Query 000695
Match_columns 1349
No_of_seqs 688 out of 4337
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 17:57:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000695.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_464-468//hhsearch_pdb/000695hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 1.0 1 1 196.3 32.9 288 349-636 22-310 (311)
2 3edt_B KLC 2, kinesin light ch 1.0 1 1 196.1 25.6 271 364-634 11-282 (283)
3 3ulq_A Response regulator aspa 1.0 1 1 190.2 32.1 269 354-639 103-374 (383)
4 4a1s_A PINS, partner of inscut 1.0 1 1 189.7 29.9 277 352-638 84-377 (411)
5 3q15_A PSP28, response regulat 1.0 1 1 185.9 26.7 269 353-639 100-371 (378)
6 3sf4_A G-protein-signaling mod 1.0 1 1 183.8 29.3 276 353-638 46-341 (406)
7 4a1s_A PINS, partner of inscut 1.0 1 1 183.3 29.6 276 350-638 44-337 (411)
8 3sf4_A G-protein-signaling mod 1.0 1 1 177.5 29.0 276 350-635 83-379 (406)
9 3ro2_A PINS homolog, G-protein 1.0 1 1 176.5 29.0 276 353-638 42-337 (338)
10 3n71_A Histone lysine methyltr 1.0 1 1 171.5 21.1 148 403-550 316-463 (490)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=196.33 Aligned_cols=288 Identities=22% Similarity=0.219 Sum_probs=238.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79699999999999999929968999999999999988409998106999999999998329999999999999999999
Q 000695 349 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 349 ~~s~~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek 428 (1349)
.....+..++.+|..++..|++++|+.++++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 40689999999999999858999999999999999998708998899999999999999788999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 50999911699999999999991997999999999999999825999932899999999999998997999999999999
Q 000695 429 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 508 (1349)
Q Consensus 429 ~lG~Dhpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lGdyeeAle~LekALe 508 (1349)
..+.+++....++.++|.+|..+|++++|+.++++++.+.....+.+++....++.++|.++..+|++++|+.+|++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 80889759999999999999981869999999999999999865899818999999999999984897999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99883199948899999999999996489159999999999999996-09999999999999999999859999999942
Q 000695 509 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 587 (1349)
Q Consensus 509 i~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~-LGpdhp~ta~al~~La~L~qk~~eqAEAl~~~ 587 (1349)
+.....+.+++....++..+|.+|..+|++++|+.++++++.+.... ++..++........+..+.........+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99988188978899999999999998489899999999999999985578899321899999999997327555688888
Q ss_pred CCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 6999612330399739999999999999889969999999999987421
Q 000695 588 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 636 (1349)
Q Consensus 588 a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~k 636 (1349)
............++....++..+|.+|..+|++++|+.+|++++++..+
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 8888775037798039999999999999877999999999999998646
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=1.00 E-value=1 Score=196.14 Aligned_cols=271 Identities=21% Similarity=0.213 Sum_probs=222.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99929968999999999999988409998106999999999998329999999999999999999509999116999999
Q 000695 364 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 443 (1349)
Q Consensus 364 yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG~Dhpdta~ay~n 443 (1349)
....|++++|+.++++++.++.+..+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..+.+++....++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 47889778999999999999998639998789999999999999866699999999999999998738766699999988
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999991997999999999999999825999932899999999999998997999999999999998831999488999
Q 000695 444 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 523 (1349)
Q Consensus 444 LA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lGdyeeAle~LekALei~ekllG~dhp~tA~ 523 (1349)
+|.+|..+|++++|+.++++++.+.....+++++....++.++|.+|..+|++++|+.++++++.+.....+.+++..+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999981049999999999999999871999869999999999999985779999999999999999864999879999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC
Q ss_conf 999999999964891599999999999999960-9999999999999999999859999999942699961233039973
Q 000695 524 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 602 (1349)
Q Consensus 524 al~nLA~iy~~lGdyeEAle~lekALeI~kk~L-Gpdhp~ta~al~~La~L~qk~~eqAEAl~~~a~ald~~~a~k~h~s 602 (1349)
++.++|.+|..+|++++|+.++++++.+..... +..++........+..+.........+................++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998499788999999999998875388854368889999999986499636898899899999856878789
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999998899699999999999874
Q 000695 603 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 634 (1349)
Q Consensus 603 vaelL~~LA~iy~aqGdyeEAle~yeKALkL~ 634 (1349)
...++..+|.+|..+|++++|+.+|+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999998688999999999998740
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=190.17 Aligned_cols=269 Identities=12% Similarity=0.012 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999992996899999999999998840999810699999999999832999999999999999999950999
Q 000695 354 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 433 (1349)
Q Consensus 354 Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG~D 433 (1349)
...++..|..++..|++++|+.++++++.+.... ++....+.++..+|.+|..+|++++|+.++++|+.++... +..
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~ 179 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAY 179 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 9999999999998669999999999999998609--9899999999999999998088799999999999999867-664
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 91169999999999999199799999999999999982599993289999999999999899799999999999999883
Q 000695 434 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 513 (1349)
Q Consensus 434 hpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lGdyeeAle~LekALei~ekl 513 (1349)
.+..+.++.++|.+|..+|++++|+.++++++.+..... +.+..+.++.++|.+|..+|++++|+.++++|+++....
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 377998999999999985489999999999999998749--827899999999999987799999999999999989861
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCC
Q ss_conf 199948899999999999996489159999999999999996099999999999999999998599---99999942699
Q 000695 514 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE---QQEAARNGTRK 590 (1349)
Q Consensus 514 lG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La~L~qk~~e---qAEAl~~~a~a 590 (1349)
. +.+..+.++.++|.+|..+|++++|+.++++++.+...... +........|+.+.....+ ..+++......
T Consensus 258 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 258 N--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp T--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 6--55139999999999998879979999999999999988599---999999999999883887499999999999977
Q ss_pred CCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9612330399739999999999999889969999999999987421147
Q 000695 591 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 639 (1349)
Q Consensus 591 ld~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~q 639 (1349)
.......+++..+|.+|..+|++++|+.+|++++++..++..
T Consensus 333 -------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 333 -------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred -------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf -------687799999999999999788999999999999999987114
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=189.70 Aligned_cols=277 Identities=13% Similarity=0.085 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999929968999999999999988409998106999999999998329999999999999999999509
Q 000695 352 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 431 (1349)
Q Consensus 352 ~~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG 431 (1349)
..+..++.+|..++..|++++|+.++++++.+.... .+++..+.++..+|.+|..+|++++|+.++++++.+....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 159 (411)
T 4a1s_A 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-- 159 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--
T ss_conf 899999999999998789999999999999999871--5736799999999999998789999999999999999871--
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9991169999999999999199-----------------79999999999999998259999328999999999999989
Q 000695 432 LDHPDTMKSYGDLAVFYYRLQH-----------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 494 (1349)
Q Consensus 432 ~Dhpdta~ay~nLA~iy~~lGd-----------------yeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lG 494 (1349)
.+.+....++.++|.+|..+|+ +++|+.++++++.+..... +++..+.++.++|.+|..+|
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTT
T ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 0448899999999999998376111333100112106999999999999999999738--87999999999999999858
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 97999999999999998831999488999999999999964891599999999999999960999999999999999999
Q 000695 495 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 574 (1349)
Q Consensus 495 dyeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La~L~ 574 (1349)
++++|+.++++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .+......++..++.+.
T Consensus 238 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTY 313 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHH
T ss_conf 8299999999999999851--9967899999999999998768999999999999999876--98799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9859999999942699961233039973999999999999988996999999999998742114
Q 000695 575 SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 575 qk~~eqAEAl~~~a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~ 638 (1349)
...++..+|......................++..+|.+|..+|++++|+.+|++++++...++
T Consensus 314 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 314 TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9818899999999999999998798588999999999999980569999999999999985100
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=185.89 Aligned_cols=269 Identities=16% Similarity=0.063 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999299689999999999999884099981069999999999983299999999999999999995099
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG~ 432 (1349)
....++..|..++..|++++|+.++.+|+.+...+ .+.+..+.++..+|.+|..+|+++.|+.++++|+.+..+.. .
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~ 176 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-L 176 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-T
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-C
T ss_conf 99999999999999778999999999999998658--89189999999999999981990999999999999998678-8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99116999999999999919979999999999999998259999328999999999999989979999999999999988
Q 000695 433 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 512 (1349)
Q Consensus 433 Dhpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lGdyeeAle~LekALei~ek 512 (1349)
..+..+.++.++|.+|..+|++++|+.++++|+.+..... +....+.++.++|.+|..+|++++|+.++++|+.+...
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 3066999999999999985789999999999999999869--87789999998999998789999999999999998876
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHCCC
Q ss_conf 3199948899999999999996489159999999999999996099999999999999999998599---9999994269
Q 000695 513 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE---QQEAARNGTR 589 (1349)
Q Consensus 513 llG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La~L~qk~~e---qAEAl~~~a~ 589 (1349)
. .++..+.++.++|.+|..+|++++|+.++++++.+......+.... ....+..+.....+ ..+++.....
T Consensus 255 ~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 255 K---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp H---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH---HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred H---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 0---8856999999999999988998999999999999998838988999---999999987088839999999999986
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99612330399739999999999999889969999999999987421147
Q 000695 590 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 639 (1349)
Q Consensus 590 ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~q 639 (1349)
........+++..+|.+|..+|++++|+.+|++++++..++..
T Consensus 329 -------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 329 -------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf -------7883689999999999999879999999999999999999855
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=183.80 Aligned_cols=276 Identities=13% Similarity=0.088 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999299689999999999999884099981069999999999983299999999999999999995099
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG~ 432 (1349)
.+..++.+|..++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.... .
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 121 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--C
T ss_conf 99999999999998068999999999999999862--6667899999999999988479999999999999999865--3
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 991169999999999999199--------------------799999999999999982599993289999999999999
Q 000695 433 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492 (1349)
Q Consensus 433 Dhpdta~ay~nLA~iy~~lGd--------------------yeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~ 492 (1349)
+....+.++.++|.+|...|+ +++|+.++.+++.+..... +.+..+.++.++|.+|..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH
T ss_conf 210068999999999997397444443100001046678999999999999999998556--747789999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89979999999999999988319994889999999999999648915999999999999999609999999999999999
Q 000695 493 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 572 (1349)
Q Consensus 493 lGdyeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La~ 572 (1349)
+|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .+......+...++.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 275 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_conf 368999999999999999862--7858999999999999988499699999999999998857--676489999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999859999999942699961233039973999999999999988996999999999998742114
Q 000695 573 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 573 L~qk~~eqAEAl~~~a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~ 638 (1349)
+....++..+|......................++..+|.+|..+|++++|+.+|++++++....+
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999837699999999999999985578578999999999999986999999999999999999822
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=183.27 Aligned_cols=276 Identities=16% Similarity=0.134 Sum_probs=226.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9699999999999999929968999999999999988409998-106999999999998329999999999999999999
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 428 (1349)
Q Consensus 350 ~s~~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dh-pe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek 428 (1349)
....+..++.+|..++..|++++|+.+|++++.+. +.+ ...+.++..+|.+|..+|++++|+.++++++.+.+.
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 06899999999999988275999999999998746-----4584689999999999999878999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-------------
Q ss_conf 5099991169999999999999199799999999999999982599993289999999999999899-------------
Q 000695 429 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------- 495 (1349)
Q Consensus 429 ~lG~Dhpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~lGd------------- 495 (1349)
. .+.+....++.++|.+|..+|++++|+.++++++.+..... +++..+.++.++|.+|..+|+
T Consensus 119 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 119 M--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred C--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 1--57367999999999999987899999999999999998710--4488999999999999983761113331001121
Q ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ----7999999999999998831999488999999999999964891599999999999999960999999999999999
Q 000695 496 ----VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 571 (1349)
Q Consensus 496 ----yeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La 571 (1349)
+++|+.++++++.+.... .+.+..+.++.++|.+|..+|++++|+.++++++.+.... .+......++..++
T Consensus 195 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 270 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_conf 0699999999999999999973--8879999999999999998588299999999999999851--99678999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999859999999942699961233039973999999999999988996999999999998742114
Q 000695 572 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 572 ~L~qk~~eqAEAl~~~a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~ 638 (1349)
.++...++..+|......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999876899999999999999987698799999999999999981889999999999999999879
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=177.55 Aligned_cols=276 Identities=15% Similarity=0.101 Sum_probs=204.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC------------------
Q ss_conf 96999999999999999299689999999999999884099981069999999999983299------------------
Q 000695 350 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD------------------ 411 (1349)
Q Consensus 350 ~s~~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGd------------------ 411 (1349)
....+..+..+|..+...|++++|+.++.+++.+.... .+....+.++..+|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67899999999999988479999999999999999865--3210068999999999997397444443100001046678
Q ss_pred --HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf --999999999999999995099991169999999999999199799999999999999982599993289999999999
Q 000695 412 --FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 489 (1349)
Q Consensus 412 --yeeAiel~qKALeI~Ek~lG~Dhpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~al~NLA~i 489 (1349)
+++|+.++++++.+.... .+.+....++.++|.+|..+|++++|+.++++++.+..... +....+.++.++|.+
T Consensus 161 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
T ss_conf 99999999999999999855--67477899999999999983689999999999999998627--858999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99989979999999999999988319994889999999999999648915999999999999999609999999999999
Q 000695 490 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 569 (1349)
Q Consensus 490 y~~lGdyeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~ 569 (1349)
|..+|++++|+.++++++.+.... .+....+.++..+|.+|..+|++++|+.++++++.+.... .+......+...
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~ 312 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWS 312 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_conf 988499699999999999998857--6764899999999999998376999999999999999855--785789999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHC
Q ss_conf 9999998599999999426999612330399739999999999999889969999999-99998742
Q 000695 570 LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK-TYVAKVKG 635 (1349)
Q Consensus 570 La~L~qk~~eqAEAl~~~a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~y-eKALkL~~ 635 (1349)
++.+....++..+|......................++..++.++...|+...+...+ .....+..
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 379 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998699999999999999999982287103689999999999866768777777888999999
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=1.00 E-value=1 Score=176.54 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999299689999999999999884099981069999999999983299999999999999999995099
Q 000695 353 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 432 (1349)
Q Consensus 353 ~Ar~LlelA~~yl~qGdyeEAlellekALel~eqilG~dhpe~A~al~~LA~vy~~lGdyeeAiel~qKALeI~Ek~lG~ 432 (1349)
.+..+..+|..++..|++++|+.++.+++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 117 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 117 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--C
T ss_conf 99999999999999488899999999999986366--5527899999999999998569999999999999999873--6
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 991169999999999999199--------------------799999999999999982599993289999999999999
Q 000695 433 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 492 (1349)
Q Consensus 433 Dhpdta~ay~nLA~iy~~lGd--------------------yeeALellekALel~e~i~G~dhP~~A~al~NLA~iy~~ 492 (1349)
+......++.++|.+|..+|+ +++|+.++++++.+..... +.+..+.++.++|.++..
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
T ss_conf 865789999999999998076411101455421005689999999999999999987469--789999999789999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89979999999999999988319994889999999999999648915999999999999999609999999999999999
Q 000695 493 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 572 (1349)
Q Consensus 493 lGdyeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALeI~kk~LGpdhp~ta~al~~La~ 572 (1349)
+|++++|+.++++++.+.... .+....+.++..+|.+|..+|++++|+.++++++.+.... .+......+...++.
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 271 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_conf 178999999999999999855--9859999999999999998188999999999999999850--356589999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999859999999942699961233039973999999999999988996999999999998742114
Q 000695 573 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 638 (1349)
Q Consensus 573 L~qk~~eqAEAl~~~a~ald~~~a~k~h~svaelL~~LA~iy~aqGdyeEAle~yeKALkL~~kl~ 638 (1349)
+....++..+|......................++..++.+|..+|++++|+.+|++++++..+++
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999865899999999999999872389579999999999999986885899999999999987635
No 10
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=1.00 E-value=1 Score=171.53 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=91.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99998329999999999999999999509999116999999999999919979999999999999998259999328999
Q 000695 403 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 482 (1349)
Q Consensus 403 A~vy~~lGdyeeAiel~qKALeI~Ek~lG~Dhpdta~ay~nLA~iy~~lGdyeeALellekALel~e~i~G~dhP~~A~a 482 (1349)
+..+..+|+|++|+.+++++|.+.++.+|.+||.++.++++||.+|..+|+|++|+.++++++.+++..+|++||.++.+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99988678999999999999999987549978899999999999999834799999999999999998759987899999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999998997999999999999998831999488999999999999964891599999999999
Q 000695 483 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 550 (1349)
Q Consensus 483 l~NLA~iy~~lGdyeeAle~LekALei~ekllG~dhp~tA~al~nLA~iy~~lGdyeEAle~lekALe 550 (1349)
++|||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++.+|+.++..++.|++|...|+++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987899999999999999999980979868999999999999999988889999999999
Done!