q Consensus 1074 ~Lafs--dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~g--H------------ss~VtsLafSpdg~~LaSG-S~DGtI 1135 (1349)
.++++ ++ .+++-+.++.|++||..+.. +..+.+ . -.....++++++++.|+.+ ..++.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45663 45 56677788899999987542 222221 1 1235789999988866554 445789
Q ss_pred EEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-e-CCEEEE-EeCCCc
Q 000694 1136 GVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-V-QGKIYI-GCMDSS 1212 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~-dg~LlS-Gs~DGs 1212 (1349)
+++|..++.... +.+.. .......+ +..+.. .....-..+++ + ++.++. .+.++.
T Consensus 649 r~id~~~~~V~t--lag~G--~~g~~~~g------g~~~~~------------~~ln~P~gVa~dp~~g~LyVad~~~~~ 706 (1057)
T PLN02919 649 REIDFVNETVRT--LAGNG--TKGSDYQG------GKKGTS------------QVLNSPWDVCFEPVNEKVYIAMAGQHQ 706 (1057)
T ss_pred EEEecCCCEEEE--EeccC--cccCCCCC------ChhhhH------------hhcCCCeEEEEecCCCeEEEEECCCCe
Confidence 999987765321 11100 00000000 000000 00011123444 3 344433 344556
Q ss_pred EEEEEccCCcccccccc--ccccc------cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC------
Q 000694 1213 IQELAVSNNVEREIKAP--FKSWR------LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE------ 1278 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~--lk~~~------~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g------ 1278 (1349)
|++||..++....+... ..... ........++++|++..+......++.|++||+.++.......+
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 66666555432111000 00000 01123456788887654444444567899999876543211100
Q ss_pred ---------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------------CCeEEEEE
Q 000694 1279 ---------------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------------SKITSLLT 1329 (1349)
Q Consensus 1279 ---------------H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h--------------s~VtsLs~ 1329 (1349)
......+++++++|..+++-+.++.|++||..++........+ .....+++
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 0113468999999999999999999999999887665333211 12455665
Q ss_pred --cCCEEEEEECCCcEEEeeC
Q 000694 1330 --ANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1330 --dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+|+.+++.+.+++|++||.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEEC
Confidence 5888888889999999985
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.33 E-value=5.6e-06 Score=90.96 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-------------EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEe
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-------------LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~-------------~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWD 1180 (1349)
|+.+.++. ...|+++..++.+......++.+. +.......++-...+..++.++++..||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 45555543 334666666666655554333222 1111111223333456678899999999999999
Q ss_pred cCCcceeeccCCCe-----EEEEe-eCCEEEEEeC------CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC
Q 000694 1181 SSRTLKDIYRSKGI-----KSMSV-VQGKIYIGCM------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 1248 (1349)
Q Consensus 1181 l~~~~~~~~~~~~V-----~~La~-~dg~LlSGs~------DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd 1248 (1349)
.+. .........+ .+..+ ..+.++..+. -+..+.|+++..+... .-......+.+++.||.
T Consensus 118 ~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~------~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI------PSKKALDAVTALCSHPA 190 (319)
T ss_pred chH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc------ccccccccchhhhCCcc
Confidence 874 1111111111 11111 3344443222 2344455554332110 00112344899999999
Q ss_pred ceEEEEEecCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEE----------
Q 000694 1249 WLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQKVG---------- 1316 (1349)
Q Consensus 1249 ~i~las~S~dDgtIrIWDl~t~-~li~tl~gH~~~VtsLafSP-Dg~~LaSGS~DGtVrVWDl~tg~~l~---------- 1316 (1349)
...++.++.+||.+.+||.++. .+...+..|..+++.+-|+| ++..|.+++.||.+.-||..+ +.+.
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~ 269 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISS 269 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccc
Confidence 8888888889999999999875 44567788999999999998 678999999999999999763 1111
Q ss_pred --------E-Ee--C--CC---CeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1317 --------R-IS--A--GS---KITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1317 --------s-l~--~--hs---~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
. +. + .+ .|+++...|..|++|+.-+-|++++-
T Consensus 270 WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 270 WLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred cccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEecc
Confidence 1 11 0 11 14444455999999999999999864
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00058 Score=78.90 Aligned_cols=255 Identities=9% Similarity=0.089 Sum_probs=157.5
Q ss_pred CCcEEEEECCC--CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccC--CeEEEEEEe---cCCCCe
Q 000694 1088 DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQ--RKLELIEVI---ATKEPI 1157 (1349)
Q Consensus 1088 DGtIrVWDl~t--g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D---GtIrVWDl~t--g~~~~~~~~---~h~~~V 1157 (1349)
+.-|.+|++.+ ++..... +-.+.+.++-|+|+|++++|+++..+ |.|-.|.++. |++...... ++...-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 46799999874 3332222 33567889999999999999988654 7777776654 665432211 222123
Q ss_pred EEecCCCCEEEEEec-CCeEEEEecCC--cce----eecc----------CCCeEEEEe-eCCEEEEEeC--CCcEEEEE
Q 000694 1158 RKLDTYGKTIFASTQ-GHRMKVIDSSR--TLK----DIYR----------SKGIKSMSV-VQGKIYIGCM--DSSIQELA 1217 (1349)
Q Consensus 1158 ~sLs~~g~~LvsgS~-DgtIkVWDl~~--~~~----~~~~----------~~~V~~La~-~dg~LlSGs~--DGsI~IWD 1217 (1349)
.+++.++..++++.- .|.|.++-++. ... ...+ ...+.+..+ |+++++.+++ --.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 357788888887764 46788887752 111 1111 112666667 8886665443 44688999
Q ss_pred ccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecC---------CCCCeEEEE
Q 000694 1218 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPE---------KGTTIQAMA 1287 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~li~tl~g---------H~~~VtsLa 1287 (1349)
+..+...... +.. -..+...+.|.|||++.++-...--+++|.+|..+.. ..+..++. ...+..++.
T Consensus 174 ~~dg~L~~~~-~~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 174 LDDGKLTPAD-PAE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred cccCcccccc-ccc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9977533221 111 1345667889999999887666656789999998762 22222221 123577888
Q ss_pred EecCCCEEEEEe-CCCcEEEEECC--CCcEE--EEEeCCCC-eEEEEE--cCCEEEEEECCC-cEEEe
Q 000694 1288 VVEDFIYLNYNS-SASSLQIWLRG--TQQKV--GRISAGSK-ITSLLT--ANDIVLCGTETG-LIKGW 1346 (1349)
Q Consensus 1288 fSPDg~~LaSGS-~DGtVrVWDl~--tg~~l--~sl~~hs~-VtsLs~--dg~~LaSGS~DG-tIrIW 1346 (1349)
++|||++|.++. ....|.+|.+. +++.. .....++. ...+.+ +|++|++++.++ +|.+|
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 999999998876 33467777544 33322 22222333 455555 588888887654 46665
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=0.00099 Score=77.01 Aligned_cols=263 Identities=11% Similarity=0.115 Sum_probs=167.5
Q ss_pred ccCCCCEEEEEEcC-C-EEEEEECC---CcEEEEECCC--CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEE
Q 000694 1066 HKCSGAVTALIYYK-G-LLCSGFSD---GSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGV 1137 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafsd-g-~LaSGS~D---GtIrVWDl~t--g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~-DGtIrV 1137 (1349)
..+.+..+-|+|++ + .|.++-.+ |.|-.|.++. |+...+.....-..+-+.++++++|++++++.. -|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 34567788888863 3 46666544 6777766654 666555444333344588999999999998765 578999
Q ss_pred EEccC-CeEEEE-EEecCCCC----------eEE--ecCCCCEEEEEecCC-eEEEEecCCc------ceeeccCCCeEE
Q 000694 1138 WQMVQ-RKLELI-EVIATKEP----------IRK--LDTYGKTIFASTQGH-RMKVIDSSRT------LKDIYRSKGIKS 1196 (1349)
Q Consensus 1138 WDl~t-g~~~~~-~~~~h~~~----------V~s--Ls~~g~~LvsgS~Dg-tIkVWDl~~~------~~~~~~~~~V~~ 1196 (1349)
+-++. |.+... ....|.+. +.. +.|+++.+++..-+- .|.+|++... ......+.+-+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 98865 543221 22223322 322 668999998887543 6899998731 122344556889
Q ss_pred EEe-eCCEEE-EEe-CCCcEEEEEccCC--ccccccccc---cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1197 MSV-VQGKIY-IGC-MDSSIQELAVSNN--VEREIKAPF---KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1197 La~-~dg~Ll-SGs-~DGsI~IWDl~t~--~~~~i~~~l---k~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
+.| |+++++ +.+ -+++|-+|..... +...++... ..+. .......|.+++++.++.++......|-+|.+.
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999 888876 334 4999999999873 322221111 1111 235567788999999998876555678888874
Q ss_pred C--CCe--EEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEEE--CCCCcEEEEEe--CCCCeEEEEE
Q 000694 1269 R--KPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSA-SSLQIWL--RGTQQKVGRIS--AGSKITSLLT 1329 (1349)
Q Consensus 1269 t--~~l--i~tl~gH~~~VtsLafSPDg~~LaSGS~D-GtVrVWD--l~tg~~l~sl~--~hs~VtsLs~ 1329 (1349)
. +++ +.....+....+...|+|+|++|++++.| ..|.+|. -.+|+.-.... ......|+.|
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 3 322 23334455668899999999999888854 5688884 44555433322 1223456654
No 268
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.27 E-value=0.00033 Score=77.66 Aligned_cols=217 Identities=17% Similarity=0.110 Sum_probs=130.0
Q ss_pred CCCcEEEEECCCCceeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE-ecC
Q 000694 1087 SDGSIKMWDIKKQSAMLVWDVKE---HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK-LDT 1162 (1349)
Q Consensus 1087 ~DGtIrVWDl~tg~~~~i~tL~g---Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s-Ls~ 1162 (1349)
.+|+|..||..+|+. +....- ....+ +. ..+++..+++++.++.+..||..+|+........ ..+.. ...
T Consensus 1 ~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~~~~~~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKE--LWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP--GPISGAPVV 74 (238)
T ss_dssp -TSEEEEEETTTTEE--EEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS--SCGGSGEEE
T ss_pred CCCEEEEEECCCCCE--EEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc--ccccceeee
Confidence 378999999998875 444431 22222 11 2236777888899999999999999987655442 22111 245
Q ss_pred CCCEEEEEecCCeEEEEecC-Ccceee-ccC----C---CeEEEEeeCCEEEEEeCCCcEEEEEccCCcccccccccccc
Q 000694 1163 YGKTIFASTQGHRMKVIDSS-RTLKDI-YRS----K---GIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1163 ~g~~LvsgS~DgtIkVWDl~-~~~~~~-~~~----~---~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
.++.+++++.++.+..+|.. +...-. ... . ......+.++.+++++.++.|..+|..+|+..-.... ..
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~- 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GE- 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-ST-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CC-
Confidence 67778888888899999965 333222 111 1 1222333577888899899999999999864211100 00
Q ss_pred ccCCCC-------eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000694 1234 RLQSKP-------INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI 1306 (1349)
Q Consensus 1234 ~~h~~~-------I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrV 1306 (1349)
...... ...+.+..+ .+...+.++..+.+ |..+++.+.... ...+... ..+++..++.++.+|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEE
T ss_pred CCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEE
Confidence 000011 123333334 22223222334555 999988664333 2223331 3567888888889999999
Q ss_pred EECCCCcEEEE
Q 000694 1307 WLRGTQQKVGR 1317 (1349)
Q Consensus 1307 WDl~tg~~l~s 1317 (1349)
||+.+|+.+.+
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999998754
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=1.9e-05 Score=95.70 Aligned_cols=237 Identities=10% Similarity=0.013 Sum_probs=154.4
Q ss_pred eecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1063 EASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
++..||++.|.-+.|+++ .|-|...+|.|.||-+-.|.+..-..-...++.|.+++|+.||..+...-.||.|.|=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 557899999999999754 599999999999999987764221122335678999999999999999999999888777
Q ss_pred cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCccee--------------eccCCCeEEEEe-------
Q 000694 1141 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--------------IYRSKGIKSMSV------- 1199 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~--------------~~~~~~V~~La~------- 1199 (1349)
+..+.--..+.+..-.-..++++...++.+-.+|.+.+||..+.... ...++.+-.+.+
T Consensus 145 dGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~ 224 (1189)
T KOG2041|consen 145 DGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP 224 (1189)
T ss_pred ccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence 55443222221111111235677778888888899999998752211 111122434443
Q ss_pred --eCC-EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC--------CCeEEEEECC
Q 000694 1200 --VQG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--------GSNIKEWRRH 1268 (1349)
Q Consensus 1200 --~dg-~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d--------DgtIrIWDl~ 1268 (1349)
|+. .++.+-..|.+.+..-.+.... ..-..+-.+....|++++.+++.++.+ .+.|++|..
T Consensus 225 v~pdrP~lavcy~nGr~QiMR~eND~~P-------vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 225 VPPDRPRLAVCYANGRMQIMRSENDPEP-------VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred CCCCCCEEEEEEcCceehhhhhcCCCCC-------eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-
Confidence 222 3556777787776543332111 111123456777888888777665421 135666654
Q ss_pred CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1269 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1269 t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
-|..+.+++..+..|++++|-..|-.++.+- |+.|.+=+
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 4778888988899999999988887776653 66665533
No 270
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.25 E-value=0.00024 Score=85.90 Aligned_cols=259 Identities=10% Similarity=0.042 Sum_probs=153.9
Q ss_pred EEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCC--C--------cE-EEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 000694 1076 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--K--------AV-TSFSLFEPGESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1076 afsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHs--s--------~V-tsLafSpdg~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
.+.++.+++++.+|.+.-+|..+|+. +....-.. . .+ ..+.. ++..++.++.+|.+..+|..+|+
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 44688999999999999999999875 33332111 0 00 01111 35667888899999999999998
Q ss_pred EEEEEEecCCCCeEE-ecCCCCEEEEEecCCeEEEEecCC-cceeeccCC-C------eEEEEeeCCEEEEEeCCCcEEE
Q 000694 1145 LELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSK-G------IKSMSVVQGKIYIGCMDSSIQE 1215 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~s-Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~~~-~------V~~La~~dg~LlSGs~DGsI~I 1215 (1349)
........ ..+.+ -...++.+++++.++.+..+|... ...-..... . ...-.+.++.++.++.+|.+..
T Consensus 142 ~~W~~~~~--~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 142 VAWQTKVA--GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred CcccccCC--CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEE
Confidence 76543322 22222 112356777888888888888762 221111110 0 0111124677888889999999
Q ss_pred EEccCCccccccccccccccCC------CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1216 LAVSNNVEREIKAPFKSWRLQS------KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1216 WDl~t~~~~~i~~~lk~~~~h~------~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
+|..+++..-....... .+.. ....+.....+.+++.+ .++.+..+|..+|+.+-.... .....+.
T Consensus 220 ~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~-- 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA-- 291 (394)
T ss_pred EEccCChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE--
Confidence 99988853211000000 0000 00011122334444433 367899999999887655431 1111222
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1290 EDFIYLNYNSSASSLQIWLRGTQQKVGRISA--GSKITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1290 PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~--hs~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.++..++.++.||.+..+|..+|+.+.+... +....+....+..|+.++.||.+...|+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 2466777788899999999999988765442 2223333445778888999999988774
No 271
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.22 E-value=0.00039 Score=77.07 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=129.7
Q ss_pred CCCeEEEEEccCCeEEEEEEecC--CCCeEEecCCCCEEEEEecCCeEEEEecC-CcceeeccC-CCe-EEEEeeCCEEE
Q 000694 1131 ADKTIGVWQMVQRKLELIEVIAT--KEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRS-KGI-KSMSVVQGKIY 1205 (1349)
Q Consensus 1131 ~DGtIrVWDl~tg~~~~~~~~~h--~~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~-~~V-~~La~~dg~Ll 1205 (1349)
.+|+|..||..+|+.+....... ...+......++.+++++.++.+..||.. +...-.... ..+ ......++.++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 37899999999999876654422 22222233478888888999999999984 443222221 111 11244788899
Q ss_pred EEeCCCcEEEEEccCCccccc-cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC--
Q 000694 1206 IGCMDSSIQELAVSNNVEREI-KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT-- 1282 (1349)
Q Consensus 1206 SGs~DGsI~IWDl~t~~~~~i-~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~-- 1282 (1349)
+++.|+.++.+|..+++..-. ...... ...........+..+..+ +.. .++.+..+|..+|+.+.........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVDGDRLY-VGT--SSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEETTEEE-EEE--TCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccceeeeEecccCCcceeeeecccccc-ccccccccCceEecCEEE-EEe--ccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 988999999999999864221 000000 000011122333333333 322 2779999999999998777654422
Q ss_pred --------eEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCCeEE-EEEcCCEEEEEECCCcEEEeeC
Q 000694 1283 --------IQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAGSKITS-LLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1283 --------VtsLafSPDg~~LaSGS~DGt-VrVWDl~tg~~l~sl~~hs~Vts-Ls~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+.+-....++ .+..++.+|. +.+ |..+++.+.... ...+.. ...++..|++++.+|.|..||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222345 7777777775 555 999999775444 333443 5677889999999999999986
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00014 Score=89.45 Aligned_cols=210 Identities=12% Similarity=0.068 Sum_probs=122.8
Q ss_pred cCCCCEEEEEEc-CC-EEEEEEC-CC--cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCe--EEEE
Q 000694 1067 KCSGAVTALIYY-KG-LLCSGFS-DG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKT--IGVW 1138 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg-~LaSGS~-DG--tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~DGt--IrVW 1138 (1349)
.+...+.+..|+ || .|+..+. +| .|.+||+.+++...+..+.+ .....+|+|||+.|+ +.+.+|. |.+|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 345677888995 55 5555443 33 58899999887644444443 344689999999876 4566665 7777
Q ss_pred EccCCeEEEEEEecCCCC--eEEecCCCCEEEEEec-CC--eEEEEecCC-cceee-ccCCCeEEEEe-eCCEEE-E-Ee
Q 000694 1139 QMVQRKLELIEVIATKEP--IRKLDTYGKTIFASTQ-GH--RMKVIDSSR-TLKDI-YRSKGIKSMSV-VQGKIY-I-GC 1208 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~--V~sLs~~g~~LvsgS~-Dg--tIkVWDl~~-~~~~~-~~~~~V~~La~-~dg~Ll-S-Gs 1208 (1349)
|+.+++... ...+... -..++++++.++..+. ++ .|.++|+.+ ..... ..........+ ++|..+ . +.
T Consensus 292 dl~tg~~~~--lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALTR--ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeEE--CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 888776532 2222222 2347899998877664 33 466667753 22222 22222333456 676543 3 33
Q ss_pred CCC--cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeE
Q 000694 1209 MDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQ 1284 (1349)
Q Consensus 1209 ~DG--sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~Vt 1284 (1349)
.++ .|.++|+.++....+ ... .......++|++..++.....++ .+.+++. ++.....+..+.+.+.
T Consensus 370 ~~g~~~I~~~dl~~g~~~~l-------t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQVL-------TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred cCCceEEEEEECCCCCeEEc-------cCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 344 455677777653322 111 11123468888876655444444 3677776 4556666666666677
Q ss_pred EEEEec
Q 000694 1285 AMAVVE 1290 (1349)
Q Consensus 1285 sLafSP 1290 (1349)
..+|+|
T Consensus 441 ~p~Wsp 446 (448)
T PRK04792 441 SPAWSP 446 (448)
T ss_pred CCccCC
Confidence 778876
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00021 Score=87.24 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=124.8
Q ss_pred ccCCCCEEEEEEc-CC-EEEEEECC---CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCC--eEEE
Q 000694 1066 HKCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGV 1137 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs-dg-~LaSGS~D---GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~DG--tIrV 1137 (1349)
..|.+.+....|+ +| +|+..+.+ ..|.+||+.+++...+..+ .+.+....|+|||+.|+ +.+.+| .|.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 3566788999995 55 56655543 3699999998875443333 34455789999999876 555555 5888
Q ss_pred EEccCCeEEEEEEecCCCCe--EEecCCCCEEEEEec-CC--eEEEEecCC-cceeec-cCCCeEEEEe-eCCEEE-EEe
Q 000694 1138 WQMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQ-GH--RMKVIDSSR-TLKDIY-RSKGIKSMSV-VQGKIY-IGC 1208 (1349)
Q Consensus 1138 WDl~tg~~~~~~~~~h~~~V--~sLs~~g~~LvsgS~-Dg--tIkVWDl~~-~~~~~~-~~~~V~~La~-~dg~Ll-SGs 1208 (1349)
||+.++.... +..+.... ..++++++.++..+. +| .|.++|+.+ ...... .........+ ++|..+ ..+
T Consensus 272 ~d~~~~~~~~--lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLSR--VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeEE--cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 8998876542 22222222 247889998877664 33 577777753 222222 1222333455 666544 333
Q ss_pred C-CC--cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCe
Q 000694 1209 M-DS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTI 1283 (1349)
Q Consensus 1209 ~-DG--sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t~~li~tl~gH~~~V 1283 (1349)
. ++ .|.+||+.++....+. . ........++|++..++..+..++ .+.+++...+ ....+..+.+.+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~lt-------~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~ 420 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRILT-------D-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEV 420 (430)
T ss_pred ccCCceEEEEEECCCCCEEEcc-------C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCc
Confidence 2 33 5888999887543221 1 111123478888877765544433 4667777543 344455455566
Q ss_pred EEEEEec
Q 000694 1284 QAMAVVE 1290 (1349)
Q Consensus 1284 tsLafSP 1290 (1349)
...+|+|
T Consensus 421 ~~p~ws~ 427 (430)
T PRK00178 421 REPSWSP 427 (430)
T ss_pred CCCccCC
Confidence 7777776
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.09 E-value=9e-06 Score=98.91 Aligned_cols=212 Identities=16% Similarity=0.210 Sum_probs=125.3
Q ss_pred ecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1064 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
..+||+..|+.+.|+ ++.+++++-|..+..||+++... ++..+..-..+-..|+|+-....+...+..+.|++||.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 468999999999995 45799999999999999998653 45555544556778999865555666677788999999
Q ss_pred cCCeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEE
Q 000694 1141 VQRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELA 1217 (1349)
Q Consensus 1141 ~tg~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWD 1217 (1349)
+.|........+|-..|..+. .....+++.+.||+|+.||.+.......
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~---------------------------- 239 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK---------------------------- 239 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc----------------------------
Confidence 887654444444544455443 2234566666666666666642211100
Q ss_pred ccCCccccccccccccccCCCC---eEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecC--
Q 000694 1218 VSNNVEREIKAPFKSWRLQSKP---INSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVED-- 1291 (1349)
Q Consensus 1218 l~t~~~~~i~~~lk~~~~h~~~---I~sL~~~pd~i~las~S~dDgtIrIWDl~t-~~li~tl~gH~~~VtsLafSPD-- 1291 (1349)
..+......|.+..-| -.++....++....-. .-++.-..|+..+ .+++..|.||...|....|-..
T Consensus 240 ------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~-~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 240 ------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQL-RCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred ------eeccccCcceeccccccCceeEeccccCCeeeeec-cccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence 0000001111111000 0111111111111000 0122334555543 4678899999988776666432
Q ss_pred --------CCEEEEEeCCCcEEEEECCC
Q 000694 1292 --------FIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1292 --------g~~LaSGS~DGtVrVWDl~t 1311 (1349)
.-.|+|=+.|.++++|-+.+
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccH
Confidence 23689999999999997543
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.08 E-value=0.00045 Score=82.27 Aligned_cols=266 Identities=12% Similarity=0.093 Sum_probs=150.4
Q ss_pred CCCCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-------------
Q 000694 1068 CSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK------------- 1133 (1349)
Q Consensus 1068 H~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DG------------- 1133 (1349)
-.-++..++++ .|..+....-.-|.+|+...+.. +..+. | ..|..+.|+|.+++|.|-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 34567788886 45544444445588999887652 34444 4 4699999999999999875443
Q ss_pred --eEEEEEccCCeEEEEEEecCCC----CeEEecCCCCEEEEEecCCeEEEEecCCcc----eeeccCCCeEEEEe-eCC
Q 000694 1134 --TIGVWQMVQRKLELIEVIATKE----PIRKLDTYGKTIFASTQGHRMKVIDSSRTL----KDIYRSKGIKSMSV-VQG 1202 (1349)
Q Consensus 1134 --tIrVWDl~tg~~~~~~~~~h~~----~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~----~~~~~~~~V~~La~-~dg 1202 (1349)
.+.|||+.+|.++......... ++..++.+..+++-. ....++++++.+.. .......++....+ |.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 4999999998876543322111 133444443333222 23345555532110 00011112222222 110
Q ss_pred ---EEE--E---EeCCC-----------------------------------------------------cEEEEEccCC
Q 000694 1203 ---KIY--I---GCMDS-----------------------------------------------------SIQELAVSNN 1221 (1349)
Q Consensus 1203 ---~Ll--S---Gs~DG-----------------------------------------------------sI~IWDl~t~ 1221 (1349)
.++ + ++.++ ++++++++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 001 0 22233 3344444321
Q ss_pred ccccccccccccccCCCCeEEEEEcCCceEEEE-EecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000694 1222 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS-SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1222 ~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las-~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
.. ++-..-.++|..+.|.|.....+. .+..+..+.++|++.. +...+ ....=+.+.|+|.+++++.++.
T Consensus 266 ~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 266 SI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred cc-------ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecC
Confidence 10 111123578888888776543333 3356678889998866 43333 3444557789999999999876
Q ss_pred C---CcEEEEECCCCcEE-EEEeCCC-CeEEEEEcCCEEEEEEC------CCcEEEeeC
Q 000694 1301 A---SSLQIWLRGTQQKV-GRISAGS-KITSLLTANDIVLCGTE------TGLIKGWIP 1348 (1349)
Q Consensus 1301 D---GtVrVWDl~tg~~l-~sl~~hs-~VtsLs~dg~~LaSGS~------DGtIrIWD~ 1348 (1349)
| |.|.+||....-.+ ..+.+.+ .....+++|+++.+... |..|+||+.
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 5 78999997765444 3666533 24445557777666543 778999984
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=5.5e-06 Score=97.50 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=125.3
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-----EEE-EEEecCCCCeEEecCCCCEEEEEecCCeE
Q 000694 1103 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-----LEL-IEVIATKEPIRKLDTYGKTIFASTQGHRM 1176 (1349)
Q Consensus 1103 ~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~-----~~~-~~~~~h~~~V~sLs~~g~~LvsgS~DgtI 1176 (1349)
.+..+.||+..|..++--.+.+.+++++.|++|++|.++... ..+ .....|+.+|.+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~----------------- 789 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHD----------------- 789 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccc-----------------
Confidence 356789999999999887788889999999999999986421 001 112234444443
Q ss_pred EEEecCCcceeeccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCcccccccccccccc---CCCCeEEEEEcCCceEE
Q 000694 1177 KVIDSSRTLKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL---QSKPINSLVVYKDWLYS 1252 (1349)
Q Consensus 1177 kVWDl~~~~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~---h~~~I~sL~~~pd~i~l 1252 (1349)
+.| .+.+ ..++.||.|++||.--++...- ..|.. .+..|.++.--...+.+
T Consensus 790 --------------------igfL~~lr-~i~ScD~giHlWDPFigr~Laq----~~dapk~~a~~~ikcl~nv~~~ili 844 (1034)
T KOG4190|consen 790 --------------------IGFLADLR-SIASCDGGIHLWDPFIGRLLAQ----MEDAPKEGAGGNIKCLENVDRHILI 844 (1034)
T ss_pred --------------------eeeeeccc-eeeeccCcceeecccccchhHh----hhcCcccCCCceeEecccCcchhee
Confidence 333 2211 2233456666666543321110 01111 23344444332223334
Q ss_pred EEEecCCCeEEEEECCCCCeEEEec-----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEE
Q 000694 1253 ASSSVEGSNIKEWRRHRKPQISIAP-----EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITS 1326 (1349)
Q Consensus 1253 as~S~dDgtIrIWDl~t~~li~tl~-----gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~Vts 1326 (1349)
+.++ ...+|+++|.+.+.-...++ +....++++++-|.|++++.|-.+|+|.+.|.++|+.+..+..-. ....
T Consensus 845 Agcs-aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq 923 (1034)
T KOG4190|consen 845 AGCS-AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ 923 (1034)
T ss_pred eecc-chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh
Confidence 4333 46689999998876655544 345678999999999999999999999999999999887765421 2222
Q ss_pred E-EEcCCEEEEEECCCcEEE-ee
Q 000694 1327 L-LTANDIVLCGTETGLIKG-WI 1347 (1349)
Q Consensus 1327 L-s~dg~~LaSGS~DGtIrI-WD 1347 (1349)
+ +++.+.|+....|.++-+ |-
T Consensus 924 laapsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 924 LAAPSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred hcCchhHHHHhhcccceeEeeeh
Confidence 2 245556666666666666 53
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00031 Score=78.80 Aligned_cols=125 Identities=10% Similarity=0.100 Sum_probs=89.9
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEE-ecCC
Q 000694 1202 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISI-APEK 1279 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~-t~~li~t-l~gH 1279 (1349)
..++++-.+|.+.+.+....... ....|..|..++....++.....++-.+++|+.+..||++ .++.+.. .+-|
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le----~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLE----KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeee----ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceee
Confidence 34666667777775555444322 2257888888888888876555455455689999999998 3444433 4568
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEEc
Q 000694 1280 GTTIQAMAVVE-DFIYLNYNSSASSLQIWLRG-TQQKVGRISAGSKITSLLTA 1330 (1349)
Q Consensus 1280 ~~~VtsLafSP-Dg~~LaSGS~DGtVrVWDl~-tg~~l~sl~~hs~VtsLs~d 1330 (1349)
...|.++.-+| .+.+++||+.|..|++||.+ -++++..-...+.|+.+.+.
T Consensus 210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred ecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEec
Confidence 88999998875 68899999999999999988 57777666656667777654
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=0.00043 Score=83.33 Aligned_cols=228 Identities=9% Similarity=0.146 Sum_probs=145.4
Q ss_pred EEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC--EEE-----EEeCCCeEEEEEccCCe
Q 000694 1073 TALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLL-----SGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1073 t~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~--~La-----SGS~DGtIrVWDl~tg~ 1144 (1349)
++..|+ |..+++=-..+.+.+|+..+-+. ..+ +-|...|+.+.++|.+. .++ .+|.-+.|++|....+.
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~-~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKT-IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccc-eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 678886 44455555567799999987432 223 33678899999998743 344 35667789999875322
Q ss_pred EE----EEEEecCCCCeEEecCCCCEEEE-Ee--c---------CCeEEEEecCCc--ceeeccCCCeEEEEe-eCCE-E
Q 000694 1145 LE----LIEVIATKEPIRKLDTYGKTIFA-ST--Q---------GHRMKVIDSSRT--LKDIYRSKGIKSMSV-VQGK-I 1204 (1349)
Q Consensus 1145 ~~----~~~~~~h~~~V~sLs~~g~~Lvs-gS--~---------DgtIkVWDl~~~--~~~~~~~~~V~~La~-~dg~-L 1204 (1349)
.. ...+...+.....+...|..+++ ++ - ..++++.++++. .........|.++.| +.+. +
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 11 01111111111123433443322 22 2 236777777743 233344556999999 6663 2
Q ss_pred E--EEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEE--EEecCCCeEEEEECCCCCeEEEecCCC
Q 000694 1205 Y--IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA--SSSVEGSNIKEWRRHRKPQISIAPEKG 1280 (1349)
Q Consensus 1205 l--SGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~la--s~S~dDgtIrIWDl~t~~li~tl~gH~ 1280 (1349)
. -|-.--.+.+||++..- +++...++-+++-++|.+.+++ +++.-.|.|-+||+.+.+++..+...
T Consensus 286 ~VvyGfMPAkvtifnlr~~~---------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~- 355 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRGKP---------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA- 355 (566)
T ss_pred EEEEecccceEEEEcCCCCE---------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-
Confidence 2 36678899999998763 3455567778889998876554 34334578999999998888887643
Q ss_pred CCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEE
Q 000694 1281 TTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~------DGtVrVWDl~tg~~l 1315 (1349)
.-+-+.|+|||.+++|+.. |+.++||+.. |..+
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 3456789999999999874 6889999863 4444
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.01 E-value=1.7e-05 Score=62.99 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=35.5
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1103 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1103 ~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
++.++.+|.++|++|+|+|++.+|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4788999999999999999999999999999999997
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.00066 Score=83.83 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=91.5
Q ss_pred ceeecccccccccccccCCCceEEEEEeeeeeecccCCCCEEEEEEcC----------C----EEEEEECCCcEEEEECC
Q 000694 1032 NVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYK----------G----LLCSGFSDGSIKMWDIK 1097 (1349)
Q Consensus 1032 ~vsw~a~ellkv~~~~~p~~~~w~~~~t~tl~~~~gH~~~Vt~Lafsd----------g----~LaSGS~DGtIrVWDl~ 1097 (1349)
...|.+.+++..+.+- ....++....++++...-|...|+.+.|.+ . .+|++...|.|.+||..
T Consensus 20 A~Dw~~~GLiAygshs--lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSHS--LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccceEEEecCc--eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 4677777755443211 112223333455566778999999999931 1 48889999999999999
Q ss_pred CCceeEEEEeccCCCcEEEEEEcC---CC-CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec---CCCCEEEEE
Q 000694 1098 KQSAMLVWDVKEHRKAVTSFSLFE---PG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD---TYGKTIFAS 1170 (1349)
Q Consensus 1098 tg~~~~i~tL~gHss~VtsLafSp---dg-~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs---~~g~~Lvsg 1170 (1349)
.+.. +..+..|.++|..++|-+ +. ..|+.-..-.++.+|+..+|+........| ....+|. .+...+...
T Consensus 98 ~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 98 LASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred hhhh--hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEE
Confidence 8765 567788999999999975 33 456666667899999999998765433322 2233333 233444444
Q ss_pred ecCCeEEE
Q 000694 1171 TQGHRMKV 1178 (1349)
Q Consensus 1171 S~DgtIkV 1178 (1349)
+..|.+.+
T Consensus 175 ~s~g~vl~ 182 (1062)
T KOG1912|consen 175 GSKGFVLS 182 (1062)
T ss_pred ccCceEEE
Confidence 44444433
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00012 Score=85.60 Aligned_cols=251 Identities=11% Similarity=0.115 Sum_probs=166.6
Q ss_pred cCCCCEEEEEEc-CCEEEEEECCCcEEEEECCC-CceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCC
Q 000694 1067 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQR 1143 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~t-g~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~-DGtIrVWDl~tg 1143 (1349)
=|.+.|+-+... .+++.+++.||.++.|.-.. .-...+..+..|-+.|.+++.+-+|..+.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 377788877765 56899999999999998654 223445667789999999999999999999888 999999999775
Q ss_pred eEEEE-EEecCCCCeEEecCCCC----EEEEEecCCeEEEEecCCcc--eeec---cCCCeEEEEe-eCC-EEEEEeCCC
Q 000694 1144 KLELI-EVIATKEPIRKLDTYGK----TIFASTQGHRMKVIDSSRTL--KDIY---RSKGIKSMSV-VQG-KIYIGCMDS 1211 (1349)
Q Consensus 1144 ~~~~~-~~~~h~~~V~sLs~~g~----~LvsgS~DgtIkVWDl~~~~--~~~~---~~~~V~~La~-~dg-~LlSGs~DG 1211 (1349)
..... ......+.+..+...|. .-+..-.+|.+.++|-.+.. ...+ +...|.++.+ +-+ ..++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 43311 11222333444443342 22333466789999987433 2222 2334888888 444 455677789
Q ss_pred cEEEEEccC-Cc--cccc----c--ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC----
Q 000694 1212 SIQELAVSN-NV--EREI----K--APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---- 1278 (1349)
Q Consensus 1212 sI~IWDl~t-~~--~~~i----~--~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g---- 1278 (1349)
.|..|.... .+ ...+ . ..+-.+........++.++|++..+...+ +|..|++++.++|++++.+..
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccchh
Confidence 999998863 11 0000 0 00001112245678899999988887766 688999999998877643321
Q ss_pred ----------------------------CCC-CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1279 ----------------------------KGT-TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1279 ----------------------------H~~-~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
|.. .-+.+.|...|++|+-|+-=| |+|.++.+++.++.+.
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 111 234566888899999887666 8999999988877664
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.94 E-value=0.00086 Score=74.48 Aligned_cols=229 Identities=9% Similarity=-0.095 Sum_probs=137.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCCeEEEEEEec-CCCC
Q 000694 1079 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQRKLELIEVIA-TKEP 1156 (1349)
Q Consensus 1079 dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpd-g~~LaSGS~DGtIrVWDl~tg~~~~~~~~~-h~~~ 1156 (1349)
.++||.||.-|...+|...+.+. ..+....|...|+-+.=..+ ...+..++.|.++++.++..+......... -...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 45899999999999999987653 23333444444432221112 234677889999999988765432111111 1111
Q ss_pred eEEecCCCCEEEEEecCCeEEEEecCCcceeecc------CCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccc
Q 000694 1157 IRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR------SKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKA 1228 (1349)
Q Consensus 1157 V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~------~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~ 1228 (1349)
-.++++++...++++....|..|.++........ ..+-.+..| .+..++++..||++.+||++.....-. .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-~ 241 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA-E 241 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh-h
Confidence 1236799999999999999999998743222111 122344455 555677899999999999987632111 1
Q ss_pred cccccccCCCCeEEEEEcCCceEE-EEEecCCCeEEEEECCCCCeEEEec-------CCC-CCeEEEEEecCCCEEEEEe
Q 000694 1229 PFKSWRLQSKPINSLVVYKDWLYS-ASSSVEGSNIKEWRRHRKPQISIAP-------EKG-TTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1229 ~lk~~~~h~~~I~sL~~~pd~i~l-as~S~dDgtIrIWDl~t~~li~tl~-------gH~-~~VtsLafSPDg~~LaSGS 1299 (1349)
....-..|.+.++.+.|++.+..- +-.+-.-+.+.+.|++++.-...+. .|. ..|..-.|+.++.-+.+.+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 111113478889999999765432 2233234689999998865433221 122 3366777777666555554
Q ss_pred CCCcEEEEECC
Q 000694 1300 SASSLQIWLRG 1310 (1349)
Q Consensus 1300 ~DGtVrVWDl~ 1310 (1349)
++. +.=|++.
T Consensus 322 e~~-~ae~ni~ 331 (344)
T KOG4532|consen 322 ELQ-GAEYNIL 331 (344)
T ss_pred chh-hheeecc
Confidence 432 3345443
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.93 E-value=2.1e-05 Score=62.51 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=36.7
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1270 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1270 ~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
++++.++.+|...|++++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.89 E-value=9.2e-05 Score=90.48 Aligned_cols=269 Identities=10% Similarity=0.082 Sum_probs=160.6
Q ss_pred CCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCC--cEEEEEEcCCCC---EEEEEeCCCeEEEEEcc
Q 000694 1069 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK--AVTSFSLFEPGE---SLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss--~VtsLafSpdg~---~LaSGS~DGtIrVWDl~ 1141 (1349)
.+++.++.++ -| -+|.++.-|. .+-|+...-. +.+-+. |.. .|-.+.|+|... .+++.+.. .-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~-ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFT-PPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCC-Cceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhh
Confidence 3466667774 33 3666666664 3556554211 112221 322 466778886552 45555544 45689875
Q ss_pred C--CeEEEEEEecCCCCeEEec---CCCCEEEEEecCCeEEEEecCCcceeecc----CCCeEEEEe--eCCEEEEEeCC
Q 000694 1142 Q--RKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLKDIYR----SKGIKSMSV--VQGKIYIGCMD 1210 (1349)
Q Consensus 1142 t--g~~~~~~~~~h~~~V~sLs---~~g~~LvsgS~DgtIkVWDl~~~~~~~~~----~~~V~~La~--~dg~LlSGs~D 1210 (1349)
. .+.+-....+|...|+.+. .+...+++++.|..+..||++.....+.. ......+.+ .++.+++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 4 2333345668888899866 34567889999999999999853332221 112334444 77888888889
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC--eEEEecCCCCCeEEEEE
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP--QISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~--li~tl~gH~~~VtsLaf 1288 (1349)
+.|.+||++.+... .....+|-..++.+.+..-.....-.+..|++|++||..... ..++.+ ...+|+.-.+
T Consensus 180 ~~i~vwd~r~gs~p-----l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~ 253 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTP-----LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRY 253 (1081)
T ss_pred CceEEEeccCCCcc-----eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccc
Confidence 99999999988432 123344556666666654322112223458899999986532 222222 3446666667
Q ss_pred ecCCC--EEEEEeCCCcEEE---------EECC-CCcEEEEEeCCCC-eEEEEEc------CC------EEEEEECCCcE
Q 000694 1289 VEDFI--YLNYNSSASSLQI---------WLRG-TQQKVGRISAGSK-ITSLLTA------ND------IVLCGTETGLI 1343 (1349)
Q Consensus 1289 SPDg~--~LaSGS~DGtVrV---------WDl~-tg~~l~sl~~hs~-VtsLs~d------g~------~LaSGS~DGtI 1343 (1349)
.|=|. ++.---.+..|.+ |+.. ..++++++.||.. |..+.|- |+ .|++-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 76433 3322222334444 3333 3468899999875 6666551 22 89999999999
Q ss_pred EEee
Q 000694 1344 KGWI 1347 (1349)
Q Consensus 1344 rIWD 1347 (1349)
++|-
T Consensus 334 rlWp 337 (1081)
T KOG0309|consen 334 RLWP 337 (1081)
T ss_pred Eeee
Confidence 9994
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0003 Score=87.57 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=121.2
Q ss_pred CCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 000694 1069 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~ 1148 (1349)
.+.++|+++++..++-|+.+|.|++.+....- .+...|+.. ..+|.+++|||.||+|.|-.+.+++..+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 56889999999999999999999999987631 233345544 66899999999999999999888765433
Q ss_pred EEecCCCCeEEe--cCC-----CCEEEEEecCCeEEEEecC--Cc--ceeecc-CCCeEEEEeeCCEEEEEeCCCcEEEE
Q 000694 1149 EVIATKEPIRKL--DTY-----GKTIFASTQGHRMKVIDSS--RT--LKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1149 ~~~~h~~~V~sL--s~~-----g~~LvsgS~DgtIkVWDl~--~~--~~~~~~-~~~V~~La~~dg~LlSGs~DGsI~IW 1216 (1349)
. ..+.++.++ +|+ ...+++|+.-| +.++.-+ +. ...... ...|.++.|.++.++-++ |-.|++|
T Consensus 109 ~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWan-d~Gv~vy 184 (846)
T KOG2066|consen 109 Y--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWAN-DDGVKVY 184 (846)
T ss_pred E--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEec-CCCcEEE
Confidence 3 334455554 444 56788888888 7666544 21 111222 233888888666655554 4458999
Q ss_pred EccCCccccc-cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 000694 1217 AVSNNVEREI-KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1217 Dl~t~~~~~i-~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~ 1268 (1349)
|+.+++.... ..+....+. ......+.|.++...++++ +.+|++..++
T Consensus 185 d~~~~~~l~~i~~p~~~~R~-e~fpphl~W~~~~~LVIGW---~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRP-ELFPPHLHWQDEDRLVIGW---GDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCc-ccCCCceEecCCCeEEEec---CCeEEEEEEe
Confidence 9988754332 222211111 2233457788887777777 3478888886
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.86 E-value=0.0076 Score=71.37 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=129.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe-c----CCCCe-E-------Eec-CCCCEEEEEecCCeEEEEecC-C
Q 000694 1119 LFEPGESLLSGSADKTIGVWQMVQRKLELIEVI-A----TKEPI-R-------KLD-TYGKTIFASTQGHRMKVIDSS-R 1183 (1349)
Q Consensus 1119 fSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~-~----h~~~V-~-------sLs-~~g~~LvsgS~DgtIkVWDl~-~ 1183 (1349)
.+.||+.++- +..|.|.++|..+.++...... . ...+. . .++ .+|+.++.++.+. ..+.+.. +
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-aFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-AFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-EEEECCCCC
Confidence 4568887663 3457899999988765432222 1 01111 0 123 5788888888754 3444433 3
Q ss_pred cceeeccCCCeEEEEe--eCCEEEEEeCCC-cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 000694 1184 TLKDIYRSKGIKSMSV--VQGKIYIGCMDS-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 1260 (1349)
Q Consensus 1184 ~~~~~~~~~~V~~La~--~dg~LlSGs~DG-sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDg 1260 (1349)
-...+.+..+|.-..+ ....++.|..|| .+-+||..+++...+ ...-..|.++..++++.+++.+. +..
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------e~~lg~I~av~vs~dGK~~vvaN-dr~ 423 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------EKDLGNIEAVKVSPDGKKVVVAN-DRF 423 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-------eCCccceEEEEEcCCCcEEEEEc-Cce
Confidence 3344444444665555 333677788888 999999999975544 44557799999999999887653 456
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcEEEEE
Q 000694 1261 NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS----SLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1261 tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DG----tVrVWDl~tg~~l~sl 1318 (1349)
.+-+.|+.++.+...-+...+-|+.+.|||+++++|-+--+| .|+++|+.+++....-
T Consensus 424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 788889999877665555667899999999999999876664 6899999887765443
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.86 E-value=0.0092 Score=67.21 Aligned_cols=209 Identities=11% Similarity=0.033 Sum_probs=131.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE-ecCCCCEEEEEecCCeEEEEecCC-cceeecc--
Q 000694 1116 SFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-- 1190 (1349)
Q Consensus 1116 sLafSp-dg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s-Ls~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~-- 1190 (1349)
+++|.+ ++.++++--..+.|..|+..++....... ..+... +...++.++.+..++ +.++|... ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 577887 66667777778999999998887543222 223333 332446666665544 45558763 2222221
Q ss_pred -----CCCeEEEEe-eCCEEEEEeCC---------CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1191 -----SKGIKSMSV-VQGKIYIGCMD---------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1191 -----~~~V~~La~-~dg~LlSGs~D---------GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
....+.+.+ ++|.++.+... |.|..++.. ++.... ...-...+.++++|++..+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-------~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-------ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-------EEEESSEEEEEEETTSSEEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-------ecCcccccceEECCcchheeec
Confidence 122777888 88888875432 557777776 432211 1123456889999998766555
Q ss_pred ecCCCeEEEEECCC-CC-e-----EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEE
Q 000694 1256 SVEGSNIKEWRRHR-KP-Q-----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSL 1327 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t-~~-l-----i~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h-s~VtsL 1327 (1349)
....+.|..|++.. +. . ...+....+..-.+++..+|++.++....+.|.+++.. |+.+..+... ..++++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 55677899999853 22 1 12222222347889999999998888889999999987 8999888865 569999
Q ss_pred EEc---CCEEEEE
Q 000694 1328 LTA---NDIVLCG 1337 (1349)
Q Consensus 1328 s~d---g~~LaSG 1337 (1349)
+|. .+.|+..
T Consensus 231 ~fgg~~~~~L~vT 243 (246)
T PF08450_consen 231 AFGGPDGKTLYVT 243 (246)
T ss_dssp EEESTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 994 3444443
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.86 E-value=0.00014 Score=84.46 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCC
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG 1193 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~ 1193 (1349)
+..+..++++++++.+..+....+++......... -..+.++......+.....+..+.+.|-
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-----l~~~~~v~~~~~ai~~~~~~~sv~v~dk------------ 127 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-----LLDVSCVPKRPTAISFIREDTSVLVADK------------ 127 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcce-----eeeEeecccCcceeeeeeccceEEEEee------------
Confidence 34455667777777777777766666644321000 0011222222233333333333333222
Q ss_pred eEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 000694 1194 IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 1273 (1349)
Q Consensus 1194 V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li 1273 (1349)
.+....+.+|....+.. ....+|-..+..++++||..++++.. .|..|++-.....-.+
T Consensus 128 -------------agD~~~~di~s~~~~~~-------~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 128 -------------AGDVYSFDILSADSGRC-------EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI 186 (390)
T ss_pred -------------cCCceeeeeecccccCc-------chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch
Confidence 23444555555543322 23357788899999999999988764 4568888777654455
Q ss_pred EEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1274 SIA-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1274 ~tl-~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
..+ -||...|..++..++ ..|++||.|++|++||+.+|+.+.++.
T Consensus 187 esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 444 479999999998765 458999999999999999999887664
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.83 E-value=0.00012 Score=85.02 Aligned_cols=93 Identities=8% Similarity=0.062 Sum_probs=73.3
Q ss_pred EecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCC-eEEEEE-cC
Q 000694 1255 SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSK-ITSLLT-AN 1331 (1349)
Q Consensus 1255 ~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~-~hs~-VtsLs~-dg 1331 (1349)
...+...+.+|....+.+ ...-||-.-+++++|+||+++|+++..|+.|+|-....-..+..+- ||.. |..++. ++
T Consensus 127 kagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 333555677777665433 3445799999999999999999999999999998777666666655 4655 888886 57
Q ss_pred CEEEEEECCCcEEEeeC
Q 000694 1332 DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1332 ~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|++||.|+++++||.
T Consensus 206 ~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred ceeeecCCCCcEEEEec
Confidence 78899999999999985
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.82 E-value=0.0039 Score=70.42 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=121.2
Q ss_pred cCCEEEEEECCCcEEEEECCCCceeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC-
Q 000694 1078 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT- 1153 (1349)
Q Consensus 1078 sdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~---gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h- 1153 (1349)
++|.+++.-.|..|.|=..++.-...+...+ .....=.-++|+||+..|+.+...|+|+++|+....+. .....+
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~ 85 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMS 85 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccc
Confidence 4666666677777776665543221222222 22223567999999999999999999999999654332 222211
Q ss_pred -----CCCeEEec---CC-----CCEEEEEecCCeEEEEecC-Ccceee-------c---cCCCeEEEEe-eC-CEEEE-
Q 000694 1154 -----KEPIRKLD---TY-----GKTIFASTQGHRMKVIDSS-RTLKDI-------Y---RSKGIKSMSV-VQ-GKIYI- 1206 (1349)
Q Consensus 1154 -----~~~V~sLs---~~-----g~~LvsgS~DgtIkVWDl~-~~~~~~-------~---~~~~V~~La~-~d-g~LlS- 1206 (1349)
...|..+. .. ...+++...+|.++-|-+. +..+.. + ..++|.++.+ ++ ..++.
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG 165 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence 12333321 11 3356777778777766653 111111 1 1235888888 44 33444
Q ss_pred EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEc---CCceEEEEEecCCC------eEEEEECCCCCeEEEec
Q 000694 1207 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY---KDWLYSASSSVEGS------NIKEWRRHRKPQISIAP 1277 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~---pd~i~las~S~dDg------tIrIWDl~t~~li~tl~ 1277 (1349)
|+....-..+ ......+++..+- |....+.+ .+++ +-.+|.+-+.+......
T Consensus 166 G~~~~~~~~s-----------------~a~~~GLtaWRiL~~~Pyyk~v~~--~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 166 GCEQNQDGMS-----------------KASSCGLTAWRILSDSPYYKQVTS--SEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred ccCCCCCccc-----------------cccccCceEEEEcCCCCcEEEccc--cCccccccccccceeeccceeeeeccc
Confidence 4433311000 0111122222221 22111111 1111 22344433322222223
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1278 EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1278 gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
.....|..|..||||..||+...+|.|.+|++.+....+...
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 346789999999999999999999999999999887776665
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=4.9e-05 Score=86.50 Aligned_cols=160 Identities=10% Similarity=0.089 Sum_probs=112.7
Q ss_pred EEEecCCeEEEEecCCcceeecc-CCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEE
Q 000694 1168 FASTQGHRMKVIDSSRTLKDIYR-SKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV 1244 (1349)
Q Consensus 1168 vsgS~DgtIkVWDl~~~~~~~~~-~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~ 1244 (1349)
++++.+..+-+-|+.+.....+. ...|.++.| .++.++.||.+|.|..+|++.......... .--.|+..|++++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a--~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA--QRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce--EEEEcCcchhhhh
Confidence 55666677778888755444443 334777777 467777899999999999987632211111 1123677888887
Q ss_pred EcC-CceEEEEEecCCCeEEEEECCCCCe---EEEecCCCCCeE--EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 000694 1245 VYK-DWLYSASSSVEGSNIKEWRRHRKPQ---ISIAPEKGTTIQ--AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1245 ~~p-d~i~las~S~dDgtIrIWDl~t~~l---i~tl~gH~~~Vt--sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl 1318 (1349)
.-. +..++.+.+ -+|+|++||.+--++ +.++.||...-. -+-+.+....++++|.|...|||.+++|+.+.++
T Consensus 306 ~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASD-MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeecc-CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 766 556666544 477999999876555 889999865322 2334577788999999999999999999999998
Q ss_pred eCCC-----CeEEEEEc
Q 000694 1319 SAGS-----KITSLLTA 1330 (1349)
Q Consensus 1319 ~~hs-----~VtsLs~d 1330 (1349)
+... .+.+++++
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 8532 25777775
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.82 E-value=0.0041 Score=80.79 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=133.2
Q ss_pred CCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
.+.|.++.|. +..++.+..+|.|.+-|..+.....+.. -.++|.+++|+||++.++-.+.++++.+-+- +-..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 3789999994 4469999999999999998876544433 3578999999999999998888888766432 11111
Q ss_pred EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecC-C---------cc---eeeccCCCeEEEEe-eCCEEEEE-----
Q 000694 1147 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-R---------TL---KDIYRSKGIKSMSV-VQGKIYIG----- 1207 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~---------~~---~~~~~~~~V~~La~-~dg~LlSG----- 1207 (1349)
... +..+=....+..+.++++..=.-+... + .. .......+-..+.| .||.+++.
T Consensus 144 ~E~------~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 144 AEK------PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred hcc------ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 000 000000011223333333311111111 0 00 00011122345777 67755543
Q ss_pred eCC-CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCC---CCeEEEecCCCC
Q 000694 1208 CMD-SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHR---KPQISIAPEKGT 1281 (1349)
Q Consensus 1208 s~D-GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S--~dDgtIrIWDl~t---~~li~tl~gH~~ 1281 (1349)
..+ ..|++||-. +....+.. .....-.++.|-|.+..+++.. ++++.|.+|..+. |...-.+.....
T Consensus 218 ~~~~RkirV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred cCCceeEEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 234 899999987 43222111 1122235678888777666533 3456799998654 322333333344
Q ss_pred CeEEEEEecCCCEEEE---EeCCCcEEEEECCCCc
Q 000694 1282 TIQAMAVVEDFIYLNY---NSSASSLQIWLRGTQQ 1313 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaS---GS~DGtVrVWDl~tg~ 1313 (1349)
.|..++|+.++..|+. ......|++|-..+..
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 5899999999999988 5555669999877654
No 293
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0027 Score=77.83 Aligned_cols=211 Identities=8% Similarity=-0.089 Sum_probs=114.3
Q ss_pred CeEEEEEccCCeEEEEEEecCCCCeE--EecCCCCE--EE-EEecCC--eEEEEecCCcce-eeccCC-CeEEEEe-eCC
Q 000694 1133 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKT--IF-ASTQGH--RMKVIDSSRTLK-DIYRSK-GIKSMSV-VQG 1202 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~~h~~~V~--sLs~~g~~--Lv-sgS~Dg--tIkVWDl~~~~~-~~~~~~-~V~~La~-~dg 1202 (1349)
+.|.+.|.+.+.... +......+. .|+++|.. ++ +...+| .|.+.++.+... .+.... ......| |||
T Consensus 165 ~~l~~~d~dG~~~~~--lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRP--LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceE--cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 366777776655432 222233333 48899875 32 333333 577778874322 222212 2344566 888
Q ss_pred E-EEEEe-C----CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE--ECCC-CCeE
Q 000694 1203 K-IYIGC-M----DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW--RRHR-KPQI 1273 (1349)
Q Consensus 1203 ~-LlSGs-~----DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIW--Dl~t-~~li 1273 (1349)
+ ++..+ . |..+..||+..+..... .+.............++|++..++..+..+|...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~---~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKP---RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcc---eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 4 44332 2 22344467665321111 011112222335678999988776555445544444 5432 2334
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEE-C--CCcEEE
Q 000694 1274 SIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGT-E--TGLIKG 1345 (1349)
Q Consensus 1274 ~tl~gH~~~VtsLafSPDg~~LaSGS~D---GtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg~~LaSGS-~--DGtIrI 1345 (1349)
..+..+...+....|+|||+.|+..+.+ ..|.+||+.+++......+...+....| ||+.|+..+ . .+.|++
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 4455555667789999999998876543 4689999998876543333334555566 577666433 3 245666
Q ss_pred eeC
Q 000694 1346 WIP 1348 (1349)
Q Consensus 1346 WD~ 1348 (1349)
||.
T Consensus 400 vdl 402 (428)
T PRK01029 400 ISL 402 (428)
T ss_pred EEC
Confidence 663
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=0.0033 Score=84.92 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=119.9
Q ss_pred CEEEEEEc--CCEEEE-EECCCcEEEEECCCCceeEEEEeccC-----------------CCcEEEEEEcC-CCCEEEEE
Q 000694 1071 AVTALIYY--KGLLCS-GFSDGSIKMWDIKKQSAMLVWDVKEH-----------------RKAVTSFSLFE-PGESLLSG 1129 (1349)
Q Consensus 1071 ~Vt~Lafs--dg~LaS-GS~DGtIrVWDl~tg~~~~i~tL~gH-----------------ss~VtsLafSp-dg~~LaSG 1129 (1349)
.-..|+++ ++.|++ -..++.|+++|..++.. .++.+- -..-.+++|+| ++..+++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 35678885 345444 44567899999987653 333210 01236799999 55666777
Q ss_pred eCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-eCCE-EE-E
Q 000694 1130 SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQGK-IY-I 1206 (1349)
Q Consensus 1130 S~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~dg~-Ll-S 1206 (1349)
+.++.|++||..++.... ..+ ++.... .++. ............+++ +++. ++ +
T Consensus 702 ~~~~~I~v~d~~~g~v~~--~~G----------~G~~~~---~~g~---------~~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRV--FSG----------DGYERN---LNGS---------SGTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCCeEEEEECCCCeEEE--Eec----------CCcccc---CCCC---------ccccccccCccEEEEeCCCCEEEEE
Confidence 888999999997775421 111 000000 0000 000000011334444 4432 33 3
Q ss_pred EeCCCcEEEEEccCCccccccc-------cc-ccc-------ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 000694 1207 GCMDSSIQELAVSNNVEREIKA-------PF-KSW-------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 1271 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i~~-------~l-k~~-------~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~ 1271 (1349)
-+.++.|++||+.++....+.. .. ... .........+++.+++...++. ..++.|++||..++.
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD-s~N~rIrviD~~tg~ 836 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD-SYNHKIKKLDPATKR 836 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE-CCCCEEEEEECCCCe
Confidence 3445666666665442110000 00 000 0011123567788876544443 357799999998776
Q ss_pred eEEEec-------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE
Q 000694 1272 QISIAP-------------EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK 1314 (1349)
Q Consensus 1272 li~tl~-------------gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~ 1314 (1349)
+..... +.-....+++++++|+.+++-+.++.|++||+.+++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 553321 1122577899999999999999999999999988765
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.011 Score=72.46 Aligned_cols=188 Identities=12% Similarity=-0.009 Sum_probs=110.2
Q ss_pred cEEEEEEcCCCCE-EEEEeC---CCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEe-cC--CeEEEEecCCcc
Q 000694 1113 AVTSFSLFEPGES-LLSGSA---DKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QG--HRMKVIDSSRTL 1185 (1349)
Q Consensus 1113 ~VtsLafSpdg~~-LaSGS~---DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS-~D--gtIkVWDl~~~~ 1185 (1349)
.+..-.|+|||+. ++..+. +..|.++|+.+|+...............++++|..++... .+ ..|.++|+.+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999985 554333 3568889998887644332221122345889998776543 33 468888876433
Q ss_pred -eeeccCCC-eEEEEe-eCCE-EEEEe-CCC--cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC
Q 000694 1186 -KDIYRSKG-IKSMSV-VQGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 1258 (1349)
Q Consensus 1186 -~~~~~~~~-V~~La~-~dg~-LlSGs-~DG--sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d 1258 (1349)
..+..... .....| |||. ++..+ ..| .|+++|+.++....+ .+.+. . ...++|++..++-....
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~g~--~--~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFHGK--N--NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccCCC--c--CceECCCCCEEEEEEcC
Confidence 33322222 233456 7774 44333 223 688888887754333 11111 1 23789998877655433
Q ss_pred C--------CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEECCC
Q 000694 1259 G--------SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-SS--LQIWLRGT 1311 (1349)
Q Consensus 1259 D--------gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D-Gt--VrVWDl~t 1311 (1349)
+ ..|.+.|+.++.. ..+.... ......|+|||+.++..+.+ +. +.+.++..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2 3688889888765 3444332 23358899999987765533 33 44445543
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=2.4e-05 Score=96.62 Aligned_cols=201 Identities=12% Similarity=0.008 Sum_probs=134.4
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCC--eEEE
Q 000694 1103 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGH--RMKV 1178 (1349)
Q Consensus 1103 ~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~Dg--tIkV 1178 (1349)
.+++|..|+...+|++|+-+.++|+.|+..|.|+++++.+|... ....+|+.+|+.+. .+|...++.+.-. -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-ccccccccccccccccCCcceeeeeccccCchHHH
Confidence 46678889999999999999999999999999999999999765 45678999999886 4566666554433 4678
Q ss_pred EecCCcceeeccCCCeEEEEeeCCE--EEEEeCCCcEEEEEccCCccc-cccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1179 IDSSRTLKDIYRSKGIKSMSVVQGK--IYIGCMDSSIQELAVSNNVER-EIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1179 WDl~~~~~~~~~~~~V~~La~~dg~--LlSGs~DGsI~IWDl~t~~~~-~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
|+.............-.++.|.+.. -+.|+......+||+.++... +...+. .+....-+...|+|....++.
T Consensus 1172 W~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred hccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc---hhhhhhccccccCCCcceEee-
Confidence 9987433322222334566663321 223555577889999988422 111110 011112245566776655553
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1256 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
|| .+||++..+.++.|......+ .-.|+|.|..++..+ .|||+++.+.++...
T Consensus 1248 ---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 33 589998877777766444333 335899999988865 589999887765544
No 297
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.71 E-value=0.0007 Score=93.74 Aligned_cols=302 Identities=13% Similarity=0.118 Sum_probs=195.8
Q ss_pred HHHHHhhhcCCcCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhc--
Q 000694 554 VTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-- 631 (1349)
Q Consensus 554 i~~~~~~~~~~~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~-- 631 (1349)
+..+|..+.++.+....+..--.|.-|++.|..+ +.++++.++..|.-+...++.+++.|.+.| -+..|++||+.+
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~LL~s~~~ 502 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQLLETGSQ 502 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHcCCCH
Confidence 4455555655555555555555678888888876 579999999999999988988999888886 899999999876
Q ss_pred --chhhhhhhhhcCCChhh---hh-hhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccc--------
Q 000694 632 --VPEAAILIYLIKPSPTE---IK-TLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYA-------- 697 (1349)
Q Consensus 632 --~~~aavl~yll~p~~~q---~~-~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~-------- 697 (1349)
-.+|+..|+=+.=-..| ++ ...-+|.|+++|++++...+ ..|...|-.|+.+.|..
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q----------~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ----------EIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH----------HHHHHHHHHHHhccchhHHHHHHHH
Confidence 67777777766533333 33 56899999999997542111 22222222232211110
Q ss_pred -----cch-hh-Hhhcc-----------------hhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcC
Q 000694 698 -----TNN-MH-LAAIN-----------------SPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTA 753 (1349)
Q Consensus 698 -----~~~-~~-~~a~~-----------------~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~ 753 (1349)
.+. .+ +.++| ..++|+.|.+.++.|+.+.|..|+.+|.....-....+..+...=-
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 011 11 21111 2356778999999999999999999998666555454455666677
Q ss_pred cchhhHhhhcccchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccC
Q 000694 754 VAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN 833 (1349)
Q Consensus 754 ~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~e 833 (1349)
..|+++||.+++...+..|-.-|.-|..-.+. .+.... -+.|++-. |+-.|.....+-.-.++.-|- -++.+
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~-v~~GaV~p---L~~LL~~~d~~v~e~Al~ALa--nLl~~ 724 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSY-AAEDAIKP---LIKLAKSSSIEVAEQAVCALA--NLLSD 724 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHH-HHcCCHHH---HHHHHhCCChHHHHHHHHHHH--HHHcC
Confidence 99999999998887777776666666653332 222222 34666655 444444433332222222221 22345
Q ss_pred CCC-CCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCcccc
Q 000694 834 TTG-KSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 876 (1349)
Q Consensus 834 p~~-~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l~g~fs 876 (1349)
|.. ..+-.+.+|..|++-|++. .++++..|+.||..|.=+|+
T Consensus 725 ~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 725 PEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred chHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 543 3344588899999999877 56889999999999977776
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0039 Score=75.06 Aligned_cols=256 Identities=11% Similarity=0.086 Sum_probs=142.5
Q ss_pred EEEEEc-CC-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-----------CCeEEEEE
Q 000694 1073 TALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-----------DKTIGVWQ 1139 (1349)
Q Consensus 1073 t~Lafs-dg-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~-----------DGtIrVWD 1139 (1349)
+-+.|+ .| +|+|-..-| |.+|--.+-.. ++.|. |. .|.-+.|||..+||+|-|. ...++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR--IQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH--HHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 467775 34 688877776 56897766332 45554 65 5899999999999998653 25799999
Q ss_pred ccCCeEEEEEEec-CCC---CeEEecCCCCEEEEEecCCeEEEEecCCcc---eeeccCCCeEEEEe-------------
Q 000694 1140 MVQRKLELIEVIA-TKE---PIRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDIYRSKGIKSMSV------------- 1199 (1349)
Q Consensus 1140 l~tg~~~~~~~~~-h~~---~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~---~~~~~~~~V~~La~------------- 1199 (1349)
+.+|.....+... ... ++..++.++++++.... .+|.||+...-. .....-.+|..+.+
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9999876544331 111 34456777877776555 567777654100 00000011111111
Q ss_pred -------------eC----------------------CEEEEEeC-----------CCcEEEEEccCCcccccccccccc
Q 000694 1200 -------------VQ----------------------GKIYIGCM-----------DSSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1200 -------------~d----------------------g~LlSGs~-----------DGsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
|. |..++.-- =.++.|+.++... .++...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----Ipve~v 442 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----IPVEVV 442 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----CCceee
Confidence 11 11111000 0011111111110 010110
Q ss_pred ccCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCC----CCeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHR----KPQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSL 1304 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~--dDgtIrIWDl~t----~~li~tl~gH~~~VtsLafSPDg~~LaSGS---~DGtV 1304 (1349)
. -...|..++|-|.+...+..+. ...++.+|.+++ -.++..+. ....+.+.|+|.|++++.+. ..|.+
T Consensus 443 e-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 443 E-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred e-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccce
Confidence 1 1345666777777654433332 235788888763 12333333 24567899999999998765 57889
Q ss_pred EEEECCCCcEEEEE-eCCCCeEEEEEc--CCEEEEEECCCc
Q 000694 1305 QIWLRGTQQKVGRI-SAGSKITSLLTA--NDIVLCGTETGL 1342 (1349)
Q Consensus 1305 rVWDl~tg~~l~sl-~~hs~VtsLs~d--g~~LaSGS~DGt 1342 (1349)
..+|+.-......- ..|...+.+.|| |+++++++.-+.
T Consensus 520 ~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 520 EFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred EEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 99998743222221 225556777886 889999887543
No 299
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.68 E-value=0.00042 Score=79.02 Aligned_cols=204 Identities=13% Similarity=0.182 Sum_probs=123.5
Q ss_pred CCCEEEEEEc-CC---EEEEEECCCcEEEEECCCCceeE---------------------------------EEEe-ccC
Q 000694 1069 SGAVTALIYY-KG---LLCSGFSDGSIKMWDIKKQSAML---------------------------------VWDV-KEH 1110 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg---~LaSGS~DGtIrVWDl~tg~~~~---------------------------------i~tL-~gH 1110 (1349)
...|..+.|. ++ .+...+.|.+|++|.+....... .+.+ .+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 3578888983 22 57888899999999885322111 1111 368
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE--EEEEecCC-----CCeEE--ecC-CCCEEEEEecCCeEEEEe
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE--LIEVIATK-----EPIRK--LDT-YGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~--~~~~~~h~-----~~V~s--Ls~-~g~~LvsgS~DgtIkVWD 1180 (1349)
+--|+++.++.|+..++++. |=.|.+|++.--... .....+++ ..|++ |+| +.+.++.
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y----------- 231 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY----------- 231 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-----------
Confidence 88899999999999888765 778999998532111 01111111 11221 221 1233333
Q ss_pred cCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcc-----ccc----cccc-cccccCCCCeEEEEEcCCce
Q 000694 1181 SSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE-----REI----KAPF-KSWRLQSKPINSLVVYKDWL 1250 (1349)
Q Consensus 1181 l~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~-----~~i----~~~l-k~~~~h~~~I~sL~~~pd~i 1250 (1349)
.+..|+|++.|++.... ... .+.. ..+..--..|..+.|+++|.
T Consensus 232 --------------------------SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr 285 (433)
T KOG1354|consen 232 --------------------------SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR 285 (433)
T ss_pred --------------------------ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc
Confidence 44445555555542210 000 0000 01111234577889999999
Q ss_pred EEEEEecCCCeEEEEEC-CCCCeEEEecCCCC---------------CeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1251 YSASSSVEGSNIKEWRR-HRKPQISIAPEKGT---------------TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1251 ~las~S~dDgtIrIWDl-~t~~li~tl~gH~~---------------~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
++++- +=-+|++||+ ...+++.+++-|.. .-..++|+.++.+++|||....+++++...|
T Consensus 286 yilsR--Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 286 YILSR--DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEEEe--ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 99875 2358999999 44667777766643 2245789999999999999999999985444
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.01 Score=74.90 Aligned_cols=216 Identities=11% Similarity=0.137 Sum_probs=127.8
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCe-----EEEEEccCCe
Q 000694 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-VTSFSLFEPGESLLSGSADKT-----IGVWQMVQRK 1144 (1349)
Q Consensus 1071 ~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~-VtsLafSpdg~~LaSGS~DGt-----IrVWDl~tg~ 1144 (1349)
.|+|+.-+.|.++.|+.||.|.+.+-.- ..++.++.+... |+.+....+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 7777777788999999999988777543 345778888877 555554444468888777654 8999986421
Q ss_pred EEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCc
Q 000694 1145 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNV 1222 (1349)
Q Consensus 1145 ~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~ 1222 (1349)
. ...+ .++ +..+++-.. .......+.++++ ....+++|-.||.|..+.=.-.+
T Consensus 104 ~-------n~sP-~c~-------------~~~ri~~~~----np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 104 K-------NNSP-QCL-------------YEHRIFTIK----NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred C-------CCCc-cee-------------eeeeeeccC----CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 0 0000 000 000111100 0001122344444 33445667777777766321111
Q ss_pred cccccccccccccCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000694 1223 EREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1223 ~~~i~~~lk~~~~h~~~I~sL~~~pd~i~-las~S~dDgtIrIWDl~t~~-li~tl~gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
.+.. ........+.+|+.+.+..++.. +.+.. -..|.+|.+.+.. ....+..|+..+.|..+++....+++++
T Consensus 159 Drgs--r~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~- 233 (933)
T KOG2114|consen 159 DRGS--RQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG- 233 (933)
T ss_pred cccc--ceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-
Confidence 1100 11112234689999998877654 22221 3469999987544 3555788888999999987666455544
Q ss_pred CCcEEEEECCCCcEEEEEe
Q 000694 1301 ASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1301 DGtVrVWDl~tg~~l~sl~ 1319 (1349)
+..+.+|+....++-..+.
T Consensus 234 ~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 234 SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceEEEEcCCCcceeeeec
Confidence 4569999988777777777
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.65 E-value=0.047 Score=65.02 Aligned_cols=302 Identities=11% Similarity=0.020 Sum_probs=159.2
Q ss_pred eeecccccccccccccCCCceEEEEEeeee---eecccCCCCEEEEEEcCCEEEEEECCCc------------EEEEECC
Q 000694 1033 VTWMAEELHKAADYYLPNISRISCVHTQIL---EASHKCSGAVTALIYYKGLLCSGFSDGS------------IKMWDIK 1097 (1349)
Q Consensus 1033 vsw~a~ellkv~~~~~p~~~~w~~~~t~tl---~~~~gH~~~Vt~Lafsdg~LaSGS~DGt------------IrVWDl~ 1097 (1349)
..|.+++-+.+...+..+=++|.+...... ....-.-++.+.+.+-+|.++.|-.--. =++|--.
T Consensus 133 aG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~ 212 (668)
T COG4946 133 AGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS 212 (668)
T ss_pred eccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEe
Confidence 456666644443333333355665544221 1111234667777777776555433211 2345332
Q ss_pred C-C-ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CCeEEEEEEecCCCCeEEecCCCCEEEEEecCC
Q 000694 1098 K-Q-SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV-QRKLELIEVIATKEPIRKLDTYGKTIFASTQGH 1174 (1349)
Q Consensus 1098 t-g-~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~-tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~Dg 1174 (1349)
. | ....+..+.+|-+ +-.+- .++.-+....||.=.+|.++ .|+-+.....-+.-.......+|..++.. ..|
T Consensus 213 d~g~tFeK~vdl~~~vS---~PmIV-~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~G 287 (668)
T COG4946 213 DGGKTFEKFVDLDGNVS---SPMIV-GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NAG 287 (668)
T ss_pred cCCcceeeeeecCCCcC---CceEE-cceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cCC
Confidence 2 2 2333344455532 21111 11222223334443444332 12211111111122233455778877764 568
Q ss_pred eEEEEecCCcceeec-cC------C----------CeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCC
Q 000694 1175 RMKVIDSSRTLKDIY-RS------K----------GIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS 1237 (1349)
Q Consensus 1175 tIkVWDl~~~~~~~~-~~------~----------~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~ 1237 (1349)
.|.+||......... -+ . .....+..+|..++--.-|...+.+...+-..++ ++.
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv--------~~~ 359 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV--------GKK 359 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc--------CCC
Confidence 899999874221110 00 0 0222333455555444456666666665533222 333
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000694 1238 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR 1317 (1349)
Q Consensus 1238 ~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~s 1317 (1349)
..|.-..+..+..-.+.+..++..+-++|..+++... +...-+.|.++..+|+|++++.+.....+.+.|+.+|.....
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 4465555554443334344445589999999886544 444667899999999999999998888888889999876533
Q ss_pred EeC-CCCeEEEEEc--CCEEEEEECCC----cEEEeeC
Q 000694 1318 ISA-GSKITSLLTA--NDIVLCGTETG----LIKGWIP 1348 (1349)
Q Consensus 1318 l~~-hs~VtsLs~d--g~~LaSGS~DG----tIrIWD~ 1348 (1349)
=+. .+-|+.+.|+ ++++|-+--+| .|+++|.
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence 332 3348999986 56888776665 5677764
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.63 E-value=0.013 Score=77.93 Aligned_cols=268 Identities=14% Similarity=0.080 Sum_probs=154.7
Q ss_pred CEEEEEEc---CC-EEEEEECCC--cEEEEECCCCc-eeEEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1071 AVTALIYY---KG-LLCSGFSDG--SIKMWDIKKQS-AMLVWDVK-----EHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1071 ~Vt~Lafs---dg-~LaSGS~DG--tIrVWDl~tg~-~~~i~tL~-----gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
.+...+|+ +. +++++.... .|.+....... ...+..+. ...+.|.++.|-++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 45666663 22 344444443 34444333221 22344443 235789999999999999999999999999
Q ss_pred ----EccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCc
Q 000694 1139 ----QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSS 1212 (1349)
Q Consensus 1139 ----Dl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGs 1212 (1349)
|..+.... ....-...|.+ |+|++..++.++.++++.+.+-+-.+..... +..-.+..++.++.|+...
T Consensus 103 ~~~~~~~~~~~E--~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~---l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDEIE--IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVP---LDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCceeE--EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEee---cCccccCCCceeeeccCcc
Confidence 66555543 34445566766 7799999999999998887654321111100 0001111223444333222
Q ss_pred EEEEEccCCcc-----cccccc---ccccccCCCCeEEEEEcCCceEEEEEec---CC--CeEEEEECCCCCeEEEecCC
Q 000694 1213 IQELAVSNNVE-----REIKAP---FKSWRLQSKPINSLVVYKDWLYSASSSV---EG--SNIKEWRRHRKPQISIAPEK 1279 (1349)
Q Consensus 1213 I~IWDl~t~~~-----~~i~~~---lk~~~~h~~~I~sL~~~pd~i~las~S~---dD--gtIrIWDl~t~~li~tl~gH 1279 (1349)
=.-|.=..++. .....+ ..... ....-..|.|-.|+.|.+..+. .+ +.+++|+-+ |.+..+-..-
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 11111111110 000000 01112 3345577899999988877664 23 589999976 5555444433
Q ss_pred CCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEeC-----CCCeEEEEEc--CCEEEEEECCCcEEEee
Q 000694 1280 GTTIQAMAVVEDFIYLNYNSS---ASSLQIWLRGTQQKVGRISA-----GSKITSLLTA--NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1280 ~~~VtsLafSPDg~~LaSGS~---DGtVrVWDl~tg~~l~sl~~-----hs~VtsLs~d--g~~LaSGS~DGtIrIWD 1347 (1349)
.+--.+++|.|.|.+||+.-. ...|.+|.. +|-....+.- ...|..+.|+ +..||....|. |.+|-
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 344457899999999998764 345666664 3444333332 3358999996 67888887666 99995
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.62 E-value=0.0011 Score=83.32 Aligned_cols=188 Identities=12% Similarity=0.136 Sum_probs=128.7
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL 1160 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL 1160 (1349)
.++-|+--..+..+|+++.+. .+...-..+.|+-|.. +++++.+|...|+|.+-|.++-+.+ ..+..|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e--~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i-ht~~aHs~siSDf 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKE--TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI-HTFDAHSGSISDF 223 (1118)
T ss_pred ceeecchhhheeeeeccccee--eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee-eeeeccccceeee
Confidence 577777777888899998764 3333222334666664 7889999999999999999887765 4567899999999
Q ss_pred cCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCe
Q 000694 1161 DTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPI 1240 (1349)
Q Consensus 1161 s~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I 1240 (1349)
+..|+.+++++..+...-. ..|..|++||++..+... |+. .+.. .
T Consensus 224 Dv~GNlLitCG~S~R~~~l----------------------------~~D~FvkVYDLRmmral~---PI~---~~~~-P 268 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNL----------------------------AMDPFVKVYDLRMMRALS---PIQ---FPYG-P 268 (1118)
T ss_pred eccCCeEEEeecccccccc----------------------------cccchhhhhhhhhhhccC---Ccc---cccC-c
Confidence 9999999999875432111 237889999998764221 111 1111 1
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCC-C-C--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1241 NSLVVYKDWLYSASSSVEGSNIKEWRRHR-K-P--QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dDgtIrIWDl~t-~-~--li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
.-+.++|.....++..+..|...+-|..+ + . -+..+...+..+.+++++++|+.++.|..+|.|.+|.
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44567776432222222356788888432 1 1 1233334456699999999999999999999999995
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.62 E-value=0.0044 Score=69.11 Aligned_cols=222 Identities=9% Similarity=-0.035 Sum_probs=136.4
Q ss_pred CCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--
Q 000694 1087 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK-- 1159 (1349)
Q Consensus 1087 ~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSp-----dg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s-- 1159 (1349)
....+-+|+.-+.....+... +.+.|.| .-.+|+.||.-|...+|...+.+........+...|.-
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 344567888766431112222 3445544 33579999999999999998766543333334443332
Q ss_pred -ecCCCCEEEEEecCCeEEEEecCCcceeec-cCC--CeEEEEe-eCCEEEE-EeCCCcEEEEEccCCcccccccccccc
Q 000694 1160 -LDTYGKTIFASTQGHRMKVIDSSRTLKDIY-RSK--GIKSMSV-VQGKIYI-GCMDSSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1160 -Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~-~~~--~V~~La~-~dg~LlS-Gs~DGsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
.......+..++.|.++++.++++...... +.. .+.++.+ +++.+.+ .+....|-.|.+......-.. ...
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--~~~- 199 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--IYE- 199 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee--eEe-
Confidence 334455678889999999999985443332 222 2677777 7777664 677788888888765322111 000
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeE----EEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEE
Q 000694 1234 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQI----SIAPEKGTTIQAMAVVEDFI--YLNYNSSASSLQI 1306 (1349)
Q Consensus 1234 ~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~li----~tl~gH~~~VtsLafSPDg~--~LaSGS~DGtVrV 1306 (1349)
......-.+..|+......+.+. .||++.|||++.. .+. .+-..|.+.++.+.|++.|. +|...-.-+.+.|
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 11112223445565544444433 6889999999763 222 33346889999999998653 3444445678999
Q ss_pred EECCCCcEEEEEe
Q 000694 1307 WLRGTQQKVGRIS 1319 (1349)
Q Consensus 1307 WDl~tg~~l~sl~ 1319 (1349)
-|++++.....+.
T Consensus 279 ~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 279 VDTRNYVNHQVIV 291 (344)
T ss_pred EEcccCceeeEEe
Confidence 9999988766654
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.57 E-value=0.00067 Score=75.11 Aligned_cols=192 Identities=10% Similarity=0.035 Sum_probs=111.1
Q ss_pred EEEEEEcCC-EEEEEECCCcEEEEECCCCce----------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000694 1072 VTALIYYKG-LLCSGFSDGSIKMWDIKKQSA----------MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1072 Vt~Lafsdg-~LaSGS~DGtIrVWDl~tg~~----------~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl 1140 (1349)
|+.+.+... .|++|..++.+.......+.+ ...+.+..|+++-.+-+.+-.++.+++|+.||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 556666544 588888887776665543322 123334444443333333345667999999999999987
Q ss_pred cCCeEEEE-EEecCCC-CeEEecCCCCEEEEEec-----CCeEEEEecCCccee---eccCCCeEEEEe---eCCEEEEE
Q 000694 1141 VQRKLELI-EVIATKE-PIRKLDTYGKTIFASTQ-----GHRMKVIDSSRTLKD---IYRSKGIKSMSV---VQGKIYIG 1207 (1349)
Q Consensus 1141 ~tg~~~~~-~~~~h~~-~V~sLs~~g~~LvsgS~-----DgtIkVWDl~~~~~~---~~~~~~V~~La~---~dg~LlSG 1207 (1349)
+.-..... ....|.+ .-.++...++.+.++.. -+..+.|+++..... ......|.+++. ++..+++|
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEe
Confidence 65111100 0000111 11112233444443322 234566776632211 122233777766 33456679
Q ss_pred eCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCC
Q 000694 1208 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1208 s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~-i~las~S~dDgtIrIWDl~t 1269 (1349)
+.||.+.+||.+... .+...+..|..+|..+.|||.. ..++++ .+||.+--||..+
T Consensus 199 t~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~-sedGslw~wdas~ 255 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTC-SEDGSLWHWDAST 255 (319)
T ss_pred cCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEe-cCCCcEEEEcCCC
Confidence 999999999999873 2344667789999999999863 344444 3688999999875
No 306
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.04 Score=62.94 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=134.5
Q ss_pred cCCEEEEEECCCcEEEEECC-CCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE-------
Q 000694 1078 YKGLLCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE------- 1149 (1349)
Q Consensus 1078 sdg~LaSGS~DGtIrVWDl~-tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~------- 1149 (1349)
.++.|+.|..+| +.+++.. .... .... +..+|..+...|+-+.++.-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 456899999999 8999983 2222 2222 334499999999888777665 599999998763322100
Q ss_pred ------EecCCCCeEEec----CCCCEEEEEecCCeEEEEecCCcc-------eeeccCCCeEEEEeeCCEEEEEeCCCc
Q 000694 1150 ------VIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSRTL-------KDIYRSKGIKSMSVVQGKIYIGCMDSS 1212 (1349)
Q Consensus 1150 ------~~~h~~~V~sLs----~~g~~LvsgS~DgtIkVWDl~~~~-------~~~~~~~~V~~La~~dg~LlSGs~DGs 1212 (1349)
.......+..+. ..+...+++.....|.+|.+.... +.+.-...+.++.+-++.++.|..++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~- 158 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG- 158 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-
Confidence 112223344444 345556666677799988886421 22223345788888777777776544
Q ss_pred EEEEEccCCccccccccccc------cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--EecCCCCCeE
Q 000694 1213 IQELAVSNNVEREIKAPFKS------WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAPEKGTTIQ 1284 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~------~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~--tl~gH~~~Vt 1284 (1349)
..+.|+.++....+...... -.....++..+.... ..++++. +..-.+.|.. |+..+ .+.- ...+.
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~---~~~g~fv~~~-G~~~r~~~i~W-~~~p~ 232 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCY---DNIGVFVNKN-GEPSRKSTIQW-SSAPQ 232 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEe---cceEEEEcCC-CCcCcccEEEc-CCchh
Confidence 77789987754433211100 011223444444444 3555554 3333444443 33222 2221 22455
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 1322 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs 1322 (1349)
++++. ..|++..+. +.|.||++.+++.++.+...+
T Consensus 233 ~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 66553 457777665 559999999999999988543
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.51 E-value=0.011 Score=70.94 Aligned_cols=246 Identities=9% Similarity=0.082 Sum_probs=147.9
Q ss_pred ceEEEEEeeeeeecccCCCC--EE-EEEEc--CCEEEEEECCCcEEEEECCCCcee--EEEEeccCCCcEEEEEEcCCCC
Q 000694 1052 SRISCVHTQILEASHKCSGA--VT-ALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGE 1124 (1349)
Q Consensus 1052 ~~w~~~~t~tl~~~~gH~~~--Vt-~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~--~i~tL~gHss~VtsLafSpdg~ 1124 (1349)
-.|++....++..+.+-..+ .+ -+.|+ |.++|-- ....++|+++ ++... ..+.++ ...|....|+|.|+
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n 186 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGN 186 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCC
Confidence 35666666666555554444 44 45553 4443322 3346899997 43321 122222 35688889998753
Q ss_pred --EEE-----EEeCCCeEEEEEccCCeEEEEE-EecCCCCeEEecCCCCEEEEEe-----------cCCeEEEEecCCcc
Q 000694 1125 --SLL-----SGSADKTIGVWQMVQRKLELIE-VIATKEPIRKLDTYGKTIFAST-----------QGHRMKVIDSSRTL 1185 (1349)
Q Consensus 1125 --~La-----SGS~DGtIrVWDl~tg~~~~~~-~~~h~~~V~sLs~~g~~LvsgS-----------~DgtIkVWDl~~~~ 1185 (1349)
.|+ .++.++++++|.+..+..+... +..-.+.-..+...|+.+++-. ....+.++++.+..
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 344 3678899999999866554322 2222222223556666654432 12457788887533
Q ss_pred eeec--cCCCeEEEEe-eCC-E--EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEE--Eec
Q 000694 1186 KDIY--RSKGIKSMSV-VQG-K--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS--SSV 1257 (1349)
Q Consensus 1186 ~~~~--~~~~V~~La~-~dg-~--LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las--~S~ 1257 (1349)
.... ....|..+.| |.+ . +++|-.+..+.++|++..- .+....+.-+++.|+|...+++. +..
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl---------~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL---------RFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccce---------EEecCCcccccccccCcccEEEEecCCc
Confidence 3333 2345888998 544 2 3346789999999998872 12233344566778888776665 333
Q ss_pred CCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEECCCC
Q 000694 1258 EGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNS------SASSLQIWLRGTQ 1312 (1349)
Q Consensus 1258 dDgtIrIWDl~t~~-li~tl~gH~~~VtsLafSPDg~~LaSGS------~DGtVrVWDl~tg 1312 (1349)
-.|.+-+||..+.. ++..+.+. ..+-+.|+|||.++.+.. .|..|.|||+...
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 44789999987643 34355533 345578999999987764 3788999997643
No 308
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.47 E-value=0.028 Score=70.14 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=145.5
Q ss_pred EcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCC------cEE--EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 000694 1077 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK------AVT--SFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1077 fsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss------~Vt--sLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~ 1148 (1349)
+.++.++.++.||.|.-.|..+++. +..+..... .+. .+... ++..++.++.||.|..+|.++|+.+..
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 4588899999999999999999875 344332211 110 11111 226788888999999999999988765
Q ss_pred EEecCCC----CeEE-ecCCCCEEEEEe---------cCCeEEEEecCC-cceeeccC----------------------
Q 000694 1149 EVIATKE----PIRK-LDTYGKTIFAST---------QGHRMKVIDSSR-TLKDIYRS---------------------- 1191 (1349)
Q Consensus 1149 ~~~~h~~----~V~s-Ls~~g~~LvsgS---------~DgtIkVWDl~~-~~~~~~~~---------------------- 1191 (1349)
....... .+.+ ....+..++.++ .++.+..+|... ...-....
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 4332210 0111 112234555554 246677777652 11110000
Q ss_pred CCeE-EEEe--eCCEEEEEeCCC------------------cEEEEEccCCccccccc--cccccc--cCCCCe-EEEE-
Q 000694 1192 KGIK-SMSV--VQGKIYIGCMDS------------------SIQELAVSNNVEREIKA--PFKSWR--LQSKPI-NSLV- 1244 (1349)
Q Consensus 1192 ~~V~-~La~--~dg~LlSGs~DG------------------sI~IWDl~t~~~~~i~~--~lk~~~--~h~~~I-~sL~- 1244 (1349)
..+. ...+ .++.++.++.++ .|.-+|..+++..-... ....|. ....++ ..+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0011 1222 357788887665 78889999886432110 000111 111111 1111
Q ss_pred EcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE------------------eCCCcEEE
Q 000694 1245 VYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN------------------SSASSLQI 1306 (1349)
Q Consensus 1245 ~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSG------------------S~DGtVrV 1306 (1349)
........+..+..+|.+...|..+|+.+-..... ...++.+| ..+..+ ..+|.+.-
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence 11111122222335788999999999887665421 11233344 222221 23577888
Q ss_pred EECCCCcEEEEEeCC---------CCe--EEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1307 WLRGTQQKVGRISAG---------SKI--TSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1307 WDl~tg~~l~sl~~h---------s~V--tsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
.|..+|+.+.+.... ... ..+...++.|+.|+.||.|+.+|.
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 899999988777643 121 234567889999999999998874
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.00026 Score=87.87 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=148.3
Q ss_pred eecccCCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC--eEEEE
Q 000694 1063 EASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK--TIGVW 1138 (1349)
Q Consensus 1063 ~~~~gH~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DG--tIrVW 1138 (1349)
..++.|+..-+|++|+.+ .|+.|+..|.|+++++.+|.. .....+|.++|+-+.=+.+|..+++.+.-. -..+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 346788999999999744 799999999999999999875 567789999999999999998777554332 45789
Q ss_pred EccC-CeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcc--eeeccC-----CCeEEEEe-eCCEEEEEeC
Q 000694 1139 QMVQ-RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRS-----KGIKSMSV-VQGKIYIGCM 1209 (1349)
Q Consensus 1139 Dl~t-g~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~--~~~~~~-----~~V~~La~-~dg~LlSGs~ 1209 (1349)
++.+ +...+.+ .......|+.+...-+.|+......+||+.... ...+.. ..-++..| |.+.++- +
T Consensus 1173 ~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--n 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--N 1247 (1516)
T ss_pred ccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--e
Confidence 9864 2221111 111122344444444556666778999998422 221211 11345556 6666654 3
Q ss_pred CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1210 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1210 DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
|| .+||++..+.. +.|+.-... ..=.|||++.-++.. -.|||+++.+.++..+. -.-..+.|+
T Consensus 1248 dG--vLWDvR~~~aI------h~FD~ft~~-~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~--Ldqc~VtFN 1310 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAI------HRFDQFTDY-GGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPS--LDQCAVTFN 1310 (1516)
T ss_pred Cc--eeeeeccHHHH------hhhhhheec-ccccccCCCceEEee------chhhhhHHHHHHhcCcc--ccceEEEec
Confidence 44 46999876321 111111100 111478887666653 35899999877765542 223567787
Q ss_pred cCCCEEEEEe--CC---------------CcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 000694 1290 EDFIYLNYNS--SA---------------SSLQIWLRGTQQKVGRISAGSKITSLLTA 1330 (1349)
Q Consensus 1290 PDg~~LaSGS--~D---------------GtVrVWDl~tg~~l~sl~~hs~VtsLs~d 1330 (1349)
..|..++..- .| ...+-++......+.++.+...|..++.+
T Consensus 1311 stG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1311 STGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTE 1368 (1516)
T ss_pred cCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcC
Confidence 7777655432 00 12344455555566666665556555544
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.43 E-value=0.062 Score=62.43 Aligned_cols=208 Identities=16% Similarity=0.174 Sum_probs=119.8
Q ss_pred EEEEECCCc-EEEEECCCCceeEE------EEeccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEEccCCeEEEEE
Q 000694 1082 LCSGFSDGS-IKMWDIKKQSAMLV------WDVKEHRKAVTSFSLFEPGESLLSGSA-----DKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1082 LaSGS~DGt-IrVWDl~tg~~~~i------~tL~gHss~VtsLafSpdg~~LaSGS~-----DGtIrVWDl~tg~~~~~~ 1149 (1349)
++.+-.-|+ ..+||..+++.... +.|.|| -.|++||++|++.-. .|.|-|||...+-.....
T Consensus 20 vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E 93 (305)
T PF07433_consen 20 VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE 93 (305)
T ss_pred EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE
Confidence 344444442 35677777654211 234455 479999999998643 589999999843322222
Q ss_pred EecCCCCeE--EecCCCCEEEEEe------------------cCCeEEEEecC-Ccceee--c----cCCCeEEEEe-eC
Q 000694 1150 VIATKEPIR--KLDTYGKTIFAST------------------QGHRMKVIDSS-RTLKDI--Y----RSKGIKSMSV-VQ 1201 (1349)
Q Consensus 1150 ~~~h~~~V~--sLs~~g~~LvsgS------------------~DgtIkVWDl~-~~~~~~--~----~~~~V~~La~-~d 1201 (1349)
+..+.-.-. -+.+++..++++- .+..+...|.. +..... . +...+..+++ .+
T Consensus 94 ~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~ 173 (305)
T PF07433_consen 94 FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD 173 (305)
T ss_pred ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence 222221111 1456776666552 11223333332 222221 1 1223888888 77
Q ss_pred CEEEEEeCC-C-------cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 000694 1202 GKIYIGCMD-S-------SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 1273 (1349)
Q Consensus 1202 g~LlSGs~D-G-------sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li 1273 (1349)
|.++.|... | -|-+++-... ......+...|..-...+-+|++++++..++.+++.++.+.+||..++..+
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 877776542 1 1222222211 111222223344446789999999999888888999999999999999888
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe
Q 000694 1274 SIAPEKGTTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1274 ~tl~gH~~~VtsLafSPDg~~LaSGS 1299 (1349)
.... -..+..++..+++ +++|.+
T Consensus 253 ~~~~--l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 253 GSVP--LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred eccc--cCceeeeeecCCc-eEEeCC
Confidence 7654 3456777777776 666654
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.35 E-value=0.043 Score=68.57 Aligned_cols=236 Identities=10% Similarity=0.087 Sum_probs=134.9
Q ss_pred EEcC-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCc-----EE-EEEEcCCCCEEEEEe---------CCCeEEEEE
Q 000694 1076 IYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-----VT-SFSLFEPGESLLSGS---------ADKTIGVWQ 1139 (1349)
Q Consensus 1076 afsd-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~-----Vt-sLafSpdg~~LaSGS---------~DGtIrVWD 1139 (1349)
++.+ +.++.++.||.|.-+|.++|+. +..+...... +. +..+. +..++.++ .+|.+...|
T Consensus 106 ~~~~~~~V~v~~~~g~v~AlD~~TG~~--~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD 181 (488)
T cd00216 106 AYWDPRKVFFGTFDGRLVALDAETGKQ--VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYD 181 (488)
T ss_pred EEccCCeEEEecCCCeEEEEECCCCCE--eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEE
Confidence 4445 8899999999999999999886 4444322110 11 11221 24455553 368899999
Q ss_pred ccCCeEEEEEEecCCC-------------------CeE---EecCCCCEEEEEecCC------------------eEEEE
Q 000694 1140 MVQRKLELIEVIATKE-------------------PIR---KLDTYGKTIFASTQGH------------------RMKVI 1179 (1349)
Q Consensus 1140 l~tg~~~~~~~~~h~~-------------------~V~---sLs~~g~~LvsgS~Dg------------------tIkVW 1179 (1349)
..+|+........... .+. .+...+..++.++.++ .+.-+
T Consensus 182 ~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 182 VETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred CCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 9999877654332111 111 1233466777777655 57766
Q ss_pred ecCCcceeec-c--CCC-----------eEEEEeeCC----EEEEEeCCCcEEEEEccCCccccccccccccccCCCCeE
Q 000694 1180 DSSRTLKDIY-R--SKG-----------IKSMSVVQG----KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPIN 1241 (1349)
Q Consensus 1180 Dl~~~~~~~~-~--~~~-----------V~~La~~dg----~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~ 1241 (1349)
|.......-. . .+. +..+.-.++ .+++++.+|.+..+|..+++. .|..... ..
T Consensus 262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--------~W~~~~~-~~ 332 (488)
T cd00216 262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--------ISARPEV-EQ 332 (488)
T ss_pred cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--------eeEeEee-cc
Confidence 7652211111 0 010 111110122 366788999999999999963 2322100 01
Q ss_pred EEEEcCCceEEEEE---------------ecCCCeEEEEECCCCCeEEEecCCC--------CCeEEEEEecCCCEEEEE
Q 000694 1242 SLVVYKDWLYSASS---------------SVEGSNIKEWRRHRKPQISIAPEKG--------TTIQAMAVVEDFIYLNYN 1298 (1349)
Q Consensus 1242 sL~~~pd~i~las~---------------S~dDgtIrIWDl~t~~li~tl~gH~--------~~VtsLafSPDg~~LaSG 1298 (1349)
.+...|+.+++.+. ...+|.+.-.|..+|+.+-...... .+...-...-.+..++.|
T Consensus 333 ~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g 412 (488)
T cd00216 333 PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG 412 (488)
T ss_pred ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence 12333444443221 1135678888998888776654321 111111111256788888
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCe
Q 000694 1299 SSASSLQIWLRGTQQKVGRISAGSKI 1324 (1349)
Q Consensus 1299 S~DGtVrVWDl~tg~~l~sl~~hs~V 1324 (1349)
+.||.|+.+|..+|+.+.+.+....+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCc
Confidence 99999999999999999988865543
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.0068 Score=75.62 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=73.1
Q ss_pred ceeecccccccccccccCCCceEE-EEEeeeeeeccc--CCCCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEE
Q 000694 1032 NVTWMAEELHKAADYYLPNISRIS-CVHTQILEASHK--CSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWD 1106 (1349)
Q Consensus 1032 ~vsw~a~ellkv~~~~~p~~~~w~-~~~t~tl~~~~g--H~~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~t 1106 (1349)
..+|+|.+-+..-.++.|. +..+ -+...+.+-... -.-.+++++|++. .|+.|-.-|.+.+|...+.+. -..
T Consensus 20 i~SWHPsePlfAVA~fS~e-r~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~--htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPE-RGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET--HTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCC-CCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee--eee
Confidence 4788888865554444432 2222 111112221111 1223568999765 489999999999999988653 222
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 000694 1107 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1107 L~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~ 1141 (1349)
...|+.+|..+.|+++|..++|+..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34699999999999999999999999999999875
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.00034 Score=79.87 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=104.7
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC---eEEEEEEecCCCC
Q 000694 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR---KLELIEVIATKEP 1156 (1349)
Q Consensus 1080 g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg---~~~~~~~~~h~~~ 1156 (1349)
++-++.|.+-.|-+-|+++|-. +.|. .++.|.++.|...++.++.|..+|.|.+.|++.+ ...+....-|...
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss 300 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS 300 (425)
T ss_pred eeeecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence 3446777778888999998752 3444 6778999999999999999999999999999864 3334555678888
Q ss_pred eEEec---CCCCEEEEEecCCeEEEEecCC--c--ceeeccCCCeEEEE-----e--eCCEEEEEeCCCcEEEEEccCCc
Q 000694 1157 IRKLD---TYGKTIFASTQGHRMKVIDSSR--T--LKDIYRSKGIKSMS-----V--VQGKIYIGCMDSSIQELAVSNNV 1222 (1349)
Q Consensus 1157 V~sLs---~~g~~LvsgS~DgtIkVWDl~~--~--~~~~~~~~~V~~La-----~--~dg~LlSGs~DGsI~IWDl~t~~ 1222 (1349)
|+++. ..++.+++.+.+|+|++||.+- . ....+.+| |+..+ + .+|.++++++|...++|.+..+.
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 88854 6889999999999999999982 1 12222222 22222 1 56788899999999999999875
Q ss_pred c
Q 000694 1223 E 1223 (1349)
Q Consensus 1223 ~ 1223 (1349)
.
T Consensus 380 L 380 (425)
T KOG2695|consen 380 L 380 (425)
T ss_pred e
Confidence 3
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.0072 Score=75.10 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=143.1
Q ss_pred CCCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC------------CEEEEEeCCCeE
Q 000694 1069 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG------------ESLLSGSADKTI 1135 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg------------~~LaSGS~DGtI 1135 (1349)
...-.++.|+ .|.+|-|+. ..|.|-|..+-+. ++.+.-|...|+.+.|.|-. -.|+++...|.|
T Consensus 15 ~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~--iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQL--IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccceEEEecC-ceEEEEehhhhhh--hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3345678886 456666654 5677888887544 78888999999999998622 257788888999
Q ss_pred EEEEccCCeEEEEEEecCCCCeEEec-----CCC-CEEEEEecCCeEEEEecCCcceeeccC---CCeEEEEe-e--CCE
Q 000694 1136 GVWQMVQRKLELIEVIATKEPIRKLD-----TYG-KTIFASTQGHRMKVIDSSRTLKDIYRS---KGIKSMSV-V--QGK 1203 (1349)
Q Consensus 1136 rVWDl~tg~~~~~~~~~h~~~V~sLs-----~~g-~~LvsgS~DgtIkVWDl~~~~~~~~~~---~~V~~La~-~--dg~ 1203 (1349)
.+||...+...+ .+..+.+++..+. .+. ..+++.....++.+|+.....+..... ....|+.+ | ..+
T Consensus 92 il~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASVIN-WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhhhh-hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999998876543 3445666776533 333 567777778899999877433322221 12455665 2 223
Q ss_pred EEEEeCCCcEEEEEccCC-------ccccccccccc----------cccCCC---------CeEEEEEcCCce--EEEEE
Q 000694 1204 IYIGCMDSSIQELAVSNN-------VEREIKAPFKS----------WRLQSK---------PINSLVVYKDWL--YSASS 1255 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~-------~~~~i~~~lk~----------~~~h~~---------~I~sL~~~pd~i--~las~ 1255 (1349)
+..-+..|.+-+.+.-.. +...|...... -..+.. ....++++|.+. ..+++
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 333333444444433111 11111000000 000000 011235566643 33444
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCC
Q 000694 1256 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF--IYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg--~~LaSGS~DGtVrVWDl~t 1311 (1349)
.+.+.++|++-..++....-..+.+.-+.+-|++ ..|.++-.||.+.+|-.+.
T Consensus 251 ---prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 251 ---PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ---ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 4569999998888887776666666667777765 5789999999999996554
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0069 Score=70.78 Aligned_cols=247 Identities=13% Similarity=0.036 Sum_probs=134.8
Q ss_pred EEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ec-CCCCE
Q 000694 1091 IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LD-TYGKT 1166 (1349)
Q Consensus 1091 IrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls-~~g~~ 1166 (1349)
+++.+..+-+. ...+.+|...|.+++|+|... .+..++.+.+|+|.|+++....... ..+ ..+++ |. .+.+.
T Consensus 175 v~~l~~~~fks--sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKS--SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcch--hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCCcce
Confidence 55555555333 446678899999999999887 6788999999999999987665333 333 55555 44 34677
Q ss_pred EEEEecCCeEEEEecCCcceee------ccCCCeEEEEe-eC------CEEEEEeCCCcEEEEEccCCcccccccccccc
Q 000694 1167 IFASTQGHRMKVIDSSRTLKDI------YRSKGIKSMSV-VQ------GKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 1233 (1349)
Q Consensus 1167 LvsgS~DgtIkVWDl~~~~~~~------~~~~~V~~La~-~d------g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~ 1233 (1349)
++.|-.+|.|.+||++...... ....+|..++. +. |-++++.. -....|.+........ .+.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p----~vl 325 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLP----CVL 325 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCC----ccc
Confidence 8888999999999998422111 12233555554 22 22333221 2234455533211100 000
Q ss_pred cc-CCCCeEEEEEcCCceEE-EEEecCCC-----eEE-EEECCCCCeEE-EecCC-CC------CeEEEEEecCCCEEE-
Q 000694 1234 RL-QSKPINSLVVYKDWLYS-ASSSVEGS-----NIK-EWRRHRKPQIS-IAPEK-GT------TIQAMAVVEDFIYLN- 1296 (1349)
Q Consensus 1234 ~~-h~~~I~sL~~~pd~i~l-as~S~dDg-----tIr-IWDl~t~~li~-tl~gH-~~------~VtsLafSPDg~~La- 1296 (1349)
.. ..+...+++.++....+ ++.-++.+ .|- --|..+|..+. .-.++ ++ .-..+.-.++.++++
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 11 12334444444422222 22211000 000 01111122211 11111 11 011122234555554
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc----CCEEEEEECCCcEEEee
Q 000694 1297 YNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA----NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1297 SGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d----g~~LaSGS~DGtIrIWD 1347 (1349)
.|+....+.+||..+++.+.++.-..+|..+.+. +.+|+.-++| .++||.
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDD-RVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhheecc-eEEEEe
Confidence 4556688999999999999999988889998863 4477777655 477653
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.34 E-value=0.23 Score=56.00 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=125.7
Q ss_pred EEEEc--CCE-EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1074 ALIYY--KGL-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF-EPGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1074 ~Lafs--dg~-LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafS-pdg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
+++|. ++. +++.-..+.|..|+..++... ...+. . ...+++. +++ .++.+..++ +.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEe
Confidence 46674 454 666667899999999987642 22222 2 6777777 665 455555554 456699998765433
Q ss_pred Eec-CC---CCeEE--ecCCCCEEEEEecC--------CeEEEEecCCcceeecc-CCCeEEEEe-eCCE-EE-EEeCCC
Q 000694 1150 VIA-TK---EPIRK--LDTYGKTIFASTQG--------HRMKVIDSSRTLKDIYR-SKGIKSMSV-VQGK-IY-IGCMDS 1211 (1349)
Q Consensus 1150 ~~~-h~---~~V~s--Ls~~g~~LvsgS~D--------gtIkVWDl~~~~~~~~~-~~~V~~La~-~dg~-Ll-SGs~DG 1211 (1349)
... .. ..... +.++|+..++.... |.+..++..+....... ....+.+++ ++++ ++ +-+..+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccc
Confidence 331 11 22333 45777755554433 45667777644333332 233678888 6664 55 456788
Q ss_pred cEEEEEccCCcc-ccccccccccccCC--CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 000694 1212 SIQELAVSNNVE-REIKAPFKSWRLQS--KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1288 (1349)
Q Consensus 1212 sI~IWDl~t~~~-~~i~~~lk~~~~h~--~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf 1288 (1349)
.|..|++..... ..- ......... .....+++..++...++.. ..+.|.++|.+ |+.+..+......+++++|
T Consensus 157 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSN--RRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEE--EEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceee--eeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 899999864321 100 000112222 2377888887765555433 46789999988 8888877766668999999
Q ss_pred e-cCCCEEEEE
Q 000694 1289 V-EDFIYLNYN 1298 (1349)
Q Consensus 1289 S-PDg~~LaSG 1298 (1349)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 665655443
No 317
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.03 Score=69.69 Aligned_cols=266 Identities=10% Similarity=0.064 Sum_probs=152.3
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE---EE
Q 000694 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL---EL 1147 (1349)
Q Consensus 1071 ~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~---~~ 1147 (1349)
..+|++..+.+++.|+.-|.+++|+-.++.. ......+-.+.+..+..+++..+++.|+..|.|.|+.+..+.. ..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 4456666788999999999999999998764 2333444556677788889999999999999999998876321 11
Q ss_pred E--EEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCcc------eeec-cCCCeEEEEeeCCEEEEEeCCCcEEEE
Q 000694 1148 I--EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL------KDIY-RSKGIKSMSVVQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1148 ~--~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~------~~~~-~~~~V~~La~~dg~LlSGs~DGsI~IW 1216 (1349)
. ....|+..|++ |+.++..+++|...|+|..-.++... +.+. ....|..+.+-++.++..+--..+ ++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~-Lc 194 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI-LC 194 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhh-ee
Confidence 1 11235677887 55889999999999999887776411 1111 122366666666666654333332 34
Q ss_pred EccCCccccccccccccccCCCCeEEEEEcCC-----ceEEEEEecCCCeEEEEECCC-CCeEEEecC------------
Q 000694 1217 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-----WLYSASSSVEGSNIKEWRRHR-KPQISIAPE------------ 1278 (1349)
Q Consensus 1217 Dl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd-----~i~las~S~dDgtIrIWDl~t-~~li~tl~g------------ 1278 (1349)
++..+....+-...+. + ... ...+|.|+ ...+.++-+ + .|+|..+- |.++++..-
T Consensus 195 ~tE~eti~QIG~k~R~--~-~~~-~GACF~~g~~~~q~~~IycaRP-G--~RlWead~~G~V~~Thqfk~ala~~p~p~i 267 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRK--S-LID-FGACFFPGQCKAQKPQIYCARP-G--LRLWEADFAGEVIKTHQFKDALARPPAPEI 267 (726)
T ss_pred ecchhHHHHhcCCCcC--C-ccc-cceEEeeccccCCCceEEEecC-C--CceEEeecceeEEEeeehhhhhccCCCCcc
Confidence 4444433222111110 0 001 11222222 222222211 2 56776543 444433211
Q ss_pred -CCC-----------CeEEEEEe----cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCc
Q 000694 1279 -KGT-----------TIQAMAVV----EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGL 1342 (1349)
Q Consensus 1279 -H~~-----------~VtsLafS----PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~~LaSGS~DGt 1342 (1349)
+.. .-..+.|. -.+..+.+-+.-| |+|+|..+.+.+.-..+...|..++.+|+-|++-..||.
T Consensus 268 ~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~ 346 (726)
T KOG3621|consen 268 PIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRG 346 (726)
T ss_pred cCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCc
Confidence 000 00111111 1222344444344 888888877666655566678888888888888878886
Q ss_pred EEEe
Q 000694 1343 IKGW 1346 (1349)
Q Consensus 1343 IrIW 1346 (1349)
+++.
T Consensus 347 l~~~ 350 (726)
T KOG3621|consen 347 LKVE 350 (726)
T ss_pred eeEE
Confidence 6554
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.27 E-value=0.12 Score=60.72 Aligned_cols=253 Identities=12% Similarity=0.083 Sum_probs=137.5
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEecCC-CC-
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIATK-EP- 1156 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS----------~DGtIrVWDl~tg~~~~~~~~~h~-~~- 1156 (1349)
+.+.|.|..+++. +..+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-..........+ ..
T Consensus 17 ~rv~viD~d~~k~--lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcE--EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4688999988775 555542 2233466789999888643 345789999999877655554433 11
Q ss_pred ------eEEecCCCCEEEEEecC--CeEEEEecCC-cceeeccCCCeEEEE-eeCCEEEEEeCCCcEEEEEccC-Ccccc
Q 000694 1157 ------IRKLDTYGKTIFASTQG--HRMKVIDSSR-TLKDIYRSKGIKSMS-VVQGKIYIGCMDSSIQELAVSN-NVERE 1225 (1349)
Q Consensus 1157 ------V~sLs~~g~~LvsgS~D--gtIkVWDl~~-~~~~~~~~~~V~~La-~~dg~LlSGs~DGsI~IWDl~t-~~~~~ 1225 (1349)
...++.+++++++.... ..|.|.|+.. .........+...+- ..+..+.+-|.||++.-..+.. |+..
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~- 171 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA- 171 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-
Confidence 12244555555544332 2455666552 222222222211111 1456788899999999999974 4432
Q ss_pred ccccccccccCCCCeEEE-EE-cCCceEEEEEecCCCeEEEEECCCCCeE--EEecCC----------CCCeEEEEEecC
Q 000694 1226 IKAPFKSWRLQSKPINSL-VV-YKDWLYSASSSVEGSNIKEWRRHRKPQI--SIAPEK----------GTTIQAMAVVED 1291 (1349)
Q Consensus 1226 i~~~lk~~~~h~~~I~sL-~~-~pd~i~las~S~dDgtIrIWDl~t~~li--~tl~gH----------~~~VtsLafSPD 1291 (1349)
......+.....++..- .. ..++.+.... -.|.|+-.|+...... ..+.-- .+.-.-+++++.
T Consensus 172 -~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S--y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 172 -QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS--YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp -EEEEEESSTTTS-B-S--EEETTTTEEEEEB--TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred -EeeccccCCCCcccccccceECCCCeEEEEe--cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 22223444444443321 22 2223333221 2567777776554321 111100 012334677765
Q ss_pred CCEEEEEe--------CCCc--EEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEE-ECCCcEEEeeCC
Q 000694 1292 FIYLNYNS--------SASS--LQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCG-TETGLIKGWIPL 1349 (1349)
Q Consensus 1292 g~~LaSGS--------~DGt--VrVWDl~tg~~l~sl~~hs~VtsLs~d--g~-~LaSG-S~DGtIrIWD~L 1349 (1349)
...|..-- .|+. |.++|+.+++.+.++.....+.+|..+ .+ .|++. ..+|.+.+||..
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 55444321 1222 566699999999999976667778774 22 55544 468999999963
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.22 E-value=0.17 Score=56.69 Aligned_cols=260 Identities=10% Similarity=0.094 Sum_probs=131.4
Q ss_pred CCEEEEEE-cCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 000694 1070 GAVTALIY-YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 1147 (1349)
Q Consensus 1070 ~~Vt~Laf-sdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~Vt-sLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~ 1147 (1349)
+.|.|-+. -+++++.|.+.|.+++.+.++|.. .+.+..- +.|. .....+++..++.|+.|++....|..+..++.
T Consensus 53 ~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 53 VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred ceeeeeeEEECCEEEEEEccCcEEEEEecchhh--eeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 34444443 367899999999999999999864 3444322 1222 22345789999999999999999999887766
Q ss_pred EEEecCCCCeE-EecCCCCEEEEEecCCeEEEEecCCcc-ee---------eccCC----CeEEEEeeCCEEEEEeCCCc
Q 000694 1148 IEVIATKEPIR-KLDTYGKTIFASTQGHRMKVIDSSRTL-KD---------IYRSK----GIKSMSVVQGKIYIGCMDSS 1212 (1349)
Q Consensus 1148 ~~~~~h~~~V~-sLs~~g~~LvsgS~DgtIkVWDl~~~~-~~---------~~~~~----~V~~La~~dg~LlSGs~DGs 1212 (1349)
+..-+....+. .+.+....++++...|.+.--..+... .. ++... .-.++..-||.+.+-+..|
T Consensus 130 kskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG- 208 (354)
T KOG4649|consen 130 KSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG- 208 (354)
T ss_pred ecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC-
Confidence 53222111111 255545555555555554433332111 11 11110 0111111455555544444
Q ss_pred EEEEEccCCccccccccccccccC--CCCe-EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQ--SKPI-NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h--~~~I-~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
-.+|..+++.. .|... ..|- ..+.+-.++-+..-.. .. .-.+|..++|...+.+.... ...+++
T Consensus 209 ~qvwr~~t~Gp--------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p-~~-ghL~w~~~~g~t~~vy~~p~---l~F~~h 275 (354)
T KOG4649|consen 209 RQVWRPATKGP--------IFMEPCESRPSCQQISLENENCFCAPLP-IA-GHLLWATQSGTTLHVYLSPK---LRFDLH 275 (354)
T ss_pred cEEEeecCCCc--------eecccccCCCcceEEEEecCCeEEEecc-cc-ceEEEEecCCcEEEEEeCcc---cceecc
Confidence 33455444321 11111 1111 2233333333322221 11 24567766664433322111 012222
Q ss_pred -c---CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-C---eEEEE-----Ec-----CCEEEEEECCCcEEEeeC
Q 000694 1290 -E---DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-K---ITSLL-----TA-----NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1290 -P---Dg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~---VtsLs-----~d-----g~~LaSGS~DGtIrIWD~ 1348 (1349)
| ..+++..++.||.+.|--... .+..+..++ . +.++. |+ +.+|+.|+.|..++-||.
T Consensus 276 ~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl 350 (354)
T KOG4649|consen 276 SPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDL 350 (354)
T ss_pred CCCCcchhhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEec
Confidence 2 245677788899988774332 233333221 1 23222 11 347889999999999985
No 320
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.14 E-value=0.075 Score=65.17 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=106.1
Q ss_pred CEEEEEEc-CC-E-EEEEECC---CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCC--CeEEEEEcc
Q 000694 1071 AVTALIYY-KG-L-LCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSAD--KTIGVWQMV 1141 (1349)
Q Consensus 1071 ~Vt~Lafs-dg-~-LaSGS~D---GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~D--GtIrVWDl~ 1141 (1349)
.+..-.|+ +| . ++..+.+ ..|.++|+.+++...+.. ..+.+....|+|||+.++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56678885 44 3 5544443 569999999987654433 345566788999998766 44333 567777887
Q ss_pred CCeEEEEEEecCCCCeEEecCCCCEEEEEecC-C--eEEEEecCCcce-eeccCCCeEEEEe-eCCEEE-EEeC-C----
Q 000694 1142 QRKLELIEVIATKEPIRKLDTYGKTIFASTQG-H--RMKVIDSSRTLK-DIYRSKGIKSMSV-VQGKIY-IGCM-D---- 1210 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~D-g--tIkVWDl~~~~~-~~~~~~~V~~La~-~dg~Ll-SGs~-D---- 1210 (1349)
++.............-..++++|+.++..+.. + .|.++|+.+... .+... +.....+ |+|..+ ..+. +
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCccc
Confidence 77653322111112223588999988887743 3 577778774332 22221 2112355 777643 2222 2
Q ss_pred ----CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCC
Q 000694 1211 ----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHR 1269 (1349)
Q Consensus 1211 ----GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDg--tIrIWDl~t 1269 (1349)
..|.+.|+.++....+ ... .......|+|++..++-....++ .+.+.++..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~L-------T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRL-------TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCeEEC-------CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688888877754332 111 12224678888765544333232 355556544
No 321
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.12 E-value=0.018 Score=80.35 Aligned_cols=285 Identities=16% Similarity=0.156 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHhcccchhhHHHHHHHHHHhhh---cCcchhhhhhhcCCChhHHHHHHhhc----chhhhhhhhhcCCCh
Q 000694 574 DVILEQLLTAISASKEETVIRASVSILTTIIL---ANESVIEDIKKKGLRLSDLATALKRN----VPEAAILIYLIKPSP 646 (1349)
Q Consensus 574 ~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~---~~~~~~~~~~~~d~~~~~~~~~lk~~----~~~aavl~yll~p~~ 646 (1349)
+.+|..+++. +.+.++.++..++-.|+-++. .++.+.+.+. ..--++.|+.||+.| -.+|+-.|+-+....
T Consensus 563 ~~~I~~Lv~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~-~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 563 AATISQLTAL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA-ANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh-ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3445555543 456666666666666544433 4443334322 234789999999987 667777777776543
Q ss_pred ----hhhhhhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcC
Q 000694 647 ----TEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQ 722 (1349)
Q Consensus 647 ----~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~ 722 (1349)
.++...+.+|.++..|..++. + .-++||.++ -+|..+.++ .|...+ ...++|+-|++.+..+
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~-~--------v~keAA~AL-~nL~~~~~~-~q~~~~---v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTE-A--------VATQSARAL-AALSRSIKE-NRKVSY---AAEDAIKPLIKLAKSS 706 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCh-H--------HHHHHHHHH-HHHHhCCCH-HHHHHH---HHcCCHHHHHHHHhCC
Confidence 457788999999999997553 1 123455544 455444432 222223 3455666788888888
Q ss_pred ChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccCchhHHH-HHHHhhhcCchh
Q 000694 723 NLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAID-LLQRIHKEGNIN 801 (1349)
Q Consensus 723 ~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~~-~l~~i~~~g~~~ 801 (1349)
+.+-+..++..|-.+.+........++... ..|++++|+++..+.|..|..-|++|.+= ....+ +..-+...|
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~--~~~~~~~~~~~~~~g--- 780 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDI-ILPLTRVLREGTLEGKRNAARALAQLLKH--FPVDDVLKDSVQCRG--- 780 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCc-HHHHHHHHHhCChHHHHHHHHHHHHHHhC--CChhHHHHHHHHHhC---
Confidence 999999999988887776665555555555 89999999999999999999999998742 34555 445555555
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCC--------CCcchH--HHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 000694 802 ILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTG--------KSVFTE--EAMQVILKAVASEESSTMQLLSSFILSNI 871 (1349)
Q Consensus 802 ~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~--------~s~yre--eAv~~i~~al~~~~~~~~q~~~~~al~~l 871 (1349)
+|+-|+.+|...-.|..-. ..-|-=|.+|..+.. ..++-| +-++-|++|| ....+-+|.+|-++|--|
T Consensus 781 ~v~~l~~~L~~~~~~~~~~-~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 781 TVLALVDLLNSTDLDSSAT-SEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred cHHHHHHHHhcCCcchhhH-HHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 5888899999988887544 112222333433322 223333 5688999999 556999999999999877
Q ss_pred Cc-ccccCCchh
Q 000694 872 GG-TFSWTGEPY 882 (1349)
Q Consensus 872 ~g-~fs~sG~~~ 882 (1349)
.+ .+.--|+.+
T Consensus 859 ~~~~~~~~~~~~ 870 (2102)
T PLN03200 859 CRDQPVVLGDLI 870 (2102)
T ss_pred hccChhHHHHHH
Confidence 54 334444443
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.09 E-value=0.18 Score=58.60 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=128.1
Q ss_pred EEEEEEcCC-CCEEEEEeCCCe-EEEEEccCCeEEEEEEecCCCC---eEEecCCCCEEEEEec-----CCeEEEEecCC
Q 000694 1114 VTSFSLFEP-GESLLSGSADKT-IGVWQMVQRKLELIEVIATKEP---IRKLDTYGKTIFASTQ-----GHRMKVIDSSR 1183 (1349)
Q Consensus 1114 VtsLafSpd-g~~LaSGS~DGt-IrVWDl~tg~~~~~~~~~h~~~---V~sLs~~g~~LvsgS~-----DgtIkVWDl~~ 1183 (1349)
...++.+|+ +..++.+-.-|+ ..+||..+|+...........- =-.|+++|..+++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 345778884 455666666664 5689999988765433322211 2247899999998754 46899999984
Q ss_pred cceee--ccCCC--eEEEEe-eCC-EEEEE--e----------------CCCcEEEEEccCCcccccccccccc--ccCC
Q 000694 1184 TLKDI--YRSKG--IKSMSV-VQG-KIYIG--C----------------MDSSIQELAVSNNVEREIKAPFKSW--RLQS 1237 (1349)
Q Consensus 1184 ~~~~~--~~~~~--V~~La~-~dg-~LlSG--s----------------~DGsI~IWDl~t~~~~~i~~~lk~~--~~h~ 1237 (1349)
....+ +..++ -..+.+ +|| .|+++ + .+.++...|..+++...- ..+ ..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q----~~Lp~~~~~ 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ----VELPPDLHQ 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee----eecCccccc
Confidence 33322 22222 344445 777 44432 2 123455555555542211 011 2255
Q ss_pred CCeEEEEEcCCceEEEEEecCC------CeEEEEECCCCCeEEEec-------CCCCCeEEEEEecCCCEEEEEe-CCCc
Q 000694 1238 KPINSLVVYKDWLYSASSSVEG------SNIKEWRRHRKPQISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASS 1303 (1349)
Q Consensus 1238 ~~I~sL~~~pd~i~las~S~dD------gtIrIWDl~t~~li~tl~-------gH~~~VtsLafSPDg~~LaSGS-~DGt 1303 (1349)
..|+.+++.+++...++.-..+ --+-+++... .+..+. .-.+.+-+|++++++.+++..+ ..|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 6788899998887666543211 1234444322 222222 2345788999999999886666 6789
Q ss_pred EEEEECCCCcEEEEEeCCCCeEEEEEc-CCEEEEEEC
Q 000694 1304 LQIWLRGTQQKVGRISAGSKITSLLTA-NDIVLCGTE 1339 (1349)
Q Consensus 1304 VrVWDl~tg~~l~sl~~hs~VtsLs~d-g~~LaSGS~ 1339 (1349)
+.+||..+++.+....-.. +..++.. +.++++.+.
T Consensus 241 ~~~~d~~tg~~~~~~~l~D-~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPD-ACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EEEEECCCCCEeeccccCc-eeeeeecCCceEEeCCC
Confidence 9999999999887765322 3444443 335555444
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.018 Score=72.34 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=92.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEEccC-CeEEEEEEecC
Q 000694 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-----GESLLSGSADKTIGVWQMVQ-RKLELIEVIAT 1153 (1349)
Q Consensus 1080 g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpd-----g~~LaSGS~DGtIrVWDl~t-g~~~~~~~~~h 1153 (1349)
.+++|||.||+|.|-.+.+.+......| ..++.+|+++|+ .+.+++||.-| +.++.-+- |..........
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 3899999999999999988765333333 478999999998 46799999888 66654221 22222345567
Q ss_pred CCCeEEecCCCCEEEEEecCCeEEEEecCCccee--eccCCC-------eEEEEe-eCCEEEEEeCCCcEEEEEccCC
Q 000694 1154 KEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IYRSKG-------IKSMSV-VQGKIYIGCMDSSIQELAVSNN 1221 (1349)
Q Consensus 1154 ~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~--~~~~~~-------V~~La~-~dg~LlSGs~DGsI~IWDl~t~ 1221 (1349)
.++|.++.+.|+.++.++.+| |+|||....... +...+. -..+.| ++..++. |+..+|++..++.+
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICSIKKR 235 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEEEecc
Confidence 889999999999999886655 799998732211 111111 334556 4455554 46678888888733
No 324
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.022 Score=66.69 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=129.1
Q ss_pred ecccCCCCEEEEEEc---CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 000694 1064 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1064 ~~~gH~~~Vt~Lafs---dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWD 1139 (1349)
...+|...|..++|+ .|.+..++.+..|+|.|+++... +.++..| ..+++++|.-|. .+|+.|-..|.|.|||
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 456788999999995 45899999999999999999755 6667767 789999999766 5688888999999999
Q ss_pred ccCCeEEEEEEe--cCCCCeEEec--------CCCCEEEEEecCCeEEEEecCCc---cee---eccCCCeEEEEe--eC
Q 000694 1140 MVQRKLELIEVI--ATKEPIRKLD--------TYGKTIFASTQGHRMKVIDSSRT---LKD---IYRSKGIKSMSV--VQ 1201 (1349)
Q Consensus 1140 l~tg~~~~~~~~--~h~~~V~sLs--------~~g~~LvsgS~DgtIkVWDl~~~---~~~---~~~~~~V~~La~--~d 1201 (1349)
++..+-...... -...+|..++ +.+..++.... .+..|..... ... ........++.+ ..
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 987543211111 1234455443 22333333222 2344554321 111 110111222222 11
Q ss_pred CEEE-EEeC-----------------CCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 000694 1202 GKIY-IGCM-----------------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 1263 (1349)
Q Consensus 1202 g~Ll-SGs~-----------------DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIr 1263 (1349)
++++ +.-. ||. .+|..+.+- ...+.-..+.. ..+.-.++..+++..+.+-+.+.
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~-----~Gs~~~kl~t~--~ai~~~~~nn~iv~~gd~tn~li 414 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTY-----FGSKQTKLSTT--QAIRAVEDNNYIVVVGDSTNELI 414 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccc-----cCCcccccccc--cceeccccccEEEEecCCcceeE
Confidence 2222 1111 111 111111100 00000000001 11222344455666655567899
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECC
Q 000694 1264 EWRRHRKPQISIAPEKGTTIQAMAVVE--DFIYLNYNSSASSLQIWLRG 1310 (1349)
Q Consensus 1264 IWDl~t~~li~tl~gH~~~VtsLafSP--Dg~~LaSGS~DGtVrVWDl~ 1310 (1349)
+||..++..+.++.-. .+|.++.... .+.+|++-. |..++||..+
T Consensus 415 l~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 415 LQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred EeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999999999888743 7788877653 234555543 6678887654
No 325
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.90 E-value=0.0083 Score=67.85 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=130.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-EEEEE---EecCCC------------CeEE---ec-CCCCEEEEE
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LELIE---VIATKE------------PIRK---LD-TYGKTIFAS 1170 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~-~~~~~---~~~h~~------------~V~s---Ls-~~g~~Lvsg 1170 (1349)
...|+++.|...|.+|++|...|.|.++.-.... +.... +..|.. .|.. +. ...+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999754422 22111 222221 1222 22 334567888
Q ss_pred ecCCeEEEEecCCcceeeccCCC-eEEEEee-CCEEEEEeCCCcEEEEEccCCcccccccccccc-ccCCCCeEEEEEcC
Q 000694 1171 TQGHRMKVIDSSRTLKDIYRSKG-IKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW-RLQSKPINSLVVYK 1247 (1349)
Q Consensus 1171 S~DgtIkVWDl~~~~~~~~~~~~-V~~La~~-dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~-~~h~~~I~sL~~~p 1247 (1349)
+.|.+|++|.+............ -.++.+| +|.+.+. ..+++=.+..........+.++. +.|..-|+++.++.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 89999999998743322222111 1112221 1111110 00000000000000001122333 56778899999999
Q ss_pred CceEEEEEecCCCeEEEEECCCC---CeEEEecCCC-----CCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc-----
Q 000694 1248 DWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKG-----TTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQ----- 1313 (1349)
Q Consensus 1248 d~i~las~S~dDgtIrIWDl~t~---~li~tl~gH~-----~~VtsLafSPD-g~~LaSGS~DGtVrVWDl~tg~----- 1313 (1349)
+..+.++. +|=.|.+|++.-- -.+-.++.|. .-|++..|+|. ...+.-.+..|.|++-|++...
T Consensus 183 D~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 98888765 5778999997531 1223333343 36788889984 4555566678999999987432
Q ss_pred -EEEEE--eC--C-------CCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1314 -KVGRI--SA--G-------SKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1314 -~l~sl--~~--h-------s~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
.+... .+ + +.|..+.|+ |+++++-+. -+|+|||.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 11111 11 1 125555564 667776654 57999984
No 326
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.89 E-value=0.15 Score=62.43 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcCC
Q 000694 1280 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTAND 1332 (1349)
Q Consensus 1280 ~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h--s~VtsLs~dg~ 1332 (1349)
.+++..|++||+|+++|.-..+|.+.|....-.+.+..+..+ .....+.|.|+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 457999999999999999999999999987666677666654 44667777654
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.88 E-value=0.0054 Score=77.44 Aligned_cols=144 Identities=15% Similarity=0.253 Sum_probs=101.7
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEEcc
Q 000694 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---------DKTIGVWQMV 1141 (1349)
Q Consensus 1071 ~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~---------DGtIrVWDl~ 1141 (1349)
.|+-++.++..+++|...|+|.+-|.++-+. ++++..|++.|.++.. .|+.|+|||. |..|+|||++
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~--iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFET--IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCce--eeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence 4777777788999999999999999998654 9999999999987665 7889999875 5678999998
Q ss_pred CCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEe---cCCcc---eeecc-CCCeEEEEe-eCCE-EEEEeCCC
Q 000694 1142 QRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVID---SSRTL---KDIYR-SKGIKSMSV-VQGK-IYIGCMDS 1211 (1349)
Q Consensus 1142 tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWD---l~~~~---~~~~~-~~~V~~La~-~dg~-LlSGs~DG 1211 (1349)
.-+.+......-......+. .-...+++++..|...+-| +.... ..+.. +..+..+.+ +++. ++.|..+|
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 76543211111111122233 3356788889999999888 33221 22222 233777777 5555 55688999
Q ss_pred cEEEEEc
Q 000694 1212 SIQELAV 1218 (1349)
Q Consensus 1212 sI~IWDl 1218 (1349)
.|.+|--
T Consensus 335 ~v~~wa~ 341 (1118)
T KOG1275|consen 335 HVNLWAD 341 (1118)
T ss_pred cEeeecC
Confidence 9999973
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.85 E-value=0.068 Score=70.07 Aligned_cols=230 Identities=14% Similarity=0.065 Sum_probs=133.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeE--EecCCCCEEEEEecCCeEEEEecCCcceee
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDI 1188 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~--sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~ 1188 (1349)
++.|.++.|..++..++.+..+|.|.+-|..+...... ....+.|. ++++++..++.++.++++.+-+-.-.+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~- 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA- 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh-
Confidence 46899999999999999999999999999888766433 33344444 47899999999999888776544211100
Q ss_pred ccCCCeEEEE-eeCCEEEEEeCCCcEEEEEccCCccc--cccccccccc--cCCCCeEEEEEcCCceEEEEEe---cCC-
Q 000694 1189 YRSKGIKSMS-VVQGKIYIGCMDSSIQELAVSNNVER--EIKAPFKSWR--LQSKPINSLVVYKDWLYSASSS---VEG- 1259 (1349)
Q Consensus 1189 ~~~~~V~~La-~~dg~LlSGs~DGsI~IWDl~t~~~~--~i~~~lk~~~--~h~~~I~sL~~~pd~i~las~S---~dD- 1259 (1349)
.... ... .+.++.+.+++...=.-+.-..++.. ....+.+... .....-+++.|-.|+.+.+... ..|
T Consensus 145 --E~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 --EKPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred --cccc-ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 0000 000 13344555444332222211111100 0000000000 0112235688888886665522 234
Q ss_pred CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCC---CcEEEEEeCCCC-eEEEEEc--
Q 000694 1260 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSLQIWLRGT---QQKVGRISAGSK-ITSLLTA-- 1330 (1349)
Q Consensus 1260 gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS---~DGtVrVWDl~t---g~~l~sl~~hs~-VtsLs~d-- 1330 (1349)
+.|++||.+ |.+-.+-....+.-.+++|-|.|..+++-. .|+.|.+|.... |+..-.+.-+.. |..++|+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 789999987 433333222333445899999999998854 566788886432 333323333333 8999996
Q ss_pred CCEEEE---EECCCcEEEee
Q 000694 1331 NDIVLC---GTETGLIKGWI 1347 (1349)
Q Consensus 1331 g~~LaS---GS~DGtIrIWD 1347 (1349)
++.|++ ......|++|-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCceeeeecccccceEEEEE
Confidence 667776 44555599994
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.83 E-value=0.35 Score=56.94 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=108.5
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEccCC-----eEE
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSF---SLFEP----GESLLSGSA----------DKTIGVWQMVQR-----KLE 1146 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsL---afSpd----g~~LaSGS~----------DGtIrVWDl~tg-----~~~ 1146 (1349)
+.|++.|..+.+......+..+ ..|+++ .+..+ ..+++.|+. .|.|.++++... ++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3578888887765444445432 334443 34332 456776643 288999998874 444
Q ss_pred EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccc
Q 000694 1147 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREI 1226 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i 1226 (1349)
........++|.++..-++.++ ++.++.|.+|++.... . ....
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv-~~~g~~l~v~~l~~~~-~-----------------------------------l~~~ 123 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLV-VAVGNKLYVYDLDNSK-T-----------------------------------LLKK 123 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEE-EEETTEEEEEEEETTS-S-----------------------------------EEEE
T ss_pred EEEEEeecCcceEhhhhCCEEE-EeecCEEEEEEccCcc-c-----------------------------------chhh
Confidence 3344455677777765555533 3344666666664221 0 0000
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE--ECCCCCeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCc
Q 000694 1227 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW--RRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASS 1303 (1349)
Q Consensus 1227 ~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIW--Dl~t~~li~tl~-gH~~~VtsLafSPDg~~LaSGS~DGt 1303 (1349)
..+.. ...+.++....+.+.++ .. -+.+.++ +....+....-+ ....+++++.|-+++..++.+..+|.
T Consensus 124 ----~~~~~-~~~i~sl~~~~~~I~vg--D~-~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 124 ----AFYDS-PFYITSLSVFKNYILVG--DA-MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp ----EEE-B-SSSEEEEEEETTEEEEE--ES-SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ----heecc-eEEEEEEeccccEEEEE--Ec-ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 00011 12445555544422222 11 1223333 332221221111 12446788888877779999999999
Q ss_pred EEEEECCC-------Cc----EEEEEeCCCCeEEE---EEcC----------CEEEEEECCCcEEEee
Q 000694 1304 LQIWLRGT-------QQ----KVGRISAGSKITSL---LTAN----------DIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1304 VrVWDl~t-------g~----~l~sl~~hs~VtsL---s~dg----------~~LaSGS~DGtIrIWD 1347 (1349)
+.++.... +. .+..+..+..|+++ +..+ ..++.|+.+|.|.+.-
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 99996542 22 33445556778888 3211 1488999999988543
No 330
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.81 E-value=0.16 Score=57.92 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=112.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCC--eEEEE-EEecCCCC---eEEecCCCCEEEEEecCCeEEEEecCCcceeecc
Q 000694 1117 FSLFEPGESLLSGSADKTIGVWQMVQR--KLELI-EVIATKEP---IRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR 1190 (1349)
Q Consensus 1117 LafSpdg~~LaSGS~DGtIrVWDl~tg--~~~~~-~~~~h~~~---V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~ 1190 (1349)
++.+++|+.||.. .|..|-|-..++. ..+.+ .+.....+ -.++++++..++.+...|+|+++|+.+.......
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 4556778766654 4666776655432 11111 12222222 2247799999999999999999999864322221
Q ss_pred ---------CCCeEEEEeeC--------CEEEEEeCCCcEEEEEccCCcccccccccccc--c-cCCCCeEEEEEcCCce
Q 000694 1191 ---------SKGIKSMSVVQ--------GKIYIGCMDSSIQELAVSNNVEREIKAPFKSW--R-LQSKPINSLVVYKDWL 1250 (1349)
Q Consensus 1191 ---------~~~V~~La~~d--------g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~--~-~h~~~I~sL~~~pd~i 1250 (1349)
...|..+.|.+ -.+++-..+|.++-|-+..+....... ...+ . .....|.++.+||...
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e-~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE-NHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-eEEEEecccCCCceeEEEEcCCCC
Confidence 12266666611 147777888888888764432111110 0111 1 2366889999998865
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE---ecCCCEEEEEeCCCc------EEEEECCCCcEEEEEe-C
Q 000694 1251 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV---VEDFIYLNYNSSASS------LQIWLRGTQQKVGRIS-A 1320 (1349)
Q Consensus 1251 ~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLaf---SPDg~~LaSGS~DGt------VrVWDl~tg~~l~sl~-~ 1320 (1349)
.++.++.....-..+. +....+++-.. .|..+. ++...|+. -.+|.+-+........ .
T Consensus 161 LLlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred EEEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccccC
Confidence 5554443222100000 01111211111 111111 11222221 2334433322221111 1
Q ss_pred CCCe--EEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1321 GSKI--TSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1321 hs~V--tsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
...| .++++||..||+...+|.|.+|+.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 3335 456678999999999999999974
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.80 E-value=0.55 Score=52.83 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=87.8
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE-
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK- 1159 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s- 1159 (1349)
+++.|+..|.+.--|..+|+..- ..+- ...|.+-+.- -|++++.|...|.+.+.+.++|...........-.+..
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~W-e~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIW-EAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEe-ehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 67888888888888888876521 1111 1233332222 47789999999999999999997766555544444444
Q ss_pred ecCCCCEEEEEecCCeEEEEecCCcce--eeccCCCeE---EEEeeCCEEEEEeCCCcEEEEEccCC
Q 000694 1160 LDTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIK---SMSVVQGKIYIGCMDSSIQELAVSNN 1221 (1349)
Q Consensus 1160 Ls~~g~~LvsgS~DgtIkVWDl~~~~~--~~~~~~~V~---~La~~dg~LlSGs~DGsI~IWDl~t~ 1221 (1349)
.++++..++.|+.|++.+..|.....- ...-+.++. +++.-++.++++...|.+.--..++.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 678999999999999999999874221 111111111 11223677777777777665555444
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.073 Score=67.55 Aligned_cols=191 Identities=9% Similarity=0.117 Sum_probs=115.4
Q ss_pred CeEEecCCCCEEEEEecCCeEEEEecCCcceeeccC--CC-eEEEEeeCC--EEEEEeCCC-----cEEEEEccCCcccc
Q 000694 1156 PIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRS--KG-IKSMSVVQG--KIYIGCMDS-----SIQELAVSNNVERE 1225 (1349)
Q Consensus 1156 ~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~--~~-V~~La~~dg--~LlSGs~DG-----sI~IWDl~t~~~~~ 1225 (1349)
.++++++.+..++.|+.+|.|.+++-.-.....+.. +. |..+-..++ .+++.+.|+ .+++||+.......
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 688899999999999999999888765333222211 12 333333333 566644443 59999996542111
Q ss_pred ---cccccccc----ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEecCCCCCeEEEEEecCCCE
Q 000694 1226 ---IKAPFKSW----RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1226 ---i~~~lk~~----~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~----t~~li~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
.....+.+ .....|+.+++++.+-..++.+ -.+|.|..+.-+ .|........-..+|+++++..++..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G-f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG-FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE-ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 10000111 1246788999999986655554 468888888632 12222222233568999999998887
Q ss_pred EEEEeCCCcEEEEECCCCcE-EEEEeCCC-CeEEEEEc-CCE-EEEEECCCcEEEeeC
Q 000694 1295 LNYNSSASSLQIWLRGTQQK-VGRISAGS-KITSLLTA-NDI-VLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1295 LaSGS~DGtVrVWDl~tg~~-l~sl~~hs-~VtsLs~d-g~~-LaSGS~DGtIrIWD~ 1348 (1349)
++-...-..|.+|.+....+ ...+..++ .++|.+++ +.. +++++..+ +.+|++
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~s 242 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDS 242 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce-EEEEcC
Confidence 33333456799998884443 33355544 47888875 333 66665544 777764
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0077 Score=71.12 Aligned_cols=203 Identities=13% Similarity=0.062 Sum_probs=131.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC--CeEEEEEEecCCCCeEEe--cCCCCEEEEEec-CCeEEEEecCCc
Q 000694 1110 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ--RKLELIEVIATKEPIRKL--DTYGKTIFASTQ-GHRMKVIDSSRT 1184 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t--g~~~~~~~~~h~~~V~sL--s~~g~~LvsgS~-DgtIkVWDl~~~ 1184 (1349)
|.+.|+.+.- .-.+++.+++.||.++.|.-.. |.........|...|.++ +.++....+++. |..++++|+..-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 7777776654 3467899999999999997643 222222334555556554 366777778777 999999998731
Q ss_pred ----ceeeccCCCeEEEEe-eCC---EEEE-EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1185 ----LKDIYRSKGIKSMSV-VQG---KIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1185 ----~~~~~~~~~V~~La~-~dg---~LlS-Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
......-.+..++.. ++. .+++ .-.+|.+.++|-........ ..-..|..+|..+...+.+-...+.
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG----YFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc----eecccccCceEEEEeeccccceeec
Confidence 112222223333333 332 3333 34589999998765531111 1124578899999988877655543
Q ss_pred ecCCCeEEEEECCC------CCeEE---------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 000694 1256 SVEGSNIKEWRRHR------KPQIS---------IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 1318 (1349)
Q Consensus 1256 S~dDgtIrIWDl~t------~~li~---------tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl 1318 (1349)
...|.|.-|.... +.+.. .+........++.|+|+|..+.+-+.|..|++++..+|+.++.+
T Consensus 163 -D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 -DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred -cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 3467899999763 11111 11223346789999999999999999999999999998766544
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.71 E-value=0.41 Score=58.31 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=119.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE------------------------------------------EEEE
Q 000694 1113 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE------------------------------------------LIEV 1150 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~------------------------------------------~~~~ 1150 (1349)
.|+.+.|.++..-|+.|...|.|.||.+...+.- ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788899988888898999999988876432110 1111
Q ss_pred ecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeec-----------cCCCeEEEEe------eCC----EEEEEe
Q 000694 1151 IATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIY-----------RSKGIKSMSV------VQG----KIYIGC 1208 (1349)
Q Consensus 1151 ~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~-----------~~~~V~~La~------~dg----~LlSGs 1208 (1349)
....++|+++. .+-.+++.|..+|.+.|.|+++....+. ....++++.| .|+ .+++|+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 22345666665 4567888999999999999986322111 1112777776 233 477899
Q ss_pred CCCcEEEEEccC--CccccccccccccccCCCCeEEEEEc-CC---------------------ceEEEEEecCCCeEEE
Q 000694 1209 MDSSIQELAVSN--NVEREIKAPFKSWRLQSKPINSLVVY-KD---------------------WLYSASSSVEGSNIKE 1264 (1349)
Q Consensus 1209 ~DGsI~IWDl~t--~~~~~i~~~lk~~~~h~~~I~sL~~~-pd---------------------~i~las~S~dDgtIrI 1264 (1349)
..|.+.+|.+-- +....+ ........+..++..+..- .+ ..+++..+ +..+++
T Consensus 163 n~G~v~~fkIlp~~~g~f~v-~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~~irv 239 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSV-QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ESDIRV 239 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEE-EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SSEEEE
T ss_pred CCCCEEEEEEecCCCCceEE-EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--ccceEE
Confidence 999999998852 111111 0001112234444444322 11 12333333 567999
Q ss_pred EECCCCCeEEEecCCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-----e--EEEEEcCC
Q 000694 1265 WRRHRKPQISIAPEKGTTIQAMAVV-----EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-----I--TSLLTAND 1332 (1349)
Q Consensus 1265 WDl~t~~li~tl~gH~~~VtsLafS-----PDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-----V--tsLs~dg~ 1332 (1349)
+...+.+..+..........++.+- ..+..|++-..||.|+++.+...+.+..+.-... + .++..+|+
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 9998776665554332333344452 3577788888999999999999999988775321 1 44455677
Q ss_pred EEEEEE
Q 000694 1333 IVLCGT 1338 (1349)
Q Consensus 1333 ~LaSGS 1338 (1349)
.++-.+
T Consensus 320 i~~~~g 325 (395)
T PF08596_consen 320 IFYWTG 325 (395)
T ss_dssp EEEE-S
T ss_pred EEEEeC
Confidence 555443
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.68 E-value=0.25 Score=58.18 Aligned_cols=230 Identities=13% Similarity=0.146 Sum_probs=130.4
Q ss_pred CCcEEEEECCCCceeEEEEeccC-CC----cEEEEEEcCCCCEEEEE--eCCCeEEEEEccCCeEEEEEEecCCCCeEEe
Q 000694 1088 DGSIKMWDIKKQSAMLVWDVKEH-RK----AVTSFSLFEPGESLLSG--SADKTIGVWQMVQRKLELIEVIATKEPIRKL 1160 (1349)
Q Consensus 1088 DGtIrVWDl~tg~~~~i~tL~gH-ss----~VtsLafSpdg~~LaSG--S~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL 1160 (1349)
.-.|.+||..+-....-..+.+- .. .....+++.||++++.. +--..|.|-|+..++..... ...+...-+
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei--~~PGC~~iy 143 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI--DTPGCWLIY 143 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE--EGTSEEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee--cCCCEEEEE
Confidence 34588999998665333344431 21 22346788899887754 34567889999888775432 222222222
Q ss_pred cCCCCEEEEEecCCeEEEEecCC--cce----eeccC-C-C-eEEEEe--eCCEEEEEeCCCcEEEEEccCCcccccc--
Q 000694 1161 DTYGKTIFASTQGHRMKVIDSSR--TLK----DIYRS-K-G-IKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIK-- 1227 (1349)
Q Consensus 1161 s~~g~~LvsgS~DgtIkVWDl~~--~~~----~~~~~-~-~-V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~-- 1227 (1349)
-..+..+.+.+.||.+.-..++. ... .++.. . . +..-.+ .++.++-.+.+|.|+-.|+.........
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 22345678888899888777762 221 11111 1 1 111122 3456776788888888888765321110
Q ss_pred ------ccccccccCCCCeEEEEEcCCceEEEEEecCC-------CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC-
Q 000694 1228 ------APFKSWRLQSKPINSLVVYKDWLYSASSSVEG-------SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI- 1293 (1349)
Q Consensus 1228 ------~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD-------gtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~- 1293 (1349)
.....|...+..+..+.--.+..|++.-...+ ..|-++|+.+++.+..+.. ..++.++.++.|.+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKP 302 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCc
Confidence 01124555444444333223344544322111 2588889999999888873 34577999998766
Q ss_pred EEEEE-eCCCcEEEEECCCCcEEEEEeC
Q 000694 1294 YLNYN-SSASSLQIWLRGTQQKVGRISA 1320 (1349)
Q Consensus 1294 ~LaSG-S~DGtVrVWDl~tg~~l~sl~~ 1320 (1349)
+|++. ..++.+.|||..+|+.++++..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 55544 4689999999999999999985
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.48 E-value=0.029 Score=68.93 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=61.8
Q ss_pred ccCCCCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1066 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1066 ~gH~~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
-.+...|.|++++ ...++.|+.||+|++||...+... +..+.-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~----~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL----LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee----eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 3567889999996 347999999999999999876432 2234456789999999999999999999999998665
Q ss_pred eE
Q 000694 1144 KL 1145 (1349)
Q Consensus 1144 ~~ 1145 (1349)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 44
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.48 E-value=1.8 Score=53.87 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=63.8
Q ss_pred EEEEECCCCCeE----EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEE
Q 000694 1262 IKEWRRHRKPQI----SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVL 1335 (1349)
Q Consensus 1262 IrIWDl~t~~li----~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~d--g~~La 1335 (1349)
..+|++..++.. ..+ .....|.+++++|+...++.|+.||+|.+||...+..... +..-.++.++|+ |.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEE
Confidence 356666443321 222 3667899999999999999999999999999877643322 333346888885 66999
Q ss_pred EEECCCcEEEeeC
Q 000694 1336 CGTETGLIKGWIP 1348 (1349)
Q Consensus 1336 SGS~DGtIrIWD~ 1348 (1349)
+|+..|.+.+||.
T Consensus 316 V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 316 VGSEQGELQCFDM 328 (545)
T ss_pred EEcCCceEEEEEe
Confidence 9999999999995
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.43 E-value=0.0078 Score=44.57 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=33.4
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000694 1103 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 1139 (1349)
Q Consensus 1103 ~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWD 1139 (1349)
....+.+|...|.++.|++++..+++|+.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566778999999999999999999999999999996
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.43 E-value=0.34 Score=61.23 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=64.5
Q ss_pred CCeEEEEECCC-----CCeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE------------EEEEeC
Q 000694 1259 GSNIKEWRRHR-----KPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQK------------VGRISA 1320 (1349)
Q Consensus 1259 DgtIrIWDl~t-----~~li~tl~gH~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl~tg~~------------l~sl~~ 1320 (1349)
++.|.+.|..+ ...+..+. -....+.+.++|||+++++++ .+++|.|.|+.+.+. +.+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56899999987 34444444 456788999999999877665 689999999988653 444443
Q ss_pred CCCeEEEEEc--CCEEEEEECCCcEEEeeC
Q 000694 1321 GSKITSLLTA--NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1321 hs~VtsLs~d--g~~LaSGS~DGtIrIWD~ 1348 (1349)
+......+|+ |+...+-.-|..|-.||.
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 3333444555 557778888999999984
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.40 E-value=0.051 Score=70.41 Aligned_cols=136 Identities=10% Similarity=0.063 Sum_probs=96.3
Q ss_pred CEEEE-EeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCC-------CCEEEEEecCCeEEEEecCCcce--------e
Q 000694 1124 ESLLS-GSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-------GKTIFASTQGHRMKVIDSSRTLK--------D 1187 (1349)
Q Consensus 1124 ~~LaS-GS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~-------g~~LvsgS~DgtIkVWDl~~~~~--------~ 1187 (1349)
+.|+. ......|.-.|+..|+.+.....+...+|..+.++ +...+.|-.++.+..||.+-... .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 34443 34567888889999998755544555558887653 44667888889999999883211 1
Q ss_pred eccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 000694 1188 IYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 1266 (1349)
Q Consensus 1188 ~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWD 1266 (1349)
........|++. .+|++++|+.+|.||+||-- +... ...+.+-+.||..|.++.+|.++++.+ +..+.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~A-----KT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRA-----KTALPGLGDPIIGIDVTADGKWILATC--KTYLLLID 645 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhh-----hhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEE
Confidence 112233788888 89999999999999999943 3211 113345589999999999999998875 66788887
Q ss_pred C
Q 000694 1267 R 1267 (1349)
Q Consensus 1267 l 1267 (1349)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
No 341
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.34 E-value=1.7 Score=55.48 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=100.0
Q ss_pred CEEEEEEcCC-EEEEEECC-C-----cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe-----EEEE
Q 000694 1071 AVTALIYYKG-LLCSGFSD-G-----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT-----IGVW 1138 (1349)
Q Consensus 1071 ~Vt~Lafsdg-~LaSGS~D-G-----tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGt-----IrVW 1138 (1349)
.-.++++-+| ..++||.| | ++..||..++++..+..+...........+ +|...+.||.||. |-.|
T Consensus 324 ~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 324 CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence 3456666555 58899999 3 577888888776444444333322222222 6777888998864 5556
Q ss_pred EccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEE-EeCC------C
Q 000694 1139 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYI-GCMD------S 1211 (1349)
Q Consensus 1139 Dl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlS-Gs~D------G 1211 (1349)
|..+.+... .......... ..++.-+|++++ ||.| .
T Consensus 402 Dp~~~~W~~--va~m~~~r~~-----------------------------------~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 402 DPVTNKWTP--VAPMLTRRSG-----------------------------------HGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred cCCCCcccc--cCCCCcceee-----------------------------------eEEEEECCEEEEEcCcCCCccccc
Confidence 655544321 1100000000 011113344442 3322 3
Q ss_pred cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEE--ecCCCCCeEEE
Q 000694 1212 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISI--APEKGTTIQAM 1286 (1349)
Q Consensus 1212 sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d---DgtIrIWDl~t~~li~t--l~gH~~~VtsL 1286 (1349)
++..||..++....+.+... ...-..++...+.+|.+++..+ ..+|..||..+.+-... .......+...
T Consensus 445 sve~YDP~t~~W~~~~~M~~-----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNT-----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred eEEEEcCCCCceeecCCccc-----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 56777777765433311111 1112235666677777665422 23478899877544332 22222222112
Q ss_pred EEecCCCEEEEEeCCC-----cEEEEECCCCc
Q 000694 1287 AVVEDFIYLNYNSSAS-----SLQIWLRGTQQ 1313 (1349)
Q Consensus 1287 afSPDg~~LaSGS~DG-----tVrVWDl~tg~ 1313 (1349)
.-++...+.||.|| +|..||..+.+
T Consensus 520 --~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 520 --VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred --EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 23677778888775 46667655544
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.29 E-value=0.41 Score=60.50 Aligned_cols=183 Identities=10% Similarity=-0.035 Sum_probs=107.3
Q ss_pred cCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCC----eEEEEecCCcceeeccC-CC
Q 000694 1120 FEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH----RMKVIDSSRTLKDIYRS-KG 1193 (1349)
Q Consensus 1120 Spdg~~La-SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~Dg----tIkVWDl~~~~~~~~~~-~~ 1193 (1349)
.|||+.+. +.-..+.+.+.|..+.+.......+..-....+.+++.++++.+.+. ++..-+........... ..
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 34555443 23334667777777766554444443333445677888887775322 23333222110000000 00
Q ss_pred eEEEEeeCCEEEEEeCCCcEEEEEccC----CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1194 IKSMSVVQGKIYIGCMDSSIQELAVSN----NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1194 V~~La~~dg~LlSGs~DGsI~IWDl~t----~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
+. -...+|+...- .++.|.++|.++ +... ...-.-+.....+.++||+.++...+.-++++.+.|+.+
T Consensus 281 ie-a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v------~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 281 IE-EAVKAGKFKTI-GGSKVPVVDGRKAANAGSAL------TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred HH-HhhhCCCEEEE-CCCEEEEEECCccccCCcce------EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 00134543332 367899999987 2111 111223466778999999999998877788999999977
Q ss_pred CC------------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000694 1270 KP------------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1270 ~~------------li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~t 1311 (1349)
.+ ++....- +......+|.++|....|-.-|..|-.|++.+
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 44 2333332 33455678999999888888999999999876
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.26 E-value=0.0093 Score=44.15 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=33.6
Q ss_pred CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1271 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1271 ~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
++...+..|...|.++.|++++.++++|+.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677888999999999999999999999999996
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.21 E-value=0.53 Score=58.12 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=105.2
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEE-ecCCcc
Q 000694 1107 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVI-DSSRTL 1185 (1349)
Q Consensus 1107 L~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVW-Dl~~~~ 1185 (1349)
+....-....+.++|+|+.++.++ ||...++.....+-. .... +.-..|.. .+.+++...+++|.++ +.....
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k--~~G~--g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK--AFGS--GLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE--EEEE---SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc--ccCc--eeEEEEec-CccEEEEECCCeEEEEEcCcccc
Confidence 333445678999999999988855 777788874333321 1111 11122444 5567777778888885 443222
Q ss_pred -eeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEE
Q 000694 1186 -KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE 1264 (1349)
Q Consensus 1186 -~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrI 1264 (1349)
..+.....+..+-. |.++....++.|.+||..+++... ..+-.+|..+.|++++.+++-.+ +..+.+
T Consensus 102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~--------~i~v~~vk~V~Ws~~g~~val~t--~~~i~i 169 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIR--------RIDVSAVKYVIWSDDGELVALVT--KDSIYI 169 (443)
T ss_dssp T-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEE--------EESS-E-EEEEE-TTSSEEEEE---S-SEEE
T ss_pred ceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceee--------EEecCCCcEEEEECCCCEEEEEe--CCeEEE
Confidence 12222222333322 777776667799999999885321 11223478999999987777665 446888
Q ss_pred EECCCC-----------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cC
Q 000694 1265 WRRHRK-----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--AN 1331 (1349)
Q Consensus 1265 WDl~t~-----------~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~--dg 1331 (1349)
++.+.. .....+..-...|.+..|..| -++.|.. . .++.+--.....+..+ ..++.=+.. ..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkYl~~Ge~~~i~~l--d~~~yllgy~~~~ 244 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKYLVNGETGIIAHL--DKPLYLLGYLPKE 244 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEEEETTEEEEEEE---SS--EEEEEETTT
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEEEEcCCcceEEEc--CCceEEEEEEccC
Confidence 775433 022333222456777888766 4444432 2 5655322211222222 233333333 34
Q ss_pred CEEEEEECCCcEEEee
Q 000694 1332 DIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1332 ~~LaSGS~DGtIrIWD 1347 (1349)
+.++....|+.|..+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYE 260 (443)
T ss_dssp TEEEEE-TT--EEEEE
T ss_pred CEEEEEECCCCEEEEE
Confidence 7888888888887663
No 345
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.26 Score=60.02 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=129.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEec-----------CCeEEEEecC
Q 000694 1114 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ-----------GHRMKVIDSS 1182 (1349)
Q Consensus 1114 VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~-----------DgtIkVWDl~ 1182 (1349)
=+-+.|||.|.||+|--.-| |.+|--.+-... ..+.+..-....++|+.+++++-+. ...+.|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~-~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRI-QRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHH-HhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 35689999999999988766 789965442221 1222222334468899999888652 2479999998
Q ss_pred C-cceeeccC--CC--eEE-EEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1183 R-TLKDIYRS--KG--IKS-MSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1183 ~-~~~~~~~~--~~--V~~-La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
. .....+.. .+ +.- +.+ .|++.++.-...+|.+|+......... + ...-..|..+.|+|....++-+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~----K--slki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDK----K--SLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecc----c--ccCCccccCcccCCCcceEEEE
Confidence 3 33333222 11 221 223 455655544457899998766421111 0 1123567778888887777766
Q ss_pred ecCCC----eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCc-EEEEEeC
Q 000694 1256 SVEGS----NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS----------SASSLQIWLRGTQQ-KVGRISA 1320 (1349)
Q Consensus 1256 S~dDg----tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS----------~DGtVrVWDl~tg~-~l~sl~~ 1320 (1349)
.+..+ .+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.-- .-..+.|+.++... ++..+.-
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 65443 466777777766666554433333556777888887532 11234455444332 3444444
Q ss_pred CCCeEEEEEc--CCEEEEEEC---CCcEEEe
Q 000694 1321 GSKITSLLTA--NDIVLCGTE---TGLIKGW 1346 (1349)
Q Consensus 1321 hs~VtsLs~d--g~~LaSGS~---DGtIrIW 1346 (1349)
...|..++|. |+.+++-+. ..++.+|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEE
Confidence 5567888885 554443322 2345555
No 346
>PHA02713 hypothetical protein; Provisional
Probab=95.95 E-value=0.32 Score=61.86 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=112.4
Q ss_pred cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCeEEEEEEecCCCC---eEEe
Q 000694 1090 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKLELIEVIATKEP---IRKL 1160 (1349)
Q Consensus 1090 tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D------GtIrVWDl~tg~~~~~~~~~h~~~---V~sL 1160 (1349)
.+..||..++++..+..+...... .+++. -++...+.||.+ ..+..||..++... .......+ ....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~--~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV--ELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe--eCCCCcchhhceeEE
Confidence 567788888765444333322111 12222 256667777754 34778888777643 22211111 1122
Q ss_pred cCCCCEEEEEecCC-----eEEEEecCCcceee----ccCCCeEEEEeeCCEEEE-EeCCC-------------------
Q 000694 1161 DTYGKTIFASTQGH-----RMKVIDSSRTLKDI----YRSKGIKSMSVVQGKIYI-GCMDS------------------- 1211 (1349)
Q Consensus 1161 s~~g~~LvsgS~Dg-----tIkVWDl~~~~~~~----~~~~~V~~La~~dg~LlS-Gs~DG------------------- 1211 (1349)
..++...+.||.++ .+..||.....-.. .....-.++..-+|++++ ||.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 34555666676653 47788876321111 111111223335777775 65542
Q ss_pred ----cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCC-CC--eEEEecCCC
Q 000694 1212 ----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHR-KP--QISIAPEKG 1280 (1349)
Q Consensus 1212 ----sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD----gtIrIWDl~t-~~--li~tl~gH~ 1280 (1349)
.+..||..+.+...+.+. . ....-.+++...+.+|++++..+. ..+..||..+ .+ .+..+....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m-~----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNF-W----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccceEEEECCCCCeEeecCCC-C----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 477788877654322111 0 111112455666777777543211 2467899876 33 233333222
Q ss_pred CCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEe
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSAS--SLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DG--tVrVWDl~tg~~l~sl~ 1319 (1349)
.....+ .-+|...++||.|| .+..||..+.+......
T Consensus 504 ~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 504 SALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ccceeE--EECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 222222 23788889999888 77778877766554333
No 347
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.90 E-value=0.45 Score=60.71 Aligned_cols=211 Identities=11% Similarity=0.101 Sum_probs=111.6
Q ss_pred CeEEEEEccCCeEEEEEEecCCCCeEE-ecCCCCEEEEEecC-C-----eEEEEecCCcc----eeeccCCCeEEEEeeC
Q 000694 1133 KTIGVWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQG-H-----RMKVIDSSRTL----KDIYRSKGIKSMSVVQ 1201 (1349)
Q Consensus 1133 GtIrVWDl~tg~~~~~~~~~h~~~V~s-Ls~~g~~LvsgS~D-g-----tIkVWDl~~~~----~~~~~~~~V~~La~~d 1201 (1349)
..+..+|..++.............-.+ ...++...++|+.| | ++..||..... ........-..++.-+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 467788887775432222222222222 33556677788888 3 46677766322 1111111223344467
Q ss_pred CEEEE-EeCCC-----cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCCCC
Q 000694 1202 GKIYI-GCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHRKP 1271 (1349)
Q Consensus 1202 g~LlS-Gs~DG-----sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD----gtIrIWDl~t~~ 1271 (1349)
|.+++ ||.|| +|-.||..+.+...+.+. . ....-..++...+.+|++++.... .++..||..++.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m----~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM----L-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCC----C-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 77775 88776 467777777643322111 0 112223445556666666543211 368899987754
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCc-----EEEEECCCCcEEEE--EeCC-CCeEEEEEcCCEEEEEECCCc-
Q 000694 1272 QISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-----LQIWLRGTQQKVGR--ISAG-SKITSLLTANDIVLCGTETGL- 1342 (1349)
Q Consensus 1272 li~tl~gH~~~VtsLafSPDg~~LaSGS~DGt-----VrVWDl~tg~~l~s--l~~h-s~VtsLs~dg~~LaSGS~DGt- 1342 (1349)
-...-.-.......-.-.-++...+.||.||. |..||..+.+.... +... +.+.....++...++|+.||.
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 43222211111111122346778888887763 77788776655433 2222 224455677888899999874
Q ss_pred ----EEEeeC
Q 000694 1343 ----IKGWIP 1348 (1349)
Q Consensus 1343 ----IrIWD~ 1348 (1349)
|..|||
T Consensus 536 ~l~~ve~ydp 545 (571)
T KOG4441|consen 536 NLNTVECYDP 545 (571)
T ss_pred ccceeEEcCC
Confidence 555554
No 348
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.3 Score=59.52 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=90.6
Q ss_pred CCCEEE-EEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCC-------CEEEEEecCCeEEEEecCCcc--------
Q 000694 1122 PGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG-------KTIFASTQGHRMKVIDSSRTL-------- 1185 (1349)
Q Consensus 1122 dg~~La-SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g-------~~LvsgS~DgtIkVWDl~~~~-------- 1185 (1349)
+.+.|+ +++.-..+.--|++.|+.+-.-..+..-++..+.++. ..-+.|-.++.|.-||.+-..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344433 5666667788899999876433333332444444332 234556677888889987211
Q ss_pred -eeeccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 000694 1186 -KDIYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 1263 (1349)
Q Consensus 1186 -~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIr 1263 (1349)
..+.......|++. .+|++++|+.+|.|++||- .+...+ ..+.+-+.+|..+....++.++++.. +..+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-----TAlPgLG~~I~hVdvtadGKwil~Tc--~tyLl 495 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-----TALPGLGDAIKHVDVTADGKWILATC--KTYLL 495 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-----hcccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence 12222334778877 8999999999999999998 332111 13456689999999999999988764 66777
Q ss_pred EEEC
Q 000694 1264 EWRR 1267 (1349)
Q Consensus 1264 IWDl 1267 (1349)
+-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 7664
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.87 E-value=0.0051 Score=75.30 Aligned_cols=199 Identities=13% Similarity=0.144 Sum_probs=121.6
Q ss_pred CCCEEEEEEc---C-CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEe----CCCeEEEEE
Q 000694 1069 SGAVTALIYY---K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGS----ADKTIGVWQ 1139 (1349)
Q Consensus 1069 ~~~Vt~Lafs---d-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS----~DGtIrVWD 1139 (1349)
...+.|+++. + ..++.|..+|.|-+-..+...-.-.....+|..+.++++|++-+ ..|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3467788873 2 25999999999999888754322223457788999999999854 4555552 356799999
Q ss_pred ccCCe--EE--EEEEe--cCCCCeEEecCCCCEEEEEecCCeEEEEecCCccee--eccCCCeEEEEe-e-CCEEEEEeC
Q 000694 1140 MVQRK--LE--LIEVI--ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IYRSKGIKSMSV-V-QGKIYIGCM 1209 (1349)
Q Consensus 1140 l~tg~--~~--~~~~~--~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~--~~~~~~V~~La~-~-dg~LlSGs~ 1209 (1349)
+.++- .. ..+.. .......|+..+...+.+|.....+.++|++..... ....+.+..+.+ | .+..++...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 98761 11 01111 111223344466778888888889999999843322 222234666666 4 445566666
Q ss_pred CCcEEEEEc-cCCccccccccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECC
Q 000694 1210 DSSIQELAV-SNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRH 1268 (1349)
Q Consensus 1210 DGsI~IWDl-~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i-~las~S~dDgtIrIWDl~ 1268 (1349)
||.|.+||. +.-+ ..++...+.-+.....+..+++.|... .+++...+.++|+.+|+.
T Consensus 216 dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999994 3221 111111111112233578888887642 233445567899999974
No 350
>PHA02713 hypothetical protein; Provisional
Probab=95.84 E-value=0.34 Score=61.62 Aligned_cols=210 Identities=11% Similarity=0.120 Sum_probs=102.4
Q ss_pred eEEEEEccCCeEEEEEEecCCC-CeEEecCCCCEEEEEecC------CeEEEEecCCcceee----ccCCCeEEEEeeCC
Q 000694 1134 TIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQG------HRMKVIDSSRTLKDI----YRSKGIKSMSVVQG 1202 (1349)
Q Consensus 1134 tIrVWDl~tg~~~~~~~~~h~~-~V~sLs~~g~~LvsgS~D------gtIkVWDl~~~~~~~----~~~~~V~~La~~dg 1202 (1349)
.+..||..+++........... .......++...+.||.+ ..+..||.....-.. .....-.+++.-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 4566777766543211111110 111122345555666643 246677765321111 11111223344677
Q ss_pred EEEE-EeCCC-----cEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecC------------------
Q 000694 1203 KIYI-GCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE------------------ 1258 (1349)
Q Consensus 1203 ~LlS-Gs~DG-----sI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~d------------------ 1258 (1349)
++++ ||.++ ++..||..+.+...+.+. . ....-.++....+.++++++...
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p----~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-P----IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCC-C----cccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 7775 66553 478899887754332111 0 01111223344566666654211
Q ss_pred ---CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCC-C--cEEEEEeCCCC-eE
Q 000694 1259 ---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQIWLRGT-Q--QKVGRISAGSK-IT 1325 (1349)
Q Consensus 1259 ---DgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~D------GtVrVWDl~t-g--~~l~sl~~hs~-Vt 1325 (1349)
-+.+..||..+.+-...-.-.......-...-+|+..+.||.+ ..|..||..+ . +.+..+..... ..
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 1357888887653322111111111112223456766777654 2467888776 3 34444433222 44
Q ss_pred EEEEcCCEEEEEECCC--cEEEeeC
Q 000694 1326 SLLTANDIVLCGTETG--LIKGWIP 1348 (1349)
Q Consensus 1326 sLs~dg~~LaSGS~DG--tIrIWD~ 1348 (1349)
....+|+..++||.|| ++..||+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCc
Confidence 5556899999999998 5666664
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.70 E-value=0.79 Score=56.64 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=88.3
Q ss_pred ecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-eCCEEEEEeCCCcEEEE-EccCCccccccccccccccCC
Q 000694 1160 LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQEL-AVSNNVEREIKAPFKSWRLQS 1237 (1349)
Q Consensus 1160 Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IW-Dl~t~~~~~i~~~lk~~~~h~ 1237 (1349)
..|++..+++ ..||...++....... ...+.+ ....| ..+.+++-...++|.++ ++.......+ ...
T Consensus 40 ~npngr~v~V-~g~geY~iyt~~~~r~-k~~G~g-~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i-------~~~- 108 (443)
T PF04053_consen 40 HNPNGRFVLV-CGDGEYEIYTALAWRN-KAFGSG-LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI-------KLP- 108 (443)
T ss_dssp E-TTSSEEEE-EETTEEEEEETTTTEE-EEEEE--SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------------S-
T ss_pred ECCCCCEEEE-EcCCEEEEEEccCCcc-cccCce-eEEEEecCccEEEEECCCeEEEEEcCccccceEE-------cCC-
Confidence 4577777777 6677777777432111 112222 33445 67888877778889986 3322221122 111
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----
Q 000694 1238 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----- 1312 (1349)
Q Consensus 1238 ~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg----- 1312 (1349)
..+..+-. +....+.+ ++.|.+||..+++.+..+... +|..+.|+++|.+++-.+.| .+.|++....
T Consensus 109 ~~~~~If~--G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~ 180 (443)
T PF04053_consen 109 FSVEKIFG--GNLLGVKS---SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAI 180 (443)
T ss_dssp S-EEEEE---SSSEEEEE---TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHB
T ss_pred cccceEEc--CcEEEEEC---CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccc
Confidence 12333333 44444432 458999999999999998733 48999999999999998855 6788764433
Q ss_pred ------cEEEEEeC-CCCeEEEEEcCCEEEEEECCCcEEE
Q 000694 1313 ------QKVGRISA-GSKITSLLTANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1313 ------~~l~sl~~-hs~VtsLs~dg~~LaSGS~DGtIrI 1345 (1349)
..+..+.. ..+|.+..|+++.++-.+.. +++.
T Consensus 181 ~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY 219 (443)
T PF04053_consen 181 PEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY 219 (443)
T ss_dssp TTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE
T ss_pred cccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE
Confidence 13333433 66788888988866655554 4543
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.65 E-value=3.3 Score=47.32 Aligned_cols=213 Identities=11% Similarity=0.113 Sum_probs=119.9
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc--ce----------
Q 000694 1121 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT--LK---------- 1186 (1349)
Q Consensus 1121 pdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~--~~---------- 1186 (1349)
..++.|+.|+.+| +.+++........ . ......|..+. +.-+.+++.+ |+.+.++++..- ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~-~-i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT-R-ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce-e-EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678899999998 8899983222111 1 11222376654 4555665554 499999998721 11
Q ss_pred -----eeccCCCeEEEE-e---eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEec
Q 000694 1187 -----DIYRSKGIKSMS-V---VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 1257 (1349)
Q Consensus 1187 -----~~~~~~~V~~La-~---~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~ 1257 (1349)
.....+++..++ . .++..++......|.+|.......... ...+.+.. ...+.++.+.++.+.++.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~l-p~~~~~i~~~~~~i~v~~--- 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISL-PDPPSSIAFLGNKICVGT--- 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEc-CCCcEEEEEeCCEEEEEe---
Confidence 122233455555 1 334555556666898888876421100 01112222 367788888866554443
Q ss_pred CCCeEEEEECCCCCeEEEecCCC------------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEeCCCC
Q 000694 1258 EGSNIKEWRRHRKPQISIAPEKG------------TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RISAGSK 1323 (1349)
Q Consensus 1258 dDgtIrIWDl~t~~li~tl~gH~------------~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~--sl~~hs~ 1323 (1349)
.+...+.|+.++.....+.... .++..+. -+++.+|++. |. +-+|=-..|++.+ .+.-...
T Consensus 156 -~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 156 -SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred -CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cc-eEEEEcCCCCcCcccEEEcCCc
Confidence 3358888988766554442111 1233333 3456777653 32 4444333454443 4444556
Q ss_pred eEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1324 ITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1324 VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+.++++...+|+..+.++ |.||+.
T Consensus 231 p~~~~~~~pyli~~~~~~-iEV~~~ 254 (275)
T PF00780_consen 231 PQSVAYSSPYLIAFSSNS-IEVRSL 254 (275)
T ss_pred hhEEEEECCEEEEECCCE-EEEEEC
Confidence 778888777888777655 999975
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.14 Score=64.52 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCC
Q 000694 1087 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYG 1164 (1349)
Q Consensus 1087 ~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g 1164 (1349)
..|+|.||- ++|++..-.+.+-| +++++|+|..-.|+.|-.-|.+.+|...+.+.. .....|..+|.. |+++|
T Consensus 39 r~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G 113 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDG 113 (1416)
T ss_pred CCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCC
Confidence 357787774 33443222222323 567999999988999999999999998776543 344567777765 67999
Q ss_pred CEEEEEecCCeEEEEecC
Q 000694 1165 KTIFASTQGHRMKVIDSS 1182 (1349)
Q Consensus 1165 ~~LvsgS~DgtIkVWDl~ 1182 (1349)
+.++++..-|.+.+|...
T Consensus 114 ~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 114 TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CeEEEcCCCceeEEEEee
Confidence 999999999999999877
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.61 E-value=8.3 Score=47.39 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=97.1
Q ss_pred cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec--CCCCe-EE----ecC
Q 000694 1090 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA--TKEPI-RK----LDT 1162 (1349)
Q Consensus 1090 tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~--h~~~V-~s----Ls~ 1162 (1349)
.|.||+..+.. +.++.--.+.|.++.|+.+. .|+.-..||+++++|+.. +.. ..... ....| .+ ...
T Consensus 62 ~I~iys~sG~l---l~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G-~~~-fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKL---LSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG-EFQ-FSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCE---eEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCC-cee-echhhhccccCccccccccccc
Confidence 49999988754 33332223899999998754 566677899999999863 331 11110 11111 11 122
Q ss_pred CCCEEEEEecCCeEEEEec-CCcce--ee---cc----CCC---eEEE-Ee--eCCEEEEEeCCCcEEEEEccCCccccc
Q 000694 1163 YGKTIFASTQGHRMKVIDS-SRTLK--DI---YR----SKG---IKSM-SV--VQGKIYIGCMDSSIQELAVSNNVEREI 1226 (1349)
Q Consensus 1163 ~g~~LvsgS~DgtIkVWDl-~~~~~--~~---~~----~~~---V~~L-a~--~dg~LlSGs~DGsI~IWDl~t~~~~~i 1226 (1349)
.++.++..+.++.+.+.+- ..... .. .. .+. ...+ .+ .....+....++.+.+.+-.....
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 2233444455555544322 21100 00 00 000 1111 11 222233344455555443322110
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCeEEEEEecCCC
Q 000694 1227 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFI 1293 (1349)
Q Consensus 1227 ~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH-~~~VtsLafSPDg~ 1293 (1349)
....+++..++++|++.+++... ++|.+.+.+..-.+....+... ......+.|..+..
T Consensus 213 -------i~~~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 -------IDSDGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -------ccCCCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 01236799999999999888776 4678888887666555555433 34566777765543
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.60 E-value=0.43 Score=58.05 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=99.8
Q ss_pred CCCCEEEEEEcC-CEEEEEECCCcEEEEECCCCceeEEEEecc------CCCcEEEEEEc-----CCC---CEEEEEeCC
Q 000694 1068 CSGAVTALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKE------HRKAVTSFSLF-----EPG---ESLLSGSAD 1132 (1349)
Q Consensus 1068 H~~~Vt~Lafsd-g~LaSGS~DGtIrVWDl~tg~~~~i~tL~g------Hss~VtsLafS-----pdg---~~LaSGS~D 1132 (1349)
..++|++++.+| |++|.|..+|.+.|.|++.........+.. ....|+++.|. .|+ -.++.|...
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 379999999975 899999999999999998866533333333 33578899886 233 368889999
Q ss_pred CeEEEEEcc--C-CeEEEEEEe---cCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe--eCCEE
Q 000694 1133 KTIGVWQMV--Q-RKLELIEVI---ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV--VQGKI 1204 (1349)
Q Consensus 1133 GtIrVWDl~--t-g~~~~~~~~---~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~--~dg~L 1204 (1349)
|.+.+|.+. . +........ .+.++|.. |...|.+...........+..+.- .-..+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~----------------I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILS----------------IIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----E----------------EEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEE----------------EEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 999999774 1 222111110 11122221 111222110000000000000000 11124
Q ss_pred EEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEE-----cCCceEEEEEecCCCeEEEEECCCCCeEEEecCC
Q 000694 1205 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV-----YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK 1279 (1349)
Q Consensus 1205 lSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~-----~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH 1279 (1349)
+..+.+..++++...+.+... +.|+ .......+.+ ...+..+++. ..+|.+++|.+..-+.+....-+
T Consensus 229 vVvvSe~~irv~~~~~~k~~~-----K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l-~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAH-----KSFD-DPFLCSSASVVPTISRNGGYCLVCL-FNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEE-----EE-S-S-EEEEEEEEEEEE-EEEEEEEEEE-ETTSEEEEEETTT--EEEEEE-S
T ss_pred EEEEcccceEEEeCCCCcccc-----eeec-cccccceEEEEeecccCCceEEEEE-ECCCcEEEEECCCchHhhcccCC
Confidence 455567889998887654221 2331 1111222222 1233333333 36889999999887777665543
Q ss_pred C----CCeEEEEEecCCCEEEEEeC
Q 000694 1280 G----TTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1280 ~----~~VtsLafSPDg~~LaSGS~ 1300 (1349)
. ..+....++++|..++-.|.
T Consensus 302 ~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 302 PPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp S---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CccccccccccEECCCCCEEEEeCc
Confidence 2 23455677888887766553
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.40 E-value=4.1 Score=51.63 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=45.8
Q ss_pred EEEcCCEEEEEECCCcEEEEECCCCceeEEEEec--cCCC--cEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCe
Q 000694 1075 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRK--AVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1075 Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~--gHss--~VtsLafSpdg~~LaSGS------~DGtIrVWDl~tg~ 1144 (1349)
+++.++.++.++.||.+.-.|..+|+. +.... .+.. .+++--.--++ .++.++ .+|.|..+|..+|+
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~--~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKV--VWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCE--EeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 456678889999999999999999886 33332 1211 12111000134 455443 27899999999998
Q ss_pred EEEEE
Q 000694 1145 LELIE 1149 (1349)
Q Consensus 1145 ~~~~~ 1149 (1349)
.+...
T Consensus 193 ~lW~~ 197 (527)
T TIGR03075 193 LVWRR 197 (527)
T ss_pred eeEec
Confidence 77543
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.25 E-value=2.5 Score=49.83 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=107.6
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCcce-eecc---
Q 000694 1118 SLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLK-DIYR--- 1190 (1349)
Q Consensus 1118 afSpdg~-~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~~~-~~~~--- 1190 (1349)
.|.++.. .+.+--..+.|.-||..+|+..... ....+.+.. ..+..++++.. .+.+++...... ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3556655 3445556677777877766543222 222223221 22333333322 233344331111 1111
Q ss_pred -C---CCeEEEEe-eCCEEEEEeCC------------CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEE
Q 000694 1191 -S---KGIKSMSV-VQGKIYIGCMD------------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA 1253 (1349)
Q Consensus 1191 -~---~~V~~La~-~dg~LlSGs~D------------GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~la 1253 (1349)
+ ...+...+ ++|.++.|... |.++.+|. .+... +.+..+-..-+.++|+|++..+.
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~------~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVV------RLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEE------EeecCcEEecCceEECCCCCEEE
Confidence 1 11344455 77777765444 33444443 22211 12222234457899999986555
Q ss_pred EEecCCCeEEEEECCC--C----Ce-EEEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEeCC-CCe
Q 000694 1254 SSSVEGSNIKEWRRHR--K----PQ-ISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-SLQIWLRGTQQKVGRISAG-SKI 1324 (1349)
Q Consensus 1254 s~S~dDgtIrIWDl~t--~----~l-i~tl~gH~~~VtsLafSPDg~~LaSGS~DG-tVrVWDl~tg~~l~sl~~h-s~V 1324 (1349)
..-...+.|.-|+... + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+.+..+... ..+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 4433456787777652 1 11 122222345556777788888876555554 89999988 9999999876 668
Q ss_pred EEEEEcC
Q 000694 1325 TSLLTAN 1331 (1349)
Q Consensus 1325 tsLs~dg 1331 (1349)
++++|-|
T Consensus 258 t~~~FgG 264 (307)
T COG3386 258 TNPAFGG 264 (307)
T ss_pred ccceEeC
Confidence 9999865
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.06 E-value=0.72 Score=46.09 Aligned_cols=97 Identities=25% Similarity=0.378 Sum_probs=66.1
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceee
Q 000694 1114 VTSFSLFE---PG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDI 1188 (1349)
Q Consensus 1114 VtsLafSp---dg-~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~ 1188 (1349)
|++|++.. +| +.|+.||.|..||+|+-. ..+ ......+.|+++. ..+..++.+-.+|+|-+|+-....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~--~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIV--AEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEE--EEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeee
Confidence 56666543 33 569999999999999853 332 2223345566654 456789999999999999876444444
Q ss_pred ccCCCeEEEEe--eCC----EEEEEeCCCcEE
Q 000694 1189 YRSKGIKSMSV--VQG----KIYIGCMDSSIQ 1214 (1349)
Q Consensus 1189 ~~~~~V~~La~--~dg----~LlSGs~DGsI~ 1214 (1349)
...+.+.++.. .++ .+++|-.+|.|-
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44455777776 233 688898888774
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.05 E-value=1.4 Score=55.63 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=67.0
Q ss_pred CCEEEEEEc--CCEEEEEECCCcEEEEECCCCceeEEEEe----ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 000694 1070 GAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV----KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1070 ~~Vt~Lafs--dg~LaSGS~DGtIrVWDl~tg~~~~i~tL----~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg 1143 (1349)
+.+..+.++ +.++|.|+..|.|.|+-+..+.......+ +.|...|++++|++++..+++|...|+|..-.+++.
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~ 156 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR 156 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh
Confidence 334444444 33689999999999998876433222111 347789999999999999999999999998887662
Q ss_pred e---EEEEEEecCCCCeEEecCCCCEEEEEec
Q 000694 1144 K---LELIEVIATKEPIRKLDTYGKTIFASTQ 1172 (1349)
Q Consensus 1144 ~---~~~~~~~~h~~~V~sLs~~g~~LvsgS~ 1172 (1349)
. ............|..++.-...+++++.
T Consensus 157 ~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl 188 (726)
T KOG3621|consen 157 QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTL 188 (726)
T ss_pred hhhccccceeeccCcceEEeecccceehHhhh
Confidence 1 1112223345566666654455544433
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.22 Score=64.80 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=76.6
Q ss_pred CCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 000694 1069 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~ 1148 (1349)
...+.+.+.-.+.++.|++.|.|-..|..+.-. ..+.=..-.++|++++|+.+|..++.|-.+|.|.+||+..++....
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 445666666677899999999999988876311 1122222457999999999999999999999999999998876543
Q ss_pred EEecCCCCeEE-----ecCCCCEEEEEecCCeEEEEec
Q 000694 1149 EVIATKEPIRK-----LDTYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1149 ~~~~h~~~V~s-----Ls~~g~~LvsgS~DgtIkVWDl 1181 (1349)
...+..+.+. ....+..++++...|. +|..
T Consensus 168 -i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 -ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3344444443 2244556777777776 5543
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.97 E-value=0.81 Score=53.84 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=88.5
Q ss_pred CcEEEEECCCC-----ceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-EEEEEEecCCCCeEEecC
Q 000694 1089 GSIKMWDIKKQ-----SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LELIEVIATKEPIRKLDT 1162 (1349)
Q Consensus 1089 GtIrVWDl~tg-----~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~-~~~~~~~~h~~~V~sLs~ 1162 (1349)
|.|.++++... +...+.... ..++|++++-- +| +|+.|. ++.|.+|++...+ +...........+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 89999999884 444444443 57899999876 34 455444 5889999999888 766666666668888888
Q ss_pred CCCEEEEEecCCeEEEEecCC--c-ceeecc---CCCeEEEEe-eCC-EEEEEeCCCcEEEEEccC
Q 000694 1163 YGKTIFASTQGHRMKVIDSSR--T-LKDIYR---SKGIKSMSV-VQG-KIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1163 ~g~~LvsgS~DgtIkVWDl~~--~-~~~~~~---~~~V~~La~-~dg-~LlSGs~DGsI~IWDl~t 1220 (1349)
.++.+++|..-..+.++.++. . ...... ...+.++.+ .++ .++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 889999999888888775542 2 222222 223677776 354 777899999999998763
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.91 E-value=9.2 Score=43.83 Aligned_cols=200 Identities=9% Similarity=0.037 Sum_probs=102.3
Q ss_pred EEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec--CCCCEEEEEecCCeEEEEec
Q 000694 1105 WDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1105 ~tL~gHss~VtsLafSpdg~~La-SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl 1181 (1349)
+.+.+-...+.+++|+|+.+.|+ +....+.|...+. +|+.+........+..-.+. .++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 35566666799999999866554 5666777777776 56666544333333334443 34444444445788888887
Q ss_pred CCc-----c---eee----c--cCCCeEEEEe--eCCEEEEEeCCCcEEEEEccC---Cccccccc--cccccccCCCCe
Q 000694 1182 SRT-----L---KDI----Y--RSKGIKSMSV--VQGKIYIGCMDSSIQELAVSN---NVEREIKA--PFKSWRLQSKPI 1240 (1349)
Q Consensus 1182 ~~~-----~---~~~----~--~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t---~~~~~i~~--~lk~~~~h~~~I 1240 (1349)
... . ..+ . .+.++-.+++ .++.++.+....-..+|.+.. .....+.. ....-......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 411 0 111 1 2234888888 457788887777777776654 11110000 000011223457
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC---------CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000694 1241 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG---------TTIQAMAVVEDFIYLNYNSSASSLQIW 1307 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~---------~~VtsLafSPDg~~LaSGS~DGtVrVW 1307 (1349)
..+.++|..-.+..-+...+.+..+| .+|+++..+.-.. ...-+|+|.++|.+.+++ +-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 88899988644444556778899999 5566665544222 257789999999766654 44444443
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.11 Score=64.11 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCEEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1070 GAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1070 ~~Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~Vt-sLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
-.|.-+.|++. .+|++..+|.|.+..++-. .+.++.-|...|+ +++|.|||+.|+.|-.||+|++.|+.+|..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 35677788765 6999999999999988843 3778887777787 9999999999999999999999999988765
Q ss_pred E
Q 000694 1147 L 1147 (1349)
Q Consensus 1147 ~ 1147 (1349)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 4
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.13 Score=63.64 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 000694 1237 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ-AMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vt-sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
+..+..+.|+|..-.++... .+|.+-+...+ .+.+.++.-|+..++ +++|.|||+.||.|-.||+|++-|..+|..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t-~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRT-EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheec-cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 35577788888876666543 46778888877 666777776777777 9999999999999999999999999999988
Q ss_pred EE--EeCCCCeEEEEEcC
Q 000694 1316 GR--ISAGSKITSLLTAN 1331 (1349)
Q Consensus 1316 ~s--l~~hs~VtsLs~dg 1331 (1349)
.. +.....|.++.|+.
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 87 44456688888863
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.62 E-value=0.06 Score=59.53 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=83.0
Q ss_pred EEEEEecCCeEEEEecCCcceeeccCCCeEEE-Ee--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEE
Q 000694 1166 TIFASTQGHRMKVIDSSRTLKDIYRSKGIKSM-SV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 1242 (1349)
Q Consensus 1166 ~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~L-a~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~s 1242 (1349)
.+...+.+|.+.-++++...........+.+. .+ .+..+++|+.+|.|++|+........ .........|.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~-----d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS-----DRVCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHH-----Hhhhccccccee
Confidence 45556677888777776321111111112222 11 56689999999999999886321100 111112223332
Q ss_pred EEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEE--eCCCcEEEEECCCC
Q 000694 1243 LVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYN--SSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1243 L~~~-pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~-~~VtsLafSPDg~~LaSG--S~DGtVrVWDl~tg 1312 (1349)
.-.. .+.. ++..+..+|.|+.|++.-++.+.....|+ .++.....+..+.+++.. |.|..++.|++...
T Consensus 107 ~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 107 GIPNGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccccc-eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222 2222 23333468899999999888888877787 566666666677777777 77788888876543
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.27 E-value=4.6 Score=51.83 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=107.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEEe------CCC--eEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeE-EEE
Q 000694 1109 EHRKAVTSFSLFEPGESLLSGS------ADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRM-KVI 1179 (1349)
Q Consensus 1109 gHss~VtsLafSpdg~~LaSGS------~DG--tIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtI-kVW 1179 (1349)
+....+.+.+++|+|+.++... .|+ .|.+++. .+.. .....+....--.|+++|..+++......+ ++.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3334678999999999877544 244 4444454 2222 222222222223477888888877543221 111
Q ss_pred ecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 000694 1180 DSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 1259 (1349)
Q Consensus 1180 Dl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD 1259 (1349)
+ ....+.+.+.++..+... . .....|..+.++||+..++... +
T Consensus 425 ~--------------------------~~~~gql~~~~vd~ge~~-------~--~~~g~Issl~wSpDG~RiA~i~--~ 467 (591)
T PRK13616 425 R--------------------------DPATGQLARTPVDASAVA-------S--RVPGPISELQLSRDGVRAAMII--G 467 (591)
T ss_pred c--------------------------cCCCceEEEEeccCchhh-------h--ccCCCcCeEEECCCCCEEEEEE--C
Confidence 1 122455655566555321 0 1134689999999988777654 4
Q ss_pred CeEEE---EECCCCCeEEE-----e-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC---CCCeEE
Q 000694 1260 SNIKE---WRRHRKPQISI-----A-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQKVGRISA---GSKITS 1326 (1349)
Q Consensus 1260 gtIrI---WDl~t~~li~t-----l-~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~t-g~~l~sl~~---hs~Vts 1326 (1349)
+.|.+ -....|. ... + .+-...+.++.|.+++.++ .+..++...+|.+.- |.....+.. ...+.+
T Consensus 468 g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~ 545 (591)
T PRK13616 468 GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVA 545 (591)
T ss_pred CEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEE
Confidence 56766 4433443 111 2 2233346889999999865 555555555664322 222222233 234777
Q ss_pred EEEcCCEEEEEECCCcEEE
Q 000694 1327 LLTANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1327 Ls~dg~~LaSGS~DGtIrI 1345 (1349)
++-++..++..+.+|.+.+
T Consensus 546 vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 546 VAASPSTVYVTDARAVLQL 564 (591)
T ss_pred EecCCceEEEEcCCceEEe
Confidence 7766667777777875543
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.18 E-value=3.2 Score=49.71 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=121.3
Q ss_pred CCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCC-----------
Q 000694 1088 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP----------- 1156 (1349)
Q Consensus 1088 DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~----------- 1156 (1349)
.+.+.|||+.+++. ..+......+....|+|+|+.++-.. ++.|.+++..++........+ ...
T Consensus 22 ~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence 35688999999764 33333356788999999999988776 678999998777544322222 111
Q ss_pred --------eEEecCCCCEEEEEecCC-eEEEEecC---CcceeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCc
Q 000694 1157 --------IRKLDTYGKTIFASTQGH-RMKVIDSS---RTLKDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNV 1222 (1349)
Q Consensus 1157 --------V~sLs~~g~~LvsgS~Dg-tIkVWDl~---~~~~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~ 1222 (1349)
..-++++++.++....|. .+..+.+. .... ....+..+.+ ++.... .-.+.++|+.+++
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYPKAGDPNP----RVSLFVVDLASGK 169 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE--BTTS-------EEEEEEEESSSTC
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccCCCCCcCC----ceEEEEEECCCCc
Confidence 112557777777665443 23333221 1100 0111344444 222211 1245668887776
Q ss_pred cccccccccccccCCCCeEEEEEcCCce-EEEEEecCC---CeEEEEECCCCCeEEEecC-CCCC---eEEEEEe-cCCC
Q 000694 1223 EREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEG---SNIKEWRRHRKPQISIAPE-KGTT---IQAMAVV-EDFI 1293 (1349)
Q Consensus 1223 ~~~i~~~lk~~~~h~~~I~sL~~~pd~i-~las~S~dD---gtIrIWDl~t~~li~tl~g-H~~~---VtsLafS-PDg~ 1293 (1349)
...+..+. .+......+..+.|.+++. +.+....-+ ..+.++|..++........ .... -....|. +++.
T Consensus 170 ~~~~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~ 248 (353)
T PF00930_consen 170 TTELDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN 248 (353)
T ss_dssp CCEE---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS
T ss_pred EEEeeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC
Confidence 44332221 1123456788889988876 444443222 2467778777655333321 1222 2345554 5554
Q ss_pred -EEEEEeCCCcEEEE--ECCCCcEEEEEeCCC-CeEEE-EEc--CC-EEEEEEC
Q 000694 1294 -YLNYNSSASSLQIW--LRGTQQKVGRISAGS-KITSL-LTA--ND-IVLCGTE 1339 (1349)
Q Consensus 1294 -~LaSGS~DGtVrVW--Dl~tg~~l~sl~~hs-~VtsL-s~d--g~-~LaSGS~ 1339 (1349)
++.....||--+|| +...+... .+..+. .|+.+ .++ ++ ..++|..
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecC
Confidence 55555577766666 66555533 444333 36554 344 34 3444544
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.13 E-value=19 Score=47.54 Aligned_cols=273 Identities=10% Similarity=0.051 Sum_probs=139.8
Q ss_pred cCCCCEEEEEEc-----CC---EEEEEECCCcEEEEECC-CCceeEEEE-eccC--CCcEEEEEEcCCCCEEEEEeCCCe
Q 000694 1067 KCSGAVTALIYY-----KG---LLCSGFSDGSIKMWDIK-KQSAMLVWD-VKEH--RKAVTSFSLFEPGESLLSGSADKT 1134 (1349)
Q Consensus 1067 gH~~~Vt~Lafs-----dg---~LaSGS~DGtIrVWDl~-tg~~~~i~t-L~gH--ss~VtsLafSpdg~~LaSGS~DGt 1134 (1349)
.-...|.|+.++ ++ +++.|.++..+.+--.. +... ..+. +.+. ...|.-..|-.|..+|.++..||.
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL-ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA 606 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce-eeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence 345789999884 22 68999988876655432 3222 1222 2221 134555566567889999999999
Q ss_pred EEEEEc--cCCeEEEEE--EecCC-CCeEEecCCCCEEEEEecCCeEEEEecCCcceeeccC-CCeEEEEe--eC--CEE
Q 000694 1135 IGVWQM--VQRKLELIE--VIATK-EPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRS-KGIKSMSV--VQ--GKI 1204 (1349)
Q Consensus 1135 IrVWDl--~tg~~~~~~--~~~h~-~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~-~~V~~La~--~d--g~L 1204 (1349)
+.-+.+ .+|...-.. ..+.. -....|+..+..-+.+..|.-..+|.-++......-. +.+..++. .+ +.-
T Consensus 607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCce
Confidence 886654 444432111 11211 1234466555555555566655566655433222111 11222221 11 112
Q ss_pred EEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEec----------CC---CeEEEEECCCCC
Q 000694 1205 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----------EG---SNIKEWRRHRKP 1271 (1349)
Q Consensus 1205 lSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~----------dD---gtIrIWDl~t~~ 1271 (1349)
++-+..+.+++.-+..-+...+ +. -.-+...+.++.++.....+..+. .. ..++++|-++.+
T Consensus 687 l~~~~~~~l~i~tid~iqkl~i----rt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 687 LASANGGALTIGTIDEIQKLHI----RT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred EEEecCCceEEEEecchhhcce----ee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 2233445666665544322211 11 111244455666653333322211 01 247788877766
Q ss_pred eEEEecCCC----CCeEEEEEecC-CCEEEEEeC----------CCcEEEEECCCCcEE---EEEeCCCCeEEEE-EcCC
Q 000694 1272 QISIAPEKG----TTIQAMAVVED-FIYLNYNSS----------ASSLQIWLRGTQQKV---GRISAGSKITSLL-TAND 1332 (1349)
Q Consensus 1272 li~tl~gH~----~~VtsLafSPD-g~~LaSGS~----------DGtVrVWDl~tg~~l---~sl~~hs~VtsLs-~dg~ 1332 (1349)
.+....-.. ..+.++.|..| +.+++.|.. .|.|.||....++.+ ....-.+.|.++. |+|+
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk 841 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK 841 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe
Confidence 554332111 24566668877 677777652 377777765553333 3333355677765 7888
Q ss_pred EEEEEECCCcEEEee
Q 000694 1333 IVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1333 ~LaSGS~DGtIrIWD 1347 (1349)
++|.-+ ..|++|+
T Consensus 842 llA~In--~~vrLye 854 (1096)
T KOG1897|consen 842 LLAGIN--QSVRLYE 854 (1096)
T ss_pred EEEecC--cEEEEEE
Confidence 777654 3566664
No 369
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.86 E-value=1 Score=58.47 Aligned_cols=331 Identities=20% Similarity=0.215 Sum_probs=199.7
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhc----chhhhhhhhhcC--------
Q 000694 576 ILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN----VPEAAILIYLIK-------- 643 (1349)
Q Consensus 576 vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~----~~~aavl~yll~-------- 643 (1349)
=+|..+|.|.-.. ++-+|++-.||. ..+|+-+.+-+..-++=+..|+|.|+.. +.=|.-++|..=
T Consensus 124 ~~d~yiE~lYe~~-~ek~~~~~~il~--La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~f 200 (708)
T PF05804_consen 124 DLDEYIELLYEDI-PEKIRGTSLILQ--LARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQF 200 (708)
T ss_pred HHHHHHHHHhccc-HHHHHHHHHHHH--HhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHH
Confidence 3667777777664 455688766553 6777777777777788888888888553 444444444321
Q ss_pred ------CCh----hhhhhhcchhHHHHH--Hhccc-ccccccccccc---CchhhHHHH--HHHHHh-------cccccc
Q 000694 644 ------PSP----TEIKTLELLPTLVEV--ICTSK-LYKGKLESVRL---TPPAASLMI--IEVLVT-------AFDYAT 698 (1349)
Q Consensus 644 ------p~~----~q~~~~~~~p~~~~v--~~~~~-~~~~~~~~~~~---~p~~aa~~~--l~~ll~-------~~d~~~ 698 (1349)
.+- -++++.|+=..-... ++.+. .....+..-.- .-+..-.++ =+||+- -.-++.
T Consensus 201 H~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed~ 280 (708)
T PF05804_consen 201 HPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAEDP 280 (708)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 111 222233322211111 11110 00000000000 001111111 233332 222333
Q ss_pred chhh-HhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHH
Q 000694 699 NNMH-LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFH 777 (1349)
Q Consensus 699 ~~~~-~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ 777 (1349)
..+. +. -.++++.|+..++.++.|-.+.++..|-+.--. +.|++.+++.--.++++++|.++.....-.|+++|.
T Consensus 281 ~ve~kM~---~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 281 RVELKMV---NKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred HHHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3332 32 356677899999999999888888888754433 337999999999999999999998888889999998
Q ss_pred HHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCCCCcchHHHHHHHHHHHhcCCC
Q 000694 778 EILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEES 857 (1349)
Q Consensus 778 ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~~s~yreeAv~~i~~al~~~~~ 857 (1349)
-| ++-.++-..+-+.|.+..+--|| + .+..+.++-.+|-||=.-++.+.+=.|.+ ++..|++.|-....
T Consensus 357 NL-----Sfd~~~R~~mV~~GlIPkLv~LL---~--d~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 357 NL-----SFDPELRSQMVSLGLIPKLVELL---K--DPNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSE 425 (708)
T ss_pred Hh-----CcCHHHHHHHHHCCCcHHHHHHh---C--CCchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCC
Confidence 77 44445566788889988777777 2 35677788899999988777777777774 99999999888877
Q ss_pred hhHHHHHHHHHHhcCcccccCCchhhH--------HHhhhhcC-CCChhhhhhhccCCcccchhhhhhhhhhhHHhHHHH
Q 000694 858 STMQLLSSFILSNIGGTFSWTGEPYTV--------AWLVKKAG-LNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSI 928 (1349)
Q Consensus 858 ~~~q~~~~~al~~l~g~fs~sG~~~~~--------~~llk~ag-~~~~~~~~~~~~~~~~d~~~~e~~~~~w~~~~a~~l 928 (1349)
+.++....-.+.||. +-+..++ .-|+++|= ..++--..++||+...++..+ ....+|-..+|..+
T Consensus 426 ~~v~~eliaL~iNLa-----~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k-~~f~~~i~~L~~~v 499 (708)
T PF05804_consen 426 EEVQLELIALLINLA-----LNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLK-ELFVDFIGDLAKIV 499 (708)
T ss_pred ccccHHHHHHHHHHh-----cCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHH-HHHHHHHHHHHHHh
Confidence 777776666666662 2222222 12233320 112222245788765554433 34667888888775
Q ss_pred hh
Q 000694 929 IE 930 (1349)
Q Consensus 929 ~~ 930 (1349)
-.
T Consensus 500 ~~ 501 (708)
T PF05804_consen 500 SS 501 (708)
T ss_pred hc
Confidence 44
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.55 E-value=1.2 Score=54.67 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=75.2
Q ss_pred CcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEE--EccCCeEEEEEEecCCCCeEEecCCCC
Q 000694 1089 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVW--QMVQRKLELIEVIATKEPIRKLDTYGK 1165 (1349)
Q Consensus 1089 GtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~La-SGS~DGtIrVW--Dl~tg~~~~~~~~~h~~~V~sLs~~g~ 1165 (1349)
..+.++|+.+++...+..+.++.. .-+|+|||+.|+ +...||...+| |+.++.............-.+++++|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 469999999988766667666654 457999998766 66677766555 666655332111111112334889999
Q ss_pred EEEEEecCC---eEEEEecCCcceeeccCC--CeEEEEe-eCCEEEE--EeCCCc--EEEEEccCC
Q 000694 1166 TIFASTQGH---RMKVIDSSRTLKDIYRSK--GIKSMSV-VQGKIYI--GCMDSS--IQELAVSNN 1221 (1349)
Q Consensus 1166 ~LvsgS~Dg---tIkVWDl~~~~~~~~~~~--~V~~La~-~dg~LlS--Gs~DGs--I~IWDl~t~ 1221 (1349)
.++.++..+ .|.++|.++......... .-..-.+ ++|..++ +..+|. |.+.|+.++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 988776543 466667765433222211 1112223 6776554 322454 555555444
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.53 E-value=2.2 Score=42.76 Aligned_cols=96 Identities=22% Similarity=0.315 Sum_probs=62.2
Q ss_pred EEEEEEc----CC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 000694 1072 VTALIYY----KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 1145 (1349)
Q Consensus 1072 Vt~Lafs----dg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~ 1145 (1349)
|+++++. +| .|++||.|..||+|+-.. .+..+. ..+.|++++-... ..++.+-.+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee
Confidence 6777773 33 599999999999998764 255665 3467888877665 5688889999999997633222
Q ss_pred EEEEEecCCCCeEEec-----CCC-CEEEEEecCCeEE
Q 000694 1146 ELIEVIATKEPIRKLD-----TYG-KTIFASTQGHRMK 1177 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~sLs-----~~g-~~LvsgS~DgtIk 1177 (1349)
. . ..+..+.++. .+| ..+++|-.+|.|-
T Consensus 76 R--i--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 R--I--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e--e--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 1 1222344432 222 2577777777653
No 372
>PHA03098 kelch-like protein; Provisional
Probab=93.52 E-value=2.9 Score=52.81 Aligned_cols=97 Identities=4% Similarity=-0.053 Sum_probs=47.2
Q ss_pred CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC------CeEEEEECCCCCeEEE--ecCCCCC
Q 000694 1211 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG------SNIKEWRRHRKPQISI--APEKGTT 1282 (1349)
Q Consensus 1211 GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD------gtIrIWDl~t~~li~t--l~gH~~~ 1282 (1349)
+.+..||..+++....... . ....-.+.....+.++++++.... ..+.+||..+++-... +......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 480 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPL----P-ISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN 480 (534)
T ss_pred ceEEEEeCCCCeeeecCCC----C-ccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc
Confidence 3577788776643322110 0 011112344455666666543211 2388889876543221 1111111
Q ss_pred eEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcE
Q 000694 1283 IQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQK 1314 (1349)
Q Consensus 1283 VtsLafSPDg~~LaSGS~D-----GtVrVWDl~tg~~ 1314 (1349)
...+ ..++..++.||.+ +.|.+||..+.+.
T Consensus 481 ~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 481 ASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 1122 2367777777754 4677888776543
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.49 E-value=4.2 Score=46.78 Aligned_cols=205 Identities=15% Similarity=0.154 Sum_probs=109.2
Q ss_pred EEEECCCCceeEE------EEeccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCeEEEEEEecCCCCeE--
Q 000694 1092 KMWDIKKQSAMLV------WDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLELIEVIATKEPIR-- 1158 (1349)
Q Consensus 1092 rVWDl~tg~~~~i------~tL~gHss~VtsLafSpdg~~LaSGS~D-----GtIrVWDl~tg~~~~~~~~~h~~~V~-- 1158 (1349)
.++|..+.+.... +.|-||. .|+|||.+|+..-.| |.|-|||.+.+-...-.+..|.-.-.
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev 167 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEV 167 (366)
T ss_pred EEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCccee
Confidence 4677776543111 1234553 599999999976444 78999999754332222223322222
Q ss_pred EecCCCCEEEEEecCCeEEE--------------------Ee-cCCccee--e----ccCCCeEEEEe-eCCEEEEEeC-
Q 000694 1159 KLDTYGKTIFASTQGHRMKV--------------------ID-SSRTLKD--I----YRSKGIKSMSV-VQGKIYIGCM- 1209 (1349)
Q Consensus 1159 sLs~~g~~LvsgS~DgtIkV--------------------WD-l~~~~~~--~----~~~~~V~~La~-~dg~LlSGs~- 1209 (1349)
.+..+|..++.+. |.|.. .| ..+.... . ...-.+..++. .+|.++.||.
T Consensus 168 ~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 168 TLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred EEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 2457777776653 22222 22 1121111 1 11223777777 8888888774
Q ss_pred CCc-----EEEEEccCCccc-cccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 000694 1210 DSS-----IQELAVSNNVER-EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 1283 (1349)
Q Consensus 1210 DGs-----I~IWDl~t~~~~-~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~V 1283 (1349)
.|. --+=-.+.++.. .+..+...|..-...|-+++.+.+.-+++..++.++...+||..+|.++..-.-. ..
T Consensus 246 ~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--da 323 (366)
T COG3490 246 RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DA 323 (366)
T ss_pred eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cc
Confidence 110 000011111111 1111112222234678889999777777778888999999999999887654311 12
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1284 QAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1284 tsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
..++ +...-++..+.+|.+..+.
T Consensus 324 aGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 324 AGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccce--eccCceEEecCCceEEecc
Confidence 2222 3333344455678887763
No 374
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.49 E-value=9.9 Score=50.27 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=42.2
Q ss_pred CeEEEEECCCCCeEEEecCCCCCeEE---------EEEec-CCC---EEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1260 SNIKEWRRHRKPQISIAPEKGTTIQA---------MAVVE-DFI---YLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1260 gtIrIWDl~t~~li~tl~gH~~~Vts---------LafSP-Dg~---~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
+.|.-.|.++|+..-.++.....+++ +.+.. +|+ .++.++.+|.+.+.|.++|+.+....
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 46778888999888766542222222 22222 563 78999999999999999999887643
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.33 E-value=6.1 Score=50.16 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=110.2
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeE----------EecCCCCEEEEEecCCeEEEEecC-Ccceeecc-
Q 000694 1123 GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR----------KLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYR- 1190 (1349)
Q Consensus 1123 g~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~----------sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~- 1190 (1349)
+..++.++.++.|.-.|..+|+.+..........+. .+...+..++.++.|+.+...|.. +...-...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 456777777888999999999877654332111111 122345678888889998888875 22211111
Q ss_pred -----CCCeEEE-EeeCCEEEEEeC------CCcEEEEEccCCcccccc---cc-----------------cccccc---
Q 000694 1191 -----SKGIKSM-SVVQGKIYIGCM------DSSIQELAVSNNVEREIK---AP-----------------FKSWRL--- 1235 (1349)
Q Consensus 1191 -----~~~V~~L-a~~dg~LlSGs~------DGsI~IWDl~t~~~~~i~---~~-----------------lk~~~~--- 1235 (1349)
...+.+- .+.++.++.++. +|.|.-+|..+++..-.. .. ...|..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 0112211 125778877653 689999999988532110 00 001111
Q ss_pred --CCCCe-EEEEEcCC--ceEEEEEe-----c----CC----CeEEEEECCCCCeEEEecCCCCCeEE---------EEE
Q 000694 1236 --QSKPI-NSLVVYKD--WLYSASSS-----V----EG----SNIKEWRRHRKPQISIAPEKGTTIQA---------MAV 1288 (1349)
Q Consensus 1236 --h~~~I-~sL~~~pd--~i~las~S-----~----dD----gtIrIWDl~t~~li~tl~gH~~~Vts---------Laf 1288 (1349)
.+..+ ..+.+.+. .+|+.++. . .| ..|.-.|+++|+..-.++.....++. +.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 01111 12233332 34444422 0 11 16788899999988766643332222 222
Q ss_pred ecCCC---EEEEEeCCCcEEEEECCCCcEE
Q 000694 1289 VEDFI---YLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1289 SPDg~---~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
..+|+ .++.+..+|.+.+.|..+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 24676 7889999999999999999986
No 376
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.19 E-value=0.038 Score=68.01 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=112.3
Q ss_pred CCcEEEEEEcCCC--CEEEEEeCCCeEEEEEccCCeEE-EEEEecCCCCeEEecC---CCCEEEEEe----cCCeEEEEe
Q 000694 1111 RKAVTSFSLFEPG--ESLLSGSADKTIGVWQMVQRKLE-LIEVIATKEPIRKLDT---YGKTIFAST----QGHRMKVID 1180 (1349)
Q Consensus 1111 ss~VtsLafSpdg--~~LaSGS~DGtIrVWDl~tg~~~-~~~~~~h~~~V~sLs~---~g~~LvsgS----~DgtIkVWD 1180 (1349)
...+.|+++.-+. ..++.|..+|.|-+-.++...-. ....+++..+.++++. +.+.+++|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456677765443 35778999999999887653322 3445566677777553 334444442 345799999
Q ss_pred cCCcc---e---eec--cCCCeEEEEe-eCCE-EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcC-Cc
Q 000694 1181 SSRTL---K---DIY--RSKGIKSMSV-VQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DW 1249 (1349)
Q Consensus 1181 l~~~~---~---~~~--~~~~V~~La~-~dg~-LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~p-d~ 1249 (1349)
+.... . .+. ...+..++++ .+.+ +++|.....+.++|++....... ....+.+..+.+.| ..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-------svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-------SVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-------hhhhhhcccceecCCCC
Confidence 98431 1 111 1223555555 4444 55788888999999985432111 11223455566666 45
Q ss_pred eEEEEEecCCCeEEEEEC-CC-CCeEEEecCCC----CCeEEEEEecCC-CEEEEEe-CCCcEEEEECC
Q 000694 1250 LYSASSSVEGSNIKEWRR-HR-KPQISIAPEKG----TTIQAMAVVEDF-IYLNYNS-SASSLQIWLRG 1310 (1349)
Q Consensus 1250 i~las~S~dDgtIrIWDl-~t-~~li~tl~gH~----~~VtsLafSPDg-~~LaSGS-~DGtVrVWDl~ 1310 (1349)
.+.++.. ||.|.+||. .+ ..++.++.... ..+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus 209 nY~cs~~--dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS--DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc--cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5566554 789999993 32 22332222122 248899999943 2344444 55889999754
No 377
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.17 E-value=7.4 Score=48.03 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=101.7
Q ss_pred CCCcEEEEEEcCCCCEEEEE---eCC-CeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEe-cCCe--EEEEecC
Q 000694 1110 HRKAVTSFSLFEPGESLLSG---SAD-KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHR--MKVIDSS 1182 (1349)
Q Consensus 1110 Hss~VtsLafSpdg~~LaSG---S~D-GtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS-~Dgt--IkVWDl~ 1182 (1349)
-...+..-+|+|++..++-. ... ..+.++|+.+++.............-.++++|..++... .||. |.+.|+.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34567777899999875533 222 468999999887654444444455567889998876554 5554 6667776
Q ss_pred Cccee-eccCCCeEEEE-e-eCCE-EE-EEeCCCc--EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEE
Q 000694 1183 RTLKD-IYRSKGIKSMS-V-VQGK-IY-IGCMDSS--IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 1255 (1349)
Q Consensus 1183 ~~~~~-~~~~~~V~~La-~-~dg~-Ll-SGs~DGs--I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~ 1255 (1349)
+.... .....++.+-- + |+|. ++ +.+..|. |.++|........+ .+..... ..-.++|++.+++..
T Consensus 271 ~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-----T~~~~~~--~~p~~SpdG~~i~~~ 343 (425)
T COG0823 271 GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-----TFSGGGN--SNPVWSPDGDKIVFE 343 (425)
T ss_pred CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-----eccCCCC--cCccCCCCCCEEEEE
Confidence 53322 23333344422 2 7765 33 3444554 44455555433222 1122211 145677888777765
Q ss_pred ecCCCe--EEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000694 1256 SVEGSN--IKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1256 S~dDgt--IrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS 1299 (1349)
+..+|. |.+.|+.++.-.+.+. +......-.|.|+|..+...+
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 544444 6666666554344433 233333456677777766544
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=24 Score=42.85 Aligned_cols=205 Identities=12% Similarity=0.081 Sum_probs=128.4
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEec---CCeEEEEecCCc--ce
Q 000694 1113 AVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ---GHRMKVIDSSRT--LK 1186 (1349)
Q Consensus 1113 ~VtsLafSpdg~~-LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~---DgtIkVWDl~~~--~~ 1186 (1349)
.-..+++++.+.. .++...++.|.+.|..+.........+....-..+.++++.++.+.. ++++.+.|.... ..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3457788888875 44555668999999877666554444443334457788888877766 567777776631 22
Q ss_pred eeccCCCeEEEEe-eCCE-EEE-EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEec--CCCe
Q 000694 1187 DIYRSKGIKSMSV-VQGK-IYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV--EGSN 1261 (1349)
Q Consensus 1187 ~~~~~~~V~~La~-~dg~-LlS-Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~--dDgt 1261 (1349)
....+..-..+.+ ++|. ++. -..++.|.++|..+..... ..... ..........+.+.+++.+...... .++.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~-~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS-LVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc-ccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 2222222256666 6665 554 3469999999976654321 00000 0122334456777877664433322 2358
Q ss_pred EEEEECCCCCeEEE-ec-CCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC
Q 000694 1262 IKEWRRHRKPQISI-AP-EKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISA 1320 (1349)
Q Consensus 1262 IrIWDl~t~~li~t-l~-gH~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~~ 1320 (1349)
+...|..++..... .. +.. ....+.++|+|.++.+.. ..+.+.+-|..+......+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 88999888777665 22 222 566788999999988874 448899999888887776653
No 379
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.09 E-value=3.1 Score=52.09 Aligned_cols=179 Identities=18% Similarity=0.252 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhh-hhhcCCChhHHHHHHhhc---ch-hhhhhhhhc-CCChh
Q 000694 574 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIED-IKKKGLRLSDLATALKRN---VP-EAAILIYLI-KPSPT 647 (1349)
Q Consensus 574 ~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~-~~~~d~~~~~~~~~lk~~---~~-~aavl~yll-~p~~~ 647 (1349)
|.++..+.+.+ ++.++-|-+.|+.-+..+...++...+. + ++.+..+|+.. +. -|..+++-+ +|...
T Consensus 113 ~~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~------~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 113 EPLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL------IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH------HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred hHHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH------HHHHhhhccCCcchhHHHHHHHHHHHccCcch
Confidence 45555555554 4788899999999999999988876554 2 44677777654 33 445556666 33332
Q ss_pred hhhhhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHh-ccccccchhhHhhcchhHHHhHHHHHHhcCChHH
Q 000694 648 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT-AFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE 726 (1349)
Q Consensus 648 q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~-~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee 726 (1349)
.. .++|.+.+.|++-- . ...| -.-+.+++.|-. +........ ...++..+...+...+..-
T Consensus 186 ~~---~~~~~~~~~L~~~l---~-----~~~~-~~q~~il~~l~~~~~~~~~~~~------~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 186 YK---SLIPKLIRILCQLL---S-----DPDP-WLQIKILRLLRRYAPMEPEDAD------KNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HT---THHHHHHHHHHHHH---T-----CCSH-HHHHHHHHHHTTSTSSSHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred hh---hhHHHHHHHhhhcc---c-----ccch-HHHHHHHHHHHhcccCChhhhh------HHHHHHHHHHHhhccccHH
Confidence 22 77888888877510 0 0111 222333333321 110000000 0234444544444333333
Q ss_pred HHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccC
Q 000694 727 LISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 783 (1349)
Q Consensus 727 ~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~ 783 (1349)
...++..+..+...+. ....-..++..+|.+.+...|..|+.-|..|..-+
T Consensus 248 ~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 248 VYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 3344443332222111 22233456777888787778888888888887766
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.02 E-value=17 Score=42.00 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=107.0
Q ss_pred EEEeccCC--CcEEEEEEcCCCCEEEEEeCCC--eEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEe-cCCeEEE
Q 000694 1104 VWDVKEHR--KAVTSFSLFEPGESLLSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKV 1178 (1349)
Q Consensus 1104 i~tL~gHs--s~VtsLafSpdg~~LaSGS~DG--tIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS-~DgtIkV 1178 (1349)
+.++. |+ .-...+.|..+|..+-+.|.-| .|+.+|+.+|+..........-.--.+...++.++-.+ .++...+
T Consensus 36 v~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 44443 43 3456788877888777887766 78999999998765444333222223444455666555 5678889
Q ss_pred EecCC--cceeeccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEe
Q 000694 1179 IDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 1256 (1349)
Q Consensus 1179 WDl~~--~~~~~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S 1256 (1349)
||... ....+.....=..++..+..++.......++++|..+.+....... ..-...-..++.+.+..+.++.=.+.
T Consensus 115 yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-~~~g~pv~~LNELE~i~G~IyANVW~ 193 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV-TDNGRPVSNLNELEYINGKIYANVWQ 193 (264)
T ss_dssp EETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE--EETTEE---EEEEEEETTEEEEEETT
T ss_pred EccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE-EECCEECCCcEeEEEEcCEEEEEeCC
Confidence 99873 1111111122344555566777777788899999887643221100 00001123466677776666655543
Q ss_pred cCCCeEEEEECCCCCeEEEecC------------C---CCCeEEEEEecCCCEEEEEe
Q 000694 1257 VEGSNIKEWRRHRKPQISIAPE------------K---GTTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1257 ~dDgtIrIWDl~t~~li~tl~g------------H---~~~VtsLafSPDg~~LaSGS 1299 (1349)
...|...|..+|.++..+.- + ..-.+.+|+.|+...+...|
T Consensus 194 --td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 --TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp --SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred --CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 34788889999988876521 1 24578999998766554443
No 381
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.67 E-value=3.7 Score=53.48 Aligned_cols=335 Identities=17% Similarity=0.187 Sum_probs=186.5
Q ss_pred ccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhcchhh--hhhhhhcCCC-----hhhhhhhcchhHHH
Q 000694 587 SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEA--AILIYLIKPS-----PTEIKTLELLPTLV 659 (1349)
Q Consensus 587 s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~~~~a--avl~yll~p~-----~~q~~~~~~~p~~~ 659 (1349)
-+-++++++++++|..|.... .+..-+.+. --+.-|+++|+++-.|. .++-.|-|.+ -.+|.+...||.|.
T Consensus 260 ~kQeqLlrv~~~lLlNLAed~-~ve~kM~~~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAEDP-RVELKMVNK-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcCh-HHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 457899999999999986555 444444443 34667888898873332 2334455555 47899999999999
Q ss_pred HHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhh
Q 000694 660 EVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQ 739 (1349)
Q Consensus 660 ~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~ 739 (1349)
+.+.++++ ++ ...|+.+|-.| +||..-.. .+...++++.|+..+..++..+ .+..||- .+-
T Consensus 338 kLl~s~~~---~l-------~~~aLrlL~NL--Sfd~~~R~----~mV~~GlIPkLv~LL~d~~~~~--val~iLy-~LS 398 (708)
T PF05804_consen 338 KLLPSENE---DL-------VNVALRLLFNL--SFDPELRS----QMVSLGLIPKLVELLKDPNFRE--VALKILY-NLS 398 (708)
T ss_pred HHhcCCCH---HH-------HHHHHHHHHHh--CcCHHHHH----HHHHCCCcHHHHHHhCCCchHH--HHHHHHH-Hhc
Confidence 99997553 11 13455556666 88765433 2334555666777776554433 3444444 333
Q ss_pred ccCcchhHHHhhcCcchhhHhhhcc-cchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhh
Q 000694 740 FDGQCRKYLSEFTAVAPLACLLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQ 818 (1349)
Q Consensus 740 adg~cr~~ia~~~~~~~~~~ll~~~-~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~ 818 (1349)
.|..||+.++..-....++++|-.+ +......++.++.-|-+ +++.+..+. ++|++.. |+-...+. +-
T Consensus 399 ~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~----~g~gL~~---L~~ra~~~---~D 467 (708)
T PF05804_consen 399 MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMC----EGNGLQS---LMKRALKT---RD 467 (708)
T ss_pred cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHH----hcCcHHH---HHHHHHhc---cc
Confidence 3667999999887788888865554 44444455566655544 444443233 3444432 22222221 12
Q ss_pred HHHHHHHhhhhcccCCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCcccccCCchhhHHHhhhhcCCCChhh
Q 000694 819 LLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWL 898 (1349)
Q Consensus 819 ~~~a~lllqldll~ep~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l~g~fs~sG~~~~~~~llk~ag~~~~~~ 898 (1349)
|+...++==+=.=..|-|. .| .+.|.-|+..+.+++++..+..|-=+|.||. .++ +.-+-+++..+|-.--.
T Consensus 468 ~lLlKlIRNiS~h~~~~k~-~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~----~~~--ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 PLLLKLIRNISQHDGPLKE-LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLT----IPD--LDWAQLLQEYNLLPWLK 539 (708)
T ss_pred HHHHHHHHHHHhcCchHHH-HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc----cCC--cCHHHHHHhCCHHHHHH
Confidence 3322221111000112222 33 4578889999998888888888888888883 222 23344577777665522
Q ss_pred hhhhccCCcccchhhhh----hhhhhhHHhHHHHhhcCc-hhH-HHHHHhhhcCCccccccchhhHHHhhhc
Q 000694 899 QNMIRNFDWLDQSLQDR----GVDSWSSKIAKSIIEIGK-PIY-YALEKGLKSKTKSVCRDSLTTIAWLSFE 964 (1349)
Q Consensus 899 ~~~~~~~~~~d~~~~e~----~~~~w~~~~a~~l~~~~~-~~~-~aLs~~i~s~~~~L~~aCLv~vaWL~~~ 964 (1349)
........ .|+-.-|. +.=.-..+.|..|...|- +.| +.|... ..+.|++--++++.+++-+.
T Consensus 540 ~~L~~g~~-~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k--qeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 540 DLLKPGAS-EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK--QEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHhCCCCC-ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh--CchHHHHHHHHHHHHHHHcC
Confidence 22221111 12111122 122345566666766664 333 333222 33567777676666655443
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=29 Score=42.14 Aligned_cols=211 Identities=10% Similarity=0.166 Sum_probs=129.7
Q ss_pred EEEEEc-C-C-EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEE
Q 000694 1073 TALIYY-K-G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1073 t~Lafs-d-g-~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~---DGtIrVWDl~tg~~~ 1146 (1349)
..++++ . . ..++...++.|.+.|..+.+. .+...- ......++++|+++.++.+.. ++++.+.|..+++..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccce--eeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345553 2 3 355566678999999777554 333321 125678999999988776655 688999998888877
Q ss_pred EEEEecCCCC-eEEecCCCCEEEEEe-cCCeEEEEecCCccee-------eccCCCeEEEEe-eCCE-EEEEe---CCCc
Q 000694 1147 LIEVIATKEP-IRKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-------IYRSKGIKSMSV-VQGK-IYIGC---MDSS 1212 (1349)
Q Consensus 1147 ~~~~~~h~~~-V~sLs~~g~~LvsgS-~DgtIkVWDl~~~~~~-------~~~~~~V~~La~-~dg~-LlSGs---~DGs 1212 (1349)
.. ......+ -..+.++++.++... .++.+.+.|....... ......-..+.+ ++|. ++... .++.
T Consensus 154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 65 3333333 334678999777665 6788999997753332 111222345555 5554 44432 2368
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC---CeEEEEEe
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT---TIQAMAVV 1289 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~---~VtsLafS 1289 (1349)
+...|..++.......+. ... ....+..+|++.+.-......+.+.+.|..+............ .+..+++.
T Consensus 233 v~~id~~~~~v~~~~~~~----~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 233 VLKIDTATGNVTATDLPV----GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred EEEEeCCCceEEEecccc----ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 888888887533211110 111 3455788888877766655567899999988777766553322 35566665
Q ss_pred cCC
Q 000694 1290 EDF 1292 (1349)
Q Consensus 1290 PDg 1292 (1349)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 543
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.51 E-value=0.22 Score=55.20 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=59.6
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCc--c-eeeccCCC-eEEEEe--
Q 000694 1126 LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT--L-KDIYRSKG-IKSMSV-- 1199 (1349)
Q Consensus 1126 LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~--~-~~~~~~~~-V~~La~-- 1199 (1349)
+...+.||.|+-++++..+..+.....+... ..+...+..+++|+.+|.|.+|.++.. . ........ |.++-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 4456778998888886654433222222222 444566788999999999999998721 1 11111222 333322
Q ss_pred eC-CEEEEEeCCCcEEEEEccCCcc
Q 000694 1200 VQ-GKIYIGCMDSSIQELAVSNNVE 1223 (1349)
Q Consensus 1200 ~d-g~LlSGs~DGsI~IWDl~t~~~ 1223 (1349)
.+ ....+++.||.|+.|++.-.+.
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred cccceeEEeccCCceeeeccccCce
Confidence 22 2556799999999999877643
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.48 E-value=41 Score=40.99 Aligned_cols=205 Identities=12% Similarity=0.045 Sum_probs=94.5
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCccee
Q 000694 1113 AVTSFSLFEPGESLLSG-SAD----KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD 1187 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSG-S~D----GtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~ 1187 (1349)
.+....++|+|++++-+ +.. .+++++|+.+|+.+...+......-..|..++..++....+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~-------~---- 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDED-------Q---- 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTT-------T----
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcc-------c----
Confidence 34467899999987743 333 4599999999977643332222111345555555554443221 0
Q ss_pred eccCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCC-CC-eEEEEEcCCceEEEEEecC--C-CeE
Q 000694 1188 IYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS-KP-INSLVVYKDWLYSASSSVE--G-SNI 1262 (1349)
Q Consensus 1188 ~~~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~-~~-I~sL~~~pd~i~las~S~d--D-gtI 1262 (1349)
.+. ..+....|+.|.+.+...... .++.... .. ...+..++++.+++..+.. + ..+
T Consensus 194 -------------~~~--~~~~~~~v~~~~~gt~~~~d~----lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 194 -------------RTS--DSGYPRQVYRHKLGTPQSEDE----LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp -------------SS---CCGCCEEEEEEETTS-GGG-E----EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred -------------ccc--cCCCCcEEEEEECCCChHhCe----eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 000 011133455555555432100 1222221 22 4566677776665543322 2 357
Q ss_pred EEEECCCC----CeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCcE---EEEEeCC-C--CeEEEEE
Q 000694 1263 KEWRRHRK----PQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSLQIWLRGTQQK---VGRISAG-S--KITSLLT 1329 (1349)
Q Consensus 1263 rIWDl~t~----~li~tl~gH~~~VtsLafSPDg~~LaSGS---~DGtVrVWDl~tg~~---l~sl~~h-s--~VtsLs~ 1329 (1349)
.+.|...+ .....+..+...+....-+.++.+++... .++.|.-.++.+... ...+-.+ . .+..+..
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~ 334 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL 334 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE
Confidence 77787664 22333332333333332233444444332 335566667766652 2233322 2 2566666
Q ss_pred cCC-EEEEEECCCc--EEEee
Q 000694 1330 AND-IVLCGTETGL--IKGWI 1347 (1349)
Q Consensus 1330 dg~-~LaSGS~DGt--IrIWD 1347 (1349)
.++ +++..-.+|. |++|+
T Consensus 335 ~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 335 FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp ETTEEEEEEEETTEEEEEEEE
T ss_pred ECCEEEEEEEECCccEEEEEE
Confidence 555 4445555553 44454
No 385
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.24 E-value=1.9 Score=56.39 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 000694 1202 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1281 (1349)
Q Consensus 1202 g~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~ 1281 (1349)
...+.|-.++.+..||.+-.....+....+.+ ..+....+++-..+|..+++. .+|.||+||--..+....+++-+.
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs--~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDGYIAVGS--NKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCceEEEEe--CCCcEEeecccchhhhhcCCCCCC
Confidence 35677888999999999864321111111111 234567788878877666654 588999999655555566778889
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
+|.+|..+.||++|++.+ +..+.+++
T Consensus 620 pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CeeEEEecCCCcEEEEee-cceEEEEE
Confidence 999999999999988766 45566665
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=2.4 Score=52.12 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=92.6
Q ss_pred EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEEccCCeE-EEEEEe--
Q 000694 1082 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-------SLLSGSADKTIGVWQMVQRKL-ELIEVI-- 1151 (1349)
Q Consensus 1082 LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~-------~LaSGS~DGtIrVWDl~tg~~-~~~~~~-- 1151 (1349)
+.+|..-..++--|++.|+. +..++-|.. |+-+.+.|+++ .-+.|=.|..|.-||.+-... ......
T Consensus 349 l~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 56666667788889999886 666665655 77888888764 123466788899999874222 111111
Q ss_pred --cCCCCeEEec-CCCCEEEEEecCCeEEEEecCC-cceeecc--CCCeEEEEe-eCCEEEEEeCCCcEEEEEcc
Q 000694 1152 --ATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR-TLKDIYR--SKGIKSMSV-VQGKIYIGCMDSSIQELAVS 1219 (1349)
Q Consensus 1152 --~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~-~~~~~~~--~~~V~~La~-~dg~LlSGs~DGsI~IWDl~ 1219 (1349)
..+....|+. ....+|++|+.+|.|++||--+ ..+..++ +..|..+.+ .+|+.+.|+.+..+.+.|+.
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2233345554 5667899999999999999753 2333333 345899998 89998888888999888874
No 387
>PHA03098 kelch-like protein; Provisional
Probab=90.89 E-value=7 Score=49.42 Aligned_cols=145 Identities=11% Similarity=0.080 Sum_probs=71.8
Q ss_pred eeCCEEEE-EeCC-----CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECC
Q 000694 1199 VVQGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRH 1268 (1349)
Q Consensus 1199 ~~dg~LlS-Gs~D-----GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD----gtIrIWDl~ 1268 (1349)
..++++++ ||.+ ..+..||..+++....... . ....-.+.....+.++++++...+ +.+..||..
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l----p-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL----I-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc----C-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence 35666664 6654 3577788877643322110 0 111122334456666766553222 368889987
Q ss_pred CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--------cEEEEECCCCcEEEE--EeCC-CCeEEEEEcCCEEEEE
Q 000694 1269 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS--------SLQIWLRGTQQKVGR--ISAG-SKITSLLTANDIVLCG 1337 (1349)
Q Consensus 1269 t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DG--------tVrVWDl~tg~~l~s--l~~h-s~VtsLs~dg~~LaSG 1337 (1349)
+++-...-..........+...++..++.||.++ .+.+||..+.+.... +... .....+..++++++.|
T Consensus 415 t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 415 TNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred CCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 6533221110111111112234566667776432 378888776654322 1111 1123344577787888
Q ss_pred ECC-----CcEEEeeC
Q 000694 1338 TET-----GLIKGWIP 1348 (1349)
Q Consensus 1338 S~D-----GtIrIWD~ 1348 (1349)
|.+ +.|.+||+
T Consensus 495 G~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 495 GDKYEYYINEIEVYDD 510 (534)
T ss_pred CCcCCcccceeEEEeC
Confidence 765 46777765
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.72 E-value=51 Score=40.75 Aligned_cols=258 Identities=6% Similarity=-0.011 Sum_probs=129.7
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEe--ccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEccC--Ce------E
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQMVQ--RK------L 1145 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL--~gHss~VtsLafSp-----dg~~LaSGS~DGtIrVWDl~t--g~------~ 1145 (1349)
.+++||.+|.++||+...+....-..+ ..-..+|..+..-. +...|+. =.-+.+.||.+.. |. .
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEE
Confidence 799999999999999976543211111 12346888887632 1123333 4456777777632 11 1
Q ss_pred EEEEEecCCCCeEE--ec------CC-CCEEEEEecCCeEEEEecCCcce-eeccCCC-eEEEEe--eCCEEEEEeCCCc
Q 000694 1146 ELIEVIATKEPIRK--LD------TY-GKTIFASTQGHRMKVIDSSRTLK-DIYRSKG-IKSMSV--VQGKIYIGCMDSS 1212 (1349)
Q Consensus 1146 ~~~~~~~h~~~V~s--Ls------~~-g~~LvsgS~DgtIkVWDl~~~~~-~~~~~~~-V~~La~--~dg~LlSGs~DGs 1212 (1349)
.......|.-.-.+ +. .. .+.+++-+.||.+.+|+-+.... ....+.- -..+.+ ..+.+++++.+..
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee
Confidence 11222222222111 11 12 46788889999999999875332 1111110 223333 4456778888888
Q ss_pred EEEEEccCCccc---------------cccccccccccC-CCCeEEEEEcC---CceEEEEEecCCCeEEEEECCCCCeE
Q 000694 1213 IQELAVSNNVER---------------EIKAPFKSWRLQ-SKPINSLVVYK---DWLYSASSSVEGSNIKEWRRHRKPQI 1273 (1349)
Q Consensus 1213 I~IWDl~t~~~~---------------~i~~~lk~~~~h-~~~I~sL~~~p---d~i~las~S~dDgtIrIWDl~t~~li 1273 (1349)
+..|....-... .-......|... +..+..+.... ....++.-+ .+++.+.+-+ |.+.
T Consensus 198 l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~~-G~l~ 274 (418)
T PF14727_consen 198 LECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKDN-GSLR 274 (418)
T ss_pred EEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceEEEEcCC-CeEE
Confidence 888876332100 001111123221 34444444332 222222221 4456666653 4443
Q ss_pred EEecCCCCCeEEEEEe----cCC---CEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEE---c--CCEEEEEECC
Q 000694 1274 SIAPEKGTTIQAMAVV----EDF---IYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLLT---A--NDIVLCGTET 1340 (1349)
Q Consensus 1274 ~tl~gH~~~VtsLafS----PDg---~~LaSGS~DGtVrVWDl~tg~~l~sl~~-hs~VtsLs~---d--g~~LaSGS~D 1340 (1349)
...+-...+.....|. .++ ..++.++.++++.||.-.+ .+..-+. +.+| ++.. . ..+|++-+.+
T Consensus 275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~ 351 (418)
T PF14727_consen 275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDE 351 (418)
T ss_pred EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEEEcCC
Confidence 3322111111111121 122 2488888999999996433 3333333 3333 3332 2 4588888889
Q ss_pred CcEEE
Q 000694 1341 GLIKG 1345 (1349)
Q Consensus 1341 GtIrI 1345 (1349)
|.+.+
T Consensus 352 G~L~v 356 (418)
T PF14727_consen 352 GQLSV 356 (418)
T ss_pred CcEEE
Confidence 98865
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.59 E-value=43 Score=39.69 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=107.8
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE-EecCCCCeEE
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE-VIATKEPIRK 1159 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~-~~~h~~~V~s 1159 (1349)
.+.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+++...... ..........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~---~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK---RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce---EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCC
Confidence 366666778888999887653 2333 3344455555455555665543 3567777665542111 1111111111
Q ss_pred -----ecCCCCEEEEEec-----------CCeEEEEecCCcceeeccCC--CeEEEEe-eCCE-EEEE-eCCCcEEEEEc
Q 000694 1160 -----LDTYGKTIFASTQ-----------GHRMKVIDSSRTLKDIYRSK--GIKSMSV-VQGK-IYIG-CMDSSIQELAV 1218 (1349)
Q Consensus 1160 -----Ls~~g~~LvsgS~-----------DgtIkVWDl~~~~~~~~~~~--~V~~La~-~dg~-LlSG-s~DGsI~IWDl 1218 (1349)
+.++|...++... -|.++.+|..+........+ .-+.++| |+++ ++.+ +..+.|.-|++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 3455544443333 12344444333333333331 2467777 7774 4443 44578888877
Q ss_pred cC--CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe-cCCCEE
Q 000694 1219 SN--NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV-EDFIYL 1295 (1349)
Q Consensus 1219 ~t--~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS-PDg~~L 1295 (1349)
.. +..... .............-.++...++.+.++....++.|..|+.. ++.+..+.-+...+++++|- |+.+.|
T Consensus 193 d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 193 DPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred CcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 53 211100 00011111223334455555554443332233489999998 88888888776778888886 455554
Q ss_pred EEEe
Q 000694 1296 NYNS 1299 (1349)
Q Consensus 1296 aSGS 1299 (1349)
...+
T Consensus 271 ~iTs 274 (307)
T COG3386 271 YITS 274 (307)
T ss_pred EEEe
Confidence 4433
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.51 E-value=49 Score=40.26 Aligned_cols=236 Identities=14% Similarity=0.174 Sum_probs=118.6
Q ss_pred EEEEc-CC-EEE-EEECCC----cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-----------eE
Q 000694 1074 ALIYY-KG-LLC-SGFSDG----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK-----------TI 1135 (1349)
Q Consensus 1074 ~Lafs-dg-~La-SGS~DG----tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DG-----------tI 1135 (1349)
...++ +| ++| +-+..| +++++|+.+|+.. ...+... .-..+.|.++++.++....|. .|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44554 44 444 434545 5999999998642 2233321 122399999988776554333 37
Q ss_pred EEEEccCCeEEE-EEEecCCCC--eEE--ecCCCCEEEEEecCC----eEEEEecCCc------ceeeccC-CCe-EEEE
Q 000694 1136 GVWQMVQRKLEL-IEVIATKEP--IRK--LDTYGKTIFASTQGH----RMKVIDSSRT------LKDIYRS-KGI-KSMS 1198 (1349)
Q Consensus 1136 rVWDl~tg~~~~-~~~~~h~~~--V~s--Ls~~g~~LvsgS~Dg----tIkVWDl~~~------~~~~~~~-~~V-~~La 1198 (1349)
..|.+.++.... ..+...... ... .+.+++.++.....+ .+.+.|.... ...+... .++ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 888887754321 122222222 222 457888877554333 4677777642 2222222 222 2333
Q ss_pred eeCCEEEEE----eCCCcEEEEEccCCccccccccccccccCC--CCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCC
Q 000694 1199 VVQGKIYIG----CMDSSIQELAVSNNVEREIKAPFKSWRLQS--KPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKP 1271 (1349)
Q Consensus 1199 ~~dg~LlSG----s~DGsI~IWDl~t~~~~~i~~~lk~~~~h~--~~I~sL~~~pd~i~las~S~dDgtIrIWDl~-t~~ 1271 (1349)
..++.++.- ...+.|...++.+....... ..+-.+. ..+..+....+...+..-......|+++++. +..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 356655542 33567777777765421100 0112222 3566677666665544432222368999998 443
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEE--EEe--CCCcEEEEECCCCcEE
Q 000694 1272 QISIAPEKGTTIQAMAVVEDFIYLN--YNS--SASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1272 li~tl~gH~~~VtsLafSPDg~~La--SGS--~DGtVrVWDl~tg~~l 1315 (1349)
.......-.+.|..+...+++..+. ..| .-+++..||+.+++..
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3333332334466665555554332 222 2367777888887654
No 391
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=42 Score=39.16 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=95.5
Q ss_pred CCCEEEEEEcCCEEEEEECCCcEEEEECCCCc-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-
Q 000694 1069 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE- 1146 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~-~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~- 1146 (1349)
.+-+..+.++.+++..+..+.-++|.|+.+.. +.++..+. -.+--.++.. .|++...+..|.-..+.|+.+.+..
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 34566777788888888888899999998754 22333332 2233444444 6888888886666778888764321
Q ss_pred -EEEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceeec-----cCCCeEEEEeeCCEEEEEeCCCcEEEEEccC
Q 000694 1147 -LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY-----RSKGIKSMSVVQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1147 -~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~~-----~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
.-........-..+.-.|++-..+..|+.+.+-|+.......+ .+.++.++...+++.+..-.+.-+.+-|..+
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~ 242 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSG 242 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCC
Confidence 1111122222244556688888888999999999984332222 2335777777777766655566677777766
Q ss_pred Cc
Q 000694 1221 NV 1222 (1349)
Q Consensus 1221 ~~ 1222 (1349)
.+
T Consensus 243 ~s 244 (370)
T COG5276 243 PS 244 (370)
T ss_pred CC
Confidence 54
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=0.9 Score=59.52 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEE---EEEc--
Q 000694 1258 EGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITS---LLTA-- 1330 (1349)
Q Consensus 1258 dDgtIrIWDl~t~-~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~Vts---Ls~d-- 1330 (1349)
+.|.+-..|..+. .+...-..-+++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..++ ++++ +.+.
T Consensus 107 s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~ 186 (1206)
T KOG2079|consen 107 SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQ 186 (1206)
T ss_pred CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCC
Confidence 4566777776543 1111222235699999999999999999999999999999999998887533 2333 3333
Q ss_pred CCEEEEEECCCcEEEeeC
Q 000694 1331 NDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1331 g~~LaSGS~DGtIrIWD~ 1348 (1349)
+..+.++...|. +|.+
T Consensus 187 nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 187 NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcEEEEccCCCc--eEEE
Confidence 336888888885 6653
No 393
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=13 Score=47.87 Aligned_cols=180 Identities=8% Similarity=0.039 Sum_probs=87.9
Q ss_pred CCeEEEEEccCCeEEEEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeecc------CCC-eEEEEeeCCE
Q 000694 1132 DKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYR------SKG-IKSMSVVQGK 1203 (1349)
Q Consensus 1132 DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~~------~~~-V~~La~~dg~ 1203 (1349)
--.|+|++. +|.......-.|. .+..+. .+...+++...+|++.+|++.+....... ... +.|..|.+|.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 345778877 4554433333343 344444 35567888999999999999865443321 112 3444445554
Q ss_pred EEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECC--CCCeEEEecC
Q 000694 1204 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRH--RKPQISIAPE 1278 (1349)
Q Consensus 1204 LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd---~i~las~S~dDgtIrIWDl~--t~~li~tl~g 1278 (1349)
.+-...+..+.+-+.......+... . ....-+-.+....++ ...++......+ ..++... ..+... +..
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~d--i--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~-~~~ 214 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPD--I--PYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA-LSW 214 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCC--C--CCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc-cCC
Confidence 4433333333333333322221100 0 000011122222221 111111100000 0111111 122211 211
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 000694 1279 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1319 (1349)
Q Consensus 1279 H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~ 1319 (1349)
..+.+..+.+||+.++|+--..+|.|.+-+....+....+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 23457789999999999999999999998877777666655
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.20 E-value=9.4 Score=49.06 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEec----CCCCEEEEEecCCeEEEEec
Q 000694 1112 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDS 1181 (1349)
Q Consensus 1112 s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs----~~g~~LvsgS~DgtIkVWDl 1181 (1349)
...+-+.-+.-++.-+..+...++.|||.+.+...........+.|.+++ ++++.+++.+..+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 34444555555555445555668999999999887766666778888754 78999999999999988864
No 395
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.05 E-value=12 Score=50.61 Aligned_cols=142 Identities=18% Similarity=0.099 Sum_probs=77.7
Q ss_pred HhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhc--CcchhhHhhhcccchhHHHHHHHHHHHh
Q 000694 703 LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFT--AVAPLACLLQSGEKRAIMIALEFFHEIL 780 (1349)
Q Consensus 703 ~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~--~~~~~~~ll~~~~~~~~~~a~~~l~ELl 780 (1349)
+.+|+..+-...|+..++..+.+-|.+++.-|-. +...- ....+++++...+...|..|+.-|.++=
T Consensus 735 v~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~-----------~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 735 VRALVSVDDVESVAGAATDENREVRIAVAKGLAT-----------LGAGGAPAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHH-----------hccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 3334333333345555555666666666665531 11111 1234555666666666666666664432
Q ss_pred ccC-----------------chhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCCCCcchHH
Q 000694 781 RIP-----------------RSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEE 843 (1349)
Q Consensus 781 ~l~-----------------R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~~s~yree 843 (1349)
.-. |..+.+-|..+. +-..+..|+-.|+...+.=|--+|.-|-++.. -++
T Consensus 804 ~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~---~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~~~ 870 (897)
T PRK13800 804 CPPDDVAAATAALRASAWQVRQGAARALAGAA---ADVAVPALVEALTDPHLDVRKAAVLALTRWPG----------DPA 870 (897)
T ss_pred CcchhHHHHHHHhcCCChHHHHHHHHHHHhcc---ccchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CHH
Confidence 110 122333343332 23345666666766666666666666655421 256
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHH
Q 000694 844 AMQVILKAVASEESSTMQLLSSFILS 869 (1349)
Q Consensus 844 Av~~i~~al~~~~~~~~q~~~~~al~ 869 (1349)
|+++|..+|+ .++..|+..|++||-
T Consensus 871 a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 8888888887 447789999988873
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=88.99 E-value=13 Score=46.50 Aligned_cols=179 Identities=8% Similarity=0.027 Sum_probs=87.9
Q ss_pred EEEEEECCC-----cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEEccCCeEEEEEEecC
Q 000694 1081 LLCSGFSDG-----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD--KTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1081 ~LaSGS~DG-----tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D--GtIrVWDl~tg~~~~~~~~~h 1153 (1349)
.+++||.++ ++..||..++++..+..+.........+. -+|...+.||.+ .++..||..+++... ....
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~--~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVN--MPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEE--CCCC
Confidence 467777653 56778888876544333332222222222 366666777754 357888887766532 2221
Q ss_pred CCCe---EEecCCCCEEEEEecCC---eEEEEecCCcceeec----cCCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcc
Q 000694 1154 KEPI---RKLDTYGKTIFASTQGH---RMKVIDSSRTLKDIY----RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE 1223 (1349)
Q Consensus 1154 ~~~V---~sLs~~g~~LvsgS~Dg---tIkVWDl~~~~~~~~----~~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~ 1223 (1349)
..+. .....++...+.|+.++ .+..||.....-... ....-.++..-+|++++.| |.+.+||..+++-
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W 427 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSNTW 427 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCCcE
Confidence 1111 12234555556666543 466787753211111 1111123344677877643 4577888877754
Q ss_pred ccccccccccccCCCCeEEEEEcCCceEEEEEecCC---CeEEEEECCCC
Q 000694 1224 REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG---SNIKEWRRHRK 1270 (1349)
Q Consensus 1224 ~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dD---gtIrIWDl~t~ 1270 (1349)
..+... .....-..++...+.++++++...+ ..+..||..++
T Consensus 428 ~~~~~m-----~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 428 TLIDDP-----IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEcCCC-----CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 332111 0111122345556666666542111 24555555443
No 397
>PHA02790 Kelch-like protein; Provisional
Probab=88.61 E-value=15 Score=45.96 Aligned_cols=168 Identities=7% Similarity=0.017 Sum_probs=77.2
Q ss_pred eEEEEEccCCeEEEEEEecCCC-CeEEecCCCCEEEEEecC--CeEEEEecCCcc-ee---eccCCCeEEEEeeCCEEEE
Q 000694 1134 TIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQG--HRMKVIDSSRTL-KD---IYRSKGIKSMSVVQGKIYI 1206 (1349)
Q Consensus 1134 tIrVWDl~tg~~~~~~~~~h~~-~V~sLs~~g~~LvsgS~D--gtIkVWDl~~~~-~~---~~~~~~V~~La~~dg~LlS 1206 (1349)
++..||..+++........... .......++...+.|+.+ ..+..||..... .. ......-.+...-+|++++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYv 367 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYV 367 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEE
Confidence 4667787776543211111111 111123445555566543 357777765211 11 1111111233346788775
Q ss_pred -EeCC---CcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--EecCCC
Q 000694 1207 -GCMD---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAPEKG 1280 (1349)
Q Consensus 1207 -Gs~D---GsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~--tl~gH~ 1280 (1349)
||.+ ..+..||..+++-....+. . ....-.++....+.+++++ |.+.+||..+++-.. .+....
T Consensus 368 iGG~~~~~~~ve~ydp~~~~W~~~~~m-~----~~r~~~~~~~~~~~IYv~G-----G~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 368 IGGHSETDTTTEYLLPNHDQWQFGPST-Y----YPHYKSCALVFGRRLFLVG-----RNAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred ecCcCCCCccEEEEeCCCCEEEeCCCC-C----CccccceEEEECCEEEEEC-----CceEEecCCCCcEeEcCCCCCCc
Confidence 6544 3477888877643322111 0 0111123444556666553 357788887653322 222111
Q ss_pred CCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQ 1313 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~D-----GtVrVWDl~tg~ 1313 (1349)
... +++ .-+|+..+.||.+ .+|.+||..+.+
T Consensus 438 ~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 438 DNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 112 222 3467777777754 245566655443
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.80 E-value=1.3 Score=37.54 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 000694 1280 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1315 (1349)
Q Consensus 1280 ~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l 1315 (1349)
...|..++|+|...+||.|+.||.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 346899999999999999999999999998 66544
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.76 E-value=62 Score=37.73 Aligned_cols=259 Identities=13% Similarity=0.094 Sum_probs=128.9
Q ss_pred CCEEEEEE--cCC-E-EEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCe-EEEEEccCC
Q 000694 1070 GAVTALIY--YKG-L-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKT-IGVWQMVQR 1143 (1349)
Q Consensus 1070 ~~Vt~Laf--sdg-~-LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~-LaSGS~DGt-IrVWDl~tg 1143 (1349)
.+|..-+| .+| + +++-+.+|.+. ..+.- .-.+| .|+|+|.... ++-+-.-|+ ..++|..++
T Consensus 35 qavfasaf~~~dgs~g~a~~~eaGk~v-~~~~l-------paR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~ 101 (366)
T COG3490 35 QAVFASAFDARDGSFGAATLSEAGKIV-FATAL-------PARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGA 101 (366)
T ss_pred cchheeeeeccCCceeEEEEccCCcee-eeeec-------ccccC-----CeecCCCCcceEEEEecCCceEEEECCCCC
Confidence 34555555 244 3 77777777652 11110 01233 4667776543 444444444 357888776
Q ss_pred eEEEEEEecCCC---CeEEecCCCCEEEEEecC-----CeEEEEecCCcceeec--cCC--CeEEEEe-eCCEEEEEeCC
Q 000694 1144 KLELIEVIATKE---PIRKLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIY--RSK--GIKSMSV-VQGKIYIGCMD 1210 (1349)
Q Consensus 1144 ~~~~~~~~~h~~---~V~sLs~~g~~LvsgS~D-----gtIkVWDl~~~~~~~~--~~~--~V~~La~-~dg~LlSGs~D 1210 (1349)
+........... .--.++++|..++..-.| |.|-|||.+.....+- ..+ +-..+.+ +||+.+++...
T Consensus 102 ~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 102 QEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 654333222111 112377888888876544 5799999985433322 222 2455666 78876654332
Q ss_pred C-------------------cEEEEEccCCccccccccccccc--cCCCCeEEEEEcCCceEEEEEecCC----CeEEEE
Q 000694 1211 S-------------------SIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEG----SNIKEW 1265 (1349)
Q Consensus 1211 G-------------------sI~IWDl~t~~~~~i~~~lk~~~--~h~~~I~sL~~~pd~i~las~S~dD----gtIrIW 1265 (1349)
| ++.+.|..++...+. ..+. .+.-.|..++..+++...+.+-..+ ---.+=
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg 257 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVG 257 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCccee
Confidence 2 233334333321110 0001 2234566666666665444432111 000011
Q ss_pred ECCCCCeEEEecC-------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEE
Q 000694 1266 RRHRKPQISIAPE-------KGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCG 1337 (1349)
Q Consensus 1266 Dl~t~~li~tl~g-------H~~~VtsLafSPDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~~LaSG 1337 (1349)
-...++.+.-+.. ....|-+++.+.+..+++..+ ..+...+||..+|..+..-.-. ....++....-+++.
T Consensus 258 ~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~~~gf~vs 336 (366)
T COG3490 258 HFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAAKGGFAVS 336 (366)
T ss_pred eccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceeccCceEEe
Confidence 1112222222221 123677888887666665555 4556778999999887554321 122334444445555
Q ss_pred ECCCcEEEe
Q 000694 1338 TETGLIKGW 1346 (1349)
Q Consensus 1338 S~DGtIrIW 1346 (1349)
+.+|.+.++
T Consensus 337 sg~G~~~~~ 345 (366)
T COG3490 337 SGQGRIIFY 345 (366)
T ss_pred cCCceEEec
Confidence 666777644
No 400
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.66 E-value=17 Score=46.02 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=117.0
Q ss_pred hhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHHHHH
Q 000694 651 TLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISL 730 (1349)
Q Consensus 651 ~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~~~~ 730 (1349)
..+++|.++..+...+. .=.++|+-+|..|.. . ...+..+..+.++..|...+...+..-|.++
T Consensus 117 ~~~l~~~i~~~L~~~d~----------~Va~~A~~~L~~l~~-~-----~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv 180 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL----------SVAKAAIKALKKLAS-H-----PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRV 180 (503)
T ss_pred CccHHHHHHHHHcCCcH----------HHHHHHHHHHHHHhC-C-----chhHHHHhCcchHHHHHHHHhccCHHHHHHH
Confidence 34568888888875442 113566666777753 1 1234445555556677777776688889999
Q ss_pred HHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHh
Q 000694 731 ATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSL 810 (1349)
Q Consensus 731 ~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~l 810 (1349)
-+++...........+++...==...++..|-+.+.=.+.+|+++|.||..-+= . ++-|-+.|.+..+.-++..-
T Consensus 181 ~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~--g---~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 181 YELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH--G---LQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh--H---HHHHHhCCHHHHHHHHHhcc
Confidence 999988877777777777765445556666777777789999999999998321 1 22223334444444444333
Q ss_pred hcccchhhHHHHHHHhhhhccc--CCCCCCcchHHHHHHHHHHHh---cCCChhHHHHHHHHHHhcCcccccCCchh
Q 000694 811 QQLQSDYQLLAANLLLQLDTLE--NTTGKSVFTEEAMQVILKAVA---SEESSTMQLLSSFILSNIGGTFSWTGEPY 882 (1349)
Q Consensus 811 q~~~~e~~~~~a~lllqldll~--ep~~~s~yreeAv~~i~~al~---~~~~~~~q~~~~~al~~l~g~fs~sG~~~ 882 (1349)
..-|.--..++-+.+.-..-+. +|.+.- +..-++++.|- .+.+...+.-|-+||-++| .+..|+-+
T Consensus 256 ~~dp~~~~~~l~g~~~f~g~la~~~~~~v~----~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig--st~~G~~~ 326 (503)
T PF10508_consen 256 EEDPRLSSLLLPGRMKFFGNLARVSPQEVL----ELYPAFLERLFSMLESQDPTIREVAFDTLGQIG--STVEGKQL 326 (503)
T ss_pred ccCCcccchhhhhHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh--CCHHHHHH
Confidence 2222011112222222222111 222221 11223333333 3347777788888998887 44456544
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.30 E-value=1.5 Score=37.17 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
...|.+++|+|..+.|+.|+.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 444
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.84 E-value=62 Score=36.76 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=102.3
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEEccCCeEE-EEEEe---c-
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG---ESLLSGSADKTIGVWQMVQRKLE-LIEVI---A- 1152 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg---~~LaSGS~DGtIrVWDl~tg~~~-~~~~~---~- 1152 (1349)
++.+--..|.|.-||..+.+.. ..++.+. ++.++.+--.+ .+.+.++..-.|.=||......+ ..... .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~-ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVY-RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred EEEEEeccCceehhhhhhhheE-EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444445566777998876532 2233322 23444443222 23444444444555774332211 11100 0
Q ss_pred -CCCCeE--EecCCCCEEEEEe----------cCCeEEEEecCCcceeeccCCC-eEEEEe-eC-CEEE-EEeCCCcEEE
Q 000694 1153 -TKEPIR--KLDTYGKTIFAST----------QGHRMKVIDSSRTLKDIYRSKG-IKSMSV-VQ-GKIY-IGCMDSSIQE 1215 (1349)
Q Consensus 1153 -h~~~V~--sLs~~g~~LvsgS----------~DgtIkVWDl~~~~~~~~~~~~-V~~La~-~d-g~Ll-SGs~DGsI~I 1215 (1349)
.+.... .++|+|.+ +.|. ..|.++.|-..++...++..-. -+.++| .+ ..++ +-+.+-.|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 011111 15577776 3332 2345666666555544443333 234445 22 2333 4667778877
Q ss_pred EE--ccCCcccccc--cccccccc-CCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1216 LA--VSNNVEREIK--APFKSWRL-QSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1216 WD--l~t~~~~~i~--~~lk~~~~-h~~~I~sL~~~-pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
|| ..++...... ..++.... .......+++. .+..++++++ +++|.-+|..+|+.+..+.-.+..|++++|.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--g~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--GGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--CcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 77 5555321110 00010000 00111112223 3456666664 7899999999999999999889999999997
Q ss_pred c
Q 000694 1290 E 1290 (1349)
Q Consensus 1290 P 1290 (1349)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
No 403
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=86.60 E-value=97 Score=38.81 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHhhhcccchhhhhhchhhHHHHHHHhhhcCCcCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000694 523 KSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTT 602 (1349)
Q Consensus 523 ~~~~~~~l~~ai~~l~~se~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~ 602 (1349)
..++...+.+.|..+.++.+- .-=..|++-+.++++. +|+ +..+.+++.+...| .+.++.|+.+|+.+|.+
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~---~p~----~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSP-YVRKKAALALLKIYRK---DPD----LVEDELIPKLKQLL-SDKDPSVVSAALSLLSE 178 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHH---CHC----CHHGGHHHHHHHHT-THSSHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcCCch-HHHHHHHHHHHHHhcc---CHH----HHHHHHHHHHhhhc-cCCcchhHHHHHHHHHH
Confidence 456667777777777655544 2223466677777666 343 22222555555555 88899999999999999
Q ss_pred hhhcCcchhhhhhhcCCChhHHHHHHhhc--chhhhhhhhhcC--CChhhhhh-hcchhHHHHHHhcccccccccccccc
Q 000694 603 IILANESVIEDIKKKGLRLSDLATALKRN--VPEAAILIYLIK--PSPTEIKT-LELLPTLVEVICTSKLYKGKLESVRL 677 (1349)
Q Consensus 603 ~i~~~~~~~~~~~~~d~~~~~~~~~lk~~--~~~aavl~yll~--p~~~q~~~-~~~~p~~~~v~~~~~~~~~~~~~~~~ 677 (1349)
+ ..++.....+.. +-+..|.++++.. +....++-.+-+ |...+... ...++.+...+...+.
T Consensus 179 i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~---------- 245 (526)
T PF01602_consen 179 I-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP---------- 245 (526)
T ss_dssp H-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred H-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc----------
Confidence 9 333222111100 1122233333332 444444333333 33333332 4667777777764321
Q ss_pred CchhhHHHH-HHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcch
Q 000694 678 TPPAASLMI-IEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAP 756 (1349)
Q Consensus 678 ~p~~aa~~~-l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~ 756 (1349)
+|.+ .-.++........ ....++..|...+...+.+-|..+...|..-.+.. ..++. +...
T Consensus 246 -----~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~ 307 (526)
T PF01602_consen 246 -----SVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF---NQSL 307 (526)
T ss_dssp -----HHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG---THHH
T ss_pred -----HHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh---hhhh
Confidence 1211 1111111111100 01223444555555556656666655555444433 22332 4444
Q ss_pred hhHhhh-cccchhHHHHHHHHHHHhc
Q 000694 757 LACLLQ-SGEKRAIMIALEFFHEILR 781 (1349)
Q Consensus 757 ~~~ll~-~~~~~~~~~a~~~l~ELl~ 781 (1349)
.+..+. ..+..-|..|+.+|..|+.
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhheecCCCChhHHHHHHHHHhhccc
Confidence 444444 5666667777777777663
No 404
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.48 E-value=88 Score=38.17 Aligned_cols=216 Identities=8% Similarity=0.026 Sum_probs=89.0
Q ss_pred EEcCCCCEEEE-EeCCC--eEEEEEccCCeEEEEEEecCCCC-eEEecCCCCEEEEEecCCeEEEEecCCcce-eeccCC
Q 000694 1118 SLFEPGESLLS-GSADK--TIGVWQMVQRKLELIEVIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTLK-DIYRSK 1192 (1349)
Q Consensus 1118 afSpdg~~LaS-GS~DG--tIrVWDl~tg~~~~~~~~~h~~~-V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~-~~~~~~ 1192 (1349)
+|.++|+.|+- +..|| .+.+.|+.+++............ -..+++.++.++....+..+.-.|+..... .++...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46788976554 44455 45566888887754333222222 234567778877776667787778764221 222111
Q ss_pred C--eEEEEe---eCCEEEEEeC-----------------------CCcEEEEEccCCccccccccccccccCCCCeEEEE
Q 000694 1193 G--IKSMSV---VQGKIYIGCM-----------------------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV 1244 (1349)
Q Consensus 1193 ~--V~~La~---~dg~LlSGs~-----------------------DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~ 1244 (1349)
. +-...+ .++..++|.. ...|.-.|+.+++...+ -.....+..+.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v-------~~~~~wlgH~~ 194 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV-------FEDTDWLGHVQ 194 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE-------EEESS-EEEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE-------EecCccccCcc
Confidence 1 111111 3344443321 12334444554433222 11234455677
Q ss_pred EcCCceEEEEEecC---CC-eEEEEECCC-CCeEEEecCCCC--CeEEEEEecCCCEEEEEe-----CCCcEEEEECCCC
Q 000694 1245 VYKDWLYSASSSVE---GS-NIKEWRRHR-KPQISIAPEKGT--TIQAMAVVEDFIYLNYNS-----SASSLQIWLRGTQ 1312 (1349)
Q Consensus 1245 ~~pd~i~las~S~d---Dg-tIrIWDl~t-~~li~tl~gH~~--~VtsLafSPDg~~LaSGS-----~DGtVrVWDl~tg 1312 (1349)
++|....++.+.-+ +. .-++|-+++ +.....+..+.. .+..=-|.|||..|.--+ .+..|.-+|..++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 77776656555432 22 136676643 334444443332 333445889998765422 2334555677777
Q ss_pred cEEEEEeCCCCe-EEEEEcCCEEEEEECC
Q 000694 1313 QKVGRISAGSKI-TSLLTANDIVLCGTET 1340 (1349)
Q Consensus 1313 ~~l~sl~~hs~V-tsLs~dg~~LaSGS~D 1340 (1349)
+..........+ .-.+.+|++++-=+.|
T Consensus 275 ~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCCceeeeEEcCCCCEEEecCCC
Confidence 654333222111 1112356666544443
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.25 E-value=44 Score=37.48 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=44.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 000694 1080 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVW 1138 (1349)
Q Consensus 1080 g~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~D------GtIrVW 1138 (1349)
+.|+.+...+.|.+|++.+..+....+|. .-+.|..+.++..|++|+|--.+ ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 56656577788999999976677778886 34889999999999999985332 256665
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.03 E-value=77 Score=37.12 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=125.1
Q ss_pred CCEEEEEEcCCEEEEEECCCcEEEEECCCCc-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EE
Q 000694 1070 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-EL 1147 (1349)
Q Consensus 1070 ~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~-~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~-~~ 1147 (1349)
+--.++..++++...+..|.-+.+.|+.+.. +.+...+......-..++. .|++-+.+..|+-+.+-|+..... ..
T Consensus 129 gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 129 GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 5566777788887777756666688887643 3344444444444456666 466777777888999999976432 21
Q ss_pred EEEecCCCCeEEecCCCCEEEEEecCCeEEEEecCCcceee----ccCCC---eEEEEeeCCEEEEEeCCCcEEEEEccC
Q 000694 1148 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDI----YRSKG---IKSMSVVQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1148 ~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWDl~~~~~~~----~~~~~---V~~La~~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
.........+.++...+++....-.+..+.+-|.++..... ..... +..+.+++...+....+.-+.+.|+.+
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 22223333677777777777666666677777777533222 22222 333455777777777777777788776
Q ss_pred CccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000694 1221 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1221 ~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
.....+. ......+..-..+....+..+++- ..+..+-|...-+......+....+.+.+.+-+.+.+.+...
T Consensus 287 p~spfl~---ss~~t~g~~a~gi~ay~~y~yiad----kn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 287 PPSPFLS---SSLDTAGYQAAGIRAYGNYNYIAD----KNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred CCCCchh---ccccCCCccccceEEecCeeEecc----CCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence 5322110 011111222233333333333221 112333333222111122222223444444555567777777
Q ss_pred CCcEEEEEC
Q 000694 1301 ASSLQIWLR 1309 (1349)
Q Consensus 1301 DGtVrVWDl 1309 (1349)
+|-+.||+.
T Consensus 360 ~~gl~i~~~ 368 (370)
T COG5276 360 NGGLSIIEY 368 (370)
T ss_pred CCCEEEEEe
Confidence 777888764
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.74 E-value=13 Score=42.76 Aligned_cols=109 Identities=10% Similarity=0.059 Sum_probs=70.0
Q ss_pred CeEEEEE-cCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000694 1239 PINSLVV-YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 1316 (1349)
Q Consensus 1239 ~I~sL~~-~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~-~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~ 1316 (1349)
....+.+ +.+..+-.++......|+.+|+.+++......-.. ----++....| +...-.=.+|...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 3456677 44444444444444589999999998876544222 12223443333 333333468999999999999999
Q ss_pred EEeCCCCeEEEEEcCCEEEEEECCCcEEEeeC
Q 000694 1317 RISAGSKITSLLTANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1317 sl~~hs~VtsLs~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
++.-.+.=+.++.+|+.|+......+++++||
T Consensus 125 ~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 125 TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEE-SSS--EEEECSSCEEEE-SSSEEEEE-T
T ss_pred EEecCCcceEEEcCCCEEEEECCccceEEECC
Confidence 99876666788899998888888888999987
No 408
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.53 E-value=2.4 Score=47.71 Aligned_cols=137 Identities=17% Similarity=0.283 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhcchhhhhhhhhcCCChhhhhhh
Q 000694 573 QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTL 652 (1349)
Q Consensus 573 ~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~~~~aavl~yll~p~~~q~~~~ 652 (1349)
-|-.+=-||-..+.|+..|-||.+ -|..+.+|+|+|=.| |. .++++.
T Consensus 121 iPlylYpfL~Tt~~~r~fEyLRLt-----------------------sLGVIgaLvk~dd~e--Vi--------~fLl~T 167 (293)
T KOG3036|consen 121 IPLYLYPFLNTTSKSRPFEYLRLT-----------------------SLGVIGALVKNDDQE--VI--------RFLLTT 167 (293)
T ss_pred ChhhhHHhhhccccCCchHHHhHH-----------------------HHHHHHHHHhcCcHH--HH--------HHHHHh
Confidence 566667778788888888888862 356778888888666 43 356789
Q ss_pred cchhHHHHHHhccccccccccccccCchhhHHHHHHHHHh---cccccc-------------chh--hHhhcchhHHHhH
Q 000694 653 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT---AFDYAT-------------NNM--HLAAINSPRVLCG 714 (1349)
Q Consensus 653 ~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~---~~d~~~-------------~~~--~~~a~~~~~~~~~ 714 (1349)
|.||..++++++++| --|..|.+|++.++. |..+.= +.+ ++...+++++++-
T Consensus 168 eIVPlCLrime~GSe----------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKh 237 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSE----------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKH 237 (293)
T ss_pred hhHHHHHHHHhcccH----------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999886 335778888887764 432221 111 5666677777665
Q ss_pred HHHHHhc--CChHHHHHHHHH---------HHHhhhccCcchhHHHhhc
Q 000694 715 LLDVARH--QNLEELISLATI---------LVKCIQFDGQCRKYLSEFT 752 (1349)
Q Consensus 715 l~~~~~~--~~~ee~~~~~~i---------l~~Ci~adg~cr~~ia~~~ 752 (1349)
.+++.-. +|.+-|.+...- -..|++.|+.|+..+++-+
T Consensus 238 viRcYlrLsdnprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll 286 (293)
T KOG3036|consen 238 VIRCYLRLSDNPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLL 286 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHH
Confidence 5554432 456555544432 2468899999988877644
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.20 E-value=20 Score=46.12 Aligned_cols=60 Identities=10% Similarity=0.167 Sum_probs=46.2
Q ss_pred CEEEEEECC-CcEEEEECCCCceeEEEEeccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEc
Q 000694 1080 GLLCSGFSD-GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGESLLSGSADKTIGVWQM 1140 (1349)
Q Consensus 1080 g~LaSGS~D-GtIrVWDl~tg~~~~i~tL~gHss~VtsLafS--pdg~~LaSGS~DGtIrVWDl 1140 (1349)
+.++....+ .++.|||...+....-..+ ...+.|.++.|. |+|+.+++.|..+.|.++.-
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 444444444 4789999999876555556 456889999996 78999999999999999853
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.64 E-value=1.6e+02 Score=39.58 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=126.3
Q ss_pred CCEEEEEECCCcEEEEE--CCCCceeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEEec-CC
Q 000694 1079 KGLLCSGFSDGSIKMWD--IKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIA-TK 1154 (1349)
Q Consensus 1079 dg~LaSGS~DGtIrVWD--l~tg~~~~i~tL~gHss~VtsLafSpdg~-~LaSGS~DGtIrVWDl~tg~~~~~~~~~-h~ 1154 (1349)
.++|.++..||.+.-+. ..++.....+...-.+.|+.--.|+..++ .++++| |+-..+|.- ++++....+.- .-
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv~spls~kev 672 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLVYSPLSLKEV 672 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEEEeccchHHh
Confidence 45899999999987664 45554322222222355676667765554 455444 666666654 44443322211 11
Q ss_pred CCeEEec--CCCCEEEEEecCCeEEEEecCC----cceeeccCCCeEEEEeeC-CEEE-EEe-----------C---CCc
Q 000694 1155 EPIRKLD--TYGKTIFASTQGHRMKVIDSSR----TLKDIYRSKGIKSMSVVQ-GKIY-IGC-----------M---DSS 1212 (1349)
Q Consensus 1155 ~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~----~~~~~~~~~~V~~La~~d-g~Ll-SGs-----------~---DGs 1212 (1349)
..+..+. ..+..++.+ ..+.+++.-++. ......-+...+.+++.. ..++ +.+ . -..
T Consensus 673 ~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 673 NHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred hhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 1122233 123334433 445566655542 111222222233344421 1111 111 1 123
Q ss_pred EEEEEccCCccccccccccccccCCCCeEEEEEcCC-ceEEEEEe---------cCCCeEEEEECCCCCeEEEecCC--C
Q 000694 1213 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSS---------VEGSNIKEWRRHRKPQISIAPEK--G 1280 (1349)
Q Consensus 1213 I~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd-~i~las~S---------~dDgtIrIWDl~t~~li~tl~gH--~ 1280 (1349)
++++|-++.+....... .. ......+.+..++.+ +.+.+.+. +..|.|.+|....+..+.....+ .
T Consensus 752 l~vlD~nTf~vl~~hef-~~-~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEF-ER-NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEecCCceeEEeeccc-cc-cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 56666665532211000 00 001233455567766 44444332 23467777777553333333222 2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCe--EEEEEcCCEEEEEECCCcEEE
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKI--TSLLTANDIVLCGTETGLIKG 1345 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~-~hs~V--tsLs~dg~~LaSGS~DGtIrI 1345 (1349)
+.+.++. --+|+++|+- +..|++|+..+.+.++.-. ....+ ..+...|+.+++|.--+.|.+
T Consensus 830 Gav~aL~-~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 830 GAVYALV-EFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred cceeehh-hhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 3344443 2367777765 5789999998885554333 23344 444567999999987776654
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.26 E-value=81 Score=35.85 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=40.1
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC
Q 000694 1285 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND 1332 (1349)
Q Consensus 1285 sLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-~VtsLs~dg~ 1332 (1349)
.++...+|.+.++.-..|+|.-.|..+|+.+.++.-.. .|+|.+|-|+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 45556688888888888999999999999999998654 5999999765
No 412
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.67 E-value=5.8 Score=38.49 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=83.1
Q ss_pred hhhhhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHH
Q 000694 648 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 727 (1349)
Q Consensus 648 q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~ 727 (1349)
++.+...+|.+++.+..++ ..-+..|+..|..+-.+.++..+ .+. ..++++.|+..+..++.+=+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~----------~~~~~~a~~~l~~l~~~~~~~~~--~~~---~~~~i~~l~~~l~~~~~~v~ 66 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD----------ENVQREAAWALSNLSAGNNDNIQ--AVV---EAGGLPALVQLLKSEDEEVV 66 (120)
T ss_pred hHHHcCChHHHHHHHHcCC----------HHHHHHHHHHHHHHhcCCHHHHH--HHH---HCCChHHHHHHHhCCCHHHH
Confidence 5667788999999998643 24457777778887544333222 222 23556677777877888888
Q ss_pred HHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHh
Q 000694 728 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEIL 780 (1349)
Q Consensus 728 ~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl 780 (1349)
..++..|-.-.+.....+..+.+.--..-++++|...+...+..|+.+|..|.
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888887776655566666666656778888998888888888888887653
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.26 E-value=50 Score=42.81 Aligned_cols=198 Identities=12% Similarity=0.037 Sum_probs=94.3
Q ss_pred CCCEEEEEEcCCEEEE-EECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 000694 1069 SGAVTALIYYKGLLCS-GFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 1147 (1349)
Q Consensus 1069 ~~~Vt~Lafsdg~LaS-GS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~ 1147 (1349)
-++..+|..++..+.. .+.--.|+|++..+.- +..+.-..+.+..+.|+.+.. |+....||++.||++.......
T Consensus 43 ~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~l---L~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLYSARPYIRIFNISGQL---LGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred cCCceEEEecccccccccccceeEEEEeccccc---hHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcc
Confidence 4455566665432111 1333458888887633 333322334788999986654 6677899999999985433221
Q ss_pred EEE--ecCCCCe-EEecCCCCEEEEEecCCeEEEEe-cCCcceeeccC-----CCeEEEEe-eCCEEEEEeCCCcE----
Q 000694 1148 IEV--IATKEPI-RKLDTYGKTIFASTQGHRMKVID-SSRTLKDIYRS-----KGIKSMSV-VQGKIYIGCMDSSI---- 1213 (1349)
Q Consensus 1148 ~~~--~~h~~~V-~sLs~~g~~LvsgS~DgtIkVWD-l~~~~~~~~~~-----~~V~~La~-~dg~LlSGs~DGsI---- 1213 (1349)
... ......| .+...+ +.+++-..+|.+.+-+ ........... -.-.|+.. +++.-.++.-|-.+
T Consensus 119 ~svg~e~~~~~I~ec~~f~-~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~ 197 (829)
T KOG2280|consen 119 NSVGFESQMSDIVECRFFH-NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL 197 (829)
T ss_pred cccccccccCceeEEEEec-CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh
Confidence 101 1111112 222222 4455555555544433 32211111111 11255655 33221111111000
Q ss_pred EEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 000694 1214 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 1277 (1349)
Q Consensus 1214 ~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~ 1277 (1349)
.++-..... ... ..+......+..+.++|+..+++-.. +.|.|.+-+....+....+.
T Consensus 198 ~~~q~~~~~---~q~--~~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 198 HICQVEESR---VQL--HALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccceeccc---ccc--cccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhhhhhccC
Confidence 011111110 100 11122235677888999988887765 45678877776665555544
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.10 E-value=1.2 Score=57.34 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred EecCCCeEEEEECCCCCeEEEecCCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEECC-CCc----EEEEE
Q 000694 1255 SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA-----------VVEDFIYLNYNSSASSLQIWLRG-TQQ----KVGRI 1318 (1349)
Q Consensus 1255 ~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLa-----------fSPDg~~LaSGS~DGtVrVWDl~-tg~----~l~sl 1318 (1349)
+..+|+.|++.+.++... ..+.+|..++..++ .||||..++..+.||.++.|.+. +|+ +++..
T Consensus 200 ~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 200 YGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred eccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 344677888777655322 45566877666654 58999999999999999998532 233 33444
Q ss_pred eCCC---CeEEEEEc---------CC--EEEEEEC-CCcEEEeeC
Q 000694 1319 SAGS---KITSLLTA---------ND--IVLCGTE-TGLIKGWIP 1348 (1349)
Q Consensus 1319 ~~hs---~VtsLs~d---------g~--~LaSGS~-DGtIrIWD~ 1348 (1349)
+.|. .|-.+ ++ |. ++++++. +.-+++|.+
T Consensus 279 kphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 279 KPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred CCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeec
Confidence 4333 23333 32 22 4555554 445899975
No 415
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=16 Score=49.72 Aligned_cols=234 Identities=17% Similarity=0.046 Sum_probs=105.1
Q ss_pred eeeeeecccCCCCEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEEEeccCCC----cEEEEEEcCCCCEEEEEeCCCe
Q 000694 1059 TQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK----AVTSFSLFEPGESLLSGSADKT 1134 (1349)
Q Consensus 1059 t~tl~~~~gH~~~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss----~VtsLafSpdg~~LaSGS~DGt 1134 (1349)
.++.+.+..|.....+..+..+.+|.|..+|.|+++-...-+. ...|.. .+.-+.|-...........+..
T Consensus 27 ~~~~~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~-----~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 101 (993)
T KOG1983|consen 27 DKTNRHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF-----VGLHPKQNQINVTRIELLVGISRNLVLSDDDS 101 (993)
T ss_pred ccceecCCCCCCcceeeccccceEEEEEecccEEEecccceEE-----Eeccccccchhhhheeeeecccccceeecccc
Confidence 3343334444444444444567899999999999997765322 112221 2222233222233444455566
Q ss_pred EEEEEccCCeEEEEEEecCCCCeEEecCCCCEE-EEEecCCeEEEEecCCcceeeccCCCeEEEEeeCCEEEEEeCCCcE
Q 000694 1135 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTI-FASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSI 1213 (1349)
Q Consensus 1135 IrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~L-vsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~~dg~LlSGs~DGsI 1213 (1349)
+.+|....... ......+.++..++... ..+ ..+.+++||+................. ......-+..-.
T Consensus 102 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~- 172 (993)
T KOG1983|consen 102 LHLWSIKIKTG-----VFLKQEITSFVTDPPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSN--FVPYESLSPTLS- 172 (993)
T ss_pred eeeecccccce-----eecCCcceeccCCCCcchhcc-cCceeeEeeechhhhccceeccccccc--cceeeeecccee-
Confidence 66666533221 11233344444332222 444 788889988863221111100000000 000000000000
Q ss_pred EEEEccCCccc--cc-cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 000694 1214 QELAVSNNVER--EI-KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1290 (1349)
Q Consensus 1214 ~IWDl~t~~~~--~i-~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSP 1290 (1349)
..|...+.... .. ..+ .....+..++.+............+. .+.+-.|+.........+... ...+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 244 (993)
T KOG1983|consen 173 IEGLVIDLDTVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFN--RGLVVIKDRASKYVQSAYLPN-----GQLESR 244 (993)
T ss_pred eeccccccccceeeccccc-ccccccccccceeeeecCCCcceeee--eeeeeehhcccccchhhcccc-----cccCcc
Confidence 00111100000 00 000 11122333444444433333333332 445666665443333333221 122278
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQK 1314 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~~ 1314 (1349)
++..++++..||.+..||...++.
T Consensus 245 ~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 245 DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred CCceEEEEEecCCEEeeecCCCce
Confidence 999999999999999999988755
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.38 E-value=32 Score=42.36 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=57.8
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE----EEEecC--------------CCEE-EE
Q 000694 1237 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA----MAVVED--------------FIYL-NY 1297 (1349)
Q Consensus 1237 ~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~Vts----LafSPD--------------g~~L-aS 1297 (1349)
...+.++...|++.+.+.. ..-|.|.++|+.++..++.++|-.+.-.+ ..-... ..+| +-
T Consensus 307 ~R~~~~i~~sP~~~laA~t-DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT-DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEE-cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4568889999998877764 45579999999999999888876542111 110011 1123 33
Q ss_pred EeCCCcEEEEECCCCcEEEEEeC
Q 000694 1298 NSSASSLQIWLRGTQQKVGRISA 1320 (1349)
Q Consensus 1298 GS~DGtVrVWDl~tg~~l~sl~~ 1320 (1349)
.-.-|.|.||.+++|..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 45679999999999999988764
No 417
>PRK09687 putative lyase; Provisional
Probab=82.14 E-value=39 Score=39.47 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=79.9
Q ss_pred hhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccC
Q 000694 704 AAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 783 (1349)
Q Consensus 704 ~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~ 783 (1349)
.-++.+.++..|+..++..+.+-|..|+.-|=.. .. ... --..+++.+|...+...|..|+.-|.++= .
T Consensus 153 g~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~--~~~------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--~ 221 (280)
T PRK09687 153 SVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN-KY--DNP------DIREAFVAMLQDKNEEIRIEAIIGLALRK--D 221 (280)
T ss_pred hccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC--CCH------HHHHHHHHHhcCCChHHHHHHHHHHHccC--C
Confidence 3445678888899999888888888887777543 00 011 11245778888888888999888877631 1
Q ss_pred chhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCCCCcchHHHHHHHHHHHhcCCChhHHHH
Q 000694 784 RSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLL 863 (1349)
Q Consensus 784 R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~~s~yreeAv~~i~~al~~~~~~~~q~~ 863 (1349)
.+....+++.++.+. + - .- ++ +-|++-.- ++|+.+|...+....+..++..
T Consensus 222 ~~av~~Li~~L~~~~-~---------------~-~~-a~------~ALg~ig~-----~~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 222 KRVLSVLIKELKKGT-V---------------G-DL-II------EAAGELGD-----KTLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred hhHHHHHHHHHcCCc-h---------------H-HH-HH------HHHHhcCC-----HhHHHHHHHHHhhCCChhHHHH
Confidence 223334555555432 1 0 11 11 22333211 4899999999987778899988
Q ss_pred HHHHHH
Q 000694 864 SSFILS 869 (1349)
Q Consensus 864 ~~~al~ 869 (1349)
+.+||-
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 877763
No 418
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.12 E-value=40 Score=45.50 Aligned_cols=267 Identities=20% Similarity=0.238 Sum_probs=153.9
Q ss_pred HHHHHHh---cccchhhHHHHHHHHHHhhhcCcchhhhhhhcCC-ChhHHHHHHhhcchhh-------------hhhhhh
Q 000694 579 QLLTAIS---ASKEETVIRASVSILTTIILANESVIEDIKKKGL-RLSDLATALKRNVPEA-------------AILIYL 641 (1349)
Q Consensus 579 ~~~e~~~---~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~-~~~~~~~~lk~~~~~a-------------avl~yl 641 (1349)
+++++|| +|-++..-+.|++||+.+. +++.+.+. .++.|.++|-+++.+. |+..|+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~-------~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLP-------ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhh-------hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 3445554 5677888899999998653 44455554 6788889998875432 334444
Q ss_pred c-CCChhhhhhhcchhHHHHHHhccccccccccccccCchhhHHHHHHH---HHhccccccchhhHhhcchhHHHhHHHH
Q 000694 642 I-KPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEV---LVTAFDYATNNMHLAAINSPRVLCGLLD 717 (1349)
Q Consensus 642 l-~p~~~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~---ll~~~d~~~~~~~~~a~~~~~~~~~l~~ 717 (1349)
= +++.-+ +-.++||.++.|+..--..+++ ++|--.++. |+...-.-.+. | -.++|.+-+.
T Consensus 191 ~~~~~~~~-~~~~llP~~l~vl~~~i~~~d~---------~~a~~~l~~l~El~e~~pk~l~~-~-----l~~ii~~~l~ 254 (1075)
T KOG2171|consen 191 ENNKSEVD-KFRDLLPSLLNVLQEVIQDGDD---------DAAKSALEALIELLESEPKLLRP-H-----LSQIIQFSLE 254 (1075)
T ss_pred ccchHHHH-HHHHHhHHHHHHhHhhhhccch---------HHHHHHHHHHHHHHhhchHHHHH-H-----HHHHHHHHHH
Confidence 2 222222 3457899999999873321221 233333333 33222111111 1 2345667777
Q ss_pred HHhcCChHH--HHHHHHHHHHhhhc-cCcchhHHHhhcCcchhhHhhhc----ccc---------------hhHHH---H
Q 000694 718 VARHQNLEE--LISLATILVKCIQF-DGQCRKYLSEFTAVAPLACLLQS----GEK---------------RAIMI---A 772 (1349)
Q Consensus 718 ~~~~~~~ee--~~~~~~il~~Ci~a-dg~cr~~ia~~~~~~~~~~ll~~----~~~---------------~~~~~---a 772 (1349)
.+++.++++ |..|.++|++|++. -+.||.+ +. .-..-|..+|+- ..+ ..... |
T Consensus 255 Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~-~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~ 332 (1075)
T KOG2171|consen 255 IAKNKELENSIRHLALEFLVSLSEYAPAMCKKL-AL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA 332 (1075)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc-hh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence 777765554 66778888888875 4566643 22 222222223321 000 01111 2
Q ss_pred HHH-----------------HHHHhccC----chhHHHHHHHhhhcCchh--------HHHHHHHHhhcccchhhHHHHH
Q 000694 773 LEF-----------------FHEILRIP----RSSAIDLLQRIHKEGNIN--------ILHILKLSLQQLQSDYQLLAAN 823 (1349)
Q Consensus 773 ~~~-----------------l~ELl~l~----R~~~~~~l~~i~~~g~~~--------~mh~ll~~lq~~~~e~~~~~a~ 823 (1349)
+.+ +..++.-. |..+.--|.-|-+ ||-. +|.+.+-+|+-.-|.=|-.+-+
T Consensus 333 lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E-Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 333 LDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE-GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred HHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 222 22222222 2233334444433 3332 4788889999999998888888
Q ss_pred HHhhhhcccCCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 000694 824 LLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNI 871 (1349)
Q Consensus 824 lllqldll~ep~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l 871 (1349)
.+-|+..==.|.=-+-|+|-=..+|+..|+...+++||.-||-||+++
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 888886533354444555555569999999999999999999999976
No 419
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.10 E-value=40 Score=42.46 Aligned_cols=263 Identities=14% Similarity=0.105 Sum_probs=129.3
Q ss_pred CCCEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1069 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1069 ~~~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~g-Hss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
...|..+.++ .|.+..|+.||.. .||..+++. ++.-.. -..+|..+..+-.|. +..|+.+| |.+.+....+..
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gka--lql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGKA--LQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccceE--EEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 3467777775 6789999999964 566666553 222222 225666666655554 67788776 566666542221
Q ss_pred EEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCCcceeec--cC---CCeEEEEe-eCCEEEEEeCCCcEEEEEcc
Q 000694 1147 LIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIY--RS---KGIKSMSV-VQGKIYIGCMDSSIQELAVS 1219 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~~~~~~~--~~---~~V~~La~-~dg~LlSGs~DGsI~IWDl~ 1219 (1349)
.....-....|..+. .....++.|+..|-.+.--.++...... .+ ..|.++.. .+|.+.+++.+|.+++-+-.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 111112233344443 3345677777766543322222221111 11 22555655 78899999988877743321
Q ss_pred CCccccccccccccccCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEE
Q 000694 1220 NNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYL 1295 (1349)
Q Consensus 1220 t~~~~~i~~~lk~~~~h~~~I~sL~~~pd---~i~las~S~dDgtIrIWDl~t~~li~tl~-gH~~~VtsLafSPDg~~L 1295 (1349)
-..... .....+..+...+..+. +..-...+ -|...+-+-.++..+.... .....|+...+..+| .+
T Consensus 319 w~~ma~------in~~dG~v~~~~~~a~~ll~~~v~~~ns--~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~l 389 (671)
T COG3292 319 WKRMAV------INDSDGGVSQYEAVAPALLSWGVRQLNS--IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RL 389 (671)
T ss_pred hhheee------eecCCCchhhhhccCchhcccceeeccc--cceEEEecCCCCcEEEEeeeccccccchhhhccCC-cE
Confidence 110000 00111122222222221 11111110 1223334444454444322 223456666666644 34
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEEeC--CCCeEEEEEcC-CEEEEEECCCcEEE
Q 000694 1296 NYNSSASSLQIWLRGT-QQKVGRISA--GSKITSLLTAN-DIVLCGTETGLIKG 1345 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~t-g~~l~sl~~--hs~VtsLs~dg-~~LaSGS~DGtIrI 1345 (1349)
..|+...-+--|+-++ +.......+ .+.|.++..++ +-|..|+.+|.++.
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 4455443355566555 444444443 34577777652 24888999987653
No 420
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=17 Score=43.18 Aligned_cols=192 Identities=20% Similarity=0.176 Sum_probs=144.8
Q ss_pred cccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCc
Q 000694 675 VRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAV 754 (1349)
Q Consensus 675 ~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~ 754 (1349)
+.+.-+..|+--|+-++.-.|-+- .+..+|+... |+..+++.+.+=|..||.++-.|.|-.--|-..+-+.--+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAn---dl~~~ggl~~---ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNAN---DLISLGGLVP---LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHH---hHhhccCHHH---HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 455667788888888886665433 3555666664 5557789999999999999999999999999999999999
Q ss_pred chhhHhhhc-ccchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHH-HHHHhhhhccc
Q 000694 755 APLACLLQS-GEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLA-ANLLLQLDTLE 832 (1349)
Q Consensus 755 ~~~~~ll~~-~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~-a~lllqldll~ 832 (1349)
++++..|-+ ....+|..|+.=++-|++-+--...+|++. +---.|.-.||+-..+.+.-+ |..|++.=+..
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-------~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-------NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-------CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 999998877 667788999999999998886444445432 113344555566434444433 44455555556
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCcccccCC
Q 000694 833 NTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTG 879 (1349)
Q Consensus 833 ep~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l~g~fs~sG 879 (1349)
++..-.+...+-..-.++.+..+....+++.+-.+++.+--.|+..+
T Consensus 242 ~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 242 DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 67777799999999999999999888899999999998877777666
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.32 E-value=1.2e+02 Score=35.67 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=89.4
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecCCeEEEEecCCc
Q 000694 1107 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1107 L~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
+.|-...|.++.|+|+.+.|++......-.||=...|+.+.......-..--. +..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44555669999999999999998888888888777788765433221111111 2244555555556666776665521
Q ss_pred --c----------eeecc-CCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCcc-ccc---cccccccccCCCCeEEEEE
Q 000694 1185 --L----------KDIYR-SKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVE-REI---KAPFKSWRLQSKPINSLVV 1245 (1349)
Q Consensus 1185 --~----------~~~~~-~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~-~~i---~~~lk~~~~h~~~I~sL~~ 1245 (1349)
. ....+ +.+...+++ .+..++.+=.-.-+.+|.+..... ... ..+...-...-..+.++.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 1 11111 445777787 445666666666666666653321 000 0000000001234556677
Q ss_pred cCCceEEEEEecCCCeEEEEECCC
Q 000694 1246 YKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1246 ~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
++..-.+..-+.+++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 755444444555666666666543
No 422
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=80.62 E-value=25 Score=43.49 Aligned_cols=263 Identities=15% Similarity=0.158 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhh---c---chhhhhhhhhcC---
Q 000694 573 QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR---N---VPEAAILIYLIK--- 643 (1349)
Q Consensus 573 ~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~---~---~~~aavl~yll~--- 643 (1349)
.+.+.+-+.+.|.++.+...+..+|..|.+|...+ ..|+.+-+.+ .+..|+.+|++ | ..++...+|+|.
T Consensus 141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~ 218 (429)
T cd00256 141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP 218 (429)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhccH
Confidence 44566677777777777888889999998887665 5677777777 89999999987 3 578888888885
Q ss_pred CChhhhhhhcchhHHHHHHhccccccccccccccCch--hhHHHHHHHHHhcc-ccccchhhHhhcchhHHHhHHHHHHh
Q 000694 644 PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP--AASLMIIEVLVTAF-DYATNNMHLAAINSPRVLCGLLDVAR 720 (1349)
Q Consensus 644 p~~~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~--~aa~~~l~~ll~~~-d~~~~~~~~~a~~~~~~~~~l~~~~~ 720 (1349)
+....+...+++|.+++|++.+. ++| --+++++.+|++.. +...+......+..-++++ ++..++
T Consensus 219 ~~~~~~~~~~~i~~l~~i~k~s~-----------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 219 HAAEVLKRLSLIQDLSDILKEST-----------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHHhhccccHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 44456667899999999999733 222 24566688888632 2222222211111112211 223332
Q ss_pred c-C--Ch---HHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccCchhHHHHHHHh
Q 000694 721 H-Q--NL---EELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRI 794 (1349)
Q Consensus 721 ~-~--~~---ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i 794 (1349)
. + |. |.-..+-++|-..++.=.+=-.|.++--.+.-----.|..++==|.+| ..+
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~-------------------~kf 347 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA-------------------DRL 347 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH-------------------HHH
Confidence 2 1 11 112223334444444444444444442221100001222222222222 112
Q ss_pred hhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccC--CCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 000694 795 HKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNI 871 (1349)
Q Consensus 795 ~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~e--p~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l 871 (1349)
++ ..+...-.|.-.|..+.-.. .+|+-..=+=-++. |.+..+-..--++..+..|=.+++++|+-+|-.|+--|
T Consensus 348 ~~-~~~~llk~L~~iL~~s~d~~--~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 348 NE-KNYELLKILIHLLETSVDPI--ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred Hh-cchHHHHHHHHHHhcCCCcc--eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22 22555666666675543222 22333322222222 66666666666778888888888999999777776444
No 423
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=13 Score=46.42 Aligned_cols=263 Identities=19% Similarity=0.219 Sum_probs=160.4
Q ss_pred HHhhhcccchhhhhhchhhHHHHHHHhhhcCC-cCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCc-ch
Q 000694 533 AISSLFFSGDLRKCNKDYVVEVTTLYKMLNSK-TGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE-SV 610 (1349)
Q Consensus 533 ai~~l~~se~l~~~e~~~~~~i~~~~~~~~~~-~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~-~~ 610 (1349)
.|..| .|-+-.=||+ ||..+..+ -|| |....+....-+++-||-.|..+.....+|.++-.|+-|.-.-+ +-
T Consensus 157 fi~Ll-~s~~~~v~eQ-avWALgNI----agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 157 FIQLL-SSPSADVREQ-AVWALGNI----AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred HHHHh-cCCcHHHHHH-HHHHHhcc----ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 34433 3555666764 55444444 222 45666677888899999999999999999999999998876552 10
Q ss_pred hhhhhhcCCChhHHHHHHhhc----chhhhh-hhhhcCCCh--hh-hhhhcchhHHHHHHhccccccccccccccCchhh
Q 000694 611 IEDIKKKGLRLSDLATALKRN----VPEAAI-LIYLIKPSP--TE-IKTLELLPTLVEVICTSKLYKGKLESVRLTPPAA 682 (1349)
Q Consensus 611 ~~~~~~~d~~~~~~~~~lk~~----~~~aav-l~yll~p~~--~q-~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~a 682 (1349)
- .-.+.+=|..|.+|++.. +..|.- |=||..=+. .| ++....+|-|++.|...+- .. ..+
T Consensus 231 ~--~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~----~v------~~P 298 (514)
T KOG0166|consen 231 P--FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP----KV------VTP 298 (514)
T ss_pred c--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc----cc------ccH
Confidence 0 000112255677888775 555553 456775332 33 3578889999999986331 10 133
Q ss_pred HHHHHHHHHhccccccchh--------------------------------------hHhhcchhHHHhHHHHHHhcCCh
Q 000694 683 SLMIIEVLVTAFDYATNNM--------------------------------------HLAAINSPRVLCGLLDVARHQNL 724 (1349)
Q Consensus 683 a~~~l~~ll~~~d~~~~~~--------------------------------------~~~a~~~~~~~~~l~~~~~~~~~ 724 (1349)
|+..+..++||.|+-|+.+ |+-|+-.-.+++-|++.++.++.
T Consensus 299 aLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef 378 (514)
T KOG0166|consen 299 ALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEF 378 (514)
T ss_pred HHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccch
Confidence 4444444444444433322 44444444567777777877777
Q ss_pred HHHHHHHHHHH-HhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccCchhHH---HHHHHhhhc-Cc
Q 000694 725 EELISLATILV-KCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAI---DLLQRIHKE-GN 799 (1349)
Q Consensus 725 ee~~~~~~il~-~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~---~~l~~i~~~-g~ 799 (1349)
+=|..||=.+. +|.-.+-.=-.|+.+.--..||-.||-..+.+--..++.=|.=|++.-....+ .-+..+-+| |+
T Consensus 379 ~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg 458 (514)
T KOG0166|consen 379 DIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC
Confidence 66666665555 55555544456777777889999999766666666677777777766653332 444444444 99
Q ss_pred hhHHHHHHHHhhcccchh
Q 000694 800 INILHILKLSLQQLQSDY 817 (1349)
Q Consensus 800 ~~~mh~ll~~lq~~~~e~ 817 (1349)
++-|+.| |....|+
T Consensus 459 ldkiE~L----Q~hen~~ 472 (514)
T KOG0166|consen 459 LDKIENL----QSHENEE 472 (514)
T ss_pred hhHHHHh----hccccHH
Confidence 8888754 5555544
No 424
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=80.11 E-value=1.9e+02 Score=37.67 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE--EEecCC------CCeEEec--CCCCEEEEEec-CC---eE
Q 000694 1111 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI--EVIATK------EPIRKLD--TYGKTIFASTQ-GH---RM 1176 (1349)
Q Consensus 1111 ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~--~~~~h~------~~V~sLs--~~g~~LvsgS~-Dg---tI 1176 (1349)
++.|..|.|.++++.++..-.+|.|.+||...+..... ....+. ..|..+. ...+.+++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 57899999999999999999999999999944332211 111111 1222222 23455665555 33 46
Q ss_pred EEEec--CC-cceee----ccCCC--eEEEEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEE-Ec
Q 000694 1177 KVIDS--SR-TLKDI----YRSKG--IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV-VY 1246 (1349)
Q Consensus 1177 kVWDl--~~-~~~~~----~~~~~--V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~-~~ 1246 (1349)
+++.+ +. ..... ..... -..+++..|+++.= .++.|.+|++...+..........+......+.++. ..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 77777 22 11111 11112 23344478887765 778999999977643322111112222212344444 44
Q ss_pred CCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 000694 1247 KDWLYSASSSVEGSNIKEWRRHRKPQISIAP 1277 (1349)
Q Consensus 1247 pd~i~las~S~dDgtIrIWDl~t~~li~tl~ 1277 (1349)
++.+ +++. +++|++.|+.-..++..+.
T Consensus 288 ~nRv-LLs~---~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 288 PNRV-LLSV---NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCeE-EEEc---CCEEEEEeehhhhhhhhhh
Confidence 4444 4433 6689999987655554443
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.67 E-value=75 Score=40.36 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=90.2
Q ss_pred CCEEEEEEcCC-E-EEEEE--CCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEEcc
Q 000694 1070 GAVTALIYYKG-L-LCSGF--SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG----ESLLSGSADKTIGVWQMV 1141 (1349)
Q Consensus 1070 ~~Vt~Lafsdg-~-LaSGS--~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg----~~LaSGS~DGtIrVWDl~ 1141 (1349)
.+|..++|.|| . +.|.- .+|.++.=|. ..+..| .-|..+.|.|-+ ..|+.....+.|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 47888999776 3 44432 3344333222 224444 348999999853 356667778899999985
Q ss_pred C-----CeEEEEEEecCCC--CeE---E-ecCCCCEEEEEecCCeEEEEecCC---cceeeccCCC-eEEEEe-eCC-EE
Q 000694 1142 Q-----RKLELIEVIATKE--PIR---K-LDTYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKG-IKSMSV-VQG-KI 1204 (1349)
Q Consensus 1142 t-----g~~~~~~~~~h~~--~V~---s-Ls~~g~~LvsgS~DgtIkVWDl~~---~~~~~~~~~~-V~~La~-~dg-~L 1204 (1349)
- ++......-.... +|. | |.|....+.+-+....-.++++.. ..+.-....+ |.|..| .|| ++
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2 3333322222222 221 1 456666666665555444555542 2222223333 888888 555 44
Q ss_pred EE-EeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceE
Q 000694 1205 YI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY 1251 (1349)
Q Consensus 1205 lS-Gs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~ 1251 (1349)
+. .+..=.-++||-........ ....+|+. +..|.++...-+...
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~C-sfcPVFdv-~~~Icsi~AT~dsqV 216 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRC-SFCPVFDV-GGYICSIEATVDSQV 216 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhC-CcceeecC-CCceEEEEEeccceE
Confidence 43 44455667888765432221 11112222 346777665554433
No 426
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.40 E-value=78 Score=36.53 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhc---ch-hhhhhhhhcCCChh
Q 000694 572 LQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIYLIKPSPT 647 (1349)
Q Consensus 572 ~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~---~~-~aavl~yll~p~~~ 647 (1349)
.-|.-++-|+-.|-.+.++.+.+.+...|+.. ...+..+..|... -.+.-+..+|... +. +|.-.+.=|.+..+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 34566788999999999999999999999985 5566777776665 4677788888775 33 34444554444443
Q ss_pred hhhhh-cchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHH
Q 000694 648 EIKTL-ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE 726 (1349)
Q Consensus 648 q~~~~-~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee 726 (1349)
....+ ..++.+.+-+.... ... .=+-|++-+|-+|-.-.|. .|+.+- .++.++..+..|+..-
T Consensus 87 n~~~Ik~~i~~Vc~~~~s~~--lns------~~Q~agLrlL~nLtv~~~~----~~~l~~----~i~~ll~LL~~G~~~~ 150 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVSSP--LNS------EVQLAGLRLLTNLTVTNDY----HHMLAN----YIPDLLSLLSSGSEKT 150 (254)
T ss_pred hHHHHHHHHHHHHHHHhcCC--CCC------HHHHHHHHHHHccCCCcch----hhhHHh----hHHHHHHHHHcCChHH
Confidence 22222 23444444333211 111 1124677777777212221 234442 3556778888899999
Q ss_pred HHHHHHHHHHhhhccCcc-hhHHHhhcCcchhhHhhhcccchh-HHHHHHHHHHHhccCchhHHHHHHHhhhcCc
Q 000694 727 LISLATILVKCIQFDGQC-RKYLSEFTAVAPLACLLQSGEKRA-IMIALEFFHEILRIPRSSAIDLLQRIHKEGN 799 (1349)
Q Consensus 727 ~~~~~~il~~Ci~adg~c-r~~ia~~~~~~~~~~ll~~~~~~~-~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~ 799 (1349)
|..+..+|+ ++-.+... |..|... -+++|+.||++...++ -..++.|| ..+-..+|+++.
T Consensus 151 k~~vLk~L~-nLS~np~~~~~Ll~~q-~~~~~~~Lf~~~~~~~~l~~~l~~~-----------~ni~~~~~~~~~ 212 (254)
T PF04826_consen 151 KVQVLKVLV-NLSENPDMTRELLSAQ-VLSSFLSLFNSSESKENLLRVLTFF-----------ENINENIKKEAY 212 (254)
T ss_pred HHHHHHHHH-HhccCHHHHHHHHhcc-chhHHHHHHccCCccHHHHHHHHHH-----------HHHHHhhCcccc
Confidence 999988554 55555554 5555555 5889999999976554 44455554 334455666654
No 427
>PRK09687 putative lyase; Provisional
Probab=78.34 E-value=50 Score=38.56 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=63.2
Q ss_pred CcchhhHhhhcccchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhccc
Q 000694 753 AVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLE 832 (1349)
Q Consensus 753 ~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ 832 (1349)
...+++++|...+...|..| ...|..+. .-.+.-.+.-.++...+..|-.+|..|-|| +
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A---------------~~aL~~~~---~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l---g 82 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISS---------------IRVLQLRG---GQDVFRLAIELCSSKNPIERDIGADILSQL---G 82 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHH---------------HHHHHhcC---cchHHHHHHHHHhCCCHHHHHHHHHHHHhc---C
Confidence 34445555555555455444 33344443 333444445557888899999999999995 4
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 000694 833 NTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 872 (1349)
Q Consensus 833 ep~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l~ 872 (1349)
+|... +++|+..|...+.+..++.|+..++.+|-.++
T Consensus 83 ~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 83 MAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred CCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 44332 78999999888777668889998999876664
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.31 E-value=21 Score=40.14 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=55.1
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCceeEEE-----Eec-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 000694 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVW-----DVK-------EHRKAVTSFSLFEPGESLLSGSADKTIGVW 1138 (1349)
Q Consensus 1071 ~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~i~-----tL~-------gHss~VtsLafSpdg~~LaSGS~DGtIrVW 1138 (1349)
++..+...++++.+-+.+|.+++||+.+++..... .+. .....|..+.++.+|.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 55556667789999999999999999987642111 012 3557889999998888777765 5788999
Q ss_pred EccCCeEE
Q 000694 1139 QMVQRKLE 1146 (1349)
Q Consensus 1139 Dl~tg~~~ 1146 (1349)
+.+-+...
T Consensus 93 ~~~L~~W~ 100 (219)
T PF07569_consen 93 SPDLGCWI 100 (219)
T ss_pred ccccceeE
Confidence 88666543
No 429
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.11 E-value=1.8e+02 Score=34.91 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=96.1
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEecC-CCCeEE-ecCCCCEEEEEecCCeEEEEecC-CcceeeccCCC---e-EEE
Q 000694 1125 SLLSGSADKTIGVWQMVQRKLELIEVIAT-KEPIRK-LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG---I-KSM 1197 (1349)
Q Consensus 1125 ~LaSGS~DGtIrVWDl~tg~~~~~~~~~h-~~~V~s-Ls~~g~~LvsgS~DgtIkVWDl~-~~~~~~~~~~~---V-~~L 1197 (1349)
.++.+..||.|.-.|..++..+....... ...+.. +......+++++.++.+..+|.+ +...-...... + ...
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 45556778888888888877543222111 011111 11224558889999988888884 44333322222 1 111
Q ss_pred EeeCCEEEEEeCCCcEEEEEccCCccccc-cccc-cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 000694 1198 SVVQGKIYIGCMDSSIQELAVSNNVEREI-KAPF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 1275 (1349)
Q Consensus 1198 a~~dg~LlSGs~DGsI~IWDl~t~~~~~i-~~~l-k~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~t 1275 (1349)
.+.++.++.++.++.+...|..+++..-. .... ........++ ...+.+++...+. ++.+.-.|..+|.....
T Consensus 150 v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 150 VVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGY-DGILYALNAEDGTLKWS 224 (370)
T ss_pred EEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCC-cceEEEEEccCCcEeee
Confidence 12566777777788888888887753211 0000 0001111111 2222333322111 33566667767766554
Q ss_pred ecCCC----CCe---EEEEEec--CCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 000694 1276 APEKG----TTI---QAMAVVE--DFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1321 (1349)
Q Consensus 1276 l~gH~----~~V---tsLafSP--Dg~~LaSGS~DGtVrVWDl~tg~~l~sl~~h 1321 (1349)
.+.+. ..+ ..+...+ .+.-+..++.+|.+...|..+++.+.++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 32111 001 0110000 1222356667787888888899888877753
No 430
>PF05536 Neurochondrin: Neurochondrin
Probab=75.87 E-value=56 Score=41.81 Aligned_cols=280 Identities=15% Similarity=0.120 Sum_probs=165.7
Q ss_pred CcCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCc-----chhhhhhhcCCChhHHHHHHhh--cchhhh
Q 000694 564 KTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE-----SVIEDIKKKGLRLSDLATALKR--NVPEAA 636 (1349)
Q Consensus 564 ~~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~-----~~~~~~~~~d~~~~~~~~~lk~--~~~~aa 636 (1349)
.|.....+.+...|.-|.|++.+ .....+.++.||..+.++-. ..-+.+.++++.+......++. .|.=-.
T Consensus 129 ~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~ 206 (543)
T PF05536_consen 129 SPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLE 206 (543)
T ss_pred CcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 34555566677788889999888 77889999999999888655 2223344443333322222222 266667
Q ss_pred hhhhhcCCCh----hhhhhhcchhHHHHHHhcccccccccccccc--CchhhHHHHHHHHHh--cc-----ccccch-h-
Q 000694 637 ILIYLIKPSP----TEIKTLELLPTLVEVICTSKLYKGKLESVRL--TPPAASLMIIEVLVT--AF-----DYATNN-M- 701 (1349)
Q Consensus 637 vl~yll~p~~----~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~--~p~~aa~~~l~~ll~--~~-----d~~~~~-~- 701 (1349)
+|-++|.+.+ .-.....|++.+..-|.. ....++ .-+.+|+-+...|+. |. |...+. .
T Consensus 207 ~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~-------iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F 279 (543)
T PF05536_consen 207 FLSAFLPRSPILPLESPPSPKWLSDLRKGLRD-------ILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKF 279 (543)
T ss_pred HHHHhcCcCCccccccCChhhhHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccH
Confidence 7777887773 234566788777655543 011122 334566666777766 43 221011 1
Q ss_pred --hHhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcc-hhhHhhhcccchhHHHHHHHHHH
Q 000694 702 --HLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVA-PLACLLQSGEKRAIMIALEFFHE 778 (1349)
Q Consensus 702 --~~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~-~~~~ll~~~~~~~~~~a~~~l~E 778 (1349)
-+..+....+=..|=..++..+.++.......|..|-.-=...-+|+++..+.. ..++ --.
T Consensus 280 ~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~----------------~~~ 343 (543)
T PF05536_consen 280 LLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLD----------------PDT 343 (543)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC----------------HHH
Confidence 111111222211221223346888888888889998777667777777755422 1122 223
Q ss_pred HhccCc------hhHHHHHHHhhhc------CchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCCCCcc------
Q 000694 779 ILRIPR------SSAIDLLQRIHKE------GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVF------ 840 (1349)
Q Consensus 779 Ll~l~R------~~~~~~l~~i~~~------g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~~s~y------ 840 (1349)
++++.+ +.+.++|+..+++ =.+.+..+|=.||-..+-+.+.-+..|| |.|.+--+.+-+
T Consensus 344 l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll---~~ll~~~~~~~~~~~~~~ 420 (543)
T PF05536_consen 344 LLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVYGLL---PFLLSLYRESFQEAEPAR 420 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHHHHH---HHHHHHHhhhhhhccccc
Confidence 334444 2355777777775 2466788888999999988888888776 444333333322
Q ss_pred --hHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCcc
Q 000694 841 --TEEAMQVILKAVASEESSTMQLLSSFILSNIGGT 874 (1349)
Q Consensus 841 --reeAv~~i~~al~~~~~~~~q~~~~~al~~l~g~ 874 (1349)
+=+++.-++=+|.+= .+....+++++..||+
T Consensus 421 ~~~~d~~r~lLPaL~~l---t~e~~gr~~l~~~~g~ 453 (543)
T PF05536_consen 421 EGPLDFLRFLLPALCHL---TAEEEGRKILLSNGGW 453 (543)
T ss_pred ccchhHHHHHHHHHhhh---hccHHHHHHHHhCCcH
Confidence 346777888888665 4456678888888875
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.04 E-value=89 Score=35.02 Aligned_cols=169 Identities=12% Similarity=0.065 Sum_probs=89.1
Q ss_pred CCCEEEEEeC--CCeEEEEEccCCeEEEEEEecCCCCeE--EecCCCCEEEEEe-cCCeEEEEecCC--cceeeccCCCe
Q 000694 1122 PGESLLSGSA--DKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSSR--TLKDIYRSKGI 1194 (1349)
Q Consensus 1122 dg~~LaSGS~--DGtIrVWDl~tg~~~~~~~~~h~~~V~--sLs~~g~~LvsgS-~DgtIkVWDl~~--~~~~~~~~~~V 1194 (1349)
+|.++.+.|. ...|++||+.+|+......... ..+. .+..-++.++..+ .+|.-..+|.+. ....+.....-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4455555553 3479999999998765544331 1121 1333455555444 456666777652 22222222223
Q ss_pred EEEEeeCCEEEEEeCCCcEEEEEccCCccc-cccccccccccCCCC---eEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 000694 1195 KSMSVVQGKIYIGCMDSSIQELAVSNNVER-EIKAPFKSWRLQSKP---INSLVVYKDWLYSASSSVEGSNIKEWRRHRK 1270 (1349)
Q Consensus 1195 ~~La~~dg~LlSGs~DGsI~IWDl~t~~~~-~i~~~lk~~~~h~~~---I~sL~~~pd~i~las~S~dDgtIrIWDl~t~ 1270 (1349)
..++..+..++.+....+++.-|..+.... ++ ....++.+ ++.+.+-.+.++.-.+- ...|-..|.++|
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v-----~VT~~g~pv~~LNELE~VdG~lyANVw~--t~~I~rI~p~sG 206 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTV-----QVTDDGVPVSKLNELEWVDGELYANVWQ--TTRIARIDPDSG 206 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceE-----EEEECCeecccccceeeeccEEEEeeee--ecceEEEcCCCC
Confidence 444445556777666677777776665321 11 00112223 33445555555544443 224555666666
Q ss_pred CeEEEec------------CCCCCeEEEEEecCC-CEEEEE
Q 000694 1271 PQISIAP------------EKGTTIQAMAVVEDF-IYLNYN 1298 (1349)
Q Consensus 1271 ~li~tl~------------gH~~~VtsLafSPDg-~~LaSG 1298 (1349)
+++..+. .|..-.+.+++.|++ ++++||
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6654432 244567889999877 556665
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.66 E-value=6.6 Score=50.99 Aligned_cols=213 Identities=12% Similarity=0.166 Sum_probs=113.9
Q ss_pred CCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcc--CCeEEEEEEe----cCCCCe---
Q 000694 1088 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMV--QRKLELIEVI----ATKEPI--- 1157 (1349)
Q Consensus 1088 DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg-~~LaSGS~DGtIrVWDl~--tg~~~~~~~~----~h~~~V--- 1157 (1349)
.+-|++-+..+.-. .-..++|..+.|-.+.|-... ..+. -.-|.+.|||++ .|+..+.... .....+
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 34566666554210 001236677788888884211 1121 223678899875 3554332221 112222
Q ss_pred -EE-ecCCCCEEEEEecCCeEEEEecCCcceeeccCCC--eEEEE-----------e-eCCEEE-EEeCCCcEEEEEccC
Q 000694 1158 -RK-LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG--IKSMS-----------V-VQGKIY-IGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1158 -~s-Ls~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~--V~~La-----------~-~dg~Ll-SGs~DGsI~IWDl~t 1220 (1349)
+| +..+..++..+-.++.+++..+++....++.+|+ +..++ + +||+++ .++.||.+++|.+.-
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 22 3456677888888999999888865544444433 22222 2 667655 478888888887642
Q ss_pred -CccccccccccccccCC-CCeEEEEEcCC---------ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 000694 1221 -NVEREIKAPFKSWRLQS-KPINSLVVYKD---------WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 1289 (1349)
Q Consensus 1221 -~~~~~i~~~lk~~~~h~-~~I~sL~~~pd---------~i~las~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafS 1289 (1349)
++.. ......|..|. .+-.|.-++.. +.+.++++..+..+++|.....+|. +..--..|..+. -
T Consensus 267 ~g~~~--~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p 341 (1283)
T KOG1916|consen 267 TGKIV--HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-P 341 (1283)
T ss_pred ecccc--HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-C
Confidence 2211 11234566664 44444445533 4556666656677999987766655 111122233333 2
Q ss_pred cCCC------------EEEEEeCCCcEEEEE
Q 000694 1290 EDFI------------YLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1290 PDg~------------~LaSGS~DGtVrVWD 1308 (1349)
+||. .+++.+-||+|.+|-
T Consensus 342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred CCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 2222 234456688899993
No 433
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.65 E-value=2e+02 Score=34.61 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred EEcCCEEEEEECCCcEEEEECCCCceeEEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecC
Q 000694 1076 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH--RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 1153 (1349)
Q Consensus 1076 afsdg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gH--ss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h 1153 (1349)
+..++.++.+..||.|.-.|..++.. +.....- ...+.+-.+..+|+ ++.++.+|.+...|..+|+.........
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~--~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLV--KWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcE--EecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 44688899999999998889888764 2222111 12222222333665 7778889999999998888776544433
Q ss_pred C-CCeEEecCCCCEEEEEecCCeEEEEecC-Ccceee------ccCCCeEEEEeeCCEEEEEeC--CCcEEEEEccCCc
Q 000694 1154 K-EPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDI------YRSKGIKSMSVVQGKIYIGCM--DSSIQELAVSNNV 1222 (1349)
Q Consensus 1154 ~-~~V~sLs~~g~~LvsgS~DgtIkVWDl~-~~~~~~------~~~~~V~~La~~dg~LlSGs~--DGsI~IWDl~t~~ 1222 (1349)
. ............++.++.++.+...|.. +...-. ............++.++.++. ++.+.-.|..++.
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 0 0000111223333333344555444443 111100 000000111135677777766 6667777777774
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.35 E-value=57 Score=43.69 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEEcCCEEEEEECCCcEEEEECCCCceeE-EEE------e--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 000694 1074 ALIYYKGLLCSGFSDGSIKMWDIKKQSAML-VWD------V--KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 1144 (1349)
Q Consensus 1074 ~Lafsdg~LaSGS~DGtIrVWDl~tg~~~~-i~t------L--~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~ 1144 (1349)
|++-.++.|..|+.||.+.+|.+....... ... + .-++.+|+-+...+.-..+++-+ |+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 666678899999999999999986532110 000 1 11356777777766666555444 6778888776543
No 435
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=74.30 E-value=25 Score=33.98 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=60.5
Q ss_pred hHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhccC
Q 000694 709 PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 783 (1349)
Q Consensus 709 ~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l~ 783 (1349)
.++++.|+..+..++.+-|..++..|-......-.|+..+.+.--...++++|...+...+..|+..|..|..-.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 446667888888888888888888877666555677777777777888899999999999999999999998654
No 436
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=73.85 E-value=2.1e+02 Score=34.58 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=30.3
Q ss_pred ecCCCEEEEEeCCC----------------------cEEEEECCCCcEE--EEEeCC-CCeEEEEEcCCEEEEEECC
Q 000694 1289 VEDFIYLNYNSSAS----------------------SLQIWLRGTQQKV--GRISAG-SKITSLLTANDIVLCGTET 1340 (1349)
Q Consensus 1289 SPDg~~LaSGS~DG----------------------tVrVWDl~tg~~l--~sl~~h-s~VtsLs~dg~~LaSGS~D 1340 (1349)
..++++++.|+.+. .+.+||..+.+.. ..+... ....++.+++++++.|+..
T Consensus 277 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 277 YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 35677888887541 2457777765432 222211 1134666788888888864
No 437
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.33 E-value=84 Score=39.84 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=57.7
Q ss_pred HhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhcc
Q 000694 703 LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRI 782 (1349)
Q Consensus 703 ~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l 782 (1349)
+..+....++..++.++..++.+-...|+.+|.+...-...+...+..+. ..-+..++...++..|..+.+++.++.+.
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 33445677888899999888998888888888877765555543322222 44555566555778899999999988777
Q ss_pred Cc
Q 000694 783 PR 784 (1349)
Q Consensus 783 ~R 784 (1349)
+.
T Consensus 191 S~ 192 (503)
T PF10508_consen 191 SP 192 (503)
T ss_pred CH
Confidence 65
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.24 E-value=40 Score=45.37 Aligned_cols=124 Identities=7% Similarity=-0.031 Sum_probs=73.7
Q ss_pred EeCCCcEEEEEccCCccccc--ccccc---ccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecCCC
Q 000694 1207 GCMDSSIQELAVSNNVEREI--KAPFK---SWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKG 1280 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t~~~~~i--~~~lk---~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~-~li~tl~gH~ 1280 (1349)
.+.+-.|..||+++...... ..+++ ..........++.|+|...........|+.|++..+... +.+..+. -+
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t 198 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VT 198 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cc
Confidence 44566889999987632211 11111 111123334556677664433333334777888776432 2222322 45
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----CCCeEEEEEcCC
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-----GSKITSLLTAND 1332 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~-----hs~VtsLs~dg~ 1332 (1349)
...++++|+|.|+.++.|-..|++.-|.. .++....+.. ..+|.+|+|-+.
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecc
Confidence 57899999999999999999999988853 3344444443 345999999544
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=73.07 E-value=2.1e+02 Score=34.19 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=80.0
Q ss_pred CeEEEEe-eCCEEEEEeCCCcEEEEEccCC-ccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 000694 1193 GIKSMSV-VQGKIYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 1270 (1349)
Q Consensus 1193 ~V~~La~-~dg~LlSGs~DGsI~IWDl~t~-~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~ 1270 (1349)
.+.++.+ +++.++..+..|.+..- ...+ +.-.. .-......++.+.+.+++...+.+ .+|.+.+=..+.+
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~-----~~~~~~~~l~~i~~~~~g~~~~vg--~~G~~~~~s~d~G 245 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTP-----HQRNSSRRLQSMGFQPDGNLWMLA--RGGQIRFNDPDDL 245 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEE-----eeCCCcccceeeeEcCCCCEEEEe--cCCEEEEccCCCC
Confidence 3677777 77777777777766532 1111 10000 011234567888888776655544 2555543233443
Q ss_pred CeEEEecC----CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC----CCCeEEEEE-cCCEEEEEECCC
Q 000694 1271 PQISIAPE----KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA----GSKITSLLT-ANDIVLCGTETG 1341 (1349)
Q Consensus 1271 ~li~tl~g----H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~----hs~VtsLs~-dg~~LaSGS~DG 1341 (1349)
..-..... ....+.++.+.|++..+++| .+|.|. .....|+.-..... ....+.+.+ +++..+..+..|
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 32222111 12357889999988766655 567554 44444443333321 123566665 566667778889
Q ss_pred cEEEeeC
Q 000694 1342 LIKGWIP 1348 (1349)
Q Consensus 1342 tIrIWD~ 1348 (1349)
.|--|+.
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 9888764
No 440
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=72.47 E-value=2.1e+02 Score=33.93 Aligned_cols=229 Identities=12% Similarity=0.015 Sum_probs=103.7
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCc-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1071 AVTALIYYKGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1071 ~Vt~Lafsdg~LaSGS~DGtIrVWDl~tg~-~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
...+|.|.++.....+..|.| +...+.|+ ...+..-..-.+....+....++..++ ++..|.|.. ..+.|+.-...
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~ 139 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAV 139 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEE
T ss_pred eEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEc
Confidence 356777865543334455543 33444443 222211011122333344434443333 344554322 22334322233
Q ss_pred EecCCCCeEEec--CCCCEEEEEecCCeEEEEecCCc---ceeeccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCcc
Q 000694 1150 VIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT---LKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVE 1223 (1349)
Q Consensus 1150 ~~~h~~~V~sLs--~~g~~LvsgS~DgtIkVWDl~~~---~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~ 1223 (1349)
.......+..+. .++..++++.....+.-||-... .........|..+.| +++.++.....|.|++=+.....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG- 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc-
Confidence 334445566643 67777777766666778887632 222233456999999 88888888899999877722211
Q ss_pred ccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec---CCCCCeEEEEEecCCCEEEEEeC
Q 000694 1224 REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNSS 1300 (1349)
Q Consensus 1224 ~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~---gH~~~VtsLafSPDg~~LaSGS~ 1300 (1349)
..-..+.......+..+..+++.++....++++ .| ..+.....|+.-..-. .-...++.+.|.++.+-++.| .
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SG-TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES--TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC--Cc-cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 000001111122345578889988766555543 33 3344445554433332 224568889998766666655 5
Q ss_pred CCcEEEE
Q 000694 1301 ASSLQIW 1307 (1349)
Q Consensus 1301 DGtVrVW 1307 (1349)
+|.+-=|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7876544
No 441
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.87 E-value=2.3e+02 Score=37.94 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=45.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCcEE-------------EEEEcC--CCCEEEEEeC----------CC
Q 000694 1079 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-------------SFSLFE--PGESLLSGSA----------DK 1133 (1349)
Q Consensus 1079 dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~Vt-------------sLafSp--dg~~LaSGS~----------DG 1133 (1349)
+++|+.++.||.+.-.|..+|+. ...+. ..+.|. .+.-.| .+..++.|+. +|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~--~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKL--CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCE--EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 45889999999999999999875 44432 222221 011111 1345666643 68
Q ss_pred eEEEEEccCCeEEEEEEe
Q 000694 1134 TIGVWQMVQRKLELIEVI 1151 (1349)
Q Consensus 1134 tIrVWDl~tg~~~~~~~~ 1151 (1349)
.|+-+|..+|+.......
T Consensus 337 ~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEEEECCCCcEeeEEec
Confidence 999999999998765543
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=46 Score=45.57 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=52.2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCeEEe---cC-------CCCEEEEEecCCeEEEEecC--
Q 000694 1115 TSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL---DT-------YGKTIFASTQGHRMKVIDSS-- 1182 (1349)
Q Consensus 1115 tsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sL---s~-------~g~~LvsgS~DgtIkVWDl~-- 1182 (1349)
+.+-+-|.=.+... +.|+.+.+|+.+++.-. ....+....|..+ .| .=+++++.+.--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~-~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI-TIDNNLFLWNYESDNEL-AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEE-EeCCeEEEEEcCCCCcc-ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 34444444333332 34788999999884322 2223333334332 22 22344444444455554432
Q ss_pred ---Cccee------e-ccCCCeEEEEe-eCCEEEEEeCCCcEEEE
Q 000694 1183 ---RTLKD------I-YRSKGIKSMSV-VQGKIYIGCMDSSIQEL 1216 (1349)
Q Consensus 1183 ---~~~~~------~-~~~~~V~~La~-~dg~LlSGs~DGsI~IW 1216 (1349)
+.... + ..+..|.|+.. .+|+++-||.||.|+-.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl 204 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYEL 204 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEE
Confidence 11111 1 12344888887 89999999999965543
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=68.80 E-value=86 Score=41.15 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=68.8
Q ss_pred CCCeEEEEe---e-CCEEEEEeCCCcEEEEEccCCc----c-----------ccccccccccccCCCCeEEEEEc--CCc
Q 000694 1191 SKGIKSMSV---V-QGKIYIGCMDSSIQELAVSNNV----E-----------REIKAPFKSWRLQSKPINSLVVY--KDW 1249 (1349)
Q Consensus 1191 ~~~V~~La~---~-dg~LlSGs~DGsI~IWDl~t~~----~-----------~~i~~~lk~~~~h~~~I~sL~~~--pd~ 1249 (1349)
.|.|+.+.+ - +..|+++++||.|.+|.+.+-. . ..+ .|. ....-+.....+++| ...
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i-~P~-f~~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKI-KPF-FHLRVGASAWGLDIHDYKKS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccC-CCC-eEeecCCceeEEEEEecCcc
Confidence 345666655 2 2345578999999999773310 0 001 111 111124578889998 666
Q ss_pred eEEEEEecCCCeEEEEECCC--CC-eEEEecCCCCCeEEEEEecCC-----C-EEEEEeCCCcEEEEEC
Q 000694 1250 LYSASSSVEGSNIKEWRRHR--KP-QISIAPEKGTTIQAMAVVEDF-----I-YLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1250 i~las~S~dDgtIrIWDl~t--~~-li~tl~gH~~~VtsLafSPDg-----~-~LaSGS~DGtVrVWDl 1309 (1349)
.+++.++ ....|.||-... .+ ....-..|...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 178 rlIAVSs-Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSS-NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEec-CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6666654 345677765433 11 111111366789999997643 2 7888899999999876
No 444
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=68.17 E-value=1.9e+02 Score=33.94 Aligned_cols=108 Identities=6% Similarity=-0.001 Sum_probs=51.6
Q ss_pred EEEEcCCEEEEEECCC-----cEEEEECCCCcee-EEEEe---ccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEE
Q 000694 1074 ALIYYKGLLCSGFSDG-----SIKMWDIKKQSAM-LVWDV---KEHRKAVTSFSLFEPGESLLSGSA-----DKTIGVWQ 1139 (1349)
Q Consensus 1074 ~Lafsdg~LaSGS~DG-----tIrVWDl~tg~~~-~i~tL---~gHss~VtsLafSpdg~~LaSGS~-----DGtIrVWD 1139 (1349)
++++.+..++.|+.++ .+..+|+.+.+.. ....+ ....... +++. -++...+.|+. ...+..||
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 3444455667777653 5667777765531 11111 1111111 1222 24566666664 24678889
Q ss_pred ccCCeEEEEE-EecCC-CCeEEecCCCCEEEEEecCC----eEEEEecCC
Q 000694 1140 MVQRKLELIE-VIATK-EPIRKLDTYGKTIFASTQGH----RMKVIDSSR 1183 (1349)
Q Consensus 1140 l~tg~~~~~~-~~~h~-~~V~sLs~~g~~LvsgS~Dg----tIkVWDl~~ 1183 (1349)
+.+.+..... ..... ........++...+.|+.++ .+.+||...
T Consensus 146 ~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 146 LETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 8877654321 11111 11111234556666666553 245777763
No 445
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.98 E-value=28 Score=44.35 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=43.1
Q ss_pred cCCEEEEEECCCcEEEEECCC----CceeEEEEecc--------------------CCCcEEEEEEcC----CCCEEEEE
Q 000694 1078 YKGLLCSGFSDGSIKMWDIKK----QSAMLVWDVKE--------------------HRKAVTSFSLFE----PGESLLSG 1129 (1349)
Q Consensus 1078 sdg~LaSGS~DGtIrVWDl~t----g~~~~i~tL~g--------------------Hss~VtsLafSp----dg~~LaSG 1129 (1349)
+.+.++.+..||.+....... +.......+.. ..+.+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455788888888887776653 11101111111 123466677766 77899999
Q ss_pred eCCCeEEEEEccCCeEEEE
Q 000694 1130 SADKTIGVWQMVQRKLELI 1148 (1349)
Q Consensus 1130 S~DGtIrVWDl~tg~~~~~ 1148 (1349)
+.|+++|+||+.+++++..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp ETTSEEEEEETTTTCEEEE
T ss_pred eCCCeEEEEECCCCeEEEE
Confidence 9999999999999998543
No 446
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=67.83 E-value=2.5e+02 Score=33.02 Aligned_cols=227 Identities=16% Similarity=0.058 Sum_probs=112.5
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEccCCeE--------------
Q 000694 1081 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQRKL-------------- 1145 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS-~DGtIrVWDl~tg~~-------------- 1145 (1349)
+|+.|..+|...+. .........+. .+..+|+++...+..+.|++-+ ....++++++..-..
T Consensus 15 ~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 15 WLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred EEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 79999999976655 54421112322 2567899999998888776544 344599999843211
Q ss_pred -EEEEEecCCCCeEE--ec-CCCCEEEEEecCCeEEEEecCCcceee-----------ccCCCeEEEEe----eCCEEEE
Q 000694 1146 -ELIEVIATKEPIRK--LD-TYGKTIFASTQGHRMKVIDSSRTLKDI-----------YRSKGIKSMSV----VQGKIYI 1206 (1349)
Q Consensus 1146 -~~~~~~~h~~~V~s--Ls-~~g~~LvsgS~DgtIkVWDl~~~~~~~-----------~~~~~V~~La~----~dg~LlS 1206 (1349)
... ...+...... +. ......++++...+|.++.+.+....+ .....+..+.. ....+..
T Consensus 92 ~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 92 NVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred cceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 011 1122222222 22 222234555566677776554321111 11112222222 2346666
Q ss_pred EeCCCcEEEEEccC--CccccccccccccccCC-CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE--EEecCCCC
Q 000694 1207 GCMDSSIQELAVSN--NVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI--SIAPEKGT 1281 (1349)
Q Consensus 1207 Gs~DGsI~IWDl~t--~~~~~i~~~lk~~~~h~-~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li--~tl~gH~~ 1281 (1349)
|+..+...++++.. ............ .... .++....... +.++++. +....+-|....+.. ..+. -..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~-~~~~~~p~~i~~l~~-~e~Llc~---~~~~v~Vn~~G~~~~r~~~l~-w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLS-EETSLKPISVVQVPR-DEFLLCY---DEFGVFVNLYGKRRSRNPILH-WEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccc-cccccCceEEEEECC-CeEEEEE---CcEEEEEeCCCCccccceEEE-cCC
Confidence 76653344555533 110000000000 0111 3444444444 4566655 445555565431111 1111 233
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 1320 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~ 1320 (1349)
.+.++++. ..+++.-+ +..|.||++.+++.++++..
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 45566666 35666555 45599999999999998875
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=67.71 E-value=2.7e+02 Score=33.18 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=51.4
Q ss_pred CCeEEEEECCCCCeEEEec--CCCCCeEEEEEec------CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------C
Q 000694 1259 GSNIKEWRRHRKPQISIAP--EKGTTIQAMAVVE------DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-------K 1323 (1349)
Q Consensus 1259 DgtIrIWDl~t~~li~tl~--gH~~~VtsLafSP------Dg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs-------~ 1323 (1349)
-|.|-+||.. +..++.+. +.-...+.|+..| .|.+|+.--.||+|..||..+++.+..+.... .
T Consensus 221 ~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 221 LGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 3688999976 55666653 2234667787755 56777777789999999999999999988632 2
Q ss_pred eEEEEE
Q 000694 1324 ITSLLT 1329 (1349)
Q Consensus 1324 VtsLs~ 1329 (1349)
.+.|.|
T Consensus 300 LWgL~f 305 (336)
T TIGR03118 300 LWSLTF 305 (336)
T ss_pred eEEeee
Confidence 477887
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.76 E-value=3.4e+02 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEE
Q 000694 1113 AVTSFSLFEPGESLLSGSADKTIGV 1137 (1349)
Q Consensus 1113 ~VtsLafSpdg~~LaSGS~DGtIrV 1137 (1349)
.|..|.++|+|++|+..|..|.+.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE
Confidence 5888899999999998887664433
No 449
>PLN02153 epithiospecifier protein
Probab=66.33 E-value=2.8e+02 Score=32.94 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=35.8
Q ss_pred cCCEEEEEECC-------CcEEEEECCCCceeEEEEecc-CCC---cEEEEEEcCCCCEEEEEeCC-----CeEEEEEcc
Q 000694 1078 YKGLLCSGFSD-------GSIKMWDIKKQSAMLVWDVKE-HRK---AVTSFSLFEPGESLLSGSAD-----KTIGVWQMV 1141 (1349)
Q Consensus 1078 sdg~LaSGS~D-------GtIrVWDl~tg~~~~i~tL~g-Hss---~VtsLafSpdg~~LaSGS~D-----GtIrVWDl~ 1141 (1349)
.+..++.|+.+ ..+.+||..+.+...+..... ... ....+.+ +++.++.||.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34455666653 357889988876543322111 010 1222333 45566667653 357788988
Q ss_pred CCeEE
Q 000694 1142 QRKLE 1146 (1349)
Q Consensus 1142 tg~~~ 1146 (1349)
+.+..
T Consensus 110 t~~W~ 114 (341)
T PLN02153 110 KNEWT 114 (341)
T ss_pred CCEEE
Confidence 77654
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.20 E-value=29 Score=39.06 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 1270 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~ 1270 (1349)
....|..+.+..+|..+++.+ +|..+.||..-+
T Consensus 65 ~~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~~L~ 97 (219)
T PF07569_consen 65 SSPNITSCSLTSNGVPIVTLS--NGDSYSYSPDLG 97 (219)
T ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCEEEeccccc
Confidence 346677888888888777765 456788886544
No 451
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=65.00 E-value=39 Score=31.21 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=57.0
Q ss_pred chhhHhh-hcccchhHHHHHHHHHHHhccCchhHHHHHHHhhhcCchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccC
Q 000694 755 APLACLL-QSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN 833 (1349)
Q Consensus 755 ~~~~~ll-~~~~~~~~~~a~~~l~ELl~l~R~~~~~~l~~i~~~g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~e 833 (1349)
..+++.| ...+...|..|+..|.++ . .-.....|+..|+..-+.-|--++.-|-++.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~---------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---G---------------DPEAIPALIELLKDEDPMVRRAAARALGRIG---- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---T---------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---C---------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 3566766 557777777776666622 1 2233555555556666666666666665542
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000694 834 TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 868 (1349)
Q Consensus 834 p~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al 868 (1349)
.+++++.|.+.|....+..++..|+.||
T Consensus 60 -------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 5889999999999988878899888887
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=63.44 E-value=3.2e+02 Score=32.56 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=36.8
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCCC---eEEEE--------EcCCEEEEEECCCcEEEeeC
Q 000694 1296 NYNSSASSLQIWLRGTQQKVGRISAGSK---ITSLL--------TANDIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1296 aSGS~DGtVrVWDl~tg~~l~sl~~hs~---VtsLs--------~dg~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|..-|.|-+||. .|+.++++...+. .+.|+ ++|++|+----||+|..+|+
T Consensus 216 v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 216 VAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred ccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 33444578999996 5788888865433 33443 25778888778999999996
No 453
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=63.44 E-value=2.7e+02 Score=31.84 Aligned_cols=183 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred EecCCCCEEEEEe---cCCeEEEEecCCcceeeccCCCeEEEEe-eCCEEEE-EeCCCcEEEE-EccCCccccccccccc
Q 000694 1159 KLDTYGKTIFAST---QGHRMKVIDSSRTLKDIYRSKGIKSMSV-VQGKIYI-GCMDSSIQEL-AVSNNVEREIKAPFKS 1232 (1349)
Q Consensus 1159 sLs~~g~~LvsgS---~DgtIkVWDl~~~~~~~~~~~~V~~La~-~dg~LlS-Gs~DGsI~IW-Dl~t~~~~~i~~~lk~ 1232 (1349)
.+++++..++... ....+.++...+..........+..-.| +++.+++ ...+...+++ +..++...........
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~ 109 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG 109 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccc
Q ss_pred cccCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEEC---CCC------CeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000694 1233 WRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRR---HRK------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1301 (1349)
Q Consensus 1233 ~~~h~~~I~sL~~~pd~i~las~S--~dDgtIrIWDl---~t~------~li~tl~gH~~~VtsLafSPDg~~LaSGS~D 1301 (1349)
... .|..+.++|++..++... .+++.|.+--+ ..+ ............+.+++|.+++.+++.+...
T Consensus 110 ~~~---~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 110 LRG---RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred cCC---ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Q ss_pred Cc----EEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCcEE
Q 000694 1302 SS----LQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIK 1344 (1349)
Q Consensus 1302 Gt----VrVWDl~tg~~l~sl~~hs~VtsLs~dg~~LaSGS~DGtIr 1344 (1349)
+. ...-|-...+.+........+.++.-+...++..+.++..+
T Consensus 187 ~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~~~ 233 (253)
T PF10647_consen 187 GGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGGVLQ 233 (253)
T ss_pred CCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCcEEE
No 454
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.75 E-value=90 Score=37.46 Aligned_cols=199 Identities=22% Similarity=0.236 Sum_probs=123.1
Q ss_pred HHHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhc---c----hhhhhhhhhcCCChhhhhhhc-
Q 000694 582 TAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---V----PEAAILIYLIKPSPTEIKTLE- 653 (1349)
Q Consensus 582 e~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~---~----~~aavl~yll~p~~~q~~~~~- 653 (1349)
.=|-+||+..|++-+--+|..|-+..|.-++. ... -.+-.|+.|+|.| + ..|--+|-.-+-.-+-+...+
T Consensus 173 trLakskdirvqrnatgaLlnmThs~EnRr~L-V~a-G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 173 TRLAKSKDIRVQRNATGALLNMTHSRENRRVL-VHA-GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred HhhcccchhhHHHHHHHHHHHhhhhhhhhhhh-hcc-CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 34789999999999999999999887765554 444 3577888899887 1 123333444444445566677
Q ss_pred -chhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhcCChHHHHHHHH
Q 000694 654 -LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLAT 732 (1349)
Q Consensus 654 -~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~ 732 (1349)
+||.|+.....++... +| .|+ .-|..| +.|+.-+.+..-| |+ |+-++..++. ..---+. +
T Consensus 251 ~lv~~Lv~Lmd~~s~kv------kc---qA~-lALrnl--asdt~Yq~eiv~a-g~---lP~lv~Llqs-~~~plil-a- 311 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKV------KC---QAG-LALRNL--ASDTEYQREIVEA-GS---LPLLVELLQS-PMGPLIL-A- 311 (550)
T ss_pred chHHHHHHHHhCCChHH------HH---HHH-HHHhhh--cccchhhhHHHhc-CC---chHHHHHHhC-cchhHHH-H-
Confidence 9999999998755321 11 122 224555 5555444444444 22 3345555542 2221121 1
Q ss_pred HHHHhhhc---cCcchhHHHhhcCcchhhHhhhcccch-hHHHHHHHHHHHhccCc--------hhHHHHHHHhhhcCch
Q 000694 733 ILVKCIQF---DGQCRKYLSEFTAVAPLACLLQSGEKR-AIMIALEFFHEILRIPR--------SSAIDLLQRIHKEGNI 800 (1349)
Q Consensus 733 il~~Ci~a---dg~cr~~ia~~~~~~~~~~ll~~~~~~-~~~~a~~~l~ELl~l~R--------~~~~~~l~~i~~~g~~ 800 (1349)
=+-|||- .--=-..|++.-=+.|+++||.-++.. ..+.|+.-|-.|---.| +-+++.|..+--.|++
T Consensus 312 -sVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv 390 (550)
T KOG4224|consen 312 -SVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV 390 (550)
T ss_pred -HHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh
Confidence 2356632 111223567777788999999997766 88999999999987554 2366666666666665
Q ss_pred hH
Q 000694 801 NI 802 (1349)
Q Consensus 801 ~~ 802 (1349)
+.
T Consensus 391 sv 392 (550)
T KOG4224|consen 391 SV 392 (550)
T ss_pred hH
Confidence 44
No 455
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=62.28 E-value=3.3e+02 Score=32.66 Aligned_cols=157 Identities=9% Similarity=0.056 Sum_probs=80.7
Q ss_pred EEEEECCCCceeEEEEe---ccCCCcEEEEEEcCCCCEEE--EEeCCC---eEEEEEccCCeEEEEEEecCCCCeE----
Q 000694 1091 IKMWDIKKQSAMLVWDV---KEHRKAVTSFSLFEPGESLL--SGSADK---TIGVWQMVQRKLELIEVIATKEPIR---- 1158 (1349)
Q Consensus 1091 IrVWDl~tg~~~~i~tL---~gHss~VtsLafSpdg~~La--SGS~DG---tIrVWDl~tg~~~~~~~~~h~~~V~---- 1158 (1349)
+.|+|+.+++...+... ..-...+..+.|.+++..|+ ..+.+. .+.+.|..++.............|.
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 56789988775333322 23456789999999998444 333333 4556788777654333333333331
Q ss_pred -Eec-CCCC-EEEEEecCC--eEEEEecCCcceeecc-CC-CeEEEE-e-e-CCEEE-EEeC----CCcEEEEEcc-CCc
Q 000694 1159 -KLD-TYGK-TIFASTQGH--RMKVIDSSRTLKDIYR-SK-GIKSMS-V-V-QGKIY-IGCM----DSSIQELAVS-NNV 1222 (1349)
Q Consensus 1159 -sLs-~~g~-~LvsgS~Dg--tIkVWDl~~~~~~~~~-~~-~V~~La-~-~-dg~Ll-SGs~----DGsI~IWDl~-t~~ 1222 (1349)
.+. +++. .+.....+| .|.+++..+......+ +. .|..+. + . ++.++ ++.. ...++..++. .+.
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 122 3444 455555666 4666666654433333 22 265544 3 3 34444 4544 2356555666 443
Q ss_pred cccccccccccccCCCCeEEEEEcCCceEEEE
Q 000694 1223 EREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 1254 (1349)
Q Consensus 1223 ~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las 1254 (1349)
...+ ......-..+.++|++.+++.
T Consensus 320 ~~~L-------T~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 320 PKCL-------TCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEES-------STTSSTTEEEEE-TTSSEEEE
T ss_pred eEec-------cCCCCCceEEEECCCCCEEEE
Confidence 3222 111111167888888776654
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=61.79 E-value=3.4e+02 Score=32.41 Aligned_cols=110 Identities=9% Similarity=0.015 Sum_probs=59.2
Q ss_pred CCeEEEEe-eCCEEEEEeCCCcEEEEEccCCcccc-ccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 000694 1192 KGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVERE-IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 1269 (1349)
Q Consensus 1192 ~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~-i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t 1269 (1349)
..+.++.+ +++.++..+..|.+++=....+..-+ ...+. ......+..+.+++++...+.+ .+|.+. .....
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~---~~~~~~l~~v~~~~~~~~~~~G--~~G~v~-~S~d~ 288 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPE---ITNGYGYLDLAYRTPGEIWAGG--GNGTLL-VSKDG 288 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCc---cccccceeeEEEcCCCCEEEEc--CCCeEE-EeCCC
Confidence 44788887 77877777777877532233332111 10000 0012346778888776555543 244443 34444
Q ss_pred CCeEEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000694 1270 KPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1308 (1349)
Q Consensus 1270 ~~li~tl~---gH~~~VtsLafSPDg~~LaSGS~DGtVrVWD 1308 (1349)
++.-.... +-....+.+.|..++..+++| ..|.|--|+
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 44333332 222357788888777776655 578877664
No 457
>PRK13616 lipoprotein LpqB; Provisional
Probab=61.52 E-value=1.1e+02 Score=39.67 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=49.2
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE---EECCCCcE-E---EEEeC--CCCeEEEEEc-
Q 000694 1261 NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI---WLRGTQQK-V---GRISA--GSKITSLLTA- 1330 (1349)
Q Consensus 1261 tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrV---WDl~tg~~-l---~sl~~--hs~VtsLs~d- 1330 (1349)
.+.+.++..+.... .....|..+.|||||..++... +|.|.| -....|.. + ..+.. ...+.++.|.
T Consensus 431 ql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 431 QLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred eEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 44444555444332 2345799999999999988766 577777 44445541 1 11221 2235788884
Q ss_pred CCEEEEEECCCcEEEee
Q 000694 1331 NDIVLCGTETGLIKGWI 1347 (1349)
Q Consensus 1331 g~~LaSGS~DGtIrIWD 1347 (1349)
+..|+++..++...+|.
T Consensus 507 ~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 507 GDSLVVGRSDPEHPVWY 523 (591)
T ss_pred CCEEEEEecCCCCceEE
Confidence 44566777666555653
No 458
>PTZ00429 beta-adaptin; Provisional
Probab=61.45 E-value=53 Score=43.52 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=82.2
Q ss_pred cchhHHHhHH----HHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhc
Q 000694 706 INSPRVLCGL----LDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILR 781 (1349)
Q Consensus 706 ~~~~~~~~~l----~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~ 781 (1349)
|..+.++..+ ...+...+.--|..||-=+.++-+.+.. .+-+.-=..-+.++|...+-....+|+..|.|+-.
T Consensus 132 Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 3344444444 4444556788888888777888776653 11111111236678888999999999999999964
Q ss_pred cC-------chhHHHHHHHhhh--c-CchhHHHHHHHHhhcccchhhHHHHHHHhhhhcccCCCCCCcchHHHHHHHHHH
Q 000694 782 IP-------RSSAIDLLQRIHK--E-GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKA 851 (1349)
Q Consensus 782 l~-------R~~~~~~l~~i~~--~-g~~~~mh~ll~~lq~~~~e~~~~~a~lllqldll~ep~~~s~yreeAv~~i~~a 851 (1349)
.+ +....+++..|.+ | |-+.+|.+|..|-.+...| -++=++.+...
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e------------------------~~~il~~l~~~ 264 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES------------------------AETLLTRVLPR 264 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH------------------------HHHHHHHHHHH
Confidence 32 3345567777763 3 5555555554432111000 01223333333
Q ss_pred HhcCCChhHHHHHHHHHHhcCc
Q 000694 852 VASEESSTMQLLSSFILSNIGG 873 (1349)
Q Consensus 852 l~~~~~~~~q~~~~~al~~l~g 873 (1349)
|.+ .++.|...|+++++.+.-
T Consensus 265 Lq~-~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 265 MSH-QNPAVVMGAIKVVANLAS 285 (746)
T ss_pred hcC-CCHHHHHHHHHHHHHhcC
Confidence 333 378888888888888753
No 459
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.33 E-value=1.5e+02 Score=37.61 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred HHhcccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHHhhc-----chhhhhhhhhcC----CChhhhhhhc
Q 000694 583 AISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-----VPEAAILIYLIK----PSPTEIKTLE 653 (1349)
Q Consensus 583 ~~~~s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~lk~~-----~~~aavl~yll~----p~~~q~~~~~ 653 (1349)
-|..|-++.|.+-||..|+-++..-+.-|..+++.+ -|+-|+.++... +..|+-.+-.|| |+|.--....
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g-~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG-ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc-chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 466899999999999999999998888888888763 466666666543 233444444443 7777667777
Q ss_pred chhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhc
Q 000694 654 LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARH 721 (1349)
Q Consensus 654 ~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~ 721 (1349)
.+|.|++.|...++.. + +-|...+--|..|.++-++.+. -.++++.|++.|+.
T Consensus 238 iLp~L~~ll~~~D~~V-------l---~Da~WAlsyLsdg~ne~iq~vi-----~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEV-------L---TDACWALSYLTDGSNEKIQMVI-----DAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHhcCCHHH-------H---HHHHHHHHHHhcCChHHHHHHH-----HccchHHHHHHHcC
Confidence 8899999998766421 1 2233445555556666554441 23344456665554
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.29 E-value=3.9e+02 Score=32.83 Aligned_cols=185 Identities=9% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCCCEEEEEecCCeEEEEecCCcceeeccCCCeEEEEe-----eCCE---EEEEeC-C---CcEEEEEccC--Ccccccc
Q 000694 1162 TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV-----VQGK---IYIGCM-D---SSIQELAVSN--NVEREIK 1227 (1349)
Q Consensus 1162 ~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~V~~La~-----~dg~---LlSGs~-D---GsI~IWDl~t--~~~~~i~ 1227 (1349)
+....++....++.+.+||+.+...........+.+.+ -+|. +++++. + .+|++|-+.. +....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 44567777778889999999987776665555555554 2333 344332 2 4699997753 3222221
Q ss_pred ccccccccCCCCeEEEEEc--C-Cc-eEEEEEecCCCeEEEEECC---CC----CeEEEecCCCCCeEEEEEecCCCEEE
Q 000694 1228 APFKSWRLQSKPINSLVVY--K-DW-LYSASSSVEGSNIKEWRRH---RK----PQISIAPEKGTTIQAMAVVEDFIYLN 1296 (1349)
Q Consensus 1228 ~~lk~~~~h~~~I~sL~~~--p-d~-i~las~S~dDgtIrIWDl~---t~----~li~tl~gH~~~VtsLafSPDg~~La 1296 (1349)
.+.......-..++.++.. + ++ .+.+.. ..+|.+..|-+. .+ +.++.|.. ...+-+|.......+|.
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~-~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVN-GKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE-ETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEe-cCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 1100111122346667764 2 23 444443 456777777653 33 34677764 34688999999999999
Q ss_pred EEeCCCcEEEEECC--C---CcEEEEEeCC---CCeEEEEE----cCC--EEEEEECCCcEEEeeC
Q 000694 1297 YNSSASSLQIWLRG--T---QQKVGRISAG---SKITSLLT----AND--IVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1297 SGS~DGtVrVWDl~--t---g~~l~sl~~h---s~VtsLs~----dg~--~LaSGS~DGtIrIWD~ 1348 (1349)
.|-+|.-|.-|+.+ . ++.+....+. ..|-.|+. +|+ +|+|.-.+++..||+.
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 99888777666654 2 2233332221 23655553 233 4444445778888873
No 461
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=61.03 E-value=94 Score=36.86 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=82.6
Q ss_pred hHHHhHHHHHHhcCChHHHHHHHHH-HHHhhhcc--CcchhHHHhhcCcchhhHhhhcccc--hhHHH---HHHHHHHHh
Q 000694 709 PRVLCGLLDVARHQNLEELISLATI-LVKCIQFD--GQCRKYLSEFTAVAPLACLLQSGEK--RAIMI---ALEFFHEIL 780 (1349)
Q Consensus 709 ~~~~~~l~~~~~~~~~ee~~~~~~i-l~~Ci~ad--g~cr~~ia~~~~~~~~~~ll~~~~~--~~~~~---a~~~l~ELl 780 (1349)
..++..++.+++.|..+|+.-|+.+ =+.|++.+ ..+. -|.+.+. .++.+.+..... ++|.. |+.+++-+.
T Consensus 85 ~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~-ei~~~~~-~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 85 ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE-EIFEELK-PVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH-HHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 4456678888888988888877665 46899965 3333 3333222 244446665433 33333 334444444
Q ss_pred ccCchhHHHHHHHhhhcCchhHHH--HHHHHhhcc--------cchhhHHHHHHHhhhh---cccCCCCCCcchHHHHHH
Q 000694 781 RIPRSSAIDLLQRIHKEGNINILH--ILKLSLQQL--------QSDYQLLAANLLLQLD---TLENTTGKSVFTEEAMQV 847 (1349)
Q Consensus 781 ~l~R~~~~~~l~~i~~~g~~~~mh--~ll~~lq~~--------~~e~~~~~a~lllqld---ll~ep~~~s~yreeAv~~ 847 (1349)
+-.-..... .+..|. -++.|++.. ++....++|.| ---= .+.++.+..-+-++++..
T Consensus 163 ~~d~~~~~~---------~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL-~aW~lLlt~~~~~~~~~~~~~~~~~ 232 (309)
T PF05004_consen 163 GSDEEETEE---------LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL-SAWALLLTTLPDSKLEDLLEEALPA 232 (309)
T ss_pred cCChhHHHH---------HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 433211110 112333 122333322 22223333332 1111 224455555677899999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhc
Q 000694 848 ILKAVASEESSTMQLLSSFILSNI 871 (1349)
Q Consensus 848 i~~al~~~~~~~~q~~~~~al~~l 871 (1349)
|.+-|++. +..||..|.++|..|
T Consensus 233 l~~lL~s~-d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 233 LSELLDSD-DVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHH
Confidence 99999866 889999999999877
No 462
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=60.84 E-value=1.5e+02 Score=35.92 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEE-ECCC-C----C---eEEEecC----CCCCeEEEEEecCCCEEEEEe
Q 000694 1238 KPINSLVVYKDWLYSASSSVEGSNIKEW-RRHR-K----P---QISIAPE----KGTTIQAMAVVEDFIYLNYNS 1299 (1349)
Q Consensus 1238 ~~I~sL~~~pd~i~las~S~dDgtIrIW-Dl~t-~----~---li~tl~g----H~~~VtsLafSPDg~~LaSGS 1299 (1349)
.....+.+.++++++.. ...|..| |... + + ++..+.. +......+.|.|||.+.++-+
T Consensus 72 ~~p~Gi~~~~~GlyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGGVYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCccceeEecCCEEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 34577888888844432 2245444 5432 1 1 1222322 234577899999998776554
No 463
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.84 E-value=4e+02 Score=32.88 Aligned_cols=139 Identities=7% Similarity=0.051 Sum_probs=71.9
Q ss_pred CCCCEEEEEecCCeEEEEecCCc---ceeeccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCccc---cccccccccc
Q 000694 1162 TYGKTIFASTQGHRMKVIDSSRT---LKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVER---EIKAPFKSWR 1234 (1349)
Q Consensus 1162 ~~g~~LvsgS~DgtIkVWDl~~~---~~~~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~---~i~~~lk~~~ 1234 (1349)
+++..++++.....++-||-... .........+..+.+ +++.++.++.+|.+.. ....+... ..... ...
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~--~~~ 324 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA--DIK 324 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec--ccC
Confidence 44444444443333344444322 122222334777877 7888887778887653 33333211 01000 001
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000694 1235 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1307 (1349)
Q Consensus 1235 ~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~---gH~~~VtsLafSPDg~~LaSGS~DGtVrVW 1307 (1349)
.....+..+.+.++....+++. +|.+.... ..|+.-.... .-....+.+.|.++++-+++| .+|.|.-|
T Consensus 325 ~~~~~l~~v~~~~d~~~~a~G~--~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 325 SRGFGILDVGYRSKKEAWAAGG--SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceEEEEEcCCCcEEEEEC--CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1234578888887766666552 55554443 3343322222 223568899998877777766 47776544
No 464
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.12 E-value=3.2e+02 Score=31.50 Aligned_cols=192 Identities=9% Similarity=-0.000 Sum_probs=94.8
Q ss_pred CCCCeEEec--CCCCEEEEEe-cCCeEEEEecCCcceeeccC---CCeEEEEe-eCCEEEEEeC-CCcEEEEEccCCcc-
Q 000694 1153 TKEPIRKLD--TYGKTIFAST-QGHRMKVIDSSRTLKDIYRS---KGIKSMSV-VQGKIYIGCM-DSSIQELAVSNNVE- 1223 (1349)
Q Consensus 1153 h~~~V~sLs--~~g~~LvsgS-~DgtIkVWDl~~~~~~~~~~---~~V~~La~-~dg~LlSGs~-DGsI~IWDl~t~~~- 1223 (1349)
....+..++ ++.+.+++.. ..+.|..++.++.......- .....+++ .++.++.... ++.+.++++.....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 333466554 6666555554 45577777877655443332 33778888 6677776664 88999998844321
Q ss_pred cccc--c--cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeE--EEe------cCCCCCeEEEEE
Q 000694 1224 REIK--A--PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQI--SIA------PEKGTTIQAMAV 1288 (1349)
Q Consensus 1224 ~~i~--~--~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t---~~li--~tl------~gH~~~VtsLaf 1288 (1349)
.... . .......++..+-.+++.+....+...- +.....+|.++. ...+ ... ......+.++.+
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1110 0 0111123456688899988643333322 333445555432 1111 111 123346889999
Q ss_pred ecC-CCEEEEEeCCCcEEEEECCCCcEEEEEeC----CC------CeEEEEEcCC-EEEEEECCCcEEEe
Q 000694 1289 VED-FIYLNYNSSASSLQIWLRGTQQKVGRISA----GS------KITSLLTAND-IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1289 SPD-g~~LaSGS~DGtVrVWDl~tg~~l~sl~~----hs------~VtsLs~dg~-~LaSGS~DGtIrIW 1346 (1349)
+|. |.+++....+..|.++| .+|+.+..+.- ++ ..-.|+++++ .|+..++-+..+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 985 56667777888899999 77887776652 11 2567777632 55555566655554
No 465
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.61 E-value=5.6e+02 Score=34.14 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=57.3
Q ss_pred HHHHHhhhcCch---hHHHHHHHHhhcccchh----------------------hHHHHHHHh----hhhcccC------
Q 000694 789 DLLQRIHKEGNI---NILHILKLSLQQLQSDY----------------------QLLAANLLL----QLDTLEN------ 833 (1349)
Q Consensus 789 ~~l~~i~~~g~~---~~mh~ll~~lq~~~~e~----------------------~~~~a~lll----qldll~e------ 833 (1349)
.+++-++..|.| .+.|.|++-+-.+++|. +|++-++.- .=|||.+
T Consensus 426 tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~ 505 (866)
T KOG1062|consen 426 TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEE 505 (866)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccC
Confidence 356666666654 56788888888884332 222111100 1145543
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCcccccC
Q 000694 834 TTGKSVFTEEAMQVILKAVASEE-SSTMQLLSSFILSNIGGTFSWT 878 (1349)
Q Consensus 834 p~~~s~yreeAv~~i~~al~~~~-~~~~q~~~~~al~~l~g~fs~s 878 (1349)
|.|.+ -+|+++.|-..+.+.. ++.+..-+--||+-|.-||-++
T Consensus 506 p~~vt--esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 506 PIKVT--ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred CCcCC--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 44433 4788899988888885 7888888899999999888877
No 466
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=59.47 E-value=4.1e+02 Score=32.60 Aligned_cols=255 Identities=7% Similarity=0.012 Sum_probs=107.2
Q ss_pred EEEEEECCCc--EEEEECCCCceeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCCCe
Q 000694 1081 LLCSGFSDGS--IKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 1157 (1349)
Q Consensus 1081 ~LaSGS~DGt--IrVWDl~tg~~~~i~tL~gHs-s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~~V 1157 (1349)
+|+++..||. +.+-|+.+++.. .+..+. .......++|+++.++-...+..|+--|+.+.+..... ......+
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~---QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~ 125 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEIT---QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWK 125 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEE---E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEE
T ss_pred EEEEeccCCCcceEEEEcccCEEE---ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccc
Confidence 4777777774 556688887753 343332 22224566788888776666678888899887653222 1112222
Q ss_pred E--Ee--cCCCCEEEEEec----------------------CCeEEEEecCC-cceeeccC-CCeEEEEe--eCCEEEE-
Q 000694 1158 R--KL--DTYGKTIFASTQ----------------------GHRMKVIDSSR-TLKDIYRS-KGIKSMSV--VQGKIYI- 1206 (1349)
Q Consensus 1158 ~--sL--s~~g~~LvsgS~----------------------DgtIkVWDl~~-~~~~~~~~-~~V~~La~--~dg~LlS- 1206 (1349)
. .+ ..++..++..-. ...|...|+.. ....+... ..+..+.+ .+..+++
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 1 12 233333322211 11222223332 22222221 22455555 2334443
Q ss_pred ---EeCCCc-EEEEEccCC--ccccccccccccccCCCCeEEEEEcCCceEEEE--Eec--CCCeEEEEECCCCCeEEEe
Q 000694 1207 ---GCMDSS-IQELAVSNN--VEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS--SSV--EGSNIKEWRRHRKPQISIA 1276 (1349)
Q Consensus 1207 ---Gs~DGs-I~IWDl~t~--~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las--~S~--dDgtIrIWDl~t~~li~tl 1276 (1349)
|-.|.. -++|-+++. ....+... .....+..=-|.+++..+.- ... .+..|.-+|..+++.....
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-----~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRR-----MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecC-----CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 334442 366766543 22222100 11222222334455543322 111 1235666777776543322
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCC----------------cEEEEECCCCcEEEEEeC---------CCC----eEEE
Q 000694 1277 PEKGTTIQAMAVVEDFIYLNYNSSAS----------------SLQIWLRGTQQKVGRISA---------GSK----ITSL 1327 (1349)
Q Consensus 1277 ~gH~~~VtsLafSPDg~~LaSGS~DG----------------tVrVWDl~tg~~l~sl~~---------hs~----VtsL 1327 (1349)
. ......+-.++||++++.=|.|. -|++++...+....-..+ +.. -.++
T Consensus 281 ~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 E--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp E--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred e--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 2 12334555578999887755542 455678877665422222 111 2566
Q ss_pred EEcCC-EEEEEECCCcEEEe
Q 000694 1328 LTAND-IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1328 s~dg~-~LaSGS~DGtIrIW 1346 (1349)
++||+ .|+.+...|...||
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEE
T ss_pred CCCCCEEEEECCCCCCccEE
Confidence 67777 56677778887776
No 467
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=59.20 E-value=24 Score=29.53 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=26.4
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCeEEEEEccCC
Q 000694 1112 KAVTSFSLFEPG---ESLLSGSADKTIGVWQMVQR 1143 (1349)
Q Consensus 1112 s~VtsLafSpdg---~~LaSGS~DGtIrVWDl~tg 1143 (1349)
++|.++.|+|++ +.|+-+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999754 48888888899999999853
No 468
>PLN02153 epithiospecifier protein
Probab=59.19 E-value=3.1e+02 Score=32.60 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=47.9
Q ss_pred EEEEEcCCceEEEEEecCC---------CeEEEEECCCCCeEEEecCCC----C-CeEEEEEecCCCEEEEEeCC-----
Q 000694 1241 NSLVVYKDWLYSASSSVEG---------SNIKEWRRHRKPQISIAPEKG----T-TIQAMAVVEDFIYLNYNSSA----- 1301 (1349)
Q Consensus 1241 ~sL~~~pd~i~las~S~dD---------gtIrIWDl~t~~li~tl~gH~----~-~VtsLafSPDg~~LaSGS~D----- 1301 (1349)
.++....+.++++++...+ ..+.+||..+..-.. +.... . .-.+++ .-+++.++.|+.+
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~ 208 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILP 208 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEE-EECCeEEEEecccccccc
Confidence 3445556666665543211 257788887653322 11111 1 011222 2356665555432
Q ss_pred --------CcEEEEECCCCcEEEEEe-C--CC---CeEEEEEcCCEEEEEEC
Q 000694 1302 --------SSLQIWLRGTQQKVGRIS-A--GS---KITSLLTANDIVLCGTE 1339 (1349)
Q Consensus 1302 --------GtVrVWDl~tg~~l~sl~-~--hs---~VtsLs~dg~~LaSGS~ 1339 (1349)
..|.+||..+.+-...-. + .. ...++.+++++++.|+.
T Consensus 209 gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 209 GGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 458888887765443211 1 11 13444567778888885
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=58.93 E-value=3.7e+02 Score=31.90 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=75.4
Q ss_pred eEEEEe-eCCEEEEEeCCCcEE-EEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC-CCC
Q 000694 1194 IKSMSV-VQGKIYIGCMDSSIQ-ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR-HRK 1270 (1349)
Q Consensus 1194 V~~La~-~dg~LlSGs~DGsI~-IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl-~t~ 1270 (1349)
+..+.. ++|.+++.+..|.+. -||--...-.. .-......|..+.+.+++...+.. .+|.|++=+. ...
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~------~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP------HNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDDG 218 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE------EE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceE------EccCccceehhceecCCCCEEEEe--CCcEEEEccCCCCc
Confidence 666655 888888877777765 44443221000 011235789999999996655544 4777777762 221
Q ss_pred CeEE----EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC----CCCeEEEEE-cCCEEEEEECCC
Q 000694 1271 PQIS----IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA----GSKITSLLT-ANDIVLCGTETG 1341 (1349)
Q Consensus 1271 ~li~----tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~----hs~VtsLs~-dg~~LaSGS~DG 1341 (1349)
..-. ......-.+..++|.+++...++|+ .|++ +.....|+.-..-.. .+..+.+.| +++.-++-+.+|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 1111 1112233588999999988877765 5544 345556665555543 233778887 566777778899
Q ss_pred cEEEe
Q 000694 1342 LIKGW 1346 (1349)
Q Consensus 1342 tIrIW 1346 (1349)
.|--|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88766
No 470
>PLN02193 nitrile-specifier protein
Probab=57.97 E-value=4.7e+02 Score=32.79 Aligned_cols=72 Identities=6% Similarity=-0.094 Sum_probs=35.9
Q ss_pred EEcCCceEEEEEec--CCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEeCC--------------CcE
Q 000694 1244 VVYKDWLYSASSSV--EGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSA--------------SSL 1304 (1349)
Q Consensus 1244 ~~~pd~i~las~S~--dDgtIrIWDl~t~~li~tl~g---H~~~VtsLafSPDg~~LaSGS~D--------------GtV 1304 (1349)
....+.++++.+.. .-..+.+||+.+.+-...-.. ........+..-++++++.|+.+ ..+
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccE
Confidence 33445555554321 014589999887544322110 11111111223356777777753 247
Q ss_pred EEEECCCCcEE
Q 000694 1305 QIWLRGTQQKV 1315 (1349)
Q Consensus 1305 rVWDl~tg~~l 1315 (1349)
.+||..+.+..
T Consensus 405 ~~~D~~t~~W~ 415 (470)
T PLN02193 405 FALDTETLQWE 415 (470)
T ss_pred EEEEcCcCEEE
Confidence 78888776543
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=57.56 E-value=1.4e+02 Score=31.30 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=59.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCeEE------EEEEecCCCCeEEec------CCCCEEEEEecCCeEEEEecCCc
Q 000694 1117 FSLFEPGESLLSGSADKTIGVWQMVQRKLE------LIEVIATKEPIRKLD------TYGKTIFASTQGHRMKVIDSSRT 1184 (1349)
Q Consensus 1117 LafSpdg~~LaSGS~DGtIrVWDl~tg~~~------~~~~~~h~~~V~sLs------~~g~~LvsgS~DgtIkVWDl~~~ 1184 (1349)
-.|......|+.++.-|.|.|.+....... ..........|+++. .++.-++..+....+..||+...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 356555667888888888888886543211 112334455566653 12333444445578899999865
Q ss_pred ceeeccC--CCeEEEEe-----eCCEEEEEeCCCcEEEEEccC
Q 000694 1185 LKDIYRS--KGIKSMSV-----VQGKIYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1185 ~~~~~~~--~~V~~La~-----~dg~LlSGs~DGsI~IWDl~t 1220 (1349)
...+++. .+|.++.+ .+..++..+.+..|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 5444433 45777766 133455544555666555543
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.42 E-value=1.6e+02 Score=40.56 Aligned_cols=219 Identities=8% Similarity=-0.062 Sum_probs=97.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecCCC----CeEE--ecCCCCEEEEEecCCeEEEEecCCcc
Q 000694 1112 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE----PIRK--LDTYGKTIFASTQGHRMKVIDSSRTL 1185 (1349)
Q Consensus 1112 s~VtsLafSpdg~~LaSGS~DGtIrVWDl~tg~~~~~~~~~h~~----~V~s--Ls~~g~~LvsgS~DgtIkVWDl~~~~ 1185 (1349)
.....++|+|....++.|+.+|.|+++-...-+.. ..+.. .+.. +............+..+.+|......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~----~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV----GLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEE----eccccccchhhhheeeeecccccceeecccceeeecccccc
Confidence 35567889999999999999999999876432221 11111 1111 11222333444455556666553211
Q ss_pred eeeccCCCeEEEEe--eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 000694 1186 KDIYRSKGIKSMSV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 1263 (1349)
Q Consensus 1186 ~~~~~~~~V~~La~--~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIr 1263 (1349)
. .+....+.+... +-+. ..| ..+.+++||..-........ ..+......+.. ...+. +...+...+-.-.
T Consensus 112 ~-~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~s~~--~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 112 G-VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKY--AGTESSNFVPYE-SLSPT--LSIEGLVIDLDTV 183 (993)
T ss_pred e-eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhcccee--ccccccccceee-eeccc--eeeeccccccccc
Confidence 1 111112333332 2223 445 88888888875432211100 000111000000 00000 0000000010111
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEECCCc
Q 000694 1264 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTETGL 1342 (1349)
Q Consensus 1264 IWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~-VtsLs~dg~~LaSGS~DGt 1342 (1349)
.|.+.... ..+.-+...+.+..+......... ..-+.+-+|+.........+...+. . ..++..++++..||.
T Consensus 184 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 184 LISLPDAY--LGLSLIEYESLQVLYYSPTKILIG-FNRGLVVIKDRASKYVQSAYLPNGQLE---SRDGSHFVSYHTDGS 257 (993)
T ss_pred eeeccccc--ccccccccccceeeeecCCCccee-eeeeeeeehhcccccchhhcccccccC---ccCCceEEEEEecCC
Confidence 11111100 112223344444444433333332 3346666666554433333332111 2 567889999999999
Q ss_pred EEEeeC
Q 000694 1343 IKGWIP 1348 (1349)
Q Consensus 1343 IrIWD~ 1348 (1349)
+.+||.
T Consensus 258 ~~fWd~ 263 (993)
T KOG1983|consen 258 YAFWDV 263 (993)
T ss_pred EEeeec
Confidence 999984
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=56.51 E-value=3.6e+02 Score=34.55 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=91.8
Q ss_pred CEEEEEEc-CCEEEEEECCCcEEEEECCCCceeEEEEeccCCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEEccCCeEE
Q 000694 1071 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-VTSFSLFE--PGESLLSGSADKTIGVWQMVQRKLE 1146 (1349)
Q Consensus 1071 ~Vt~Lafs-dg~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~-VtsLafSp--dg~~LaSGS~DGtIrVWDl~tg~~~ 1146 (1349)
.|.++..+ +|.+-+|+.+|.+++=+..-.. ...+..-++. +..++..| .+..+--...-|.+.+=+-.+|...
T Consensus 291 ~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~---ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v 367 (671)
T COG3292 291 TVNSLWLDTDGSLWVGTYGGIVRYLTADWKR---MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELV 367 (671)
T ss_pred cccceeeccCCCEeeeccCceEEEecchhhh---eeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEE
Confidence 44555553 6678888888766654432111 1111111111 11111222 1111111222233344444455554
Q ss_pred EEEEecCCCCeEEec-CCCCEEEEEecCCeEEEEecCC--cceee---ccCCCeEEEEe-eCCEEEEEeCCCcEEEEEcc
Q 000694 1147 LIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR--TLKDI---YRSKGIKSMSV-VQGKIYIGCMDSSIQELAVS 1219 (1349)
Q Consensus 1147 ~~~~~~h~~~V~sLs-~~g~~LvsgS~DgtIkVWDl~~--~~~~~---~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~ 1219 (1349)
..........|+... ..+..++.++..+.+..|+... ..... .....|..+.- +++.+..|+.+|.++. +..
T Consensus 368 ~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~-~pe 446 (671)
T COG3292 368 RSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR-DPE 446 (671)
T ss_pred EEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec-Ccc
Confidence 443333333344322 2366788888776677776653 11111 11223555555 8888999999998772 222
Q ss_pred CCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 000694 1220 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 1273 (1349)
Q Consensus 1220 t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li 1273 (1349)
.++......+ ...-.....+..+...+++..-++.+ + .|..|+.+..-..
T Consensus 447 ~~~v~n~ln~-~~~~l~~s~~~~lg~~~~g~Lw~a~g--~-gva~~~sq~~~~~ 496 (671)
T COG3292 447 SGRVLNLLNP-GSHGLDGSRVEQLGLGPDGRLWLAAG--S-GVAAWESQRRMFV 496 (671)
T ss_pred ccchhccccc-ccCcCCcchhhhhccCCCCceEEEec--c-eeeeeccccceec
Confidence 2221111111 01112344566777777766555442 2 4788887654333
No 474
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=55.93 E-value=1.9e+02 Score=39.77 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=96.0
Q ss_pred ceEEEEEeeeeeecccCCCCEEEEEE---c-----C---CEEEEEEC---------CCcEEEEECCC-----Ccee---E
Q 000694 1052 SRISCVHTQILEASHKCSGAVTALIY---Y-----K---GLLCSGFS---------DGSIKMWDIKK-----QSAM---L 1103 (1349)
Q Consensus 1052 ~~w~~~~t~tl~~~~gH~~~Vt~Laf---s-----d---g~LaSGS~---------DGtIrVWDl~t-----g~~~---~ 1103 (1349)
.+|.+.+.-..+. ..-|+++.. . . .++++|.. -|.+.|+|+-. |++. .
T Consensus 1012 ~sw~vi~~iefq~----~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~K 1087 (1366)
T KOG1896|consen 1012 ESWEVIDKIEFQE----NEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNK 1087 (1366)
T ss_pred CccccccccccCc----cceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccce
Confidence 3788777733222 334555554 2 1 26777753 38899999732 2211 1
Q ss_pred EE--EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCCeEEEEEEecCCCCeEEecCCCCEEEEEecCCeEEEEe
Q 000694 1104 VW--DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM-VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID 1180 (1349)
Q Consensus 1104 i~--tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl-~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~DgtIkVWD 1180 (1349)
++ ..+.-+++|..++= -+| +|++|. ...|.||++ +.+.+.-..+....-.+.++..-.+.++.|.--..|.+..
T Consensus 1088 lKel~~eE~KGtVsavce-V~G-~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~ 1164 (1366)
T KOG1896|consen 1088 LKELYIEEQKGTVSAVCE-VRG-HLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLG 1164 (1366)
T ss_pred eeeeehhhcccceEEEEE-ecc-EEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEE
Confidence 11 12345677877764 345 455544 467999999 5666665555565556666666678888887777777766
Q ss_pred cCCcceeec---c---CCCeEEEEe-eC-CE--EEEEeCCCcEEEEEccC
Q 000694 1181 SSRTLKDIY---R---SKGIKSMSV-VQ-GK--IYIGCMDSSIQELAVSN 1220 (1349)
Q Consensus 1181 l~~~~~~~~---~---~~~V~~La~-~d-g~--LlSGs~DGsI~IWDl~t 1220 (1349)
+..+..... . .-.+.+..| .+ +. ++++..|++|++|-..-
T Consensus 1165 fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1165 FQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred EccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 654332221 1 123777777 44 33 55677899999886643
No 475
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=55.82 E-value=4e+02 Score=31.30 Aligned_cols=102 Identities=8% Similarity=0.036 Sum_probs=47.5
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCeEE--EEEEecCCCCeE---EecCCCCEEEEEecC-----CeEEEEecCCcc-
Q 000694 1122 PGESLLSGSADK-----TIGVWQMVQRKLE--LIEVIATKEPIR---KLDTYGKTIFASTQG-----HRMKVIDSSRTL- 1185 (1349)
Q Consensus 1122 dg~~LaSGS~DG-----tIrVWDl~tg~~~--~~~~~~h~~~V~---sLs~~g~~LvsgS~D-----gtIkVWDl~~~~- 1185 (1349)
++..++.|+.++ .+..+|+.+.+.. .........+.. ....++...+.|+.. ..+..||.....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 455666677543 5666777665531 111111111111 122344455555532 357778876321
Q ss_pred eee--ccC--CCeEEEEeeCCEEEE-EeCCC----cEEEEEccCCcc
Q 000694 1186 KDI--YRS--KGIKSMSVVQGKIYI-GCMDS----SIQELAVSNNVE 1223 (1349)
Q Consensus 1186 ~~~--~~~--~~V~~La~~dg~LlS-Gs~DG----sI~IWDl~t~~~ 1223 (1349)
... ... ..-.++...+++++. |+.++ .+..||..+.+-
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 111 111 111222335666665 66553 356788887654
No 476
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.68 E-value=1.8e+02 Score=34.40 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=76.5
Q ss_pred HHHHHHHHhcc-cchhhHHHHHHHHHHhhhcCcchhhhhhh---cCC--ChhHHHHHHhhc----chhhhhhhh-hcC--
Q 000694 577 LEQLLTAISAS-KEETVIRASVSILTTIILANESVIEDIKK---KGL--RLSDLATALKRN----VPEAAILIY-LIK-- 643 (1349)
Q Consensus 577 i~~~~e~~~~s-~~~~v~~~~~~il~~~i~~~~~~~~~~~~---~d~--~~~~~~~~lk~~----~~~aavl~y-ll~-- 643 (1349)
...|+-+|.+. .++++++....++.+|+..|+...+.+.. .++ -+..|.++|.++ ...|+-++= ++.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 33344444444 89999999999999999999987777655 223 478888888776 334443332 322
Q ss_pred CChhhhhhhcchhHHHHHHhccccccccccccccCchhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHh---
Q 000694 644 PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVAR--- 720 (1349)
Q Consensus 644 p~~~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~--- 720 (1349)
|....-...+.++.++..+++.-..... .=...++..+..|+. .++.+ ......+.++.|...++
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~------~~~~~av~~L~~LL~-~~~~R-----~~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDS------ELQYIAVQCLQNLLR-SKEYR-----QVFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---------HHHHHHHHHHHT-SHHHH-----HHHHTHHHHHHHHHHHH---
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCc------chHHHHHHHHHHHhC-cchhH-----HHHHhcCcHHHHHHHHHhhc
Confidence 3333333368889999999962210000 001566677888873 32222 22223555666666662
Q ss_pred cCChHHHHHHHHHHHHhhh
Q 000694 721 HQNLEELISLATILVKCIQ 739 (1349)
Q Consensus 721 ~~~~ee~~~~~~il~~Ci~ 739 (1349)
...-.-..+..=-.+.|+.
T Consensus 205 ~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 205 TNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHH
Confidence 1122233344444455655
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=55.30 E-value=4.3e+02 Score=31.51 Aligned_cols=232 Identities=12% Similarity=0.109 Sum_probs=109.4
Q ss_pred CEEEEEE-cCCEEEEEECCCcEEEEECCCCce-eEEEEe----ccCCCcEEEEEEcCC---CCEEEEEeC-C--------
Q 000694 1071 AVTALIY-YKGLLCSGFSDGSIKMWDIKKQSA-MLVWDV----KEHRKAVTSFSLFEP---GESLLSGSA-D-------- 1132 (1349)
Q Consensus 1071 ~Vt~Laf-sdg~LaSGS~DGtIrVWDl~tg~~-~~i~tL----~gHss~VtsLafSpd---g~~LaSGS~-D-------- 1132 (1349)
.-++|+| ++|.++++...|.|++++ ..+.. ..+..+ .........++++|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3468888 577888888899999999 33332 233333 234567899999994 234443322 1
Q ss_pred CeEEEEEccCC--e-----EEEEEEec-----CCCCeEEecCCCCEEEEEecCC-------------eEEEEecCCcce-
Q 000694 1133 KTIGVWQMVQR--K-----LELIEVIA-----TKEPIRKLDTYGKTIFASTQGH-------------RMKVIDSSRTLK- 1186 (1349)
Q Consensus 1133 GtIrVWDl~tg--~-----~~~~~~~~-----h~~~V~sLs~~g~~LvsgS~Dg-------------tIkVWDl~~~~~- 1186 (1349)
..|.-|....+ . .+...... |...-..+.+++...++.+..+ .|.-.+.++...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444555443 1 11111122 2222334567776555554322 333334443210
Q ss_pred ------------eec-c-CCCeEEEEe-eC-CEEEEE--eCCCcEEEEEccCCccc-----------------------c
Q 000694 1187 ------------DIY-R-SKGIKSMSV-VQ-GKIYIG--CMDSSIQELAVSNNVER-----------------------E 1225 (1349)
Q Consensus 1187 ------------~~~-~-~~~V~~La~-~d-g~LlSG--s~DGsI~IWDl~t~~~~-----------------------~ 1225 (1349)
.++ . ......++| +. |.++++ +.|+.=.+.-+..+... .
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 010 0 112566777 65 888864 33333333323222110 0
Q ss_pred ccccccccccCCCCeEEEEEcCC-------ceEEEEEecCCCeEEEEECCCC-CeE---EEecCCCCCeEEEEEecCCCE
Q 000694 1226 IKAPFKSWRLQSKPINSLVVYKD-------WLYSASSSVEGSNIKEWRRHRK-PQI---SIAPEKGTTIQAMAVVEDFIY 1294 (1349)
Q Consensus 1226 i~~~lk~~~~h~~~I~sL~~~pd-------~i~las~S~dDgtIrIWDl~t~-~li---~tl~gH~~~VtsLafSPDg~~ 1294 (1349)
...+...+..| ..+..+.+..+ +.++++. ...+.|...+++.+ ... ..+......+.++++.|||.+
T Consensus 242 ~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 242 FVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVAD-YGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp S---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEE-TTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred cCccceeecCc-cccCceEEECCccCccccCcEEEec-CCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 01121222222 33444555432 2233333 23556777766543 221 122344558999999999998
Q ss_pred EEEEeCCCcEE
Q 000694 1295 LNYNSSASSLQ 1305 (1349)
Q Consensus 1295 LaSGS~DGtVr 1305 (1349)
.++-+.+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88887888763
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=54.96 E-value=48 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=29.0
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 000694 1290 EDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLT 1329 (1349)
Q Consensus 1290 PDg~~LaSGS-~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~ 1329 (1349)
|++++++++. .+++|.++|..+++.+..+..+.....+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677666554 688999999999999988886444444443
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=54.43 E-value=1e+02 Score=36.86 Aligned_cols=108 Identities=9% Similarity=0.095 Sum_probs=58.6
Q ss_pred eEEEEe-eCCEEEEEeCCCcEEEEEccCCcc-ccccccccccccCCCCeEEEEEcCC-----ceEEEEEec------CCC
Q 000694 1194 IKSMSV-VQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKD-----WLYSASSSV------EGS 1260 (1349)
Q Consensus 1194 V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~-~~i~~~lk~~~~h~~~I~sL~~~pd-----~i~las~S~------dDg 1260 (1349)
-+.|++ |+|.++++-..|.|++++ .++.. ..+.....+..........+++||+ .+|+..... .+.
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 356777 888888888899999998 33322 2121111233445667899999994 445544321 011
Q ss_pred eEEEEECCCC--------CeEEEecC---CCCCeEEEEEecCCCEEEEEeCCC
Q 000694 1261 NIKEWRRHRK--------PQISIAPE---KGTTIQAMAVVEDFIYLNYNSSAS 1302 (1349)
Q Consensus 1261 tIrIWDl~t~--------~li~tl~g---H~~~VtsLafSPDg~~LaSGS~DG 1302 (1349)
.|.-|....+ .++..... ....-..|.|.|||.+.++.+..+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 3444443322 11222222 334567799999998777766443
No 480
>PRK10115 protease 2; Provisional
Probab=53.39 E-value=6.8e+02 Score=33.20 Aligned_cols=190 Identities=8% Similarity=-0.014 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCCeEEEEEEecCCCCeEEecCCCCEEEEEecC------CeEEEEe
Q 000694 1112 KAVTSFSLFEPGESLLSG-----SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG------HRMKVID 1180 (1349)
Q Consensus 1112 s~VtsLafSpdg~~LaSG-----S~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~~g~~LvsgS~D------gtIkVWD 1180 (1349)
-.+..+.|+|||++|+-+ +...+|++-|+.+|..+........ .-..+.++++.++.+..+ ..|..++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 346778899999987743 3334688889988863322222222 224566788877766543 2566677
Q ss_pred cCCc---ceeeccCC-C-eE--EEEeeCCE-EEE---EeCCCcEEEEEccC--CccccccccccccccCCCCeEEEEEcC
Q 000694 1181 SSRT---LKDIYRSK-G-IK--SMSVVQGK-IYI---GCMDSSIQELAVSN--NVEREIKAPFKSWRLQSKPINSLVVYK 1247 (1349)
Q Consensus 1181 l~~~---~~~~~~~~-~-V~--~La~~dg~-LlS---Gs~DGsI~IWDl~t--~~~~~i~~~lk~~~~h~~~I~sL~~~p 1247 (1349)
+... ...++... . .. .....++. ++. ...++.+.+|+... +.... ...........+....
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 279 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV------FLPRRKDHEYSLDHYQ 279 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE------EEECCCCCEEEEEeCC
Confidence 7633 22233221 1 22 11122443 333 23356788888533 22111 1111122223333223
Q ss_pred CceEEEEEe-cCCCeEEEEECC-CCCeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000694 1248 DWLYSASSS-VEGSNIKEWRRH-RKPQISIAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLR 1309 (1349)
Q Consensus 1248 d~i~las~S-~dDgtIrIWDl~-t~~li~tl~gH~-~~VtsLafSPDg~~LaSGS~DGtVrVWDl 1309 (1349)
+..++.+.. .....+...++. .++....+.... ..|..+.+. .+.++++...+|.-+++-+
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 344443321 112234444444 232222333222 367788877 4456666777887766643
No 481
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=52.05 E-value=41 Score=31.12 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHhhccc-chhhHHHHHHHhhhhcccCCCCCCcchHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCcccccCCchhh
Q 000694 805 ILKLSLQQLQ-SDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYT 883 (1349)
Q Consensus 805 ~ll~~lq~~~-~e~~~~~a~lllqldll~ep~~~s~yreeAv~~i~~al~~~~~~~~q~~~~~al~~l~g~fs~sG~~~~ 883 (1349)
.|+-.|+..+ +.-|--++..|- .+..++++..|++.| ..+++.++..++.||-.+| ++=.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~-----------~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~-------~~~~ 63 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG-----------ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIG-------DPEA 63 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH-----------CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH-------HHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-----------HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-------CHHH
Confidence 3556663333 455554454443 334679999999999 4568999999999999884 4445
Q ss_pred HHHhhhhcC
Q 000694 884 VAWLVKKAG 892 (1349)
Q Consensus 884 ~~~llk~ag 892 (1349)
...|.+...
T Consensus 64 ~~~L~~~l~ 72 (88)
T PF13646_consen 64 IPALIKLLQ 72 (88)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 566666444
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=51.85 E-value=4.6e+02 Score=32.22 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1281 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1281 ~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
..|.++...+..+.+++-..+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999998899999999999999999753
No 483
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=51.81 E-value=27 Score=45.56 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=82.7
Q ss_pred CCCEEEEEecCCeEEEEecC-Cccee----ecc--CCCeEEEEeeCCEEEEEeCCCcEEEEEccCCcccccccccccccc
Q 000694 1163 YGKTIFASTQGHRMKVIDSS-RTLKD----IYR--SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 1235 (1349)
Q Consensus 1163 ~g~~LvsgS~DgtIkVWDl~-~~~~~----~~~--~~~V~~La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~ 1235 (1349)
+...+..|+.++.+.++... +.... ... ...+.++.+.-+.+..|.-||++-.|--.-..... ..+.+....
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd-~ep~~~~~~ 624 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWD-GEPNISIPT 624 (925)
T ss_pred CCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCC-CCCcccccc
Confidence 34567788888888888765 21111 111 12256666656666667777776655322211000 001112223
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000694 1236 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1312 (1349)
Q Consensus 1236 h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl~g---H~~~VtsLafSPDg~~LaSGS~DGtVrVWDl~tg 1312 (1349)
...++.+..+..+..+.. .||.|.++...+......... |...|+.+.+..+|-+++-.+.|- ++.++.++.
T Consensus 625 g~lPvrsla~~ed~~was----~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhtetl 699 (925)
T KOG3522|consen 625 GSLPVRSLAFQEDFVWAS----EGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTETL 699 (925)
T ss_pred CCccccchhhhhceeeee----cCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEeccccc
Confidence 346677777766654332 378999999877555444443 456899999988888887776553 444454443
Q ss_pred c
Q 000694 1313 Q 1313 (1349)
Q Consensus 1313 ~ 1313 (1349)
.
T Consensus 700 ~ 700 (925)
T KOG3522|consen 700 W 700 (925)
T ss_pred C
Confidence 3
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.39 E-value=2.1e+02 Score=37.28 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEEcCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-------
Q 000694 1072 VTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------- 1142 (1349)
Q Consensus 1072 Vt~Lafsdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS~DGtIrVWDl~t------- 1142 (1349)
++++.-++| .++.|+.||+|++|+....+...+.+.. .|-..+.|...| |++...|..+.-|.-+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc--eEEEeccchhheeeccCcchhhcc
Q ss_pred --------------CeEEEEEEecCCCCeEEec-------CCCCEEEEEecCCeEEEEecCCcceeeccCCC---eEEEE
Q 000694 1143 --------------RKLELIEVIATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG---IKSMS 1198 (1349)
Q Consensus 1143 --------------g~~~~~~~~~h~~~V~sLs-------~~g~~LvsgS~DgtIkVWDl~~~~~~~~~~~~---V~~La 1198 (1349)
.......+....+.|.++. ..+..-.+--.-..|.+-|+..........+. |.-+.
T Consensus 92 yndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelk 171 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELK 171 (1636)
T ss_pred ccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhh
Q ss_pred e-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCC--------CeEEEEEcCCceEEEEEecCCC
Q 000694 1199 V-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK--------PINSLVVYKDWLYSASSSVEGS 1260 (1349)
Q Consensus 1199 ~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~--------~I~sL~~~pd~i~las~S~dDg 1260 (1349)
+ ...+.+.|-...+|.+-|+.+.+...+ .|.+.++ .-.++-++.+...++-.+.+|.
T Consensus 172 ilgkdryli~~ts~siii~d~es~rfsei-----~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~s 237 (1636)
T KOG3616|consen 172 ILGKDRYLIAHTSESIIIADLESNRFSEI-----AWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDS 237 (1636)
T ss_pred hccccceEEeeccccEEEeecccchhhhh-----hcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCc
No 485
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.35 E-value=36 Score=40.19 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhc---ccchhhHHHHHHHHHHhhhcCcchhhhhhhcCCChhHHHHHH------hhc-----chhhhhhhh
Q 000694 575 VILEQLLTAISA---SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATAL------KRN-----VPEAAILIY 640 (1349)
Q Consensus 575 ~vi~~~~e~~~~---s~~~~v~~~~~~il~~~i~~~~~~~~~~~~~d~~~~~~~~~l------k~~-----~~~aavl~y 640 (1349)
.+++.++..|.+ |.+.+++..++..|.+|. +.+..|+.+.+ .-.+..|..+| +++ ..++...+|
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 566777777665 677788999999999996 88888888877 46678888888 332 778888999
Q ss_pred hcC---CChhhhhhhcchhHHHHHHhccccccccccccccCchh--hHHHHHHHHHhcc
Q 000694 641 LIK---PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPA--ASLMIIEVLVTAF 694 (1349)
Q Consensus 641 ll~---p~~~q~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~p~~--aa~~~l~~ll~~~ 694 (1349)
+|. +...+|....++|.|+++++... ++|. -+++++.+|++..
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~~~-----------KEKvvRv~la~l~Nl~~~~ 271 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKDSI-----------KEKVVRVSLAILRNLLSKA 271 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH-------------SHHHHHHHHHHHHHTTSSS
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHhcc
Confidence 887 44578888889999999999733 2222 4566688888633
No 486
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=49.25 E-value=2.4e+02 Score=35.45 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=77.9
Q ss_pred CCCCEEE-EEeCCCeEEEEEccCCeEEEEEEecCCCCeEEecC--------CCCEEEEEecCCeEEEEecC--Cccee--
Q 000694 1121 EPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT--------YGKTIFASTQGHRMKVIDSS--RTLKD-- 1187 (1349)
Q Consensus 1121 pdg~~La-SGS~DGtIrVWDl~tg~~~~~~~~~h~~~V~sLs~--------~g~~LvsgS~DgtIkVWDl~--~~~~~-- 1187 (1349)
.+...|+ .|+.-..+.-.|+..|+.+- .+.-+...+..+.| ..+.++-.+ +..|.-.|.+ +.-..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvve-eW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVE-EWDLKDDVVVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeee-EeecCCcceeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 3444444 45555566666777777653 33333444444432 233444444 4444444544 21111
Q ss_pred ----eccCCCeEEEEe-eCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 000694 1188 ----IYRSKGIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 1262 (1349)
Q Consensus 1188 ----~~~~~~V~~La~-~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtI 1262 (1349)
..+.....|... ..|++++|+..|-|++||--.....+ .+.+-+..|..+....++.++++.. ...+
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt------alP~lG~aIk~idvta~Gk~ilaTC--k~yl 626 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT------ALPGLGDAIKHIDVTANGKHILATC--KNYL 626 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhh------cCcccccceeeeEeecCCcEEEEee--cceE
Confidence 111112444444 78999999999999999975443221 2244578888999998888887764 5567
Q ss_pred EEEECC
Q 000694 1263 KEWRRH 1268 (1349)
Q Consensus 1263 rIWDl~ 1268 (1349)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 777753
No 487
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.85 E-value=3.2e+02 Score=33.83 Aligned_cols=153 Identities=11% Similarity=0.013 Sum_probs=82.4
Q ss_pred HhhcchhHHHhHHHHHHhcCChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchhhHhhhcccchhHHHHHHHHHHHhcc
Q 000694 703 LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRI 782 (1349)
Q Consensus 703 ~~a~~~~~~~~~l~~~~~~~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ELl~l 782 (1349)
|.-++.+++...|+..++..+..-|..+++.|-. -..-...+++.+|...+...|..|++.|-+|=.-
T Consensus 110 Lg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~------------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 110 LGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA------------HRHDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred HhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh------------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 4445667777777777766666555544433322 1111345677777777777778787777654211
Q ss_pred C----------------chhHHHHHHHhhhcCchhHHHHHHH-HhhcccchhhHHHHHHHhhhhcccCCCCCCcchHHHH
Q 000694 783 P----------------RSSAIDLLQRIHKEGNINILHILKL-SLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAM 845 (1349)
Q Consensus 783 ~----------------R~~~~~~l~~i~~~g~~~~mh~ll~-~lq~~~~e~~~~~a~lllqldll~ep~~~s~yreeAv 845 (1349)
. |+.+..=|..++.+.... .++- |-+.-++-.+-+++.+=+. +.| +|+
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~---~l~~~~~~~g~~~~~~l~~~lal~----~~~--------~a~ 242 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWG---VCRRFQVLEGGPHRQRLLVLLAVA----GGP--------DAQ 242 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHH---HHHHHHhccCccHHHHHHHHHHhC----Cch--------hHH
Confidence 1 122333333343333322 1111 2222222222222222121 222 888
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCcccccCCchhhHHHhhhhcC
Q 000694 846 QVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAG 892 (1349)
Q Consensus 846 ~~i~~al~~~~~~~~q~~~~~al~~l~g~fs~sG~~~~~~~llk~ag 892 (1349)
+.|++.++... +|..++.||-.+ |+|-+..||++.++
T Consensus 243 ~~L~~ll~d~~---vr~~a~~AlG~l-------g~p~av~~L~~~l~ 279 (410)
T TIGR02270 243 AWLRELLQAAA---TRREALRAVGLV-------GDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHhcChh---hHHHHHHHHHHc-------CCcchHHHHHHHhc
Confidence 88888877643 777777766544 78888889988776
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=48.53 E-value=2.6e+02 Score=29.34 Aligned_cols=99 Identities=7% Similarity=0.071 Sum_probs=58.0
Q ss_pred EEEEEECCCcEEEEECCCCc------eeEEEEeccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 000694 1081 LLCSGFSDGSIKMWDIKKQS------AMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQMVQRKLELIE 1149 (1349)
Q Consensus 1081 ~LaSGS~DGtIrVWDl~tg~------~~~i~tL~gHss~VtsLafSp-----dg~~LaSGS~DGtIrVWDl~tg~~~~~~ 1149 (1349)
.|++++.-|.|.|++..... ...+..+. -...|++++--+ +.+.|+.|+ ..++..||+....-+ +
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~--F 87 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL--F 87 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh--h
Confidence 48888899999999876432 11233333 345677776443 235677776 557899999876532 2
Q ss_pred EecCCCCeEEec-----CCCCEEEEEecCCeEEEEecCC
Q 000694 1150 VIATKEPIRKLD-----TYGKTIFASTQGHRMKVIDSSR 1183 (1349)
Q Consensus 1150 ~~~h~~~V~sLs-----~~g~~LvsgS~DgtIkVWDl~~ 1183 (1349)
...-.+.|.++. .....++..+.+..|.-||.++
T Consensus 88 yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 88 YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 223334455432 3344555555556666666653
No 489
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=48.43 E-value=53 Score=27.60 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=25.6
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCcEEEEECCC
Q 000694 1281 TTIQAMAVVEDF---IYLNYNSSASSLQIWLRGT 1311 (1349)
Q Consensus 1281 ~~VtsLafSPDg---~~LaSGS~DGtVrVWDl~t 1311 (1349)
+.|+++.|+|+. .+|+-.-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888888889999999985
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=47.40 E-value=5.7e+02 Score=30.65 Aligned_cols=49 Identities=14% Similarity=-0.067 Sum_probs=38.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEEC
Q 000694 1291 DFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTE 1339 (1349)
Q Consensus 1291 Dg~~LaSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg~~LaSGS~ 1339 (1349)
+|++.++-+..|.|.-+|..+|+......-.+....+.|.|+++++|.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmS 260 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLS 260 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEec
Confidence 6888888888999999998888766555555567888888998887754
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.50 E-value=1.2e+02 Score=35.46 Aligned_cols=78 Identities=10% Similarity=0.195 Sum_probs=48.8
Q ss_pred cEEEEECCCCceeEEEEeccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCeEEEEEE---ecCCCCeEEe
Q 000694 1090 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRKLELIEV---IATKEPIRKL 1160 (1349)
Q Consensus 1090 tIrVWDl~tg~~~~i~tL~gHss~VtsLafSpdg~~LaSGS------~DGtIrVWDl~tg~~~~~~~---~~h~~~V~sL 1160 (1349)
.|++||..+.++.. --.+-.+.|+++.|..+.+.++.|. ....+..||+.+........ ....++|..+
T Consensus 17 ~lC~yd~~~~qW~~--~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSS--PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeec--CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 58999998876522 2234557899999987777777664 45678899998776532111 1123566665
Q ss_pred c---CCCCEEEE
Q 000694 1161 D---TYGKTIFA 1169 (1349)
Q Consensus 1161 s---~~g~~Lvs 1169 (1349)
. .++..++.
T Consensus 95 ~~~~~d~~~~~~ 106 (281)
T PF12768_consen 95 TFISNDGSNFWV 106 (281)
T ss_pred EeeccCCceEEE
Confidence 4 35554543
No 492
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=46.37 E-value=2.2e+02 Score=34.69 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHhccccccchhhHhhcchhHHHhHHHHHHhc--CChHHHHHHHHHHHHhhhccCcchhHHHhhcCcchh
Q 000694 680 PAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARH--QNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPL 757 (1349)
Q Consensus 680 ~~aa~~~l~~ll~~~d~~~~~~~~~a~~~~~~~~~l~~~~~~--~~~ee~~~~~~il~~Ci~adg~cr~~ia~~~~~~~~ 757 (1349)
.+|+..++.-+++..+- +..+...++--+++.++.. .+..||.+|-.+.-+.++.++..+. + ..++
T Consensus 42 raa~yRilRy~i~d~~~------l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~-----~~~v 109 (371)
T PF14664_consen 42 RAAGYRILRYLISDEES------LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I-----PRGV 109 (371)
T ss_pred HHHHHHHHHHHHcCHHH------HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C-----CHHH
Confidence 47888888888865422 2222223333366666754 4788999999888888888664432 2 3344
Q ss_pred hHhhh----cccchhHHHHHHHHHHHhccCc
Q 000694 758 ACLLQ----SGEKRAIMIALEFFHEILRIPR 784 (1349)
Q Consensus 758 ~~ll~----~~~~~~~~~a~~~l~ELl~l~R 784 (1349)
++.+. ..+++-|..|++.|-||.=.+-
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~~P 140 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALLNP 140 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhhCH
Confidence 44443 3788899999999999988875
No 493
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=46.29 E-value=7.1e+02 Score=31.39 Aligned_cols=210 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCEEEEEE-cCC--EEEEEECCCcEEEEECCCCceeEEEEeccCCCcEEEEEEc----CCCC------EEEEEe---CCC
Q 000694 1070 GAVTALIY-YKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF----EPGE------SLLSGS---ADK 1133 (1349)
Q Consensus 1070 ~~Vt~Laf-sdg--~LaSGS~DGtIrVWDl~tg~~~~i~tL~gHss~VtsLafS----pdg~------~LaSGS---~DG 1133 (1349)
...+++++ .+| +++.||.-|.=.++.+.......+.++. .-+||.++++. .... .|++++ .+|
T Consensus 256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~g 334 (504)
T PF10433_consen 256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRG 334 (504)
T ss_dssp S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-
T ss_pred ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCC
Q ss_pred eEEEE----EccCCeEEEEEEecCCCCeEEecCCC--CEEEEEecCCeEEEEecC----Ccc-------eeeccCCCeEE
Q 000694 1134 TIGVW----QMVQRKLELIEVIATKEPIRKLDTYG--KTIFASTQGHRMKVIDSS----RTL-------KDIYRSKGIKS 1196 (1349)
Q Consensus 1134 tIrVW----Dl~tg~~~~~~~~~h~~~V~sLs~~g--~~LvsgS~DgtIkVWDl~----~~~-------~~~~~~~~V~~ 1196 (1349)
.+++. .+. +..........-..++.+.... +..+..+....-+++.+. ... .......++.+
T Consensus 335 sL~~lr~Gi~~~-~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~ 413 (504)
T PF10433_consen 335 SLRILRNGIGIE-GLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAA 413 (504)
T ss_dssp EEEEEEESBEEE---EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEE
T ss_pred cEEEEeccCCce-eeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEE
Q ss_pred EEeeCCEEEEEeCCCcEEEEEccCCccccccccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 000694 1197 MSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 1276 (1349)
Q Consensus 1197 La~~dg~LlSGs~DGsI~IWDl~t~~~~~i~~~lk~~~~h~~~I~sL~~~pd~i~las~S~dDgtIrIWDl~t~~li~tl 1276 (1349)
-.+.++.++=.+..+ |++.+...++.... .....+..|...+.....+.++.. ++.+..+.+.........
T Consensus 414 ~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~-----w~~~~~~~I~~a~~~~~~v~v~~~---~~~~~~~~~~~~~~~~~~ 484 (504)
T PF10433_consen 414 GNVGDGRIVQVTPKG-IRLIDLEDGKLTQE-----WKPPAGSIIVAASINDPQVLVALS---GGELVYFELDDNKISVSD 484 (504)
T ss_dssp EEETTTEEEEEESSE-EEEEESSSTSEEEE-----EE-TTS---SEEEESSSEEEEEE----TTEEEEEEEETTEEEEEE
T ss_pred EEcCCCeEEEEecCe-EEEEECCCCeEEEE-----EeCCCCCeEEEEEECCCEEEEEEe---CCcEEEEEEECCceeeee
Q ss_pred cCC-----CCCeEEEEEec
Q 000694 1277 PEK-----GTTIQAMAVVE 1290 (1349)
Q Consensus 1277 ~gH-----~~~VtsLafSP 1290 (1349)
... ...|.|+..+|
T Consensus 485 ~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 485 NDETILELDNEISCLSIEP 503 (504)
T ss_dssp E----EE-SS-EEEEE---
T ss_pred eccccccCCCceEEEEeCC
No 494
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=45.92 E-value=2e+02 Score=35.80 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=43.0
Q ss_pred HHHHHhhhcCCcCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCc
Q 000694 554 VTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE 608 (1349)
Q Consensus 554 i~~~~~~~~~~~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~ 608 (1349)
+-.+|-.+=..+ ....+.++.+|..+++++-.|..++|+|.++.+|--++..+.
T Consensus 208 ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 208 IFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 345677755433 333556789999999999999999999999999999998663
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.88 E-value=1.3e+02 Score=35.28 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=55.5
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEECCCCcEEEEEeC-----CCCeEEEEE
Q 000694 1261 NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS------SASSLQIWLRGTQQKVGRISA-----GSKITSLLT 1329 (1349)
Q Consensus 1261 tIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~LaSGS------~DGtVrVWDl~tg~~l~sl~~-----hs~VtsLs~ 1329 (1349)
.|++||..+.+-...-.+-.+.|+++.|..+.+.+++|. ....+..||..+......-.+ .++|+.+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 599999887665555555567899999997777777775 345688899877654322221 245777776
Q ss_pred ---cCC-EEEEEE-CCC--cEEEee
Q 000694 1330 ---AND-IVLCGT-ETG--LIKGWI 1347 (1349)
Q Consensus 1330 ---dg~-~LaSGS-~DG--tIrIWD 1347 (1349)
++. +.+.|. .+| .|..||
T Consensus 97 ~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 97 ISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eccCCceEEEeceecCCCceEEEEc
Confidence 443 444443 333 355554
No 496
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.55 E-value=1.5e+02 Score=39.19 Aligned_cols=67 Identities=7% Similarity=0.033 Sum_probs=46.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEC---------CCCcE--E-EEEe---------CCCCeEEEEEc-----CCEEE
Q 000694 1282 TIQAMAVVEDFIYLNYNSSASSLQIWLR---------GTQQK--V-GRIS---------AGSKITSLLTA-----NDIVL 1335 (1349)
Q Consensus 1282 ~VtsLafSPDg~~LaSGS~DGtVrVWDl---------~tg~~--l-~sl~---------~hs~VtsLs~d-----g~~La 1335 (1349)
.|..+.++|+|.+++..|..|.+.+.=- ..|+. . .++. ....|..+.|+ +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 6889999999999999988775544311 11211 1 1221 11237888886 45899
Q ss_pred EEECCCcEEEeeC
Q 000694 1336 CGTETGLIKGWIP 1348 (1349)
Q Consensus 1336 SGS~DGtIrIWD~ 1348 (1349)
+-+.|+++|+||.
T Consensus 166 vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 166 VLTSDNTLRLYDI 178 (717)
T ss_pred EEecCCEEEEEec
Confidence 9999999999986
No 497
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=45.37 E-value=1.6e+02 Score=38.58 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred cCCcCceeeechhHHHHHHHHHHhcccchhhHHHHHHHHHHhhhcCc----chhhhhhhcCCChhHHHHHHhhc---chh
Q 000694 562 NSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE----SVIEDIKKKGLRLSDLATALKRN---VPE 634 (1349)
Q Consensus 562 ~~~~~~~~~~~~~~vi~~~~e~~~~s~~~~v~~~~~~il~~~i~~~~----~~~~~~~~~d~~~~~~~~~lk~~---~~~ 634 (1349)
+..|...++|-+|.||.-.+--|--|+++.+++++.-+|--|-..+. .+++++.++...|..|++||..+ +.+
T Consensus 505 ~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~ 584 (717)
T KOG1048|consen 505 ATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVR 584 (717)
T ss_pred ccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHH
Confidence 33455667888999999988889999999999999998877766553 47888889999999999999997 433
Q ss_pred h--hhhhhh-cCCChhhhhhhcchhHHHHHHhccc
Q 000694 635 A--AILIYL-IKPSPTEIKTLELLPTLVEVICTSK 666 (1349)
Q Consensus 635 a--avl~yl-l~p~~~q~~~~~~~p~~~~v~~~~~ 666 (1349)
+ ..|--| ..|.-.+++.-.-+|.|++-|-.+.
T Consensus 585 s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~ 619 (717)
T KOG1048|consen 585 SAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSG 619 (717)
T ss_pred HHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCC
Confidence 3 334444 3477788888899999999998744
No 498
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=45.09 E-value=4.8e+02 Score=33.67 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=75.6
Q ss_pred CCCEEEEEEcC----C--EEEEEECCCcEEEEECCC-----CceeEEE--EeccCCCcE--EEEEEcCCCCEEEEEeCCC
Q 000694 1069 SGAVTALIYYK----G--LLCSGFSDGSIKMWDIKK-----QSAMLVW--DVKEHRKAV--TSFSLFEPGESLLSGSADK 1133 (1349)
Q Consensus 1069 ~~~Vt~Lafsd----g--~LaSGS~DGtIrVWDl~t-----g~~~~i~--tL~gHss~V--tsLafSpdg~~LaSGS~DG 1133 (1349)
-..|..+.|.+ + .+.+......|.||.+.. ++...-+ .+. ..-+| ..+.|+|....|+.-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCCceEEEEecCc
Confidence 45688899941 2 366666778899998852 2221111 111 11122 3567999998877655444
Q ss_pred eEEEEEccCCeEEEEEEecCCCCeEE--ecCCCCEEEEEecC-CeEEEEecCCcce-------eeccCCCeEEEEe-eCC
Q 000694 1134 TIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQG-HRMKVIDSSRTLK-------DIYRSKGIKSMSV-VQG 1202 (1349)
Q Consensus 1134 tIrVWDl~tg~~~~~~~~~h~~~V~s--Ls~~g~~LvsgS~D-gtIkVWDl~~~~~-------~~~~~~~V~~La~-~dg 1202 (1349)
.-.+.++.......+.-....+.|.| |..+|+.++++-.. =.-++||-..... .+..+..|.++.- -+.
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence 44556665433222233345556665 77889887766444 3577888653211 1112334666655 444
Q ss_pred EEEEE
Q 000694 1203 KIYIG 1207 (1349)
Q Consensus 1203 ~LlSG 1207 (1349)
.++.+
T Consensus 215 qVAva 219 (671)
T PF15390_consen 215 QVAVA 219 (671)
T ss_pred eEEEE
Confidence 44443
No 499
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=44.35 E-value=5.9e+02 Score=31.83 Aligned_cols=145 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CEEEEEe-CCCcEEEEEcc----CCccccccccccccc-cCCCCeEEEEEcCCceEEEEEecCC-----CeEEEEECCCC
Q 000694 1202 GKIYIGC-MDSSIQELAVS----NNVEREIKAPFKSWR-LQSKPINSLVVYKDWLYSASSSVEG-----SNIKEWRRHRK 1270 (1349)
Q Consensus 1202 g~LlSGs-~DGsI~IWDl~----t~~~~~i~~~lk~~~-~h~~~I~sL~~~pd~i~las~S~dD-----gtIrIWDl~t~ 1270 (1349)
.+|+..+ ..+.|+++|+. ..+..++..+..... ..-....++..-|++.+.+++-.+. |-+.++|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Q ss_pred CeEEEecCCCC---CeEEEEEecCCCEEEEEeCC--------------------CcEEEEECCCCcEEEEEeCCCC---e
Q 000694 1271 PQISIAPEKGT---TIQAMAVVEDFIYLNYNSSA--------------------SSLQIWLRGTQQKVGRISAGSK---I 1324 (1349)
Q Consensus 1271 ~li~tl~gH~~---~VtsLafSPDg~~LaSGS~D--------------------GtVrVWDl~tg~~l~sl~~hs~---V 1324 (1349)
.+......... .-+.+.|.|..+.++|.... .++.+||..+.+.++++.-+.. +
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Q ss_pred EEEEE--cCC---EEEEEECCCcEEEe
Q 000694 1325 TSLLT--AND---IVLCGTETGLIKGW 1346 (1349)
Q Consensus 1325 tsLs~--dg~---~LaSGS~DGtIrIW 1346 (1349)
..+.| ++. -++.+.-.++|..|
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEE
No 500
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=1.2e+02 Score=34.18 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=59.1
Q ss_pred EEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcC
Q 000694 1253 ASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL-NYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTAN 1331 (1349)
Q Consensus 1253 as~S~dDgtIrIWDl~t~~li~tl~gH~~~VtsLafSPDg~~L-aSGS~DGtVrVWDl~tg~~l~sl~~hs~VtsLs~dg 1331 (1349)
.++-.....|++||+.+++.+...+-....+.+=-...-|.++ .-.-.||.-.++|..+.+.+.++.-.+.=+.++.++
T Consensus 61 sTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~ 140 (262)
T COG3823 61 STGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDD 140 (262)
T ss_pred eccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCC
Confidence 3333345689999999988775544221111111111112222 222358888999999999998888766667788887
Q ss_pred CEEEEEECCCcEEEeeC
Q 000694 1332 DIVLCGTETGLIKGWIP 1348 (1349)
Q Consensus 1332 ~~LaSGS~DGtIrIWD~ 1348 (1349)
+.|+.++...+++.=||
T Consensus 141 ~~LimsdGsatL~frdP 157 (262)
T COG3823 141 KNLIMSDGSATLQFRDP 157 (262)
T ss_pred cceEeeCCceEEEecCH
Confidence 77777666656665444
Done!