BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000695
(1349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 72/163 (44%)
Query: 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426
+G+ E AV +AL L G H A ++LA+V + A AL I
Sbjct: 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99
Query: 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 486
E+ LG DHP + +LAV Y + + A KRAL + G HP+ A N+
Sbjct: 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159
Query: 487 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 529
A++ + G Y +AL+ Q LGPD A + + +A
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 4/184 (2%)
Query: 402 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 461
L + G + A ++AL+ E+ G DHPD LA+ Y + A +
Sbjct: 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92
Query: 462 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 521
AL + T G HP AAT N+A++ G A +AL+ +++LG DH
Sbjct: 93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152
Query: 522 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD---LRTQDAAAWLEYFESKAF 578
A + +A+ Y + Q L+I + KLGPDD +T++ A Y + F
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC-YLKQGKF 211
Query: 579 EQQE 582
+Q E
Sbjct: 212 KQAE 215
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%)
Query: 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425
D+ K +DA ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 426 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 485
E+ LG DHPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 486 VA 487
+A
Sbjct: 201 LA 202
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426
+GK ++A +AL V G H A + LA++ + G + + Y Q+AL+I
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 427 ERELGLDHPDTMKSYGDLAVFYYR 450
+ +LG D P+ K+ +LA Y +
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLK 207
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 373 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 493 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 529
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 426 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 485
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 486 VA 487
+A
Sbjct: 175 LA 176
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 420 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 479
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 480 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 539
AAT N+A++ G A +AL+ +++LG H A +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 540 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 582
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 583 AARNGTRKP 591
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 373 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 493 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 529
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 426 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 485
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 486 VA 487
+A
Sbjct: 175 LA 176
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 420 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 479
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 480 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 539
AAT N+A++ G A +AL+ +++LG H A + +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 540 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 582
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 583 AARNGTRKP 591
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 14 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 486
P + +++ +L YY+ + A++Y ++AL L P +A + N+
Sbjct: 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNL 109
Query: 487 AMMEEGLGNVHVALRYLHKALKCNQR 512
G+ A+ Y KAL+ + R
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 455
A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYD 52
Query: 456 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515
A++Y ++AL L P +A + N+ G+ A+ Y KAL+ + R
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--- 101
Query: 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551
+A +++ + A Y ++++ Q L++
Sbjct: 102 -----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 454
+A A+ L Y GD+++A Y QKAL++ +P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDY 59
Query: 455 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508
+ A++Y ++AL L +PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 454
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 455 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508
+ A++Y ++AL L PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 454
+A A+ L Y GD+ +A Y QKAL+++ P+ ++ +L YY+
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD--------PNNASAWYNLGNAYYKQGDY 59
Query: 455 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508
+ A++Y ++AL L PN A + G+ A+ KAL+
Sbjct: 60 QKAIEYYQKALEL--------DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 454
+A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDY 53
Query: 455 ELALKYVKRALYL 467
+ A++Y ++AL L
Sbjct: 54 DEAIEYYQKALEL 66
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 16 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 427 ER 428
R
Sbjct: 68 PR 69
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 454
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 455 ELALKYVKRALYL 467
+ A++Y ++AL L
Sbjct: 60 DEAIEYYQKALEL 72
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 407 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466
Y DF QA Y +KA D+ E +L V YY+ Q E K +K+A
Sbjct: 17 YKEKDFTQAKKYFEKACDLKENSGCF----------NLGVLYYQGQGVE---KNLKKAAS 63
Query: 467 LLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 506
C ++ N N+ +G+ N + AL+Y KA
Sbjct: 64 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104
>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide
pdb|2BTP|B Chain B, 14-3-3 Protein Theta (Human) Complexed To Peptide
Length = 256
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 391 YHRMTAGAYSLLAVVLYHTGDFNQATI-----YQQKALDINERELGLDHPDTMKSYGDLA 445
Y +M + LA V GD + TI Q+A DI+++E+ HP + + +
Sbjct: 140 YLKMKGDYFRYLAEV--ACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS 197
Query: 446 VFYYR-LQHTELALKYVKRAL 465
VFYY L + ELA K A
Sbjct: 198 VFYYEILNNPELACTLAKTAF 218
>pdb|3EU3|A Chain A, Crystal Structure Of Bdbd From Bacillus Subtilis (Reduced)
pdb|3EU4|A Chain A, Crystal Structure Of Bdbd From Bacillus Subtilis
(Oxidised)
pdb|3GH9|A Chain A, Crystal Structure Of Edta-Treated Bdbd (Oxidised)
pdb|3GHA|A Chain A, Crystal Structure Of Etda-Treated Bdbd (Reduced)
Length = 202
Score = 30.0 bits (66), Expect = 9.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 652 EVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNITEEISSAIHEE 709
E L+E+ D+ET A + E D+D+NQ +I + V + ++ +EI I +E
Sbjct: 134 ETLKENLDKETFASQVEKDSDLNQKMNIQ-ATPTIYVNDKVIKNFADYDEIKETIEKE 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,586,281
Number of Sequences: 62578
Number of extensions: 1434887
Number of successful extensions: 2402
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2373
Number of HSP's gapped (non-prelim): 28
length of query: 1349
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1238
effective length of database: 8,027,179
effective search space: 9937647602
effective search space used: 9937647602
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)