Query 000695
Match_columns 1349
No_of_seqs 715 out of 4337
Neff 5.4
Searched_HMMs 46136
Date Mon Apr 1 22:09:29 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 4E-42 8.6E-47 430.6 33.8 455 128-584 656-1161(1236)
2 PF12807 eIF3_p135: Translatio 100.0 5.2E-31 1.1E-35 278.2 13.5 148 179-327 1-169 (169)
3 KOG1840 Kinesin light chain [C 99.9 1.5E-25 3.4E-30 269.3 33.2 288 350-638 195-484 (508)
4 KOG1839 Uncharacterized protei 99.9 7.3E-28 1.6E-32 303.1 -0.6 613 2-781 392-1014(1236)
5 KOG1840 Kinesin light chain [C 99.9 4.9E-21 1.1E-25 230.7 30.2 234 351-585 238-471 (508)
6 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4.1E-26 228.2 17.7 248 345-638 243-490 (966)
7 KOG4626 O-linked N-acetylgluco 99.8 2.6E-21 5.6E-26 227.1 10.7 251 351-651 215-465 (966)
8 TIGR00990 3a0801s09 mitochondr 99.7 4.3E-16 9.2E-21 194.6 28.4 246 351-637 328-575 (615)
9 TIGR00990 3a0801s09 mitochondr 99.7 4.3E-15 9.3E-20 185.7 25.3 243 356-636 162-499 (615)
10 KOG1130 Predicted G-alpha GTPa 99.7 1.7E-15 3.6E-20 172.6 18.4 281 352-642 53-353 (639)
11 KOG1126 DNA-binding cell divis 99.6 4.3E-14 9.4E-19 170.1 18.3 243 354-636 353-623 (638)
12 TIGR02521 type_IV_pilW type IV 99.6 9.2E-13 2E-17 139.0 26.1 171 351-551 28-198 (234)
13 KOG1130 Predicted G-alpha GTPa 99.6 2.8E-14 6.1E-19 162.8 14.0 275 356-642 19-313 (639)
14 PRK11788 tetratricopeptide rep 99.5 1.5E-12 3.3E-17 152.2 28.2 246 353-635 68-313 (389)
15 PRK11788 tetratricopeptide rep 99.5 1.1E-12 2.3E-17 153.5 25.2 172 354-551 107-278 (389)
16 PRK15174 Vi polysaccharide exp 99.5 1.2E-12 2.6E-17 165.3 26.8 247 354-638 110-386 (656)
17 PRK11189 lipoprotein NlpI; Pro 99.5 4.9E-12 1.1E-16 145.1 25.1 226 368-635 40-267 (296)
18 PRK15174 Vi polysaccharide exp 99.5 3.1E-12 6.8E-17 161.5 25.2 245 354-636 76-350 (656)
19 TIGR02917 PEP_TPR_lipo putativ 99.5 6.9E-12 1.5E-16 158.2 27.5 183 353-564 21-230 (899)
20 KOG1155 Anaphase-promoting com 99.5 6E-12 1.3E-16 146.5 23.3 192 360-584 336-527 (559)
21 PRK11447 cellulose synthase su 99.4 4.5E-12 9.7E-17 169.3 24.9 245 355-632 462-739 (1157)
22 PRK11447 cellulose synthase su 99.4 1.3E-11 2.9E-16 164.8 29.2 257 352-635 301-634 (1157)
23 COG3063 PilF Tfp pilus assembl 99.4 4.6E-12 1E-16 137.6 19.5 169 351-549 32-200 (250)
24 TIGR02917 PEP_TPR_lipo putativ 99.4 2.9E-11 6.3E-16 152.6 27.8 243 354-635 465-734 (899)
25 KOG0547 Translocase of outer m 99.4 7.2E-11 1.6E-15 138.3 27.2 245 352-636 324-569 (606)
26 PRK09782 bacteriophage N4 rece 99.4 1.6E-11 3.5E-16 159.9 24.3 234 353-636 476-709 (987)
27 KOG1126 DNA-binding cell divis 99.4 5.2E-12 1.1E-16 152.6 16.0 231 365-635 330-588 (638)
28 PRK12370 invasion protein regu 99.4 5.3E-11 1.2E-15 147.7 24.5 235 352-635 256-504 (553)
29 PRK12370 invasion protein regu 99.3 7.4E-11 1.6E-15 146.4 24.1 218 367-632 317-534 (553)
30 PRK09782 bacteriophage N4 rece 99.3 7.6E-11 1.7E-15 153.7 25.0 232 357-638 512-745 (987)
31 TIGR02521 type_IV_pilW type IV 99.3 1.3E-10 2.8E-15 122.8 22.2 206 392-633 27-232 (234)
32 PRK04841 transcriptional regul 99.3 4E-10 8.6E-15 146.6 31.5 275 354-638 452-765 (903)
33 TIGR03302 OM_YfiO outer membra 99.3 1.4E-10 3.1E-15 127.2 22.6 178 352-549 31-230 (235)
34 COG3063 PilF Tfp pilus assembl 99.3 1.6E-10 3.4E-15 125.9 21.4 209 392-636 31-239 (250)
35 PRK11189 lipoprotein NlpI; Pro 99.3 8.2E-10 1.8E-14 126.9 28.1 175 352-551 62-265 (296)
36 KOG0547 Translocase of outer m 99.3 8E-11 1.7E-15 137.9 19.2 258 351-638 112-496 (606)
37 KOG1155 Anaphase-promoting com 99.3 1.1E-10 2.3E-15 136.3 19.3 240 361-633 269-536 (559)
38 KOG2002 TPR-containing nuclear 99.3 5E-10 1.1E-14 139.6 24.4 289 311-634 250-560 (1018)
39 KOG2003 TPR repeat-containing 99.2 2.7E-10 5.9E-15 131.4 19.3 221 369-635 471-691 (840)
40 KOG2003 TPR repeat-containing 99.2 5.3E-10 1.1E-14 129.1 20.9 237 354-635 419-657 (840)
41 KOG1129 TPR repeat-containing 99.2 1.4E-10 3E-15 130.5 15.0 237 358-638 227-463 (478)
42 KOG1173 Anaphase-promoting com 99.2 3.5E-10 7.7E-15 134.7 19.2 253 353-636 243-521 (611)
43 TIGR03302 OM_YfiO outer membra 99.2 2.2E-09 4.8E-14 117.8 23.1 182 392-633 29-232 (235)
44 PRK10049 pgaA outer membrane p 99.2 4.3E-09 9.3E-14 135.5 28.8 249 353-635 48-341 (765)
45 PRK10049 pgaA outer membrane p 99.2 5.7E-09 1.2E-13 134.4 29.6 155 359-546 20-174 (765)
46 KOG1125 TPR repeat-containing 99.2 6.5E-10 1.4E-14 133.0 19.3 209 358-638 289-532 (579)
47 PRK04841 transcriptional regul 99.1 1.1E-08 2.4E-13 133.2 29.6 274 357-638 412-725 (903)
48 KOG2002 TPR-containing nuclear 99.1 6.3E-09 1.4E-13 130.0 25.3 253 354-636 270-528 (1018)
49 PF14938 SNAP: Soluble NSF att 99.1 2E-09 4.3E-14 122.9 19.4 153 393-552 32-185 (282)
50 cd05804 StaR_like StaR_like; a 99.1 5.6E-09 1.2E-13 121.0 22.4 171 354-549 43-213 (355)
51 KOG1173 Anaphase-promoting com 99.1 1.2E-09 2.5E-14 130.4 16.8 141 401-563 385-525 (611)
52 KOG1941 Acetylcholine receptor 99.1 1.2E-08 2.5E-13 116.5 23.6 273 353-634 82-361 (518)
53 PF13429 TPR_15: Tetratricopep 99.1 1.7E-10 3.7E-15 130.5 8.7 234 358-636 12-246 (280)
54 PF14938 SNAP: Soluble NSF att 99.1 6E-09 1.3E-13 119.0 21.3 190 354-551 35-225 (282)
55 PF13424 TPR_12: Tetratricopep 99.1 8.3E-10 1.8E-14 101.2 10.0 78 476-554 1-78 (78)
56 KOG1941 Acetylcholine receptor 99.1 5.9E-09 1.3E-13 118.8 18.8 271 355-638 7-280 (518)
57 KOG1129 TPR repeat-containing 99.0 1.5E-09 3.2E-14 122.3 12.5 196 354-586 256-453 (478)
58 PF13424 TPR_12: Tetratricopep 99.0 1.1E-09 2.4E-14 100.4 9.4 78 434-512 1-78 (78)
59 COG2956 Predicted N-acetylgluc 99.0 5.9E-08 1.3E-12 110.0 24.6 241 360-636 41-281 (389)
60 KOG1125 TPR repeat-containing 99.0 5.1E-09 1.1E-13 125.6 17.0 187 347-557 312-533 (579)
61 KOG2076 RNA polymerase III tra 99.0 8.4E-08 1.8E-12 119.7 28.0 173 352-552 137-310 (895)
62 KOG0624 dsRNA-activated protei 99.0 6.7E-08 1.4E-12 109.8 24.4 259 349-636 33-373 (504)
63 cd05804 StaR_like StaR_like; a 99.0 2.4E-08 5.3E-13 115.7 21.6 209 354-632 6-214 (355)
64 PF13429 TPR_15: Tetratricopep 99.0 6.4E-09 1.4E-13 117.7 14.6 236 354-635 44-279 (280)
65 KOG0550 Molecular chaperone (D 98.9 3.4E-08 7.4E-13 114.6 19.1 174 354-553 169-352 (486)
66 TIGR00540 hemY_coli hemY prote 98.9 1.8E-07 3.8E-12 112.3 26.0 245 353-633 83-366 (409)
67 TIGR00540 hemY_coli hemY prote 98.9 2.8E-07 6.1E-12 110.6 27.6 250 354-638 118-404 (409)
68 PRK15359 type III secretion sy 98.9 1.2E-08 2.5E-13 105.6 13.7 125 374-533 13-137 (144)
69 PRK15179 Vi polysaccharide bio 98.9 3.2E-08 6.9E-13 125.4 19.7 170 354-552 48-218 (694)
70 PRK10747 putative protoheme IX 98.9 2.5E-07 5.4E-12 110.8 25.3 244 352-636 82-360 (398)
71 CHL00033 ycf3 photosystem I as 98.9 2E-08 4.4E-13 105.5 14.1 131 436-572 33-163 (168)
72 PRK10747 putative protoheme IX 98.9 2.7E-07 5.8E-12 110.5 24.2 238 357-636 121-393 (398)
73 PRK15179 Vi polysaccharide bio 98.9 6.4E-08 1.4E-12 122.7 19.2 137 350-510 82-218 (694)
74 PRK15359 type III secretion sy 98.8 5.5E-08 1.2E-12 100.6 14.7 123 416-570 13-135 (144)
75 CHL00033 ycf3 photosystem I as 98.8 6.4E-08 1.4E-12 101.8 15.4 123 393-521 32-154 (168)
76 KOG4162 Predicted calmodulin-b 98.8 2.9E-06 6.3E-11 104.9 31.4 250 350-636 474-786 (799)
77 KOG0548 Molecular co-chaperone 98.8 1.3E-07 2.9E-12 113.0 18.9 106 353-468 223-328 (539)
78 KOG1174 Anaphase-promoting com 98.8 5.1E-07 1.1E-11 104.9 22.1 247 353-637 231-504 (564)
79 PRK10370 formate-dependent nit 98.8 1.9E-07 4.2E-12 101.7 17.6 120 367-510 52-174 (198)
80 PRK10370 formate-dependent nit 98.8 3.7E-07 8.1E-12 99.5 19.6 127 409-563 52-181 (198)
81 KOG0548 Molecular co-chaperone 98.7 2.3E-07 5.1E-12 110.9 18.2 199 352-575 255-471 (539)
82 KOG0550 Molecular chaperone (D 98.7 4.6E-08 1E-12 113.6 11.3 288 347-667 42-353 (486)
83 COG2956 Predicted N-acetylgluc 98.7 2.2E-06 4.7E-11 97.7 23.9 174 353-552 106-279 (389)
84 KOG1174 Anaphase-promoting com 98.7 1.3E-07 2.9E-12 109.6 14.5 165 356-552 302-468 (564)
85 KOG0495 HAT repeat protein [RN 98.7 1.3E-05 2.7E-10 97.6 31.5 225 363-638 627-851 (913)
86 KOG0553 TPR repeat-containing 98.7 1.1E-07 2.5E-12 107.4 13.4 124 350-497 77-200 (304)
87 PLN02789 farnesyltranstransfer 98.7 2E-06 4.4E-11 100.4 24.0 170 362-568 45-224 (320)
88 PLN03218 maturation of RBCL 1; 98.7 3E-06 6.5E-11 112.2 26.8 169 355-549 508-676 (1060)
89 PRK02603 photosystem I assembl 98.7 8.6E-07 1.9E-11 93.8 17.7 128 433-573 30-164 (172)
90 PF13525 YfiO: Outer membrane 98.7 2.8E-06 6.1E-11 92.8 22.1 170 353-542 4-198 (203)
91 TIGR02552 LcrH_SycD type III s 98.7 5.3E-07 1.1E-11 90.4 15.2 103 392-510 13-115 (135)
92 PF12569 NARP1: NMDA receptor- 98.7 8.9E-06 1.9E-10 100.4 28.8 268 355-647 5-348 (517)
93 PRK14574 hmsH outer membrane p 98.6 1.5E-06 3.3E-11 112.3 21.5 173 354-564 34-206 (822)
94 PRK02603 photosystem I assembl 98.6 2E-06 4.3E-11 91.1 18.7 115 390-517 29-150 (172)
95 TIGR02552 LcrH_SycD type III s 98.6 5.6E-07 1.2E-11 90.2 13.5 102 434-551 13-114 (135)
96 PRK14720 transcript cleavage f 98.6 1.3E-06 2.8E-11 112.3 19.1 219 388-636 23-255 (906)
97 PLN03218 maturation of RBCL 1; 98.6 7.1E-06 1.5E-10 108.7 26.6 240 354-633 542-783 (1060)
98 TIGR02795 tol_pal_ybgF tol-pal 98.6 6.9E-07 1.5E-11 86.5 13.0 114 439-567 3-116 (119)
99 PRK15363 pathogenicity island 98.6 1.5E-06 3.2E-11 91.3 16.2 102 393-510 32-133 (157)
100 PRK10866 outer membrane biogen 98.6 7.6E-06 1.7E-10 92.1 22.8 174 353-546 31-236 (243)
101 KOG1156 N-terminal acetyltrans 98.6 3.3E-06 7.3E-11 102.8 20.9 243 356-636 9-251 (700)
102 COG5010 TadD Flp pilus assembl 98.5 1.3E-06 2.9E-11 97.3 15.6 156 358-545 70-225 (257)
103 PLN03088 SGT1, suppressor of 98.5 8.6E-07 1.9E-11 104.9 15.2 96 356-467 4-99 (356)
104 PRK15363 pathogenicity island 98.5 1.9E-06 4.1E-11 90.5 15.7 102 351-468 32-133 (157)
105 PF09976 TPR_21: Tetratricopep 98.5 4.3E-06 9.3E-11 86.2 18.2 136 353-507 10-145 (145)
106 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.8E-06 4E-11 83.5 14.1 104 397-510 3-106 (119)
107 PRK14720 transcript cleavage f 98.5 3.6E-06 7.8E-11 108.3 20.4 252 347-645 24-321 (906)
108 PRK14574 hmsH outer membrane p 98.5 1.9E-05 4.2E-10 102.3 26.9 127 359-510 73-199 (822)
109 KOG2076 RNA polymerase III tra 98.5 3.4E-05 7.3E-10 97.2 27.3 131 479-624 413-546 (895)
110 PLN02789 farnesyltranstransfer 98.5 1.9E-05 4.2E-10 92.3 23.3 190 406-632 47-249 (320)
111 PLN03081 pentatricopeptide (PP 98.5 6E-06 1.3E-10 105.6 20.7 237 355-633 291-557 (697)
112 PLN03081 pentatricopeptide (PP 98.5 9.2E-06 2E-10 103.9 22.0 129 396-549 290-418 (697)
113 KOG1585 Protein required for f 98.4 9.9E-05 2.1E-09 81.8 26.0 226 390-627 25-250 (308)
114 PLN03088 SGT1, suppressor of 98.4 2.3E-06 4.9E-11 101.4 14.0 96 399-510 5-100 (356)
115 KOG2376 Signal recognition par 98.4 0.00014 3.1E-09 88.3 28.9 159 358-531 83-271 (652)
116 COG5010 TadD Flp pilus assembl 98.4 3.9E-06 8.5E-11 93.6 14.5 135 347-505 93-227 (257)
117 KOG0553 TPR repeat-containing 98.4 2E-06 4.4E-11 97.5 12.2 122 394-539 79-200 (304)
118 KOG2376 Signal recognition par 98.4 2.4E-05 5.2E-10 94.8 21.5 220 355-635 13-255 (652)
119 COG4783 Putative Zn-dependent 98.4 3.2E-05 6.8E-10 92.5 21.8 163 358-573 310-472 (484)
120 KOG1128 Uncharacterized conser 98.4 5.9E-06 1.3E-10 101.8 15.9 165 361-556 457-621 (777)
121 PF09976 TPR_21: Tetratricopep 98.4 2.3E-05 5.1E-10 80.8 18.2 123 408-549 23-145 (145)
122 PF13525 YfiO: Outer membrane 98.3 3.4E-05 7.4E-10 84.3 19.7 159 437-636 4-173 (203)
123 KOG0624 dsRNA-activated protei 98.3 6E-05 1.3E-09 86.4 21.1 213 391-634 33-253 (504)
124 KOG0495 HAT repeat protein [RN 98.3 9.6E-05 2.1E-09 90.3 23.2 205 398-641 586-790 (913)
125 KOG1585 Protein required for f 98.3 0.00011 2.5E-09 81.4 21.7 191 352-551 29-219 (308)
126 cd00189 TPR Tetratricopeptide 98.3 7E-06 1.5E-10 72.7 10.4 96 398-509 2-97 (100)
127 PLN03077 Protein ECB2; Provisi 98.3 0.00012 2.6E-09 96.0 25.9 166 438-632 554-719 (857)
128 PRK10153 DNA-binding transcrip 98.2 2.2E-05 4.7E-10 97.3 17.1 145 349-510 334-483 (517)
129 KOG1127 TPR repeat-containing 98.2 4.5E-05 9.7E-10 96.4 18.9 233 368-638 472-705 (1238)
130 KOG4162 Predicted calmodulin-b 98.2 0.0009 1.9E-08 83.7 29.6 184 352-554 391-579 (799)
131 cd00189 TPR Tetratricopeptide 98.2 1.2E-05 2.6E-10 71.2 10.3 96 356-467 2-97 (100)
132 PF12688 TPR_5: Tetratrico pep 98.2 2.4E-05 5.1E-10 79.2 12.8 102 397-508 2-103 (120)
133 PRK10866 outer membrane biogen 98.1 0.00016 3.5E-09 81.6 20.5 177 437-628 31-236 (243)
134 PLN03077 Protein ECB2; Provisi 98.1 0.00028 6.1E-09 92.6 25.6 120 488-630 532-651 (857)
135 KOG0543 FKBP-type peptidyl-pro 98.1 3.4E-05 7.5E-10 90.7 15.1 141 352-508 206-354 (397)
136 KOG3617 WD40 and TPR repeat-co 98.1 0.00048 1E-08 85.6 24.5 116 392-509 854-996 (1416)
137 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.7E-10 71.8 8.5 65 395-467 2-67 (69)
138 PRK10803 tol-pal system protei 98.1 4.1E-05 9E-10 87.3 14.7 118 438-570 142-260 (263)
139 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00078 1.7E-08 67.6 22.0 173 354-552 59-232 (291)
140 KOG3060 Uncharacterized conser 98.1 0.00051 1.1E-08 76.8 22.0 157 369-551 27-183 (289)
141 COG3071 HemY Uncharacterized e 98.1 0.00069 1.5E-08 79.7 24.1 176 352-550 82-291 (400)
142 PF13414 TPR_11: TPR repeat; P 98.1 1.7E-05 3.7E-10 70.9 8.7 65 437-509 2-67 (69)
143 PF12895 Apc3: Anaphase-promot 98.0 2.4E-05 5.2E-10 73.2 9.4 84 366-464 1-84 (84)
144 KOG0543 FKBP-type peptidyl-pro 98.0 4.3E-05 9.4E-10 89.9 13.5 105 398-510 210-321 (397)
145 PF12688 TPR_5: Tetratrico pep 98.0 6.4E-05 1.4E-09 76.1 12.9 102 439-550 2-103 (120)
146 PRK10803 tol-pal system protei 98.0 7.9E-05 1.7E-09 85.0 15.2 104 397-510 143-247 (263)
147 KOG3785 Uncharacterized conser 98.0 0.00012 2.6E-09 84.2 15.7 162 364-549 32-212 (557)
148 KOG3060 Uncharacterized conser 98.0 0.0033 7.1E-08 70.6 26.3 162 359-552 57-221 (289)
149 KOG1127 TPR repeat-containing 98.0 0.0033 7.2E-08 80.3 29.0 218 397-636 851-1070(1238)
150 PF12895 Apc3: Anaphase-promot 98.0 3.9E-05 8.5E-10 71.7 9.5 84 450-548 1-84 (84)
151 PF12569 NARP1: NMDA receptor- 97.9 0.0053 1.1E-07 76.4 29.7 146 396-559 194-342 (517)
152 KOG4340 Uncharacterized conser 97.9 0.00012 2.6E-09 82.8 13.9 163 365-551 21-207 (459)
153 KOG1128 Uncharacterized conser 97.9 7.2E-05 1.6E-09 92.6 13.2 217 360-637 404-620 (777)
154 KOG2300 Uncharacterized conser 97.9 0.0018 3.9E-08 77.5 23.7 250 365-629 286-552 (629)
155 PRK10153 DNA-binding transcrip 97.9 0.00021 4.6E-09 88.7 17.0 139 396-562 339-488 (517)
156 KOG1156 N-terminal acetyltrans 97.9 0.00058 1.3E-08 84.0 19.5 171 354-548 41-211 (700)
157 PRK11906 transcriptional regul 97.9 0.00058 1.3E-08 82.3 19.2 163 356-546 257-431 (458)
158 COG4783 Putative Zn-dependent 97.9 0.00086 1.9E-08 80.6 20.2 135 393-551 303-437 (484)
159 KOG2047 mRNA splicing factor [ 97.8 0.014 3E-07 72.1 29.0 268 350-635 244-581 (835)
160 KOG4555 TPR repeat-containing 97.8 0.00071 1.5E-08 69.1 15.2 100 398-509 45-144 (175)
161 COG2909 MalT ATP-dependent tra 97.7 0.023 5E-07 72.8 30.6 262 357-629 418-684 (894)
162 KOG2300 Uncharacterized conser 97.7 0.0023 5E-08 76.6 20.5 204 358-578 327-539 (629)
163 KOG2047 mRNA splicing factor [ 97.7 0.078 1.7E-06 65.9 33.4 184 353-551 386-579 (835)
164 COG0457 NrfG FOG: TPR repeat [ 97.7 0.011 2.4E-07 59.2 22.4 229 368-636 37-268 (291)
165 PF04733 Coatomer_E: Coatomer 97.7 0.00041 8.8E-09 80.3 13.6 170 357-568 105-277 (290)
166 PF13432 TPR_16: Tetratricopep 97.7 0.00015 3.3E-09 64.2 7.8 61 442-510 1-61 (65)
167 KOG4555 TPR repeat-containing 97.6 0.0016 3.6E-08 66.5 15.4 102 354-467 43-144 (175)
168 COG3071 HemY Uncharacterized e 97.6 0.026 5.5E-07 66.9 27.2 241 355-636 119-393 (400)
169 COG4105 ComL DNA uptake lipopr 97.6 0.0074 1.6E-07 68.2 21.9 171 354-544 34-226 (254)
170 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00081 1.8E-08 80.8 15.3 118 402-546 175-292 (395)
171 COG1729 Uncharacterized protei 97.6 0.00036 7.8E-09 79.0 11.6 106 353-468 140-245 (262)
172 KOG3617 WD40 and TPR repeat-co 97.6 0.0041 8.8E-08 77.8 21.2 117 433-551 853-996 (1416)
173 PF13432 TPR_16: Tetratricopep 97.6 0.00029 6.2E-09 62.4 8.5 60 358-425 1-60 (65)
174 KOG1070 rRNA processing protei 97.6 0.0034 7.4E-08 82.4 21.2 189 331-551 1441-1629(1710)
175 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00026 5.6E-09 85.1 10.0 72 433-509 70-141 (453)
176 KOG3616 Selective LIM binding 97.6 0.0095 2.1E-07 73.6 22.9 282 346-635 653-1026(1636)
177 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0039 8.4E-08 68.6 17.8 205 392-633 61-266 (297)
178 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0013 2.8E-08 79.1 15.5 117 362-505 177-293 (395)
179 KOG3785 Uncharacterized conser 97.5 0.0034 7.4E-08 72.7 17.6 134 358-507 61-212 (557)
180 PF08631 SPO22: Meiosis protei 97.5 0.014 3E-07 67.2 22.9 141 364-509 3-150 (278)
181 PRK15331 chaperone protein Sic 97.5 0.00066 1.4E-08 72.1 11.0 102 349-466 32-133 (165)
182 PRK11906 transcriptional regul 97.5 0.0017 3.6E-08 78.4 15.5 162 399-586 258-431 (458)
183 KOG1586 Protein required for f 97.5 0.0095 2.1E-07 66.3 19.8 153 368-550 28-182 (288)
184 PF13374 TPR_10: Tetratricopep 97.5 0.00018 4E-09 57.7 5.0 42 437-478 1-42 (42)
185 KOG1070 rRNA processing protei 97.5 0.0029 6.2E-08 83.0 17.7 215 391-637 1453-1667(1710)
186 KOG1586 Protein required for f 97.4 0.01 2.2E-07 66.0 19.3 183 354-546 34-219 (288)
187 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00045 9.7E-09 83.2 9.7 72 391-467 70-141 (453)
188 COG2909 MalT ATP-dependent tra 97.4 0.16 3.5E-06 65.4 32.2 190 354-554 458-650 (894)
189 COG1729 Uncharacterized protei 97.4 0.0018 3.9E-08 73.5 13.0 102 441-552 144-245 (262)
190 KOG4234 TPR repeat-containing 97.4 0.0015 3.2E-08 71.0 11.5 99 442-551 99-197 (271)
191 PF10345 Cohesin_load: Cohesin 97.3 0.13 2.8E-06 65.7 30.6 156 392-555 55-212 (608)
192 PF13374 TPR_10: Tetratricopep 97.3 0.00031 6.8E-09 56.3 4.8 42 521-562 1-42 (42)
193 COG4235 Cytochrome c biogenesi 97.3 0.0061 1.3E-07 70.1 16.3 121 391-531 151-274 (287)
194 COG4700 Uncharacterized protei 97.3 0.025 5.5E-07 61.2 19.8 175 365-573 67-241 (251)
195 KOG4234 TPR repeat-containing 97.3 0.003 6.4E-08 68.8 12.9 106 351-467 92-197 (271)
196 KOG4648 Uncharacterized conser 97.3 0.0014 3E-08 75.5 11.0 98 354-467 97-194 (536)
197 COG4785 NlpI Lipoprotein NlpI, 97.3 0.0036 7.8E-08 68.8 13.5 172 352-550 63-265 (297)
198 KOG4340 Uncharacterized conser 97.2 0.0088 1.9E-07 68.3 16.0 173 357-545 47-264 (459)
199 PF13512 TPR_18: Tetratricopep 97.2 0.0044 9.5E-08 64.6 12.6 104 354-467 10-128 (142)
200 COG5159 RPN6 26S proteasome re 97.2 0.035 7.6E-07 63.3 20.3 263 358-631 7-312 (421)
201 PRK15331 chaperone protein Sic 97.2 0.0023 4.9E-08 68.1 10.5 103 391-509 32-134 (165)
202 PF10300 DUF3808: Protein of u 97.1 0.018 3.9E-07 71.1 19.4 183 366-568 200-393 (468)
203 PF12968 DUF3856: Domain of Un 97.1 0.02 4.4E-07 57.9 15.7 122 394-516 5-136 (144)
204 KOG3616 Selective LIM binding 97.1 0.047 1E-06 67.9 21.3 152 397-555 662-863 (1636)
205 COG4235 Cytochrome c biogenesi 97.1 0.0061 1.3E-07 70.1 13.3 124 344-487 146-272 (287)
206 COG3898 Uncharacterized membra 97.0 0.96 2.1E-05 54.0 30.7 231 360-636 126-361 (531)
207 PF13512 TPR_18: Tetratricopep 97.0 0.011 2.3E-07 61.8 13.0 106 395-510 9-129 (142)
208 KOG4642 Chaperone-dependent E3 97.0 0.0032 7E-08 70.1 9.6 105 351-471 7-111 (284)
209 PF13371 TPR_9: Tetratricopept 97.0 0.0032 7E-08 56.7 8.1 59 444-510 1-59 (73)
210 PF13371 TPR_9: Tetratricopept 96.9 0.0034 7.4E-08 56.6 7.9 68 486-566 1-68 (73)
211 KOG2471 TPR repeat-containing 96.9 0.023 4.9E-07 68.5 16.0 255 356-638 285-653 (696)
212 COG4105 ComL DNA uptake lipopr 96.9 0.088 1.9E-06 59.8 20.0 158 396-573 34-213 (254)
213 PF09986 DUF2225: Uncharacteri 96.9 0.011 2.5E-07 65.7 12.8 101 366-467 89-194 (214)
214 PF13281 DUF4071: Domain of un 96.8 0.13 2.9E-06 61.6 22.3 152 367-538 112-275 (374)
215 PF14559 TPR_19: Tetratricopep 96.8 0.003 6.5E-08 56.1 6.7 54 406-467 1-54 (68)
216 KOG1915 Cell cycle control pro 96.8 0.41 8.9E-06 58.1 25.6 249 355-633 74-351 (677)
217 KOG3081 Vesicle coat complex C 96.8 0.14 2.9E-06 58.5 20.2 172 356-566 110-281 (299)
218 PF12968 DUF3856: Domain of Un 96.7 0.085 1.8E-06 53.6 16.4 119 354-473 9-135 (144)
219 PF04184 ST7: ST7 protein; In 96.7 0.048 1E-06 66.5 17.3 126 364-505 178-320 (539)
220 PF10345 Cohesin_load: Cohesin 96.7 0.27 5.8E-06 62.8 25.2 197 350-554 55-257 (608)
221 PF14559 TPR_19: Tetratricopep 96.7 0.0043 9.3E-08 55.1 6.6 53 365-425 2-54 (68)
222 KOG1915 Cell cycle control pro 96.7 1.1 2.4E-05 54.5 28.0 188 353-549 206-431 (677)
223 KOG4648 Uncharacterized conser 96.7 0.0067 1.4E-07 70.2 9.5 109 443-572 102-210 (536)
224 PF09986 DUF2225: Uncharacteri 96.7 0.015 3.2E-07 64.8 12.1 100 451-551 90-194 (214)
225 KOG1464 COP9 signalosome, subu 96.7 0.013 2.8E-07 66.2 11.4 227 410-647 41-274 (440)
226 KOG2796 Uncharacterized conser 96.6 0.034 7.4E-07 62.9 14.4 157 354-532 177-333 (366)
227 KOG3081 Vesicle coat complex C 96.6 0.14 2.9E-06 58.5 19.0 141 397-573 109-253 (299)
228 PF04733 Coatomer_E: Coatomer 96.6 0.029 6.2E-07 65.2 14.0 136 357-521 134-272 (290)
229 PF10602 RPN7: 26S proteasome 96.5 0.039 8.4E-07 59.7 13.8 125 419-552 19-143 (177)
230 PF10300 DUF3808: Protein of u 96.5 0.06 1.3E-06 66.6 17.1 135 368-521 247-388 (468)
231 KOG2796 Uncharacterized conser 96.5 0.15 3.2E-06 58.0 17.9 139 397-552 178-316 (366)
232 PF02259 FAT: FAT domain; Int 96.5 0.29 6.3E-06 56.9 21.6 253 355-638 30-292 (352)
233 COG4700 Uncharacterized protei 96.4 0.061 1.3E-06 58.4 14.1 133 357-511 92-224 (251)
234 KOG1463 26S proteasome regulat 96.4 0.17 3.7E-06 59.1 18.5 261 355-632 49-315 (411)
235 PF03704 BTAD: Bacterial trans 96.3 0.079 1.7E-06 54.4 14.1 111 441-559 9-133 (146)
236 PF03704 BTAD: Bacterial trans 96.3 0.11 2.4E-06 53.4 15.1 113 355-475 7-133 (146)
237 KOG4642 Chaperone-dependent E3 96.3 0.0086 1.9E-07 66.8 7.1 98 442-555 14-111 (284)
238 KOG0551 Hsp90 co-chaperone CNS 96.3 0.018 4E-07 66.8 9.8 105 352-468 79-183 (390)
239 PF04184 ST7: ST7 protein; In 96.3 0.062 1.4E-06 65.5 14.6 128 404-547 176-320 (539)
240 KOG2471 TPR repeat-containing 96.2 0.021 4.5E-07 68.8 10.0 131 394-533 238-380 (696)
241 KOG2041 WD40 repeat protein [G 96.2 2 4.3E-05 54.3 26.5 32 391-422 791-822 (1189)
242 PF08631 SPO22: Meiosis protei 96.1 0.68 1.5E-05 53.4 21.7 111 351-466 32-149 (278)
243 KOG2610 Uncharacterized conser 96.1 0.19 4.1E-06 58.7 16.7 167 358-548 107-273 (491)
244 PF10602 RPN7: 26S proteasome 96.0 0.13 2.9E-06 55.6 14.3 126 376-510 18-143 (177)
245 COG3118 Thioredoxin domain-con 96.0 0.31 6.7E-06 56.5 17.5 166 282-466 65-264 (304)
246 KOG1464 COP9 signalosome, subu 95.9 1.1 2.3E-05 51.3 20.8 179 367-553 40-222 (440)
247 KOG0545 Aryl-hydrocarbon recep 95.7 0.093 2E-06 59.0 11.6 106 397-510 179-294 (329)
248 KOG0545 Aryl-hydrocarbon recep 95.7 0.12 2.6E-06 58.2 12.4 106 354-467 178-293 (329)
249 PF12862 Apc5: Anaphase-promot 95.5 0.14 3E-06 49.6 11.1 84 490-575 8-92 (94)
250 PF12862 Apc5: Anaphase-promot 95.5 0.2 4.4E-06 48.5 11.9 82 448-531 8-90 (94)
251 COG2976 Uncharacterized protei 95.4 0.46 1E-05 52.2 15.5 101 438-552 89-189 (207)
252 PF04910 Tcf25: Transcriptiona 95.3 0.92 2E-05 54.5 19.1 152 391-552 35-223 (360)
253 PF11817 Foie-gras_1: Foie gra 95.3 3.3 7.1E-05 47.2 22.7 185 358-546 14-242 (247)
254 COG2976 Uncharacterized protei 95.2 0.64 1.4E-05 51.2 15.7 102 395-510 88-189 (207)
255 PF02259 FAT: FAT domain; Int 95.0 3.3 7.1E-05 48.2 22.4 150 374-535 122-305 (352)
256 KOG2610 Uncharacterized conser 95.0 0.49 1.1E-05 55.4 14.9 132 401-552 108-239 (491)
257 KOG0985 Vesicle coat protein c 94.9 2.6 5.6E-05 55.3 21.8 122 396-550 1104-1248(1666)
258 PF13176 TPR_7: Tetratricopept 94.8 0.057 1.2E-06 43.1 5.0 31 482-512 1-31 (36)
259 PF08626 TRAPPC9-Trs120: Trans 94.7 1.6 3.5E-05 60.1 21.5 158 351-512 239-477 (1185)
260 PF00515 TPR_1: Tetratricopept 94.7 0.059 1.3E-06 41.8 4.8 33 604-636 1-33 (34)
261 PF12739 TRAPPC-Trs85: ER-Golg 94.7 2.1 4.5E-05 52.4 20.3 181 439-636 209-402 (414)
262 COG5159 RPN6 26S proteasome re 94.7 0.7 1.5E-05 53.2 14.7 227 401-638 8-240 (421)
263 PF05843 Suf: Suppressor of fo 94.5 0.3 6.6E-06 56.4 12.1 134 398-552 3-137 (280)
264 PF07719 TPR_2: Tetratricopept 94.5 0.075 1.6E-06 40.8 4.8 33 604-636 1-33 (34)
265 KOG1550 Extracellular protein 94.4 0.67 1.5E-05 58.7 15.8 150 369-551 227-393 (552)
266 PF13176 TPR_7: Tetratricopept 94.4 0.083 1.8E-06 42.1 4.9 31 398-428 1-31 (36)
267 KOG4322 Anaphase-promoting com 94.3 1.3 2.8E-05 53.6 16.6 189 354-549 273-469 (482)
268 COG0790 FOG: TPR repeat, SEL1 94.3 1.5 3.3E-05 50.2 17.1 150 365-551 52-220 (292)
269 PF00515 TPR_1: Tetratricopept 94.3 0.089 1.9E-06 40.8 4.9 31 480-510 1-31 (34)
270 KOG2053 Mitochondrial inherita 94.2 5.4 0.00012 52.1 22.5 111 365-500 20-130 (932)
271 PF13281 DUF4071: Domain of un 94.1 2.1 4.6E-05 51.6 18.1 171 360-551 147-334 (374)
272 COG0790 FOG: TPR repeat, SEL1 94.0 1.9 4E-05 49.5 16.9 144 355-536 74-236 (292)
273 COG3898 Uncharacterized membra 94.0 9 0.0002 46.2 22.1 224 365-633 165-392 (531)
274 KOG0551 Hsp90 co-chaperone CNS 94.0 0.43 9.2E-06 56.0 11.4 106 393-510 78-183 (390)
275 PF05843 Suf: Suppressor of fo 93.6 0.92 2E-05 52.5 13.5 129 361-510 8-137 (280)
276 KOG4814 Uncharacterized conser 93.5 18 0.0004 46.0 24.5 106 439-554 355-460 (872)
277 PF07719 TPR_2: Tetratricopept 93.5 0.15 3.2E-06 39.2 4.7 30 396-425 1-30 (34)
278 PF13181 TPR_8: Tetratricopept 93.4 0.16 3.4E-06 39.2 4.8 32 604-635 1-32 (34)
279 KOG0376 Serine-threonine phosp 93.3 0.07 1.5E-06 64.8 4.0 98 354-467 4-101 (476)
280 PF13428 TPR_14: Tetratricopep 93.3 0.18 4E-06 41.8 5.3 42 397-446 2-43 (44)
281 PF12739 TRAPPC-Trs85: ER-Golg 93.3 3.3 7.1E-05 50.7 18.2 176 356-553 210-401 (414)
282 KOG1463 26S proteasome regulat 93.3 2.8 6.1E-05 49.5 16.4 227 402-638 10-243 (411)
283 PF00244 14-3-3: 14-3-3 protei 93.2 19 0.0004 41.1 23.7 186 356-557 3-204 (236)
284 PF06552 TOM20_plant: Plant sp 93.0 0.54 1.2E-05 51.2 9.5 79 434-513 21-106 (186)
285 PF13431 TPR_17: Tetratricopep 93.0 0.095 2E-06 41.6 2.9 34 418-459 1-34 (34)
286 PF13428 TPR_14: Tetratricopep 92.9 0.21 4.6E-06 41.4 5.2 42 439-488 2-43 (44)
287 KOG4014 Uncharacterized conser 92.7 1.6 3.4E-05 47.7 12.5 158 367-556 40-238 (248)
288 PF13181 TPR_8: Tetratricopept 92.6 0.26 5.6E-06 38.0 5.0 30 481-510 2-31 (34)
289 KOG1308 Hsp70-interacting prot 92.6 0.13 2.8E-06 60.3 4.6 98 354-467 114-211 (377)
290 KOG4563 Cell cycle-regulated h 92.5 0.93 2E-05 53.8 11.3 64 351-414 38-101 (400)
291 COG3118 Thioredoxin domain-con 92.4 6.9 0.00015 45.8 18.0 134 400-560 138-271 (304)
292 KOG2041 WD40 repeat protein [G 92.4 43 0.00092 43.2 26.0 29 352-380 794-822 (1189)
293 KOG1550 Extracellular protein 92.4 3.5 7.6E-05 52.4 17.3 132 355-509 245-393 (552)
294 KOG1538 Uncharacterized conser 92.4 9.5 0.0002 48.3 19.8 50 489-549 782-831 (1081)
295 KOG4814 Uncharacterized conser 92.3 4.9 0.00011 50.7 17.5 105 354-468 354-458 (872)
296 PF06552 TOM20_plant: Plant sp 92.2 0.66 1.4E-05 50.5 9.0 78 392-470 21-105 (186)
297 KOG2561 Adaptor protein NUB1, 92.1 3.5 7.6E-05 50.0 15.5 116 396-513 163-300 (568)
298 PF08626 TRAPPC9-Trs120: Trans 92.0 5.1 0.00011 55.4 19.3 230 395-634 241-553 (1185)
299 PF13431 TPR_17: Tetratricopep 91.9 0.15 3.2E-06 40.5 2.8 34 460-501 1-34 (34)
300 KOG2581 26S proteasome regulat 91.7 5.4 0.00012 48.2 16.4 141 489-636 135-279 (493)
301 KOG1538 Uncharacterized conser 91.7 10 0.00022 48.1 19.0 124 400-546 636-771 (1081)
302 PF04910 Tcf25: Transcriptiona 91.6 7.2 0.00016 47.0 17.9 149 353-510 39-223 (360)
303 KOG1924 RhoA GTPase effector D 91.4 0.54 1.2E-05 59.6 8.2 127 1053-1199 547-679 (1102)
304 smart00101 14_3_3 14-3-3 homol 91.2 33 0.00072 39.4 23.9 188 357-557 4-206 (244)
305 PF08424 NRDE-2: NRDE-2, neces 91.1 20 0.00044 42.4 20.7 162 391-560 14-190 (321)
306 KOG4322 Anaphase-promoting com 91.0 6 0.00013 48.2 15.9 179 388-573 265-448 (482)
307 PF08424 NRDE-2: NRDE-2, neces 90.9 14 0.00029 43.9 19.1 127 371-510 48-184 (321)
308 KOG2053 Mitochondrial inherita 90.9 3.7 8E-05 53.5 15.0 107 409-540 22-128 (932)
309 KOG3783 Uncharacterized conser 90.9 16 0.00035 45.8 19.8 190 356-552 269-521 (546)
310 PF11817 Foie-gras_1: Foie gra 90.8 30 0.00065 39.4 21.0 154 399-554 13-210 (247)
311 KOG1914 mRNA cleavage and poly 90.7 8.8 0.00019 48.0 17.1 176 354-551 286-464 (656)
312 KOG0376 Serine-threonine phosp 90.6 0.37 7.9E-06 58.8 5.6 94 401-510 9-102 (476)
313 KOG1920 IkappaB kinase complex 90.4 20 0.00043 48.6 20.9 100 449-549 919-1026(1265)
314 KOG0985 Vesicle coat protein c 90.4 21 0.00045 47.6 20.5 164 356-552 1106-1309(1666)
315 PF10579 Rapsyn_N: Rapsyn N-te 90.4 2.1 4.5E-05 40.9 9.1 72 353-429 5-76 (80)
316 PF11207 DUF2989: Protein of u 90.2 5.5 0.00012 44.3 13.8 141 372-543 59-199 (203)
317 KOG2581 26S proteasome regulat 89.9 53 0.0012 40.2 22.2 143 361-510 133-277 (493)
318 KOG0686 COP9 signalosome, subu 88.7 3.3 7.1E-05 50.0 11.3 105 437-548 149-255 (466)
319 PF10579 Rapsyn_N: Rapsyn N-te 87.4 4.6 9.9E-05 38.6 9.2 69 483-556 9-77 (80)
320 PF09670 Cas_Cas02710: CRISPR- 87.1 17 0.00037 44.2 16.5 143 352-512 129-273 (379)
321 PF15015 NYD-SP12_N: Spermatog 87.0 6.3 0.00014 47.8 12.3 109 357-473 179-297 (569)
322 KOG0508 Ankyrin repeat protein 87.0 0.81 1.8E-05 55.6 5.1 138 395-535 244-392 (615)
323 PF10952 DUF2753: Protein of u 86.8 6.7 0.00014 40.5 10.7 74 399-472 4-84 (140)
324 KOG0307 Vesicle coat complex C 86.7 4.3 9.4E-05 53.9 11.7 13 1038-1050 778-790 (1049)
325 KOG2422 Uncharacterized conser 86.5 22 0.00047 45.0 16.8 151 475-635 279-450 (665)
326 PF13174 TPR_6: Tetratricopept 86.0 0.97 2.1E-05 34.2 3.5 32 605-636 1-32 (33)
327 PF04781 DUF627: Protein of un 85.9 7.9 0.00017 39.3 10.6 101 360-466 2-106 (111)
328 PF15015 NYD-SP12_N: Spermatog 85.7 13 0.00028 45.2 13.9 101 403-511 183-293 (569)
329 KOG1308 Hsp70-interacting prot 85.4 0.32 7E-06 57.2 0.8 89 405-509 123-211 (377)
330 KOG0687 26S proteasome regulat 85.0 14 0.00031 43.7 13.6 131 414-553 82-212 (393)
331 PF10516 SHNi-TPR: SHNi-TPR; 84.6 1.9 4.1E-05 35.6 4.6 35 397-431 2-36 (38)
332 KOG0508 Ankyrin repeat protein 84.2 8.7 0.00019 47.2 11.7 134 354-491 245-390 (615)
333 PF13174 TPR_6: Tetratricopept 84.0 1.5 3.3E-05 33.1 3.7 28 440-467 2-29 (33)
334 PF04190 DUF410: Protein of un 84.0 90 0.0019 36.1 23.0 148 354-509 10-170 (260)
335 PF10516 SHNi-TPR: SHNi-TPR; 83.7 2.1 4.4E-05 35.3 4.5 36 523-558 2-37 (38)
336 KOG1924 RhoA GTPase effector D 83.5 3.3 7.2E-05 53.0 8.2 10 64-73 24-33 (1102)
337 KOG0686 COP9 signalosome, subu 83.3 7.5 0.00016 47.1 10.7 105 394-506 148-255 (466)
338 PF04190 DUF410: Protein of un 83.1 97 0.0021 35.8 25.6 158 366-552 2-171 (260)
339 KOG4507 Uncharacterized conser 83.1 12 0.00027 47.0 12.5 98 398-509 214-312 (886)
340 COG5187 RPN7 26S proteasome re 83.0 29 0.00064 40.6 14.7 133 369-510 90-222 (412)
341 KOG1914 mRNA cleavage and poly 83.0 1.2E+02 0.0026 38.5 20.7 211 397-635 287-503 (656)
342 COG4649 Uncharacterized protei 82.4 47 0.001 36.6 15.1 132 358-508 62-195 (221)
343 PF09613 HrpB1_HrpK: Bacterial 82.0 14 0.0003 39.9 11.1 92 348-455 4-95 (160)
344 smart00028 TPR Tetratricopepti 81.9 2 4.3E-05 30.3 3.6 29 439-467 2-30 (34)
345 smart00028 TPR Tetratricopepti 81.6 2 4.3E-05 30.3 3.5 31 605-635 2-32 (34)
346 COG5187 RPN7 26S proteasome re 81.5 22 0.00047 41.7 13.0 134 411-553 90-223 (412)
347 KOG4507 Uncharacterized conser 81.2 17 0.00036 45.9 12.8 100 354-467 213-312 (886)
348 KOG0687 26S proteasome regulat 80.6 35 0.00076 40.6 14.4 131 371-510 81-211 (393)
349 PF09670 Cas_Cas02710: CRISPR- 80.4 49 0.0011 40.4 16.5 139 398-554 133-273 (379)
350 PF11207 DUF2989: Protein of u 79.7 8.6 0.00019 42.8 8.9 67 430-501 133-199 (203)
351 PF05053 Menin: Menin; InterP 79.3 26 0.00057 44.3 13.6 95 413-512 254-350 (618)
352 PF04781 DUF627: Protein of un 79.3 26 0.00057 35.6 11.4 101 444-550 2-106 (111)
353 KOG0890 Protein kinase of the 79.1 46 0.001 48.2 17.2 112 348-469 1664-1786(2382)
354 KOG2422 Uncharacterized conser 79.1 86 0.0019 40.0 17.8 172 370-552 254-449 (665)
355 KOG2114 Vacuolar assembly/sort 79.0 24 0.00052 46.3 13.5 49 377-426 350-398 (933)
356 PF10952 DUF2753: Protein of u 78.8 29 0.00063 36.1 11.5 74 483-556 4-84 (140)
357 PF04053 Coatomer_WDAD: Coatom 78.7 70 0.0015 39.9 17.4 49 362-418 269-317 (443)
358 KOG4014 Uncharacterized conser 78.4 34 0.00073 37.9 12.5 132 352-513 66-237 (248)
359 PF07079 DUF1347: Protein of u 78.1 1.9E+02 0.0042 36.2 25.9 135 352-505 377-520 (549)
360 KOG3807 Predicted membrane pro 78.1 96 0.0021 37.1 16.9 95 362-466 192-303 (556)
361 KOG0890 Protein kinase of the 77.8 1.6E+02 0.0035 43.2 21.6 110 434-553 1666-1786(2382)
362 PRK10941 hypothetical protein; 77.4 18 0.00038 42.2 11.1 79 438-529 181-259 (269)
363 PRK13184 pknD serine/threonine 76.7 13 0.00029 49.9 11.1 108 438-552 512-621 (932)
364 KOG1920 IkappaB kinase complex 76.2 3E+02 0.0066 38.1 22.4 25 484-508 1003-1027(1265)
365 KOG1310 WD40 repeat protein [G 76.2 8.9 0.00019 47.7 8.4 97 353-465 373-472 (758)
366 KOG1497 COP9 signalosome, subu 75.9 98 0.0021 37.0 16.1 110 393-508 100-212 (399)
367 PF14853 Fis1_TPR_C: Fis1 C-te 75.4 13 0.00029 32.8 7.2 41 523-568 2-42 (53)
368 KOG2561 Adaptor protein NUB1, 75.0 34 0.00073 42.1 12.5 118 438-556 163-301 (568)
369 PF10373 EST1_DNA_bind: Est1 D 75.0 21 0.00045 40.4 10.8 62 415-492 1-62 (278)
370 PF09613 HrpB1_HrpK: Bacterial 74.8 32 0.00069 37.2 11.2 88 394-497 8-95 (160)
371 KOG3024 Uncharacterized conser 74.8 1.9E+02 0.004 34.3 19.1 137 363-505 15-152 (312)
372 PF10373 EST1_DNA_bind: Est1 D 74.1 41 0.00089 38.0 12.9 62 373-450 1-62 (278)
373 cd09239 BRO1_HD-PTP_like Prote 73.8 1.3E+02 0.0028 36.6 17.5 34 520-553 250-283 (361)
374 smart00101 14_3_3 14-3-3 homol 73.5 70 0.0015 36.9 14.3 57 412-468 144-201 (244)
375 PF14561 TPR_20: Tetratricopep 73.1 21 0.00045 34.8 8.7 33 434-466 18-50 (90)
376 cd09240 BRO1_Alix Protein-inte 71.2 1E+02 0.0022 37.2 15.7 33 521-553 254-286 (346)
377 PRK10941 hypothetical protein; 71.1 24 0.00052 41.1 10.1 84 479-575 180-263 (269)
378 COG4649 Uncharacterized protei 70.8 1.3E+02 0.0028 33.3 14.6 147 362-550 47-195 (221)
379 COG3947 Response regulator con 70.7 29 0.00063 40.8 10.3 78 354-439 279-356 (361)
380 KOG4521 Nuclear pore complex, 70.0 1.5E+02 0.0033 40.6 17.5 183 441-636 923-1135(1480)
381 PF00244 14-3-3: 14-3-3 protei 69.9 2.1E+02 0.0045 32.8 18.0 60 454-513 142-202 (236)
382 KOG0905 Phosphoinositide 3-kin 69.6 19 0.00042 48.5 9.6 46 1044-1095 88-134 (1639)
383 TIGR02561 HrpB1_HrpK type III 68.9 38 0.00083 36.3 10.0 93 347-455 3-95 (153)
384 KOG1258 mRNA processing protei 68.8 3.5E+02 0.0075 34.9 20.9 129 392-543 293-421 (577)
385 PF10255 Paf67: RNA polymerase 68.6 7.2 0.00016 47.7 5.4 74 440-513 124-197 (404)
386 COG5290 IkappaB kinase complex 68.4 1.6E+02 0.0034 38.9 16.7 27 483-509 938-964 (1243)
387 PF10255 Paf67: RNA polymerase 68.2 44 0.00096 41.1 11.9 73 482-555 124-197 (404)
388 TIGR02710 CRISPR-associated pr 68.2 89 0.0019 38.3 14.3 65 353-420 129-195 (380)
389 PRK13184 pknD serine/threonine 68.1 20 0.00042 48.4 9.6 107 364-482 485-591 (932)
390 cd09244 BRO1_Rhophilin Protein 68.0 2.6E+02 0.0056 34.1 18.1 38 350-387 102-148 (350)
391 PF14561 TPR_20: Tetratricopep 67.8 33 0.0007 33.4 8.7 71 476-573 18-88 (90)
392 KOG2375 Protein interacting wi 67.8 30 0.00065 45.2 10.7 99 1039-1166 544-650 (756)
393 KOG2908 26S proteasome regulat 67.2 2.9E+02 0.0064 33.5 18.1 95 447-544 84-179 (380)
394 PF12309 KBP_C: KIF-1 binding 67.0 1.3E+02 0.0028 36.8 15.5 101 410-510 189-332 (371)
395 PF04625 DEC-1_N: DEC-1 protei 66.6 19 0.00041 42.2 7.8 30 1045-1075 60-89 (407)
396 COG3629 DnrI DNA-binding trans 66.6 67 0.0015 37.7 12.4 90 412-519 137-226 (280)
397 cd09246 BRO1_Alix_like_1 Prote 66.3 3E+02 0.0066 33.3 19.2 33 520-552 245-277 (353)
398 cd09034 BRO1_Alix_like Protein 66.2 1.7E+02 0.0037 34.8 16.3 34 521-554 250-283 (345)
399 KOG4521 Nuclear pore complex, 65.2 2.5E+02 0.0055 38.7 18.1 133 347-497 913-1071(1480)
400 KOG3364 Membrane protein invol 65.0 46 0.001 35.3 9.5 81 479-570 31-114 (149)
401 KOG3807 Predicted membrane pro 64.9 1.1E+02 0.0024 36.6 13.5 117 407-539 195-328 (556)
402 PF14853 Fis1_TPR_C: Fis1 C-te 64.0 36 0.00079 30.1 7.4 29 482-510 3-31 (53)
403 PF05053 Menin: Menin; InterP 63.6 73 0.0016 40.5 12.5 71 395-468 276-348 (618)
404 TIGR02710 CRISPR-associated pr 63.0 2.2E+02 0.0048 35.0 16.3 60 485-547 135-196 (380)
405 KOG2236 Uncharacterized conser 62.9 17 0.00037 44.6 6.9 29 1116-1146 451-479 (483)
406 KOG1497 COP9 signalosome, subu 62.8 3.4E+02 0.0074 32.7 21.1 74 478-552 101-174 (399)
407 COG3914 Spy Predicted O-linked 62.8 1.5E+02 0.0033 38.0 15.0 112 388-510 60-172 (620)
408 KOG2114 Vacuolar assembly/sort 62.3 66 0.0014 42.5 12.1 48 419-467 350-397 (933)
409 cd09246 BRO1_Alix_like_1 Prote 61.8 2.4E+02 0.0052 34.2 16.4 40 348-387 105-153 (353)
410 KOG3824 Huntingtin interacting 61.8 18 0.00038 42.6 6.5 66 352-425 114-179 (472)
411 KOG0276 Vesicle coat complex C 61.6 63 0.0014 41.3 11.4 67 482-548 668-747 (794)
412 PF14858 DUF4486: Domain of un 61.3 3.3E+02 0.0072 34.9 17.6 198 339-554 15-229 (542)
413 PF07721 TPR_4: Tetratricopept 61.2 11 0.00023 28.1 3.2 25 439-463 2-26 (26)
414 COG3629 DnrI DNA-binding trans 61.1 1.8E+02 0.0038 34.4 14.5 75 394-476 151-225 (280)
415 KOG4563 Cell cycle-regulated h 60.9 20 0.00043 43.1 6.9 64 480-543 41-104 (400)
416 PRK14707 hypothetical protein; 60.4 2.4E+02 0.0053 41.3 17.3 201 361-563 1006-1208(2710)
417 PF07145 PAM2: Ataxin-2 C-term 60.0 5.4 0.00012 27.9 1.2 13 1151-1163 5-17 (18)
418 PF04053 Coatomer_WDAD: Coatom 59.8 1.3E+02 0.0028 37.6 14.0 64 439-502 348-411 (443)
419 KOG0119 Splicing factor 1/bran 59.6 58 0.0013 40.6 10.5 22 607-628 152-173 (554)
420 KOG0132 RNA polymerase II C-te 59.5 27 0.00058 45.4 8.0 15 222-236 64-78 (894)
421 KOG2034 Vacuolar sorting prote 59.4 1.8E+02 0.0038 39.0 15.2 60 400-470 362-421 (911)
422 cd09242 BRO1_ScBro1_like Prote 59.3 1.9E+02 0.0041 34.9 15.0 37 350-386 103-148 (348)
423 PRK14707 hypothetical protein; 59.1 89 0.0019 45.2 13.1 194 362-561 923-1122(2710)
424 PF07721 TPR_4: Tetratricopept 58.7 10 0.00022 28.2 2.7 25 397-421 2-26 (26)
425 KOG0889 Histone acetyltransfer 57.3 8.1E+02 0.018 38.2 22.2 115 521-638 2728-2846(3550)
426 cd09241 BRO1_ScRim20-like Prot 56.3 2.4E+02 0.0051 34.2 15.1 37 351-387 103-148 (355)
427 KOG2460 Signal recognition par 55.9 2.3E+02 0.0049 36.1 14.7 36 522-557 422-457 (593)
428 COG3947 Response regulator con 54.9 1.1E+02 0.0023 36.4 11.1 73 481-561 280-352 (361)
429 KOG1258 mRNA processing protei 54.7 6E+02 0.013 33.0 24.6 176 351-552 294-471 (577)
430 cd09239 BRO1_HD-PTP_like Prote 54.7 2.6E+02 0.0056 34.0 15.1 39 349-387 109-156 (361)
431 KOG2908 26S proteasome regulat 54.5 4.8E+02 0.01 31.8 19.2 92 405-499 84-176 (380)
432 KOG3783 Uncharacterized conser 54.5 5.8E+02 0.013 32.8 22.2 101 398-510 233-333 (546)
433 TIGR02561 HrpB1_HrpK type III 53.5 1E+02 0.0022 33.2 9.9 86 396-497 10-95 (153)
434 KOG0307 Vesicle coat complex C 53.4 75 0.0016 43.0 10.8 17 603-619 586-602 (1049)
435 cd09243 BRO1_Brox_like Protein 52.9 2.1E+02 0.0046 34.8 13.9 32 521-552 247-278 (353)
436 cd09242 BRO1_ScBro1_like Prote 52.6 2.6E+02 0.0055 33.8 14.6 33 521-553 243-275 (348)
437 KOG3364 Membrane protein invol 51.6 1.1E+02 0.0023 32.6 9.5 69 437-509 31-100 (149)
438 KOG0132 RNA polymerase II C-te 51.5 1.4E+02 0.003 39.4 12.2 13 1076-1089 606-618 (894)
439 cd09244 BRO1_Rhophilin Protein 50.8 2.3E+02 0.0049 34.5 13.7 16 412-427 131-146 (350)
440 PF10858 DUF2659: Protein of u 49.7 4E+02 0.0086 29.4 13.9 102 402-509 99-200 (220)
441 cd09240 BRO1_Alix Protein-inte 49.3 3.3E+02 0.0072 32.8 14.8 38 350-387 115-161 (346)
442 KOG0546 HSP90 co-chaperone CPR 49.2 26 0.00056 42.1 5.3 116 443-571 227-353 (372)
443 COG4976 Predicted methyltransf 48.9 18 0.00038 41.3 3.7 57 487-551 2-58 (287)
444 COG3014 Uncharacterized protei 48.9 5.7E+02 0.012 31.2 15.8 69 401-469 63-156 (449)
445 KOG0994 Extracellular matrix g 48.0 9.9E+02 0.021 33.5 21.4 22 489-510 1534-1555(1758)
446 PF03097 BRO1: BRO1-like domai 47.6 1.3E+02 0.0029 36.1 11.3 35 521-555 238-272 (377)
447 KOG3024 Uncharacterized conser 47.3 2.7E+02 0.0057 33.1 12.7 61 485-546 90-151 (312)
448 PF10858 DUF2659: Protein of u 47.0 2.2E+02 0.0047 31.3 11.1 103 358-466 97-199 (220)
449 KOG2460 Signal recognition par 46.5 7.5E+02 0.016 31.8 32.0 31 606-636 424-454 (593)
450 cd09243 BRO1_Brox_like Protein 46.0 3.2E+02 0.007 33.2 14.0 31 480-510 248-278 (353)
451 cd02681 MIT_calpain7_1 MIT: do 45.8 1.1E+02 0.0025 29.1 8.1 34 353-386 5-38 (76)
452 KOG4672 Uncharacterized conser 45.8 1.5E+02 0.0033 36.3 10.8 18 1151-1168 425-445 (487)
453 KOG1953 Targeting complex (TRA 45.7 2E+02 0.0043 39.1 12.5 54 350-405 241-294 (1235)
454 KOG3824 Huntingtin interacting 45.6 43 0.00094 39.6 6.2 58 402-467 122-179 (472)
455 KOG2070 Guanine nucleotide exc 45.6 54 0.0012 40.7 7.3 73 1097-1198 420-497 (661)
456 PF04097 Nic96: Nup93/Nic96; 45.3 8.3E+02 0.018 31.9 22.8 19 361-379 265-283 (613)
457 TIGR03504 FimV_Cterm FimV C-te 44.6 43 0.00094 28.6 4.6 26 525-550 2-27 (44)
458 cd09241 BRO1_ScRim20-like Prot 44.0 6.7E+02 0.014 30.4 18.1 34 521-554 236-269 (355)
459 PRK15180 Vi polysaccharide bio 43.8 1.1E+02 0.0023 38.3 9.3 125 362-510 297-421 (831)
460 COG3899 Predicted ATPase [Gene 43.4 8.2E+02 0.018 33.3 18.5 109 398-511 441-550 (849)
461 cd02683 MIT_1 MIT: domain cont 43.4 1.3E+02 0.0027 28.7 8.0 37 352-388 4-40 (77)
462 KOG4672 Uncharacterized conser 43.3 79 0.0017 38.6 8.0 23 1100-1122 363-385 (487)
463 KOG4849 mRNA cleavage factor I 43.2 95 0.0021 37.1 8.5 37 1088-1125 288-324 (498)
464 PRK09169 hypothetical protein; 43.1 4.9E+02 0.011 38.8 16.5 119 444-562 669-787 (2316)
465 KOG2034 Vacuolar sorting prote 43.1 3.4E+02 0.0074 36.6 14.1 60 358-428 362-421 (911)
466 cd02681 MIT_calpain7_1 MIT: do 43.0 2.3E+02 0.005 27.0 9.6 32 523-554 7-38 (76)
467 PLN03162 golden-2 like transcr 42.7 58 0.0013 39.0 6.7 37 1060-1096 329-375 (526)
468 KOG1310 WD40 repeat protein [G 42.6 84 0.0018 39.7 8.3 80 452-547 388-470 (758)
469 PF04212 MIT: MIT (microtubule 42.4 2.4E+02 0.0053 25.6 9.6 35 523-557 6-40 (69)
470 KOG1830 Wiskott Aldrich syndro 41.7 6.5E+02 0.014 31.4 15.1 32 1039-1070 246-279 (518)
471 TIGR03504 FimV_Cterm FimV C-te 41.2 50 0.0011 28.2 4.4 25 358-382 3-27 (44)
472 cd02682 MIT_AAA_Arch MIT: doma 40.8 2E+02 0.0044 27.5 8.8 37 521-557 5-41 (75)
473 cd02683 MIT_1 MIT: domain cont 40.5 2.2E+02 0.0047 27.1 9.1 42 525-566 9-51 (77)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 2E+02 0.0044 29.6 9.6 86 452-549 40-126 (126)
475 cd02678 MIT_VPS4 MIT: domain c 39.9 1.6E+02 0.0034 27.6 8.1 37 352-388 4-40 (75)
476 KOG2063 Vacuolar assembly/sort 38.8 8.2E+02 0.018 33.5 16.9 30 353-382 503-532 (877)
477 KOG0276 Vesicle coat complex C 38.5 1E+02 0.0022 39.6 8.2 49 407-468 648-696 (794)
478 COG4976 Predicted methyltransf 38.3 46 0.001 38.1 4.9 56 362-425 3-58 (287)
479 cd09245 BRO1_UmRIM23-like Prot 38.1 8.6E+02 0.019 30.3 16.2 33 521-553 295-327 (413)
480 cd02682 MIT_AAA_Arch MIT: doma 37.6 1.3E+02 0.0028 28.7 7.1 36 353-388 5-40 (75)
481 PF04212 MIT: MIT (microtubule 37.4 1.3E+02 0.0029 27.4 7.0 37 352-388 3-39 (69)
482 cd02684 MIT_2 MIT: domain cont 37.3 1.9E+02 0.0041 27.4 8.1 37 352-388 4-40 (75)
483 cd09247 BRO1_Alix_like_2 Prote 36.5 8.4E+02 0.018 29.4 19.5 36 521-556 252-287 (346)
484 PF07777 MFMR: G-box binding p 35.3 64 0.0014 35.8 5.3 45 1074-1126 31-76 (189)
485 COG3914 Spy Predicted O-linked 34.9 4.9E+02 0.011 33.8 13.2 112 430-552 60-172 (620)
486 cd02679 MIT_spastin MIT: domai 34.7 1.2E+02 0.0026 29.2 6.4 37 437-473 7-43 (79)
487 cd02684 MIT_2 MIT: domain cont 34.1 4.1E+02 0.0088 25.1 9.8 40 528-567 12-52 (75)
488 PF03097 BRO1: BRO1-like domai 34.0 1.5E+02 0.0033 35.7 8.8 36 603-638 238-273 (377)
489 KOG0994 Extracellular matrix g 33.9 1.6E+03 0.034 31.8 22.6 49 330-383 1506-1554(1758)
490 cd09034 BRO1_Alix_like Protein 33.8 8.5E+02 0.018 29.0 15.0 31 480-510 251-281 (345)
491 PF08311 Mad3_BUB1_I: Mad3/BUB 33.6 4.9E+02 0.011 26.8 11.2 121 499-631 4-126 (126)
492 cd02679 MIT_spastin MIT: domai 33.5 1.4E+02 0.0031 28.7 6.7 34 401-434 13-46 (79)
493 PF12881 NUT_N: NUT protein N 33.5 69 0.0015 37.9 5.5 114 1078-1202 6-123 (328)
494 PRK12798 chemotaxis protein; R 33.3 1.1E+03 0.023 29.7 20.8 32 479-510 256-287 (421)
495 cd02656 MIT MIT: domain contai 32.7 2.5E+02 0.0054 26.0 8.2 36 353-388 5-40 (75)
496 PHA02537 M terminase endonucle 32.6 78 0.0017 36.2 5.7 106 363-470 92-210 (230)
497 KOG0128 RNA-binding protein SA 32.5 1.4E+03 0.031 30.9 20.0 150 392-549 109-258 (881)
498 PF12931 Sec16_C: Sec23-bindin 32.0 8.9E+02 0.019 28.4 16.6 132 418-561 99-236 (284)
499 KOG0128 RNA-binding protein SA 31.7 1.5E+03 0.032 30.8 18.8 138 410-555 164-304 (881)
500 cd02678 MIT_VPS4 MIT: domain c 31.7 4.3E+02 0.0094 24.7 9.8 37 527-563 11-48 (75)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=4e-42 Score=430.57 Aligned_cols=455 Identities=27% Similarity=0.399 Sum_probs=407.2
Q ss_pred HHHHhhcCCcccccccc----cccccccccChHHHHHHHHHHHHHchHHHHHHHhccCCCCCcCchhHHHHHHhchhhhh
Q 000695 128 ELALKNLLSDEAFARLK----ESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMR 203 (1349)
Q Consensus 128 ~~~~~~~lspDAFt~~~----~~~~~~e~~~~eelVe~As~yL~~~vIP~fV~D~~s~~~sPiDG~sLTe~LH~rGINmR 203 (1349)
..+...-+|||.|.... ..........+++.+.++.+||....||.||+++..+.++|+||++|+++||..|||+|
T Consensus 656 ~~~~~~~fnp~~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~r 735 (1236)
T KOG1839|consen 656 AVCGPYGFNPAGFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLR 735 (1236)
T ss_pred hhhcccccCccccccCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHH
Confidence 34455669999999831 11222224556778899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHhhhccccCCCCC-------
Q 000695 204 SLGHVVKLSE-------KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLN------- 269 (1349)
Q Consensus 204 YLG~Va~l~~-------~L~~l~~L~i~EMIARAaKhILR~~lr~l~~~~~la~aIAhfLNcLLGs~~~~~~~------- 269 (1349)
|||+++.+.. .+.++-+|++-|+++|++||+|+.++|.+ ...++..+++|||||+|+..++....
T Consensus 736 yLg~~~~~~~~~~~a~~~~v~l~~l~~~ei~~RslKhvlK~~~r~l-~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~ 814 (1236)
T KOG1839|consen 736 YLGKTCGLSHPNTAATYINVALMELGVGEIALRSLKHVLKDNLRLL-GADHIQTAASHALNCLLSVMEAAVQKEQTTLEI 814 (1236)
T ss_pred HhhccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHhhcccccCCCccchHHH
Confidence 9999998753 26788899999999999999999999985 77899999999999999984441100
Q ss_pred ---C---------------------CCCCchHHHHHHHHHHHHhhcccccCCChh------hcchHHHHHHHHHHHhhHH
Q 000695 270 ---K---------------------SHNVHPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRGLCHKVGIEL 319 (1349)
Q Consensus 270 ---k---------------------s~~~~~llw~~I~~~lr~RF~y~L~~~~l~------~l~klaLLReLc~KlGIqL 319 (1349)
+ ..-....+|++|+.....+|.+........ ...++++.+..|.+.||+.
T Consensus 815 ~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 894 (1236)
T KOG1839|consen 815 LKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQK 894 (1236)
T ss_pred HhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcch
Confidence 0 001235689999999888888877654433 4557889999999999999
Q ss_pred hhccccCCCC---CCchHHHHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhH
Q 000695 320 VSRDFDMDSP---SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTA 396 (1349)
Q Consensus 320 ~aRdY~fdsa---~~F~~eDIl~LvPvvK~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A 396 (1349)
..+.|+|+.. ..|..+||+++.|++|+..+...++...++.|...+.+|.+.+|.+ .-+++.++..++|..|++++
T Consensus 895 ~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~ 973 (1236)
T KOG1839|consen 895 PARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVA 973 (1236)
T ss_pred hhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHH
Confidence 9999999884 7899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+|..|+.++..+|++++|+.+.++|+.+.++..|.+++++...|.+|+.+++..++...|+..+.++++++...+|++|
T Consensus 974 ~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~h 1053 (1236)
T KOG1839|consen 974 SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDH 1053 (1236)
T ss_pred HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
|.++.+..+++.++...++++.|+++++.|+++..+++|+.+..++.++..+|+++..++++..|+.+.+.++.||+..+
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 000695 557 GPDDLRTQDAAAWLEYFESKAFEQQEAA 584 (1349)
Q Consensus 557 G~dhp~T~eal~~La~L~qk~~eqAEAl 584 (1349)
|++|.++.++..|+......+...+.++
T Consensus 1134 g~~hsrt~~S~~~~~~~T~~~v~~Qk~~ 1161 (1236)
T KOG1839|consen 1134 GPDHSRTKESSEWLNLSTAIAVKIQKKL 1161 (1236)
T ss_pred CCCcccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999999987766666555544
No 2
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.97 E-value=5.2e-31 Score=278.16 Aligned_cols=148 Identities=36% Similarity=0.673 Sum_probs=131.3
Q ss_pred ccCCCCCcCchhHHHHHHhchhhhhhhhhHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 000695 179 GSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLS-EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALN 257 (1349)
Q Consensus 179 ~s~~~sPiDG~sLTe~LH~rGINmRYLG~Va~l~-~~L~~l~~L~i~EMIARAaKhILR~~lr~l~~~~~la~aIAhfLN 257 (1349)
+++++.|+||.+|++.||++||||||||+|+.++ +.+++++.||++|||||++|||||.+++.+ +...+..+|+||||
T Consensus 1 ~~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~~-~~~~~~~~v~~~lN 79 (169)
T PF12807_consen 1 CSLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRSV-PQSELSSAVSHFLN 79 (169)
T ss_pred CCccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHH
Confidence 4577899999999999999999999999999986 468999999999999999999999999995 66899999999999
Q ss_pred hhhccccCCCCCC-----------------CCCCchHHHHHHHHHHHHhhcccccCCChh---hcchHHHHHHHHHHHhh
Q 000695 258 LMLGVHESDGLNK-----------------SHNVHPLVWRWLELFLMKRYEWDLNGLNFK---DVRKFAILRGLCHKVGI 317 (1349)
Q Consensus 258 cLLGs~~~~~~~k-----------------s~~~~~llw~~I~~~lr~RF~y~L~~~~l~---~l~klaLLReLc~KlGI 317 (1349)
||||...+..... ..-....+|++|+.++..||+|+++.+++. .+++++|||+||+++||
T Consensus 80 ~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~Gi 159 (169)
T PF12807_consen 80 CLLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGI 159 (169)
T ss_pred HhhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCe
Confidence 9999866542110 011235799999999999999999999998 89999999999999999
Q ss_pred HHhhccccCC
Q 000695 318 ELVSRDFDMD 327 (1349)
Q Consensus 318 qL~aRdY~fd 327 (1349)
|+.+|+|+|+
T Consensus 160 Ql~~r~Y~f~ 169 (169)
T PF12807_consen 160 QLLARDYDFT 169 (169)
T ss_pred EeeeecCCCC
Confidence 9999999985
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.95 E-value=1.5e-25 Score=269.28 Aligned_cols=288 Identities=24% Similarity=0.288 Sum_probs=265.5
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
.+.....+..++..|..+|+|+.|+.+|++|+.+..+.+|.+|+.++..+..+|.+|..+++|.+|+.+|++|+.+.+.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 34445566668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
+|.+|+.++.++.|||.+|...|+|++|..++++|+.|++..+|..|+.++..+.+++.++..++++++|+.+|++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHhHHHHHHHHhc
Q 000695 510 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNG 587 (1349)
Q Consensus 510 ~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~--qk~~eqAEAl~~~ 587 (1349)
....+|.+++.++..+.+||.+|..+|+|.+|.++|++|+.+.+...|..+..+...+..|+..+ .+.++.+..++..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888887444 3444545555555
Q ss_pred cCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 588 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 588 a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
...+. .....+|+++...|.+|+.+|.++|+|+.|+++.++++..+..-.
T Consensus 435 ~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 435 AKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 55555 667788999999999999999999999999999999999988755
No 4
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.93 E-value=7.3e-28 Score=303.12 Aligned_cols=613 Identities=41% Similarity=0.527 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHhhhccCCCCccceeeechhHHHHHhhhhhhhhhhhhhhHHHHhhhhhhhhccccccccCCccchhhhhc
Q 000695 2 FVERLLEESIAKLEEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNN 81 (1349)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1349)
.++.+|..+|.+++....+..+ ++|+|||||+| +.+++-..+ +...+..++.|+|||+++..++..
T Consensus 392 ~~qm~i~~nIf~s~~~dv~~~y----~~~g~dvaa~~-a~s~dl~g~---------r~~n~~d~~~l~~Lgt~~vDy~g~ 457 (1236)
T KOG1839|consen 392 ILQMFIWNNIFFSEGFDVRGHY----KLGGGDVAAYA-APSTDLNGK---------RLYNTVDVPGLKTLGTTVVDYRGY 457 (1236)
T ss_pred HHHHHHHhhhheeeeccccccc----cccchhHHhhh-hcccccccc---------ccccccchhhhcchhheeeeccCc
Confidence 5788999999999999888776 99999999999 445442222 234466899999999999999999
Q ss_pred ccccCCCCC-cccccccccccCCCcccccccchhhHHHhhhhhhhhhHHHHhhcCCcccccccccccccccccChHHHHH
Q 000695 82 RKKSEGSNH-KIHSETLKSQADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELID 160 (1349)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lspDAFt~~~~~~~~~e~~~~eelVe 160 (1349)
+.+..+... ... +++. .+. ....-...++..++.++|.+..+..++........++.
T Consensus 458 rv~Aq~i~~p~~l-------------~~d~-------~~~--~~~g~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~ 515 (1236)
T KOG1839|consen 458 RVVAQVIINPGIL-------------EGDQ-------SQS--VIYGPVDEGKELLSEEAYQRLLERASKLLLISPHPVIN 515 (1236)
T ss_pred eEEEEeecCCcch-------------hccc-------ccc--eeeccccccccccccHHHHHhhcccccccccCCccccc
Confidence 998876552 111 1110 000 00111222677788889999999998888888888888
Q ss_pred HHHHHHHHchHHHHHHHhccCCCCCcCch-hHHHHHHhchhhhhhhh--hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000695 161 LSHNYYVEVALPKLVTDFGSLELSPVDGR-TLTDFMHTRGLQMRSLG--HVVKLSEKLSHVQSLCIHEMIVRAFKHIIQA 237 (1349)
Q Consensus 161 ~As~yL~~~vIP~fV~D~~s~~~sPiDG~-sLTe~LH~rGINmRYLG--~Va~l~~~L~~l~~L~i~EMIARAaKhILR~ 237 (1349)
++-. +.+++...+.+..+.++||+ .|.++||.++..||||| ++..+..+++|...+|..|||.|.++|.+..
T Consensus 516 ~~d~-----~~~eL~~s~eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~ 590 (1236)
T KOG1839|consen 516 AKDT-----VLPELGISFESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLA 590 (1236)
T ss_pred hhhc-----cccccccccccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHH
Confidence 7733 77888888999999999999 69999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhCChhHHHHHHHHHHHhhhccccCCCCCCCCCCchHHHHHHHHHHHHhhcccccCCChhhcchHHHHHHHHHHHhh
Q 000695 238 VISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGI 317 (1349)
Q Consensus 238 ~lr~l~~~~~la~aIAhfLNcLLGs~~~~~~~ks~~~~~llw~~I~~~lr~RF~y~L~~~~l~~l~klaLLReLc~KlGI 317 (1349)
.+..+. |+. .
T Consensus 591 ~i~~~e-------------~~~-------------~-------------------------------------------- 600 (1236)
T KOG1839|consen 591 FIVAVE-------------NAA-------------E-------------------------------------------- 600 (1236)
T ss_pred HHHHHh-------------cch-------------h--------------------------------------------
Confidence 887741 110 0
Q ss_pred HHhhccccCCCCCCchHHHHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHH
Q 000695 318 ELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG 397 (1349)
Q Consensus 318 qL~aRdY~fdsa~~F~~eDIl~LvPvvK~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ 397 (1349)
+|.++...+|...|++.+.+++++..+.+.+.+ +. ..-..++|.+++..++......+++.+....-
T Consensus 601 -----~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~---eS-----~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~ 667 (1236)
T KOG1839|consen 601 -----DYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR---ES-----SKLSLDDAVKYATKALVKLVAVCGPYGFNPAG 667 (1236)
T ss_pred -----hccCCccccccccchhhHHHHHHHHHhhccccc---cc-----cccchHHHHHHHHHHHHHHHhhhcccccCccc
Confidence 677788888888999999999999888777776 11 12234589999889988888888888777666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 477 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP 477 (1349)
++.+ +.++...+++.+|..+.++++++.++.+|.++|+++..|..++.++++...+.+|+.+-.+++.+....++..|+
T Consensus 668 f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~ 746 (1236)
T KOG1839|consen 668 FYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHP 746 (1236)
T ss_pred cccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCc
Confidence 6655 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcC
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG 557 (1349)
..+.+|.+.+++-...+ +-++++++.+++...+.+|.+|..++.+ +.|+.++.-++. |....+..+++++..
T Consensus 747 ~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~---av~~~~t~~~~~ka~-- 818 (1236)
T KOG1839|consen 747 NTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEA---AVQKEQTTLEILKAK-- 818 (1236)
T ss_pred cccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccc---cCCCccchHHHHhhh--
Confidence 99999988888877777 8999999999999999999999998888 677776655444 444444444444332
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccc
Q 000695 558 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 637 (1349)
Q Consensus 558 ~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl 637 (1349)
+..+ +.+. .+...++..+...+|.....+|.+|..-....+.+.....++.+++......
T Consensus 819 --~~~~-----------------~~~~-~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~ 878 (1236)
T KOG1839|consen 819 --DLRT-----------------QDAA-AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKS 878 (1236)
T ss_pred --hhhh-----------------hhhc-cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccc
Confidence 0000 0111 1556667777888888999999998877666677777777777777765553
Q ss_pred cCCCCCCCCCCCchhhcccCCccCCCCCCCCCCCccccCCCCCcchhhhhhhhccccCCCc--cc---hhcccccccCCC
Q 000695 638 YQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESAVEKPNI--TE---EISSAIHEEGDD 712 (1349)
Q Consensus 638 ~qn~~ta~~~l~~~e~~~~~sdE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~d~ 712 (1349)
.-.....+.+-...+....+.+.+-. +. ...+...+....-...+.+.. .. ..+.-+....++
T Consensus 879 ~~~~~~~~~~~~~i~~~~r~~~~e~~---------~~---ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~ 946 (1236)
T KOG1839|consen 879 KIAVEKLEKKKRELQKPARNYDFESS---------EP---KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLED 946 (1236)
T ss_pred hhHHHHHHHHhhhcchhhhhcccccc---------CC---CCCCCcccccccccccccCCCccchhhhhhhhhhhhhccc
Confidence 32222222221122222222221110 00 011111111111122222222 11 122346778899
Q ss_pred Ccccc-ccccCCCccccccccccccccccccccccccccccccccccCCCCCCcceecccCcCCCCCCCC
Q 000695 713 GWQPV-QRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAVSHGSSAD 781 (1349)
Q Consensus 713 g~q~~-~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~~~r~~~~~~~~~ 781 (1349)
||+|+ -+|||.+..++.++.++|.+++.|.|..+......||..++ .+.-++++.+.|...-.++.+
T Consensus 947 ~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai--~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 947 GFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAI--AQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred chhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHH--HhcccceeeechhccCCCHHH
Confidence 99997 45999999999999999999999999999999999998887 356688899999988766544
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.89 E-value=4.9e-21 Score=230.65 Aligned_cols=234 Identities=24% Similarity=0.267 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+..+..+|..|..+++|.+|+.+|++||.+.+.++|.+|+.++.++.+||.+|+..|+|++|..++++|+.|+++.+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 34455555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
|..++++...+.+++.++..++++++|+.+|++++.++....|++|+.++.++.+||.+|+.+|+|++|.++|++|+.+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 585 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~ 585 (1349)
++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. +..|++|+.+...+.+|+.++...+....|..
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 999998899999999999999999999999999999999999 99999999999999999988877665555443
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-21 Score=228.18 Aligned_cols=248 Identities=18% Similarity=0.132 Sum_probs=217.3
Q ss_pred hhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000695 345 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 424 (1349)
Q Consensus 345 K~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALe 424 (1349)
+.+........+++++|.+|-..+.|+.|+.+|.+|+.+ .|..+.++.+||.+|+++|+.+-|+..|++||+
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 334455666788999999999999999999999999966 577889999999999999999999999999998
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000695 425 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 504 (1349)
Q Consensus 425 I~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Le 504 (1349)
+ .|....+|+|||.++...|+..+|+.+|.+||.++ |..+.+++|||.+|..+|.+++|..+|+
T Consensus 315 ~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 315 L--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred c--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 7 57888999999999999999999999999999873 4457889999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 000695 505 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 584 (1349)
Q Consensus 505 kALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl 584 (1349)
+|+++. +..+.++.|||.+|.++|++++|+.+|++|++| .|..++++.+++..++..++...|+
T Consensus 379 ~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 379 KALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHH
Confidence 999986 667899999999999999999999999999987 5777889999988777777776666
Q ss_pred HhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 585 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 585 ~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.....++. -.+..++++.+||.+|...|+..+|+..|++||+|++.+-
T Consensus 443 q~y~rAI~------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 443 QCYTRAIQ------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHh------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 65444333 3457899999999999999999999999999999988644
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-21 Score=227.07 Aligned_cols=251 Identities=18% Similarity=0.142 Sum_probs=219.7
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+-.+-++|.++..+|+...|+..|.+|+.+ +|....+|.+||.+|.+++.|+.|+..|.+|+.+
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----- 281 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----- 281 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence 345556778889999999999999999999976 7889999999999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.|..+.++.|||.+|+.+|..+.|+.+|++||++ .|....+|+|||.++...|+..+|..+|.+||.++
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999985 57788999999999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 590 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a 590 (1349)
+..+.+++|||.+|..+|.+++|..+|++|++++ +..+.+..+|+.++++++...+|+.....+
T Consensus 351 --------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 351 --------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred --------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 4457889999999999999999999999999875 556778889999988888888887765444
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccccCCCCCCCCCCCch
Q 000695 591 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSK 651 (1349)
Q Consensus 591 ~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~qn~~ta~~~l~~~ 651 (1349)
+. -.+..+++|.++|..|..+|+...|++.|.+|+.+.+... .+|.++.+.
T Consensus 415 lr------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A----eAhsNLasi 465 (966)
T KOG4626|consen 415 LR------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA----EAHSNLASI 465 (966)
T ss_pred Hh------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH----HHHhhHHHH
Confidence 33 2347889999999999999999999999999999988654 445555443
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=4.3e-16 Score=194.65 Aligned_cols=246 Identities=14% Similarity=0.066 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+..+..+|.+++.+|++++|+..|++++.+ +|....+|..+|.++..+|++++|+.+|++++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL----- 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 456677888999999999999999999999976 5677889999999999999999999999999886
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.|....+++++|.+|+.+|++++|+.+|++++.+ .|.....+.++|.++..+|++++|+.+|++++...
T Consensus 395 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 395 ---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3556788999999999999999999999999985 35566788999999999999999999999999764
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHhHHHHHHHHhcc
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNGT 588 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~--qk~~eqAEAl~~~a 588 (1349)
+....++..+|.+|..+|++++|+.+|++|+.+..... ..+............+. .+.++.+..+....
T Consensus 464 --------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 --------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred --------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33466788999999999999999999999998743211 11111111111111122 23333333333222
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccc
Q 000695 589 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 637 (1349)
Q Consensus 589 ~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl 637 (1349)
...+ +....++..+|.++..+|++++|+.+|++|+++.++.
T Consensus 535 l~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 535 LIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 2211 2334578899999999999999999999999998763
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=4.3e-15 Score=185.70 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL------------ 423 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKAL------------ 423 (1349)
.++.+|.+|+..|++++|+..|.+++.+ +|....++..+|.+|..+|++++|+..|.+++
T Consensus 162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 162 YYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4678889999999999999999999876 56778899999999999999999976554332
Q ss_pred --------------------------------------------------------------------------------
Q 000695 424 -------------------------------------------------------------------------------- 423 (1349)
Q Consensus 424 -------------------------------------------------------------------------------- 423 (1349)
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence
Q ss_pred -HHHHHhcC--CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 000695 424 -DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 500 (1349)
Q Consensus 424 -eI~ErilG--~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAl 500 (1349)
..+++.+. ...+....++.++|.+++.+|++++|+.+|++++.+ .|....++.++|.++..+|++++|+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 11122211 123556677888899999999999999999998875 4566778889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH
Q 000695 501 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 580 (1349)
Q Consensus 501 e~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq 580 (1349)
.+|++++++. ++ ...+++.+|.+|..+|++++|+.+|++++.+ .+++.. .+..|+.+....++.
T Consensus 386 ~~~~~al~~~-----p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~---~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 386 EDFDKALKLN-----SE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIF---SHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHH---HHHHHHHHHHHCCCH
Confidence 9999988763 23 3567888999999999999999999999876 344443 333444444333333
Q ss_pred HHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 581 QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 581 AEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.+++....... ...+....++.++|.++..+|++++|+.+|++|+++.+.
T Consensus 450 ~eA~~~~~~al------~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 450 ASSMATFRRCK------KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHH------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 33332211111 112344677899999999999999999999999998765
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-15 Score=172.64 Aligned_cols=281 Identities=15% Similarity=0.099 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
.....+.++|..|+..++|++|++|..--|.+.+.+ .+...-+.+..+||.++-.+|.|++|+.++.+-|.+.+++ |
T Consensus 53 tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-g 129 (639)
T KOG1130|consen 53 TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-G 129 (639)
T ss_pred HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH-h
Confidence 345567788999999999999999998888776654 3445567788899999999999999999999999998775 3
Q ss_pred CCCchhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 491 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGd--------------------yeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~ 491 (1349)
|...-.++|+|||.+|...|+ ++.|.++|..-|++.+.+. +......+|.|||..|+
T Consensus 130 -Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 130 -DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYY 206 (639)
T ss_pred -HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceee
Confidence 344567899999999999886 4667778877777776653 34456789999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000695 492 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 571 (1349)
Q Consensus 492 ~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La 571 (1349)
-+|+|+.|+.+.+.-|.+.++. | +....-.++.|||.+|.-+|+|+.|++||++++.+..+. |.. ..-++...-|+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r-~vEAQscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNR-TVEAQSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cch-hHHHHHHHHhh
Confidence 9999999999999999998765 3 334456789999999999999999999999999988765 433 22334445555
Q ss_pred HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccccCCCC
Q 000695 572 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 642 (1349)
Q Consensus 572 ~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~qn~~ 642 (1349)
..+.-..+.++|+.+..+++.+.....+......+++.||.+|.+.|+.++|+.+.++++++...+++..+
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg 353 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG 353 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch
Confidence 55544555666666555555544444555567788999999999999999999999999999888775443
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.3e-14 Score=170.15 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------HHHhhCCCChhhHHHHHHHHHHHH
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVVLY 407 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel--------------------------~eqvlG~dhp~~A~ay~~LA~ay~ 407 (1349)
...+.++|+.|+..++|++|..+|+.+-.+ +.+.+-..++....+|..+|.||.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 377888999999999999999999877643 111122345566678999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000695 408 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 487 (1349)
Q Consensus 408 ~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA 487 (1349)
.+++++.|+.+|++|+++ +|..+.+|..+|.-+..+.+||.|..+|+.||.+ .|....+|+.||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 999999999999999987 5778899999999999999999999999999975 455678999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 567 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal 567 (1349)
++|.++++++.|+-+|++|+++. |....++..+|.+|.++|+.++|+++|++|+.+ .+.++....-.
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~l~~~~~ 563 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNPLCKYHR 563 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCchhHHHH
Confidence 99999999999999999999985 455666777999999999999999999999854 66666555444
Q ss_pred HHHHHHHHHhHHHHH-HHH-hccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 568 AWLEYFESKAFEQQE-AAR-NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 568 ~~La~L~qk~~eqAE-Al~-~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
..+..... .++.+. .++ ..... +.-+-++..+|.+|...|+.+.|+..|--|+++.++
T Consensus 564 ~~il~~~~-~~~eal~~LEeLk~~v----------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLG-RYVEALQELEELKELV----------PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHhC----------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44432221 122211 111 11222 234567899999999999999999999999999887
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=9.2e-13 Score=139.03 Aligned_cols=171 Identities=21% Similarity=0.218 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+..++.+|..++..|++++|+.++++++.. ++....++..+|.+|..+|++++|+.++++++.+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 345777888999999999999999999999865 4556788999999999999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+.....+.++|.+|...|++++|+.+|++++... .++.....+.++|.++...|++++|+.+|++++...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23455788999999999999999999999998742 234456678899999999999999999999999864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
++ ....+..+|.++..+|++++|+.++++++.+
T Consensus 166 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2456788999999999999999999988765
No 13
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-14 Score=162.79 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.|-..|.-++..|++...+.+|+.|++.-. .+-.....+|..||.+|+.+++|++|++|..--|.+.+ .+| |..
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-~lg-dkl 92 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-LLG-DKL 92 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-Hhc-chh
Confidence 344557778899999999999999998733 22344566899999999999999999999988777644 334 334
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC--------------------
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------------------- 495 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGd-------------------- 495 (1349)
..+.+..|||..+..+|.|++|+.++.+-|.+.+.+. +...-..+|+|||.+|...|+
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 5678889999999999999999999999999988865 445567899999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000695 496 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 575 (1349)
Q Consensus 496 ydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~q 575 (1349)
++.|.++|++-|++.+++ .+......+|-+||..|+.+|+|+.|+.+.+.-+.|.++. |.. .....+..+|+....
T Consensus 171 l~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDr-AaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDR-AAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhH-HHHHHhhcccchhhh
Confidence 345667777777776654 3445567899999999999999999999999999888665 322 222334444443322
Q ss_pred HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccccCCCC
Q 000695 576 KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 642 (1349)
Q Consensus 576 k~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~qn~~ 642 (1349)
-.++...|+....+.....+..++..--++..+.||..|.-..+|++|+.|+++-|+|...+.+.-+
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222222222222222222223333345778999999999999999999999999999777664433
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.55 E-value=1.5e-12 Score=152.16 Aligned_cols=246 Identities=13% Similarity=0.034 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++.+|..+...|++++|+.++++++... .........++..||.+|...|++++|+.+|.+++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------- 136 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------- 136 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------
Confidence 34555666666666666666666666555320 0011223345666666666666666666666666543
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
.+....++..++.++...|++++|++++++++.... ..........+.++|.++..+|++++|+.+|+++++..
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 210 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-- 210 (389)
T ss_pred -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--
Confidence 233455666666666666777777666666554310 01111234455566666666777777777776666542
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 592 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d 592 (1349)
+....+++.+|.+|...|++++|+.++++++.. ++.+ ...+...|+.++....+..++.........
T Consensus 211 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 211 ------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEY--LSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred ------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Chhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223445566666676777777776666666543 1211 112223333332222222222221111000
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 593 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 593 ~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
..+.. ..+..++.++...|++++|+..|+++++..+
T Consensus 278 ------~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 278 ------EYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred ------hCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 01111 2235666666667777777777777666643
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=1.1e-12 Score=153.49 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..+|..|...|++++|+.+|.+++.. ++....++..++.+|...|++++|+..+++++.... ...
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 175 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSL 175 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---Ccc
Confidence 355677777777778888887777777643 344456777777777778888888777777665411 011
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
.......+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++...
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--- 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
Confidence 1123445667777777788888888888777764 23345566777777777888888888777777542
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+ .....++..++.+|...|++++|+.++++++++
T Consensus 245 --p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 245 --P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred --h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 122455667777777778888887777777654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=1.2e-12 Score=165.28 Aligned_cols=247 Identities=13% Similarity=-0.005 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 426 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~------- 426 (1349)
...++.+|..+...|++++|+..|.+++.+ .|....++..+|.+|..+|++++|+..+++++...
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 344566677777778888888777777765 34455566677777777777777777666554321
Q ss_pred -------------------HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000695 427 -------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 487 (1349)
Q Consensus 427 -------------------ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA 487 (1349)
++.+..+.......+..++.++...|++++|+..|++++.+ +|....++.++|
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLG 253 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Confidence 01111111111223345567777888888888888887763 355677888999
Q ss_pred HHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 000695 488 MMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 563 (1349)
Q Consensus 488 ~iy~~lGdyde----Ale~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T 563 (1349)
.+|..+|++++ |+.+|++++++. |....++.++|.+|..+|++++|+.++++++.+ .++++..
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a 320 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYV 320 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 99999999986 799999998864 345678889999999999999999999999875 4666643
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 564 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 564 ~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
...|+.+....++..+++....... ..++.....+..++.++...|++++|+.+|++++++.++..
T Consensus 321 ---~~~La~~l~~~G~~~eA~~~l~~al------~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 ---RAMYARALRQVGQYTAASDEFVQLA------REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHH------HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3444444444444444333221111 01122334566678899999999999999999999988754
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=4.9e-12 Score=145.05 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=162.4
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000695 368 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 447 (1349)
Q Consensus 368 GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~l 447 (1349)
+..+.++..+.+++.... .+....+..|+.+|.+|...|++++|+..|++|+.+ .|+...+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 355677777877775421 234456889999999999999999999999999986 46678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 527 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~n 527 (1349)
|...|++++|+..|++++++ .|....++.++|.+|...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999985 35567789999999999999999999999999864 444421 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC--CCchhhhhcCCCcHHH
Q 000695 528 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR--KPDASIASKGHLSVSD 605 (1349)
Q Consensus 528 LA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~--a~d~~ia~k~h~svae 605 (1349)
..++...+++++|+..+.++.... .++.... .+..+.......++++..... ...... .+...+
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~~l----~~~~~e 237 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL----DKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNTEL----AERLCE 237 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC----CccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcHHH----HHHHHH
Confidence 223456789999999997765322 2222111 122222222222222211111 111111 124678
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 606 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 606 lL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
+|.++|.+|..+|++++|+.+|++|+++..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998864
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.48 E-value=3.1e-12 Score=161.47 Aligned_cols=245 Identities=12% Similarity=0.030 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...++.+|..++..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-------- 139 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-------- 139 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 455777788888999999999999999876 5667788999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYINVA 487 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~--------------------------e~l~G~dhP~~a~al~NLA 487 (1349)
.|+...++..+|.+|...|++++|+..+++++... +.....+.+.....+..++
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 35566778888888999999999888887665421 0000000001112223456
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhH----HHHHHHHHHHHHHHhcCCCCHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDLRT 563 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydE----Aie~lekALeI~kk~LG~dhp~T 563 (1349)
.++...|++++|+..|+++++.. +....++++||.+|..+|++++ |+.+|++++++ .+++...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a 286 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRI 286 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHH
Confidence 67777777888877777777642 3345677889999999999986 78888888865 3555543
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 564 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 564 ~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+..++.+....++..+++....... ...+....++..++.+|...|++++|+..|+++++..+.
T Consensus 287 ---~~~lg~~l~~~g~~~eA~~~l~~al------~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 287 ---VTLYADALIRTGQNEKAIPLLQQSL------ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3444444333333333332211111 112344567888999999999999999999999987543
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.47 E-value=6.9e-12 Score=158.24 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 425 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI------- 425 (1349)
....++..|..++.+|++++|+..+.+++.+ +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4566888899999999999999999999965 5667789999999999999999999999998753
Q ss_pred --------------------HHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000695 426 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 485 (1349)
Q Consensus 426 --------------------~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~N 485 (1349)
+......+.+....++..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112244556677888999999999999999999988864 2344567788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000695 486 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 564 (1349)
Q Consensus 486 LA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ 564 (1349)
+|.++...|++++|+.+++++++.. + ....++..+|.++...|++++|+..|++++.+ .++++...
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~ 230 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD-----P---GNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNNPAVL 230 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH
Confidence 8889999999999999998887753 2 23456777888888888888888888888754 45554443
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6e-12 Score=146.47 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=167.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 439 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ 439 (1349)
.|..|...++.++|+.+|++||.+ +|....++..+|.-|.++.+...|+..|++|+++. |..-+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyR 399 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYR 399 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHH
Confidence 367777888999999999999987 78889999999999999999999999999999984 55678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp 519 (1349)
+++.||..|..++...=|+-||++|+.+ -|.....+..||.||..+++.++|+.+|.+|+....
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------- 463 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------- 463 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------
Confidence 9999999999999999999999999985 245567788899999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 584 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl 584 (1349)
....++..||.+|..++++.+|.++|++.++.. ..-|...+.+..+..||+....+.....+|.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 135778899999999999999999999999977 5568888999999999997776666555544
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.45 E-value=4.5e-12 Score=169.31 Aligned_cols=245 Identities=13% Similarity=0.062 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
..+..+|..+...|++++|+.+|++++.+ +|....++..||.+|..+|++++|+..+++++.. +
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~ 525 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------K 525 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 34667889999999999999999999976 4556678999999999999999999999999875 3
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------H------------HHhcCCCChhHHH
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------------L------------HLTCGPSHPNTAA 481 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALel---------------------~------------e~l~G~dhP~~a~ 481 (1349)
|.....++.+|.++...+++++|+.+++++... . ..++. .+|....
T Consensus 526 P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~ 604 (1157)
T PRK11447 526 PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTR 604 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCch
Confidence 445566777788888888888888877653110 0 00000 2344456
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 561 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp 561 (1349)
.+..+|.+|..+|++++|+.+|+++++.. + ....++.++|.+|..+|++++|+.+++++++. .++++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P---~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p~~~ 671 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-----P---GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----ANDSL 671 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCCh
Confidence 77889999999999999999999999864 3 34567889999999999999999999977653 45555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 000695 562 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 562 ~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALe 632 (1349)
.....+.++ +......+.+............. .......+.++..+|.++..+|++++|+.+|++|+.
T Consensus 672 ~~~~~la~~-~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 672 NTQRRVALA-WAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHH-HHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 544333332 22333344444333322211100 000112355677789999999999999999999986
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.45 E-value=1.3e-11 Score=164.81 Aligned_cols=257 Identities=14% Similarity=0.010 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-----------hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-----------TAGAYSLLAVVLYHTGDFNQATIYQQ 420 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~-----------~A~ay~~LA~ay~~lGdyeeAle~~q 420 (1349)
.+...++.+|.+++.+|++++|+.+|++++.+.. ++.. ....+..+|.++...|++++|+.+|+
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-----~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDP-----HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3466788899999999999999999999997632 2221 11233456889999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------hcCCCChh------------
Q 000695 421 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----------TCGPSHPN------------ 478 (1349)
Q Consensus 421 KALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~----------l~G~dhP~------------ 478 (1349)
+++.+ +|....++..||.+|..+|++++|+++|++++.+.-. ++....+.
T Consensus 376 ~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 376 QARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 99987 3556678999999999999999999999999975210 00000000
Q ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 479 ------------TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 479 ------------~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
....+..+|.++...|++++|+.+|++++++. ++ ...+++.+|.+|..+|++++|+..++
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~---~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PG---SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01234457788889999999999999999874 33 34578899999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc--------------------------------cCCCchh
Q 000695 547 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG--------------------------------TRKPDAS 594 (1349)
Q Consensus 547 kALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~--------------------------------a~a~d~~ 594 (1349)
+++.. .++++....++..+ .......+.+...... .......
T Consensus 520 ~al~~-----~P~~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 520 RLAQQ-----KPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHc-----CCCCHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 98864 35555433322211 0000111111000000 0000000
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 595 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 595 ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
.....++.-..++..+|.+|..+|++++|+.+|++++++.+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 00011233345677888999999999999999999988754
No 23
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=4.6e-12 Score=137.63 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+...+.+|.-|+.+|++..|...+++||+. +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 344677889999999999999999999999976 7888899999999999999999999999999997
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+|....+++|.|.+++.+|+|++|..+|++|+. .+..+....++.|+|.|..++|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 577889999999999999999999999999997 34556678899999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
+........++..+...|+|..|..++++-.
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3344556778999999999999998876544
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.42 E-value=2.9e-11 Score=152.62 Aligned_cols=243 Identities=20% Similarity=0.195 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..+|..+...|++++|+.+|.+++.. .+....++..+|.++...|++++|+.+|++++..
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 528 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-------- 528 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 345566677777777777777777777654 2334455666666666666776666666666553
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------------HhcCCCChhHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH---------------------------LTCGPSHPNTAATYINV 486 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e---------------------------~l~G~dhP~~a~al~NL 486 (1349)
+|....++..++.++...|++++|+.++++++.... ... ..++....++..+
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l 607 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-DAAPDSPEAWLML 607 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 122233444444444444444444444444432100 000 0123334566677
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000695 487 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 566 (1349)
Q Consensus 487 A~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ea 566 (1349)
|.+|...|++++|+.+|+++++.. ++ ....+..+|.+|...|++++|+.++++++.+ .+++......
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 674 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-----PD---SALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIG 674 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 777777777777777777776542 22 2345666777777777777777777777654 3444333222
Q ss_pred HHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 567 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 567 l~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
+..+ +...+..+.+..+..... ..++.....+..+|.++...|++++|+.+|++++.+..
T Consensus 675 l~~~-~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 675 LAQL-LLAAKRTESAKKIAKSLQ--------KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHH--------hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 2221 112222222222221111 11223345677888889899999999999999888654
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=7.2e-11 Score=138.25 Aligned_cols=245 Identities=15% Similarity=0.076 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+..|+..|..++..|++..|...|.+++.+ ++.....|-.+|.+|....+-.+...+|.+|..+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 34778888999999999999999999999977 3444445889999999999999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
+|.....|+..|.+++-+++|++|+.-|++++.+ .|..+..+..++.+++++++++++...|+++.+.+
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 4666778999999999999999999999999986 47778899999999999999999999999998765
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 000695 512 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK 590 (1349)
Q Consensus 512 kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~d-hp~T~eal~~La~L~qk~~eqAEAl~~~a~a 590 (1349)
|....+|...|.++..+++|+.|+++|.+|+++-....+-. .+....-...|..-..+...++..+...+..
T Consensus 459 -------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 45567888899999999999999999999998754321110 1111111111111112333333333333333
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 591 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 591 ~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.+ +.-..++..||.+..++|+.++|+++|++++.+-++
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 33 234467889999999999999999999999998664
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=1.6e-11 Score=159.89 Aligned_cols=234 Identities=16% Similarity=0.029 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++.+|.++.. +++.+|+..|.+++... |.. .....+|.++...|++++|+.+|++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 56678888988887 89999999999998662 222 23666788888999999999999997543 1
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
+ ....+.++|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|+.+|++|+++.
T Consensus 540 --p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 --M-SNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --C-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 1 1234678899999999999999999999874 24444556667777778899999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 592 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d 592 (1349)
|. ...+.++|.++..+|++++|+.+|++++.+ .|+++. +...++.+....++..+++......
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~---a~~nLG~aL~~~G~~eeAi~~l~~A-- 669 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSN---YQAALGYALWDSGDIAQSREMLERA-- 669 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 22 567899999999999999999999999976 577764 4455554444444444444322211
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 593 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 593 ~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
....+...+++.++|.++..+|++++|+.+|++|+++...
T Consensus 670 ----L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 670 ----HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred ----HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1123455678999999999999999999999999998864
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.2e-12 Score=152.56 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=172.0
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE----------------- 427 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~E----------------- 427 (1349)
..+-+..+|+.+|.+ +...+..+..++..+|.+|+++++|++|..+|+.+-++.-
T Consensus 330 ~s~y~~~~A~~~~~k--------lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 330 LSQYNCREALNLFEK--------LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHHHHHh--------hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 334444556655555 2234677788999999999999999999999988744311
Q ss_pred ---------HhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000695 428 ---------RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 498 (1349)
Q Consensus 428 ---------rilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdyde 498 (1349)
+.+-..+++...+|..+|.||.-+++++.|+++|+||+.+ +|..+.+|..+|.=+..+..||.
T Consensus 402 ~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHh
Confidence 1111234556678899999999999999999999999985 57778889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 000695 499 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 578 (1349)
Q Consensus 499 Ale~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~ 578 (1349)
|..+|+.||.+. +....+||-||.+|.++++++.|.-+|++|++| .|.....+..++.++.+..
T Consensus 474 a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 474 AMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred HHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhh
Confidence 999999999875 445688999999999999999999999999987 3444445555555544444
Q ss_pred HHHHHHH--hccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 579 EQQEAAR--NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 579 eqAEAl~--~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
...+|+. ..+...++. -.-..+..+.++...++|++|+..+++..++-.
T Consensus 538 ~~d~AL~~~~~A~~ld~k--------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPK--------NPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred hhhHHHHHHHHHHhcCCC--------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 4444443 333333311 112346678888999999999999998776643
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=5.3e-11 Score=147.66 Aligned_cols=235 Identities=13% Similarity=0.040 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc---------CCHHHHHHHH
Q 000695 352 ADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQ 419 (1349)
Q Consensus 352 s~A~~LlelG~~yl~q---GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l---------GdyeeAle~~ 419 (1349)
-++..++..|..++.. +.+++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3555666677655544 3567899999999865 667788889999887643 3488999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000695 420 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 499 (1349)
Q Consensus 420 qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeA 499 (1349)
++|+++ +|+...++..+|.++...|++++|+.+|++|+.+ .|....+++++|.+|...|++++|
T Consensus 328 ~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 328 IKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999987 4667788999999999999999999999999986 355667889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH-
Q 000695 500 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF- 578 (1349)
Q Consensus 500 le~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~- 578 (1349)
+.+|++|+++. +.++ ..++.++.++..+|++++|+.++++++... .++++. ....++.+....+
T Consensus 392 i~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~~~---~~~~la~~l~~~G~ 456 (553)
T PRK12370 392 LQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDNPI---LLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccCHH---HHHHHHHHHHhCCC
Confidence 99999999874 3333 334445666778999999999998877442 344443 3344444433333
Q ss_pred -HHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 579 -EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 579 -eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
+.|.+...... ...+.-...+..++..|...|+ +|...+++.++...
T Consensus 457 ~~eA~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 457 HELARKLTKEIS--------TQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHHHhh--------hccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 34433332211 1112334456777778877774 77777777655443
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=7.4e-11 Score=146.41 Aligned_cols=218 Identities=12% Similarity=0.019 Sum_probs=152.7
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000695 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 446 (1349)
Q Consensus 367 qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ 446 (1349)
.+++++|+.++++|+++ +|....++..+|.++..+|++++|+.+|++|+++ .|+...+++++|.
T Consensus 317 ~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~ 380 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGW 380 (553)
T ss_pred chHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 35589999999999876 5677789999999999999999999999999987 4667788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000695 447 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 526 (1349)
Q Consensus 447 ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~ 526 (1349)
+|..+|++++|+.+|++++.+ .|.....+..++.++...|++++|+.++++++... .+.....+.
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~ 445 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKL--------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLS 445 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHH
Confidence 999999999999999999986 23333344456667778999999999999987653 122345678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHH
Q 000695 527 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDL 606 (1349)
Q Consensus 527 nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svael 606 (1349)
++|.+|..+|++++|..++++.... .+....+...|+..+....+.+.+......... ..... -
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~--~~~~~------~ 509 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSERALPTIREFLESE--QRIDN------N 509 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHh--hHhhc------C
Confidence 8999999999999999998765432 222233344444333333333333211110000 00110 1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 000695 607 LDYINPSHDTKGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 607 L~~Lg~iy~aqGdyEEAle~yekALe 632 (1349)
...+..+|.-.|+-+.|... +++.+
T Consensus 510 ~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 510 PGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred chHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 22366677777887777665 44443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.34 E-value=7.6e-11 Score=153.74 Aligned_cols=232 Identities=15% Similarity=-0.001 Sum_probs=178.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 436 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpd 436 (1349)
.+.+|..+...|++++|+.+|++++.. . +. ...+..+|.++...|++++|+.+|++++.+ +|.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~--p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~ 574 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH------D--MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLG 574 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc------C--CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCc
Confidence 556677788999999999999987533 1 11 234678899999999999999999999875 244
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
....+..++..+...|++++|+.+|++++.+ .|. ...+.++|.++..+|++++|+.+|++++.+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4566667777777889999999999999975 344 6789999999999999999999999999874
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH--HHHHHhccCCCchh
Q 000695 517 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ--QEAARNGTRKPDAS 594 (1349)
Q Consensus 517 dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq--AEAl~~~a~a~d~~ 594 (1349)
|....++.++|.++..+|++++|+.+|++++++ .|+++... ..|+.+....++. +..........+
T Consensus 640 --Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~---~nLA~al~~lGd~~eA~~~l~~Al~l~-- 707 (987)
T PRK09782 640 --PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALI---RQLAYVNQRLDDMAATQHYARLVIDDI-- 707 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 344578899999999999999999999999976 47776544 4444444444433 333333222222
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 595 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 595 ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
+..+.+...+|.+..++.+++.|.+.|.++..+...+-
T Consensus 708 ------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 708 ------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 34566777888888888899999999988888766533
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.3e-10 Score=122.76 Aligned_cols=206 Identities=20% Similarity=0.146 Sum_probs=154.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
....+..+..+|.+|...|++++|+.++++++.. +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 4456788999999999999999999999999875 3556788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
++....++.++|.+|..+|++++|+.+|++++... ..+.....+.++|.+|...|++++|..++.+++..
T Consensus 95 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 ----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred ----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23345678899999999999999999999998742 12334567888999999999999999999999876
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 000695 552 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 631 (1349)
Q Consensus 552 ~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekAL 631 (1349)
.+++... ...++.+.....+..++.......... .+.....+..++.++...|+.++|..+.+.+.
T Consensus 165 -----~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 -----DPQRPES---LLELAELYYLRGQYKDARAYLERYQQT------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -----CcCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444433 333433333333333332211111110 11234566788899999999999999888776
Q ss_pred HH
Q 000695 632 KV 633 (1349)
Q Consensus 632 eL 633 (1349)
.+
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 55
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=4e-10 Score=146.60 Aligned_cols=275 Identities=12% Similarity=-0.023 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+.....++..++..|++++|..++++++..... ........++..+|.++...|++++|..++++++.+.+.. |..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~ 527 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVY 527 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cch
Confidence 344445678889999999999999999875221 1222245677889999999999999999999999987753 332
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
.....++.++|.+++.+|++++|+.++++++.+.....+..++....++..+|.++..+|++++|..++++++.+....
T Consensus 528 -~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 528 -HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 2345678899999999999999999999999998876554555555667789999999999999999999999987643
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH---------------------------
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA--------------------------- 566 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ea--------------------------- 566 (1349)
+ ....+.++..+|.++...|++++|..++.++..++... + .+......
T Consensus 607 -~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 607 -Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred -C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 2 22345677789999999999999999999998875442 1 11100000
Q ss_pred ------------HHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHh
Q 000695 567 ------------AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 567 ------------l~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~ 634 (1349)
...++.+....++..++......................++..+|.+|..+|++++|..++++|+++.
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 00111111111111111111111111111112223456678888999999999999999999999988
Q ss_pred cccc
Q 000695 635 GNFY 638 (1349)
Q Consensus 635 ~kl~ 638 (1349)
...+
T Consensus 762 ~~~g 765 (903)
T PRK04841 762 NRTG 765 (903)
T ss_pred Cccc
Confidence 6543
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=1.4e-10 Score=127.22 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+..++.+|..++..|++++|+..|++++... +.++....++..+|.+|+.+|++++|+..|++++...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----- 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----
Confidence 346788999999999999999999999998763 4556667789999999999999999999999999863
Q ss_pred CCCchhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------HHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTAA--------------TYINVAMM 489 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~l--------GdyeeALe~yerALel~e~l~G~dhP~~a~--------------al~NLA~i 489 (1349)
++++....+++.+|.++... |++++|++.|++++... +++..... ....+|.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667889999999886 88999999999998752 22322221 22468999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 490 y~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
|..+|++.+|+..|+++++.+ ++++....+++.+|.+|..+|++++|..+++...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999875 4456678899999999999999999999876544
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=1.6e-10 Score=125.93 Aligned_cols=209 Identities=19% Similarity=0.150 Sum_probs=162.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
+...+.++..||.-|+..|++..|...+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 3456778899999999999999999999999997 6778899999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+|....+++|.|..++.+|++++|..+|++|+.. +.....+.++.|+|.|..++|+++.|..+|++++++
T Consensus 99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 6778899999999999999999999999999874 555667889999999999999999999999999977
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 000695 552 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 631 (1349)
Q Consensus 552 ~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekAL 631 (1349)
.++.+.....+..+.+ +.++...|...... ....-...++.|.....+....|+-+.|..|=.+-.
T Consensus 169 -----dp~~~~~~l~~a~~~~---~~~~y~~Ar~~~~~------~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 169 -----DPQFPPALLELARLHY---KAGDYAPARLYLER------YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred -----CcCCChHHHHHHHHHH---hcccchHHHHHHHH------HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555544444444332 22333332221100 000011334556666777788999998888776666
Q ss_pred HHhcc
Q 000695 632 KVKGN 636 (1349)
Q Consensus 632 eL~~k 636 (1349)
+.++.
T Consensus 235 r~fP~ 239 (250)
T COG3063 235 RLFPY 239 (250)
T ss_pred HhCCC
Confidence 66654
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=8.2e-10 Score=126.87 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+..++.+|..|...|++++|+..|.+++.+ +|....+|+.+|.+|..+|++++|+..|++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 45778999999999999999999999999976 5677889999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
.|+...++.++|.+++..|++++|++.|++++.+ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4667788999999999999999999999999975 2334321 111 1233456778888888866543210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 512 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 512 ----------kllG~d-------------------hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
-.+|.. .+....+|++||.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999965
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=8e-11 Score=137.87 Aligned_cols=258 Identities=15% Similarity=0.082 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+..+-..|..++..|+|++|+.||.+|+++. |.-...|.+++.||..+|+|++.++.+.+||++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl----- 178 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL----- 178 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence 4457788999999999999999999999999873 233668999999999999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHH------------------HHHHHHH--------------------------
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALK------------------YVKRALY-------------------------- 466 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe------------------~yerALe-------------------------- 466 (1349)
.|+...+++..|.++..+|++++|+. +.+|.|.
T Consensus 179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 179 ---NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ---CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 46667777777777777777766661 0111111
Q ss_pred ---------------------------------------------HHH-------HhcCCC-----ChhHHHHHHHHHHH
Q 000695 467 ---------------------------------------------LLH-------LTCGPS-----HPNTAATYINVAMM 489 (1349)
Q Consensus 467 ---------------------------------------------l~e-------~l~G~d-----hP~~a~al~NLA~i 489 (1349)
.+. .....+ -...+.++...|..
T Consensus 256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 000 000000 00112333333444
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhc-----------C---------------CCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLL-----------G---------------PDHIQTAASYHAIAIALSLMEAYPLSVQ 543 (1349)
Q Consensus 490 y~~lGdydeAle~LekALei~ekll-----------G---------------~dhp~tA~a~~nLA~ay~~lGdydEAie 543 (1349)
+.-.|++-.|...|.+++.+..... . .-++....+|+..|++++-+++|++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4444554444444444443311100 0 0013345678889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHH
Q 000695 544 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST 623 (1349)
Q Consensus 544 ~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEA 623 (1349)
-|++|+.+ .+++ +.+...|+++.-+....++.+.... ...+.-+...+.+.+.|.++..+++|++|
T Consensus 416 DF~Kai~L-----~pe~---~~~~iQl~~a~Yr~~k~~~~m~~Fe------e~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 416 DFQKAISL-----DPEN---AYAYIQLCCALYRQHKIAESMKTFE------EAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHhhc-----Chhh---hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 99999866 3333 3444444443333333333332211 11122335567899999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 000695 624 LKRKTYVAKVKGNFY 638 (1349)
Q Consensus 624 le~yekALeL~~kl~ 638 (1349)
.++|.+|++|-.+..
T Consensus 482 ~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 482 VKQYDKAIELEPREH 496 (606)
T ss_pred HHHHHHHHhhccccc
Confidence 999999999987733
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-10 Score=136.29 Aligned_cols=240 Identities=13% Similarity=0.148 Sum_probs=177.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH---------------------------HHhhCCCChhhHHHHHHHHHHHHhcCCHH
Q 000695 361 SKTALDKGKLEDAVTYGTKALAKL---------------------------VAVCGPYHRMTAGAYSLLAVVLYHTGDFN 413 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~eeALel~---------------------------eqvlG~dhp~~A~ay~~LA~ay~~lGdye 413 (1349)
|.+++.+.++++|+..|++.+... +.++ ..+.....++..+|..|...++.+
T Consensus 269 A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 269 AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHH
Confidence 555667777888887777665420 0000 011222234455788888889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000695 414 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 493 (1349)
Q Consensus 414 eAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l 493 (1349)
+|+.||++||.+ +|....++..+|.-|..+.+...|++.|++|+++ .|..-.+++.||.+|.-+
T Consensus 348 KAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 348 KAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHh
Confidence 999999999998 5778899999999999999999999999999997 355678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 494 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 494 GdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
+-..-|+-||++|+++. |.....|..||.+|..+++.++|+.+|++|+.. |.. -..++..|+.+
T Consensus 412 ~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~LakL 475 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAKL 475 (559)
T ss_pred cchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHHH
Confidence 99999999999999875 334567888999999999999999999999854 332 23556677777
Q ss_pred HHHhHHHHHHHHhccCCCchh-hhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 000695 574 ESKAFEQQEAARNGTRKPDAS-IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 574 ~qk~~eqAEAl~~~a~a~d~~-ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL 633 (1349)
..+..+..+|........... ..+.-......+..+|+.-+.+.++|++|-.|..+++..
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 666665555544322222211 111222345667788999999999999999987666543
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5e-10 Score=139.57 Aligned_cols=289 Identities=14% Similarity=0.123 Sum_probs=198.5
Q ss_pred HHHHHhhHHhhccccCCCCCC----------chHHHHHhhhhhhhh----hcCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 000695 311 LCHKVGIELVSRDFDMDSPSP----------FRKIDVVSLVPVHKQ----AACSSADGRQLLESSKTALDKGKLEDAVTY 376 (1349)
Q Consensus 311 Lc~KlGIqL~aRdY~fdsa~~----------F~~eDIl~LvPvvK~----s~~sss~A~~LlelG~~yl~qGdyeEAlel 376 (1349)
-.++.|+++..+.|......| |...|...+..+.-+ +......++.+|.+|+.|..+|+|++|..|
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 455677888778776665533 233333222222222 233445677899999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC----
Q 000695 377 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---- 452 (1349)
Q Consensus 377 ~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lG---- 452 (1349)
|.+++... .......+..||.+|.+.|+++.|..+|.+.+... |+...++..||.+|...+
T Consensus 330 Y~~s~k~~-------~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 330 YMESLKAD-------NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHccC-------CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhH
Confidence 99988652 12245678889999999999999999999988763 555666777888887775
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000695 453 HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 532 (1349)
Q Consensus 453 dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay 532 (1349)
..+.|..++.+++.. .|....+|..||.+|... +...++.+|..|+.+.....+. .-...+.++|..+
T Consensus 395 ~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLH 462 (1018)
T ss_pred HHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHH
Confidence 456777777777664 256678999999998765 4455599999999988776443 3357799999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHhH--HHHHHHHhccCCCchhhhhcCCCcHHHHHH
Q 000695 533 SLMEAYPLSVQHEQTTLQILRAKLGPDDL--RTQDAAAWLEYFESKAF--EQQEAARNGTRKPDASIASKGHLSVSDLLD 608 (1349)
Q Consensus 533 ~~lGdydEAie~lekALeI~kk~LG~dhp--~T~eal~~La~L~qk~~--eqAEAl~~~a~a~d~~ia~k~h~svaelL~ 608 (1349)
+.+|++.+|..++.+|+..+......+.. ..+....+|+.+..... +.++.++.. ..+.|+.+.+.+.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~--------Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS--------ILKEHPGYIDAYL 534 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH--------HHHHCchhHHHHH
Confidence 99999999999999999986644433321 11223445555444332 222222211 1234666777777
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHh
Q 000695 609 YINPSHDTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 609 ~Lg~iy~aqGdyEEAle~yekALeL~ 634 (1349)
-+|-....+++..+|...+..++.+.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 77766677788888888888877763
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.7e-10 Score=131.41 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=152.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 000695 369 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 448 (1349)
Q Consensus 369 dyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly 448 (1349)
++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|+.||.- +.....+++|+|..+
T Consensus 471 ~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~ 534 (840)
T KOG2003|consen 471 DFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTA 534 (840)
T ss_pred chhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccH
Confidence 466666676666644 3455667777788888888888888888888752 344567788888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000695 449 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 528 (1349)
Q Consensus 449 ~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nL 528 (1349)
..+|++++|+++|.+.-.++.. .+.++..+|.+|..+.+..+|+++|-++..+. ++.| .++..|
T Consensus 535 e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl 598 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKL 598 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHH
Confidence 8888888888888877666532 36677888888888888888888888876654 3443 456778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHH
Q 000695 529 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLD 608 (1349)
Q Consensus 529 A~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~ 608 (1349)
|.+|-+.|+-.+|.+++-..++.| |-..+...||+.++....-..+++..... +.-..+.+.....
T Consensus 599 ~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~ek------aaliqp~~~kwql 664 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEK------AALIQPNQSKWQL 664 (840)
T ss_pred HHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHH------HHhcCccHHHHHH
Confidence 888888888888888877777654 23345667776443322222222222111 1112235566777
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 609 YINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 609 ~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
.++.++++.|+|.+|+..|+...+-++
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 899999999999999999987665544
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=5.3e-10 Score=129.08 Aligned_cols=237 Identities=15% Similarity=0.145 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG--dyeeAle~~qKALeI~ErilG 431 (1349)
...-+..+..++.+|+++.|++.+. .++. .++.....+.++|..+++.+| ++..|..|...|+.+
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------ 485 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------ 485 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------
Confidence 3444566788899999999988653 3332 344455566788888888754 789999999999876
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
+...+.++.|-|.+-+..|++++|.+.|++||. ++.....+++|+|..+..+|++++|+++|-+.-.+.
T Consensus 486 --dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il- 554 (840)
T KOG2003|consen 486 --DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL- 554 (840)
T ss_pred --cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-
Confidence 234567888999999999999999999999986 345567899999999999999999999999988876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC
Q 000695 512 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 591 (1349)
Q Consensus 512 kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~ 591 (1349)
...+.+++.+|.+|..+.+..+|++++.++..+ =+++|..+ ..|+.++.+.++..++..+.....
T Consensus 555 -------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~il---skl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 555 -------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAIL---SKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred -------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH---HHHHHHhhcccchhhhhhhhhhcc
Confidence 346889999999999999999999999988765 37888654 455666666666666654432221
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 592 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 592 d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
. .-+.-.+....|+..|....=.++|+.||++|.-+.+
T Consensus 620 r------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 620 R------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred c------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 1 1234456778888888888888899999999876533
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=130.48 Aligned_cols=237 Identities=17% Similarity=0.115 Sum_probs=190.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
.++|++|+..|.+.+|...++.+|+.. .+ ...+..|+.+|....+...|+..+.+.++. .|..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~------~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF------PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC------Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence 457999999999999999999998763 23 447889999999999999999999998875 3666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
...+..+|.++..++++++|+++|+.+++. |+....+...+|.-|.--++.+-|+.||++.|.+ |..
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~ 356 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQ 356 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCC
Confidence 777889999999999999999999999984 5666677777888999999999999999999986 344
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 597 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~ 597 (1349)
+ ...+.|||.++...++++-++..+++|+... .+.....+.+.+|+.+.-..++.-.|.+..... .
T Consensus 357 s---peLf~NigLCC~yaqQ~D~~L~sf~RAlsta-----t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla------L 422 (478)
T KOG1129|consen 357 S---PELFCNIGLCCLYAQQIDLVLPSFQRALSTA-----TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA------L 422 (478)
T ss_pred C---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhc-----cCcchhhhhhhccceeEEeccchHHHHHHHHHH------h
Confidence 4 4668899999999999999999999999775 334455677777776544444443333332211 1
Q ss_pred cCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 598 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 598 k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.....-.+++++||.+..+.|+.++|..+|..|..+.+..+
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 12335678899999999999999999999999998877655
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.5e-10 Score=134.71 Aligned_cols=253 Identities=14% Similarity=0.090 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--------------------------HhhCCCChhhHHHHHHHHHHH
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLV--------------------------AVCGPYHRMTAGAYSLLAVVL 406 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~e--------------------------qvlG~dhp~~A~ay~~LA~ay 406 (1349)
+.+.+...+..++..++|.+...++...++... ..+-..+|..+..|+.+|..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 356677888888899999988888877765410 001124667777888999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000695 407 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 486 (1349)
Q Consensus 407 ~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NL 486 (1349)
+..|++.+|.+||-||..+ ++..+.+|..+|..|...|+.++|+.+|..|-+++... .-| +.-+
T Consensus 323 l~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---hlP-----~LYl 386 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---HLP-----SLYL 386 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---cch-----HHHH
Confidence 9999999999999999877 45677889999999999999999999999998876432 222 3448
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000695 487 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 566 (1349)
Q Consensus 487 A~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ea 566 (1349)
|+-|...+++..|.++|.+|+.++ +. ...+++.+|.+....+.|.+|..+|+.++...+..+. ..+...-.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~-----P~---Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~ 457 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIA-----PS---DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPT 457 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-----CC---cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHH
Confidence 999999999999999999999987 33 3466888999999999999999999999966655543 33344455
Q ss_pred HHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 567 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 567 l~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
..+|+..+.+.....+|+.....++. ..+.-...+..+|.+|..+|+++.|+.+|.+||.+.+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALL------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHH------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 67788777777777776654333222 11234567899999999999999999999999998764
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.19 E-value=2.2e-09 Score=117.83 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=138.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
....+..+..+|..++..|++++|+..+++++... ++++....+++.+|.+|..+|++++|+..|++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 45667899999999999999999999999998763 4556667889999999999999999999999999853
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 529 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~l--------GdydeAle~LekALei~ekllG~dhp~tA~a~--------------~nLA 529 (1349)
++++....+++.+|.++... |++++|+..|+++++.. +++.....++ ..+|
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667889999999876 78999999999998764 3333322222 2455
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHH
Q 000695 530 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 609 (1349)
Q Consensus 530 ~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~ 609 (1349)
.+|..+|++.+|+..++++++.+ ++ .+...+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~----------------------------------------~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PD----------------------------------------TPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CC----------------------------------------CcchHHHHHH
Confidence 55555666666665555554332 11 1245567889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHH
Q 000695 610 INPSHDTKGRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 610 Lg~iy~aqGdyEEAle~yekALeL 633 (1349)
++.+|...|++++|..+++....-
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988776543
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=4.3e-09 Score=135.52 Aligned_cols=249 Identities=14% Similarity=0.012 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
.+..+..+|..+...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------- 112 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG------- 112 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3555777899999999999999999999976 4555667889999999999999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-------
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK------- 505 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek------- 505 (1349)
.|+... +..+|.++...|++++|+..|++++.+ +|....++..+|.++...++.++|+..+++
T Consensus 113 -~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 113 -APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred -CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 355556 889999999999999999999999985 355566677788888888888877766652
Q ss_pred --------------------------------HHHHHHHhcC------CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000695 506 --------------------------------ALKCNQRLLG------PDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 547 (1349)
Q Consensus 506 --------------------------------ALei~ekllG------~dhp~tA~a~~nLA~ay~~lGdydEAie~lek 547 (1349)
|++.++.+.. ...+....++.....++...|++++|+..|++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222222221 01122223333212234577899999999888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHH
Q 000695 548 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 627 (1349)
Q Consensus 548 ALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~y 627 (1349)
+++. ++..|..........++..+..+.+...........+.. .......+..|+.++..+|++++|+.++
T Consensus 263 ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~----~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 263 LKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI----ADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred hhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC----CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6643 322333322222334555555555555443322211100 0011244566677788899999999999
Q ss_pred HHHHHHhc
Q 000695 628 TYVAKVKG 635 (1349)
Q Consensus 628 ekALeL~~ 635 (1349)
++++...+
T Consensus 334 ~~~~~~~P 341 (765)
T PRK10049 334 AHTINNSP 341 (765)
T ss_pred HHHhhcCC
Confidence 99888754
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.18 E-value=5.7e-09 Score=134.38 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=129.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 359 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 359 elG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
....++...|++++|+..|.++... .+..+.++..+|.++...|++.+|+.+|++++.+ .|...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~ 83 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQND 83 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 3346678899999999998888753 4566778999999999999999999999999987 35556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
.++..+|.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++. ++
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~- 148 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ- 148 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-
Confidence 67889999999999999999999999985 355556 8889999999999999999999999975 33
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
...++..+|.++...+..++|+..++
T Consensus 149 --~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 149 --TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred --CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34555667888888888887776655
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=6.5e-10 Score=133.03 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=151.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
|..|..+++.|++.+|.-+|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56788899999999999999999854 7899999999999999999999999999999987 6788
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhcCC----------C------------------Ch--hHHHH
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLL-----HLTCGP----------S------------------HP--NTAAT 482 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~-----e~l~G~----------d------------------hP--~~a~a 482 (1349)
..++..||..|...|.-.+|+.++.+=+... ...-+. . ++ ....+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 8999999999999999999999988776521 000000 0 01 11233
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 000695 483 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 483 l~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~ 562 (1349)
+..||.+|...|+|++|+.+|+.||... |.....|..||-.+..-.+..+|+..|++|+++.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---------- 494 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---------- 494 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----------
Confidence 4445555555555555555555555432 3344455555555555555555555555555431
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 563 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 563 T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
+.+..+.++||..|..+|.|++|..||-.||.+.++..
T Consensus 495 --------------------------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 495 --------------------------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred --------------------------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 23344578899999999999999999999999999866
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=1.1e-08 Score=133.24 Aligned_cols=274 Identities=13% Similarity=-0.027 Sum_probs=186.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dh-p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
....+..++..|++++|..++.++...........+ .....+...+|.++...|++++|..++++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 345567778899999999999988766432210111 22455667789999999999999999999987521 11222
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
....++..+|.++...|++++|+.++++++...... |..+ ....++.++|.++..+|++++|..++++++++.....+
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 245677889999999999999999999999987764 3222 34567889999999999999999999999999877654
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHH---------HHh
Q 000695 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA---------ARN 586 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEA---------l~~ 586 (1349)
...+....++..+|.++...|++++|..++++++.+..... . .....++..++.+....++..++ +..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~--~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-P--QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-c--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 44444556677899999999999999999999999876432 1 11222333333332222111111 100
Q ss_pred ccCC-Cc--h---------------------------hhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 587 GTRK-PD--A---------------------------SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 587 ~a~a-~d--~---------------------------~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.... .. . .............+..++.++..+|++++|..+|++++.+...
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0000 00 0 0000000011223467888999999999999999999998765
Q ss_pred cc
Q 000695 637 FY 638 (1349)
Q Consensus 637 l~ 638 (1349)
.+
T Consensus 724 ~g 725 (903)
T PRK04841 724 LR 725 (903)
T ss_pred hC
Confidence 44
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.13 E-value=6.3e-09 Score=130.04 Aligned_cols=253 Identities=15% Similarity=0.076 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..++..++..|+|..+..++.-++.... .....+..++++|++|+.+|+|++|..||.+|+... .+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d 339 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND 339 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC
Confidence 34566778899999999999999998887642 345678889999999999999999999999998752 22
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKC 509 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lG----dydeAle~LekALei 509 (1349)
+ ....+..||..|...|+++.|..+|++.+.. .|....++.-||.+|...+ ..+.|..++.++++.
T Consensus 340 ~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 340 N--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred C--ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 2 4667889999999999999999999999875 3556677788899998875 457777777777765
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 000695 510 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 589 (1349)
Q Consensus 510 ~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~ 589 (1349)
. +....+|..||++|....-+.. +.+|..|+.++....++--+......+.+ ++..+....|.-....++
T Consensus 410 ~--------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl-hf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL-HFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH-HHHhcChHHHHHHHHHHh
Confidence 4 5567889999999876665555 99999999999887766444443333333 222233333322222221
Q ss_pred CCchhhhhcC--CCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 590 KPDASIASKG--HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 590 a~d~~ia~k~--h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.........+ ......+.+++|.++...++++.|.+.|...++.++.
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 1100001110 1122456899999999999999999999999987554
No 49
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.13 E-value=2e-09 Score=122.88 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
...+..|...|.+|...+++++|...|.+|..+..+. .+....+..|.+.|.+|... ++++|+.+|++|+.++....
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 3456677888899999999999999999999998872 33456788888888888776 99999999999999997753
Q ss_pred CCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~l-GdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.....+.++.++|.+|... |++++|+++|++|+++++.. ........++..+|.++..+|+|++|+..|++....
T Consensus 109 --~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 109 --RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp ---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455688999999999999 99999999999999999764 244556788899999999999999999999988764
Q ss_pred H
Q 000695 552 L 552 (1349)
Q Consensus 552 ~ 552 (1349)
+
T Consensus 185 ~ 185 (282)
T PF14938_consen 185 C 185 (282)
T ss_dssp C
T ss_pred h
Confidence 3
No 50
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=5.6e-09 Score=120.97 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
....+..+..++..|++++|+.++++++.. +|....++.. +..+..+|++..+...+.+++.. ....
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~ 109 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPE 109 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcC
Confidence 334555677888899999999999988865 2333344443 56666666666666555555543 3455
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
++.....+..+|.++..+|++++|+..+++++.+ .|....++..+|.+|...|++++|+.++++++.....
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~- 180 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC- 180 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-
Confidence 6777778888888888888888888888888875 2333566778888888888888888888888876421
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
........+..+|.++..+|++++|+.+|++++
T Consensus 181 ---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 ---SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred ---CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234556778888888888888888888774
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-09 Score=130.37 Aligned_cols=141 Identities=22% Similarity=0.284 Sum_probs=112.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 480 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a 480 (1349)
.||.-|..++.+..|..+|.+|+.++ |.....+..+|.+.+..+.|.+|+.+|+.++...+.... ..+...
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~ 455 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWE 455 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchh
Confidence 35555666666666666666666652 444566788999999999999999999999977666543 334567
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCC
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 560 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dh 560 (1349)
.+++|||.+|.+++.+++|+.+|++||.+. +..+.++..+|.+|..+|+++.|+.+|.+|+.+ .+++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l-----~p~n 522 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL-----KPDN 522 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCcc
Confidence 789999999999999999999999999886 446788899999999999999999999999966 4665
Q ss_pred HHH
Q 000695 561 LRT 563 (1349)
Q Consensus 561 p~T 563 (1349)
..+
T Consensus 523 ~~~ 525 (611)
T KOG1173|consen 523 IFI 525 (611)
T ss_pred HHH
Confidence 443
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=1.2e-08 Score=116.49 Aligned_cols=273 Identities=14% Similarity=0.039 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++++++.+....++.+++.|..-.+.+-..--| ..-......||.++..++.|++++++|++|+.+.... .
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 3556777777777777888888888777655211101 1223566779999999999999999999999987653 3
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-Ch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d-hP-~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
|......++..||.+|..+.++++|+.+..+|+++.....-.+ |. ....+++.++..|..+|..-.|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999987754222 22 346678899999999999999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH-----HHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ-----QEAAR 585 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq-----AEAl~ 585 (1349)
... .+....+.++.-+|.+|...|+.+.|..-|++|+.+.... |..-. ..+++...+.......-+ .+++.
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmg-qv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMG-QVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHH-HHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 554 4567788999999999999999999999999999987654 22211 112222222111100000 11222
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHh
Q 000695 586 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 586 ~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~ 634 (1349)
...+.++..........+..+...++.+|+.+|..++=..++.+|-+.-
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 1111111111222233577888999999999999998888887776653
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.09 E-value=1.7e-10 Score=130.47 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
+.+|..++..|++++|+..+.+.+... ..+.....+..+|.++..+++++.|+..|++.+..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 355888999999999999997665432 123445678889999999999999999999998752 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
...+..++.+ ...+++++|+.+++++.+.. .++ ..+..+..++...++++++..+++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 4456667777 68899999999988876532 122 334456677889999999999998877421 1
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH-HHHHHhccCCCchhhh
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ-QEAARNGTRKPDASIA 596 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq-AEAl~~~a~a~d~~ia 596 (1349)
.+.....+..+|.++...|++++|+..|++|+++ .|+++.....+.|+.. ..+..+. .+++.......
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~----- 210 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAA----- 210 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-----
Confidence 2345677888999999999999999999999977 4788877766666532 1222222 11222111000
Q ss_pred hcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 597 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 597 ~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
...+ .++..+|.+|..+|++++|+.+|+++++..+.
T Consensus 211 -~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 211 -PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp -HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred -cCHH---HHHHHHHHHhcccccccccccccccccccccc
Confidence 1111 24677899999999999999999999887553
No 54
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=6e-09 Score=118.95 Aligned_cols=190 Identities=16% Similarity=0.064 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+..+...|..|...+++++|..+|.+|..+..+. .+....+.+|...+.+|... ++.+|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4556667788889999999999999999998874 45566788888888888777 9999999999999998763 33
Q ss_pred CchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~l-GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
....+.++.++|.+|... |++++|+++|++|+++++... .......++.++|.++..+|+|++|+..|+++......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 455688999999999999 999999999999999998743 33456778899999999999999999999998875422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.. ......-..+...+.+++.+||+..|...+++...+
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 21 112234455677888999999999988877766543
No 55
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.06 E-value=8.3e-10 Score=101.24 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
||.++.++.++|.+|..+|+|++|+.+|++|+++ .+.+|.+++.++.+++++|.+|..+|++++|++++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 67779899999999999999999999999999999999999864
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.06 E-value=5.9e-09 Score=118.84 Aligned_cols=271 Identities=13% Similarity=0.104 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
....+.|..++...++++|+..+.+.|....... .....|..+..+...+|.|.+++.+.---+..+... .|.
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds 79 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDS 79 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3445667778889999999999999998765442 345678889999999999999998877776665543 344
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 514 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekll 514 (1349)
.....+|.||+..+..+.++.+++.|.+-.+.+-..-.| ..-......+|.++..++.|++++++|+.|+++....
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~- 155 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN- 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc-
Confidence 557789999999999999999999988877764211111 1112455568999999999999999999999998654
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHhHHHHHHHHhccCCC
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ---DAAAWLEYFESKAFEQQEAARNGTRKP 591 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~---eal~~La~L~qk~~eqAEAl~~~a~a~ 591 (1349)
.|......++..||.+|..+.|+++|+-+..+|+++.... +-++.... .++..++......++.-.|......+.
T Consensus 156 -~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 156 -DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred -CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3333456788899999999999999999999999997654 33332222 222233322333333222222222222
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 592 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 592 d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.......+....+..+..+|.+|+.+|+.+.|...|++|+.+...++
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 22333444456678899999999999999999999999999998877
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=122.35 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
.+.++-++++|....+...|+..|.+.++. -|.....+..+|+++..++++++|+++|+.+++.
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-------- 319 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-------- 319 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------
Confidence 455667788888888888888888888755 4566667888899999999999999999988876
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
|+....+...+|.-|+.-++.+-|+.||++.|.+ |...| ..++|+|.|+...++++.++..|++|+....
T Consensus 320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-- 389 (478)
T KOG1129|consen 320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-- 389 (478)
T ss_pred CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc--
Confidence 5556667777888888889999999999998875 44444 5688999999999999999999999988763
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHH--HHHHHHh
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE--QQEAARN 586 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~e--qAEAl~~ 586 (1349)
+....+.+|+|||.+....||+..|.+.|+-|+. .++...+++.+|+.+..+.++ .++++.+
T Consensus 390 ---~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 390 ---QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred ---CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 2345678899999999999999999888887762 344445667777766555443 4444443
No 58
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.02 E-value=1.1e-09 Score=100.38 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
||+++.+|.++|.+|..+|+|++|+.+|++++.+ ....|.+|+.++.++.++|.+|..+|++++|+++|++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6789999999999999999999999999999999 66678889999999999999999999999999999999998753
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=5.9e-08 Score=110.01 Aligned_cols=241 Identities=13% Similarity=0.056 Sum_probs=185.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 439 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ 439 (1349)
.|.-++...+.++|+++|.+.++ .++.+..+...||.+|...|+.+.|+...+..+.- -+.....-..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 45556677889999999988875 37788999999999999999999999988766542 0111223456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp 519 (1349)
++..||.-|...|-++.|+..|....+.- ...-.++..|-.+|+...+|++|++..++...+..+ ....
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 78899999999999999999998877531 223457888999999999999999998887766422 2356
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcC
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 599 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~ 599 (1349)
.++..|..||..+....+++.|...+.+|++. ++....+...|+.+....++.+.+..... .+...+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e-----~v~eQn 244 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALE-----RVLEQN 244 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHH-----HHHHhC
Confidence 78999999999999999999999999999965 44445555666666666666666554322 123344
Q ss_pred CCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 600 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 600 h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+..+.+++..|-.+|..+|+.++.+.++.++.+.+..
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 4577889999999999999999999999998887653
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=5.1e-09 Score=125.55 Aligned_cols=187 Identities=17% Similarity=0.118 Sum_probs=158.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
+...+..++.+..+|.+....++-..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~ 383 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK 383 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 3456677888999999999999999999999999977 78888999999999999999999999888765532
Q ss_pred H-----H------hcC----------------------CCCc--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 427 E-----R------ELG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 427 E-----r------ilG----------------------~Dhp--dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
- . ..+ ..++ ....++..||.+|+..|+|++|+.+|+.||..
T Consensus 384 p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---- 459 (579)
T KOG1125|consen 384 PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---- 459 (579)
T ss_pred ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc----
Confidence 0 0 000 0011 23456788999999999999999999999973
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.|....+|+.||-.+..-.+..+|+..|++||++. |.+.+++||||..|..+|.|++|+.||..|+.+
T Consensus 460 ----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 460 ----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred ----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999986 678899999999999999999999999999999
Q ss_pred HHHhcC
Q 000695 552 LRAKLG 557 (1349)
Q Consensus 552 ~kk~LG 557 (1349)
.++..+
T Consensus 528 q~ks~~ 533 (579)
T KOG1125|consen 528 QRKSRN 533 (579)
T ss_pred hhcccc
Confidence 877443
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.01 E-value=8.4e-08 Score=119.68 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..++.++..|..++..|++++|+.++.+++.. .|....+|..||.+|..+|+.++|+..+..|-.+ .
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~ 203 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----N 203 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----C
Confidence 44678889999999999999999999999876 5777889999999999999999999988877654 2
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
|.....|..+|.....+|++.+|.-||.+|+.. .|.....+...+.+|.++|++..|...|.+++...-
T Consensus 204 ---p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 204 ---PKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred ---CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 333377888999999999999999999999985 355567788899999999999999999999988752
Q ss_pred HhcCCCc-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 512 RLLGPDH-IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 512 kllG~dh-p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
+.+ ..........+..+...++-+.|++.+..++...
T Consensus 273 ----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 273 ----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred ----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 111 2223334455777777777788888887777633
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=6.7e-08 Score=109.83 Aligned_cols=259 Identities=18% Similarity=0.066 Sum_probs=172.9
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000695 349 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 349 ~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er 428 (1349)
....++...+++|..++..|++.+|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 34566777788888888888888888888888754 6777778888888888888888888888877776
Q ss_pred hcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcC-C-------
Q 000695 429 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCG-P------- 474 (1349)
Q Consensus 429 ilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~--------------------------e~l~G-~------- 474 (1349)
.|+.+-+...-|.++..+|++++|+.-|...|..- ...+| .
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 46677777777888888888888877776665410 00010 0
Q ss_pred -------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000695 475 -------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 547 (1349)
Q Consensus 475 -------dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lek 547 (1349)
-.|..+..+...|.+|...|+...|+.-++.|-++. . +....++.++.+++..|+.+.++.-.++
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 123344555566677777777777777776665553 1 2346678889999999999999998888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH---------HHHHH-------hccCCCc-------------------
Q 000695 548 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ---------QEAAR-------NGTRKPD------------------- 592 (1349)
Q Consensus 548 ALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq---------AEAl~-------~~a~a~d------------------- 592 (1349)
|+. +.++|......+..|..+.+..... .+.+. .......
T Consensus 249 CLK-----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 249 CLK-----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHc-----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 885 4788876555555444332211111 11111 0000000
Q ss_pred ------hhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 593 ------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 593 ------~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
-.......++-.++|..-+.+|.....|+.|+.-|++|+++..+
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 00112344566788888999999999999999999999988543
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=2.4e-08 Score=115.68 Aligned_cols=209 Identities=17% Similarity=0.078 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+..++.+|..+...|+.++|...+.++...... +..........|.++...|++++|..++++++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------- 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-------- 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 455677788888899999998888887766432 2344556677899999999999999999999875
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
+|....++.. +..++.+|++..+...+.+++.. ..+.++.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--- 144 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--- 144 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3444445544 66777777776666666666654 345678888888999999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 593 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~ 593 (1349)
++ ...+++.+|.+|...|++++|+.++++++..... ++.
T Consensus 145 --p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------- 183 (355)
T cd05804 145 --PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------- 183 (355)
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc-------------------------------
Confidence 22 3567888999999999999999999988765311 100
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 000695 594 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 594 ~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALe 632 (1349)
.....+..++.++..+|++++|+..|++++.
T Consensus 184 --------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 --------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred --------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0112345667777778888888888877743
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.96 E-value=6.4e-09 Score=117.68 Aligned_cols=236 Identities=22% Similarity=0.222 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..+|..+...+++++|+..|++.+..- +.....+..++.+ ...+++++|+.+++++.+.. .
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~ 108 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------G 108 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--------ccccccccccccc-cccccccccccccccccccc------c
Confidence 3455567788889999999999999988652 2244456677777 68999999999998876532 1
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
+ ...+..+..++...++++++..++.++.... ..+.....+..+|.++...|++++|+.+|++|+++.
T Consensus 109 ~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--- 176 (280)
T PF13429_consen 109 D---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--- 176 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----
T ss_pred c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 2 2334556678899999999999999977421 234556788899999999999999999999999986
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCch
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 593 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~ 593 (1349)
++ ...++..++.++...|+++++.+.+....... +.++.....+.+. ++..+..+.+........
T Consensus 177 --P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~-~~~lg~~~~Al~~~~~~~---- 241 (280)
T PF13429_consen 177 --PD---DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAA-YLQLGRYEEALEYLEKAL---- 241 (280)
T ss_dssp --TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHH-HHHHT-HHHHHHHHHHHH----
T ss_pred --CC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHH-hccccccccccccccccc----
Confidence 33 34567778999999999999777766555442 3444443333322 222333333333322111
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 594 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 594 ~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
..++.-..++..+|.++...|++++|..+++++++...
T Consensus 242 ----~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 242 ----KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp ----HHSTT-HHHHHHHHHHHT--------------------
T ss_pred ----cccccccccccccccccccccccccccccccccccccC
Confidence 11223445678899999999999999999999987643
No 65
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.4e-08 Score=114.65 Aligned_cols=174 Identities=19% Similarity=0.169 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...-+-.+.++...|++++|+..-...+.+ ++..+.++..-|.+++..++.+.|+.+|+++|.+ +++
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpd 235 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPD 235 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chh
Confidence 334444578888999999998877666654 5667888999999999999999999999999986 555
Q ss_pred CchhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000695 434 HPDTM---------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYL 503 (1349)
Q Consensus 434 hpdta---------~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP-~~a~al~NLA~iy~~lGdydeAle~L 503 (1349)
|.... ..+..-|.-.+..|+|.+|.++|..||.+- ++|. ..+.+|.|.|.++..+|+..+|+.-.
T Consensus 236 h~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 236 HQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred hhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----ccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 55443 344455777889999999999999999863 3332 35788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 504 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 504 ekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
+.|+.+. +.+..+|...|.++..+++|++|++.|++|++.-.
T Consensus 311 ~~Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 311 NEALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999985 55778899999999999999999999999998743
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.93 E-value=1.8e-07 Score=112.31 Aligned_cols=245 Identities=13% Similarity=-0.010 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
.++.....|...+..|+++.|.+.+.++... .+.-...+...|.++..+|+++.|..++.++.+.. +
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p 149 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----G 149 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C
Confidence 4666777888899999999999999887654 23344566778999999999999999999987542 1
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN-- 510 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~-- 510 (1349)
++ ...+....+.++...|+++.|+..+++.++. +|....++..++.+|...|+|++|++.+.+.++..
T Consensus 150 ~~--~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 ND--NILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred cC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 11 1223444588999999999999998888874 34444667789999999999999988887766420
Q ss_pred -------------HHhc---------------CCCcH----HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 511 -------------QRLL---------------GPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 511 -------------ekll---------------G~dhp----~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
...+ -...+ .....+..+|..+...|++++|+..++++++.. +
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----p 294 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----G 294 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----C
Confidence 0000 00011 234667778899999999999999999998753 3
Q ss_pred CCHHHH-HHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHH--HHHHHHHHHHHHCCChHHHHHHHHH--HHHH
Q 000695 559 DDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTY--VAKV 633 (1349)
Q Consensus 559 dhp~T~-eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~sva--elL~~Lg~iy~aqGdyEEAle~yek--ALeL 633 (1349)
++.... ..+..+..+.......+..... ...+.++.-. .++..+|.++...|++++|.++|++ +++.
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e--------~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIE--------KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHH--------HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 333211 1111111121111111111110 0111222333 5677888888888888888888884 5444
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.93 E-value=2.8e-07 Score=110.57 Aligned_cols=250 Identities=12% Similarity=-0.009 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~-A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
...++-.|..+..+|+++.|..++.++.+.. +.. ..+....+.++...|++++|...+++.++.
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3445567888999999999999999987542 222 123444699999999999999999988875
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhc---------------CCCCh----h
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHLTC---------------GPSHP----N 478 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel---------------~e~l~---------------G~dhP----~ 478 (1349)
+|+...++..++.+|...|+|++|++++.+.++. +.... -...| .
T Consensus 183 -~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~ 261 (409)
T TIGR00540 183 -APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRH 261 (409)
T ss_pred -CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC
Confidence 3555677889999999999999999888777632 00000 00122 2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 479 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
....+..+|..+...|++++|+..++++++.. ++....... ......+...++...++..++++++. .+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p 330 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VD 330 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CC
Confidence 45677889999999999999999999999864 333221101 11223334457788888888887754 47
Q ss_pred CCH--HHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 559 DDL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 559 dhp--~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+++ ....++.|+.+ ..+.++.++.......... .+++.. .+..+|.++...|+.++|..+|++++.+.-.
T Consensus 331 ~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~------~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 331 DKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACK------EQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred CChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhh------cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 888 77788888864 3444444444333111111 012222 3558899999999999999999999987665
Q ss_pred cc
Q 000695 637 FY 638 (1349)
Q Consensus 637 l~ 638 (1349)
+.
T Consensus 403 ~~ 404 (409)
T TIGR00540 403 IQ 404 (409)
T ss_pred cc
Confidence 54
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=1.2e-08 Score=105.57 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC
Q 000695 374 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 453 (1349)
Q Consensus 374 lel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGd 453 (1349)
..+|++++++ +|.. +..+|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567777765 3442 557899999999999999999999876 56778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000695 454 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 533 (1349)
Q Consensus 454 yeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~ 533 (1349)
+++|+.+|++++.+ .|....+++++|.++..+|++++|+..|++|+++. +++ ...+.+++.+..
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~---~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YAD---ASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHH
Confidence 99999999999985 46667889999999999999999999999999875 333 344555555543
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=3.2e-08 Score=125.43 Aligned_cols=170 Identities=15% Similarity=0.044 Sum_probs=142.6
Q ss_pred HHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 354 GRQLLESSK-TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 354 A~~LlelG~-~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
++.++.+++ +.-..+....+.+.+-+++.+... .+....++.+||.+...+|.+++|+.+++.++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------- 115 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------- 115 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------
Confidence 344444433 334456666666666677766553 3556889999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
.|+...+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++.++|+|++|+.+|++++..
T Consensus 116 -~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 116 -FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred -CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 4778899999999999999999999999999984 5777899999999999999999999999999972
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
++....++..+|.++..+|+.++|...|++|++.+
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 24556788999999999999999999999999875
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.89 E-value=2.5e-07 Score=110.77 Aligned_cols=244 Identities=15% Similarity=0.029 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..++..+..|...+..|+|++|++.+.++-.. .+++ ...|...+.+...+|+++.|..++.+|.+.
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------ 147 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAEL------ 147 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 34666778888888999999999766654332 1122 222444466669999999999999999764
Q ss_pred CCCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 432 LDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 432 ~Dhpdt-a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.++. .......+.++...|++++|+..++++++. .|....++..++.+|...|+|++|+..+.+..+..
T Consensus 148 --~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 148 --ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred --CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 1222 222334589999999999999999998874 34445667778999999999999997776655321
Q ss_pred -------------------HHh---------------cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 511 -------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 511 -------------------ekl---------------lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
... +....+....++..+|..+...|+.++|...+++++..
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 000 00011223445667899999999999999999888752
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 557 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 557 G~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+.|+.....+..+. ....+.+..... ...+.++.-.+++..+|.++...|++.+|..+|++++++.+.
T Consensus 293 -~~~~~l~~l~~~l~---~~~~~~al~~~e--------~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 293 -QYDERLVLLIPRLK---TNNPEQLEKVLR--------QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred -CCCHHHHHHHhhcc---CCChHHHHHHHH--------HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33554433333321 111111111110 111223445566777888888888888888888888877543
No 71
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=2e-08 Score=105.55 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
..+.+++++|.++..+|++++|+.+|++++.+. +++.....++.++|.+|..+|++++|+.+|++|+.+.... +
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-P 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Confidence 367888999999999999999999999999873 3455567799999999999999999999999999874221 2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000695 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 572 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~ 572 (1349)
..+...+.++.++|..+..+|++++|+.++.+++.++++.++.++..+..+..|+..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 223445566666666666999999999999999999999999998777777666654
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.86 E-value=2.7e-07 Score=110.51 Aligned_cols=238 Identities=9% Similarity=-0.056 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~-A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
++..+.....+|+++.|..+|.++.+. .++. .......+.++...|++++|+..++++++. .|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P 184 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------AP 184 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 444567778999999999999999754 2222 123334589999999999999999999776 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHh---------------cCCCChhHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLT---------------CGPSHPNTAA 481 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel-------------------~e~l---------------~G~dhP~~a~ 481 (1349)
....++..++.+|...|+|++|++++.+.... .... .....+....
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 55677888999999999999999777665531 0000 0012233455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 561 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp 561 (1349)
+...+|..+...|+.++|...++++++. +.++..+..+ + +...++.+++++.+++.++. .++++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~--~l~~~~~~~al~~~e~~lk~-----~P~~~ 328 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---P--RLKTNNPEQLEKVLRQQIKQ-----HGDTP 328 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---h--hccCCChHHHHHHHHHHHhh-----CCCCH
Confidence 6778899999999999999999999873 2334332222 2 22448999999888877644 47777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 562 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 562 ~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
....++..+..- .+....++.......... ++. ..+..++.++.++|+.++|..+|++++.+..+
T Consensus 329 ~l~l~lgrl~~~-~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 329 LLWSTLGQLLMK-HGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 766666666433 333444443333222211 222 34568999999999999999999999987643
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=6.4e-08 Score=122.74 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
...++..++.+|.+....|.+++|+.+++.++++ .|+...+..++|.++.+++++++|+..+++++..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---- 149 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---- 149 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----
Confidence 3445777888999999999999999999999987 5778889999999999999999999999999986
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .+|+...++.++|.++..+|+.++|...|++|++.
T Consensus 150 ----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 150 ----GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999997 36777889999999999999999999999999987
Q ss_pred H
Q 000695 510 N 510 (1349)
Q Consensus 510 ~ 510 (1349)
.
T Consensus 218 ~ 218 (694)
T PRK15179 218 I 218 (694)
T ss_pred h
Confidence 6
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=5.5e-08 Score=100.59 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000695 416 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 495 (1349)
Q Consensus 416 le~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGd 495 (1349)
..++++|+.+ .|+. +.++|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4577888776 2332 567899999999999999999999874 46678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000695 496 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 570 (1349)
Q Consensus 496 ydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~L 570 (1349)
+++|+.+|++|+++. +.....++++|.++..+|++++|+..|++++.+ .++++.........
T Consensus 74 ~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~p~~~~~~~~~~~~ 135 (144)
T PRK15359 74 YTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----SYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHH
Confidence 999999999999864 445788999999999999999999999999976 57777665444433
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.83 E-value=6.4e-08 Score=101.81 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
...+.+++.+|.++..+|++++|+.+|++|+.+. .++.....++.++|.+|...|++++|+.+|++++.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3467789999999999999999999999999873 3445567799999999999999999999999999862211
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 521 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~t 521 (1349)
+..+...+.++.++|..+..+|++++|+.++.+++.++++.++.++..+
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 1112223344444444444999999999999999999999888776443
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=2.9e-06 Score=104.93 Aligned_cols=250 Identities=18% Similarity=0.101 Sum_probs=176.5
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
...+-..+|.++..|..+++++.|.++.++++++. ..+.+.+++.||.++...+++.+|+....-|+.-....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33444678889999999999999999999999872 23457799999999999999999999999998865432
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------------------------------
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC------------------------------------- 472 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~------------------------------------- 472 (1349)
++.-+ .-..+....++.++|+..+...|.+|+..+
T Consensus 547 ~~l~~--------~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVLMD--------GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhch--------hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 22111 111222234555566655555555555111
Q ss_pred ----------------------CCCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000695 473 ----------------------GPSHPNT--AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 528 (1349)
Q Consensus 473 ----------------------G~dhP~~--a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nL 528 (1349)
|++|+.+ ...+...|..+...++-++|..++.+|-.+. +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 1112211 2334456777888888999999999998876 5578899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHH--HHhccCCCchhhhhcCCCcHHHH
Q 000695 529 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHLSVSDL 606 (1349)
Q Consensus 529 A~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEA--l~~~a~a~d~~ia~k~h~svael 606 (1349)
|.++...|++.+|.+.|..|+.+ .|+|.....+++-+.. ..+....++. +...+. ...+...++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dal--------r~dp~n~ea 756 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDAL--------RLDPLNHEA 756 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHH--------hhCCCCHHH
Confidence 99999999999999999999965 7899877666554421 1111112222 211121 223456689
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 607 LDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 607 L~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
|+++|.++.++|+.++|..+|+.|+++-++
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999765
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-07 Score=112.96 Aligned_cols=106 Identities=22% Similarity=0.207 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
.+...-.+|...+...++..|+..|..++.+. ..+..+++.|.+|+.+|.+.+.+..+.+|++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46667788999999999999999999999884 3345678999999999999999999999887643321 1
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
+...++.++..+|..|..+++|+.|+.+|++++.-.
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 223366677778889999999999999999988743
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.1e-07 Score=104.88 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
+...+..+|.+++..|++.+|+..|++++-+ +|.+...+-..|.++...|+++.-..+....+.+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----- 297 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK----- 297 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-----
Confidence 4456778899999999999999999998754 678888888888999999998887776666655521
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
.++.-++--+..++..++|..|+.+.++++.. .+....+|..-|.++..+|+.++|+-.|+.|..+.
T Consensus 298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-- 364 (564)
T KOG1174|consen 298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-- 364 (564)
T ss_pred ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--
Confidence 24445566677788889999999999998874 23445677788999999999999999999988775
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHhHHHHHHHHh-----
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE-YFESKAFEQQEAARN----- 586 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La-~L~qk~~eqAEAl~~----- 586 (1349)
|....+|..|-..|...|.+.+|......++..+.. ..+++.....+. .......+.++..+.
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 556788888889999999999998888888776632 112211111000 000000111111100
Q ss_pred -----------------ccCCCc-hh---hhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccc
Q 000695 587 -----------------GTRKPD-AS---IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 637 (1349)
Q Consensus 587 -----------------~a~a~d-~~---ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl 637 (1349)
....-+ .. ...... .-..++..||.++.+.+.+++|+.+|..||++.++.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 000000 00 000100 123467889999999999999999999999998863
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=1.9e-07 Score=101.70 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=105.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000695 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 446 (1349)
Q Consensus 367 qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ 446 (1349)
.++.++++..+++++.. +|.....|..||.+|..+|++++|+..|++|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 45677888888888865 6777889999999999999999999999999987 4667888999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 447 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 447 ly-~~lGd--yeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
++ ...|+ +++|+.++++++.+ +|....+++++|.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 75 67787 59999999999985 46667899999999999999999999999999875
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=3.7e-07 Score=99.49 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=107.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000695 409 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 488 (1349)
Q Consensus 409 lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~ 488 (1349)
.++.++++..+++++.. +|+....|..||.+|...|++++|+..|++|+.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67788899999999886 5777889999999999999999999999999986 3566788899999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 000695 489 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 563 (1349)
Q Consensus 489 iy-~~lGd--ydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T 563 (1349)
++ ...|+ +++|+.+|++++++. +....++++||.++..+|+|++|+.++++++++. ++++.+.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~ 181 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRT 181 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHH
Confidence 74 67787 599999999999874 3446788999999999999999999999998764 5555443
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.3e-07 Score=110.90 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--h
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--E 429 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er--i 429 (1349)
.++..+...+.+|+..|++.+.+..+..+++...... .+...++.++..+|..|..+++++.|+.+|++++.-.+. +
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 5566677778888888998888888888877654432 122346777888999999999999999999999875432 0
Q ss_pred ----------c------CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000695 430 ----------L------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 493 (1349)
Q Consensus 430 ----------l------G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l 493 (1349)
. ---.|..+.....-|..++..|+|..|+.+|.+|+.. .|..+.+|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 0 0113444555566699999999999999999999874 488899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 494 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 494 GdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
|++..|+...+.++++ ++.....|..-|.++..+.+|++|++.|+++++. ++....+..++..+
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999999987 4667888999999999999999999999999864 46666666666655
Q ss_pred HH
Q 000695 574 ES 575 (1349)
Q Consensus 574 ~q 575 (1349)
..
T Consensus 470 ~~ 471 (539)
T KOG0548|consen 470 VE 471 (539)
T ss_pred HH
Confidence 44
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.6e-08 Score=113.61 Aligned_cols=288 Identities=15% Similarity=0.064 Sum_probs=208.7
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
......++..+...|..++.+.+|.+|+..|..|+.++ |..+..|.+.+.+|+..++|++|+-.+++.+.+
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~- 112 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL- 112 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec-
Confidence 34455678889999999999999999999999999873 455889999999999999999999999999886
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCH
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL--------YLLHLTCGPS--HPNTAATYINVAMMEEGLGNV 496 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerAL--------el~e~l~G~d--hP~~a~al~NLA~iy~~lGdy 496 (1349)
.+.....+..++.|+..+++..+|.+.|+..- .....+...+ .|........-+.++..+|++
T Consensus 113 -------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 113 -------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred -------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 23345577788888888888888887765221 1111111111 244445555678899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000695 497 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 576 (1349)
Q Consensus 497 deAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk 576 (1349)
++|+..--..+++. ...+.+++..|.++...++.+.|+.+|++++.+ +++|.....+...+..+...
T Consensus 186 ~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHHHH
Confidence 99988766666553 345677888899999999999999999999954 89998887777666554332
Q ss_pred hH---------HHHHHHHh--ccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc---CCCC
Q 000695 577 AF---------EQQEAARN--GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY---QDNN 642 (1349)
Q Consensus 577 ~~---------eqAEAl~~--~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~---qn~~ 642 (1349)
.. ....+... ....+++. +....+.+|.+.+.++..+|+..+|+.--..|+.|....- -.++
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 21 12223322 33333322 3346788899999999999999999999999999966533 2345
Q ss_pred CCCCCCCchhhcccCCccCCCCCCC
Q 000695 643 LTSPDGSSKEVLRESSDEETHAPEP 667 (1349)
Q Consensus 643 ta~~~l~~~e~~~~~sdE~~~~~~~ 667 (1349)
..|..+...+.+-+|-...++.+..
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5566666777777766666655544
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=2.2e-06 Score=97.68 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++++|+-|+..|-++.|+..|....+. ......++..|..+|....++++|++..++.+.+-.+ .
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~ 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence 3567899999999999999999999887643 2233458889999999999999999988887766322 2
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
....++..|..||..+....+.+.|..++.+|+.. +|..+.+-..+|.++...|+|+.|++.++.+++-.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-- 244 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-- 244 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--
Confidence 24567889999999999999999999999999984 45566777889999999999999999999988753
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
+..+..+...|..+|..+|+.++.+.++.++.+.+
T Consensus 245 -----~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 245 -----PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred -----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 44567888889999999999999999999998764
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-07 Score=109.57 Aligned_cols=165 Identities=18% Similarity=0.130 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.++-.+...+...+|..|+.+..+++.. ++....+|..-|.++..+++.++|+..|+.|..+. |
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p 365 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------P 365 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------h
Confidence 3444556677788899999999888865 45566788899999999999999999999998873 6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHHHHHHh
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA-MMEEGL-GNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA-~iy~~l-GdydeAle~LekALei~ekl 513 (1349)
....+|..|-.+|...|++.+|.-..+.++..+. ..+.++..+| .++... ---++|..+|+++|.+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--- 434 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--- 434 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---
Confidence 6788999999999999999999999888887653 3456666665 443322 23478999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
|.+..+-..+|.++...|.+..++.++++++.++
T Consensus 435 -----P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 435 -----PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred -----CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 5556667789999999999999999999999876
No 85
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.72 E-value=1.3e-05 Score=97.57 Aligned_cols=225 Identities=16% Similarity=0.046 Sum_probs=119.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 000695 363 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 442 (1349)
Q Consensus 363 ~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~ 442 (1349)
+.+...+++.|..+|.+|... ..+.++|+.-+.+...++..++|+.+++.+|..+ |+.-..|.
T Consensus 627 le~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~l 689 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWL 689 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHH
Confidence 334445555555555554432 1233455555555555555555555555555542 34445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000695 443 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 522 (1349)
Q Consensus 443 NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA 522 (1349)
.+|.++..+++.+.|.+.|...+..+ |...-.+..|+.+-...|+.-.|...|+++.-. .|..+
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~ 753 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNA 753 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcc
Confidence 56666666666555555555544421 333344555555555555555555555555322 13334
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 602 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~s 602 (1349)
..|...-++-.+.|+.+.|...+.+|++-+ +.....+...-||.---++......|++.. . .
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQec-----p~sg~LWaEaI~le~~~~rkTks~DALkkc----------e---~ 815 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQEC-----PSSGLLWAEAIWLEPRPQRKTKSIDALKKC----------E---H 815 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccchhHHHHHHhccCcccchHHHHHHHhc----------c---C
Confidence 444444445555666666666666666543 222222222222221111111122222221 1 1
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 603 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 603 vaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
-..++..+|..+....++++|+..|.+|+++.+..+
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 223578899999999999999999999999988766
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=107.40 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
....+..|...|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|+.-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4567899999999999999999999999999977 6788889999999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 497 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdyd 497 (1349)
+|...++|..||.+|..+|+|++|++.|++||++ .|.......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6789999999999999999999999999999986 3444455666666665555544
No 87
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=2e-06 Score=100.40 Aligned_cols=170 Identities=9% Similarity=0.136 Sum_probs=135.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 440 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG-dyeeAle~~qKALeI~ErilG~Dhpdta~a 440 (1349)
.++...+++++|+.++.+++.+ +|....+++..+.++..+| ++.+|+.++.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 3456678999999999999977 6778889999999999998 689999999999876 4666778
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 441 YGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 441 y~NLA~ly~~lGdy--eeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
+++.+.++..+|+. ++++.++.+++.+ +|....++.+.+.++..+|+|++|++++.++|+..
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------- 172 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------- 172 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------
Confidence 99999999999874 7788999888874 56778899999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~l---Gdy----dEAie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
+....+++..+.++..+ |.+ ++++.+..+++.+ .+++.....-+.
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~ 224 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLR 224 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHH
Confidence 33456778888887765 333 4677777777765 355554443333
No 88
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.67 E-value=3e-06 Score=112.21 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
..+..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|...|++++|..++.+..... .|. .
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi-~ 576 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI-D 576 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC-C
Confidence 34455556777888888888877766542 11222 4467777777777777777777777664420 111 1
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 514 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekll 514 (1349)
|+ ..+|+.|..+|.+.|++++|+++|++..+. +......+|+.+...|.+.|++++|+.+|.+..+.- .
T Consensus 577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v 645 (1060)
T PLN03218 577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---V 645 (1060)
T ss_pred Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C
Confidence 22 345666677777777777777777766542 111223456666666777777777777766654321 1
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
. + ...+|..|..+|...|++++|.+++++..
T Consensus 646 ~---P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 646 K---P-DEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred C---C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 1 13345556666666666666666665544
No 89
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=8.6e-07 Score=93.85 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=103.1
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
..+..+..++++|.+|...|++++|+.+|++++.+. ++++....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 345677889999999999999999999999999863 2344456789999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHh-------cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 513 LLGPDHIQTAASYHAIAIALSL-------MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~-------lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
+.....+..+|.+|.. +++++.|+.++++|++++++.+..++..+..+..|+..+
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 2234555666777665 456788889999999999888877777777777777543
No 90
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.66 E-value=2.8e-06 Score=92.77 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|+|.+|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46778999999999999999999999998764 5678888999999999999999999999999998874 6
Q ss_pred CCchhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVA 487 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lG-----------dyeeALe~yerALel~e~l~G~dhP~~--------------a~al~NLA 487 (1349)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ ++++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999877653 2346777777666543 222222 22334578
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 542 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAi 542 (1349)
..|...|.|..|+..++.+++.+ ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999999876 666777889999999999999988554
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=5.3e-07 Score=90.39 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=91.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
+|....++..+|.++...|++++|+.++++++.+ ++.....+.++|.+|..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5666788999999999999999999999998876 3556788999999999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+|.....+.++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35567788999999999999999999999999875
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=8.9e-06 Score=100.44 Aligned_cols=268 Identities=19% Similarity=0.132 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--------
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN-------- 426 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~-------- 426 (1349)
+.++-...++...|++++|+.++.+.... -.+...++...|.+|..+|++++|...|+..|...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44566677888899999999988765432 34566788889999999999999999988877641
Q ss_pred --HHhcCCCC-------chhHHHHHHHHHHHHH------------c-CCHH-HHHHHHHH--------------------
Q 000695 427 --ERELGLDH-------PDTMKSYGDLAVFYYR------------L-QHTE-LALKYVKR-------------------- 463 (1349)
Q Consensus 427 --ErilG~Dh-------pdta~ay~NLA~ly~~------------l-Gdye-eALe~yer-------------------- 463 (1349)
+...|... ......|-.++..|-+ . .+|. .+..|+..
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP 156 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh
Confidence 11111100 0011111111111100 0 0010 01111111
Q ss_pred --------HHHHHHHhc---C---------CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000695 464 --------ALYLLHLTC---G---------PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 522 (1349)
Q Consensus 464 --------ALel~e~l~---G---------~dhP~-~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA 522 (1349)
.+.-+.... + ...|. ...+++.||..|...|++++|+.++++|++.. |...
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ 228 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLV 228 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcH
Confidence 111111110 0 01222 35678899999999999999999999999874 5567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCCCchhhhhcCCC
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN-GTRKPDASIASKGHL 601 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~-~a~a~d~~ia~k~h~ 601 (1349)
..|...|.+|-..|++.+|..+++.|..+ ...| +.+.+...-..+.....+.|+.... ...... ......
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~---~~~~~L 299 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEAREL-----DLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV---DPLSNL 299 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC---CcccCH
Confidence 88999999999999999999999988754 2222 2222222223334444444443322 222211 111111
Q ss_pred c-HH--HHHHHHHHHHHHCCChHHHHHHHHHHHHHhccccCCCCCCCCC
Q 000695 602 S-VS--DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPD 647 (1349)
Q Consensus 602 s-va--elL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~qn~~ta~~~ 647 (1349)
. +. ......|.+|.++|++-.|+..|....+++..+..++-.=|.+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y 348 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY 348 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 1 11 1223458889999999999999999999999988776665555
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.62 E-value=1.5e-06 Score=112.29 Aligned_cols=173 Identities=10% Similarity=0.074 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+...+..+.+.+++|+++.|+..|+++++. +|....+...++.++...|++++|+.++++++. .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--------p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--------S 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--------C
Confidence 446778889999999999999999999876 344432223888888889999999999999972 1
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
.+.....+..+|.+|..+|+|++|+++|+++++. .|....++..|+.+|...++.++|+..+++++...
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--- 166 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--- 166 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---
Confidence 2334455666788999999999999999999985 34446667788999999999999999999987764
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 564 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ 564 (1349)
+. ...+..++.++..++++.+|++.++++++. .|++....
T Consensus 167 -----p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~~ 206 (822)
T PRK14574 167 -----PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEVL 206 (822)
T ss_pred -----cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 11 222344566666678887799999999876 36555443
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.61 E-value=2e-06 Score=91.07 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=91.3
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000695 390 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 469 (1349)
Q Consensus 390 ~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e 469 (1349)
..++..+.+++.+|.+|...|++++|+.+|++++.+. .+.+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 3456778899999999999999999999999999873 234445678999999999999999999999999985
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhcCCC
Q 000695 470 LTCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 470 ~l~G~dhP~~a~al~NLA~iy~~lGd-------ydeAle~LekALei~ekllG~d 517 (1349)
+|.....+.++|.+|..+|+ ++.|+.+|++|+++.++....+
T Consensus 102 ------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 ------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred ------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456677788888877655 6667777777777766554433
No 95
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=5.6e-07 Score=90.22 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=89.5
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
+|.....+..+|.+++..|++++|+.++++++.+ +|.....+.++|.+|..+|++++|+.+|++++++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4556778899999999999999999999998874 35567888999999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335677899999999999999999999999976
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=1.3e-06 Score=112.33 Aligned_cols=219 Identities=6% Similarity=-0.048 Sum_probs=158.9
Q ss_pred hCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 388 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 388 lG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.+...+....++..|..+|...+++++|+..+..+++. +|+.+..|+.+|.+|+..+++.+|... +++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 35678889999999999999999999999999988775 678889999999999999998888765 55543
Q ss_pred HHHh------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Q 000695 468 LHLT------------CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 535 (1349)
Q Consensus 468 ~e~l------------~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~l 535 (1349)
.... .+ +++..-.+++.||.||..+|++++|...|+++|++. +..+.++.++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE 163 (906)
T ss_pred cccccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh
Confidence 3211 01 234444689999999999999999999999999874 55678899999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHH
Q 000695 536 EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPS 613 (1349)
Q Consensus 536 GdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~q--k~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~i 613 (1349)
++++|++++.+|+..+-..- ...... ..|..++.. ..++.-..+....... . +-..+.+++.-|=..
T Consensus 164 -dL~KA~~m~~KAV~~~i~~k--q~~~~~--e~W~k~~~~~~~d~d~f~~i~~ki~~~---~---~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 164 -DKEKAITYLKKAIYRFIKKK--QYVGIE--EIWSKLVHYNSDDFDFFLRIERKVLGH---R---EFTRLVGLLEDLYEP 232 (906)
T ss_pred -hHHHHHHHHHHHHHHHHhhh--cchHHH--HHHHHHHhcCcccchHHHHHHHHHHhh---h---ccchhHHHHHHHHHH
Confidence 99999999999998865432 111122 223333322 1111111111000000 0 011355667777788
Q ss_pred HHHCCChHHHHHHHHHHHHHhcc
Q 000695 614 HDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 614 y~aqGdyEEAle~yekALeL~~k 636 (1349)
|...++|++++.+++.+|++..+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 89999999999999999998665
No 97
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.58 E-value=7.1e-06 Score=108.75 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..+...|...|++++|..+|.+...... ...|+ ..+|+.|..+|...|++++|..+|++..+. |
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g-- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N-- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--
Confidence 44566667888899999999999988765311 11233 457888889999999999999999887653 2
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
-.....+|+.|...|...|++++|+.+|.+.... | -.|+ ..+|..|...|...|++++|+++|+++.+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---- 678 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ---- 678 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 2234578899999999999999999999987652 2 1333 457888999999999999999999987653
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHhHHHHHHHHhccCCC
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKP 591 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L--~qk~~eqAEAl~~~a~a~ 591 (1349)
|- .....+|..|..+|...|++++|+++|++.... -+.+ +. ..+..|... .....+.+..+......
T Consensus 679 -G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~P-dv---vtyN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 679 -GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRP-TV---STMNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred -CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCC-CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 11 123467888999999999999999998865432 1122 22 223333332 33333333333321110
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 000695 592 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 592 d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL 633 (1349)
....++ ...|..+-..+...|++++|...|.++++.
T Consensus 748 -----~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 -----LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 011112 234566667888999999999999988763
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=6.9e-07 Score=86.50 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
.+++.+|..+...|++++|+.+|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56889999999999999999999999874 23455567788999999999999999999999999764 455
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 567 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal 567 (1349)
+....+++.+|.++..+|++++|+.++.+++.. .+++.....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~ 116 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQ 116 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHH
Confidence 555677899999999999999999999999876 36666555443
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=1.5e-06 Score=91.28 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
++.....+.+|..++..|++++|..+|+-++.+ +|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 677888999999999999999999999998877 5778899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.|+....+.++|.+|...|+.+.|+..|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 24456789999999999999999999999999988
No 100
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=7.6e-06 Score=92.12 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
....++..|..++..|+|++|+..|++++... +..+....+...||.+|+..++|++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45668889999999999999999999998763 4556777788999999999999999999999999874 7
Q ss_pred CCchhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhcCCCCh--------------hHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHP--------------NTA 480 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lG---------------d---yeeALe~yerALel~e~l~G~dhP--------------~~a 480 (1349)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ ++.. ..+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999999875554 1 245666666666532 1111 122
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
.--..+|..|.+.|.|..|+.-++.+++-+ ++.+....+++.++.+|..+|..++|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 333467889999999999999999999876 5667788899999999999999999987654
No 101
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=3.3e-06 Score=102.81 Aligned_cols=243 Identities=11% Similarity=0.093 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.+|..+.-++..++|..++...++.|.. +++...++...|..+..+|+-++|..+.+.++.. ++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------Cc
Confidence 4667777788899999999998888863 4455567888999999999999999999999874 33
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
..-.+|.-+|.++....+|++|+++|+.|+.+ .++...++..|+.+..++++|+-....-.+.++..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----- 139 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----- 139 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----
Confidence 44567888999999999999999999999985 35567889999999999999998888877777765
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhh
Q 000695 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 595 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~i 595 (1349)
+..-..|..+|..+...|++..|...++.-.......+.........+...-..........++++...... ...+
T Consensus 140 ---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-e~~i 215 (700)
T KOG1156|consen 140 ---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-EKQI 215 (700)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-hhHH
Confidence 344566788899999999999999887765554432222222222222222222222233333333321110 1111
Q ss_pred hhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 596 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 596 a~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.. -......-+.++..+|++++|...|..-+..++.
T Consensus 216 ~D-----kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 216 VD-----KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred HH-----HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 11 1123445677888899999999988877766543
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=1.3e-06 Score=97.30 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=127.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
...+..+...|+-+.+..+..+++. .++.....+..+|......|+|.+|+..+++|..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 5567777888888888887777653 34555556666999999999999999999999886 4667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
...|+.+|.+|.++|++++|..-|.+++++. +.-..+++|||+.|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8999999999999999999999999999974 2234678999999999999999999998876432 2
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHE 545 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~l 545 (1349)
....+..||+.+...+|++++|....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 13467889999999999999987654
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=8.6e-07 Score=104.87 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.|+..|..++..|+|++|+.+|.+|+.+ .+....+|.++|.+|..+|++++|+.++++|+.+ .|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DP 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4677899999999999999999999976 5566789999999999999999999999999997 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999986
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=1.9e-06 Score=90.48 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
......++..|..++..|++++|..+|+-...+ ++.....|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 455678899999999999999999999988755 6788999999999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
.++....+.++|.||+..|+.+.|++.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35567889999999999999999999999999986
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.54 E-value=4.3e-06 Score=86.21 Aligned_cols=136 Identities=22% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
.+..++......+..++...+...+.+.+.- .+..+....+...+|.+++..|++++|...|++++.. ..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----AP 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CC
Confidence 4556666777777899999887777666554 2445566788999999999999999999999999874 23
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 507 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekAL 507 (1349)
+......+...||.++...|+|++|+..++.. .+.+.....+..+|.+|..+|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33444667889999999999999999998652 1334456677889999999999999999999885
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=1.8e-06 Score=83.51 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
..++.+|..+...|++++|+.+|.+++.. .++++....+++.+|.+++..|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46889999999999999999999999875 24455567889999999999999999999999999752 455
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+....++..+|.++..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667789999999999999999999999999874
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=3.6e-06 Score=108.32 Aligned_cols=252 Identities=13% Similarity=0.093 Sum_probs=169.5
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
..+.......+..+...|...+++++|+.++..+++. +|....+|+.+|.+|+..+++.+|... +++.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 3456667788888899999999999999999988765 788888999999999999998888766 555543
Q ss_pred HHhc-----------CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000695 427 EREL-----------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 495 (1349)
Q Consensus 427 Eril-----------G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGd 495 (1349)
.... -.++++.-.+++.||.||-.+|++++|...|+++|++ .|..+.+++++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 2210 0123444468999999999999999999999999985 366788999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhc---------------CCCcH-----------------HHHHHHHHHHHHHHhcCChhHHHH
Q 000695 496 VHVALRYLHKALKCNQRLL---------------GPDHI-----------------QTAASYHAIAIALSLMEAYPLSVQ 543 (1349)
Q Consensus 496 ydeAle~LekALei~ekll---------------G~dhp-----------------~tA~a~~nLA~ay~~lGdydEAie 543 (1349)
+++|+.++.+|+..+...- .++.. ..+..+.-|=..|...++|++++.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999998753210 00000 011222223356667777888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHH
Q 000695 544 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST 623 (1349)
Q Consensus 544 ~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEA 623 (1349)
+++.++++- +. -..++..|+.++.+.+ ++|+.+.+.+ .+..+-.....+..|
T Consensus 245 iLK~iL~~~-----~~---n~~a~~~l~~~y~~kY-------------------~~~~~~ee~l-~~s~l~~~~~~~~~~ 296 (906)
T PRK14720 245 ILKKILEHD-----NK---NNKAREELIRFYKEKY-------------------KDHSLLEDYL-KMSDIGNNRKPVKDC 296 (906)
T ss_pred HHHHHHhcC-----Cc---chhhHHHHHHHHHHHc-------------------cCcchHHHHH-HHhccccCCccHHHH
Confidence 777777652 11 1122333333333221 1223333332 333333334677889
Q ss_pred HHHHHHHHHHhcc---ccCCCCCCC
Q 000695 624 LKRKTYVAKVKGN---FYQDNNLTS 645 (1349)
Q Consensus 624 le~yekALeL~~k---l~qn~~ta~ 645 (1349)
+..|++-+.+..- +++++|.+.
T Consensus 297 i~~fek~i~f~~G~yv~H~~WGvG~ 321 (906)
T PRK14720 297 IADFEKNIVFDTGNFVYHRTWGVGK 321 (906)
T ss_pred HHHHHHHeeecCCCEEEEcCCCCce
Confidence 9999888876332 344555553
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.50 E-value=1.9e-05 Score=102.31 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=94.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 359 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 359 elG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
.+..++...|++++|+.++++++. ..+.....+..+|.+|..+|+|++|+.+|+++++. .|+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--------p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~ 136 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--------SMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNP 136 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCH
Confidence 445566677999999999998871 12334455666688999999999999999999876 34445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.++..|+.+|...+++++|++.+++++.. .|.. ..+..++.++...+++.+|+..|+++++..
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~-~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAER--------DPTV-QNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhccc--------Ccch-HHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 66678899999999999999999888764 2332 223445666666777777999999988763
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=3.4e-05 Score=97.16 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 479 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
....|..++.+|...|+|.+|+.+|-.+...- .-..+..|+.+|.+|..+|.+++|+++|.+++.. .+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p 480 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----AP 480 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CC
Confidence 35678899999999999999999998776432 1234788999999999999999999999999965 35
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC--Cchh-hhhcCCCcHHHHHHHHHHHHHHCCChHHHH
Q 000695 559 DDLRTQDAAAWLEYFESKAFEQQEAARNGTRK--PDAS-IASKGHLSVSDLLDYINPSHDTKGRNVSTL 624 (1349)
Q Consensus 559 dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a--~d~~-ia~k~h~svaelL~~Lg~iy~aqGdyEEAl 624 (1349)
+|. ++.-.|+.++++.+...+|+...... ++.. ...........++.....+|...|+.++=+
T Consensus 481 ~~~---D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 481 DNL---DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred Cch---hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 554 55666666666666666666543321 1211 112223345667788888899999988733
No 110
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=1.9e-05 Score=92.31 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=134.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000695 406 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYI 484 (1349)
Q Consensus 406 y~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lG-dyeeALe~yerALel~e~l~G~dhP~~a~al~ 484 (1349)
+...+++++|+..+.++|.+ +|....++...+.++..+| ++++|+.++.+++.. +|....+++
T Consensus 47 l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 33456788999999999987 5777889999999999998 689999999999974 566677899
Q ss_pred HHHHHHHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 000695 485 NVAMMEEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 485 NLA~iy~~lGdy--deAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~ 562 (1349)
+.+.++..+|+. ++++.++.+++++. +....++...+.++..+|+|++|++++.+++++ .+.+..
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~~N~s 177 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----DVRNNS 177 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CCCchh
Confidence 999999999874 67888998888764 446778999999999999999999999999876 344443
Q ss_pred HHHHHHHHHHHHH--HhH----HHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHH----CCChHHHHHHHHHHHH
Q 000695 563 TQDAAAWLEYFES--KAF----EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 563 T~eal~~La~L~q--k~~----eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~a----qGdyEEAle~yekALe 632 (1349)
...-+.++..-.. ... +.+..+..... ...+.-..++++++.++.. ++++.+|+..+.++++
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI--------~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI--------LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHH--------HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3333333221100 000 11111111111 1122334578999999977 4566778887777665
No 111
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.46 E-value=6e-06 Score=105.60 Aligned_cols=237 Identities=11% Similarity=0.008 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD- 433 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D- 433 (1349)
..+..+...|...|++++|+.+|.+.... ...++ ..+|..+..+|...|++++|...+..+++. |..
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g~~~ 358 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPL 358 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----CCCC
Confidence 34455556666677777777777665432 11111 234555555566666666665555544432 110
Q ss_pred -----------------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000695 434 -----------------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 484 (1349)
Q Consensus 434 -----------------------------hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~ 484 (1349)
.+ ...+|+.|...|...|+.++|+++|++.+.. | -.|+ ..+|.
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~ 430 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFL 430 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHH
Confidence 01 1234555555555555555555555554431 1 1122 23344
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000695 485 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 564 (1349)
Q Consensus 485 NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ 564 (1349)
.+-..+...|++++|.++|+...+.. |-. + ....|..+..+|.+.|++++|.+++++.- . ..+..+.
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~-p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~-~p~~~~~ 497 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENH----RIK-P-RAMHYACMIELLGREGLLDEAYAMIRRAP------F-KPTVNMW 497 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhc----CCC-C-CccchHhHHHHHHhcCCHHHHHHHHHHCC------C-CCCHHHH
Confidence 55555555566666655555544321 110 1 12345556666667777776666554320 1 1122222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 000695 565 DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 565 eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL 633 (1349)
.++... +...+..+.++.......... +.....|..|..+|...|++++|.+.+++..+.
T Consensus 498 ~~Ll~a-~~~~g~~~~a~~~~~~l~~~~--------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 498 AALLTA-CRIHKNLELGRLAAEKLYGMG--------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHH-HHHcCCcHHHHHHHHHHhCCC--------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 111111 112222333332222111111 122235778889999999999999999876543
No 112
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.45 E-value=9.2e-06 Score=103.94 Aligned_cols=129 Identities=13% Similarity=0.086 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
..+|+.|...|...|++++|+.+|++.... |. .|+ ..+|..+...|...|++++|.+++..+++. |
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g-- 355 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G-- 355 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--
Confidence 345666666666666666666666654331 11 122 235666666666777777777666665542 1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
.+....+++.|..+|.+.|++++|.+.|++..+ + ...+|..|...|...|+.++|+++|++..
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112234566677777777777777777765432 1 23467778888888888888888887654
No 113
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=9.9e-05 Score=81.83 Aligned_cols=226 Identities=18% Similarity=0.070 Sum_probs=161.8
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000695 390 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 469 (1349)
Q Consensus 390 ~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e 469 (1349)
++....+..|..-+.+|....+|++|...+.+|.+.++..... ...+.+|-..|.+...+..+.++..+|++|..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl--fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL--FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555567778888899999999999999999999888764332 34678899999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 470 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 470 ~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
... .|+++..-..-|--....-+.++|+.+|++++.+.+.- .........+...+++|.....|.+|...+.+-.
T Consensus 103 E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 103 ECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 753 45554433333333445678999999999999998542 3333455677788999999999999999888877
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHH
Q 000695 550 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 627 (1349)
Q Consensus 550 eI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~y 627 (1349)
.+..+.-.-..+--+.....|.++....+.+++..+.....+..... +.-...+.+|-..|. .|+.+++....
T Consensus 178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~----sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK----SEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC----hHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 77766544444444455556667777777777776654322222211 123345555555554 78888876543
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.41 E-value=2.3e-06 Score=101.37 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000695 399 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 478 (1349)
Q Consensus 399 y~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~ 478 (1349)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788899999999999999999986 4566789999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 479 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
...+|+++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 67789999999999999999999999999874
No 115
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00014 Score=88.31 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=117.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----------
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------- 426 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~----------- 426 (1349)
|+.|.+.++.++.++|+..+. .+ ++..-.++..-|.+++++|+|++|+..|+..+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 788888999999999998887 11 22234467788999999999999999998863210
Q ss_pred ------------HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHH
Q 000695 427 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVA 487 (1349)
Q Consensus 427 ------------ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh-------P~~a~al~NLA 487 (1349)
.+.......++-..++|.|+++...|+|.+|++.+++|+.+++..+..+. .++..+...||
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 00111122336678999999999999999999999999999887664332 23456778899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 531 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~a 531 (1349)
.+|+.+|+-++|...|...+... -.|.+..+.+-+||-.+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhh
Confidence 99999999999999998887653 34555556665555443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=3.9e-06 Score=93.64 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=114.2
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
......+...+..+|+..+..|+|.+|+..++++..+ .|..+.+|+.+|.+|.+.|++++|..-|.+|+++.
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 3344455556666899999999999999999999866 57778899999999999999999999999999984
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 505 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek 505 (1349)
+.-...++|||..|.-.|+++.|..++.++... .+....+..||+.+...+|++++|.....+
T Consensus 165 --------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 --------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 344578899999999999999999999998752 233456788999999999999999876644
No 117
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2e-06 Score=97.51 Aligned_cols=122 Identities=22% Similarity=0.267 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 394 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
..+.-+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.||.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 34555667788889999999999999999997 4677888999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChh
Q 000695 474 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 539 (1349)
Q Consensus 474 ~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdyd 539 (1349)
+|....+|..||.+|..+|++.+|++.|++||++. ++. .....+|..+-..+++..
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~N---e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDN---ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCc---HHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999999999999985 333 344445555544444443
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2.4e-05 Score=94.79 Aligned_cols=220 Identities=18% Similarity=0.101 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
..++..-..+...|+|++|+....+.+.+. |....+++.--.++...++|++|+.+.++-.... .
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-------~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-------V 77 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-------h
Confidence 455555566778889999988888877652 3334455555566777888888874443322110 0
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---- 510 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~---- 510 (1349)
.....+.-|.|++++++.++|+..++ .++ +..-.++..-|.+++++|+|++|+..|+..++-.
T Consensus 78 --~~~~~fEKAYc~Yrlnk~Dealk~~~-~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 78 --INSFFFEKAYCEYRLNKLDEALKTLK-GLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred --cchhhHHHHHHHHHcccHHHHHHHHh-ccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 01112677899999999999998887 111 1123355567888899999999999998764311
Q ss_pred -------------------HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000695 511 -------------------QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 571 (1349)
Q Consensus 511 -------------------ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La 571 (1349)
.+........+...+||.|.++...|+|.+|++.+++|++++++.+..++..--+..
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie---- 220 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE---- 220 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH----
Confidence 011111122356788999999999999999999999999999888765543200000
Q ss_pred HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 572 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 572 ~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
..++-+.-.|+.++..+|+-++|...|...++...
T Consensus 221 -----------------------------~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 221 -----------------------------EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 02333455667777778888888887777666443
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=3.2e-05 Score=92.52 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
|..+..++..|++++|+..+...+. .+|.....+...+.++...++..+|.+.+++++.+ .|..
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~~ 373 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPNS 373 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Confidence 3334444444444444444444221 13333444444455555555555555555555443 1223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
.....++|..|...|++.+|+.++++.+. ..|+....|..||..|..+|+..+|..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~---------------- 429 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALL---------------- 429 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHH----------------
Confidence 33444555555555555555544444433 223334444445555555444333322
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
..|..|...|++++|+..+..|.+. .+.+.+....+-..+.++
T Consensus 430 ---------A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 430 ---------ARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQL 472 (484)
T ss_pred ---------HHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHH
Confidence 2234444556666666665555433 344455444444444433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=5.9e-06 Score=101.84 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=138.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000695 361 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 440 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~a 440 (1349)
++.|...||+-.=-.+|++|.++...+ .+.+.+.+|...+..++|.+|..+++.++++ .+....+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 456677777777777888888876543 3557778888888899999999999999998 4677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000695 441 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 520 (1349)
Q Consensus 441 y~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~ 520 (1349)
|+++|.+...+++++.|.++|.+++.+ .|+.+.+++|++..|...++-.+|...+++|+++. .+|
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~-- 586 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQH-- 586 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCC--
Confidence 999999999999999999999999874 46778999999999999999999999999999986 122
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
..++.|.-.+....|.+++|++.|++-+.+.+...
T Consensus 587 -w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 587 -WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred -CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 34566667777899999999999999998876655
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.3e-05 Score=80.79 Aligned_cols=123 Identities=18% Similarity=0.088 Sum_probs=96.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000695 408 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 487 (1349)
Q Consensus 408 ~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA 487 (1349)
..++...+...+.+.+.- ..+.+....+.+.+|.+++..|++++|...|+.++... ++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 467777776666665543 34455667888999999999999999999999998742 23344456788899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
.++...|++++|+..++.. .+.......+..+|.+|..+|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2233456677789999999999999999999874
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.33 E-value=3.4e-05 Score=84.33 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
....++..|..++..|+|.+|+..|++.+..+ +.++....++..+|.++...|+|+.|+..|++-++.. +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678899999999999999999999998763 4577888899999999999999999999999998876 7
Q ss_pred CcHHHHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000695 517 DHIQTAASYHAIAIALSLME-----------AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 585 (1349)
Q Consensus 517 dhp~tA~a~~nLA~ay~~lG-----------dydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~ 585 (1349)
+|+....+++.+|.++..+. ...+|+..+++.+..+ |+.+....+...|..+.....+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~------ 142 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAE------ 142 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHH------
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHH------
Confidence 77888889999999876542 2235555555555443 6777777777777665443222
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 586 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 586 ~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
--..+|..|.+.|+|..|+.+++.+++-++.
T Consensus 143 --------------------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 143 --------------------HELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp --------------------HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred --------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 2234555566666666666666666655443
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.30 E-value=6e-05 Score=86.45 Aligned_cols=213 Identities=18% Similarity=0.078 Sum_probs=148.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
.++.-+.-...||..++..|++..|+..|..|++. +|....+++.-|.+|..+|+-.-|+.-+.++|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45555667788999999999999999999999986 5778889999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--c------HHHHHHHHHHHHHHHhcCChhHHH
Q 000695 471 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--H------IQTAASYHAIAIALSLMEAYPLSV 542 (1349)
Q Consensus 471 l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d--h------p~tA~a~~nLA~ay~~lGdydEAi 542 (1349)
.|+...+....|.+++.+|++++|..-|.++|...-.. |.. + ......+.....-+...|++..|+
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 47788889999999999999999999999998753110 000 0 001111222233445678999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHH
Q 000695 543 QHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS 622 (1349)
Q Consensus 543 e~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEE 622 (1349)
.+....+++. +.+ +..+..-+.++....+...|+.. ...+.+...+..+.++.++.+++..|+.+.
T Consensus 176 ~~i~~llEi~-----~Wd---a~l~~~Rakc~i~~~e~k~AI~D------lk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 176 EMITHLLEIQ-----PWD---ASLRQARAKCYIAEGEPKKAIHD------LKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHHHhcC-----cch---hHHHHHHHHHHHhcCcHHHHHHH------HHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 9888888763 222 22222222333333333333321 112222333455778888888888888888
Q ss_pred HHHHHHHHHHHh
Q 000695 623 TLKRKTYVAKVK 634 (1349)
Q Consensus 623 Ale~yekALeL~ 634 (1349)
++.-.+..|++.
T Consensus 242 sL~~iRECLKld 253 (504)
T KOG0624|consen 242 SLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHHHccC
Confidence 888877777763
No 124
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.27 E-value=9.6e-05 Score=90.25 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 477 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP 477 (1349)
.+...|.-+...||...|...+.+|++. +|....++..--.+.+...+++.|..+|.+|... .
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~---------s 648 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------S 648 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------C
Confidence 4555666677778888888777777764 3445556666666777788888888888888763 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcC
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG 557 (1349)
.+..+|+.-+.+...+++.++|++++++||+.+ +..-..|..+|+++.++++.+.|...|...+.. .
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----c 715 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----C 715 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----C
Confidence 245678888888999999999999999999876 445677888999999999999999888777644 3
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccc
Q 000695 558 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 637 (1349)
Q Consensus 558 ~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl 637 (1349)
|..+-.+..+..|..... ..-.+.++....+ ..++..+.+|...-....+.|+.++|.....+||+-+++.
T Consensus 716 P~~ipLWllLakleEk~~-~~~rAR~ildrar--------lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDG-QLVRARSILDRAR--------LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred CCCchHHHHHHHHHHHhc-chhhHHHHHHHHH--------hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 555544444444432221 1222333322111 1123344556555566788999999999999999999887
Q ss_pred cCCC
Q 000695 638 YQDN 641 (1349)
Q Consensus 638 ~qn~ 641 (1349)
+--+
T Consensus 787 g~LW 790 (913)
T KOG0495|consen 787 GLLW 790 (913)
T ss_pred chhH
Confidence 6443
No 125
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00011 Score=81.38 Aligned_cols=191 Identities=15% Similarity=0.029 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+..+...+..|....+|++|..++.+|..-++.. ..--..+.+|-..|.+...+..+.++..+|++|..++.+..
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G- 105 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG- 105 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-
Confidence 345556666777888899999999999999877653 22234577899999999999999999999999999998753
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
.|+++..-..-|-=....-+.++|+.+|++++.+.+.- .........+..++.+|.+..+|++|-..+.+-.-+..
T Consensus 106 --spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 --SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred --CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 45555444444555567788999999999999998652 22233456778889999999999999988887766665
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 512 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 512 kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+.-. .......+..+-.+|+...||..|...++.+.++
T Consensus 182 ~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 182 KCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 5421 1223344544555667778999999999988766
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=7e-06 Score=72.71 Aligned_cols=96 Identities=36% Similarity=0.532 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 477 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP 477 (1349)
++..+|.++...|++++|+.++++++... +....++..+|.++...+++++|+.+|++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998762 2334778999999999999999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
....++..+|.++...|+++.|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 127
>PLN03077 Protein ECB2; Provisional
Probab=98.25 E-value=0.00012 Score=95.99 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
..+|+.|...|...|+.++|+++|++.... | -.|+ ..+|..+-..|...|++++|+.+|++..+.. |-
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi- 621 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY----SI- 621 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh----CC-
Confidence 456888888888999999999998887642 2 1222 2345556667888999999999998776432 11
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhh
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 597 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~ 597 (1349)
.| ....|..+..+|.+.|++++|.+++++.- ..+ +..++.++..- +...+..+.++.........+
T Consensus 622 ~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------~~p-d~~~~~aLl~a-c~~~~~~e~~e~~a~~l~~l~----- 687 (857)
T PLN03077 622 TP-NLKHYACVVDLLGRAGKLTEAYNFINKMP------ITP-DPAVWGALLNA-CRIHRHVELGELAAQHIFELD----- 687 (857)
T ss_pred CC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC------CCC-CHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhC-----
Confidence 12 23667888999999999999988876531 123 33333333322 112222333322221111111
Q ss_pred cCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 000695 598 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 598 k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALe 632 (1349)
+.....|..|+.+|...|++++|.+.++...+
T Consensus 688 ---p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 688 ---PNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred ---CCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 12334578889999999999999998866554
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.23 E-value=2.2e-05 Score=97.32 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=107.1
Q ss_pred CChHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 000695 349 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQA-TIYQQKALD 424 (1349)
Q Consensus 349 ~sss~A~~LlelG~~yl~qGd---yeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeA-le~~qKALe 424 (1349)
.....+..++..|..|+..++ +..|+.+|++|+++ +|..+.+|..|+.+|.....+... .....++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 455578888999999887766 77899999999977 788888888888888665333210 011122222
Q ss_pred HHHHhcC-CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000695 425 INERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 503 (1349)
Q Consensus 425 I~ErilG-~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~L 503 (1349)
..++... ...+....+|.-+|..+...|++++|..+|++|+.+. +. +.+|..+|.+|...|++++|+++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222111 1123345788889999999999999999999999862 33 578999999999999999999999
Q ss_pred HHHHHHH
Q 000695 504 HKALKCN 510 (1349)
Q Consensus 504 ekALei~ 510 (1349)
++|+.+.
T Consensus 477 ~~A~~L~ 483 (517)
T PRK10153 477 STAFNLR 483 (517)
T ss_pred HHHHhcC
Confidence 9999874
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.20 E-value=4.5e-05 Score=96.42 Aligned_cols=233 Identities=13% Similarity=0.008 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000695 368 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 447 (1349)
Q Consensus 368 GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~l 447 (1349)
.+...|+..|-+++.+ ++..+.++..||.+|+.-.|...|..+|++|.++ ++..+.+.-.++..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 3466777777777765 6778899999999999999999999999999887 45566777889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 527 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~n 527 (1349)
|....+++.|.....++-+..... .....+..+|..|...+++..|+..|+.|++.. |....++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a~------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPAF------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchHH------HHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHH
Confidence 999999999998855544432111 112334458999999999999999999999864 667789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc-hhhhhcCCCcHHHH
Q 000695 528 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD-ASIASKGHLSVSDL 606 (1349)
Q Consensus 528 LA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d-~~ia~k~h~svael 606 (1349)
||.+|...|+|..|+..|.+|..+ .|.|. .+....+.+....++..+++......+. ..........+++.
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L-----rP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL-----RPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc-----CcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999998754 34443 3333333344444444443332111111 01111223367788
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 607 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 607 L~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
+..++..+...|=+..|..+++++++.+--+.
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 88888888888999999999999998876655
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.19 E-value=0.0009 Score=83.67 Aligned_cols=184 Identities=19% Similarity=0.161 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHH
Q 000695 352 ADGRQLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDIN 426 (1349)
Q Consensus 352 s~A~~LlelG~~y-l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l----GdyeeAle~~qKALeI~ 426 (1349)
.+.-.++..+++| -..+.+++++.|..+++..+... .......+|..+|.+|..+ ....+=..+.+++++.+
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3333444445554 45688999999999999977443 3344567888888888664 33455566778888887
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 506 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekA 506 (1349)
++....+..+. .+.++||.-|..+++.+.|+.+.++++++- +. +.+.++..||.++...+++.+|+....-|
T Consensus 468 e~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~~---~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 468 EEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALN----RG---DSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----CC---ccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 77655444333 678899999999999999999999999862 22 23678889999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 507 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 507 Lei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
++-.... + ..+..-..+-...++.++|+..+..-+.+++.
T Consensus 540 l~E~~~N----~----~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~ 579 (799)
T KOG4162|consen 540 LEEFGDN----H----VLMDGKIHIELTFNDREEALDTCIHKLALWEA 579 (799)
T ss_pred HHHhhhh----h----hhchhhhhhhhhcccHHHHHHHHHHHHHHHHh
Confidence 8765322 1 11222233444578888888888777777774
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=1.2e-05 Score=71.17 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.++.+|..++..|++++|+.++.+++... +....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46778899999999999999999998762 2333688999999999999999999999998762 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
....++..+|.++...|+++.|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 23367899999999999999999999998764
No 132
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.16 E-value=2.4e-05 Score=79.25 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+++.+|.++..+|+.++|+.+|++|+.. |.+......++..+|..|..+|++++|+.++++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36788999999999999999999999884 66777778899999999999999999999999998632 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
+........+|.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23555666789999999999999999987764
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.00016 Score=81.55 Aligned_cols=177 Identities=10% Similarity=0.013 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
....++..|..++..|+|++|++.|++++... +..+....+...+|.+|..++++++|+.++++.++.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45667788999999999999999999998753 3456667778999999999999999999999999886 7
Q ss_pred CcHHHHHHHHHHHHHHHhcC---------------Ch---hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 000695 517 DHIQTAASYHAIAIALSLME---------------AY---PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 578 (1349)
Q Consensus 517 dhp~tA~a~~nLA~ay~~lG---------------dy---dEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~ 578 (1349)
+|+....+++.+|.++..++ |. .+|+..+++.++.+ |+.....++...|..+.....
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 88889999999998865443 12 23445555444443 667777777776665544332
Q ss_pred HHHHHH---HhccCCCc--------hhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHH
Q 000695 579 EQQEAA---RNGTRKPD--------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 628 (1349)
Q Consensus 579 eqAEAl---~~~a~a~d--------~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~ye 628 (1349)
+....+ +....... .-..-.+.....+++..+..+|..+|..++|..+..
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 222111 00111100 011123445677888888888888888888776553
No 134
>PLN03077 Protein ECB2; Provisional
Probab=98.14 E-value=0.00028 Score=92.58 Aligned_cols=120 Identities=8% Similarity=0.003 Sum_probs=67.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 567 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal 567 (1349)
.+|.+.|++++|...|++. .....+|..+...|...|+.++|+++|++..+ .-..++.......+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll 596 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLL 596 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHH
Confidence 4555556666655555442 01235677888889999999999998887553 22334443222211
Q ss_pred HHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 000695 568 AWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 630 (1349)
Q Consensus 568 ~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekA 630 (1349)
.. +...+..+.+..+...... ..+...-...|..+..+|.+.|++++|...+++.
T Consensus 597 ~a--~~~~g~v~ea~~~f~~M~~------~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 597 CA--CSRSGMVTQGLEYFHSMEE------KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HH--HhhcChHHHHHHHHHHHHH------HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 11 2222333333333221110 0001112356888999999999999999988763
No 135
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.4e-05 Score=90.73 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh-------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-------MTAGAYSLLAVVLYHTGDFNQATIYQQKALD 424 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp-------~~A~ay~~LA~ay~~lGdyeeAle~~qKALe 424 (1349)
..+....+.|..|+..|+|..|...|.+|+..+....+.+.. ....++.+||.||..+++|.+|+.++.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 456677888999999999999999999999887644332221 2345788999999999999999999999998
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHH
Q 000695 425 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH-VALRYL 503 (1349)
Q Consensus 425 I~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdyd-eAle~L 503 (1349)
+ .+....+++.-|.+|..+|+|+.|+..|++|+++ .|..-.+...|..+.....++. ...++|
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4567889999999999999999999999999986 2444455555655554443332 224444
Q ss_pred HHHHH
Q 000695 504 HKALK 508 (1349)
Q Consensus 504 ekALe 508 (1349)
...+.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 44443
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00048 Score=85.65 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=81.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHHhcCCCCchhH----------HHHHHHHHHHHHcCCHHHH
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD----INERELGLDHPDTM----------KSYGDLAVFYYRLQHTELA 457 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALe----I~ErilG~Dhpdta----------~ay~NLA~ly~~lGdyeeA 457 (1349)
....-..|++.|.-+...+|...|++||+|+-. +.+- +. +.|..+ ..|.-.|.++...|+.+.|
T Consensus 854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm-L~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM-LK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH-HH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 334566899999999999999999999998622 2111 11 112222 3455678999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCCCC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 458 LKYVKRALYLLHLT-----CGPSH--------PNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 458 Le~yerALel~e~l-----~G~dh--------P~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
+.+|..|-+.+..+ .|.-. .....+.+.||..|...|++.+|+.+|.+|-..
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999998765432 12110 111245667999999999999999998876543
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=1.2e-05 Score=71.77 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 000695 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 467 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lG-dyeeALe~yerALel 467 (1349)
.+.+|..+|.+++..|+|++|+.+|.+|+.+ +|....+++++|.+|..+| ++++|+.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999998 5777889999999999999 799999999999975
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.10 E-value=4.1e-05 Score=87.28 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=97.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 438 MKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 438 a~ay~NLA~ly-~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
....+..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|...|++++|+.+|++++..+ +
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 35567777765 56799999999999999863 4455667889999999999999999999999999876 6
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000695 517 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 570 (1349)
Q Consensus 517 dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~L 570 (1349)
+++....+++.+|.+|..+|++++|..+|+++++.+ |+......+...|
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL 260 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL 260 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence 788899999999999999999999999999888765 5555555554444
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.08 E-value=0.00078 Score=67.58 Aligned_cols=173 Identities=27% Similarity=0.278 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
.......+..+...+++..+...+..++.. .........+..++.++...+++..|+..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 344556677788889999999988888764 124556778888999999999988888888888765211
Q ss_pred CchhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 434 hpdta~ay~NLA~-ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
. .......+. ++...|+++.|..+|.+++... +........+..++..+...++++.|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 222333344 8899999999999999995521 101234556666777788899999999999999887632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
. ....+..++..+...+++..|+.++..++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 35667888999999999999999998888764
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00051 Score=76.82 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=115.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 000695 369 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 448 (1349)
Q Consensus 369 dyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly 448 (1349)
+-++-++++.+.+.....- ...++....|-.+..+....|+.+-|..++.+..+- + +.+ -+....-|..+
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----f-p~S---~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----F-PGS---KRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----C-CCC---hhHHHHHHHHH
Confidence 4555666666665544332 233456677888888888999999998888775443 2 223 34445568889
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000695 449 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 528 (1349)
Q Consensus 449 ~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nL 528 (1349)
...|+|++|+++|...+. ++|....++-.--.+...+|+--+|++.+.+-++.+ +....+|+.|
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eL 160 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHEL 160 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHH
Confidence 999999999999999886 446555566555556778888889999888888776 3345789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 000695 529 AIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 529 A~ay~~lGdydEAie~lekALeI 551 (1349)
+.+|...|+|++|.-+|++.+-+
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999999999999988844
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.00069 Score=79.67 Aligned_cols=176 Identities=19% Similarity=0.116 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+......|..-+..|+|.+|+.+..++-+. +..-..+|..-|.+...+||++.|-.|..+|-+..
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 34566667778888999999999999886533 33445567777888999999999999999987642
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-- 509 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei-- 509 (1349)
..++...+...+.++...|++..|..-..++++. ++.|+ ..+.-...+|...|+|...+.++.+.-+.
T Consensus 149 --~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~---~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 149 --GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHP---EVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred --CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 1235667888999999999999999999988875 34444 44555678889999998888776543321
Q ss_pred -----------------HHHhcC-CCcHH--------------HHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 510 -----------------NQRLLG-PDHIQ--------------TAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 510 -----------------~ekllG-~dhp~--------------tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
..+... .+... .......+|.-+...|++++|.+..++++.
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000000 00000 012223356667788999999998887774
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=1.7e-05 Score=70.92 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 509 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lG-dydeAle~LekALei 509 (1349)
.+..|.++|.+++..|+|++|+.+|.+++.+ +|....++.++|.+|..+| ++++|+.+|++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999996 4667889999999999999 799999999999986
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=2.4e-05 Score=73.15 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=66.4
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000695 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 445 (1349)
Q Consensus 366 ~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA 445 (1349)
++|+|+.|+.+|+++++... .++ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 46899999999999998742 122 455777799999999999999999998 4332 23466677889
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000695 446 VFYYRLQHTELALKYVKRA 464 (1349)
Q Consensus 446 ~ly~~lGdyeeALe~yerA 464 (1349)
.+++.+|+|++|+++|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 144
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.3e-05 Score=89.91 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpd-------ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
....-|..|+..|+|..|...|++|+..+....+.+..+ ...+++|||.||..+++|.+|+.++.++|.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 445568899999999999999999999887554443222 2457899999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 471 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 471 l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+....+++.-|.+|..+|+|+.|+..|++|+++.
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 35567889999999999999999999999999885
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.03 E-value=6.4e-05 Score=76.14 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
.+.+++|.++-.+|+.++|+.+|++++.. |.+.+....++..+|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35789999999999999999999999983 55566677899999999999999999999999987643 332
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
.........+|.++..+|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445556688999999999999998877663
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=7.9e-05 Score=85.00 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 397 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 397 ~ay~~LA~ay-~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
...+..|..+ +..|+|++|+..|++.+..+ +++.....+++.||.+|+..|+|++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4455566654 56799999999999999874 4566667899999999999999999999999999864 57
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
|+....++..+|.+|..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999998765
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00012 Score=84.25 Aligned_cols=162 Identities=17% Similarity=0.110 Sum_probs=109.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000695 364 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 443 (1349)
Q Consensus 364 yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~N 443 (1349)
++...+|.-|+.+++-.+.+- ..+-...-.++|.||+++|+|++|+..|.-+.. .++ --+....+
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~-~~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDD-APAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCC-CCcccchh
Confidence 346779999999888776442 223345667899999999999999999876654 122 23567789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----------HHHHhcCCC------C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000695 444 LAVFYYRLQHTELALKYVKRALY----------LLHLTCGPS------H---PNTAATYINVAMMEEGLGNVHVALRYLH 504 (1349)
Q Consensus 444 LA~ly~~lGdyeeALe~yerALe----------l~e~l~G~d------h---P~~a~al~NLA~iy~~lGdydeAle~Le 504 (1349)
||.|++.+|.|.+|.....+|-+ +..+ ++.. | .++..-...||.+...+-.|++|++.|.
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987765522 1111 1110 1 1122334456777777777888888887
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 505 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 505 kALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
++|.-. +.....-.++|.+|..+.-|+-+.+.+.--+
T Consensus 176 rvL~dn--------~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 176 RVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 777543 4444555668999999988887776655433
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0033 Score=70.59 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 359 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 359 elG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
....+.+..|+.+.|..++.+....+ |..-++...-|+.+...|.+++|+++|...|. . +|...
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-------d-dpt~~ 120 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-------D-DPTDT 120 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-------c-Ccchh
Confidence 33456678899999998888765442 23334556668888888999999988887664 2 34444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
.++-.--.+...+|+.-+|++.+..-++.+ +....++..|+.+|...|+|++|.-||++.+=+.
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------- 184 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------- 184 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------
Confidence 445444456678899889998888877764 2335789999999999999999999999988653
Q ss_pred HHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lG---dydEAie~lekALeI~ 552 (1349)
|....++..+|.+++-+| ++.-|..||.+|+++.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 334455667777777655 5677999999999874
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.98 E-value=0.0033 Score=80.32 Aligned_cols=218 Identities=14% Similarity=0.078 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
..|.++|.++....+++.|...+.++..+ .|.....+...|.+....|+.-+++..+...-++.....+ -
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk--a 920 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK--A 920 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc--c
Confidence 34555555555556666655555555443 3556666777777777777777777777775554322211 1
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKC--NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei--~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
+ -...+.+--.+....|++++.+...+++-.. ....+=..+++...+|...|..+..++.|++|.+.+.+.+.++..
T Consensus 921 ~-~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~ 999 (1238)
T KOG1127|consen 921 K-KFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL 999 (1238)
T ss_pred c-hhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233444555666777777766665544221 122222457888899999999999999999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHh
Q 000695 555 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 555 ~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~ 634 (1349)
.+..+...++.......++..+.++.+..... ... ..+.+-..........+|+|+++.+.|++|+.|.
T Consensus 1000 k~d~sqynvak~~~gRL~lslgefe~A~~a~~--~~~---------~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 1000 KLDESQYNVAKPDAGRLELSLGEFESAKKASW--KEW---------MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred HHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc--ccc---------hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhc
Confidence 88765444333322222333333332221111 100 0122222222222355899999999999999986
Q ss_pred cc
Q 000695 635 GN 636 (1349)
Q Consensus 635 ~k 636 (1349)
.+
T Consensus 1069 ~s 1070 (1238)
T KOG1127|consen 1069 NS 1070 (1238)
T ss_pred cc
Confidence 64
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=3.9e-05 Score=71.72 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=65.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000695 450 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 529 (1349)
Q Consensus 450 ~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA 529 (1349)
.+|+|+.|+.++++++..... .+ ....+..+|.+|...|+|++|+.++++ +... +....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999986421 12 455677799999999999999999998 4443 22456677789
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 000695 530 IALSLMEAYPLSVQHEQTT 548 (1349)
Q Consensus 530 ~ay~~lGdydEAie~lekA 548 (1349)
.++..+|+|++|+.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.0053 Score=76.42 Aligned_cols=146 Identities=16% Similarity=0.026 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
..+++.||..|...|++++|+.+..+||.. .|.....|+..|.+|...|++.+|.++++.|..+-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD------- 258 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD------- 258 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-------
Confidence 567899999999999999999999999986 57788999999999999999999999999998752
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH---IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh---p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
..--.+-...+..+.+.|+.++|...+..-.+--. .+... .+........|.+|.++|++..|+..|.....+|
T Consensus 259 -~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 259 -LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred -hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122334566777889999999887643221100 01111 1233444567999999999999999999999999
Q ss_pred HHhcCCC
Q 000695 553 RAKLGPD 559 (1349)
Q Consensus 553 kk~LG~d 559 (1349)
.......
T Consensus 336 ~~~~~DQ 342 (517)
T PF12569_consen 336 DDFEEDQ 342 (517)
T ss_pred HHHhccc
Confidence 8875443
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00012 Score=82.78 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=120.9
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 444 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NL 444 (1349)
+...+|.+|++++.--. ...+.....+..||.||++..+|..|..+|.+...+ +|....-...-
T Consensus 21 I~d~ry~DaI~~l~s~~--------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHH--------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 45567888887765433 346667778999999999999999999999987655 56676666677
Q ss_pred HHHHHHcCCHHHHHHHHHHH----------HHHHHHh-cCC-C------------ChhHHHHHHHHHHHHHHCCCHHHHH
Q 000695 445 AVFYYRLQHTELALKYVKRA----------LYLLHLT-CGP-S------------HPNTAATYINVAMMEEGLGNVHVAL 500 (1349)
Q Consensus 445 A~ly~~lGdyeeALe~yerA----------Lel~e~l-~G~-d------------hP~~a~al~NLA~iy~~lGdydeAl 500 (1349)
|..++..+.+..|+...... +.+...+ +.. + ....+.+.++.|.++.+-|+|++|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 88888888888888655433 2221111 000 0 1245778899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 501 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 501 e~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+-|+.|++.. |- .+ ...+++|.++.+.++++.|+.+..+.++.
T Consensus 165 qkFqaAlqvs----Gy-qp---llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 165 QKFQAALQVS----GY-QP---LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHhhc----CC-Cc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999874 22 22 34578999999999999999998776653
No 153
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=7.2e-05 Score=92.59 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=137.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 439 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ 439 (1349)
++..++..|-..+|+..|++.- .+.....||...|+..+|....++-++ .+....
T Consensus 404 laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d~~ 458 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------KDPDPR 458 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------CCCcch
Confidence 4555666676666666655432 344556677777777777766655443 123345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp 519 (1349)
.|..||.+... ..+|++|.++.... .+.+...+|......++|.+|.++|+.++++. +
T Consensus 459 lyc~LGDv~~d-------~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------p 516 (777)
T KOG1128|consen 459 LYCLLGDVLHD-------PSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------P 516 (777)
T ss_pred hHHHhhhhccC-------hHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------c
Confidence 55555555444 44555555554332 23344556666667899999999999999885 4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcC
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 599 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~ 599 (1349)
....+|+.+|.+..++++++.|.++|..++.+ .++|. .+..+|...+.......++......+.. ....
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~---eaWnNls~ayi~~~~k~ra~~~l~EAlK---cn~~ 585 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNA---EAWNNLSTAYIRLKKKKRAFRKLKEALK---CNYQ 585 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCch---hhhhhhhHHHHHHhhhHHHHHHHHHHhh---cCCC
Confidence 45678899999999999999999999988854 56664 4555555444444444444433221111 0011
Q ss_pred CCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhccc
Q 000695 600 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 637 (1349)
Q Consensus 600 h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl 637 (1349)
|. .++.+.-.+....|++++|+..|.+-+.+....
T Consensus 586 ~w---~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 586 HW---QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred CC---eeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 22 235555556678999999999999999887763
No 154
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0018 Score=77.53 Aligned_cols=250 Identities=13% Similarity=-0.027 Sum_probs=162.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCC--Ch----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCCch
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPY--HR----MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHPD 436 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~d--hp----~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG--~Dhpd 436 (1349)
+..|-|++|..+-.+++...++.-..+ .+ .....+.++..|-.-+|++.+|++-...+.+.+.+.-+ .-...
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 456778889999888888766652221 11 11234667888888899999999999999999888644 22233
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
.+.+.+.+|.....-+.|+.|+..|..|+...... ...+.+-.|+|..|.+.|+-+.-. ++++.. |+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p 432 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GP 432 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CC
Confidence 67778889999999999999999999999875432 224566778999999987754432 333332 33
Q ss_pred C-------cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Q 000695 517 D-------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 589 (1349)
Q Consensus 517 d-------hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~ 589 (1349)
. +...+.+++..|...+.++++.||..++++.+++... ......+...+..|..+..-.+...++..--..
T Consensus 433 ~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 433 LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 3 1234667777888888999999999999999988621 112233444444555444433333333222221
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHCCC--hHHHHHHHHH
Q 000695 590 KPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 629 (1349)
Q Consensus 590 a~d~~ia~k~h~svaelL~~Lg~iy~aqGd--yEEAle~yek 629 (1349)
..+......+++-.....-.+-.+|.+.|+ .+.+.+.|+.
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 222112222333344445566778888888 6777777665
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00021 Score=88.71 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHH--------HHHHHHHHH
Q 000695 396 AGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRA 464 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGd---yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdye--------eALe~yerA 464 (1349)
+.-++..|.-|...++ +..|+.+|++|+++ +|+.+.+|..||.+|.....+. .|.+.+.++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3344555666655544 77899999999987 6888888888888886654332 223333332
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHH
Q 000695 465 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 544 (1349)
Q Consensus 465 Lel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~ 544 (1349)
+.+ ...+....++.-+|.++...|++++|..+|++|+++. + .+.+|..+|.+|...|++++|+++
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 1123334678888999999999999999999999885 2 357899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 000695 545 EQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 545 lekALeI~kk~LG~dhp~ 562 (1349)
|++|+.+ .+.++.
T Consensus 476 ~~~A~~L-----~P~~pt 488 (517)
T PRK10153 476 YSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHhc-----CCCCch
Confidence 9999865 677774
No 156
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.88 E-value=0.00058 Score=83.96 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
++.+-..|..+...|+-++|..+.+.++.. ++....||+-+|.++....+|++|+.+|+.|+.+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-------- 104 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-------- 104 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------
Confidence 445556678888999999999999988853 4555679999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
.++...++..|+.+...+++|+.....-.+.+++. |..-..|..+|..+...|++..|...++.-.......
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46678899999999999999998887777777643 4455778889999999999999999988877665432
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 548 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekA 548 (1349)
..........+......++...|.+++|++++.+-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 22223334455556677788889988888877643
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=97.87 E-value=0.00058 Score=82.29 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc---C------CHHHHHHHHHHHH
Q 000695 356 QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G------DFNQATIYQQKAL 423 (1349)
Q Consensus 356 ~LlelG~~yl~qGd---yeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l---G------dyeeAle~~qKAL 423 (1349)
.++..|+..+.++. .+.|+.+|.+|+... ..+|..+.+|..+|.|++.. | +..+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66777877776664 456778888887331 34788999999999999765 2 2345666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000695 424 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 503 (1349)
Q Consensus 424 eI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~L 503 (1349)
++ ++..+.++..+|.++...++++.|+..|++|+.+ .|..+.+++..|.++...|+.++|++.+
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 3556788999999999999999999999999985 5788999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 504 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 504 ekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
++|+++. +. ..+.....+-.-.+.-...++|+.+|-
T Consensus 396 ~~alrLs-----P~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLE-----PR--RRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHhccC-----ch--hhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 9999875 21 122233334331233455677776653
No 158
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.00086 Score=80.62 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
+....+.+..|..++..|++++|+..++..+.. .|+....+...+.++...++..+|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 355668899999999999999999999985543 4666677778899999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.|.......++|.+|...|++.+|+..++..+.-. +.....|..||++|..+|+..+|...+.+.+.+
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 35556678899999999999999999998876542 445677888999999999999998877666643
No 159
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.79 E-value=0.014 Score=72.14 Aligned_cols=268 Identities=10% Similarity=-0.024 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh------h---------------C------CCChhhHHHHHH-
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV------C---------------G------PYHRMTAGAYSL- 401 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqv------l---------------G------~dhp~~A~ay~~- 401 (1349)
....+..+..+|..|+..|.|+.|...|.+++.....+ + + .+..+....-..
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 34456778888999999999999999999998642211 0 0 000000000000
Q ss_pred -----------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC
Q 000695 402 -----------------------------LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ 452 (1349)
Q Consensus 402 -----------------------------LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lG 452 (1349)
+-++-...|+..+-+..|..|+.-..-... .-.....+..+|.+|...|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcC
Confidence 111112233444445555555443211011 1123456788999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HhcCCCcHHHH------
Q 000695 453 HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ----RLLGPDHIQTA------ 522 (1349)
Q Consensus 453 dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e----kllG~dhp~tA------ 522 (1349)
+.+.|...|++|+..--. .-.+.+.+|.+-|.+.....+++.|+.++++|...-. ..+...++..+
T Consensus 402 ~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred cHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999999999999875211 1234688999999999999999999999999986532 22233333222
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCc
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 602 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~s 602 (1349)
.+|..++.+....|-++.-...|.+.+++. -..|... .+.+.+........++.....+.+... ..+.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLr-----iaTPqii---~NyAmfLEeh~yfeesFk~YErgI~LF----k~p~ 545 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLR-----IATPQII---INYAMFLEEHKYFEESFKAYERGISLF----KWPN 545 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHh-----cCCHHHH---HHHHHHHHhhHHHHHHHHHHHcCCccC----CCcc
Confidence 334445555555666666556666655543 1233333 333444444444444443333322211 1234
Q ss_pred HHHHHHHH-HHH--HHHCCChHHHHHHHHHHHHHhc
Q 000695 603 VSDLLDYI-NPS--HDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 603 vaelL~~L-g~i--y~aqGdyEEAle~yekALeL~~ 635 (1349)
+-++|... -.. -+..-..+.|...|++||+.++
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 44444322 111 2335577888999999988765
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.78 E-value=0.00071 Score=69.08 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 477 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP 477 (1349)
.+..-|.++.+.|+.+.|++.|.+||.++ |..+.+|+|-|..|.-+|+.++|++-+.+|+++. |....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34556778888999999999999999985 6678999999999999999999999999999975 44455
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
....++...|.+|..+|+-+.|..-|+.|-++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 56788999999999999999999999998775
No 161
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.73 E-value=0.023 Score=72.79 Aligned_cols=262 Identities=13% Similarity=-0.037 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-hCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqv-lG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.+..+.....+.+|.+|..++.++......- .+......+.....-|.+....|++++|+++.+.++...-. ....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~ 494 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYR 494 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccch
Confidence 3445667778899999999998887664431 01122334556667788899999999999999999886422 1222
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
.-+.++..+|.+..-.|++++|+.+.+++.++.+..- .....+.+....+.++..+|+. |..-.+++.........
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~--~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQV--ARAEQEKAFNLIREQHL 570 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999877642 1223345566778999999943 33323333322222222
Q ss_pred CC---cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCc
Q 000695 516 PD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 592 (1349)
Q Consensus 516 ~d---hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d 592 (1349)
.. |.....++..+..+|.+ ++.+..-....+.+........+. ...+...|+.+.-..++.+++.........
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22 22233444444444443 666666666666654333222211 111223455554444444444332111111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHH-HHCCChHHHHHHHHH
Q 000695 593 ASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTY 629 (1349)
Q Consensus 593 ~~ia~k~h~svaelL~~Lg~iy-~aqGdyEEAle~yek 629 (1349)
.......|..+.-..+.+..+| ..+|++++|.....+
T Consensus 647 l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 647 LLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1111223444444445555555 678999988776655
No 162
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0023 Score=76.61 Aligned_cols=204 Identities=17% Similarity=0.080 Sum_probs=150.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC--CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~--dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
-....+-+-.|++.+|++....+...+.+.-++ -....+...+.+|......+.|+.|...|..|....+.. .
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----d 401 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----D 401 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----H
Confidence 334455567899999999999999888776432 223456778889998899999999999999999876442 1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d-------hP~~a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
-.+.+-.|||..|.+.|+-+. +.++++.. |+. +...+.+++-.|...+.++++.+|..++.+.|+
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed----~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAED----LYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHH----HHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 245566789999999887543 33444432 333 223466777888888999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 000695 509 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 578 (1349)
Q Consensus 509 i~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~ 578 (1349)
+... . .....++-.+..|+.+....|+..++....+-++++.++. +|++-.......+..+++..+
T Consensus 474 mana-e-d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g 539 (629)
T KOG2300|consen 474 MANA-E-DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALG 539 (629)
T ss_pred hcch-h-hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhC
Confidence 8722 1 1233466777889999999999999999999999998876 567766666666655554443
No 163
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.71 E-value=0.078 Score=65.90 Aligned_cols=184 Identities=17% Similarity=0.070 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER---- 428 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er---- 428 (1349)
....+...|..|-..|+++.|...|++|+..-- ..-.+.+.+|..-|..-+...+++.|+.+.++|+.+-..
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 456678889999999999999999999986521 123456888888888888899999999999999765221
Q ss_pred hcCCCCchh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000695 429 ELGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 502 (1349)
Q Consensus 429 ilG~Dhpdt------a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~ 502 (1349)
.+...+|-. ..++..++.+....|-++.....|.+.+++... +...-.|.|+.+....-+++|.+.
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--------TPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--------TPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhHHHHHHHHH
Confidence 122223322 345666788888888888888899998887432 234567888888888888999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 503 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 503 LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
|++.+.++. -+.-.+....|......-..--..+.|..+|++|++.
T Consensus 534 YErgI~LFk---~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 534 YERGISLFK---WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHcCCccCC---CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 988887752 1222334444443333333344667788888888764
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.68 E-value=0.011 Score=59.20 Aligned_cols=229 Identities=22% Similarity=0.204 Sum_probs=150.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000695 368 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 447 (1349)
Q Consensus 368 GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~l 447 (1349)
+.+..+...+..++.... .......+..++..+...+++..+...+..++.. ...+.....+..++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 104 (291)
T COG0457 37 GELAEALELLEEALELLP------NSDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLL 104 (291)
T ss_pred hhHHHHHHHHHHHHhcCc------cccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHH
Confidence 455555565555554321 1124567888999999999999999999998864 1235567888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 526 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~-iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~ 526 (1349)
+...+++..|+..+..++..... . .......+. ++...|+++.|..+|.+++... +........+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~ 171 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALL 171 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHH
Confidence 99999999999999998874211 1 122223344 8999999999999999996522 10123455566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH--HHHHHHHhccCCCchhhhhcCCCcHH
Q 000695 527 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF--EQQEAARNGTRKPDASIASKGHLSVS 604 (1349)
Q Consensus 527 nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~--eqAEAl~~~a~a~d~~ia~k~h~sva 604 (1349)
.++..+...++++.|+..+.+++...... .......+........ ..+............ ...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~ 236 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------DNA 236 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------ccH
Confidence 67777889999999999999998775332 1122223322222222 222222211111110 133
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 605 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 605 elL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
..+..++..+...+++++|...+.++++....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 45666777777788899999999999887765
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.68 E-value=0.00041 Score=80.34 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=116.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 436 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpd 436 (1349)
.+-.|.+++..|++++|++++.+. ....+...+..+|..+++++.|...++.+-++ .. +
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D 163 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DE---D 163 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SC---C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---c
Confidence 344567788889999988877542 23456677888999999999999888776433 22 2
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000695 437 TMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 514 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lG--dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekll 514 (1349)
...+..-.|++.+..| .+.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+...
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---- 231 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---- 231 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----
Confidence 3344444555666666 58888888887543 223456778999999999999999999999987532
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdydE-Aie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
+....++.|++.+...+|+..+ +.+++.+... ..++|+.+.....
T Consensus 232 ----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~ 277 (290)
T PF04733_consen 232 ----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAE 277 (290)
T ss_dssp ----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHH
Confidence 3345678899999999999954 4455544332 2588887655443
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00015 Score=64.17 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+.+|..++..|+|++|+.+|++++. .+|....++..+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3689999999999999999999997 468889999999999999999999999999999864
No 167
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.65 E-value=0.0016 Score=66.50 Aligned_cols=102 Identities=24% Similarity=0.220 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
.+.|-..|..+...|+++.|++.|.+++.+ -|..+.+|++.|.+|..+|+.++|++-+.+|+++. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 344555677788899999999999999987 36678899999999999999999999999999984 555
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
....+.+|..-|.+|..+|+.+.|..-|..|-.+
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5567889999999999999999999999999875
No 168
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.64 E-value=0.026 Score=66.93 Aligned_cols=241 Identities=15% Similarity=0.076 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
-.++.-+...-+.|+++.|-.|+.++-+.. ...+...+...+.+...+||+..|..-..+++.+ .
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~ 183 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM--------T 183 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------C
Confidence 345556778889999999999999887652 2234557778899999999999999999998887 3
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcCC-C----------Chh----HH
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALY-------------------LLHLTCGP-S----------HPN----TA 480 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALe-------------------l~e~l~G~-d----------hP~----~a 480 (1349)
|.....+.....+|...|+|...+.++.+.-+ +.+..... + -|. ..
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 44456666778899999999888876654432 00110000 0 000 02
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCC
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 560 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dh 560 (1349)
.+...++.-+..+|++++|.+..+++|+... ++. .+..++ ...-++...=++..++.+.. .+++
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~------D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~-----h~~~ 327 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQW------DPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ-----HPED 327 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhcc------Chh---HHHHHh--hcCCCCchHHHHHHHHHHHh-----CCCC
Confidence 2334567778899999999999999987641 111 111122 12446666655555555533 3566
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 561 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 561 p~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
|....++..|++-.+ ....|+.....+.... .-+..+..+|.++.++|+.++|.+.++.++.+...
T Consensus 328 p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 328 PLLLSTLGRLALKNK-LWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 655444444433222 2222222222111111 23345889999999999999999999999976654
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.63 E-value=0.0074 Score=68.19 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+..|++.|...++.|+|++|+..|+...... +..+..-.+...++.+++..++|++|+.+..+-+.++ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 5678999999999999999999998776431 4456667889999999999999999999999988774 66
Q ss_pred CchhHHHHHHHHHHHHHcCC-----HH---HHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQH-----TE---LALKYVKRALYLLHLTCGPSHPN--------------TAATYINVAMMEE 491 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGd-----ye---eALe~yerALel~e~l~G~dhP~--------------~a~al~NLA~iy~ 491 (1349)
|++...+++..|.+++..-+ .. +|..-|+..+..+ ++.+. .+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999998888775432 22 3333333333321 12111 1222345788999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHH
Q 000695 492 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 544 (1349)
Q Consensus 492 ~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~ 544 (1349)
+.|.|-.|+..++++++-. ++...+-.++..|..+|..+|-.++|...
T Consensus 179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999999998875 33355667788899999999999998764
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.62 E-value=0.00081 Score=80.84 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000695 402 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 481 (1349)
Q Consensus 402 LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~ 481 (1349)
|-.++...++++.|+.++++.... +|+ ....||.++...++..+|++++++++. ..|..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHH
Confidence 344555678888888888775442 344 345589999999999999999999995 3455588
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
.+...|..+...++++.|+.+.++|..+. |....+|+.||.+|..+|+|++|+..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88899999999999999999999999886 6667889999999999999999997665
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00036 Score=79.03 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~ 432 (1349)
.+..+|+.|..++..|+|.+|...|..-+..+ +.......++++||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 45558999999999999999999999887663 6788899999999999999999999999999988743 6
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
+++....+++.||.+..++|+.++|...|++++.-+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 788888999999999999999999999999998753
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0041 Score=77.83 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhcCCCChhH----------HHHHHHHHHHHHHCCCHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL----YLLHLTCGPSHPNT----------AATYINVAMMEEGLGNVHV 498 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerAL----el~e~l~G~dhP~~----------a~al~NLA~iy~~lGdyde 498 (1349)
|....-.+|++.|..+...++.+.|++||+++- ++.+.+. +.|.. -..|...|..+...|+.+.
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 344466789999999999999999999999853 3322221 12222 1345567888889999999
Q ss_pred HHHHHHHHHHHHHHh-----cCCCcH--------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 499 ALRYLHKALKCNQRL-----LGPDHI--------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 499 Ale~LekALei~ekl-----lG~dhp--------~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
|+.+|..|-+.+... .|.-.. ....+.|.||+.|...|++.+|+.+|.+|-.+
T Consensus 931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999887765321 122111 11245678999999999999999999887544
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00029 Score=62.43 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
+.+|..++..|++++|+.+|++++. .+|....++..+|.+++.+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999984 46889999999999999999999999999999986
No 174
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.61 E-value=0.0034 Score=82.39 Aligned_cols=189 Identities=15% Similarity=0.036 Sum_probs=136.4
Q ss_pred CchHHHHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC
Q 000695 331 PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG 410 (1349)
Q Consensus 331 ~F~~eDIl~LvPvvK~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG 410 (1349)
+-..+|+..++-.++. .+-.++..-..+++.++.++|...+++||....-.-+.....++.+|.+|-..| |
T Consensus 1441 pesaeDferlvrssPN------SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPN------SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---G 1511 (1710)
T ss_pred CcCHHHHHHHHhcCCC------cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---C
Confidence 4456666555433322 222233333456788999999999999997641111122334555666666655 4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000695 411 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 490 (1349)
Q Consensus 411 dyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy 490 (1349)
.-+.-.+.|++|.+.+. ....|..|.-+|..-+.+++|.++|++.++-+. .....|..+|..+
T Consensus 1512 ~eesl~kVFeRAcqycd---------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQYCD---------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFL 1574 (1710)
T ss_pred cHHHHHHHHHHHHHhcc---------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHH
Confidence 55667778888888752 346788999999999999999999999988664 2457788899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 491 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 491 ~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+.+.+-++|...+.+||....+ ..| .......|++.+..|+-+.+..+|+-.+..
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk---~eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPK---QEH---VEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcch---hhh---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 9999999999999999998743 123 455667899999999999998888877654
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.57 E-value=0.00026 Score=85.14 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
..|+....++|+|.+|+.+|+|++|+.+|++||++ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999997 3445444467999999999999999999999999997
No 176
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.56 E-value=0.0095 Score=73.63 Aligned_cols=282 Identities=17% Similarity=0.114 Sum_probs=146.3
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 000695 346 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 419 (1349)
Q Consensus 346 ~s~~sss~A~~LlelG~~yl~qGdyeEAlel~ee------ALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~ 419 (1349)
|+....-.+..+-..|.+|-...++++|+++|++ |+++.+-.+ ...+...-..-|.-+...|+++.|+.+|
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 3333333344444556667777788889888764 444443222 1223333344566667778888888776
Q ss_pred HHHHHHHH---HhcCC-------------CCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHH------HH----------
Q 000695 420 QKALDINE---RELGL-------------DHPDT-MKSYGDLAVFYYRLQHTELALKYVKRA------LY---------- 466 (1349)
Q Consensus 420 qKALeI~E---rilG~-------------Dhpdt-a~ay~NLA~ly~~lGdyeeALe~yerA------Le---------- 466 (1349)
-.|-.+.. ...|. .+..+ ...|..+|.-|...|+|+.|+++|.++ +.
T Consensus 730 iea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 730 IEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHH
Confidence 55422211 11111 01111 223445677778888888888776443 32
Q ss_pred ---HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHh---------cCCCcHH-HHHHHHH
Q 000695 467 ---LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRL---------LGPDHIQ-TAASYHA 527 (1349)
Q Consensus 467 ---l~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~L------ekALei~ekl---------lG~dhp~-tA~a~~n 527 (1349)
+.....|+ ..+...|...|.-+...|+|.+|.++| .+|+.++.+. .+..|+. ...++..
T Consensus 810 a~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 810 AFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 22333332 235566777777778888888887776 4556555432 1111221 2345566
Q ss_pred HHHHHHhcCChhHHHHHHHHH-------------------HHHHHHhcCCCCHHHHHHHHHHHH--------HHHHhHHH
Q 000695 528 IAIALSLMEAYPLSVQHEQTT-------------------LQILRAKLGPDDLRTQDAAAWLEY--------FESKAFEQ 580 (1349)
Q Consensus 528 LA~ay~~lGdydEAie~lekA-------------------LeI~kk~LG~dhp~T~eal~~La~--------L~qk~~eq 580 (1349)
+|.-|...|++.+|..+|.+| +++.+...|.+-. ...+..|-.. +..+.+-.
T Consensus 888 f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~-k~v~flwaksiggdaavkllnk~gll 966 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAE-KHVAFLWAKSIGGDAAVKLLNKHGLL 966 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHH-HHHHHHHHHhhCcHHHHHHHHhhhhH
Confidence 777777777777777666543 4444434343321 1112222211 11111111
Q ss_pred HHHHH----hccCCC--c-hhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 581 QEAAR----NGTRKP--D-ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 581 AEAl~----~~a~a~--d-~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
..++. .+.-.. + ..+..+ ....+.+..++..+...|++++|-++|-.|+++..
T Consensus 967 ~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 967 EAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 11111 000000 0 011111 12234566677778889999999999999998854
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.56 E-value=0.0039 Score=68.57 Aligned_cols=205 Identities=12% Similarity=0.026 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
+.+.+..++..|..|-..|-..-|.--|.+++.+ .|....+++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4456777888889999999999999999999988 4788999999999999999999999999999885
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH-HHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ-TTLQ 550 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le-kALe 550 (1349)
+|..-.+..|.|..+.--|+|..|.+-+.+-.+. .+.+|..+.-+ .| -...-+..+|...+. ++..
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWL-Yl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWL-YL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHH-HH---HHhhCCHHHHHHHHHHHHHh
Confidence 4566677888999999999999998877554332 23444322111 11 112334555554332 2221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 000695 551 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 630 (1349)
Q Consensus 551 I~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekA 630 (1349)
. ..+.--+.....+|+.+..+..- +++...+. +...... .+.+.+.+||..|...|+..+|...|+.|
T Consensus 196 ~-----d~e~WG~~iV~~yLgkiS~e~l~--~~~~a~a~--~n~~~Ae---~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 196 S-----DKEQWGWNIVEFYLGKISEETLM--ERLKADAT--DNTSLAE---HLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred c-----cHhhhhHHHHHHHHhhccHHHHH--HHHHhhcc--chHHHHH---HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 11111222223333333221111 11111111 1111122 46788999999999999999999999988
Q ss_pred HHH
Q 000695 631 AKV 633 (1349)
Q Consensus 631 LeL 633 (1349)
+.-
T Consensus 264 ian 266 (297)
T COG4785 264 VAN 266 (297)
T ss_pred HHH
Confidence 764
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.0013 Score=79.10 Aligned_cols=117 Identities=24% Similarity=0.202 Sum_probs=97.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 441 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay 441 (1349)
..+...++++.|+.++++..+. +|+ +...||.+|...++..+|+.++.+++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3344567889998888876533 344 4556899999999999999999999953 35557888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 505 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek 505 (1349)
...|.++...++++.|+.+.++|..+ .|....+|..||.+|..+|+|+.|+..+..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 89999999999999999999999986 477788999999999999999999987763
No 179
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0034 Score=72.75 Aligned_cols=134 Identities=24% Similarity=0.192 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHH-------
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI--NER------- 428 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI--~Er------- 428 (1349)
+.+|.+++..|+|++|+..|.-+... +.-.+....+||.+++.+|.|.+|.....+|-.. +.|
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 44688999999999999999876542 2233567789999999999999999887665210 000
Q ss_pred hcCCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000695 429 ELGLD---------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 499 (1349)
Q Consensus 429 ilG~D---------hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeA 499 (1349)
.++.. --++..-...||.+.+..-.|++|++.|++.|. +.+.....-.++|.+|.++.-|+.+
T Consensus 133 klndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH
Confidence 01110 112334455677888888888888888888876 5677777888899999999999988
Q ss_pred HHHHHHHH
Q 000695 500 LRYLHKAL 507 (1349)
Q Consensus 500 le~LekAL 507 (1349)
.+.+.--|
T Consensus 205 qevl~vYL 212 (557)
T KOG3785|consen 205 QEVLKVYL 212 (557)
T ss_pred HHHHHHHH
Confidence 77665444
No 180
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.52 E-value=0.014 Score=67.21 Aligned_cols=141 Identities=21% Similarity=0.184 Sum_probs=97.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCCch----
Q 000695 364 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERE--LGLDHPD---- 436 (1349)
Q Consensus 364 yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG-dyeeAle~~qKALeI~Eri--lG~Dhpd---- 436 (1349)
...+|+++.|..++.++-.+............+..++++|.-.+..+ +++.|..++++|+++++.. ....+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877642222233456888999999999999 9999999999999998652 1223333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
...++..|+.+|...+.++...+ ..+++.....-+| +++.... ..+-.+. ..++.+++.+.+.+.+.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l~il~-~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKLEILL-KSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHHHHHh-ccCChhHHHHHHHHHHHh
Confidence 35678889999999998865544 4455555555443 3444322 2222222 278888888888877764
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=97.51 E-value=0.00066 Score=72.09 Aligned_cols=102 Identities=12% Similarity=-0.032 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000695 349 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 349 ~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er 428 (1349)
........++..|..++.+|++++|..+|+-.... ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34556788899999999999999999999765532 34446678999999999999999999999998763
Q ss_pred hcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 429 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 429 ilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
.++| ...+.+|.||+.+|+.+.|+.+|..++.
T Consensus 102 ---~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 ---KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333 3478899999999999999999999987
No 182
>PRK11906 transcriptional regulator; Provisional
Probab=97.49 E-value=0.0017 Score=78.44 Aligned_cols=162 Identities=11% Similarity=0.005 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHH
Q 000695 399 YSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q------HTELALKYVKRALY 466 (1349)
Q Consensus 399 y~~LA~ay~~lGd---yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~l---G------dyeeALe~yerALe 466 (1349)
++..|...+..+. ...|+.+|.+|+... .-+|+.+.+|..+|.|++.. | ...+|+++.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 3556665555443 456777788887321 22688899999999998765 1 23566677777776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 467 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 467 l~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
+ .+..+.++..+|.++...++++.|+..|++|+.+. |..+.+++..|.++...|+.++|.++++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 34456788899999999999999999999999885 6678999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 000695 547 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 586 (1349)
Q Consensus 547 kALeI~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~ 586 (1349)
+|+++ .|..........|+..++..-.+.+-+++.
T Consensus 397 ~alrL-----sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQL-----EPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHhcc-----CchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 99965 344344444455663333333344444443
No 183
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0095 Score=66.29 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000695 368 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 447 (1349)
Q Consensus 368 GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~l 447 (1349)
++|++|.++|.+|-.+ |....++..|=..|.+|-++..+. | +..+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHH
Confidence 4667777776666443 444455566666666666665443 2 334567778888877
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHI-QTAASY 525 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l-GdydeAle~LekALei~ekllG~dhp-~tA~a~ 525 (1349)
|.. ++..+|..+++++++++.... .-...+..+..||.+|..- .++++|+.+|++|-+.+.. .... ..-.++
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~ 157 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCL 157 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHH
Confidence 765 499999999999999987653 1223455667889998754 8999999999999988742 2221 223567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 526 HAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 526 ~nLA~ay~~lGdydEAie~lekALe 550 (1349)
...|..-..+++|.+|+..|++...
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999988876553
No 184
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.47 E-value=0.00018 Score=57.66 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 478 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~ 478 (1349)
++.++++||.+|..+|++++|+.++++++.+++.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999985
No 185
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.45 E-value=0.0029 Score=83.02 Aligned_cols=215 Identities=14% Similarity=0.016 Sum_probs=151.5
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
.+|..+..|...-..+..+++.++|...+++||....-.-+...-+++.+|.||=.+| |.-+.-.+.|+||.+++.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd- 1528 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD- 1528 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc-
Confidence 3666666676666677889999999999999997641111223345667777776666 455666778888887653
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 471 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 471 l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
....|..|.-+|..-+++++|.++|+..++-+. +...+|..+|..++.+.+-++|...+.+|+.
T Consensus 1529 --------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 --------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred --------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 245678899999999999999999999887763 3456788889999999999999999999998
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 000695 551 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 630 (1349)
Q Consensus 551 I~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekA 630 (1349)
.+.+ .+|.....-.+.|.+ .....+..+++..+... .++--.++|..+.......|+.+.++..|+++
T Consensus 1593 ~lPk---~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPK---QEHVEFISKFAQLEF-KYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcch---hhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7644 346555544444432 22223333334332221 12234567888888888899999999999999
Q ss_pred HHHhccc
Q 000695 631 AKVKGNF 637 (1349)
Q Consensus 631 LeL~~kl 637 (1349)
+.+.-..
T Consensus 1661 i~l~l~~ 1667 (1710)
T KOG1070|consen 1661 IELKLSI 1667 (1710)
T ss_pred HhcCCCh
Confidence 9875443
No 186
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.01 Score=66.02 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+..+...|..|....++..|=..|.+|-.+..+. ....+.+.+|...+.+|... +..+|+..+++|++|+.....
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr-- 108 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR-- 108 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH--
Confidence 3444455667777788899989999998887665 24446778888888887665 999999999999999876421
Q ss_pred CchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~l-GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
-...+.-+..+|.+|..- .++++|+.+|++|-+.+..- ......-.++...|..-..+++|.+|+..|++......
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~- 185 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL- 185 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 122455567889988765 89999999999999877531 11122234666677777888999999999998776541
Q ss_pred hcCCCcH-HHHHH-HHHHHHHHHhcCChhHHHHHHH
Q 000695 513 LLGPDHI-QTAAS-YHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 513 llG~dhp-~tA~a-~~nLA~ay~~lGdydEAie~le 546 (1349)
+..-. ..+.- ++.-|.+++...|.-.+...++
T Consensus 186 --~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 186 --DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred --cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 11111 11222 2344555555566554444333
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.44 E-value=0.00045 Score=83.15 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
..|..+.+++++|.+|+.+|+|++|+..|++||++ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999998 3444333367999999999999999999999999986
No 188
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.43 E-value=0.16 Score=65.38 Aligned_cols=190 Identities=14% Similarity=0.060 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+...--.|.+.+.+|+++.|+++.+.++...-. .....-+.++..+|.+.+-.|++++|..+.+++.++.++. +.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~- 532 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DV- 532 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-cc-
Confidence 333444577888999999999999999876432 2233456788999999999999999999999999997763 22
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d---hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+..+.+.+..+.++..+|+...|.. ..+........... |.....++..+...+.+ ++.+..-....+++.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~ 607 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVG 607 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhh
Confidence 22345566677899999994333332 23322222222222 22233344444444433 677766666666664
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
... .+........++.||.++...|++++|...+.+....+..
T Consensus 608 ~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 608 SVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 332 2222223333468999999999999999999988877644
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.0018 Score=73.51 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000695 441 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 520 (1349)
Q Consensus 441 y~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~ 520 (1349)
+++.|.-++..|+|..|..-|..-+.. .++.+.+..+++.||.+++.+|+|+.|...|..+++-+ ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 788999999999999999999988875 35677889999999999999999999999999988765 67777
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
...+++.||.++..+|+.++|...|++..+-|
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 78999999999999999999999999888665
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0015 Score=70.97 Aligned_cols=99 Identities=19% Similarity=0.068 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 521 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~t 521 (1349)
-.=|.-++..|+|++|..-|..||+++.... ......+|.|.|.++..++.++.|+.-+.+|+++. +.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chh
Confidence 3446778899999999999999999875542 23456788999999999999999999999999985 456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 522 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 522 A~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
-.++...|.+|..+..|++|+.-|++.+++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 677788999999999999999999988765
No 191
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.34 E-value=0.13 Score=65.72 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=111.8
Q ss_pred ChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 392 HRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~-~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
...-+.++..||.+|+ +..+++.|..++.|++.++++ .+..+ .-..+..-|+.+|...+... |+.++++++..++.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d-~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTD-LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHH-HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 3455788999999988 899999999999999999876 22211 12455567799999988888 99999999998876
Q ss_pred hcCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 471 TCGPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 471 l~G~dhP~~a~al~NL-A~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
. .|.....++.-+ ...+...+++..|++.++......... | +......+....|.++...+..+.+++.++++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2 233333333333 333333489999999999999887543 2 333344555556777778888889999999987
Q ss_pred HHHHHh
Q 000695 550 QILRAK 555 (1349)
Q Consensus 550 eI~kk~ 555 (1349)
......
T Consensus 207 ~~~~~~ 212 (608)
T PF10345_consen 207 AQARSL 212 (608)
T ss_pred HHHhhc
Confidence 776643
No 192
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.34 E-value=0.00031 Score=56.32 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~ 562 (1349)
++.++.+||.+|..+|++++|+.++++++.+.++.+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999984
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0061 Score=70.09 Aligned_cols=121 Identities=21% Similarity=0.132 Sum_probs=94.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYL 467 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGd---yeeALe~yerALel 467 (1349)
.+|..+.-|..||.+|+.+|++..|..-|++|+++. ++....+..+|.+++...+ ..+|..++++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 378888999999999999999999999999999983 4455667777877776543 47888999999874
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000695 468 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 531 (1349)
Q Consensus 468 ~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~a 531 (1349)
+|....+++.||..+...|+|.+|+..++..|+.. ..+.+....+-..++..
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 34556788899999999999999999999988764 34455444444444443
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.30 E-value=0.025 Score=61.20 Aligned_cols=175 Identities=16% Similarity=0.057 Sum_probs=120.9
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 444 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NL 444 (1349)
.+.=+.+.+++-..+.+++. .+..-...||..+.++|++.+|..+|++++.- .- .+....+..+
T Consensus 67 ~q~ldP~R~~Rea~~~~~~A---------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG------~f-A~d~a~lLgl 130 (251)
T COG4700 67 QQKLDPERHLREATEELAIA---------PTVQNRYRLANALAELGRYHEAVPHYQQALSG------IF-AHDAAMLLGL 130 (251)
T ss_pred HHhcChhHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------cc-CCCHHHHHHH
Confidence 34445555555555555442 23334677999999999999999999999863 21 2234567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000695 445 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 524 (1349)
Q Consensus 445 A~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a 524 (1349)
|...+..+++..|...+++..+.--. -........+|..|..+|++..|...|+.++..+ ++ + .+.+
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg-~-~ar~ 197 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG-P-QARI 197 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC-H-HHHH
Confidence 99999999999999999887764210 1122345568999999999999999999999886 11 1 2344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 525 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 525 ~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
+ .+..+..+|+.++|...+....+...+ ..-..+.....|+...
T Consensus 198 ~--Y~e~La~qgr~~ea~aq~~~v~d~~~r---~~~H~rkh~reW~~~A 241 (251)
T COG4700 198 Y--YAEMLAKQGRLREANAQYVAVVDTAKR---SRPHYRKHHREWIKTA 241 (251)
T ss_pred H--HHHHHHHhcchhHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHH
Confidence 4 688889999999998877655544432 2222345666777543
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.003 Score=68.75 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
...+..|-.-|.-++..|+|++|..-|..||.++.... ......+|.+.|.++..++.++.|+.-+.+||++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34567788889999999999999999999999865432 2456778999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.|....++...|.+|..+..|++|++-|++.+++
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4667788889999999999999999999999985
No 196
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.29 E-value=0.0014 Score=75.52 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+-+.|..|+.+|+|++|+.+|.+++.+ .|.....+.+.|.+|+.+..|..|..-+..|+.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 334778899999999999999999999876 456667889999999999999999999999999843
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
....+|...|.+-..+|...+|.+-|+.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 36789999999999999999999999999986
No 197
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.0036 Score=68.84 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..+..++++|..|-..|-+.-|..-|.++|.+ .|..+.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------ 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------ 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence 35778999999999999999999999999987 6888999999999999999999999999988876
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-------------HHHHHHHHHHHHHC-----
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-------------AATYINVAMMEEGL----- 493 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~-------------a~al~NLA~iy~~l----- 493 (1349)
+|..-.+..|-|..++.-|+|..|.+-+.+-... .+.+|.. -.+..+|..-+...
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhh
Confidence 4556677888899999999999998766543221 1112211 11122232222221
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 494 ---------GNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 494 ---------GdydeAle~LekALei~ekllG~dhp----~tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
|+..+ ...++++.+.. .+.. ....+|+.||..|...|+.++|..+|+-|+.
T Consensus 202 G~~iV~~yLgkiS~-e~l~~~~~a~a-----~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 202 GWNIVEFYLGKISE-ETLMERLKADA-----TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11110 01122222211 2222 2346788999999999999999999987664
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0088 Score=68.26 Aligned_cols=173 Identities=15% Similarity=0.083 Sum_probs=118.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHH
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL----------DIN 426 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKAL----------eI~ 426 (1349)
|-.+|.+|+...+|..|-.+|++.-.+ +|........-|..++..+.+..|+....... ++.
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445688888888999999999876544 66666666667777777777777776543322 211
Q ss_pred HHh-------------cC-CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000695 427 ERE-------------LG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492 (1349)
Q Consensus 427 Eri-------------lG-~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~ 492 (1349)
..+ .. .-....+...++.|.+.+..|+|+.|++-|+.|++.. | ..|. .-+++|.++..
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs----G-yqpl---lAYniALaHy~ 190 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS----G-YQPL---LAYNLALAHYS 190 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc----C-CCch---hHHHHHHHHHh
Confidence 110 00 0112456778999999999999999999999999852 2 3343 34689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc----------CCC-----cH------HHHHHHHHHHHHHHhcCChhHHHHHH
Q 000695 493 LGNVHVALRYLHKALKCNQRLL----------GPD-----HI------QTAASYHAIAIALSLMEAYPLSVQHE 545 (1349)
Q Consensus 493 lGdydeAle~LekALei~ekll----------G~d-----hp------~tA~a~~nLA~ay~~lGdydEAie~l 545 (1349)
.|+++.|+++..+.++.-.+.. |.+ .+ ....++..-+.++.+.++++.|.+.+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999988877543321 111 00 12344455567788899998887654
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.20 E-value=0.0044 Score=64.64 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...++..|...+..|+|.+|+..|+.....+ +..+....+...||.+|+..++|++|+..+++-+++ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4568889999999999999999998776553 445666789999999999999999999999999987 578
Q ss_pred CchhHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGd---------------yeeALe~yerALel 467 (1349)
|+.+-.+++..|.+++.+.. ...|+..|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 56666666666654
No 200
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.035 Score=63.28 Aligned_cols=263 Identities=14% Similarity=0.008 Sum_probs=154.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---------- 427 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~E---------- 427 (1349)
+++|+-.....++++|+..|.+.|......-...-.+.-.+...|+.+|...|++..--+.....-...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4566777788899999999988876511110001123345677899999999887543333222211111
Q ss_pred ------HhcC-CCC-chhH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000695 428 ------RELG-LDH-PDTM--------------------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 479 (1349)
Q Consensus 428 ------rilG-~Dh-pdta--------------------~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~ 479 (1349)
..-+ .|+ ++.+ ..-..++.+|+..|+|.+|+....-.+.-+++.- +.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cccce
Confidence 1111 111 1111 1123467788899999999998888887766642 44555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~t-A~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
...+..-..+|....+..++..-+..|-......+-+ +++ +..-..-|.+++.-.+|.-|..||-+|++-|. ++.
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft--~l~ 240 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT--LLK 240 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc--ccc
Confidence 5666666778888888888888777776665444332 222 23333345566778899999999999998874 456
Q ss_pred CCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH--HHCCChHHHHHHHHHHH
Q 000695 559 DDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVA 631 (1349)
Q Consensus 559 dhp~T~eal~~La--~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy--~aqGdyEEAle~yekAL 631 (1349)
.|.....++.++. .+.....+.-.++........ .......+++..++.+| +.+.+|..|++.|..-+
T Consensus 241 ~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~-----~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 241 MDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK-----HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh-----hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 6665555554442 333333333334332221111 01113445666777776 55678888888776544
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.0023 Score=68.13 Aligned_cols=103 Identities=11% Similarity=-0.038 Sum_probs=84.7
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
...+.....+..|.-++..|++++|..+|+-.... ++...+-+..||.|+..+++|++|+..|-.|..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 35667778889999999999999999999876653 23345567899999999999999999999988753
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 471 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 471 l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
.++| ...+..|.+|..+|+...|+.+|+.++..
T Consensus 102 ---~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 ---KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 2333 23677999999999999999999999873
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.018 Score=71.11 Aligned_cols=183 Identities=13% Similarity=-0.032 Sum_probs=120.7
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000695 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTMKSY 441 (1349)
Q Consensus 366 ~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~----lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay 441 (1349)
-.||-+.+++++.++.+ ...+.++.-......|+.....+.. ..+.+.|...+...+.. .|+-...+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 46888899998888764 2211111111111223322222222 22344455555554443 46777888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 521 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~t 521 (1349)
...|.++...|+.++|+++|++++......- .....++..+|.++..+.+|++|..+|.+.++.. .. ..
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~W--Sk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KW--SK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----cc--HH
Confidence 9999999999999999999999885332211 1124568899999999999999999999888753 12 24
Q ss_pred HHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 522 AASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 522 A~a~~nLA~ay~~lGdy-------dEAie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
+..+|..|.+|...|+. ++|..+++++-....+..|..-|.-.-+..
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~R 393 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIR 393 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Confidence 66677889999999999 788888888887777766655554333333
No 203
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.12 E-value=0.02 Score=57.85 Aligned_cols=122 Identities=23% Similarity=0.207 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhcCC---CCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 394 MTAGAYSLLAVVLY--HTGDFNQATIYQQKALDINERELGL---DHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~--~lGdyeeAle~~qKALeI~ErilG~---Dhpd-ta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.++.+|..|+..-. .-|-|++|..-|++|.++.+.+-.. ||.. .+.++..|+..+..+|+|++++.-..++|..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 35667777766544 4588999999999999997654322 2211 2567788999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 468 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 468 ~e~l~G~dhP~----~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
+... |.-|.+ .+.+-++.|..+..+|+.++|+..|+.+-++..+.-|.
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8664 444443 34556788999999999999999999999988765543
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.08 E-value=0.047 Score=67.87 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL--- 467 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qK------ALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel--- 467 (1349)
..|..-|.+|....++++|+++|++ |+++.+-.+. ..+...--..|.-+...|+++.|+.+|-.|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3466667778888888999988765 5555443321 223444445677777888888888777544322
Q ss_pred ----------------HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHHHHHH
Q 000695 468 ----------------LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH-------------------KALKCNQR 512 (1349)
Q Consensus 468 ----------------~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Le-------------------kALei~ek 512 (1349)
...+. +.-.....|-.+|.-|...|+|+-|.++|. .|.++.++
T Consensus 739 ieaai~akew~kai~ildniq--dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQ--DQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhh--hhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 22111 111111234455666667777777666653 33444445
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH------HHHHHHHHHh
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE------QTTLQILRAK 555 (1349)
Q Consensus 513 llG~dhp~tA~a~~nLA~ay~~lGdydEAie~l------ekALeI~kk~ 555 (1349)
..|+. .+...|..-|.-+-..|+|.+|.++| .+|++++.+.
T Consensus 817 ~~~~e--~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~ 863 (1636)
T KOG3616|consen 817 CHGPE--ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKH 863 (1636)
T ss_pred hcCch--hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhh
Confidence 55543 35566767777788899999998876 4566666554
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0061 Score=70.08 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=97.4
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 000695 344 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQ 420 (1349)
Q Consensus 344 vK~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG---dyeeAle~~q 420 (1349)
-.+......+++.+..+|.+|+.+|++..|...|.+|+++ .++....+..+|.+++.+. +-.+|..+++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455667778888999999999999999999999999987 3455667788888887764 4567888999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000695 421 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 487 (1349)
Q Consensus 421 KALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA 487 (1349)
+++.. ++....+++.||..++..|+|.+|...++..+... ..+.|....+-..++
T Consensus 218 ~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia 272 (287)
T COG4235 218 QALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIA 272 (287)
T ss_pred HHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHH
Confidence 99876 46678899999999999999999999999988753 334454444333333
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.96 Score=54.03 Aligned_cols=231 Identities=13% Similarity=-0.052 Sum_probs=143.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTA-GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A-~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
-++..+..|+|+.|..-|+..+. +|++- .-+..|-.-....|+.+.|..|...|.... |...
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~ 188 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLP 188 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCc
Confidence 35666789999999998886653 33332 223333334456899999999999987763 4444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 516 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~--~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~ 516 (1349)
.+...+-...+..|+|+.|+++.+....... .+++-.+ .+..+..-+..+. .-+...|.....+++++.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~------ 259 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA------ 259 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC------
Confidence 4444455566789999999999988776432 2222222 2333333333332 235778888888888775
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhHHHHHHHHhccCCCchh
Q 000695 517 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKPDAS 594 (1349)
Q Consensus 517 dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~--L~qk~~eqAEAl~~~a~a~d~~ 594 (1349)
+..+-.-..-|.+|+..|+..++-..++.+.+. +-||.....+..... .-....+.++.+ ....
T Consensus 260 --pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~ar~gdta~dRlkRa~~L--~slk---- 325 (531)
T COG3898 260 --PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRARSGDTALDRLKRAKKL--ESLK---- 325 (531)
T ss_pred --CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHhcCCCcHHHHHHHHHHH--HhcC----
Confidence 223334445688999999999999999888754 568877655543321 011111111111 1111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 595 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 595 ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+...+....++.....-|+|..|...-+.+.++-++
T Consensus 326 ------~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 326 ------PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred ------ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 123445566666667788998888888777776543
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.98 E-value=0.011 Score=61.76 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 474 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~ 474 (1349)
....++.-|...+..|+|.+|+..++....-+ +..+....+...|+.+|+..++|++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 34567888999999999999999988765432 334556788999999999999999999999999986 57
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000695 475 SHPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 510 (1349)
Q Consensus 475 dhP~~a~al~NLA~iy~~lGd---------------ydeAle~LekALei~ 510 (1349)
.||.+-.+++..|.++..+.. ...|...|++.++.+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 899999999999999988765 667777777766654
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0032 Score=70.07 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
+..+..+-+.|+.|+...+|..|+..|.+|+.+ +|..+..|.+-|.+|+.+.+++.+..-.++|+++
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql----- 73 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL----- 73 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----
Confidence 445677888899999999999999999999966 7888889999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
.++.+..++.||.++.....|++|+..+++|..+.+..
T Consensus 74 ---~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ---DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ---ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999887653
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.96 E-value=0.0032 Score=56.71 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 444 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 444 LA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
|..+|...++|++|++++++++.+ +|.....+..+|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 46677889999999999999999999999999775
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0034 Score=56.59 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=57.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 000695 486 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 565 (1349)
Q Consensus 486 LA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~e 565 (1349)
|..+|...++|++|+.++++++.+. |.....+..+|.+|..+|++.+|+..++++++. +++++....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHHH
Confidence 4678999999999999999999884 446778889999999999999999999999965 566655443
Q ss_pred H
Q 000695 566 A 566 (1349)
Q Consensus 566 a 566 (1349)
.
T Consensus 68 ~ 68 (73)
T PF13371_consen 68 L 68 (73)
T ss_pred H
Confidence 3
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.023 Score=68.50 Aligned_cols=255 Identities=19% Similarity=0.136 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHhhCC---------CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALA-KLVAVCGP---------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALe-l~eqvlG~---------dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
...++|.++++.|.|.-+..+|.+||. ...+.-.. ........+++.|..|.+.|+.-.|.++|.+|+..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 346788999999999999999999996 44433211 11223567899999999999999999999999998
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHcCC-------------------------------------------------HHH
Q 000695 426 NERELGLDHPDTMKSYGDLAVFYYRLQH-------------------------------------------------TEL 456 (1349)
Q Consensus 426 ~ErilG~Dhpdta~ay~NLA~ly~~lGd-------------------------------------------------yee 456 (1349)
+.+ ..+.|..||.|+....+ .+-
T Consensus 365 fh~--------nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slef 436 (696)
T KOG2471|consen 365 FHR--------NPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEF 436 (696)
T ss_pred Hhc--------CcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHH
Confidence 755 23556677776653211 244
Q ss_pred HHHHHHHHHHHHHH--hc-------------C--C------------------------CCh--------hHHHHHHHHH
Q 000695 457 ALKYVKRALYLLHL--TC-------------G--P------------------------SHP--------NTAATYINVA 487 (1349)
Q Consensus 457 ALe~yerALel~e~--l~-------------G--~------------------------dhP--------~~a~al~NLA 487 (1349)
|.-+++.||.+.-. .+ | . ..| ....++.+.+
T Consensus 437 A~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~a 516 (696)
T KOG2471|consen 437 ARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMA 516 (696)
T ss_pred HHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 55667777765410 00 0 0 001 1245667778
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 000695 488 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA-----LSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 488 ~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~a-----y~~lGdydEAie~lekALeI~kk~LG~dhp~ 562 (1349)
.+-.++|+.-.|+..-.+.|++. ....+|-.||.+ +..+.+..+|..++.-- .+|.++..
T Consensus 517 yV~L~Lgd~i~AL~~a~kLLq~~---------~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~------~~~~~~f~ 581 (696)
T KOG2471|consen 517 YVELELGDPIKALSAATKLLQLA---------DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPY------LLGQDDFK 581 (696)
T ss_pred HHHHHhcChhhHHHHHHHHHhhh---------hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChh------hcCCcccc
Confidence 88888999999988888888764 233344444444 44566666666665421 12333211
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhc-cCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 563 TQDAAAWLEYFESKAFEQQEAARNG-TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 563 T~eal~~La~L~qk~~eqAEAl~~~-a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.-.... .+.+... .-+++.-. .+..+ .....-.....-++.+||.+|.-+|++++|...+.+|+.+..++.
T Consensus 582 ~~~n~~---Df~~~~~-~~e~l~~s~~r~~q-~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v 653 (696)
T KOG2471|consen 582 LPYNQE---DFDQWWK-HTETLDPSTGRTRQ-SVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV 653 (696)
T ss_pred cccchh---hhhhhhc-cccccCCcCCCCcc-cccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc
Confidence 110000 0000000 00111100 00000 000000011234688999999999999999999999998877544
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.88 E-value=0.088 Score=59.79 Aligned_cols=158 Identities=23% Similarity=0.229 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
+..++.-|...+..|+|++|+.+|++...- -+..+..-.+...++.+++..++|++|+.+..+-+.++ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 556777888888999999999999987632 23345667889999999999999999999999988763 57
Q ss_pred ChhHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGL-----GNVH---VALRYLHKALKCNQRLLGPDHIQ--------------TAASYHAIAIALS 533 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~l-----Gdyd---eAle~LekALei~ekllG~dhp~--------------tA~a~~nLA~ay~ 533 (1349)
|++...+++..|.++... .+.. +|+.-|++.++.+ +++.. .+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888887643 2233 3444444444332 33221 2233345778888
Q ss_pred hcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 534 LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 534 ~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
+.|.+-.|+..+++.++-+ ++-..+.+++.+|...
T Consensus 179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~ea 213 (254)
T COG4105 179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEA 213 (254)
T ss_pred HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHH
Confidence 8899988888888777654 3344555555555433
No 213
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.85 E-value=0.011 Score=65.70 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=84.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----CchhHHH
Q 000695 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTMKS 440 (1349)
Q Consensus 366 ~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D-----hpdta~a 440 (1349)
....+++|++.|.-|+-.++ +.+..+...+.++..+|.+|..+|+.+....++++|+..+++.+-.. ..+...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34578899999998887654 44566778899999999999999999999999999999988766332 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 441 YGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 441 y~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
++.+|.++.++|++++|..+|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999999864
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.13 Score=61.62 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=95.5
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000695 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 446 (1349)
Q Consensus 367 qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ 446 (1349)
...+..|...+.++|...++.++...........+|=..|....+|+.-+.+.+..-.+ -..+-.....+...+|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 33455555666677776666655434444556677777899999999888877665333 11223344556778888
Q ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhc
Q 000695 447 FYYR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLL 514 (1349)
Q Consensus 447 ly~~---lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l---------GdydeAle~LekALei~ekll 514 (1349)
++.+ .|+.++|+..+..++.- .......++..+|.+|..+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 9988 89999999999887653 2233456777888887643 124556666665555431
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCh
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAY 538 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdy 538 (1349)
....-.|+|.++...|..
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHD 275 (374)
T ss_pred ------cccchHHHHHHHHHcCCc
Confidence 122334566666666653
No 215
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.003 Score=56.12 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 406 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 406 y~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
++..|+|++|+.+|++++.. +|+...++..||.+|...|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35689999999999999987 5677888999999999999999999999998874
No 216
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.41 Score=58.09 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
..+...|..-..++++..|...|++||.. ++ .....+...+.+-+.......|...+.+|+.++
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdv-------d~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------- 137 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDV-------DY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------- 137 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhc-------cc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------
Confidence 33444455555667777777777777653 22 334466677788888888888888888888875
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HHHHhcCCCChhHHHHHHHHHH
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALY--------------------------LLHLTCGPSHPNTAATYINVAM 488 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALe--------------------------l~e~l~G~dhP~~a~al~NLA~ 488 (1349)
|.+-..++..-.+...+|+..-|...|++=+. +++.. ---||.+ ..+...|.
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP~v-~~wikyar 215 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHPKV-SNWIKYAR 215 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecccH-HHHHHHHH
Confidence 33444555555555555655555555544332 11111 1136654 56778888
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 489 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 489 iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
.-...|+...|...|++|++.. |.+ ......+...|..-..+..++.|.-.|+-|++-. ..+ ++.....
T Consensus 216 FE~k~g~~~~aR~VyerAie~~----~~d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~--raeeL~k 284 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFL----GDD-EEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKG--RAEELYK 284 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc--cHHHHHH
Confidence 8889999999999999998875 333 3344555566666667777777777777666543 111 2223333
Q ss_pred HHHHHHHHhHHHH---HHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 000695 569 WLEYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 569 ~La~L~qk~~eqA---EAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL 633 (1349)
.+..+.++-++.. .++-......-......+....+..+.+| .+....|+-++-.+.|++|+.-
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl-rL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL-RLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH-HHHHhcCCHHHHHHHHHHHHcc
Confidence 3333333332221 11110000000111222233344444444 4455579999999999999863
No 217
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.14 Score=58.47 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.+...|.+|+..|++++|+........ ..+...--.++.++.+++-|....++..++.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~-------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGEN-------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 344557889999999999988776322 234444456777888889888888888776332
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
.++..||..+...-- +-.-++.|..+++...++. +.+..+++.+|.++..+|+|++|...++.||.-.
T Consensus 170 ---~tLtQLA~awv~la~---ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLAT---GGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----- 237 (299)
T ss_pred ---HHHHHHHHHHHHHhc---cchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 244555555544311 1112455555666555433 4456788999999999999999999999999754
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000695 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 566 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ea 566 (1349)
.....++.|+-.+-...|.-.++..-+..-+. ...+.|+.+...
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22356677787777888888777654433222 335777765543
No 218
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.73 E-value=0.085 Score=53.55 Aligned_cols=119 Identities=23% Similarity=0.164 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---CC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~---dh-p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
+...+..|...+..|.|++|..-|++|+++...+-.. +| -.-+.|+..|+.++..+|+|++++....+||..+.+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 3444555677788899999999999999998766322 11 1246789999999999999999999999999998875
Q ss_pred cCCCCch----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 430 LGLDHPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 430 lG~Dhpd----ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
|.-|.+ .+.+.++-|..+..+|+.++|+..|+.+-++.....|
T Consensus 89 -GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 89 -GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp ---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred -cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 443443 3455678899999999999999999999998766554
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.048 Score=66.48 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=99.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc--------
Q 000695 364 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-------- 435 (1349)
Q Consensus 364 yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp-------- 435 (1349)
..+..+...-+++.++||++ +++.+.+|..||.-. ..-..+|..+|++|++..+..++.+..
T Consensus 178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 34677888999999999987 577888888887532 334789999999999998887765310
Q ss_pred ---------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000695 436 ---------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 505 (1349)
Q Consensus 436 ---------dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek 505 (1349)
-...+...||.|..++|+.++|++.++..++..- ..+...+..||-.+|..++.|.++..++.+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1245567899999999999999999999886421 123567889999999999999999888766
No 220
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.71 E-value=0.27 Score=62.81 Aligned_cols=197 Identities=18% Similarity=0.127 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000695 350 SSADGRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 350 sss~A~~LlelG~~yl-~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er 428 (1349)
...+++..+.+|.+++ ...++++|..++.+++.+.++ .........+...|+.+|...+... |..+++++++.++.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 3456888889999888 678999999999999998765 2333334667778899999998877 99999999998765
Q ss_pred hcCCCCchhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000695 429 ELGLDHPDTMKSYGDL-AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 507 (1349)
Q Consensus 429 ilG~Dhpdta~ay~NL-A~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekAL 507 (1349)
.+ +......+.-+ ...+...+++..|++.++....+.... | +....+.+....|.++...+..+.+++.++++.
T Consensus 132 -~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 -YG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred -cC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 12 22223333333 333333489999999999999877543 2 222233444455777788888999999999998
Q ss_pred HHHHHh--cCCCcHHHHHHHHHHHHH--HHhcCChhHHHHHHHHHHHHHHH
Q 000695 508 KCNQRL--LGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 508 ei~ekl--lG~dhp~tA~a~~nLA~a--y~~lGdydEAie~lekALeI~kk 554 (1349)
...... .+..++....++..+-.+ +...|+++.+...+++.-+.+..
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 877654 222244444455444444 44678877877776655555444
No 221
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.70 E-value=0.0043 Score=55.14 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=47.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
+..|+|++|+.+|++++.. +|....++..||.+|...|++++|...+.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999976 5677889999999999999999999999998765
No 222
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=1.1 Score=54.53 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 425 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI------- 425 (1349)
....++..++.-...|...-|...|..|++.+.. +......+...|..-..+..++.|...|+-||+.
T Consensus 206 ~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 206 KVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 3445666677777888888888888888877532 3334445555666666667777777777666553
Q ss_pred --------HHHhcCC---------------------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-
Q 000695 426 --------NERELGL---------------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS- 475 (1349)
Q Consensus 426 --------~ErilG~---------------------Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d- 475 (1349)
+++.+|. ++|..-.++..+-.+....|+.+.-.+.|++|+.-.--.....
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 2222332 2344445566666667778999999999999987321100000
Q ss_pred ChhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 476 hP~~a~al~NLA~i-y~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
-......+.|.|.. -....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+-.|+
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 01123445555543 346789999999999999865 33455567777777777777777776666655544
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.69 E-value=0.0067 Score=70.18 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000695 443 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 522 (1349)
Q Consensus 443 NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA 522 (1349)
.-|.-|+.+|.|++|+.||.+++.+ .|....++.|.|++|++++.|..|..-+..|+.+.+. +.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--------Y~ 165 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--------YV 165 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--------HH
Confidence 3577899999999999999999985 3555677899999999999999999999999998643 56
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 572 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~ 572 (1349)
.+|...+.+-..+|...+|.+-++.++++ .++.......++.|..
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L-----EP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL-----EPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh-----CcccHHHHHHHHHhcc
Confidence 78888999999999999999999998865 4555544444444443
No 224
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.68 E-value=0.015 Score=64.76 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=81.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHH
Q 000695 451 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD-----HIQTAASY 525 (1349)
Q Consensus 451 lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d-----hp~tA~a~ 525 (1349)
...+++|++.|.-|+...... +..+...+.++..+|.+|..+|+.+....++++|++.+.+.+-.. ......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788888888888765543 456668899999999999999999999999999998887765322 33557888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 526 HAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 526 ~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+.+|.++.+.|++++|.+++.+.+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999888753
No 225
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.68 E-value=0.013 Score=66.17 Aligned_cols=227 Identities=11% Similarity=0.018 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000695 410 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 489 (1349)
Q Consensus 410 GdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~i 489 (1349)
.+.++|+.-|++.+++- |.....-..++-.+-.+++++++|++-++.|++.|...+.....++... +.+++-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence 47889999999999873 4444556778888999999999999999999999987766544443321 22223222
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 569 (1349)
Q Consensus 490 y~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~ 569 (1349)
-....+.+.-..+|+..|+..+..- +......+-..||.+|+..++|.+-...+++...-++.--|+++..-..-+.-
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 2344556666778887777665432 11222344456999999999999988888888888877778777543332222
Q ss_pred HHHH------HHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHH-HHHHHHHHHCCChHHHHHHHHHHHHHhccccCCCC
Q 000695 570 LEYF------ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLL-DYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 642 (1349)
Q Consensus 570 La~L------~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL-~~Lg~iy~aqGdyEEAle~yekALeL~~kl~qn~~ 642 (1349)
+..+ .++.....++++..+.+.... --|+.+..+. ..-|..+.+.|++++|..-|=.|.+-++..++-+.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 2211 222222233444333332211 1233443333 33455568899999999999999998888887777
Q ss_pred CCCCC
Q 000695 643 LTSPD 647 (1349)
Q Consensus 643 ta~~~ 647 (1349)
+.+.+
T Consensus 270 ttCLK 274 (440)
T KOG1464|consen 270 TTCLK 274 (440)
T ss_pred hHHHH
Confidence 77554
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.034 Score=62.86 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
....+.+..++.-.|.|.-.+..+.+.+.. +.+.-......||.+.++.||.+.|..+++..-......-+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q 249 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ 249 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc
Confidence 445666677788888999889988888763 3345556778899999999999999999997765544433332
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
.......+.+.+|...++|..|...|.+++.. ++..+.+-+|-|.|+.-+|+...|++.++.++.+.
T Consensus 250 --~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 250 --GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred --hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 34567889999999999999999999888763 45567778899999999999999999999988764
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 000695 514 LGPDHIQTAASYHAIAIAL 532 (1349)
Q Consensus 514 lG~dhp~tA~a~~nLA~ay 532 (1349)
+.+..+-...+||..+|
T Consensus 317 --P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMY 333 (366)
T ss_pred --CccchhhhHHHHHHHHH
Confidence 33333334445555444
No 227
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.14 Score=58.48 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
..+..-|.+|.+-|++++|+....+...+ .+...--.++.++.+++.|...++++..+-..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 44555678899999999999887763322 22223345677888899999888888775321
Q ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~----lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
.++..||..|.. .+++..|.-+|++.-+- .+.+..++..+|.++..+|+|++|...++.|+.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 344555555543 23466666666653321 2336677888999999999999999999999864
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q 000695 553 RAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 553 kk~LG~dhp~T~eal~~La~L 573 (1349)
...++.++..+--++..
T Consensus 237 ----d~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 237 ----DAKDPETLANLIVLALH 253 (299)
T ss_pred ----cCCCHHHHHHHHHHHHH
Confidence 34566655444444433
No 228
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.57 E-value=0.029 Score=65.24 Aligned_cols=136 Identities=24% Similarity=0.182 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG--dyeeAle~~qKALeI~ErilG~Dh 434 (1349)
+.-.-.+|+..++++.|...++..-++ ..+...+....|++.+..| .+.+|...|+...+ ..
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~ 197 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KF 197 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------cc
Confidence 334457888999999999887765322 2233333344445555555 57888888877432 22
Q ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHh
Q 000695 435 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQRL 513 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdy-deAle~LekALei~ekl 513 (1349)
+.+...++.+|.++..+|+|++|.+.+++|+. ..+....++.|++.+...+|+. +.+.+++.+....
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~---- 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS---- 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----
Confidence 44678899999999999999999999999875 2355677899999999999998 5566677665443
Q ss_pred cCCCcHHH
Q 000695 514 LGPDHIQT 521 (1349)
Q Consensus 514 lG~dhp~t 521 (1349)
.++|+.+
T Consensus 266 -~p~h~~~ 272 (290)
T PF04733_consen 266 -NPNHPLV 272 (290)
T ss_dssp -TTTSHHH
T ss_pred -CCCChHH
Confidence 3666644
No 229
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.54 E-value=0.039 Score=59.71 Aligned_cols=125 Identities=19% Similarity=0.147 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000695 419 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 498 (1349)
Q Consensus 419 ~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdyde 498 (1349)
++.-|.-++..++ ...+..++..+|..|.+.|++++|+++|.++.+.+. ..-.....+.++-.+....++|..
T Consensus 19 Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 19 LEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3333444444333 345778899999999999999999999999887532 223456778888888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 499 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 499 Ale~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
...++.+|-.+... |.+..........-|..+...++|.+|.+.|..+...+
T Consensus 92 v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 92 VEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999988765 23322333344446677778899999999988776554
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.52 E-value=0.06 Score=66.59 Aligned_cols=135 Identities=19% Similarity=0.019 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000695 368 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 447 (1349)
Q Consensus 368 GdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~l 447 (1349)
...+.|.+++...+.. .|.-+..+...|+++...|+.++|+..|++|+....... .-...+++.+|++
T Consensus 247 ~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHH
Confidence 3445555555555443 466677888999999999999999999999985432211 1124568899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHIQ 520 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdy-------deAle~LekALei~ekllG~dhp~ 520 (1349)
+..+.+|++|..++.+.++. .....+...+..|.+|...|+. ++|.++|.++-.+..+..|...|.
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~ 387 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPL 387 (468)
T ss_pred HHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 99999999999999988863 2233455667789999999999 888888888888777766655443
Q ss_pred H
Q 000695 521 T 521 (1349)
Q Consensus 521 t 521 (1349)
-
T Consensus 388 E 388 (468)
T PF10300_consen 388 E 388 (468)
T ss_pred H
Confidence 3
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.15 Score=57.97 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+.+.++.++.-+|+|.-.+..+.+.+.. +.+........||.+....|+.+.|..|+++.-+....+.+ -
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--L 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--c
Confidence 36677888899999999999999888773 23444555677899999999999999999987665444432 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
........|.+.+|...++|..|...|.+++... +..+.+-.+-|.++...|+...|++.++.++++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2345567889999999999999999998887652 3356667788999999999999999988887663
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.47 E-value=0.29 Score=56.91 Aligned_cols=253 Identities=15% Similarity=0.104 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~-~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+..+..++..++++++..+..++.......+...... ...+|..|..+. .+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq-~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ-QLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-HHHHHHHHHHHHHhhccc--------
Confidence 3344455666789999999999999887765543332211 222333333222 222333333333211000
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G--~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
+...... +-..-.++..........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 0000000 111111111222233344445544444442 11345678899999999999999999999988776431
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 000695 512 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 590 (1349)
Q Consensus 512 kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALe-I~kk~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a 590 (1349)
. .......+.+..|.++...|+..+|+..++..+. .+....+....... ..++.. .....
T Consensus 178 ~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 S----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL--KSGLLE-------------SLEVI 238 (352)
T ss_pred c----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH--hhcccc-------------ccccc
Confidence 1 1111345566679999999999999999987776 33322221111110 001100 00000
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHC------CChHHHHHHHHHHHHHhcccc
Q 000695 591 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 591 ~d~~ia~k~h~svaelL~~Lg~iy~aq------GdyEEAle~yekALeL~~kl~ 638 (1349)
.............+.++..+|...... +..++++.+|++|+++.+..+
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111123456677777776666 889999999999999877655
No 233
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.44 E-value=0.061 Score=58.39 Aligned_cols=133 Identities=15% Similarity=0.038 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 436 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpd 436 (1349)
-+.+|......|++.+|...|++++.- . -..-...+..+|.+.+..+++..|...+++..+.. + ...
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG------~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-----p-a~r 158 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSG------I-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-----P-AFR 158 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcc------c-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-----C-ccC
Confidence 456677888999999999999999853 2 22335577889999999999999999888776542 1 112
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
.......+|..|..+|++..|+..|+.++..+ |. .......+.++..+|+.++|..-|....+...
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 33445668999999999999999999999853 11 23444578899999999999888776665543
No 234
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.17 Score=59.14 Aligned_cols=261 Identities=12% Similarity=-0.000 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay-~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+++|..|...|++++-..+....-..+..+ ..+..+.....|-... ..-+.+..-+.++..+++...+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 356788999999999887766666555554443 1233444444443333 333445566777777776654320 0
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
..-.-..-..|..+|+..++|.+|+.+....+.-+++.- |.......+..=..+|..+.+..+|...+..|-.....+
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 011122335688999999999999999999888777653 334445555556677888888889988888777665444
Q ss_pred cCCCcHHH-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhccCC
Q 000695 514 LGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 590 (1349)
Q Consensus 514 lG~dhp~t-A~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La--~L~qk~~eqAEAl~~~a~a 590 (1349)
+-+ |.. +..-..=|.++..-.||..|..||-+|++-|... .++.....++.++. .+.....+.-.++-.....
T Consensus 202 Ycp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~ 277 (411)
T KOG1463|consen 202 YCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLA 277 (411)
T ss_pred ccC--HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHH
Confidence 432 222 2333344666777799999999999999888543 44555555555443 3333333332222221111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHH--HHCCChHHHHHHHHHHHH
Q 000695 591 PDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 632 (1349)
Q Consensus 591 ~d~~ia~k~h~svaelL~~Lg~iy--~aqGdyEEAle~yekALe 632 (1349)
.. ......+++..++.++ +.+.+|+.|+.-|..-|.
T Consensus 278 l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 278 LK------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred Hh------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 11 1112345667777777 456788888888877554
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.079 Score=54.43 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000695 441 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--------------HPNTAATYINVAMMEEGLGNVHVALRYLHKA 506 (1349)
Q Consensus 441 y~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d--------------hP~~a~al~NLA~iy~~lGdydeAle~LekA 506 (1349)
+...|......++...++..+++++.++.--+-.+ +.....++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445566677888889999999988875332221 1112456677888899999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCC
Q 000695 507 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 559 (1349)
Q Consensus 507 Lei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~d 559 (1349)
+.+. |..-.++..+-.+|..+|+..+|+.+|+++...+.+.+|..
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9874 44556788899999999999999999999999999888854
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.11 Score=53.41 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--C------------hhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000695 355 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--H------------RMTAGAYSLLAVVLYHTGDFNQATIYQQ 420 (1349)
Q Consensus 355 ~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~d--h------------p~~A~ay~~LA~ay~~lGdyeeAle~~q 420 (1349)
..+...|......|+...++..+.+++.++.--+-.+ . .....++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445556677788899999999999998875322111 1 1234467788888999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 421 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 421 KALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
+++.+ +|..-.+|..|-.+|...|++.+|+.+|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99987 566778899999999999999999999999999887766643
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0086 Score=66.80 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 521 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~t 521 (1349)
..-|..|+.-.+|..|+.+|.+|+.+ .|..+..|.|-|.+|+++.+|+.+..-..+|+++. +..
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHH
Confidence 34466777788899999999999975 57888899999999999999999999999999885 667
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 522 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 522 A~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
+..++.||..+.....|++|+..+++|+.+++..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999988764
No 238
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.018 Score=66.81 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
..|..+-+.|..|+...+|..|+..|.+.|..-. .+....+.+|.+.|.+.+.+|+|..|+.-+.+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3688899999999999999999999999987531 344556889999999999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 432 ~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
.|..+.+|+.=|.|++.+.++++|+.+++..+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57789999999999999999999999999887764
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.27 E-value=0.062 Score=65.50 Aligned_cols=128 Identities=19% Similarity=0.142 Sum_probs=97.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------
Q 000695 404 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH------- 476 (1349)
Q Consensus 404 ~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh------- 476 (1349)
.-..+..+...-+++.++||++. ++.+.+|..||.- ...-..+|+++|++|++..+..+|.+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 33445668888899999999984 6677777777642 234578999999999998877776531
Q ss_pred ----------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 477 ----------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 477 ----------P~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
.-...+...||++..++|+.++|++.+++.++..- ......++++|..++..++.|.++...+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00144567899999999999999999998886541 12356789999999999999999888766
Q ss_pred H
Q 000695 547 T 547 (1349)
Q Consensus 547 k 547 (1349)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 5
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.021 Score=68.78 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 000695 394 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALY-LLHL 470 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpd--ta~ay~NLA~ly~~lGdyeeALe~yerALe-l~e~ 470 (1349)
+...++..-+..+|.+|+|.+|..++...=. .+...|...|. .+..++|||.+++++|.|..+..+|.+||. .+..
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999887765422 12212222222 355678999999999999999999999996 3333
Q ss_pred hc-C-CC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000695 471 TC-G-PS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 533 (1349)
Q Consensus 471 l~-G-~d-------hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~ 533 (1349)
+. | .. .-....+++|.|..|...|+.-.|.++|.+|...+.+ ....|..||.++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCI 380 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHH
Confidence 21 2 00 1123578899999999999999999999999998843 2466778888775
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=2 Score=54.28 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 422 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKA 422 (1349)
++.....+++++|..+..+..+++|.+||.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777777777777777654
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.12 E-value=0.68 Score=53.43 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHH-h-hCCCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000695 351 SADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVA-V-CGPYH----RMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 423 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qG-dyeEAlel~eeALel~eq-v-lG~dh----p~~A~ay~~LA~ay~~lGdyeeAle~~qKAL 423 (1349)
...++.+|+.|...+..+ ++++|..++++|++++.. . ....+ .....++..|+.+|...+.++.... ..+++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l 110 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHH
Confidence 456888999999999999 999999999999999755 1 11222 2356789999999999988764443 55555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 424 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 424 eI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
...+..+| +++.+.. ..|-.+.. .++.+++.+.+.+++.
T Consensus 111 ~~l~~e~~-~~~~~~~--L~l~il~~-~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 111 RLLESEYG-NKPEVFL--LKLEILLK-SFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHhCC-CCcHHHH--HHHHHHhc-cCChhHHHHHHHHHHH
Confidence 55555443 3333321 22222222 5555555555555443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.19 Score=58.66 Aligned_cols=167 Identities=14% Similarity=0.003 Sum_probs=123.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
...+......|++.+|-....+.|.- +|.-..++.---.+++.+|+.......+++.+.. ...+-|-.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~ 174 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----WNADLPCY 174 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----cCCCCcHH
Confidence 33344556788888888888877743 5555556666667788889888888777776643 23455666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
......+|..+...|-|++|++..++++++ ++....+...+|.++...|++.++.++..+.-...+. .
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s 242 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----S 242 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----h
Confidence 777778999999999999999999999986 2444566777899999999999999998876655431 1
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTT 548 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekA 548 (1349)
......-|...|..|..-+.|+.|++.|.+-
T Consensus 243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 243 WMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 2233445666788888889999999988753
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.99 E-value=0.13 Score=55.62 Aligned_cols=126 Identities=12% Similarity=-0.005 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHH
Q 000695 376 YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 455 (1349)
Q Consensus 376 l~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdye 455 (1349)
-++.-+..++..+ ....+..++..+|..|...|+++.|++.|.++.+.+ .+ .-..+..+.++-.+.+..++|.
T Consensus 18 ~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~--~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 18 KLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TS--PGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CC--HHHHHHHHHHHHHHHHHhCCHH
Confidence 3444444444333 245678899999999999999999999999977643 22 2347788899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 456 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 456 eALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
....++.+|-.+.... .+..........-|..+...++|..|...|-.++.-.
T Consensus 91 ~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999887662 2222233344446777778899999999998776443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.31 Score=56.47 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=109.9
Q ss_pred HHHHHHH-hhcccccCCChhhcchHHHHHHHHHHHhhHHhhccccCCCCCC------chHH-HHHhhhhhhhhhcCChHH
Q 000695 282 LELFLMK-RYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSP------FRKI-DVVSLVPVHKQAACSSAD 353 (1349)
Q Consensus 282 I~~~lr~-RF~y~L~~~~l~~l~klaLLReLc~KlGIqL~aRdY~fdsa~~------F~~e-DIl~LvPvvK~s~~sss~ 353 (1349)
|.+.+.. +..|.+...+.+.- ..+..++||+-....|-|....+ ..++ .|..+...+ ... .
T Consensus 65 Lekla~~~~G~f~LakvN~D~~------p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~--~~~---~ 133 (304)
T COG3118 65 LEKLAAEYKGKFKLAKVNCDAE------PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKV--LPA---E 133 (304)
T ss_pred HHHHHHHhCCceEEEEecCCcc------hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHh--cCh---H
Confidence 4443333 33355554444432 34668899988888888765422 1233 333332211 111 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH------------
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK------------ 421 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qK------------ 421 (1349)
....+..+...+..|++.+|...|..++.. .+....+...||.+|...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~ 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH
Confidence 445566778889999999999999999977 344567888999999999999888776543
Q ss_pred ---HHHHHHHhcCC-----------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 422 ---ALDINERELGL-----------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 422 ---ALeI~ErilG~-----------Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
-+++.++.... .+|+...+-+.||..|...|+++.|++++-..+.
T Consensus 206 l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 206 LQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24444443222 2456677888999999999999999988765554
No 246
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.86 E-value=1.1 Score=51.31 Aligned_cols=179 Identities=12% Similarity=0.058 Sum_probs=125.7
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000695 367 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 446 (1349)
Q Consensus 367 qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ 446 (1349)
..+.++|+.-|++++++- |.....-..++-.+-.+++.+++|++.+..|++.|.........++.+ .+.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 447889999999999873 344445567888999999999999999999999998776654443322 23334434
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHH
Q 000695 447 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTA 522 (1349)
Q Consensus 447 ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp----~tA 522 (1349)
+-....+.+.-.++|+..|+.++... +......+-..||.+|..+++|..-.+.+++.-.-++.-.|.+.. +..
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 44455556666677777777665543 233344556679999999999999888888888877766666643 344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
.+|..--++|..+.+-.+-..+|++|+.+-.
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 5555555677777777777777888877643
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.093 Score=59.01 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---ch-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD-------TMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh---pd-------ta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
.++..-|.-++..|+|.+|...|+.|+...+.+.-... ++ ..-.+.|++.|+...|+|-+++++....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45677888999999999999999999988765432222 22 234688999999999999999999998886
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 467 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 467 l~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.||....+|+..|.+....-+.++|..-|.++|++-
T Consensus 259 --------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 259 --------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred --------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 478889999999999999999999999999999863
No 248
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.12 Score=58.20 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC---Chh-------hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---HRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKAL 423 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~d---hp~-------~A~ay~~LA~ay~~lGdyeeAle~~qKAL 423 (1349)
.-.+.+.|+-++.+|+|.+|...|++|+...+...-.. .++ ..-.+.+.+.|+...|+|-++++.+...|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999998877654222 222 34468899999999999999999998887
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 424 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 424 eI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.. ++....+|+.-|.++...=+.++|..-|.++|++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 65 6778999999999999999999999999999985
No 249
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.54 E-value=0.14 Score=49.57 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 490 y~~lGdydeAle~LekALei~ekllG~d-hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
....|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3578999999999999999886654332 12355678889999999999999999999999999876 34455666777
Q ss_pred HHHHHHH
Q 000695 569 WLEYFES 575 (1349)
Q Consensus 569 ~La~L~q 575 (1349)
|+..+..
T Consensus 86 ~~~~l~~ 92 (94)
T PF12862_consen 86 WLANLLK 92 (94)
T ss_pred HHHHHhh
Confidence 7766543
No 250
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.48 E-value=0.2 Score=48.48 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000695 448 YYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 526 (1349)
Q Consensus 448 y~~lGdyeeALe~yerALel~e~l~G~d-hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~ 526 (1349)
..+.|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876654322 12355678899999999999999999999999999876 34444455554
Q ss_pred HHHHH
Q 000695 527 AIAIA 531 (1349)
Q Consensus 527 nLA~a 531 (1349)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 45444
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.46 Score=52.23 Aligned_cols=101 Identities=14% Similarity=-0.033 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
..+...+|..+...+++++|+..++.++..- .|.....-+-.+||.+...+|++++|+..+...-.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--------- 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--------- 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence 3445678899999999999999999998632 12233445667899999999999999988765322
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 518 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 518 hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
+-..+......|.++...|+-++|+..|++|++..
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23345556678999999999999999999999763
No 252
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.28 E-value=0.92 Score=54.54 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=107.2
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CCchhHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYY 449 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~---------------------Dhpdta~ay~NLA~ly~ 449 (1349)
.+|..+.++..++.++..+|++..|.++.++||-.+++.+.. .+.....++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999988864321 12234455666777888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000695 450 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 528 (1349)
Q Consensus 450 ~lGdyeeALe~yerALel~e~l~G~d-hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nL 528 (1349)
+.|-+..|+++++-.+.+ .+. +| ..++..|-....+.++|+--+++++.......+. .....-...+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 899999999888777664 222 33 3445556666677788888888777655421110 000112345667
Q ss_pred HHHHHhcCCh---------------hHHHHHHHHHHHHH
Q 000695 529 AIALSLMEAY---------------PLSVQHEQTTLQIL 552 (1349)
Q Consensus 529 A~ay~~lGdy---------------dEAie~lekALeI~ 552 (1349)
|.++..+++- +.|...+++|+..+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8888888887 88999999999775
No 253
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.28 E-value=3.3 Score=47.17 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC---C-------hhhHHHHHHHHHHHHhcC--------------CHH
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DFN 413 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~d---h-------p~~A~ay~~LA~ay~~lG--------------dye 413 (1349)
+.+.+.|+..|+..+|+.-++.=+..+....|.. . ...+.=|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 3446788899999999999999988888776651 1 122333444555444332 122
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 414 QATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 414 eAle~~qKALeI~ErilG-~D-------------------hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
.|..+...--..++.... ++ .+.....+..+.........-...++++.+|+..+....
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 333322222222222210 00 000011111111111122344567889999998887653
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 474 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 474 ~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
.......+...||..|...|+|++|+.+|+.+...+++- ........++..|..++..+|+.+..+.+.-
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 244556677789999999999999999999997776542 3345567788889999999999888776543
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.64 Score=51.15 Aligned_cols=102 Identities=18% Similarity=0.038 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000695 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 474 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~ 474 (1349)
-..+...+|..+...+++++|+..++.++... .|.-....+-.+||.+...+|.+++|+..+...-
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------- 153 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK--------- 153 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------
Confidence 34456778999999999999999999998642 2233345566789999999999999998776543
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 475 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 475 dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
++..........|.++..+|+-++|+..|++|+...
T Consensus 154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 233445556678999999999999999999999873
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.02 E-value=3.3 Score=48.25 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhhC--CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc
Q 000695 374 VTYGTKALAKLVAVCG--PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 451 (1349)
Q Consensus 374 lel~eeALel~eqvlG--~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~l 451 (1349)
.......+.+...++. ......+.++..++.+....|.++.|..++.++..... ........+....|.++...
T Consensus 122 ~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~ 197 (352)
T PF02259_consen 122 FSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQ 197 (352)
T ss_pred hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHc
Confidence 3344455555444433 22456788999999999999999999999988766421 11122455667778999999
Q ss_pred CCHHHHHHHHHHHHH-HHHHhc-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHH
Q 000695 452 QHTELALKYVKRALY-LLHLTC-------------------------GPSHPNTAATYINVAMMEEGL------GNVHVA 499 (1349)
Q Consensus 452 GdyeeALe~yerALe-l~e~l~-------------------------G~dhP~~a~al~NLA~iy~~l------GdydeA 499 (1349)
|+..+|+..++..+. ...... .......+.++..+|...... +.++++
T Consensus 198 g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~ 277 (352)
T PF02259_consen 198 GEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEI 277 (352)
T ss_pred CCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 999999999998888 332210 111234567777788877777 788899
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Q 000695 500 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 535 (1349)
Q Consensus 500 le~LekALei~ekllG~dhp~tA~a~~nLA~ay~~l 535 (1349)
+..|.+|+.+. +....+++.+|..+..+
T Consensus 278 ~~~~~~a~~~~--------~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 278 LKYYKEATKLD--------PSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHhC--------hhHHHHHHHHHHHHHHH
Confidence 99999998875 33455777777766543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.49 Score=55.38 Aligned_cols=132 Identities=17% Similarity=0.012 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 480 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a 480 (1349)
.-+.+.+..|++.+|...+.|.|+- +|..+.+...--.+++.+|+...-...+++.+..+ ..+-|-..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH
Confidence 3455667789999999999888763 56666777777788889999999888888887654 34567667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
.....+|..+...|-|++|.+...+|+++. +....+.+.+|.++...|++.++.+++.+.-...
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 777888999999999999999999999986 2345677889999999999999999988766544
No 257
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=2.6 Score=55.30 Aligned_cols=122 Identities=19% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT---- 471 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l---- 471 (1349)
..+|..||.+....|...+|++.|-+| |+ ...|...-.+..+.|.|++-.+|+.-|....+..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 457889999999999999999988776 22 2456667777778888888888887776543321
Q ss_pred -------------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000695 472 -------------------CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 532 (1349)
Q Consensus 472 -------------------~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay 532 (1349)
.|+++.. ...+|.-+...|.|+.|.-+|. ...-+..||..+
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHH
Confidence 1111111 1122333333333333333332 123355678888
Q ss_pred HhcCChhHHHHHHHHHHH
Q 000695 533 SLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 533 ~~lGdydEAie~lekALe 550 (1349)
..+|+|+.|....++|-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 889999999888777653
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.83 E-value=0.057 Score=43.08 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ek 512 (1349)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999987644
No 259
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.74 E-value=1.6 Score=60.12 Aligned_cols=158 Identities=20% Similarity=0.080 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC----C---------------
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D--------------- 411 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG----d--------------- 411 (1349)
...+|....+|..|+..|.+.+|+..|.+|+.+++.. .|+...+.++-.++.+...++ +
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3457888888999999999999999999999998876 778888888887776554321 1
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhcC---CCCch--hHHHHHHHHHHHH
Q 000695 412 -------------------------------------FNQATIYQQKALDINERELG---LDHPD--TMKSYGDLAVFYY 449 (1349)
Q Consensus 412 -------------------------------------yeeAle~~qKALeI~ErilG---~Dhpd--ta~ay~NLA~ly~ 449 (1349)
...-.+.+.+++.+|.+... ...|. .+.+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 11122356666666666531 11222 3456667777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 450 RLQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 450 ~lG--------------------dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
... .-.++..++.+++.+....+ +..+...+|..+|.+|..+|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 777 77888889999988754333 45667889999999999999999998888888877
Q ss_pred HHH
Q 000695 510 NQR 512 (1349)
Q Consensus 510 ~ek 512 (1349)
+..
T Consensus 475 ~~~ 477 (1185)
T PF08626_consen 475 LVP 477 (1185)
T ss_pred hcc
Confidence 643
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.73 E-value=0.059 Score=41.76 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 604 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 604 aelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+++|..+|.+|..+|++++|+.+|++|+++.++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467999999999999999999999999999764
No 261
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.70 E-value=2.1 Score=52.40 Aligned_cols=181 Identities=14% Similarity=-0.003 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQ 511 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdy-------deAle~LekALei~e 511 (1349)
..+..||.+++.+++|+.|..+|+-+..-+..- ......+.++-..|.++...+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 345679999999999999999999988866431 11233456666677777766643 477888898888887
Q ss_pred HhcC---CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhHHHHHHHH
Q 000695 512 RLLG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR---TQDAAAWLEYFESKAFEQQEAAR 585 (1349)
Q Consensus 512 kllG---~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~---T~eal~~La~L~qk~~eqAEAl~ 585 (1349)
+.-. ........+....+.++..+|.+.+|...+-+..... + ..+.. .+..+..++++. +.
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~---l-~~~l~~~~~alllE~~a~~~--------~~- 353 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEI---L-ESDLRPFGSALLLEQAAYCY--------AS- 353 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH---H-hhhhhhHhhHHHHHHHHHhh--------cc-
Confidence 6211 1122455677778888999999988887666555432 1 11111 222222222222 00
Q ss_pred hccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 586 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 586 ~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.....+. ......+-.+--+-.-|.-|...|....|+.+|.+|+.++..
T Consensus 354 ~~~~~~~--~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 354 LRSNRPS--PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred cccCCCC--ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0000000 000001122333444556689999999999999999999984
No 262
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.7 Score=53.16 Aligned_cols=227 Identities=11% Similarity=-0.010 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI----~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+|.-.....++++|+..|.+.|.- -++.. -+.-.+..+|+.+|...|++..--+......+.+.... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----NEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----hHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 3455555667788888777776643 11111 12345678999999999999887777777777766543 2
Q ss_pred hhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 477 PNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 477 P~~a~al~NLA~i-y~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
|.+..+...|-.. -.....++.-+..+...++...+- .........-..++.+|...|+|.+|+......+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 3344333333322 233456777788888777766432 0111122333457888999999999999998888777765
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHh
Q 000695 556 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 556 LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy-~aqGdyEEAle~yekALeL~ 634 (1349)
-+.-...+...+.--.+..-+.....++....++... ......+....-+..+.+++ ..-.+|.-|..||-.|++=+
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A--ns~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA--NSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh--hccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 3322222222221111222211111111111000000 00111122223345555554 66788999999998888866
Q ss_pred cccc
Q 000695 635 GNFY 638 (1349)
Q Consensus 635 ~kl~ 638 (1349)
..+.
T Consensus 237 t~l~ 240 (421)
T COG5159 237 TLLK 240 (421)
T ss_pred cccc
Confidence 5544
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.53 E-value=0.3 Score=56.41 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~-lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
+|..+.....+.+..+.|...|.+|+. +......+|...|.+.+. .++.+.|...|++++..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 344555666666668888888888852 123345678888999777 456666999999999864
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
+.....+......+...++.+.|..+|++++... ......-.+|......-...|+++.....++++.+++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2223445555577788999999999999998653 1111123455556666677788888888777777654
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.47 E-value=0.075 Score=40.80 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 604 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 604 aelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
++++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999998764
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.45 E-value=0.67 Score=58.68 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000695 369 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 443 (1349)
Q Consensus 369 dyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l-----GdyeeAle~~qKALeI~ErilG~Dhpdta~ay~N 443 (1349)
+...|..+++.+... ....+...+|.+|+.- .|.+.|+.+++.|..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 356677777776654 2344666777777654 689999999999987321110 1112346788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcC
Q 000695 444 LAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 444 LA~ly~~lG-----dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lG---dydeAle~LekALei~ekllG 515 (1349)
||.+|.... ++..|+.+|.+|-.. ++ ..+.+.||.+|.... ++..|..+|..|...-
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998853 678899999988764 23 346677898887655 5678999998887542
Q ss_pred CCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 000695 516 PDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~----lGdydEAie~lekALeI 551 (1349)
...+++++|.+|.. .-+...|..+++++.+.
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 24566778887763 34678888888888754
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.35 E-value=0.083 Score=42.15 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~Er 428 (1349)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
No 267
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=1.3 Score=53.55 Aligned_cols=189 Identities=14% Similarity=-0.012 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
.+.++..+.++....++..|..++.+++-.... +........++..++.++..-+....+..+.-+++..+.+. ..|
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ld 349 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SLD 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-ccc
Confidence 456777788888888888888888877644332 33455667788888888888888888888888887766542 222
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-----AATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~-----a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
...+..-.+||..+..+|..+.|+..++.++.......|-+.... +.++...+.-+ ...+.+.+.+++++|-.
T Consensus 350 -yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 350 -YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQS 427 (482)
T ss_pred -hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHH
Confidence 233455678899999999999999999999988765544332111 11111111112 45568889999999988
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhH---HHHHHHHHH
Q 000695 509 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPL---SVQHEQTTL 549 (1349)
Q Consensus 509 i~ekllG~dhp~tA~a~~nLA~ay~~lGdydE---Aie~lekAL 549 (1349)
+..++ ..|..+..+++-+|..|...|+.++ +...+++++
T Consensus 428 ~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 428 IFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 88776 5577788999999999999999865 334444444
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.32 E-value=1.5 Score=50.20 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=103.2
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTMKS 440 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l----GdyeeAle~~qKALeI~ErilG~Dhpdta~a 440 (1349)
...+++..|...+..+-.. ........++.+|..- .+..+|+.+|+++.. .....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3566777788777776541 1125667777777653 467888888885543 224567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 000695 441 YGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLHKALKC 509 (1349)
Q Consensus 441 y~NLA~ly~~----lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lG-------dydeAle~LekALei 509 (1349)
.++||.+|.. ..++.+|..+|++|... .++.-..+..++|.+|..-. +...|+.+|.+|...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999987 45899999999999874 23322445777888887642 223677777777654
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 000695 510 NQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 510 ~ekllG~dhp~tA~a~~nLA~ay~~----lGdydEAie~lekALeI 551 (1349)
. ...+.++||.+|.. ..++.+|..+|++|-+.
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 3 34667788888764 34889999999988753
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.29 E-value=0.089 Score=40.75 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+.+|+++|.+|..+|++++|+.+|++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3578999999999999999999999999874
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.16 E-value=5.4 Score=52.11 Aligned_cols=111 Identities=22% Similarity=0.108 Sum_probs=79.9
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 444 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NL 444 (1349)
+..+++..|+..+.+.++. ||....+...-|..+.++|++++|..++ +++.. .+.+ .-.++--|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~----~~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYG----LKGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----CCCC---chHHHHHH
Confidence 3566777777777777654 7777777778889999999999999443 34332 1222 23456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 000695 445 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 500 (1349)
Q Consensus 445 A~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAl 500 (1349)
-.||..++++++|..+|++++.. .|. -..+..+-++|.+-+.|.+-.
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999874 244 455666667777777776543
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.14 E-value=2.1 Score=51.63 Aligned_cols=171 Identities=18% Similarity=0.123 Sum_probs=103.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLDHPD 436 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~---lGdyeeAle~~qKALeI~ErilG~Dhpd 436 (1349)
+-..|....+|+.-+.+.+..-.+- ..+-.....+...+|.++.+ .|+.++|+..+..++.- +...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-------~~~~ 215 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-------DENP 215 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-------cCCC
Confidence 3345777778887777665443321 01122344456778888888 89999999988887543 2333
Q ss_pred hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000695 437 TMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 507 (1349)
Q Consensus 437 ta~ay~NLA~ly~~l---------GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekAL 507 (1349)
...+|..+|.+|..+ ..+++|+.+|+++.++- + ....-.|++.++...|.-.+...-+++..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------P-DYYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------c-cccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 456777788887643 12456666666666542 1 12334577888887776444443333333
Q ss_pred -HHHHHhcCC----CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 508 -KCNQRLLGP----DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 508 -ei~ekllG~----dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.+. .++|. +.......+..++.+....|++++|++.+++++..
T Consensus 287 ~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 287 VKLS-SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHH-HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222 22221 11223344455677888899999999999988855
No 272
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.98 E-value=1.9 Score=49.48 Aligned_cols=144 Identities=19% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000695 355 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 355 ~~LlelG~~yl~----qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~----lGdyeeAle~~qKALeI~ 426 (1349)
...+.++..|.. ..+..+|+.+|+.+.. .....+.+.||.+|.. ..|+.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 344444555543 2357778888875442 2345577889999987 45999999999999875
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 495 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lG-------dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~----lGd 495 (1349)
| ++.-..+.++||.+|..-. +...|+.+|.++.... ...+..+||.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 2 2211455788888887642 2236777777776542 34677889988864 347
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Q 000695 496 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 536 (1349)
Q Consensus 496 ydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lG 536 (1349)
+.+|..+|.+|.+.- + ...+++++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 899999999997652 1 45667778 555444
No 273
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.97 E-value=9 Score=46.25 Aligned_cols=224 Identities=14% Similarity=0.035 Sum_probs=132.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000695 365 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 444 (1349)
Q Consensus 365 l~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NL 444 (1349)
...|+++.|+.|...+.... +....+...+-...+..|+++.|+.+.+...... +.+.+-.+...+-..-
T Consensus 165 qr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLt 234 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLT 234 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHH
Confidence 46799999999999888764 3333344444455677899999999988776542 2233322222222222
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000695 445 AVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 523 (1349)
Q Consensus 445 A~ly~-~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~ 523 (1349)
|.... ..-+...|.....+++++ .|+.+-.-..-+..|...|+..++-.+++.+-+. .-||.++
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia- 299 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIA- 299 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHH-
Confidence 22222 224567777777777765 2444555556788899999999999999888765 4577654
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHH--HHHHHhccCCCchhhhhcCCC
Q 000695 524 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHL 601 (1349)
Q Consensus 524 a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~eq--AEAl~~~a~a~d~~ia~k~h~ 601 (1349)
.+|....--+.++.-++++-.+. .+.+++.... ..+.......++. +.+........ .
T Consensus 300 ------~lY~~ar~gdta~dRlkRa~~L~--slk~nnaes~---~~va~aAlda~e~~~ARa~Aeaa~r~---------~ 359 (531)
T COG3898 300 ------LLYVRARSGDTALDRLKRAKKLE--SLKPNNAESS---LAVAEAALDAGEFSAARAKAEAAARE---------A 359 (531)
T ss_pred ------HHHHHhcCCCcHHHHHHHHHHHH--hcCccchHHH---HHHHHHHHhccchHHHHHHHHHHhhh---------C
Confidence 44444444455666677665543 3445554332 2222211111111 11111100000 1
Q ss_pred cHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHH
Q 000695 602 SVSDLLDYINPSHDTK-GRNVSTLKRKTYVAKV 633 (1349)
Q Consensus 602 svaelL~~Lg~iy~aq-GdyEEAle~yekALeL 633 (1349)
.-..++..|+.+.... |+-.++...+-++++-
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1234577788888666 9999999999999875
No 274
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.43 Score=55.96 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
..++.-|-.-|.-|+...+|..|+..|.++|..- -.|..-.+..|.|-|.+.+.+|+|..|+.-+.+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3477788888999999999999999999998752 1233345778999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.|..+.+++.=|.++..+.++++|..++++.+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46667889999999999999999999999887765
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.56 E-value=0.92 Score=52.48 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000695 361 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMK 439 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~-lGdyeeAle~~qKALeI~ErilG~Dhpdta~ 439 (1349)
.+.....+..+.|..+|.+|+. .......+|...|.+.+. .++...|...|+.++..+ +....
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~~~~~ 71 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------PSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------TT-HH
T ss_pred HHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCCHH
Confidence 3455555668889999998862 233445678888888666 567777999999999875 22334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+.....++...++.+.|..+|++++... . .....-.+|..........|+++....+++++.++.
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45555678889999999999999998641 1 111134566666777778888888888888777764
No 276
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=18 Score=45.99 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
..+.|-|.-+++..+|..|+++|+..+..+-. .......+....+|+.+|..+.+.+.|.+++++|-+...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~------- 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR------- 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-------
Confidence 34567788889999999999999999875422 112345578899999999999999999999999977642
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 519 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
....+...+-.+....|.-.+|+........++..
T Consensus 426 -~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 426 -QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 22333444555666778888999888877776644
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.48 E-value=0.15 Score=39.15 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
+.+++.+|.+|+.+|++++|+.+|++++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999987
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.44 E-value=0.16 Score=39.20 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 604 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 604 aelL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
++++..+|.+|..+|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35789999999999999999999999999876
No 279
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.35 E-value=0.07 Score=64.79 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+..+-..+..++..++|+.|+.+|.+|+++ ++..+..+.+.+.++...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344556677888999999999999999977 7888889999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
+|..+.+|+.-|.++..++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4888899999999999999999999888877664
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.28 E-value=0.18 Score=41.77 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 446 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ 446 (1349)
.++..||.+|..+|++++|+..|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36789999999999999999999999987 4666677777764
No 281
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.26 E-value=3.3 Score=50.75 Aligned_cols=176 Identities=14% Similarity=-0.059 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHH
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 428 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdy-------eeAle~~qKALeI~Er 428 (1349)
.+..+|..++..++|+-|...|+.+..-+..- ......+.++...|.+++..+.. +....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34566888999999999999999888765421 22334566777777777777643 3777888888888877
Q ss_pred hcC---CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 000695 429 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 500 (1349)
Q Consensus 429 ilG---~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~---~a~al~NLA~iy--~~lGdydeAl 500 (1349)
... .......++....+.++...+.|.+|...+-+...... ..... .+-.+-.+|.+| .....
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~----- 358 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNR----- 358 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCC-----
Confidence 322 12235667778888889999999888877766665421 01111 333444455555 11100
Q ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 501 RYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 501 e~LekALei~ekllG~d-hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
...+.. ....+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 359 -----------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 359 -----------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -----------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000 122333344456788899999999999999999885
No 282
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=2.8 Score=49.51 Aligned_cols=227 Identities=10% Similarity=-0.029 Sum_probs=127.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-Cch----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 402 LAVVLYHTGDFNQATIYQQKALDINERELGLD-HPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 402 LA~ay~~lGdyeeAle~~qKALeI~ErilG~D-hpd----ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.++......++.+++..+.+.+...+ |.. +.. --.+..+++..|...|++++-..+.......+..+. .
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~---~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K 83 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQ---GASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K 83 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhc---cccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence 34444445556667776666655311 111 111 124567899999999999988887777776665542 2
Q ss_pred hhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 477 PNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 477 P~~a~al~NLA~iy~-~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
+..+.+...|-.++. .-+..+.-+.++.++++...+-- .....-..-..|..+|...++|.+|+......+.-+++.
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl 161 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL 161 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 333444333333333 33456677778888887764421 111122233468899999999999999998888877765
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHh
Q 000695 556 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 556 LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy-~aqGdyEEAle~yekALeL~ 634 (1349)
-+....-....+.--.++.......+++....++... .+....+.+...+....+++ ....+|..|..||-+|.+=+
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A--naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA--NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh--cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 3332222222222222332222233333222111111 11111223334445555554 56689999999999999988
Q ss_pred cccc
Q 000695 635 GNFY 638 (1349)
Q Consensus 635 ~kl~ 638 (1349)
..+.
T Consensus 240 ~s~~ 243 (411)
T KOG1463|consen 240 DSLD 243 (411)
T ss_pred cccC
Confidence 8766
No 283
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.21 E-value=19 Score=41.07 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l-GdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
.+..+|+++.+.|+|++.+.++.+++... ......=.+.|+.+|-.. |....+...+..... +..+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~---~~~~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ---KEENKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh---hhcccch
Confidence 46678899999999999999999998761 122333455566665322 222222222221111 1111111
Q ss_pred chhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHHC-----C-----CHHHHH
Q 000695 435 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEGL-----G-----NVHVAL 500 (1349)
Q Consensus 435 pdta~ay~NLA~ly~~lGdy-eeALe~yerALel~e~l~G~d--hP~-~a~al~NLA~iy~~l-----G-----dydeAl 500 (1349)
.... ..+-....+. ++=..++..++.+....+-+. .+. .+..+-..|..|.-+ | -.+.|.
T Consensus 73 ~~~~------~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQV------KLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 1111 1111111111 223345555565554433211 111 122223345444421 1 136899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHhcC
Q 000695 501 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 501 e~LekALei~ekllG~dhp~tA~a~~nLA~ay~-~lGdydEAie~lekALeI~kk~LG 557 (1349)
..|++|+++....+.+.||.......|.+..|. .+|+.++|++..++|++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999889999999888888888775 589999999999999988776554
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.97 E-value=0.54 Score=51.18 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=54.1
Q ss_pred CchhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC----HHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN----VHVALRYLHKA 506 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdy---eeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGd----ydeAle~LekA 506 (1349)
+|.....+++.|.++..+.++ .++.++++.|+.-++..+. -+|....++.++|.+|..++. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466678888888888887655 4577777777766554432 257778899999999987653 45777788887
Q ss_pred HHHHHHh
Q 000695 507 LKCNQRL 513 (1349)
Q Consensus 507 Lei~ekl 513 (1349)
.+.+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.96 E-value=0.095 Score=41.60 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 000695 418 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 459 (1349)
Q Consensus 418 ~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe 459 (1349)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37788887 68889999999999999999999963
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.92 E-value=0.21 Score=41.39 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 488 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~ 488 (1349)
.++..||.+|..+|++++|+++|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36788999999999999999999999985 4555667766664
No 287
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.71 E-value=1.6 Score=47.68 Aligned_cols=158 Identities=13% Similarity=0.124 Sum_probs=99.5
Q ss_pred cCChHHHHH-HHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000695 367 KGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKS 440 (1349)
Q Consensus 367 qGdyeEAle-l~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~-----lGdyeeAle~~qKALeI~ErilG~Dhpdta~a 440 (1349)
.|+|-+++. -|++|..++...+.. .......+.+|..++. .+++..|++++..|... ....+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCde--n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDE--NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHH
Confidence 345555543 566666666665433 2344556666665443 45788899999888763 34567
Q ss_pred HHHHHHHHHHc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---------------------
Q 000695 441 YGDLAVFYYRL-----QH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG--------------------- 492 (1349)
Q Consensus 441 y~NLA~ly~~l-----Gd--yeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~--------------------- 492 (1349)
..++|.+++.- ++ ..+|++|+.+|.++- ...+.++|..+|..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAEL 177 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhh
Confidence 77888887643 23 578999999887631 12333344444432
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHhc
Q 000695 493 ---LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 493 ---lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~l----GdydEAie~lekALeI~kk~L 556 (1349)
..+.+.|+++..+|.++. ...+..|+.+.|..- .+.++|..+-.+|.+|.+.+-
T Consensus 178 ~~~~kDMdka~qfa~kACel~----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 355667777766666542 345667778877642 467889999999998877654
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.62 E-value=0.26 Score=37.99 Aligned_cols=30 Identities=40% Similarity=0.613 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.++..+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999986
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.57 E-value=0.13 Score=60.27 Aligned_cols=98 Identities=23% Similarity=0.145 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+......+...+..|.++.|++.|..++.+ ++..+..|...|.++..+++...|+.-|..|+.+
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-------- 177 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-------- 177 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------
Confidence 334455566677888999999999888865 6788888899999999999999999999999887
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.++.+..|-.-+.....+|+|++|-.+++.++.+
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 4667777777888888899999999888888774
No 290
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.47 E-value=0.93 Score=53.75 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHH
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 414 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyee 414 (1349)
...+..++..|+.++.+++|+.|...|.+|..+...+||..|..+..+++..|..++..+++..
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999999999998766543
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=6.9 Score=45.78 Aligned_cols=134 Identities=19% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000695 400 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 479 (1349)
Q Consensus 400 ~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~ 479 (1349)
..-+.-....|++.+|...+..++... ++...+...||.+|...|+.+.|...+...=.- .+-..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~ 202 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKA 202 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhH
Confidence 344556678899999999999999873 344677889999999999999998877552111 00011
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCC
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 559 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~d 559 (1349)
...+..--.++.......+... +++.+. ..|......+.||..|...|++++|++++- .++++-.|..
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~-l~~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~ 270 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQD-LQRRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFE 270 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHH-HHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhccccc
Confidence 1111000011111111111111 111111 123345667788999999999999988774 4444444433
Q ss_pred C
Q 000695 560 D 560 (1349)
Q Consensus 560 h 560 (1349)
+
T Consensus 271 d 271 (304)
T COG3118 271 D 271 (304)
T ss_pred C
Confidence 3
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.43 E-value=43 Score=43.22 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKA 380 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeA 380 (1349)
..-.++.+.|..+.....+++|.++|.+.
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456677788888888888888888765
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.40 E-value=3.5 Score=52.37 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=91.7
Q ss_pred HHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 000695 355 RQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALD 424 (1349)
Q Consensus 355 ~~LlelG~~yl-----~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lG-----dyeeAle~~qKALe 424 (1349)
...+.+|.+|+ ...+.+.|+.+|+.+..-+.... +.....+.+.||.+|.... ++..|+.+|.+|-.
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 33444454444 34589999999999987211110 1113347888999998853 67889999988876
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHH
Q 000695 425 INERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVH 497 (1349)
Q Consensus 425 I~ErilG~Dhpdta~ay~NLA~ly~~lG---dyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l----Gdyd 497 (1349)
. ....+.+.||.+|..-. ++..|.+||..|... .| ..+++++|.+|..- .+..
T Consensus 322 ~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 322 L----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred c----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHH
Confidence 4 13457788999887665 567899999888763 23 45677888888743 4688
Q ss_pred HHHHHHHHHHHH
Q 000695 498 VALRYLHKALKC 509 (1349)
Q Consensus 498 eAle~LekALei 509 (1349)
.|..+|.+|.+.
T Consensus 382 ~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 382 LAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHc
Confidence 999999998875
No 294
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.36 E-value=9.5 Score=48.31 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=33.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 489 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 489 iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
++...++|.+|..+.++-=+. .-.+|+..|+-+....+|++|.+.|.+|-
T Consensus 782 lHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred heeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 444567777776554432221 23456777888888899999988887664
No 295
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=4.9 Score=50.74 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
-..|++.|..++...+|..+++.|...+...-. ...+...+.....|+.||..+.+.+.|.++++.|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 456888999999999999999999999876532 2345567889999999999999999999999999665
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
++........+-.....-|.-++|+.+........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 22233334445555666788899998887776654
No 296
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.21 E-value=0.66 Score=50.48 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC----HHHHHHHHHHH
Q 000695 392 HRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH----TELALKYVKRA 464 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdy---eeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGd----yeeALe~yerA 464 (1349)
+|..+..+++-|.++.++.++ .++..+++.|+.-++..+.. +|+...++++||.+|..++. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 566677888888888776554 34666666666655554433 46778899999999987664 34566666666
Q ss_pred HHHHHH
Q 000695 465 LYLLHL 470 (1349)
Q Consensus 465 Lel~e~ 470 (1349)
...++.
T Consensus 100 ~~~Fqk 105 (186)
T PF06552_consen 100 TEYFQK 105 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 297
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.14 E-value=3.5 Score=50.03 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c-CCCCchhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHH
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERE----L-GLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYL 467 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri----l-G~Dhpdta~ay~NLA~ly~~lGdy---eeALe~yerALel 467 (1349)
+..|+.-|++.++...|.+|+..+..|=+.+-.+ + +.|+ .+..-..+-+||+.+.+. ..|..-+.+|-..
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN--yallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN--YALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc--hhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 3345556677777777777777776665543321 0 1222 344445678899988764 5677666666666
Q ss_pred HHHhcCCC-----------ChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 468 LHLTCGPS-----------HPNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 468 ~e~l~G~d-----------hP~~---a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
+...||.+ .|.. ...+..-|.+.+.+|+-++|.++|+.|.....++
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 66666654 3433 3455667999999999999999999998877554
No 298
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=91.99 E-value=5.1 Score=55.43 Aligned_cols=230 Identities=14% Similarity=0.036 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC---------------------
Q 000695 395 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH--------------------- 453 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGd--------------------- 453 (1349)
.++..-.+|..|+..|++.+|+.+|..|+.+++. ..|+-..+.++-.++.+..-++.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 4556677899999999999999999999999876 45666666666666544332110
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHC
Q 000695 454 -----------------------------------TELALKYVKRALYLLHLTC---GPSHPN--TAATYINVAMMEEGL 493 (1349)
Q Consensus 454 -----------------------------------yeeALe~yerALel~e~l~---G~dhP~--~a~al~NLA~iy~~l 493 (1349)
...-.+.+++++.++.+.. .+..|. .+.+...++.++..+
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 1111234455555554432 111233 345666777777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 494 G--------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 494 G--------------------dydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
. .-.++..++.+|+.+....+ ...+....|..+|.+|..+|-..++.-+++.++..+-
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 7 67888899999988765433 3455678899999999999999999988888887764
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhhhhc--CCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 000695 554 AKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 631 (1349)
Q Consensus 554 k~LG~dhp~T~eal~~La~L~qk~~eqAEAl~~~a~a~d~~ia~k--~h~svaelL~~Lg~iy~aqGdyEEAle~yekAL 631 (1349)
..+...+......+..+...+.-... ... ...+...... ...-..+++..+-.+..+.|++.-+..+.-..|
T Consensus 477 ~~l~~~~~s~~~lL~~~~~~Ygi~~~-~~~-----~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL 550 (1185)
T PF08626_consen 477 PGLIHWHQSYRSLLEELCKGYGISLD-PES-----SSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLL 550 (1185)
T ss_pred cccCCcchHHHHHHHHHhccCcccCC-ccc-----cccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43311121111111111111110000 000 0000000000 111234566666667788999999988876666
Q ss_pred HHh
Q 000695 632 KVK 634 (1349)
Q Consensus 632 eL~ 634 (1349)
+-+
T Consensus 551 ~~~ 553 (1185)
T PF08626_consen 551 RTY 553 (1185)
T ss_pred HHH
Confidence 543
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.88 E-value=0.15 Score=40.49 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000695 460 YVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 501 (1349)
Q Consensus 460 ~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle 501 (1349)
+|++||++ +|....+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788875 68888999999999999999999863
No 300
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=5.4 Score=48.19 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=90.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000695 489 MEEGLGNVHVALRYLHKALKCNQRLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 566 (1349)
Q Consensus 489 iy~~lGdydeAle~LekALei~ekllG~d--hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~ea 566 (1349)
.++.++++.+|..+-...+.-. ...... +...+.+|+.+..+|...|+...-..++..-+.. ..++.+.......
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qavL 211 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQAVL 211 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHHHH
Confidence 3445678888877766655432 111111 2346788999999999999977666655544433 3566555555555
Q ss_pred HHHHHH--HHHHhHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 567 AAWLEY--FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 567 l~~La~--L~qk~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
..||.. +-...++++..+.....-+. .+. ...++..++++|.+..-+++|..|.+++-+|++..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe--~~s--nne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPE--AAS--NNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCcc--ccc--cHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 566653 34444555544443333232 211 2268899999999999999999999999999987653
No 301
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.69 E-value=10 Score=48.10 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 400 SLLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 400 ~~LA~ay~~lGdyeeAle~~qK------ALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
..+|.++..+|+|.+|..+|.+ |++++.. .-++.++.-|...|.-++-..+.++-.+-...+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~-- 703 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI-- 703 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--
Confidence 3578888888999999888865 3444321 223456666666676666555555433332222
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHH------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 474 PSHPNTAATYINVAMMEEGLGNVHVALRY------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 474 ~dhP~~a~al~NLA~iy~~lGdydeAle~------LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
..|.. -|.++...|+.++|+.. .+-++++.+++.- .....+..+|..+..+..+..|.+.|+
T Consensus 704 -kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 704 -KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred -CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHH
Confidence 23332 35667777888887764 3445555544311 112333344444445555554444443
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.61 E-value=7.2 Score=47.05 Aligned_cols=149 Identities=17% Similarity=0.064 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---------------------CChhhHHHHHHHHHHHHhcCC
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLYHTGD 411 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~---------------------dhp~~A~ay~~LA~ay~~lGd 411 (1349)
-+..|+.++.++..+|++..|.+++++||-.+++.+.. .+.....++......+.++|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 35678899999999999999999999999887744211 233445566677778888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000695 412 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 491 (1349)
Q Consensus 412 yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~ 491 (1349)
+..|+++++-.+.+ .++ .+-.-+++.+=.+..+.++|+--+++++..........-..-| ...+.+|.++.
T Consensus 119 ~rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~aLA~~ 189 (360)
T PF04910_consen 119 WRTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIALAYF 189 (360)
T ss_pred HHHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHHHHHH
Confidence 99999988877765 222 0233445556666677888887777776655421100000012 34456778888
Q ss_pred HCCCH---------------HHHHHHHHHHHHHH
Q 000695 492 GLGNV---------------HVALRYLHKALKCN 510 (1349)
Q Consensus 492 ~lGdy---------------deAle~LekALei~ 510 (1349)
.+++- +.|...+++|+...
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 88887 89999999998875
No 303
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.40 E-value=0.54 Score=59.61 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=61.8
Q ss_pred cccceeccCCCCCCCCccccCccccccccCCCCcccCCCCCCCCCCCCCCCC------CCCCCCCCCccCCccCCCCCCC
Q 000695 1053 ASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYP------SPPSTPNMMQPLPFMYPPYTQP 1126 (1349)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 1126 (1349)
++|++=+-++||-|++.|+++.-|- -=|+-.+||.-|++|.| +|||+|-+|-||-=+-|=|-.|
T Consensus 547 pPPlpggag~PPPPpplPg~aG~PP----------pPppppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkp 616 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIAGGPP----------PPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKP 616 (1102)
T ss_pred CCCCCCCCCCCccCCCCCcccCCCC----------ccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCc
Confidence 4555555567888888888765431 11333445554444441 3455555566643344444333
Q ss_pred CCCcCCCCCcccCCCCCCCccccccCCCCCCCccCCCCCCCCcccccCCCCCccccCCCcccccccccCCCCC
Q 000695 1127 QGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVPPPVVEPILDPIMQPKAQSGDLDS 1199 (1349)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1349)
--++--.-||- .|.|-- -+--|.-=-.+|-+|.-=-|.-.-...+=-.--..+|+|+.+..+.
T Consensus 617 KK~~k~e~~Mr-------r~nW~k---I~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~ 679 (1102)
T KOG1924|consen 617 KKVYKPEVPMR-------RFNWSK---IVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGG 679 (1102)
T ss_pred cccCCCCCccc-------cCCccc---cCccccCccceeeecchhhccchHHHHHHHHHhhcccccccccccc
Confidence 44544333332 356842 1112222246899997654443332222111222355665555443
No 304
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.20 E-value=33 Score=39.45 Aligned_cols=188 Identities=15% Similarity=0.050 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~-lGdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
+..+|++.-+.++|++.+.+..+++.... + ......=.+.|..+|-. .|....+.+.... ++-.+...|.+
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~-- 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE-- 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch--
Confidence 45678888899999999999998876421 0 12333445666666643 3555555554443 22221111211
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--hh-HHHHHHHHHHHHHH-----CCC-----HHHHHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH--PN-TAATYINVAMMEEG-----LGN-----VHVALRY 502 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh--P~-~a~al~NLA~iy~~-----lGd-----ydeAle~ 502 (1349)
.. ..+..-|. ..=-++=..++..++.+....+-+.. +. .+..+-..|..|.- .|+ .+.|...
T Consensus 76 ~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 11111111 11123344566777777665543321 11 22222233444432 222 4589999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHhcC
Q 000695 503 LHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 503 LekALei~ekllG~dhp~tA~a~~nLA~ay~~-lGdydEAie~lekALeI~kk~LG 557 (1349)
|++|+++....+.+.||.......|.+..|.. +++.++|.++.++|++-....+.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999998877889999888888888887765 69999999988888877654443
No 305
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.07 E-value=20 Score=42.43 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=92.3
Q ss_pred CChhhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000695 391 YHRMTAGAYSLLAVVLYHTGD-----FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 465 (1349)
Q Consensus 391 dhp~~A~ay~~LA~ay~~lGd-----yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerAL 465 (1349)
.+|....++..+....-..-. ........++-|.++++.+.. +|+....+..+-.++....+-++..+-+++++
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 466666666666555444322 223333344444444443322 33333333333333345556666666677766
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHhc
Q 000695 466 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALSLM 535 (1349)
Q Consensus 466 el~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d----------hp~tA~a~~nLA~ay~~l 535 (1349)
.. .++.+..-..|...-......-.+......|.++|+......... ......++.+++..+...
T Consensus 93 ~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 93 FK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 53 122333434443333333344568899999999998876654332 334567778888888999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCC
Q 000695 536 EAYPLSVQHEQTTLQILRAKLGPDD 560 (1349)
Q Consensus 536 GdydEAie~lekALeI~kk~LG~dh 560 (1349)
|-.+.|+..++-.+++- .+.|..
T Consensus 168 G~~E~Ava~~Qa~lE~n--~~~P~~ 190 (321)
T PF08424_consen 168 GYTERAVALWQALLEFN--FFRPES 190 (321)
T ss_pred CchHHHHHHHHHHHHHH--cCCccc
Confidence 99999999999888763 344444
No 306
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=6 Score=48.17 Aligned_cols=179 Identities=15% Similarity=0.014 Sum_probs=112.4
Q ss_pred hCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 388 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 388 lG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.|.+-..-....+.-|.++....++..|..+..++.-.+.. +.........+..++.++.+-+.--.++.+.-+++..
T Consensus 265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 34444555666777899999999999999999888655432 2223345566777888887777778888888888877
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHhcCChhHHH
Q 000695 468 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-----QTAASYHAIAIALSLMEAYPLSV 542 (1349)
Q Consensus 468 ~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp-----~tA~a~~nLA~ay~~lGdydEAi 542 (1349)
+.... -+ -..+.+-.++|..+..+|..+.|+..+..|+....-.-|-+.. ..+.++..-+.-+ ...+++.+.
T Consensus 343 ~sey~-ld-yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~ 419 (482)
T KOG4322|consen 343 RSEYS-LD-YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP 419 (482)
T ss_pred HHHhc-cc-hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence 66542 12 2234555678999999999999999999999876433221111 1122222222222 445666677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000695 543 QHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 543 e~lekALeI~kk~LG~dhp~T~eal~~La~L 573 (1349)
.++++|-+++.+. .-|....++...+++.
T Consensus 420 ~~L~~A~~~f~kL--~~he~ildv~yf~A~~ 448 (482)
T KOG4322|consen 420 RYLDLAQSIFYKL--GCHEKILDVTYFSAYQ 448 (482)
T ss_pred HHHHHHHHHHHHc--cchHHHHHHHHHHHHH
Confidence 7777777666554 2344444444444333
No 307
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.93 E-value=14 Score=43.88 Aligned_cols=127 Identities=11% Similarity=0.006 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000695 371 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 450 (1349)
Q Consensus 371 eEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~ 450 (1349)
+.-+.+|++||+. ++.....+..+-.++....+-++....+++++.. ....+.+...|.+.-...+.
T Consensus 48 E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhc
Confidence 3445566666654 3333334433444445666777777778887765 23455566666666555566
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 451 LQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 451 lGdyeeALe~yerALel~e~l~G~d----------hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.-.+...+..|.++|..+....... ....+.++.+++..+...|..+.|+..++-.+++.
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 6778999999999998876654322 23456778888999999999999999999999886
No 308
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.92 E-value=3.7 Score=53.53 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000695 409 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 488 (1349)
Q Consensus 409 lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~ 488 (1349)
.++|.+|+....+.+.- ||....+...-|..+.++|++++|+.+++ +++. ..+ + .-.++..+-.
T Consensus 22 ~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~---~~~-~---D~~tLq~l~~ 85 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLE-ALYG---LKG-T---DDLTLQFLQN 85 (932)
T ss_pred hHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhcc---CCC-C---chHHHHHHHH
Confidence 35666666666665543 78888888888999999999999995543 3332 122 2 2356677888
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhH
Q 000695 489 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 540 (1349)
Q Consensus 489 iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydE 540 (1349)
+|..++++++|..+|++++..+ |. -..++.+=.+|.+.+.|.+
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 21 2333444556666666654
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=16 Score=45.83 Aligned_cols=190 Identities=9% Similarity=0.019 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE------ 429 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri------ 429 (1349)
-++..++.+...|+.+.|+.+++.++.... ..-...++..+|.++..+.+|..|..++........-.
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Y 342 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTY 342 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHH
Confidence 355567777778888889999998887322 12345688899999999999999888887766553210
Q ss_pred -------------c-CCCCchhHHHHHHHHHHHHHc-------CC--HHHHHHH---------------HHHHHHHHHHh
Q 000695 430 -------------L-GLDHPDTMKSYGDLAVFYYRL-------QH--TELALKY---------------VKRALYLLHLT 471 (1349)
Q Consensus 430 -------------l-G~Dhpdta~ay~NLA~ly~~l-------Gd--yeeALe~---------------yerALel~e~l 471 (1349)
. +..+.+.+..+..-+..+.+. .+ ..+|.++ |.+.+..|...
T Consensus 343 fa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf 422 (546)
T KOG3783|consen 343 FAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGF 422 (546)
T ss_pred HHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhc
Confidence 0 011111122222222222211 00 0111110 11111111100
Q ss_pred c-----------------CC-CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000695 472 C-----------------GP-SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 533 (1349)
Q Consensus 472 ~-----------------G~-dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~ 533 (1349)
- .. +.-+..--+..+|.++..+|+-..|..+|..+++-. .....++-....++|.||.+|.
T Consensus 423 ~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~ 501 (546)
T KOG3783|consen 423 SRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYW 501 (546)
T ss_pred ccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHH
Confidence 0 00 111123335567999999999999999999888663 2234555667789999999999
Q ss_pred hcCC-hhHHHHHHHHHHHHH
Q 000695 534 LMEA-YPLSVQHEQTTLQIL 552 (1349)
Q Consensus 534 ~lGd-ydEAie~lekALeI~ 552 (1349)
.+|. +.+|..++.+|.+.+
T Consensus 502 ~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 502 DLGGGLKEARALLLKAREYA 521 (546)
T ss_pred hcccChHHHHHHHHHHHhhc
Confidence 9998 999999999997654
No 310
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.78 E-value=30 Score=39.44 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHHHHHHcC--------------CH
Q 000695 399 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH----------PDTMKSYGDLAVFYYRLQ--------------HT 454 (1349)
Q Consensus 399 y~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh----------pdta~ay~NLA~ly~~lG--------------dy 454 (1349)
-..+..+|+..++..+|+..+++=+..+....+... .....-|.-+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 345678899999999999999998888877765511 112333445565554433 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000695 455 ELALKYVKRALYLLHLTCG-PS-------------------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 514 (1349)
Q Consensus 455 eeALe~yerALel~e~l~G-~d-------------------hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekll 514 (1349)
..|-.+...-...+..+.. ++ .+.....+..+.........-...++++.+|++.+...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~- 171 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY- 171 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence 3333333333333333320 00 00000011111111112233456789999999988665
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
+ .......+...+|..|...|+|++|+.+|+.+...+++
T Consensus 172 ~-~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 172 G-QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred c-cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2 23446677789999999999999999999999766643
No 311
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.67 E-value=8.8 Score=47.97 Aligned_cols=176 Identities=19% Similarity=0.132 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHhc
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDINEREL 430 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~---~qKALeI~Eril 430 (1349)
+..+.+.+..+...|+..+|-.+-.++..+++........... .+|+..-+++++..- +++.-.++.+.+
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~-------~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll 358 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK-------LLYFALADYEESRYDDNKEKKVHEIYNKLL 358 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHhcccchhhhhHHHHHHHH
Confidence 3445555666667777666655555555555433211112222 333333344444333 344444444443
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+..+.+...+|.++-.+-.+..-...|...|.+|.+.-. +..|..++.++ +=|...++..-|.+.|+-.|+.+
T Consensus 359 ~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 359 KIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred hhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc
Confidence 333444445566666666666677888888888876422 22343333333 12667899999999999888765
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 511 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 511 ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
.+.+.....| ...+..+++-..|..+|++++.-
T Consensus 432 -----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 432 -----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHhc
Confidence 4556555554 45567788888899888888753
No 312
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.56 E-value=0.37 Score=58.83 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=81.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 480 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a 480 (1349)
.-|.-++..++|+.|+.+|-|||++ ++..+..+.+-|.++...++|..|+.-+.+|+++ .|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 4456667788999999999999997 6777888889999999999999999999999985 48888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+|..-|.++..++++.+|+..|+....+.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 899999999999999999999998877664
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.38 E-value=20 Score=48.56 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=56.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHhcCCCcHH
Q 000695 449 YRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC------NQRLLGPDHIQ 520 (1349)
Q Consensus 449 ~~lGdyeeALe~yerALel~e~l~G--~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei------~ekllG~dhp~ 520 (1349)
.+.|.|.+|+.+|.--.+..+.++. .+|-..-.-+..-|.+|...|+.++|+..|+.+... ..+.. ...-.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHH
Confidence 4566777777766544443333220 012222223445678889999999999988766543 32221 11122
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
.......|+.-+..++++-+|.+.+.+.+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 23333556777778888887777665554
No 314
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=21 Score=47.61 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------
Q 000695 356 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------- 428 (1349)
Q Consensus 356 ~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er------- 428 (1349)
.+-.+|...++.|...+|++-|-+| ++| ..|...-.+....|.|++-+.|+..|-.-.++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 4556677788888888888877654 222 25666666777778888877777666443221
Q ss_pred ----------------hcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000695 429 ----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492 (1349)
Q Consensus 429 ----------------ilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~ 492 (1349)
+.|+++.+ ....|.-++..+.|+.|.-+|.. ..-+..||..+..
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVY 1232 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence 11222111 12234444444444444433322 2234556777777
Q ss_pred CCCHHHHHHHHHHHHHHH--H---------------HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 493 LGNVHVALRYLHKALKCN--Q---------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 493 lGdydeAle~LekALei~--e---------------kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
+|+|+.|....++|-... + ++.|-+-...+.-+-.|-..|...|-|++-+.+++.++-+-
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 778877777766653321 0 11122212223334455666777777777776666665443
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.35 E-value=2.1 Score=40.87 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eri 429 (1349)
.++..++.|.-++.+.+.++|+..++++|.... +.++...++..|..+|...|+|.+++.+..+=+++.+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677888888899999999999999998753 456778889999999999999999999999888887763
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.25 E-value=5.5 Score=44.33 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc
Q 000695 372 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 451 (1349)
Q Consensus 372 EAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~l 451 (1349)
.+++-|.++++++.++-...+++.- ..++..-+.-++..-++.+.+.+..+|.+ ..+++.+
T Consensus 59 ~~le~Y~kCielAa~Iq~i~~~e~k------------~~R~~a~~~s~~~l~~L~~~tk~S~dP~l-------lYy~Wsr 119 (203)
T PF11207_consen 59 EALEKYSKCIELAAQIQHIKQKERK------------TDRFRALLHSYQELERLQEETKNSQDPYL-------LYYHWSR 119 (203)
T ss_pred HHHHHHHHHHHHHhcCeeechHhHH------------HHHHHHHHHHHHHHHHHHHHHccCCCccH-------HHHHhhc
Confidence 4667788888887765322222211 11111112222333334455556667653 2334444
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000695 452 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 531 (1349)
Q Consensus 452 GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~a 531 (1349)
-.-+.|+.-|.++ -|......+.....||..|. ..+.++|+.+|.++|++.. .++.....++..||.+
T Consensus 120 ~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 120 FGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASI 187 (203)
T ss_pred cCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHH
Confidence 4446666555433 24444566788888888887 5688999999999999863 3323345778889999
Q ss_pred HHhcCChhHHHH
Q 000695 532 LSLMEAYPLSVQ 543 (1349)
Q Consensus 532 y~~lGdydEAie 543 (1349)
|..+|+++.|.-
T Consensus 188 ~~~~~~~e~AYi 199 (203)
T PF11207_consen 188 YQKLKNYEQAYI 199 (203)
T ss_pred HHHhcchhhhhh
Confidence 999999998863
No 317
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=53 Score=40.21 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=101.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCC--CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 361 SKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~eeALel~eqvlG~--dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
...++.+.+|.+|..+-...+.-.. ++.. .+--.+.+|+.+..+|...|+...-..++..-+.. ..++.|....+
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qa 209 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQA 209 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHH
Confidence 3345567889998888776654321 1111 12345778888999999999977666666655554 34565666667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
...+.|=..|...+.|+.|..+..++..--. ......+..++.+|.+..-+++|..|.+++.+|+...
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~----~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEA----ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccc----cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 7777888899999999999888776642110 1123678888899999999999999999999998865
No 318
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.70 E-value=3.3 Score=50.02 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--hc
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR--LL 514 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ek--ll 514 (1349)
+-.++..||..|...|+++.|+++|-++.+.+... -.++..+.|+-.+-..+|+|..-..+-.+|...... ..
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 56788999999999999999999999988876442 346777888888888899998888888777665200 00
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000695 515 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 548 (1349)
Q Consensus 515 G~dhp~tA~a~~nLA~ay~~lGdydEAie~lekA 548 (1349)
...-+....|+ -|.+...+++|..|..++-.+
T Consensus 224 ~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 AQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 01111223444 455555666999988887654
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.38 E-value=4.6 Score=38.62 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 483 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 483 l~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
...-|.-++...+.++|+..+++||+.. .+.+....++-.|..+|...|+|++++.+..+=+++..+.-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555667888899999999999876 33456677788899999999999999999887777766543
No 320
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.09 E-value=17 Score=44.21 Aligned_cols=143 Identities=16% Similarity=0.056 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHh
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV--LYHTGDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~a--y~~lGdyeeAle~~qKALeI~Eri 429 (1349)
..+...+..+..++..++|..|..++...+.. +- .... ...+..|+.+ ++..-++.+|.+++++.+.....
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~--~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~- 201 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR---LP--GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA- 201 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC--chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh-
Confidence 34556777888899999999999999998764 21 1222 4455555544 46688899999999987764211
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
-......+..+..+. +++..+.............-....+..+...|.=-...|+|+.|+..+=+++++
T Consensus 202 ----l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 202 ----LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred ----hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 000011112222221 222222222221111000001223333333444445689999999999999988
Q ss_pred HHH
Q 000695 510 NQR 512 (1349)
Q Consensus 510 ~ek 512 (1349)
..+
T Consensus 271 ~~Q 273 (379)
T PF09670_consen 271 LAQ 273 (379)
T ss_pred HHH
Confidence 643
No 321
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.00 E-value=6.3 Score=47.79 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC------Chhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 357 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY------HRMT----AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 357 LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~d------hp~~----A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
.+.-|..++.+++|..|..-|..||+++.+..-.. ..++ ..+...|..||..+++.+.|+.+..+++.+
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l- 257 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL- 257 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-
Confidence 34445566677778777777877777766432111 1111 223568999999999999999999999876
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
+|.+..-+..-|.|+..+.+|.+|-+-+--|..++-...|
T Consensus 258 -------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 258 -------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred -------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4666777778899999999999999888888877765544
No 322
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.98 E-value=0.81 Score=55.57 Aligned_cols=138 Identities=22% Similarity=0.247 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhc----CCCCchhHHHH--H----HHHHHHHHcCCHHHHHHHHHH
Q 000695 395 TAGAYSLLAVVLYH-TGDFNQATIYQQKALDINEREL----GLDHPDTMKSY--G----DLAVFYYRLQHTELALKYVKR 463 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~-lGdyeeAle~~qKALeI~Eril----G~Dhpdta~ay--~----NLA~ly~~lGdyeeALe~yer 463 (1349)
...++-.||..|.. ..|.-.|+.++++|.+....-. .........+| . +...+..-.++.+ ++--+
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmq 320 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQ 320 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHH
Confidence 35566667766653 3357788899999988765410 01111111111 1 1111222222222 23346
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Q 000695 464 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 535 (1349)
Q Consensus 464 ALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~l 535 (1349)
+|-+.+.++|+.|+++.......|-+|...|+++..++++.-||++.++.+.+-++.++..+...|.++..+
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 778889999999999988777889999999999999999999999999999999999999998888877543
No 323
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=86.84 E-value=6.7 Score=40.51 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc---h----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 399 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP---D----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 399 y~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp---d----ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
+.++|...+..+++-.|+-+|++|+.+.++....... + ......|||.++..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999886321111 1 13456799999999999999999999988766554
Q ss_pred c
Q 000695 472 C 472 (1349)
Q Consensus 472 ~ 472 (1349)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 324
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=4.3 Score=53.90 Aligned_cols=13 Identities=62% Similarity=1.040 Sum_probs=9.3
Q ss_pred ccccCCCCCCccc
Q 000695 1038 SASAVPFNPSPAV 1050 (1349)
Q Consensus 1038 ~~~~~~~~~~~~~ 1050 (1349)
+|...|.||||++
T Consensus 778 ~~~g~p~~p~p~p 790 (1049)
T KOG0307|consen 778 SANGFPYNPSPAP 790 (1049)
T ss_pred cccCCCCCCCCCC
Confidence 4555688888884
No 325
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=22 Score=44.99 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=90.7
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHHHhcCCh
Q 000695 475 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------------HIQTAASYHAIAIALSLMEAY 538 (1349)
Q Consensus 475 dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d----------------hp~tA~a~~nLA~ay~~lGdy 538 (1349)
.+|..+..+..+|.++..+|+.+.|..+.+++|-...+++.+. ......+++..-+-+.+.|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 5788889999999999999999999999999998877654322 112233444444556688999
Q ss_pred hHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhccC-CCchhhhhcCCCcHHHHHHHHHHHHHH
Q 000695 539 PLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTR-KPDASIASKGHLSVSDLLDYINPSHDT 616 (1349)
Q Consensus 539 dEAie~lekALeI~kk~LG~d-hp~T~eal~~La~L~qk~~eqAEAl~~~a~-a~d~~ia~k~h~svaelL~~Lg~iy~a 616 (1349)
..|.++++-.+.+ .+. +|.....+--+..+..+.|+.-..+.+... .-.........-+++ |+..|..
T Consensus 359 rTA~E~cKlllsL-----dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-----lA~f~l~ 428 (665)
T KOG2422|consen 359 RTALEWCKLLLSL-----DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-----LARFFLR 428 (665)
T ss_pred HHHHHHHHHHhhc-----CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-----HHHHHHh
Confidence 9999988766543 454 665544443333334444443332222111 111111111111233 3444444
Q ss_pred CCC---hHHHHHHHHHHHHHhc
Q 000695 617 KGR---NVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 617 qGd---yEEAle~yekALeL~~ 635 (1349)
+.. -+.|+..+.+|+++++
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 444 5678999999999887
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.01 E-value=0.97 Score=34.22 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 605 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 605 elL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
+++..+|.+|...|++++|+.+|++.++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46889999999999999999999999987764
No 327
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.89 E-value=7.9 Score=39.26 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000695 360 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 435 (1349)
Q Consensus 360 lG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l----GdyeeAle~~qKALeI~ErilG~Dhp 435 (1349)
.|..++.+|++-+|+++.++.+.... .+...+..+..-|.+++.+ .+.+-=..|+.-+++-+.+.... +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 46778899999999999999886632 2233335566667766554 34444455666666665554333 45
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 436 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 436 dta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
..+..++.||.-+-....|++++.-.+++|.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5677777777666555556666665555554
No 328
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.65 E-value=13 Score=45.24 Aligned_cols=101 Identities=22% Similarity=0.207 Sum_probs=75.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc------hh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000695 403 AVVLYHTGDFNQATIYQQKALDINERELGLDHP------DT----MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 472 (1349)
Q Consensus 403 A~ay~~lGdyeeAle~~qKALeI~ErilG~Dhp------dt----a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~ 472 (1349)
|..++++++|..|..-|+.||+++.+..-...+ +. ..+...|..||..+++.+.|+.+..+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 455677888888888888888888764322211 11 234567999999999999999999998864
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 473 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 473 G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
+|....-+...|.++..+.+|.+|.+-+--|.-++.
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666788899999999999988877766664
No 329
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.35 E-value=0.32 Score=57.16 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=77.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000695 405 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 484 (1349)
Q Consensus 405 ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~ 484 (1349)
-.+..|.++.|+++|-.|+.+ .|..+..|..-|.++..+++...|++-|..|+.+ .++.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344578899999999999886 5778899999999999999999999999999986 466777777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 485 NVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 485 NLA~iy~~lGdydeAle~LekALei 509 (1349)
.-|.+...+|+|.+|..+|..|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 7888899999999999999888775
No 330
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=14 Score=43.73 Aligned_cols=131 Identities=9% Similarity=0.041 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000695 414 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 493 (1349)
Q Consensus 414 eAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~l 493 (1349)
+-++-+.++++-.++.+|. .+...++.+.|..|.+.|+-+.|++.+++..+-.-.+. ...++.-+...||.+|...
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH
Confidence 3344555666666665554 45788999999999999999999999998877543332 2345666777888888654
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 494 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 494 GdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
+---+.+++|-.+.++-...+......+| -|.......+|.+|..+|-.++..|.
T Consensus 158 ---~lV~~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 ---DLVTESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ---HHHHHHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33334444555555442111122233333 56666677889999998888876653
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.57 E-value=1.9 Score=35.58 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG 431 (1349)
.+|..||.+.+..++|++|+.-|++||.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999887654
No 332
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.19 E-value=8.7 Score=47.17 Aligned_cols=134 Identities=24% Similarity=0.181 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCC----CC---hhhHHHHHHH----HHHHHhcCCHHHHHHHHHH
Q 000695 354 GRQLLESSKTALDK-GKLEDAVTYGTKALAKLVAVCGP----YH---RMTAGAYSLL----AVVLYHTGDFNQATIYQQK 421 (1349)
Q Consensus 354 A~~LlelG~~yl~q-GdyeEAlel~eeALel~eqvlG~----dh---p~~A~ay~~L----A~ay~~lGdyeeAle~~qK 421 (1349)
..++--+|..|... .|.-.|+.++.++++...+- |. .+ |..+.-|... ..+-...+|.+ .+--+
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~-~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmq 320 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESD-GESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQ 320 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhc-cccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHH
Confidence 33444445555433 35778999999999887651 11 11 1111111111 11111112222 23457
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000695 422 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 491 (1349)
Q Consensus 422 ALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~ 491 (1349)
||.+.++++|++|+++.......|-+|...|+++..+++++.||.+.++.+.+-.|.++..+...|.++.
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 8889999999999998877677889999999999999999999999999998889999888888887765
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.98 E-value=1.5 Score=33.14 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
+++++|.+|..+|++++|+.+|++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999874
No 334
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.95 E-value=90 Score=36.11 Aligned_cols=148 Identities=13% Similarity=0.025 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 432 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdye-eAle~~qKALeI~ErilG~ 432 (1349)
...++.-+..++..|++..|.++..-.++.+.+.. .+........|+.++.....-+ +-..+..+|+... ..+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS--~~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS--KFGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH--HTSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--ccCC
Confidence 45667777888999999999999888888877642 1222334466777776665433 4556778888877 3344
Q ss_pred CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHHHHHH-HHHHHCCCHHHHH
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATYINVA-MMEEGLGNVHVAL 500 (1349)
Q Consensus 433 Dhpdta~ay~NLA~ly~~lGdyeeALe~yerA-----------Lel~e~l~G~dhP~~a~al~NLA-~iy~~lGdydeAl 500 (1349)
........+..+|..|+..|++.+|+.+|-.+ +..+... |. +.....+...| ..|...++...|.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~--~~e~dlfi~RaVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY--PSEADLFIARAVLQYLCLGNLRDAN 161 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS--S--HHHHHHHHHHHHHHTTBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC--CcchhHHHHHHHHHHHHhcCHHHHH
Confidence 45556788899999999999999999888322 1122222 22 22223343333 3477789999888
Q ss_pred HHHHHHHHH
Q 000695 501 RYLHKALKC 509 (1349)
Q Consensus 501 e~LekALei 509 (1349)
..+..-++.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766655
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.68 E-value=2.1 Score=35.35 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
.+|..||.+-...++|++|+.-|++|++|.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 567889999999999999999999999999888764
No 336
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.48 E-value=3.3 Score=52.97 Aligned_cols=10 Identities=10% Similarity=-0.041 Sum_probs=4.4
Q ss_pred cccccccCCc
Q 000695 64 SEMKVEGLGT 73 (1349)
Q Consensus 64 ~~~~~~~~~~ 73 (1349)
.|..+++=||
T Consensus 24 de~~tk~~~~ 33 (1102)
T KOG1924|consen 24 DEERTKLREK 33 (1102)
T ss_pred ccchhccCcc
Confidence 4444444443
No 337
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.35 E-value=7.5 Score=47.09 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HH
Q 000695 394 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL---HL 470 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~---e~ 470 (1349)
.+-.++..||.-|+..|+++.|+..|-++-+.+.. ...++..+.|+-.+-..+|+|..-+.+..+|.... ..
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 45678999999999999999999999998776643 34578889999999999999988888888877652 11
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000695 471 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 506 (1349)
Q Consensus 471 l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekA 506 (1349)
.- ..-+..+.++ -|.+...+++|..|..+|-.+
T Consensus 223 ~~-q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LA-QEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HH-HhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 00 0112223344 455555566888888887654
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.11 E-value=97 Score=35.85 Aligned_cols=158 Identities=14% Similarity=0.033 Sum_probs=82.3
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000695 366 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 445 (1349)
Q Consensus 366 ~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA 445 (1349)
.+++|++|++++...... +.+.|++.-|.++..-.++.++.... +.......+|+
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 466777777766655433 34445555555555555555554211 11222345666
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HH---H--HHhc
Q 000695 446 VFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL-----KC---N--QRLL 514 (1349)
Q Consensus 446 ~ly~~lGdye-eALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekAL-----ei---~--ekll 514 (1349)
.++.....-+ +-..+.++|+.-. . .|.........+..+|.+|++-|++.+|..+|-.+- .. . ....
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 6666665433 3445566666544 2 232222345677889999999999999999883221 11 0 0111
Q ss_pred CCCcHHHHHHHH-HHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 515 GPDHIQTAASYH-AIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 515 G~dhp~tA~a~~-nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
|..+ ....+. +...-|..+++...|...+..-.+.+
T Consensus 135 ~~~~--e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 135 GYPS--EADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp TSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred cCCc--chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2222 122332 23344678899999988776666553
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.07 E-value=12 Score=46.99 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 398 AYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 398 ay~~LA~ay~-~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+.++|..|+ .+|+..+|+.++..|+-... +|.. -.++..||.++++.|...+|--.+..|+...
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~dA-------- 279 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHNK-DIALLSLATVLHRAGFSADAAVILHAALDDA-------- 279 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----cccc-cchhhhHHHHHHHcccccchhheeehhccCC--------
Confidence 3445555554 57999999999999987642 2322 2356789999999999988887776666532
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
+....-++.+|.+|..+++|.....+|..|++.
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333334677888888899988888888877654
No 340
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=29 Score=40.63 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 000695 369 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 448 (1349)
Q Consensus 369 dyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly 448 (1349)
.-++-++-+.+.++-.+..- ...+.+.++.++|..|...+|.+.+.+++.+.+.-...+ .-..++..+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh
Confidence 34555666777776665442 245678899999999999999999999998887654332 22356677777888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 449 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 449 ~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
..+.-.++.++.....++ + |.+....-..-...|.......+|.+|..++-..+..+
T Consensus 166 ~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 166 GDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred ccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 766555555554444443 2 32322222222335666777788888888887777654
No 341
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=82.95 E-value=1.2e+02 Score=38.51 Aligned_cols=211 Identities=14% Similarity=0.055 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcC
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGd---yeeALe~yerALel~e~l~G 473 (1349)
..+...+.++...|+...|-.+-.++..++++....-.......|+.++......-+ ++.--.++.+++.+.
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~----- 361 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE----- 361 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-----
Confidence 344566777888888777776666666666653222222233344444444333333 455556666666553
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 474 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 474 ~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
+.+..-+|+++-..-.+..-...|...|.+|-+.-+ +..|..++.++ .-|...+|..-|...|+-.+.-+
T Consensus 362 --~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf- 431 (656)
T KOG1914|consen 362 --DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF- 431 (656)
T ss_pred --ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc-
Confidence 223333444554545555557788888888765431 22233222222 22567899999999988777544
Q ss_pred HhcCCCCHHHHH-HHHHHHHHHHHhHHHHHHHHhccCC--CchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 000695 554 AKLGPDDLRTQD-AAAWLEYFESKAFEQQEAARNGTRK--PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 630 (1349)
Q Consensus 554 k~LG~dhp~T~e-al~~La~L~qk~~eqAEAl~~~a~a--~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekA 630 (1349)
| +.+.... -+.+|..+.. -..+.++...... +.+. ...++|..+-.....-|+...+++.-++-
T Consensus 432 ---~-d~p~yv~~YldfL~~lNd--d~N~R~LFEr~l~s~l~~~-------ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 432 ---G-DSPEYVLKYLDFLSHLND--DNNARALFERVLTSVLSAD-------KSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred ---C-CChHHHHHHHHHHHHhCc--chhHHHHHHHHHhccCChh-------hhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3 4444332 2333333322 1233344332211 1111 23356666656667789998888877776
Q ss_pred HHHhc
Q 000695 631 AKVKG 635 (1349)
Q Consensus 631 LeL~~ 635 (1349)
...+.
T Consensus 499 ~~af~ 503 (656)
T KOG1914|consen 499 FTAFP 503 (656)
T ss_pred HHhcc
Confidence 66666
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.36 E-value=47 Score=36.63 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
|..+..+.+.++.++|+..|...-.. -+| ..-..+.+..|.+....|+-..|+.+|..+-.. ...|..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lekt---g~g---~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~ 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKT---GYG---SYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQI 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhc---CCC---cchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcch
Confidence 34455566788899999888654322 122 233456778899999999999999999876442 112333
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 438 M--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 438 a--~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
. .+...-|.++...|.|+.-.. ..+.+.++..|....+.-.||..-++.|++..|..+|.+...
T Consensus 130 ~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 130 GRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 234556778888888876543 334445777888888999999999999999999999987665
No 343
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.01 E-value=14 Score=39.86 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=71.3
Q ss_pred cCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000695 348 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 427 (1349)
Q Consensus 348 ~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~E 427 (1349)
.|.......|++.....+..++.+++..++. ++..+ .|.....-..-|.++...|+|.+|+.+++....
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--- 72 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--- 72 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---
Confidence 4556667788888899999999999888775 44332 466777788889999999999999999988643
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHcCCHH
Q 000695 428 RELGLDHPDTMKSYGDLAVFYYRLQHTE 455 (1349)
Q Consensus 428 rilG~Dhpdta~ay~NLA~ly~~lGdye 455 (1349)
+.+....+-..+|.|++.+|+..
T Consensus 73 -----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----cCCCChHHHHHHHHHHHHcCChH
Confidence 34556666677899998888764
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.87 E-value=2 Score=30.30 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.++.++|.+|..+++++.|..+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999864
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.65 E-value=2 Score=30.33 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHhc
Q 000695 605 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 635 (1349)
Q Consensus 605 elL~~Lg~iy~aqGdyEEAle~yekALeL~~ 635 (1349)
..+..+|.++..+|++++|..+|++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3578899999999999999999999998754
No 346
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=22 Score=41.66 Aligned_cols=134 Identities=10% Similarity=0.079 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000695 411 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 490 (1349)
Q Consensus 411 dyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy 490 (1349)
.-++-++-+.++++-.+..-| ..+...++.|+|.+|...++.+.+.+++.+.+.-.-.+. -..++.-+-..||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhh
Confidence 334555556666655544322 345788999999999999999999999999887654432 2344555667788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 491 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 491 ~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
..+.-.++.++... .+.++ |.+....-......|.......+|.+|..++-.++..|.
T Consensus 166 ~d~~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVAD---DIIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHH---HHHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 66544444444433 33333 233222222222356666677788888888877776553
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.23 E-value=17 Score=45.89 Aligned_cols=100 Identities=24% Similarity=0.061 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
+......+..+..+|+..+|+.++..++-+... |.. -.++..||.++.++|...+|--.+..|+.-
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~d-------- 278 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HNK-DIALLSLATVLHRAGFSADAAVILHAALDD-------- 278 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----ccc-cchhhhHHHHHHHcccccchhheeehhccC--------
Confidence 333333344556789999999999999877432 222 236778999999999999998877666543
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.+....-++.+|.+|..+++|...+.+|..+...
T Consensus 279 A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 279 ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 2334444788889999999998888888877653
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=35 Score=40.64 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000695 371 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 450 (1349)
Q Consensus 371 eEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~ 450 (1349)
++-++-+.++++-.++.+| ..+...++...|..|.+.||-+.|+..+++..+-.-. .| ...++......||.+|..
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-~g-~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-LG-HKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-cc-cchhhHHHHHHHHHhhcc
Confidence 3445566667777666655 3567889999999999999999999999887654222 12 234667777788888865
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 451 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 451 lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
..-..+ ..++|-.+.++-+.-+......+| -|.......+|.+|..+|-.++..+
T Consensus 157 ~~lV~~---~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVTE---SIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH---HHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 543333 344444444442211122233344 5666777788999988888777654
No 349
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.36 E-value=49 Score=40.36 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV--FYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~--ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
-....+.-++..++|..|...+...+.- +-+.. . ...+..|+. .++...++.+|.++++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~--~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGRE--E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchh--h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 3445666777899999999999987753 21211 1 345555544 4566778899999999887643210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
......+..+..+. ++...+...+.........-.......++.-|.=-...|+|+.|+..+=++++++.+
T Consensus 203 -~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111121111 222222222222111100001222333333333334689999999888888887654
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.65 E-value=8.6 Score=42.85 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=53.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 501 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle 501 (1349)
-|....+++...+.||.+|. ..+.++|+.+|.++|++... ++.....++..||.+|..+|+++.|--
T Consensus 133 E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 133 EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 35555677888999998887 67889999999999997533 333346778889999999999998853
No 351
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=79.33 E-value=26 Score=44.26 Aligned_cols=95 Identities=16% Similarity=0.011 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000695 413 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 490 (1349)
Q Consensus 413 eeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~l--GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy 490 (1349)
.+-..+.++.|.++-.. |. -.....++.+||.+.... ..-..++.+|.+|+...+..|+..|. .-|..+|-.|
T Consensus 254 ~e~~~lqq~lLw~lyd~-gh-l~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~ 328 (618)
T PF05053_consen 254 VELAQLQQDLLWLLYDM-GH-LARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYY 328 (618)
T ss_dssp HHHHHHHHHHHHHHHHT-TT-TTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-Cc-hhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHH
Confidence 34445555555554332 11 123567788888876543 33467899999999999999975553 3456689999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHH
Q 000695 491 EGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 491 ~~lGdydeAle~LekALei~ek 512 (1349)
++.++|.+|+.++-+|-+..+.
T Consensus 329 yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 329 YRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776644
No 352
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.27 E-value=26 Score=35.64 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 444 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 444 LA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~----lGdydeAle~LekALei~ekllG~dhp 519 (1349)
+|.-++..|++-+|+++.+..+... |.+ ......+...|.++.. ..+.+.=..|+.-+++.+.+..+- ++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 4677899999999999999988753 222 2122344455666643 345566666777777776554322 34
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
..|..++.||.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5577777777665544445555554444443
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.12 E-value=46 Score=48.22 Aligned_cols=112 Identities=22% Similarity=0.089 Sum_probs=82.5
Q ss_pred cCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000695 348 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 427 (1349)
Q Consensus 348 ~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~E 427 (1349)
......++.+++.|++....|+++.|..++-.|.+.. ...++...|..++..|+-..|+.++++.+..+.
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4556678999999999999999999999888887542 456888999999999999999999999997754
Q ss_pred HhcCC---------CCchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Q 000695 428 RELGL---------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLH 469 (1349)
Q Consensus 428 rilG~---------Dhpdta~ay~NLA~ly~~lGdy--eeALe~yerALel~e 469 (1349)
.-+-. +......+...++......+++ ..-+++|+.|.++..
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 32111 1111123455566666666765 456678888888754
No 354
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=86 Score=40.00 Aligned_cols=172 Identities=14% Similarity=0.027 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHH----hhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC------------
Q 000695 370 LEDAVTYGTKALAKLVA----VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD------------ 433 (1349)
Q Consensus 370 yeEAlel~eeALel~eq----vlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D------------ 433 (1349)
|++|...|.-|.....- ++-..+|.....+..+|.+...+||.+.|..+.+++|-.+++.+.+.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 44555555555443220 01124677788999999999999999999999999998888764321
Q ss_pred -Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 434 -HPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 434 -hpdt---a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d-hP~~a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
++.. ..+++..-..+...|-+..|+++++-.+.+ .+. +|. .+++.+-....+..+|+-=+++++..-.
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPL--GILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1111 112222233445678888888888776654 222 343 2333344444566677776776665532
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHH
Q 000695 509 CNQRLLGPDHIQTAASYHAIAIALSLMEA---YPLSVQHEQTTLQIL 552 (1349)
Q Consensus 509 i~ekllG~dhp~tA~a~~nLA~ay~~lGd---ydEAie~lekALeI~ 552 (1349)
.. ++. .-|..+. -..||..|..... -+.|...+.+|+..+
T Consensus 407 ~n-~l~--~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 407 MN-KLS--QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hc-cHh--hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 22 110 0111111 1235555655544 466777888887654
No 355
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.97 E-value=24 Score=46.26 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 377 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 377 ~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
|.-|+.++... +.+....+.++...|.-++..|++++|..+|.+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 33344444432 23445567888899999999999999999999998653
No 356
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.77 E-value=29 Score=36.08 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 483 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH-------IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 483 l~NLA~iy~~lGdydeAle~LekALei~ekllG~dh-------p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
+..+|......+++-.|+-+|++|+.+.++...... .......+|||..+..+|+-+-.+.|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456888889999999999999999999887732111 1234567899999999999999999999887766554
Q ss_pred c
Q 000695 556 L 556 (1349)
Q Consensus 556 L 556 (1349)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 4
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.69 E-value=70 Score=39.89 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=22.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 418 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~ 418 (1349)
+.....++++++..+.... .+...+ | -.-...++..+..+|.++.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i-----~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNI-----P--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccC-----C--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 4456788999877666311 111111 1 12355666777777777776654
No 358
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=78.38 E-value=34 Score=37.91 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc-----C--CHHHHHHHH
Q 000695 352 ADGRQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----G--DFNQATIYQ 419 (1349)
Q Consensus 352 s~A~~LlelG~~yl-----~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l-----G--dyeeAle~~ 419 (1349)
.....-+..|..++ ..+++..|+++|..+... ....+..++|.++..- + +..+|++|+
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~ 135 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYM 135 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHH
Confidence 33444555555444 345788888888887642 3455677788777653 2 367888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHH------------------------cCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 420 QKALDINERELGLDHPDTMKSYGDLAVFYYR------------------------LQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 420 qKALeI~ErilG~Dhpdta~ay~NLA~ly~~------------------------lGdyeeALe~yerALel~e~l~G~d 475 (1349)
.+|.++- ...+.++|...|.. ..+.+.|+++..+|.++ +
T Consensus 136 traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~ 198 (248)
T KOG4014|consen 136 TRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------D 198 (248)
T ss_pred HHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------C
Confidence 8887641 23344555544443 24556666666666553 4
Q ss_pred ChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHh
Q 000695 476 HPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~l----GdydeAle~LekALei~ekl 513 (1349)
|+ .+..|+..+|..- ++.++|..|-.+|+++.+.+
T Consensus 199 ~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 199 IP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred Ch---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44 4566778877532 35789999999999998665
No 359
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.12 E-value=1.9e+02 Score=36.19 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHH-
Q 000695 352 ADGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI--YQQKALDINE- 427 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGd-yeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle--~~qKALeI~E- 427 (1349)
..+..|+.-|..+...|. -++|+++++.++.... .+. .|.+..- .+-...|.+|+. .+-+.+.+-.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-----yD~---ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-----YDI---ECENIVF--LFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-----ccH---HHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456667777888888888 7788999988887631 111 2221111 111112333332 2222222211
Q ss_pred -HhcCCCCch--hHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000695 428 -RELGLDHPD--TMKSYGDL--AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 502 (1349)
Q Consensus 428 -rilG~Dhpd--ta~ay~NL--A~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~ 502 (1349)
...|..... ....-+.| |.+++..|+|.++.-|..-..++ .| ...+|..+|.++....+|++|..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 112322111 12223333 56778999999988776555544 23 356788899999999999999998
Q ss_pred HHH
Q 000695 503 LHK 505 (1349)
Q Consensus 503 Lek 505 (1349)
+..
T Consensus 518 l~~ 520 (549)
T PF07079_consen 518 LQK 520 (549)
T ss_pred HHh
Confidence 864
No 360
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.07 E-value=96 Score=37.13 Aligned_cols=95 Identities=20% Similarity=0.105 Sum_probs=60.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---------C
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG---------L 432 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG---------~ 432 (1349)
+......+..+-+....+||++ +++.+.+|..||.--. --..+|..++++||...+..+. .
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 3344555666667777777766 6788888888876432 3367888888888876554321 1
Q ss_pred --------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 433 --------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 433 --------Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
|..-...+...||.|-.++|+..+|.+.++...+
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111233345677777777777777777766544
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.75 E-value=1.6e+02 Score=43.22 Aligned_cols=110 Identities=15% Similarity=-0.002 Sum_probs=78.6
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
...++.+|.++|.+....|+++.|..++-+|.+.. ...++...|..++..|+-..|+.++++.+..+..-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 45688999999999999999999999988887742 35677889999999999999999999999776332
Q ss_pred c-CC--------CcHHHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHH
Q 000695 514 L-GP--------DHIQTAASYHAIAIALSLMEAYP--LSVQHEQTTLQILR 553 (1349)
Q Consensus 514 l-G~--------dhp~tA~a~~nLA~ay~~lGdyd--EAie~lekALeI~k 553 (1349)
+ ++ +......+...++.-....+++. .-+.+|+++.+++.
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 11 11112234444555555566642 34566777776654
No 362
>PRK10941 hypothetical protein; Provisional
Probab=77.39 E-value=18 Score=42.15 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
.+.+.||-.+|...++++.|+.+.++.+.+ .+++| .-+...|.+|.++|.+..|+.-|+.-++.+ ++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~ 247 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE 247 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence 456788899999999999999999999875 34444 456678999999999999999999888876 55
Q ss_pred cHHHHHHHHHHH
Q 000695 518 HIQTAASYHAIA 529 (1349)
Q Consensus 518 hp~tA~a~~nLA 529 (1349)
.+....+...+.
T Consensus 248 dp~a~~ik~ql~ 259 (269)
T PRK10941 248 DPISEMIRAQIH 259 (269)
T ss_pred chhHHHHHHHHH
Confidence 565544444443
No 363
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.67 E-value=13 Score=49.89 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 517 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~d 517 (1349)
-.+...+|..+...-.-..--+.|.+||..+..+.|. +...--|..-|.+|+++|+|++-+++|.-|++.+ +.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 584 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQ 584 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CC
Confidence 4555666666654433322236777788777776542 3333446677889999999999999999999876 56
Q ss_pred cHHHHHHHHHHHH-HHH-hcCChhHHHHHHHHHHHHH
Q 000695 518 HIQTAASYHAIAI-ALS-LMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 518 hp~tA~a~~nLA~-ay~-~lGdydEAie~lekALeI~ 552 (1349)
||......-.+.. ++. ...+...|+.++.-++.++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (932)
T PRK13184 585 HPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIA 621 (932)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6665544333221 111 1123344555555555444
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.17 E-value=3e+02 Score=38.13 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 484 INVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 484 ~NLA~iy~~lGdydeAle~LekALe 508 (1349)
..|+.-+..++++-+|.+.+.+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566666677777777666655443
No 365
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.15 E-value=8.9 Score=47.70 Aligned_cols=97 Identities=18% Similarity=0.035 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHh
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINERE 429 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~l---GdyeeAle~~qKALeI~Eri 429 (1349)
.++.++..|.-.+..+....|+..|.+++.. .+....+|.+.|.+++.+ |+.-.|+.-+..|+++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---- 440 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---- 440 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----
Confidence 4555555565556666777888888888754 456677888888888875 5666677777777765
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 465 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerAL 465 (1349)
++-...+++.|+.++..++++.+|+.+...+.
T Consensus 441 ----n~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 441 ----NPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred ----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 46678899999999999999999998765443
No 366
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.93 E-value=98 Score=37.01 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000695 393 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 469 (1349)
Q Consensus 393 p~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~---Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e 469 (1349)
...+.+...||.+|-.-++|..|...+.- +.. ..|. +....+..+..+|.+|...++..+|..+..++--+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 34677888999999999888877654421 111 1111 1223466788999999999999999999998865543
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000695 470 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 470 ~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALe 508 (1349)
.. .+.......-...|.++-..++|-+|...|-+...
T Consensus 176 ~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 176 ES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred cc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 12122233344567777778888776666655443
No 367
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.38 E-value=13 Score=32.82 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 568 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~ 568 (1349)
.+++.||..+..+|+|.+|..+.+.++++ .|++........
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Confidence 46788999999999999999999999977 466665544433
No 368
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.02 E-value=34 Score=42.08 Aligned_cols=118 Identities=14% Similarity=-0.090 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS----HPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCN 510 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d----hP~~a~al~NLA~iy~~lGd---ydeAle~LekALei~ 510 (1349)
+..|+.-|.+......|++|+.++-.|=+.+.... .. --.++..-..+-+||+.+.+ ...|..-+..|-+.+
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd-~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCD-SKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh-HHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 34456677788888889999888877766554321 10 00112222334566776665 456777777776666
Q ss_pred HHhcCCCc-----------HH---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 511 QRLLGPDH-----------IQ---TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 511 ekllG~dh-----------p~---tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
.+.+|.++ |. +...+..-|.+.+.+|+-++|.++++.|...+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 66666543 32 345556678899999999999999999998876653
No 369
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.99 E-value=21 Score=40.36 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000695 415 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492 (1349)
Q Consensus 415 Ale~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~ 492 (1349)
|..||.+|+.+ .|.....|+.||.++...|+.-.|+-+|-|++.. .+|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 4778999999999999999999999999999853 3454 5677888888777
No 370
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.77 E-value=32 Score=37.21 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 394 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
.+...+..+..+-...++.+++..++.-. .+. .|.....-..-|+++...|+|.+|+.+++.+..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~AL-rvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDAL-RVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHH-HHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------
Confidence 44556677777778888888888877544 332 466777778889999999999999999998654
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHH
Q 000695 474 PSHPNTAATYINVAMMEEGLGNVH 497 (1349)
Q Consensus 474 ~dhP~~a~al~NLA~iy~~lGdyd 497 (1349)
..+....+--.+|.|+..+|+..
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCChH
Confidence 23444444455888888888754
No 371
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.76 E-value=1.9e+02 Score=34.30 Aligned_cols=137 Identities=15% Similarity=0.052 Sum_probs=83.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 000695 363 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 442 (1349)
Q Consensus 363 ~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~ 442 (1349)
..+..|++-+|...|+..+..+... ..|.........-|.+++..++..-|..+.-..++.++..- ..+.....-
T Consensus 15 a~~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~---~ad~~~~~a 89 (312)
T KOG3024|consen 15 ASIELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE---VADSLLKVA 89 (312)
T ss_pred hccccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH---hhHhHHHHH
Confidence 3445667778877777666554443 34555556666667777777777777777777776665521 111222234
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000695 443 DLAVFYYRLQHTELALKY-VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 505 (1349)
Q Consensus 443 NLA~ly~~lGdyeeALe~-yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek 505 (1349)
||+.+....+.-+..+.- .+++++ |...+|...-.....+..||..++.-+++.+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raik-WS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIK-WSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 666666666655555544 445554 54444322222335567789999999999999988854
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.13 E-value=41 Score=38.02 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000695 373 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 450 (1349)
Q Consensus 373 Alel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~ 450 (1349)
|+.+|.+|+.+ .|..+..|+.||.++...|+.-.|+-+|-+++.. ..|- ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 68899999987 5788899999999999999999999999999854 2333 5677888887776
No 373
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=73.75 E-value=1.3e+02 Score=36.61 Aligned_cols=34 Identities=9% Similarity=-0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
..+.+++..|..+...+++.+++.+++.|...+.
T Consensus 250 f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 250 YASIAHLHMGKQSEEQQKMGERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777888888888888877543
No 374
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=73.50 E-value=70 Score=36.86 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Q 000695 412 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLL 468 (1349)
Q Consensus 412 yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~l-GdyeeALe~yerALel~ 468 (1349)
.+.|...|++|+++....+.+.||-......|.+.+|+.. ++.++|..+.++|+.-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4588999999999988878888998888888998888765 89999999888888754
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.13 E-value=21 Score=34.77 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=27.1
Q ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 434 hpdta~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
+|+...+.+.||..+...|++++|++.+..++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778999999999999999999998876665
No 376
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=71.23 E-value=1e+02 Score=37.22 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
.+.+++..|..+...+++.+|+..++.|...++
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~ 286 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIK 286 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 355566667777777778888888777776543
No 377
>PRK10941 hypothetical protein; Provisional
Probab=71.14 E-value=24 Score=41.10 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCC
Q 000695 479 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 558 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~ 558 (1349)
....+.||=.+|...++++.|+.+.+..+.+. ++++ .-+...|.+|.++|.+..|..-++.-++. .+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~-----~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQ-----CP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CC
Confidence 35667888999999999999999999998874 5555 33556799999999999999888766655 47
Q ss_pred CCHHHHHHHHHHHHHHH
Q 000695 559 DDLRTQDAAAWLEYFES 575 (1349)
Q Consensus 559 dhp~T~eal~~La~L~q 575 (1349)
+++........+..+..
T Consensus 247 ~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 247 EDPISEMIRAQIHSIEQ 263 (269)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 88877666666655443
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.79 E-value=1.3e+02 Score=33.35 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=96.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 441 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay 441 (1349)
..|.+.+.-..+=..|..||.+.. .+..++|+.-|... ++. |.. ..-..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~l----ekt-g~g-~YpvLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDL----EKT-GYG-SYPVLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHH----Hhc-CCC-cchHHHH
Confidence 345566666666677777776654 23445555544432 221 211 1234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a--~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp 519 (1349)
+..|.+....|+...|..+|..+-... ..|... .+...-|.++...|-|+.-.. ..+.+-++.++
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 788999999999999999998875421 233333 233445667777777765433 33445567778
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
....+...||.+-++.|+|..|..+|.....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888889999999999999999999876553
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.67 E-value=29 Score=40.82 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~D 433 (1349)
...+...++.|...|.+.+|+.+.++++.+ |+..-..+..|-.+|..+||--.|...|.+--...++-+|.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 445666788899999999999999999876 677777888899999999999999999999888888888876
Q ss_pred CchhHH
Q 000695 434 HPDTMK 439 (1349)
Q Consensus 434 hpdta~ 439 (1349)
-.+.+.
T Consensus 351 vddsie 356 (361)
T COG3947 351 VDDSIE 356 (361)
T ss_pred cchhHH
Confidence 544443
No 380
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.98 E-value=1.5e+02 Score=40.61 Aligned_cols=183 Identities=15% Similarity=0.057 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-------HHh-----------cCCC--ChhH-HHHHHHHHHHHHHCCCHHHH
Q 000695 441 YGDLAVFYYRLQHTELALKYVKRALYLL-------HLT-----------CGPS--HPNT-AATYINVAMMEEGLGNVHVA 499 (1349)
Q Consensus 441 y~NLA~ly~~lGdyeeALe~yerALel~-------e~l-----------~G~d--hP~~-a~al~NLA~iy~~lGdydeA 499 (1349)
...+|.+|...|+..+|+.+|.+|+.-. +.+ -|.. .+.+ ...|...-.++...+..+.+
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 3457888999999999999999987631 100 0111 1111 23333344444455555555
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHH
Q 000695 500 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE 579 (1349)
Q Consensus 500 le~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~L~qk~~e 579 (1349)
+++.-.|++- ++.+.+..+..+..+=.-+..+|.+-+|...+-+ .++.....+++..|.-+.-..++
T Consensus 1003 cQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 1003 CQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLFECGE 1069 (1480)
T ss_pred HHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHhccc
Confidence 5555555543 4667777777777777777788888777654321 24444444555444322111111
Q ss_pred HHHHHHh--ccCC------CchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHhcc
Q 000695 580 QQEAARN--GTRK------PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTL-KRKTYVAKVKGN 636 (1349)
Q Consensus 580 qAEAl~~--~a~a------~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAl-e~yekALeL~~k 636 (1349)
...-... ..+. +....+......-...|..|=..+..+++|.+|- .+|+.|.++...
T Consensus 1070 l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1070 LEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred hHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 1100000 0000 0000000011111223455555567889998854 568888888765
No 381
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.89 E-value=2.1e+02 Score=32.76 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Q 000695 454 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 454 yeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~-lGdydeAle~LekALei~ekl 513 (1349)
.+.|...|++|+.+....+.+.||.......|.+..|.. +|+.++|+...++|++-....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 378999999999999998889999999999999988765 899999999999998876443
No 382
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=69.61 E-value=19 Score=48.49 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=28.5
Q ss_pred CCCCccccccc-cceeccCCCCCCCCccccCccccccccCCCCcccCCCCCCC
Q 000695 1044 FNPSPAVARAS-AVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPM 1095 (1349)
Q Consensus 1044 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1349)
|||+--..+.+ |++=. .++|-+|-+| -||-- --+||.++.+++.|-
T Consensus 88 ~d~~~~~~~~p~Pi~ss-s~~pq~~F~p---~~p~~--s~sgp~~~~~~~~~~ 134 (1639)
T KOG0905|consen 88 FDPSYNEPRGPIPIPSS-SIYPQNYFQP---QWPKA--SLSGPSLYPAPGSPG 134 (1639)
T ss_pred ccccccCCCCCCCCccc-ccCCccCCCC---CCCCC--CCCCCcCCCCCCCCC
Confidence 66665545555 55555 6777777777 56643 247777777765543
No 383
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.91 E-value=38 Score=36.29 Aligned_cols=93 Identities=19% Similarity=0.085 Sum_probs=68.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 426 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ 426 (1349)
..|+......+.+.....+..++.+++..++. ++..+ .|.....-..-|.++...|++.+|+..++....-
T Consensus 3 ~qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~- 73 (153)
T TIGR02561 3 IQCSNRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS- 73 (153)
T ss_pred CcCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-
Confidence 35666677778888888888999999887765 44442 4666667777899999999999999999876542
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCCHH
Q 000695 427 ERELGLDHPDTMKSYGDLAVFYYRLQHTE 455 (1349)
Q Consensus 427 ErilG~Dhpdta~ay~NLA~ly~~lGdye 455 (1349)
.+........+|.|++.+|+.+
T Consensus 74 -------~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 -------AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -------CCCchHHHHHHHHHHHhcCChH
Confidence 2334455566888888888753
No 384
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.77 E-value=3.5e+02 Score=34.94 Aligned_cols=129 Identities=14% Similarity=-0.031 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
.......|......-...|++.....+|++++.-+-. .-..+...+......|+.+-|...+.++.++.
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--- 361 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIH--- 361 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc---
Confidence 3344555666666667789999999999998876532 44667788888888899999988888888764
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 543 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie 543 (1349)
++....+...-|.+....|+++.|...|++...-+ +....+-..-+.....+|+.+.+..
T Consensus 362 ----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 362 ----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH
Confidence 33444555556777888999999999998876543 2233333334555667777777664
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.60 E-value=7.2 Score=47.70 Aligned_cols=74 Identities=20% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000695 440 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 440 ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekl 513 (1349)
++..|..++.-+|+|..|++.++..---.+.++..-.+-...+++.+|.+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999999999998876532211222222334456788999999999999999999999998776554
No 386
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=68.41 E-value=1.6e+02 Score=38.94 Aligned_cols=27 Identities=26% Similarity=0.026 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 483 YINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 483 l~NLA~iy~~lGdydeAle~LekALei 509 (1349)
++..|.+|...|++.+|...|+.|+..
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~mw 964 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALMW 964 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777666543
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.18 E-value=44 Score=41.11 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQ-RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~e-kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
++..|..++.-+|+|..|++.++.. ++.+ .++..--.....+++.+|-+|..+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888999999999987643 2221 12222233445778999999999999999999999988766554
No 388
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.17 E-value=89 Score=38.27 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHH--HhcCCHHHHHHHHH
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL--YHTGDFNQATIYQQ 420 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay--~~lGdyeeAle~~q 420 (1349)
.+..-...++.++..++|..|..+|.+++... +..........|..|+.+| +..-++.+|..++.
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34445556778899999999999999988552 1122233445566666655 55788999999998
No 389
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.13 E-value=20 Score=48.42 Aligned_cols=107 Identities=18% Similarity=0.106 Sum_probs=69.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000695 364 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 443 (1349)
Q Consensus 364 yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~N 443 (1349)
++....|+.|+..|++.-.-+ +...+-..+.+.+|.....+-.-..--..|.+||..++...|. +....-|..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 557 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLG 557 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHh
Confidence 344445555555555443221 1223344567777777766533333336777888877776553 445667889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000695 444 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 482 (1349)
Q Consensus 444 LA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~a 482 (1349)
-|.+|.++|+|++-+++|.-|+..+ +.||.+...
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 9999999999999999999998864 356665443
No 390
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=68.02 E-value=2.6e+02 Score=34.05 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 387 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qG---------dyeEAlel~eeALel~eqv 387 (1349)
....+-.+|++|-.|.+.| .+.+|..+|++|-..+.-+
T Consensus 102 ~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l 148 (350)
T cd09244 102 AFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYL 148 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3345777888887775433 2567788888876665433
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.85 E-value=33 Score=33.41 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 476 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
+|....+.+.+|..+...|++++|++.+.++++..... +-+.|.+.+-..++ .
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-----------------------~~~~ar~~ll~~f~----~ 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-----------------------EDDAARKRLLDIFE----L 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-----------------------CCCHHHHHHHHHHH----H
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------------cccHHHHHHHHHHH----H
Confidence 56677888999999999999999999887766543111 22345444444443 4
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 000695 556 LGPDDLRTQDAAAWLEYF 573 (1349)
Q Consensus 556 LG~dhp~T~eal~~La~L 573 (1349)
+|+.||.+......|..+
T Consensus 71 lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 71 LGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp H-TT-HHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 588899888877777543
No 392
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=67.80 E-value=30 Score=45.21 Aligned_cols=99 Identities=31% Similarity=0.448 Sum_probs=53.9
Q ss_pred cccCCCCCCcccccc---ccceeccCCCCCCCCccccCccccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000695 1039 ASAVPFNPSPAVARA---SAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQP 1115 (1349)
Q Consensus 1039 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1115 (1349)
-++.+|=|--++++. +|+. |+-+++ ||+||...|- |.+-|+.+.|+| +|.+||. |-.|-||-+
T Consensus 544 ~s~~~~~P~~ap~s~~~~tp~q-~~~~~~-~~~~~~~~P~---~g~~p~~~~~~P--------~~~~~pt-~~~~pmm~~ 609 (756)
T KOG2375|consen 544 SSPSIFLPRVAPASPMAMTPFQ-NSQHNP-PGPVPGYNPQ---MGNPPTGTSVAP--------SPNGSPT-PGSPPMMSP 609 (756)
T ss_pred ccCCCCCCCcCccccCCCCCCc-cccCCC-CCCCCCCCcc---cCCCCCcceecC--------CCCCCCC-CCCCccccc
Confidence 556667665544433 2333 344444 5566665553 555555555555 3556676 666667765
Q ss_pred CC-----ccCCCCCCCCCCcCCCCCcccCCCCCCCccccccCCCCCCCccCCCCCC
Q 000695 1116 LP-----FMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLP 1166 (1349)
Q Consensus 1116 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1166 (1349)
+- ---|||.|+|--|..+= -++-++-.=|+||.+=+
T Consensus 610 ~~~~s~~~~~pp~pq~~~~p~~~g---------------r~~~~~~t~~~~~~~~~ 650 (756)
T KOG2375|consen 610 QQPGSPPQFMPPYPQPQFSPSGNG---------------RMASVPGTYFVPGKGGN 650 (756)
T ss_pred cccccccccCCCCCCcccCCCcCC---------------CCCCCcccccccccCCc
Confidence 43 12277777776555321 12345556677777655
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.18 E-value=2.9e+02 Score=33.48 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000695 447 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 526 (1349)
Q Consensus 447 ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~ 526 (1349)
+....++.++|++++++..+-....--+ -.+......+|.++...|+..++.+.+...-.......+-... +-..||
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~-Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN-VHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh-hhhhHH
Confidence 3445678999999999998876654211 2456677788999999999999999999888877666544332 334445
Q ss_pred HHH-HHHHhcCChhHHHHH
Q 000695 527 AIA-IALSLMEAYPLSVQH 544 (1349)
Q Consensus 527 nLA-~ay~~lGdydEAie~ 544 (1349)
.++ ..|...|+|..+..+
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 554 455567888764443
No 394
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=67.04 E-value=1.3e+02 Score=36.80 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHHHHH-------HcCC--------------------HHHH
Q 000695 410 GDFNQATIYQQKALDINERELGLDHPDT-----MKSYGDLAVFYY-------RLQH--------------------TELA 457 (1349)
Q Consensus 410 GdyeeAle~~qKALeI~ErilG~Dhpdt-----a~ay~NLA~ly~-------~lGd--------------------yeeA 457 (1349)
.+.+.-+.++++=+++++.++..-++.. -..++.||.+|. ...+ ...|
T Consensus 189 ~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~a 268 (371)
T PF12309_consen 189 EDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKA 268 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHH
Confidence 6777777888887887776655433321 123344444443 2222 2456
Q ss_pred HHHHHHHHHHHHHhc-CC--------CChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHH
Q 000695 458 LKYVKRALYLLHLTC-GP--------SHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCN 510 (1349)
Q Consensus 458 Le~yerALel~e~l~-G~--------dhP~~a~al~NLA~iy~~l--GdydeAle~LekALei~ 510 (1349)
+.+|+.-+..+...- +. .......+++.+|.+|.+. ++..+=++.+.++|..+
T Consensus 269 i~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y 332 (371)
T PF12309_consen 269 IKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYY 332 (371)
T ss_pred HHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHH
Confidence 666666666655321 10 0122467888999999876 44444444444444443
No 395
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=66.63 E-value=19 Score=42.23 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=17.4
Q ss_pred CCCccccccccceeccCCCCCCCCccccCcc
Q 000695 1045 NPSPAVARASAVAINMTLPPGPGAVTAVAPW 1075 (1349)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1349)
||-....-.++..=||.+|++|- +|-||.|
T Consensus 60 ~p~~~~mN~pampqnfQl~sm~l-~PqvG~~ 89 (407)
T PF04625_consen 60 NPLGQAMNGPAMPQNFQLPSMQL-GPQVGQN 89 (407)
T ss_pred CCcchhcccccchhhccCCCCCC-Ccccchh
Confidence 55433333455566777777655 5777665
No 396
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.56 E-value=67 Score=37.74 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000695 412 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 491 (1349)
Q Consensus 412 yeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~ 491 (1349)
|..-+...+++++- ..+.++..++..+...|+++.+.+.+++.+.+ ||..-..|..+-..|.
T Consensus 137 f~~WV~~~R~~l~e----------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 137 FDEWVLEQRRALEE----------LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHH
Confidence 55555555555542 25678899999999999999999999998874 6777778888899999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000695 492 GLGNVHVALRYLHKALKCNQRLLGPDHI 519 (1349)
Q Consensus 492 ~lGdydeAle~LekALei~ekllG~dhp 519 (1349)
..|+...|+..|++.-.....-+|-+-.
T Consensus 199 ~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 199 VNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 9999999999999988876666665543
No 397
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=66.26 E-value=3e+02 Score=33.31 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 520 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 520 ~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
..+.+++..|..+...+++.+|+..++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 356667778888888889999999998887654
No 398
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=66.25 E-value=1.7e+02 Score=34.81 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
.+.+++.+|..+...+++.+|+.+++.|...++.
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777888877777765543
No 399
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.19 E-value=2.5e+02 Score=38.75 Aligned_cols=133 Identities=18% Similarity=0.108 Sum_probs=77.6
Q ss_pred hcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHH------hcCC----HHHHH
Q 000695 347 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY------HTGD----FNQAT 416 (1349)
Q Consensus 347 s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~------~lGd----yeeAl 416 (1349)
..+.....-.-+.+|..|+..|+..+|+.+|.+|+.-.. ..+ ++..+..-.. ..|+ -..|+
T Consensus 913 ~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g----e~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~l 983 (1480)
T KOG4521|consen 913 SWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFG----EGN-----ALRKLVYFLLPKRFSVADGKTPSEELTAL 983 (1480)
T ss_pred hhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccc----cHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHH
Confidence 345555555667788899999999999999999975321 111 1211111100 1121 12245
Q ss_pred HHHHHHHHHHHH----------------hcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000695 417 IYQQKALDINER----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 480 (1349)
Q Consensus 417 e~~qKALeI~Er----------------ilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a 480 (1349)
.||.++++++++ .++.+.|..+..+.++=..+..+|.|-+|.+.+-+- ++....-
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrr 1054 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRR 1054 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHH
Confidence 555555555443 246677777777777777777888877776543221 2223334
Q ss_pred HHHHHHHHHHHHCCCHH
Q 000695 481 ATYINVAMMEEGLGNVH 497 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdyd 497 (1349)
.++..|-.++...|+++
T Consensus 1055 dcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1055 DCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHhccchH
Confidence 55666666777777654
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.00 E-value=46 Score=35.26 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 479 TAATYINVAMMEEGLGN---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGd---ydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
...+.+++|.++..-.+ ..+.+.+|+..++ . ......-.+.|.||..+.++++|+.|+.|....++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----
Confidence 45678899999887654 4566677766665 1 122234577888999999999999999999988865
Q ss_pred cCCCCHHHHHHHHHH
Q 000695 556 LGPDDLRTQDAAAWL 570 (1349)
Q Consensus 556 LG~dhp~T~eal~~L 570 (1349)
.+++.........+
T Consensus 101 -e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 101 -EPNNRQALELKETI 114 (149)
T ss_pred -CCCcHHHHHHHHHH
Confidence 35555544443333
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.89 E-value=1.1e+02 Score=36.63 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------CC--
Q 000695 407 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG---------PS-- 475 (1349)
Q Consensus 407 ~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G---------~d-- 475 (1349)
.+..+..+-+.....||+| +++.+.+|..||.- ..--..+|++++++||+..+..+. ..
T Consensus 195 WRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 3334455556666777776 35667777776643 233456788888888875443321 11
Q ss_pred ------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChh
Q 000695 476 ------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 539 (1349)
Q Consensus 476 ------hP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdyd 539 (1349)
..-...+-..||++..++|+..+|.+.++...+-.- -.....++-||-.++..+..|.
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 111234556899999999999999999876554321 1123344455555555554443
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.95 E-value=36 Score=30.11 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.++.+|..+.++|+|++|+.+.+.+|++-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999884
No 403
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.55 E-value=73 Score=40.54 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 395 TAGAYSLLAVVLYH--TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 395 ~A~ay~~LA~ay~~--lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
...++.+||.+--. ..+-..++.+|.+|+...+..++..| ..-|..+|-+|++.++|.+|+.++-.|-...
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665543 23346789999999999999887555 4567889999999999999999888876654
No 404
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.01 E-value=2.2e+02 Score=34.98 Aligned_cols=60 Identities=10% Similarity=-0.151 Sum_probs=41.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--hcCChhHHHHHHHH
Q 000695 485 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS--LMEAYPLSVQHEQT 547 (1349)
Q Consensus 485 NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~--~lGdydEAie~lek 547 (1349)
..+..++..++|..|...|.+++... +.+........+..|+.+|. ..-++++|..++.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556788999999999999988652 11222233455666666654 67788888888874
No 405
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.86 E-value=17 Score=44.61 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=13.5
Q ss_pred CCccCCCCCCCCCCcCCCCCcccCCCCCCCc
Q 000695 1116 LPFMYPPYTQPQGVPTSTFPVTTSAFHHNHF 1146 (1349)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 (1349)
||.|| ||+|+..-|.--+ --+++||-+|+
T Consensus 451 mpp~~-P~~~~pppP~~pp-~p~~~~~q~q~ 479 (483)
T KOG2236|consen 451 MPPAY-PHQQSPPPPPPPP-PPNSPMNQMQN 479 (483)
T ss_pred CCCCC-ccccCCCCCCCCC-CCCChhhcccC
Confidence 44555 4455544442222 22456666655
No 406
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.78 E-value=3.4e+02 Score=32.73 Aligned_cols=74 Identities=14% Similarity=-0.078 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
..+.+...||.+|.+-++|..|...+.- +..-.-....+....+..+..+|.+|...++..+|..+..++--+.
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 4567788999999999999998877642 2111100112234467788899999999999999999988875443
No 407
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=62.75 E-value=1.5e+02 Score=38.01 Aligned_cols=112 Identities=18% Similarity=0.054 Sum_probs=75.9
Q ss_pred hCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 000695 388 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALY 466 (1349)
Q Consensus 388 lG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yer-ALe 466 (1349)
+++.++....++. +...+...++...|......++.. .+..+.++.+||......|..-.++..+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4567777766666 888888889988888777777765 567788999999998887777666554444 333
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 467 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 467 l~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.... ....--.....|. +|..+..+|+..++..+++++.++.
T Consensus 131 ~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LSPD-NAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cCcc-hHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhh
Confidence 2100 0000001122333 7888888999999999988888876
No 408
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.30 E-value=66 Score=42.52 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 419 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 419 ~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
|.-|+.++.. .+.+...+..++...|..++..|++++|..+|-+++..
T Consensus 350 y~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4445555443 24444557778889999999999999999999998864
No 409
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=61.82 E-value=2.4e+02 Score=34.16 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=26.2
Q ss_pred cCChHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000695 348 ACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 387 (1349)
Q Consensus 348 ~~sss~A~~LlelG~~yl~qG---------dyeEAlel~eeALel~eqv 387 (1349)
......+-.+|++|-.|.+.+ .+.+|..+|++|-..++-+
T Consensus 105 sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 105 NVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 344555777888887765433 3667888888887666543
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.81 E-value=18 Score=42.60 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
..+...+..|.-....|+.++|..+|..|+++ .|....++..+|.......+.-+|-.+|-+||.+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34556666777788999999999999999987 4555668888999888889999999999999987
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.62 E-value=63 Score=41.30 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-----CCCc-HHH------HHHHHHHH-HHHHhcCChhHHHHHHHHH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLL-----GPDH-IQT------AASYHAIA-IALSLMEAYPLSVQHEQTT 548 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei~ekll-----G~dh-p~t------A~a~~nLA-~ay~~lGdydEAie~lekA 548 (1349)
-|..||.+....+++..|.++|.+|.++---++ |... ... ..-.+|+| .+|...|+++++++++.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 467799999999999999999999977542221 2111 000 11122333 2456778888877777665
No 412
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=61.33 E-value=3.3e+02 Score=34.91 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=105.6
Q ss_pred hhhhhhhhhcCChHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHH
Q 000695 339 SLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 417 (1349)
Q Consensus 339 ~LvPvvK~s~~sss~A~~LlelG~~yl~qGdyeEAle-l~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle 417 (1349)
++....+...+.......++..|..+++.+.|+-|+. +|.+.|..+ .....+...-...+-.+++-.|--++...
T Consensus 15 ~iw~ky~~rLP~~~y~eklL~~GD~L~~~keyklAl~qCY~ryL~qf----~~~~~e~~~d~~~fk~~ff~~g~~~~~a~ 90 (542)
T PF14858_consen 15 NIWNKYKPRLPAWYYNEKLLKVGDSLFQIKEYKLALWQCYGRYLQQF----SSDFDENIADVDQFKRVFFPNGFDDKRAR 90 (542)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchhhHHHHHHHHhcCCCCcccHHHH
Confidence 3444445555556667778888888888888888864 444444332 12233233234445555554443333322
Q ss_pred HHHHHHHH-----HHHhcCCCCch--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHH
Q 000695 418 YQQKALDI-----NERELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-----AATYIN 485 (1349)
Q Consensus 418 ~~qKALeI-----~ErilG~Dhpd--ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~-----a~al~N 485 (1349)
+.-+|+.- +......| +. .......+. +.+..++-+++. .+..+|-.. ....++
T Consensus 91 lt~~AL~G~~~c~f~l~~~~D-~~l~~~~sl~~~~----------~iLs~lRl~mq~---al~~E~l~Wii~NGtv~IY~ 156 (542)
T PF14858_consen 91 LTFRALFGRAICQFHLVCASD-PNLQNPESLCKCL----------RILSFLRLIMQL---ALPQEHLCWIIYNGTVHIYT 156 (542)
T ss_pred HHHHHHhhHHhhhhhheeccC-CCcCChHHHHHHH----------HHHHHHHHHHHh---hcccccceeEeeCCeeeHHH
Confidence 22233221 11111111 11 111111111 122222222221 122222110 122356
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhc---CCC-cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 486 VAMMEEGLGNVHVALRYLHKALKCNQRLL---GPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 486 LA~iy~~lGdydeAle~LekALei~ekll---G~d-hp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
++.-+...|.-.++++++.-+..+.+... ... -+..+..|..+..+|...|.+.+|..+.++++.-...
T Consensus 157 ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 157 ICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 88888899999999999987766554322 111 2455677888999999999999999999999875544
No 413
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.20 E-value=11 Score=28.07 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKR 463 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yer 463 (1349)
.++.+||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999998763
No 414
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.14 E-value=1.8e+02 Score=34.40 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 394 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 394 ~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
....++..++..+...|+++.++..+++.+.+ +|..-..|..|-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678999999999999999999999888776 5667778888999999999999999999998886555555
Q ss_pred CCC
Q 000695 474 PSH 476 (1349)
Q Consensus 474 ~dh 476 (1349)
.+.
T Consensus 223 i~P 225 (280)
T COG3629 223 IDP 225 (280)
T ss_pred CCc
Confidence 443
No 415
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.87 E-value=20 Score=43.09 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 543 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie 543 (1349)
+.-+...|...+.++++++|...|..|..++...+|..|..+...++..|..++..+++..++-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445668888999999999999999999999999999999999999999999998888776553
No 416
>PRK14707 hypothetical protein; Provisional
Probab=60.37 E-value=2.4e+02 Score=41.25 Aligned_cols=201 Identities=11% Similarity=-0.060 Sum_probs=121.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 361 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGA--YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~a--y~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
+..+....+|.++-.+-.-++.+..++- ..+..... -..++.++..+.++.+.-.+-.-+..+..++.....-...
T Consensus 1006 AN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~A 1083 (2710)
T PRK14707 1006 ANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNA 1083 (2710)
T ss_pred HHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHh
Confidence 3444455556555555555555555552 23333222 2456667777777776555555555555544322111122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 518 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dh 518 (1349)
..--.+|.++..+-+|.+.-.+-.-++.+...+....++........++.++..+.+|...-.+=.-+..+..++.....
T Consensus 1084 l~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~ 1163 (2710)
T PRK14707 1084 LDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPG 1163 (2710)
T ss_pred hchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchh
Confidence 23346788888888898888888888888888766666666666667777777777776555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 000695 519 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 563 (1349)
Q Consensus 519 p~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T 563 (1349)
...+..-..+|..+..+.+|-+.-.+.+-++.+........++.-
T Consensus 1164 Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r 1208 (2710)
T PRK14707 1164 LRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWR 1208 (2710)
T ss_pred hhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCch
Confidence 445555667888888888887766666656666555444455543
No 417
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=59.96 E-value=5.4 Score=27.93 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.2
Q ss_pred cCCCCCCCccCCC
Q 000695 1151 NGNSNVPEFIPGP 1163 (1349)
Q Consensus 1151 ~~~~~~~~~~~~~ 1163 (1349)
.+||++.||||+.
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999974
No 418
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.75 E-value=1.3e+02 Score=37.60 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000695 439 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 502 (1349)
Q Consensus 439 ~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~ 502 (1349)
..|..||.....+|+++-|+++|+++-..-...+--.......-+..|+.+....|++.-|..+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3566677777777777777777766543221110000000123344555555556665555443
No 419
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=59.62 E-value=58 Score=40.60 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHH
Q 000695 607 LDYINPSHDTKGRNVSTLKRKT 628 (1349)
Q Consensus 607 L~~Lg~iy~aqGdyEEAle~ye 628 (1349)
++|+|.+.--+|+-.+-++.-.
T Consensus 152 ~NFvGLiiGPRG~TqK~lE~et 173 (554)
T KOG0119|consen 152 INFVGLIIGPRGNTQKRLERET 173 (554)
T ss_pred cceeEEEecCCccHHHHHHHHh
Confidence 4677777777777766555433
No 420
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=59.48 E-value=27 Score=45.40 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000695 222 CIHEMIVRAFKHIIQ 236 (1349)
Q Consensus 222 ~i~EMIARAaKhILR 236 (1349)
-++.=|+|+.+|.++
T Consensus 64 YVIDSIVRqsrhq~~ 78 (894)
T KOG0132|consen 64 YVIDSIVRQSRHQFG 78 (894)
T ss_pred EEehHHHHHHHHhhc
Confidence 344444455555444
No 421
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=1.8e+02 Score=39.01 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000695 400 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 400 ~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~ 470 (1349)
+.+-.+|...|+|++|+++.+..-+. .-..+..-|.+|+..++|..|-++|-+.+.-++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 34567889999999888877654221 2245777899999999999999998887665443
No 422
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=59.26 E-value=1.9e+02 Score=34.90 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHH
Q 000695 350 SSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 386 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qG---------dyeEAlel~eeALel~eq 386 (1349)
....+-.++++|..+.+.+ .+.+|..+|++|-.+++-
T Consensus 103 ~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 103 AFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777665433 366788888888776653
No 423
>PRK14707 hypothetical protein; Provisional
Probab=59.06 E-value=89 Score=45.18 Aligned_cols=194 Identities=14% Similarity=0.014 Sum_probs=115.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGA--YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 439 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~a--y~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ 439 (1349)
.++-...+|-++-.+-.-++.+..++. ..+....+ -..++.++..++++.+...+-.-|..+..++.. ++....
T Consensus 923 N~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~--~~~LR~ 998 (2710)
T PRK14707 923 TALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD--EPALRN 998 (2710)
T ss_pred HHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc--cHHHHh
Confidence 333344455444444444444444442 22333222 345677777777887777766666666665422 222222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000695 440 --SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 515 (1349)
Q Consensus 440 --ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~--al~NLA~iy~~lGdydeAle~LekALei~ekllG 515 (1349)
.-..++.++..+.+|.++-.+-.-++.+...+-+ .+.... .-..++.++..+.+|.+.-.+-.-+..+...+..
T Consensus 999 al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~ 1076 (2710)
T PRK14707 999 ALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSD 1076 (2710)
T ss_pred hcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhc
Confidence 2246788888888887776666667766666532 233222 2346788888888988776666666666655543
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 000695 516 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 561 (1349)
Q Consensus 516 ~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp 561 (1349)
......+..-..+|.++..+-+|.+.-.+.+.++.+.....+..++
T Consensus 1077 d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l 1122 (2710)
T PRK14707 1077 DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGL 1122 (2710)
T ss_pred cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccch
Confidence 3333344555678888888888888777777777777666444443
No 424
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.65 E-value=10 Score=28.17 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 000695 397 GAYSLLAVVLYHTGDFNQATIYQQK 421 (1349)
Q Consensus 397 ~ay~~LA~ay~~lGdyeeAle~~qK 421 (1349)
.++..||.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3678899999999999999988763
No 425
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.34 E-value=8.1e+02 Score=38.16 Aligned_cols=115 Identities=11% Similarity=0.042 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HHHHhHHHHHHHHhccCCCchhhh
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY----FESKAFEQQEAARNGTRKPDASIA 596 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La~----L~qk~~eqAEAl~~~a~a~d~~ia 596 (1349)
....|+.+|.+....|....--.+..-|+..+.+.++.-.....++..-+.+ ..+...+....++..... +....
T Consensus 2728 ~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sT-Nl~yF 2806 (3550)
T KOG0889|consen 2728 LYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIEST-NLMYF 2806 (3550)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc-cHHHH
Confidence 3444555555554444444433444445555555555444444444433321 111122333333321111 11111
Q ss_pred hcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 597 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 597 ~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.....++.+..-|....+.|++++|-+.|..|+++...+.
T Consensus 2807 --~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~ 2846 (3550)
T KOG0889|consen 2807 --SDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLG 2846 (3550)
T ss_pred --hhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhH
Confidence 1124667788888888999999999999999999865543
No 426
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=56.31 E-value=2.4e+02 Score=34.19 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000695 351 SADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 387 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qG---------dyeEAlel~eeALel~eqv 387 (1349)
...+-.+|++|..+.+.+ .+.+|..+|++|-..++-+
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 148 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYI 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 444667777777765433 3677888888887765543
No 427
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.86 E-value=2.3e+02 Score=36.06 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcC
Q 000695 522 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 522 A~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG 557 (1349)
+.-++.+|..|...++|.+|+.+|.+|+..+....+
T Consensus 422 afRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 422 AFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678999999999999999999999988877654
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.94 E-value=1.1e+02 Score=36.42 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCC
Q 000695 481 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 560 (1349)
Q Consensus 481 ~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dh 560 (1349)
..+...+..|...|.+.+|+.+.++++.+. +..-..+..|-.+|..+||--.|..+|.+--..+.+.+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld--------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD--------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 445667888899999999999999999874 444566777888899999999999999998888888888654
Q ss_pred H
Q 000695 561 L 561 (1349)
Q Consensus 561 p 561 (1349)
.
T Consensus 352 d 352 (361)
T COG3947 352 D 352 (361)
T ss_pred c
Confidence 3
No 429
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=54.73 E-value=6e+02 Score=32.96 Aligned_cols=176 Identities=15% Similarity=0.002 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000695 351 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 430 (1349)
Q Consensus 351 ss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Eril 430 (1349)
..+...+..........|+++...-+|++++--+. ..-..+...+......|+..-|-..++++.++.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~---- 361 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIH---- 361 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc----
Confidence 34455555555666788999999999999875532 223456667777777799999999898888875
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 431 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 431 G~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
.+.+..+...-|.+....|++..|...|++...-+ |....+-..-+.+..++|+.+.+-. +...+...
T Consensus 362 ---~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~ 429 (577)
T KOG1258|consen 362 ---VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELYSSI 429 (577)
T ss_pred ---CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh
Confidence 34455666677888889999999999999887632 4444444455566777888887764 33333322
Q ss_pred HHhcCCCcH-HHHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHH
Q 000695 511 QRLLGPDHI-QTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 511 ekllG~dhp-~tA~a~~nLA~ay-~~lGdydEAie~lekALeI~ 552 (1349)
.-|..+. .+...+...+... .-.++.+.|...+.++.++.
T Consensus 430 --~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 430 --YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred --cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 1123332 3344555666654 45688888999888888764
No 430
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=54.72 E-value=2.6e+02 Score=34.04 Aligned_cols=39 Identities=13% Similarity=-0.035 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000695 349 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 387 (1349)
Q Consensus 349 ~sss~A~~LlelG~~yl~qG---------dyeEAlel~eeALel~eqv 387 (1349)
.....+-.+|++|-.|.+.| .+.+|..+|++|-..++.+
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l 156 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYL 156 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455777888887776443 2567888888877665533
No 431
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.54 E-value=4.8e+02 Score=31.80 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=63.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000695 405 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 484 (1349)
Q Consensus 405 ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~ 484 (1349)
+....+|.++|++++.+.++-....--+ ..+......+|.++...|+..++.+.+...-.......+- .+.+-..|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence 3445569999999999988766543221 2466777889999999999999999998888776665443 233444555
Q ss_pred HHHHH-HHHCCCHHHH
Q 000695 485 NVAMM-EEGLGNVHVA 499 (1349)
Q Consensus 485 NLA~i-y~~lGdydeA 499 (1349)
.++.- |...|++..+
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 56554 4556666543
No 432
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.53 E-value=5.8e+02 Score=32.77 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 477 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP 477 (1349)
+|+.+-..+...+.++. ....+++...+.. .|.-+....+-|..+...|+.+.|+.+++.++....+.
T Consensus 233 ~y~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ------ 300 (546)
T KOG3783|consen 233 CYYQFISFVLGTPNPDG--EECEKALKKYRKR----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQ------ 300 (546)
T ss_pred HHHHHHHHHcCCCCccH--HHHHHHhHHHHHh----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHH------
Confidence 34444445555555554 4444454444433 34455667788889999999888999998888732221
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 478 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 478 ~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
-..-.++.+|.++..+.+|..|..++....+..
T Consensus 301 ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 301 VKSLMVFERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 124567788999999999999999888777664
No 433
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.54 E-value=1e+02 Score=33.22 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000695 396 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 475 (1349)
Q Consensus 396 A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~d 475 (1349)
...+..+..+-...++.+++..++.. +.+. .|.....-.--|.++...|+|.+|+.+++....- ..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~ 75 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------AG 75 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CC
Confidence 34444555555557888888776653 3332 3666666777899999999999999999887652 12
Q ss_pred ChhHHHHHHHHHHHHHHCCCHH
Q 000695 476 HPNTAATYINVAMMEEGLGNVH 497 (1349)
Q Consensus 476 hP~~a~al~NLA~iy~~lGdyd 497 (1349)
+. ....-.++.|+..+|+.+
T Consensus 76 ~~--p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 76 AP--PYGKALLALCLNAKGDAE 95 (153)
T ss_pred Cc--hHHHHHHHHHHHhcCChH
Confidence 22 233334788888888743
No 434
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.38 E-value=75 Score=43.04 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHCCC
Q 000695 603 VSDLLDYINPSHDTKGR 619 (1349)
Q Consensus 603 vaelL~~Lg~iy~aqGd 619 (1349)
..+++..||.-+...|+
T Consensus 586 ~~elc~~Lg~rl~~~g~ 602 (1049)
T KOG0307|consen 586 FSELCDMLGDRLENAGD 602 (1049)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 44555555555555554
No 435
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=52.89 E-value=2.1e+02 Score=34.77 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
.+.+++..|..+...+++.+|+..++.|...+
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 45566666666666777777777777776544
No 436
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=52.57 E-value=2.6e+02 Score=33.83 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
.+.+++..|..+...+++.+|+.+++.|...++
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~ 275 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILK 275 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHH
Confidence 345556666666677778888888777776543
No 437
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.62 E-value=1.1e+02 Score=32.65 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~-~a~al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
...+.+++|+++....+.+. .++.+.+++.++...||. .-.+++.||.-+.++++|+.|+.|....|+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 56778999999988766542 334444444444324444 4567778999999999999999999888775
No 438
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=51.48 E-value=1.4e+02 Score=39.35 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=5.7
Q ss_pred ccccccCCCCcccC
Q 000695 1076 PVNMTLHPRPATVL 1089 (1349)
Q Consensus 1076 ~~~~~~~~~~~~~~ 1089 (1349)
|+|| .||-|.++.
T Consensus 606 p~~~-~~ppPgf~P 618 (894)
T KOG0132|consen 606 PGPM-WHPPPGFVP 618 (894)
T ss_pred CCcc-CCCCCCCCC
Confidence 3444 244444444
No 439
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=50.81 E-value=2.3e+02 Score=34.49 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000695 412 FNQATIYQQKALDINE 427 (1349)
Q Consensus 412 yeeAle~~qKALeI~E 427 (1349)
+..|..+|++|--+++
T Consensus 131 lK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 131 IEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788887765543
No 440
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=49.72 E-value=4e+02 Score=29.44 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=69.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000695 402 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 481 (1349)
Q Consensus 402 LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~ 481 (1349)
+-..-..-|.|.+|..++.+.++.- ...+...+|..+++|.....+-..-..--.+..+.+--...+..|..+.
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWat 172 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWAT 172 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHH
Confidence 3344556789999999999998863 3466788999999999877653322222233333332333455677766
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000695 482 TYINVAMMEEGLGNVHVALRYLHKALKC 509 (1349)
Q Consensus 482 al~NLA~iy~~lGdydeAle~LekALei 509 (1349)
+-...|..-...|.-.+|+++++..+.-
T Consensus 173 AtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 173 ATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6666777777888899999999877654
No 441
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=49.26 E-value=3.3e+02 Score=32.82 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHh
Q 000695 350 SSADGRQLLESSKTALDKGK---------LEDAVTYGTKALAKLVAV 387 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGd---------yeEAlel~eeALel~eqv 387 (1349)
....+-.+|++|-.+.+.+. +.+|..+|++|-.+++-+
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777766644331 467888888887665433
No 442
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=49.19 E-value=26 Score=42.10 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 443 DLAVFYYRLQHTELALKYVKRALYLLHLTCGP------S-----HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 443 NLA~ly~~lGdyeeALe~yerALel~e~l~G~------d-----hP~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
+.+.-.+..++|..|..-|.+++......-.. + .......+.+++.+-...+.+..|+.....+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 45566788889999998888888765421100 0 112245667888888999999999888777766
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000695 512 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 571 (1349)
Q Consensus 512 kllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~T~eal~~La 571 (1349)
+.......++..+..|..+.++++|++.++.|... .+++......+....
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELENVR 353 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHHHhh
Confidence 23456778999999999999999999999988755 356655555444443
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.88 E-value=18 Score=41.25 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 000695 487 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 551 (1349)
Q Consensus 487 A~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI 551 (1349)
+.+....++.+.|.+.|.+|+++. +..+..|+.+|......|+++.|.+.|++.+++
T Consensus 2 a~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667889999999999999986 667889999999999999999999999998876
No 444
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.86 E-value=5.7e+02 Score=31.19 Aligned_cols=69 Identities=13% Similarity=-0.059 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------------hcCCCCchhHHHHHHHHHHHHHcCCHH
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDINER-------------------------ELGLDHPDTMKSYGDLAVFYYRLQHTE 455 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI~Er-------------------------ilG~Dhpdta~ay~NLA~ly~~lGdye 455 (1349)
.-|.+++..++|.+....+..|-..++. .++....+.....+.+|.-|....+++
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~ 142 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSA 142 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchh
Confidence 4467777777777666555444332221 122333445566677888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000695 456 LALKYVKRALYLLH 469 (1349)
Q Consensus 456 eALe~yerALel~e 469 (1349)
.|+--|+|+....+
T Consensus 143 ~ArVEfnRan~rQ~ 156 (449)
T COG3014 143 KARVEFNRANERQR 156 (449)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888888876543
No 445
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.97 E-value=9.9e+02 Score=33.53 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=12.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH
Q 000695 489 MEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 489 iy~~lGdydeAle~LekALei~ 510 (1349)
++...++...|..+..+|.+..
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHHH
Confidence 3445566666666665555543
No 446
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=47.64 E-value=1.3e+02 Score=36.12 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~ 555 (1349)
.+.+++..|..+...+++.+|+.+++.|...++..
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45566667777777788888888887777666543
No 447
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.28 E-value=2.7e+02 Score=33.08 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCHHHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000695 485 NVAMMEEGLGNVHVA-LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 546 (1349)
Q Consensus 485 NLA~iy~~lGdydeA-le~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~le 546 (1349)
|++.++...+.-+.. ..+.++|++...+. |.........+..||..+..-++..+|..||-
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 455555555443333 34566677766553 22222234567778888888888888888874
No 448
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=46.99 E-value=2.2e+02 Score=31.33 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 437 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdt 437 (1349)
+++-..-+..|.|.+|..++.+.++.- ...+...+|..++.|.+...|-.--+.--.+......-......|-.
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 334445567889999999999998773 34577888999999988876544333333444433332233444555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000695 438 MKSYGDLAVFYYRLQHTELALKYVKRALY 466 (1349)
Q Consensus 438 a~ay~NLA~ly~~lGdyeeALe~yerALe 466 (1349)
+.+-...|..-...|.-.+|+++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 55555566677788999999999887765
No 449
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.49 E-value=7.5e+02 Score=31.75 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHhcc
Q 000695 606 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 606 lL~~Lg~iy~aqGdyEEAle~yekALeL~~k 636 (1349)
.+++|+..|..+++|.+|+..|.+|......
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe 454 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQE 454 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999987654
No 450
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=46.00 E-value=3.2e+02 Score=33.25 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+.+++..|..+...+++.+|+.+++.|.++.
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666544
No 451
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.80 E-value=1.1e+02 Score=29.07 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 386 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eq 386 (1349)
.+..+...|..+-..|+|++|+.+|.++++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4566777788888999999999999999998876
No 452
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=45.77 E-value=1.5e+02 Score=36.26 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=10.4
Q ss_pred cCCCCCCCccCCCC---CCCC
Q 000695 1151 NGNSNVPEFIPGPF---LPGY 1168 (1349)
Q Consensus 1151 ~~~~~~~~~~~~~~---~~~~ 1168 (1349)
|...-+--|||.++ |.|-
T Consensus 425 N~kaElT~~VPa~lRVRRE~~ 445 (487)
T KOG4672|consen 425 NLKAELTRLVPAQLRVRREGD 445 (487)
T ss_pred ccchHHHhhcchheeeeccCC
Confidence 34455566777666 5554
No 453
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.74 E-value=2e+02 Score=39.08 Aligned_cols=54 Identities=20% Similarity=0.019 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHH
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV 405 (1349)
Q Consensus 350 sss~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~a 405 (1349)
....++.....|..|+..|.+..|++.|..|++++... .++...+.+|-....|
T Consensus 241 kksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t--~DyLWlg~AldG~tVC 294 (1235)
T KOG1953|consen 241 KKSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKAT--GDYLWLGLALDGFTVC 294 (1235)
T ss_pred HhhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhh--hhheeehhhccchhHH
Confidence 34457777888999999999999999999999998876 5666666665543333
No 454
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.58 E-value=43 Score=39.57 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000695 402 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 467 (1349)
Q Consensus 402 LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel 467 (1349)
.|.-.+..|+.++|..+|..|+.+ .|....++..+|.+.....+.-+|-.||-+||.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 334445679999999999999987 3556677888999999999999999999999875
No 455
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=45.55 E-value=54 Score=40.72 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCccCCCCCCCCCCcCCCCCcccCCCC-----CCCccccccCCCCCCCccCCCCCCCCccc
Q 000695 1097 SSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFH-----HNHFSWQCNGNSNVPEFIPGPFLPGYHPM 1171 (1349)
Q Consensus 1097 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1349)
+-|||-.||+|.||.-.+-..-- |+++ +.+.| |+|-+ -|++-=|-.||+
T Consensus 420 ~~~~~~~ps~p~tPSs~~ads~n----------~a~~----s~a~h~l~~kp~~h~------------tP~~~~q~~~p~ 473 (661)
T KOG2070|consen 420 SVPSHTLPSHPVTPSSKHADSKN----------PAPL----SPAYHTLPHKPSHHG------------TPHTTIQNWGPL 473 (661)
T ss_pred cccccCCCCCCCCcccccccCCC----------CCCC----CcccCcCCCCCCCCC------------CCCCCccccCCC
Confidence 55899999999998655433211 1111 22223 44433 488877888999
Q ss_pred ccCCCCCccccCCCcccccccccCCCC
Q 000695 1172 EFSVPPPVVEPILDPIMQPKAQSGDLD 1198 (1349)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1198 (1349)
+=|-. .-|-+++.+.|..-|...-
T Consensus 474 ~ppk~---~kp~s~S~~~pNmKfa~pL 497 (661)
T KOG2070|consen 474 EPPKT---PKPWSLSCLRPNMKFAPPL 497 (661)
T ss_pred CCCCC---CCCcchhhcCCCcccCCCC
Confidence 85444 4899999999977666533
No 456
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.30 E-value=8.3e+02 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=14.3
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 000695 361 SKTALDKGKLEDAVTYGTK 379 (1349)
Q Consensus 361 G~~yl~qGdyeEAlel~ee 379 (1349)
..+++..|+|+.|+.++.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 3566788999999998876
No 457
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.63 E-value=43 Score=28.61 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 000695 525 YHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 525 ~~nLA~ay~~lGdydEAie~lekALe 550 (1349)
.+.||.+|..+|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999988773
No 458
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=43.95 E-value=6.7e+02 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
.+.+++..|......+++.+++.+++.|...+.+
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566777777777778888888888888876544
No 459
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.77 E-value=1.1e+02 Score=38.29 Aligned_cols=125 Identities=18% Similarity=0.086 Sum_probs=72.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 441 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay 441 (1349)
......|++-.|-.-...+|..+. ..|. .....+.++.++|+|+.|......+-.+ +|..+ .+.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~-----~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~----~~s~~----~~~ 360 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQ-----QDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI----IGTTD----STL 360 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCC-----CCch---hhHHHHHHHHHhhhHHHHHHHhhchhhh----hcCCc----hHH
Confidence 445678888888877777776532 2233 3445688899999999998876655333 23222 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 442 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 442 ~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
..+-.-++.+|++++|+....-.|.- . -..+++. .--|.....+|-+++|+-++++.+.+.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~---~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVL---TVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhe---eeecccHHHHhHHHHHHHHHHHHhccC
Confidence 33344566778888887665444321 0 0123322 222333345566777777777777654
No 460
>COG3899 Predicted ATPase [General function prediction only]
Probab=43.40 E-value=8.2e+02 Score=33.34 Aligned_cols=109 Identities=15% Similarity=-0.018 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 398 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM-KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 476 (1349)
Q Consensus 398 ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta-~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dh 476 (1349)
.+...|.-....-.+.+|+.++..++.+.......+..... ..+......-+..+++..+..++...+... ...
T Consensus 441 l~l~Ag~ka~~~~a~~~A~~~~~~~~~ll~~~~~~~~~~l~l~~~~~~~~~a~~~~~~~~~e~~~~~~~~~~-----~~~ 515 (849)
T COG3899 441 LNLLAGRKAKLRSAYSAAISYLERGLSLLLADAWQNQYLLALMLHRLAAENAYLRGQFELSESLIEVVLICA-----ASN 515 (849)
T ss_pred HHHhcchhhhhchhhHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHh-----hhh
Confidence 33333444444455778888888888776543222221111 111111222233344455544444222211 112
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000695 477 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 511 (1349)
Q Consensus 477 P~~a~al~NLA~iy~~lGdydeAle~LekALei~e 511 (1349)
...+..+......+..+++..+|+..-..++....
T Consensus 516 ~~~~~~~~~~i~~~~~q~~~~~ai~~~~~~l~~l~ 550 (849)
T COG3899 516 LDGAKVYELVIQAYTAQKQRLEAIALGQNALQLLG 550 (849)
T ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 23344555555555566777777776555555543
No 461
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.35 E-value=1.3e+02 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
..+..+...|..+-..|+|++|+.+|.++++.+...+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888899999999999999999987754
No 462
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=43.31 E-value=79 Score=38.58 Aligned_cols=23 Identities=35% Similarity=0.623 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCccCCccCCC
Q 000695 1100 HQPYPSPPSTPNMMQPLPFMYPP 1122 (1349)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1349)
--||+.||.+|-+|-|-.-|=||
T Consensus 363 r~P~gppp~~P~~l~p~~p~Gp~ 385 (487)
T KOG4672|consen 363 RMPPGPPPGPPHGLSPPNPMGPP 385 (487)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Confidence 33444444666666655444444
No 463
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=43.23 E-value=95 Score=37.12 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=24.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccCCccCCCCCC
Q 000695 1088 VLPTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQ 1125 (1349)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1125 (1349)
-.|+-+||-.|||-+-|+|-..|.-.|==||.||| +|
T Consensus 288 ~~ppRP~m~l~phl~gppPga~pPaph~NpaffpP-P~ 324 (498)
T KOG4849|consen 288 GQPPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPP-PQ 324 (498)
T ss_pred CCCCCcccccCcccCCCCCCCCCCCcccCcccCCC-CC
Confidence 34555778888887777766555555556788888 44
No 464
>PRK09169 hypothetical protein; Validated
Probab=43.09 E-value=4.9e+02 Score=38.75 Aligned_cols=119 Identities=16% Similarity=0.010 Sum_probs=51.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000695 444 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 523 (1349)
Q Consensus 444 LA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~ 523 (1349)
|+.++..+.+|.+.-.+-.-++.+...+....+......-..++.++..+.+|.+.-.+-.-+..+..++........+.
T Consensus 669 LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~ 748 (2316)
T PRK09169 669 LANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAM 748 (2316)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhc
Confidence 34444444444333334444444443332222222222334566666666666554333222333333332111222233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 000695 524 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 562 (1349)
Q Consensus 524 a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp~ 562 (1349)
.-..|++++..+-+|-+.-.+.+-++.+........++.
T Consensus 749 ~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~ 787 (2316)
T PRK09169 749 NPQGLANSLNALSKWPQEPACQQAALLLAERLGSAGLPF 787 (2316)
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCch
Confidence 344566666666666554444455555554443334443
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.05 E-value=3.4e+02 Score=36.57 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~Er 428 (1349)
....+.|++.|+|+.|+++.+..-.. .-.++..-|..|++.++|..|.++|-+.+.-++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 34458899999999998887654221 2236788899999999999999999888766554
No 466
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.99 E-value=2.3e+02 Score=27.05 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 554 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk 554 (1349)
..+...|.-+-..|+|++|+.+|+.+++.+..
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33445566667889999999999999999988
No 467
>PLN03162 golden-2 like transcription factor; Provisional
Probab=42.66 E-value=58 Score=39.01 Aligned_cols=37 Identities=27% Similarity=0.137 Sum_probs=20.0
Q ss_pred cCCC-CCCCCccccCccccccccCC---------CCcccCCCCCCCC
Q 000695 1060 MTLP-PGPGAVTAVAPWPVNMTLHP---------RPATVLPTVNPMC 1096 (1349)
Q Consensus 1060 ~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 1096 (1349)
|..| ++|.+.|+.+|=|+--+.|+ |+-||=++.-||-
T Consensus 329 igfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mW 375 (526)
T PLN03162 329 IHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMW 375 (526)
T ss_pred cCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccc
Confidence 4444 34667777777666423332 4456655555664
No 468
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=42.65 E-value=84 Score=39.70 Aligned_cols=80 Identities=21% Similarity=0.124 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000695 452 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 528 (1349)
Q Consensus 452 GdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lG---dydeAle~LekALei~ekllG~dhp~tA~a~~nL 528 (1349)
+.+..|+..|.+++.. .+.....|.|.|.++.+++ +.-.|+.-...|+++. +....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln--------~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN--------PSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC--------hHHHHHHHHH
Confidence 3455677777777763 3555677788888887764 3444555555555442 5567889999
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 000695 529 AIALSLMEAYPLSVQHEQT 547 (1349)
Q Consensus 529 A~ay~~lGdydEAie~lek 547 (1349)
+.++..++++.+|++....
T Consensus 452 a~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHhhHHHhhhhHHH
Confidence 9999999999999987653
No 469
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=42.36 E-value=2.4e+02 Score=25.63 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcC
Q 000695 523 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 523 ~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG 557 (1349)
..+...|.-+-..|++++|+.+|.+|++.+...+.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 33445566667789999999999999999877654
No 470
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=41.74 E-value=6.5e+02 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=16.7
Q ss_pred cccCCCCCCccc--cccccceeccCCCCCCCCcc
Q 000695 1039 ASAVPFNPSPAV--ARASAVAINMTLPPGPGAVT 1070 (1349)
Q Consensus 1039 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1070 (1349)
+++-||||-..- --.+|+.|-|.+||-|..++
T Consensus 246 ~~~lp~~~~nq~~s~~~~p~~~~~~~pp~~~~~~ 279 (518)
T KOG1830|consen 246 YSSLPPNPKNQLASNMVAPSGMTMHHPPQPPVMP 279 (518)
T ss_pred hhccCCCcccccccccCCCcCCCCCCCCCCCccc
Confidence 444455543322 23556666677777555444
No 471
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.17 E-value=50 Score=28.24 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000695 358 LESSKTALDKGKLEDAVTYGTKALA 382 (1349)
Q Consensus 358 lelG~~yl~qGdyeEAlel~eeALe 382 (1349)
+.+|+.|+..|+++.|..++++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999884
No 472
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.82 E-value=2e+02 Score=27.46 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcC
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 557 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG 557 (1349)
.+..+...|.-+-..|++.+|+.+|++|++.+.+.+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677778899999999999999999988653
No 473
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.46 E-value=2.2e+02 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc-CCCCHHHHHH
Q 000695 525 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDA 566 (1349)
Q Consensus 525 ~~nLA~ay~~lGdydEAie~lekALeI~kk~L-G~dhp~T~ea 566 (1349)
+...|.-+-..|+|++|+.+|.++++.|...+ ...++.....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~ 51 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKN 51 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 44455566678999999999999999998755 3444444444
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.02 E-value=2e+02 Score=29.65 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000695 452 QHTELALKYVKRALYLLHLTC-GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 530 (1349)
Q Consensus 452 GdyeeALe~yerALel~e~l~-G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ 530 (1349)
+.-..-..++++++..+...- =.+++....++...|... ..+.+.|..... +-.|.. .+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~---~~IG~~---~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYS---KGIGTK---LALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHH---HTTSTT---BHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHH---cCccHH---HHHHHHHHHH
Confidence 445555678888887764311 123455556665555432 277777775543 334544 4667778899
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 000695 531 ALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 531 ay~~lGdydEAie~lekAL 549 (1349)
.+...|++.+|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 475
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=39.92 E-value=1.6e+02 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
..+..++..|...-..|+|++|+.+|.++++.+....
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999999999887654
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.83 E-value=8.2e+02 Score=33.47 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALA 382 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALe 382 (1349)
....+..++..|...|+.++|+.++.+...
T Consensus 503 k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 503 KSKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 344577778889999999999999988776
No 477
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.49 E-value=1e+02 Score=39.56 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=34.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000695 407 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 468 (1349)
Q Consensus 407 ~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~ 468 (1349)
..+|+++.|..+..++-. ..-|..||.+....+++..|.++|.+|..+-
T Consensus 648 l~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 456667766665555422 2346778888889999999999998887653
No 478
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.32 E-value=46 Score=38.07 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=49.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000695 362 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 425 (1349)
Q Consensus 362 ~~yl~qGdyeEAlel~eeALel~eqvlG~dhp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI 425 (1349)
......++.+.|.++|.+++.+ -|+.+..|..+|......|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3455789999999999999987 4677889999999999999999999999999887
No 479
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=38.05 E-value=8.6e+02 Score=30.33 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 553 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~k 553 (1349)
.+.+++.+|......+++.+|+.+++.|...+.
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~ 327 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELE 327 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHH
Confidence 466777777778888889999998888887543
No 480
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=37.61 E-value=1.3e+02 Score=28.70 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
.|..+...|..+-..|++.+|+.+|+++++++.++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999999987764
No 481
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.37 E-value=1.3e+02 Score=27.38 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
..+..+...|..+-..|++++|+.+|.+++..+...+
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3466778888889999999999999999999876553
No 482
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=37.26 E-value=1.9e+02 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 352 s~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
..+..++..|...-..|+|++|+.+|.++++.+...+
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999987654
No 483
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=36.48 E-value=8.4e+02 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhc
Q 000695 521 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 556 (1349)
Q Consensus 521 tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~L 556 (1349)
.+.+++.+|......+++.+|+.+++.|...++...
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 567778888888889999999999999998766543
No 484
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.29 E-value=64 Score=35.79 Aligned_cols=45 Identities=36% Similarity=0.619 Sum_probs=23.8
Q ss_pred ccccccccCCCCcccCCCCCC-CCCCCCCCCCCCCCCCCCCccCCccCCCCCCC
Q 000695 1074 PWPVNMTLHPRPATVLPTVNP-MCSSPHQPYPSPPSTPNMMQPLPFMYPPYTQP 1126 (1349)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1126 (1349)
.|.- |-.-.||.+.-|-.++ +-++| .+-|=|.-|..+|-|||-.|
T Consensus 31 DWs~-mQAYyg~~~~p~~f~s~va~sp-------~phPYMWG~~q~mmPPYGtP 76 (189)
T PF07777_consen 31 DWSA-MQAYYGPGAPPPYFNSAVASSP-------QPHPYMWGPQQPMMPPYGTP 76 (189)
T ss_pred ccHh-hhhccCCCCCCcccCcccCCCC-------CCCCcccCCCccccCCCCCC
Confidence 7887 8877776522222222 33333 33344555556666777643
No 485
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=34.93 E-value=4.9e+02 Score=33.78 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=73.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHH
Q 000695 430 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-ALK 508 (1349)
Q Consensus 430 lG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdydeAle~Lek-ALe 508 (1349)
++..++....++. ++..+...+....|.-.+..++. -.+..+.++.+||......|..-.++..+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLS--------VNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHh--------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4566777766666 88888888888777666665554 2466678888998888777765555444433 444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 000695 509 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 552 (1349)
Q Consensus 509 i~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~ 552 (1349)
..... . .-......++.++..+..+|+..++...++++.++.
T Consensus 131 ~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LSPDN-A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cCcch-H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 32110 0 001112233447888899999999999888888775
No 486
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.74 E-value=1.2e+02 Score=29.22 Aligned_cols=37 Identities=16% Similarity=-0.065 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000695 437 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 473 (1349)
Q Consensus 437 ta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G 473 (1349)
.+..+.+.|..+-..|+.++|+.+|++++..+.....
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3444556666667779999999999999998877543
No 487
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.15 E-value=4.1e+02 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=28.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhc-CCCCHHHHHHH
Q 000695 528 IAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAA 567 (1349)
Q Consensus 528 LA~ay~~lGdydEAie~lekALeI~kk~L-G~dhp~T~eal 567 (1349)
.|.-.-..|+|++|+.+|..+++.|...+ .+.++.....+
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~l 52 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEAL 52 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 34445567999999999999999998755 44556554443
No 488
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=33.97 E-value=1.5e+02 Score=35.68 Aligned_cols=36 Identities=3% Similarity=-0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcccc
Q 000695 603 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 603 vaelL~~Lg~iy~aqGdyEEAle~yekALeL~~kl~ 638 (1349)
.+.++++.|..+...+++-+|+.+++.|........
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 455677778888889999999999999998866655
No 489
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.89 E-value=1.6e+03 Score=31.80 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCchHHHHHhhhhhhhhhcCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000695 330 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK 383 (1349)
Q Consensus 330 ~~F~~eDIl~LvPvvK~s~~sss~A~~LlelG~~yl~qGdyeEAlel~eeALel 383 (1349)
.+..++.|..+.-.++....+..+.+.. ++...|+...|..+..+|.+.
T Consensus 1506 lp~tpeqi~~L~~~I~e~v~sL~nVd~I-----L~~T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1506 LPLTPEQIQQLTGEIQERVASLPNVDAI-----LSRTKGDIARAENLQSEAERA 1554 (1758)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHH-----HHhhhhhHHHHHHHHHHHHHH
Confidence 3445555555444444433333333332 244567777777777666554
No 490
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=33.80 E-value=8.5e+02 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 480 AATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 480 a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
+.+++.+|..+...+++.+|+.+++.|+...
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~ 281 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALELL 281 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666555543
No 491
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.58 E-value=4.9e+02 Score=26.83 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhcCChhHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Q 000695 499 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESK 576 (1349)
Q Consensus 499 Ale~LekALei~ekllG~dhp~tA~a~~nLA~-ay~~lGdydEAie~lekALeI~kk~-LG~dhp~T~eal~~La~L~qk 576 (1349)
-...|++.+.... .|.|......-|..-.. .+-..+....-...+++|+..+... .=.++++.+......+.+...
T Consensus 4 ~r~~~e~~i~~~~--~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~ 81 (126)
T PF08311_consen 4 QRQEFEEQIRSYE--EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSD 81 (126)
T ss_dssp HHHHHHHHHHCCG--GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSH
T ss_pred HHHHHHHHHHHcc--CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccC
Confidence 3445555555443 24444443333322211 1122244555567888888877442 113455554443333322221
Q ss_pred hHHHHHHHHhccCCCchhhhhcCCCcHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 000695 577 AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 631 (1349)
Q Consensus 577 ~~eqAEAl~~~a~a~d~~ia~k~h~svaelL~~Lg~iy~aqGdyEEAle~yekAL 631 (1349)
..+.-+-+..... -...+..|...|..+...|++++|.+.|++++
T Consensus 82 ~~~if~~l~~~~I----------G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 82 PREIFKFLYSKGI----------GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTT----------STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 1111111111111 11356678889999999999999999999875
No 492
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.54 E-value=1.4e+02 Score=28.70 Aligned_cols=34 Identities=24% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000695 401 LLAVVLYHTGDFNQATIYQQKALDINERELGLDH 434 (1349)
Q Consensus 401 ~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dh 434 (1349)
..|..+-+.|+.++|+.+|++++.+.++.+....
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444455668999999999999999888655544
No 493
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=33.54 E-value=69 Score=37.86 Aligned_cols=114 Identities=21% Similarity=0.284 Sum_probs=61.7
Q ss_pred ccccCCCCcccCCCCCCCCCCC-CCCCCCCCCCCCCCccCCccCCCCCCCCCCcCCCCCcccCCCCC-CC-ccccccCCC
Q 000695 1078 NMTLHPRPATVLPTVNPMCSSP-HQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHH-NH-FSWQCNGNS 1154 (1349)
Q Consensus 1078 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 1154 (1349)
|||+|||-+. .|.-.=| +.|-|-|+.-|-.-||.|.|-+.|+.--..=-|.||.|.=.--- .+ -+|-
T Consensus 6 dmt~~pgas~-----spF~aLPf~pp~pgP~~qp~wep~pP~~~~~fppg~PLvLsafP~tpLVagdgg~gpsgA----- 75 (328)
T PF12881_consen 6 DMTMNPGASM-----SPFTALPFPPPAPGPPHQPPWEPPPPLMTAAFPPGNPLVLSAFPRTPLVAGDGGPGPSGA----- 75 (328)
T ss_pred CcccCCCCCC-----CccccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccccccCCCCccccCCCCCCCCCC-----
Confidence 8999999321 1111112 33445555556566666877777765555555888876421110 00 0221
Q ss_pred CCCCccCCCCCCCCcccccCCCCCcccc-CCCcccccccccCCCCCCCC
Q 000695 1155 NVPEFIPGPFLPGYHPMEFSVPPPVVEP-ILDPIMQPKAQSGDLDSSCS 1202 (1349)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1202 (1349)
-... |--.||.+=+|+|.+..--+|=. .+=...-|-+++++.+.+.|
T Consensus 76 g~~n-VivqVrteg~pvep~qtQ~~VLtQ~pLnw~apga~~gg~~~P~P 123 (328)
T PF12881_consen 76 GPGN-VIVQVRTEGRPVEPPQTQNFVLTQAPLNWNAPGALCGGVECPAP 123 (328)
T ss_pred ccce-EEEEeecCCccCCCCccceeEeecccccccCCcCccCCCCCCCC
Confidence 1111 33457888899998877665532 22223456777777666544
No 494
>PRK12798 chemotaxis protein; Reviewed
Probab=33.32 E-value=1.1e+03 Score=29.68 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000695 479 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 510 (1349)
Q Consensus 479 ~a~al~NLA~iy~~lGdydeAle~LekALei~ 510 (1349)
...+|..+|..-.-.|+.+.|...-++|+.+.
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 34455566666666666666666666666654
No 495
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.70 E-value=2.5e+02 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 388 (1349)
Q Consensus 353 ~A~~LlelG~~yl~qGdyeEAlel~eeALel~eqvl 388 (1349)
.+..+...|...-..|++++|+.+|.++++.+....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 455566777778888999999999999999887765
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.64 E-value=78 Score=36.21 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=59.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCChh----hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000695 363 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 438 (1349)
Q Consensus 363 ~yl~qGdyeEAlel~eeALel~eqvlG~dhp~----~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta 438 (1349)
.+++.|+|+.|+++..-|++.-...-...... ++.-...-+...+..|..-+. .+.+....+. ........-.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHH
Confidence 45688999999999999997643321111111 222233334444455542221 1222222332 21222233345
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHH
Q 000695 439 KSYGDLAVFYY---------RLQHTELALKYVKRALYLLHL 470 (1349)
Q Consensus 439 ~ay~NLA~ly~---------~lGdyeeALe~yerALel~e~ 470 (1349)
..|-.+|..+. ..++...|+.++++|+.+..+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 66677787774 456888999999999997543
No 497
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.49 E-value=1.4e+03 Score=30.93 Aligned_cols=150 Identities=8% Similarity=-0.003 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000695 392 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 471 (1349)
Q Consensus 392 hp~~A~ay~~LA~ay~~lGdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l 471 (1349)
+.....++..|-.+++..|++++-...-+++.+++ +..+.+...|..==......+.-.++...|++|+..+..+
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 44455677778888888999887555444444442 1222222222211111112266778888888888643211
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000695 472 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 549 (1349)
Q Consensus 472 ~G~dhP~~a~al~NLA~iy~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekAL 549 (1349)
- ....++..+...+..+...++++.-...|.+||...-.... .....+.+|..+-..|...-..++-+.++...+
T Consensus 184 ~--iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 184 P--IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred h--HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0 01122333344444556678899999999999987533322 223345566666666655554455555555444
No 498
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=32.04 E-value=8.9e+02 Score=28.38 Aligned_cols=132 Identities=12% Similarity=0.000 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000695 418 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 497 (1349)
Q Consensus 418 ~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~iy~~lGdyd 497 (1349)
.++..+.+.-.....+. ...+..||..+...|+...|.-||--+-.........+.+.. ....+|. ... .+
T Consensus 99 ~Wre~lA~il~N~~~~~---~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~~~~~~~--~~~llg~--~~~--~~ 169 (284)
T PF12931_consen 99 NWRETLAIILSNRTPED---SQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPWLDDSNS--RFSLLGA--SSF--AS 169 (284)
T ss_dssp SHHHHHHHHHHTS---S---S-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBSSTTS----B--SSS-----T--TS
T ss_pred CHHHHHHHHHhCCCccc---HHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcccccccch--hhhhccC--Ccc--cc
Confidence 35555555443322222 234555999999999998888887654111100000011110 0011111 000 11
Q ss_pred HHHHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 000695 498 VALRYLHKALKCNQRL------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 561 (1349)
Q Consensus 498 eAle~LekALei~ekl------lG~dhp~tA~a~~nLA~ay~~lGdydEAie~lekALeI~kk~LG~dhp 561 (1349)
..--.+.+.++..... ++-.+ ........|.++...|..++|.+|++.....++. .+...+
T Consensus 170 ~~~~~~tEiyEya~~l~~~~~~~~~~~--l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~lk~-~~~~~~ 236 (284)
T PF12931_consen 170 PEAIILTEIYEYALSLSSNNPQFGLPH--LQPYKLQYASLLAEQGLLSEALKYCDAIASSLKS-LPKNSP 236 (284)
T ss_dssp HHHHHHHHHHHHHHHT---STT---CC--CHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT-S-TTSH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCcHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-CCccCh
Confidence 1111222333333332 11122 2333446799999999999999999877777653 344443
No 499
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=31.71 E-value=1.5e+03 Score=30.83 Aligned_cols=138 Identities=9% Similarity=-0.062 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000695 410 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 489 (1349)
Q Consensus 410 GdyeeAle~~qKALeI~ErilG~Dhpdta~ay~NLA~ly~~lGdyeeALe~yerALel~e~l~G~dhP~~a~al~NLA~i 489 (1349)
++-.++..+|.+||--+..+ .-.-+.+......+..+...++|+.-...|.+||......... -..+...|.-+...
T Consensus 164 ~~~~~v~~~~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~ 240 (881)
T KOG0128|consen 164 EERKEVEELFEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVT 240 (881)
T ss_pred cchhHHHHHHHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHH
Confidence 66777888888887532110 0001122222233333456678888999999998865433321 12234455555555
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--HHH-HhcCChhHHHHHHHHHHHHHHHh
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA--IAL-SLMEAYPLSVQHEQTTLQILRAK 555 (1349)
Q Consensus 490 y~~lGdydeAle~LekALei~ekllG~dhp~tA~a~~nLA--~ay-~~lGdydEAie~lekALeI~kk~ 555 (1349)
|...-..++-+.++...+.+- -++......|+... .++ ....+++.|+.-+.+.+-.+.+.
T Consensus 241 ~l~n~~~~qv~a~~~~el~~~-----~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~ 304 (881)
T KOG0128|consen 241 YLCNVEQRQVIALFVRELKQP-----LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL 304 (881)
T ss_pred HHHhHHHHHHHHHHHHHHhcc-----chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 555444455666666655542 22222233333332 222 23445555555555555544443
No 500
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.70 E-value=4.3e+02 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhcC-CCCHHH
Q 000695 527 AIAIALSLMEAYPLSVQHEQTTLQILRAKLG-PDDLRT 563 (1349)
Q Consensus 527 nLA~ay~~lGdydEAie~lekALeI~kk~LG-~dhp~T 563 (1349)
..|.-.-..|+|++|+.+|.+|++.+...+. ..++..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~ 48 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKS 48 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 3445556789999999999999999987652 334443
Done!