Query 000696
Match_columns 1349
No_of_seqs 261 out of 389
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 22:11:14 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 8.2E-55 1.8E-59 496.7 33.8 491 802-1321 11-532 (533)
2 KOG2023 Nuclear transport rece 99.7 7.3E-14 1.6E-18 165.1 32.1 567 645-1324 86-779 (885)
3 KOG2171 Karyopherin (importin) 99.3 1.2E-07 2.5E-12 120.9 50.7 521 730-1323 106-716 (1075)
4 KOG2171 Karyopherin (importin) 99.2 7.2E-06 1.6E-10 105.0 57.6 774 322-1279 120-1001(1075)
5 KOG1824 TATA-binding protein-i 99.1 0.00015 3.3E-09 90.6 68.6 1005 3-1282 10-1139(1233)
6 PRK09687 putative lyase; Provi 99.1 7E-09 1.5E-13 119.1 20.5 226 1008-1317 53-279 (280)
7 PRK09687 putative lyase; Provi 99.0 1.8E-08 3.8E-13 115.8 20.5 52 1254-1320 199-250 (280)
8 KOG2032 Uncharacterized conser 98.9 4.9E-08 1.1E-12 114.3 20.0 473 426-1014 20-522 (533)
9 PRK13800 putative oxidoreducta 98.9 3.5E-08 7.7E-13 130.8 21.1 244 1009-1318 621-865 (897)
10 PRK13800 putative oxidoreducta 98.9 8.8E-08 1.9E-12 127.1 23.3 242 1008-1316 651-895 (897)
11 PTZ00429 beta-adaptin; Provisi 98.7 2.9E-06 6.4E-11 108.6 28.9 317 985-1327 46-405 (746)
12 PLN03200 cellulose synthase-in 98.6 7.2E-05 1.6E-09 103.0 37.4 270 1010-1322 447-725 (2102)
13 PF01602 Adaptin_N: Adaptin N 98.6 7.2E-06 1.6E-10 103.0 24.9 308 984-1323 19-336 (526)
14 KOG1242 Protein containing ada 98.5 5.9E-06 1.3E-10 100.2 21.6 312 1009-1332 134-462 (569)
15 KOG1824 TATA-binding protein-i 98.5 0.013 2.8E-07 74.2 56.8 321 986-1318 627-1034(1233)
16 PLN03200 cellulose synthase-in 98.3 0.00046 1E-08 95.3 35.2 270 1009-1321 488-765 (2102)
17 TIGR02270 conserved hypothetic 98.3 3.4E-05 7.4E-10 93.0 21.5 207 1051-1319 88-295 (410)
18 PF01602 Adaptin_N: Adaptin N 98.3 4.8E-06 1E-10 104.6 14.7 309 995-1328 65-378 (526)
19 KOG0213 Splicing factor 3b, su 98.2 0.009 1.9E-07 73.5 38.0 299 986-1323 696-1027(1172)
20 PF10508 Proteasom_PSMB: Prote 98.2 0.00044 9.5E-09 86.5 27.9 299 1014-1321 43-367 (503)
21 KOG0915 Uncharacterized conser 98.2 0.0038 8.2E-08 82.2 35.4 323 956-1283 941-1313(1702)
22 KOG0211 Protein phosphatase 2A 98.1 0.0023 5E-08 81.9 32.1 294 1014-1319 360-663 (759)
23 KOG1241 Karyopherin (importin) 98.0 0.026 5.7E-07 70.3 36.8 527 747-1317 95-713 (859)
24 KOG0166 Karyopherin (importin) 98.0 0.00019 4.1E-09 87.0 17.6 292 1011-1319 68-392 (514)
25 COG5181 HSH155 U2 snRNP splice 97.9 0.078 1.7E-06 64.5 36.7 293 1004-1315 599-907 (975)
26 KOG1242 Protein containing ada 97.9 0.011 2.5E-07 72.4 30.3 518 653-1314 21-558 (569)
27 PF12348 CLASP_N: CLASP N term 97.7 0.00033 7E-09 78.3 13.9 182 1099-1321 19-207 (228)
28 TIGR02270 conserved hypothetic 97.7 0.0014 3.1E-08 79.3 19.8 123 1048-1203 53-176 (410)
29 PTZ00429 beta-adaptin; Provisi 97.7 0.01 2.2E-07 76.8 28.6 255 1007-1279 138-400 (746)
30 KOG1060 Vesicle coat complex A 97.6 0.021 4.5E-07 71.2 26.1 248 1051-1319 110-457 (968)
31 COG1413 FOG: HEAT repeat [Ener 97.6 0.0013 2.8E-08 78.0 16.0 110 1049-1190 43-153 (335)
32 KOG0166 Karyopherin (importin) 97.5 0.0016 3.4E-08 79.3 15.9 272 1014-1324 157-440 (514)
33 COG1413 FOG: HEAT repeat [Ener 97.5 0.0037 8E-08 74.1 19.0 271 1008-1333 42-317 (335)
34 COG5181 HSH155 U2 snRNP splice 97.5 0.023 4.9E-07 68.9 24.1 353 955-1322 300-761 (975)
35 KOG2023 Nuclear transport rece 97.5 0.074 1.6E-06 65.4 28.5 515 725-1319 153-731 (885)
36 KOG1241 Karyopherin (importin) 97.3 0.49 1.1E-05 59.6 34.0 333 921-1323 164-533 (859)
37 KOG0213 Splicing factor 3b, su 97.3 0.87 1.9E-05 57.0 37.8 341 952-1315 731-1102(1172)
38 PF12348 CLASP_N: CLASP N term 97.3 0.002 4.3E-08 72.0 12.0 183 1025-1214 23-217 (228)
39 PF10508 Proteasom_PSMB: Prote 97.2 0.07 1.5E-06 67.0 25.6 331 984-1321 51-421 (503)
40 PF13646 HEAT_2: HEAT repeats; 97.2 0.00077 1.7E-08 63.2 6.3 86 1052-1154 2-88 (88)
41 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00081 1.8E-08 57.7 5.6 55 1261-1318 1-55 (55)
42 PF13646 HEAT_2: HEAT repeats; 97.0 0.0048 1E-07 57.8 10.3 86 1177-1316 2-88 (88)
43 PF05004 IFRD: Interferon-rela 96.9 0.04 8.6E-07 64.7 18.8 211 1089-1323 45-260 (309)
44 KOG0211 Protein phosphatase 2A 96.9 0.011 2.4E-07 75.9 15.0 249 1025-1317 214-463 (759)
45 PF12717 Cnd1: non-SMC mitotic 96.9 0.02 4.4E-07 61.7 14.8 112 1024-1138 3-114 (178)
46 KOG4224 Armadillo repeat prote 96.7 0.0096 2.1E-07 68.2 11.1 57 1140-1199 345-401 (550)
47 COG5240 SEC21 Vesicle coat com 96.7 2.7 5.8E-05 51.6 35.4 509 743-1319 23-554 (898)
48 COG5096 Vesicle coat complex, 96.6 0.21 4.6E-06 64.0 23.0 288 999-1319 82-385 (757)
49 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0042 9.1E-08 53.2 5.0 52 1063-1114 1-55 (55)
50 PF12719 Cnd3: Nuclear condens 96.5 0.15 3.3E-06 59.6 19.6 132 1046-1182 23-163 (298)
51 KOG0915 Uncharacterized conser 96.5 0.11 2.3E-06 69.4 19.4 326 984-1324 938-1310(1702)
52 PF12717 Cnd1: non-SMC mitotic 96.4 0.067 1.5E-06 57.7 15.1 113 1062-1187 1-114 (178)
53 KOG1062 Vesicle coat complex A 96.4 0.18 3.9E-06 63.7 20.0 297 1002-1325 65-384 (866)
54 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.011 2.4E-07 57.1 7.0 86 1105-1195 4-89 (97)
55 KOG2025 Chromosome condensatio 96.3 0.22 4.7E-06 62.0 19.2 165 1006-1192 41-211 (892)
56 PF12755 Vac14_Fab1_bd: Vacuol 96.1 0.0074 1.6E-07 58.3 4.8 91 1065-1157 2-95 (97)
57 KOG1059 Vesicle coat complex A 96.1 0.68 1.5E-05 58.0 22.3 168 984-1158 120-328 (877)
58 smart00638 LPD_N Lipoprotein N 96.1 0.19 4.1E-06 64.3 18.9 206 961-1197 347-572 (574)
59 cd00020 ARM Armadillo/beta-cat 95.9 0.0087 1.9E-07 58.8 4.7 106 1050-1157 8-119 (120)
60 KOG1240 Protein kinase contain 95.9 0.15 3.2E-06 66.7 15.9 252 1006-1279 459-728 (1431)
61 KOG0567 HEAT repeat-containing 95.8 0.36 7.8E-06 54.1 16.8 189 1089-1319 38-248 (289)
62 KOG0212 Uncharacterized conser 95.8 1.5 3.2E-05 53.8 22.8 244 1047-1325 165-411 (675)
63 PF02985 HEAT: HEAT repeat; I 95.7 0.013 2.9E-07 44.1 3.8 30 1291-1321 1-30 (31)
64 KOG1243 Protein kinase [Genera 95.7 0.077 1.7E-06 66.3 12.1 280 951-1325 234-520 (690)
65 cd00020 ARM Armadillo/beta-cat 95.7 0.036 7.8E-07 54.4 7.9 111 1087-1202 7-119 (120)
66 PF01347 Vitellogenin_N: Lipop 95.7 0.11 2.5E-06 66.9 14.5 166 1007-1198 429-617 (618)
67 KOG1943 Beta-tubulin folding c 95.5 0.39 8.5E-06 62.5 17.9 256 1045-1319 337-610 (1133)
68 KOG1020 Sister chromatid cohes 95.4 18 0.00038 49.7 34.5 474 746-1325 859-1411(1692)
69 PF05804 KAP: Kinesin-associat 95.4 0.51 1.1E-05 60.9 18.4 307 1006-1323 287-652 (708)
70 PF04826 Arm_2: Armadillo-like 95.4 0.11 2.4E-06 59.1 11.3 144 1009-1158 12-163 (254)
71 KOG2259 Uncharacterized conser 95.3 0.29 6.4E-06 60.5 15.1 248 1008-1313 233-509 (823)
72 COG5096 Vesicle coat complex, 95.2 0.41 8.8E-06 61.6 16.7 189 984-1187 32-220 (757)
73 KOG0212 Uncharacterized conser 95.2 11 0.00025 46.5 28.6 372 543-1079 23-407 (675)
74 PF05004 IFRD: Interferon-rela 95.1 1.6 3.4E-05 51.4 20.1 232 1053-1309 47-291 (309)
75 COG5240 SEC21 Vesicle coat com 95.1 3.2 6.9E-05 50.9 22.3 310 984-1319 203-515 (898)
76 KOG1062 Vesicle coat complex A 94.9 17 0.00037 46.8 31.4 227 851-1117 128-380 (866)
77 KOG1059 Vesicle coat complex A 94.8 5.8 0.00013 50.2 24.2 198 841-1116 153-365 (877)
78 KOG2062 26S proteasome regulat 94.8 1.1 2.3E-05 56.4 18.0 260 981-1320 348-653 (929)
79 PF14225 MOR2-PAG1_C: Cell mor 94.8 2.8 6E-05 48.1 20.3 220 1086-1319 6-250 (262)
80 KOG2259 Uncharacterized conser 94.7 0.97 2.1E-05 56.2 17.0 291 1003-1318 111-437 (823)
81 KOG1240 Protein kinase contain 94.7 0.97 2.1E-05 59.6 17.8 240 1026-1324 440-689 (1431)
82 KOG2956 CLIP-associating prote 94.6 0.45 9.8E-06 57.1 13.8 190 983-1180 299-499 (516)
83 KOG1077 Vesicle coat complex A 94.6 2.4 5.2E-05 53.2 19.9 139 1015-1161 80-219 (938)
84 KOG1248 Uncharacterized conser 94.5 26 0.00056 47.1 63.6 202 1081-1319 691-897 (1176)
85 PF12460 MMS19_C: RNAPII trans 94.2 18 0.0004 44.4 27.5 325 852-1200 27-391 (415)
86 KOG1991 Nuclear transport rece 94.1 4.9 0.00011 52.5 22.1 313 986-1313 436-793 (1010)
87 KOG2274 Predicted importin 9 [ 94.0 27 0.00059 45.6 36.5 60 761-821 728-787 (1005)
88 KOG1058 Vesicle coat complex C 94.0 3.4 7.4E-05 52.3 19.9 123 986-1115 35-162 (948)
89 KOG2956 CLIP-associating prote 93.8 2 4.4E-05 51.8 16.7 183 1023-1215 301-490 (516)
90 COG5064 SRP1 Karyopherin (impo 93.8 0.58 1.2E-05 53.8 11.7 296 985-1322 85-445 (526)
91 KOG1820 Microtubule-associated 93.3 0.73 1.6E-05 60.2 13.2 192 1014-1214 258-455 (815)
92 COG5215 KAP95 Karyopherin (imp 92.9 31 0.00067 42.9 38.7 287 1006-1302 363-691 (858)
93 KOG1060 Vesicle coat complex A 92.8 12 0.00026 47.9 21.9 266 1013-1316 39-346 (968)
94 KOG1820 Microtubule-associated 92.7 3.4 7.3E-05 54.3 18.1 185 1094-1321 260-444 (815)
95 KOG4653 Uncharacterized conser 92.7 1.2 2.7E-05 56.9 13.5 169 989-1160 745-920 (982)
96 KOG1517 Guanine nucleotide bin 92.5 0.56 1.2E-05 60.8 10.3 195 1009-1203 512-732 (1387)
97 KOG1967 DNA repair/transcripti 92.0 3.8 8.2E-05 53.1 16.5 213 981-1199 786-1020(1030)
98 PF02985 HEAT: HEAT repeat; I 91.8 0.084 1.8E-06 39.8 1.3 28 1051-1078 2-29 (31)
99 KOG1517 Guanine nucleotide bin 91.6 1.4 3E-05 57.3 12.2 195 1086-1321 475-672 (1387)
100 cd00256 VATPase_H VATPase_H, r 91.4 43 0.00094 41.2 26.7 292 1011-1319 103-424 (429)
101 KOG4535 HEAT and armadillo rep 91.4 17 0.00038 44.1 19.9 209 1083-1319 386-602 (728)
102 PF10363 DUF2435: Protein of u 91.3 0.85 1.8E-05 43.8 7.8 68 1249-1320 5-72 (92)
103 PF01347 Vitellogenin_N: Lipop 90.9 2.7 5.9E-05 54.3 14.7 149 1045-1213 431-601 (618)
104 COG5218 YCG1 Chromosome conden 90.8 2.9 6.2E-05 51.5 13.1 190 1005-1200 45-263 (885)
105 smart00638 LPD_N Lipoprotein N 90.7 4.3 9.4E-05 52.0 16.1 143 1045-1207 393-549 (574)
106 KOG1949 Uncharacterized conser 90.3 6.1 0.00013 49.8 15.5 142 1014-1158 179-331 (1005)
107 KOG1061 Vesicle coat complex A 90.2 4.8 0.0001 51.5 15.0 163 985-1158 27-189 (734)
108 PF04826 Arm_2: Armadillo-like 90.1 6.9 0.00015 44.8 15.1 141 1009-1158 54-205 (254)
109 KOG4653 Uncharacterized conser 89.8 11 0.00024 48.7 17.6 223 1055-1321 733-965 (982)
110 KOG0567 HEAT repeat-containing 88.9 1.7 3.7E-05 49.0 8.7 49 1139-1201 230-278 (289)
111 KOG0414 Chromosome condensatio 88.9 12 0.00026 50.1 17.4 139 1135-1307 318-460 (1251)
112 KOG1061 Vesicle coat complex A 88.8 15 0.00033 47.1 17.8 292 1004-1322 116-492 (734)
113 PF12830 Nipped-B_C: Sister ch 88.4 1.7 3.6E-05 47.4 8.4 76 1243-1325 4-80 (187)
114 KOG0803 Predicted E3 ubiquitin 88.4 9.5 0.00021 52.5 16.8 219 1089-1323 43-266 (1312)
115 PF10363 DUF2435: Protein of u 88.3 1.7 3.6E-05 41.8 7.2 85 1010-1098 4-88 (92)
116 KOG0414 Chromosome condensatio 88.3 5.4 0.00012 53.0 13.8 187 984-1188 893-1085(1251)
117 KOG4224 Armadillo repeat prote 88.1 2.8 6.1E-05 48.8 10.0 127 1061-1201 179-319 (550)
118 PF05918 API5: Apoptosis inhib 87.8 77 0.0017 40.3 23.0 127 1021-1159 34-164 (556)
119 KOG1943 Beta-tubulin folding c 87.8 1.2E+02 0.0025 41.0 34.4 479 741-1321 340-882 (1133)
120 PF13251 DUF4042: Domain of un 87.5 11 0.00024 40.9 13.7 161 1144-1319 1-173 (182)
121 PF12719 Cnd3: Nuclear condens 87.3 32 0.00069 40.3 18.7 136 1006-1147 23-174 (298)
122 PF11864 DUF3384: Domain of un 87.2 71 0.0015 40.0 22.7 296 989-1328 8-343 (464)
123 KOG2025 Chromosome condensatio 87.1 12 0.00027 47.4 15.2 194 1006-1207 82-299 (892)
124 KOG1967 DNA repair/transcripti 86.8 2.1 4.5E-05 55.3 8.8 129 984-1112 883-1020(1030)
125 PF08064 UME: UME (NUC010) dom 86.6 1.1 2.4E-05 44.3 5.1 87 1051-1139 13-106 (107)
126 smart00802 UME Domain in UVSB 86.4 1.3 2.7E-05 43.8 5.4 88 1050-1139 12-106 (107)
127 KOG1525 Sister chromatid cohes 86.2 1.6E+02 0.0036 41.0 33.5 216 465-772 180-406 (1266)
128 KOG1058 Vesicle coat complex C 85.9 41 0.00088 43.3 18.8 267 1006-1279 96-428 (948)
129 PF14500 MMS19_N: Dos2-interac 85.4 8.4 0.00018 44.3 12.2 196 1012-1215 2-216 (262)
130 PF08064 UME: UME (NUC010) dom 85.2 2.9 6.2E-05 41.3 7.2 77 1101-1180 29-105 (107)
131 PF08167 RIX1: rRNA processing 84.9 4.3 9.3E-05 43.3 9.0 119 1005-1129 21-155 (165)
132 KOG1293 Proteins containing ar 84.9 5.4 0.00012 50.1 10.8 141 1143-1319 391-532 (678)
133 COG5116 RPN2 26S proteasome re 84.3 11 0.00025 46.4 12.8 130 1136-1324 523-654 (926)
134 KOG1078 Vesicle coat complex C 84.3 1.5E+02 0.0032 38.8 35.5 213 1028-1258 227-440 (865)
135 PF14500 MMS19_N: Dos2-interac 83.7 71 0.0015 36.8 18.7 233 1053-1296 3-256 (262)
136 KOG1243 Protein kinase [Genera 83.2 2.3 4.9E-05 53.7 6.8 192 1006-1207 327-519 (690)
137 PF14868 DUF4487: Domain of un 83.1 97 0.0021 39.6 20.9 261 1052-1324 269-556 (559)
138 COG5231 VMA13 Vacuolar H+-ATPa 82.5 24 0.00052 41.0 13.7 73 1248-1322 357-430 (432)
139 KOG1525 Sister chromatid cohes 81.9 1.1E+02 0.0025 42.5 22.1 291 955-1319 21-328 (1266)
140 KOG2973 Uncharacterized conser 81.1 28 0.00062 40.4 13.7 61 1053-1115 7-70 (353)
141 COG5116 RPN2 26S proteasome re 78.1 10 0.00022 46.8 9.5 161 1096-1316 525-689 (926)
142 COG5098 Chromosome condensatio 76.6 15 0.00033 46.3 10.6 129 991-1119 281-418 (1128)
143 PF12460 MMS19_C: RNAPII trans 76.0 2E+02 0.0044 35.3 30.6 133 984-1118 246-396 (415)
144 PF03224 V-ATPase_H_N: V-ATPas 76.0 63 0.0014 38.1 15.6 161 1088-1262 106-274 (312)
145 KOG0946 ER-Golgi vesicle-tethe 74.8 2.8E+02 0.0061 36.4 24.5 108 742-875 122-243 (970)
146 KOG2160 Armadillo/beta-catenin 74.3 54 0.0012 38.9 14.0 137 1020-1158 94-240 (342)
147 COG5218 YCG1 Chromosome conden 74.0 11 0.00023 46.8 8.3 87 1228-1320 69-161 (885)
148 KOG2062 26S proteasome regulat 72.7 4.2 9E-05 51.5 4.7 63 1247-1319 554-617 (929)
149 PF08506 Cse1: Cse1; InterPro 72.7 79 0.0017 38.4 15.4 52 1258-1315 319-370 (370)
150 KOG1077 Vesicle coat complex A 72.7 3E+02 0.0064 35.7 24.2 258 1025-1328 164-442 (938)
151 KOG2022 Nuclear transport rece 72.6 3.3E+02 0.0072 36.2 21.4 341 982-1329 481-928 (982)
152 PF12074 DUF3554: Domain of un 71.8 45 0.00098 39.8 13.2 186 1006-1202 19-234 (339)
153 KOG2137 Protein kinase [Signal 71.5 28 0.00062 44.6 11.5 178 1007-1195 347-529 (700)
154 PF13251 DUF4042: Domain of un 71.4 9.4 0.0002 41.4 6.5 70 1090-1159 104-175 (182)
155 PF10274 ParcG: Parkin co-regu 71.3 23 0.0005 38.4 9.3 73 1086-1158 37-109 (183)
156 PF04118 Dopey_N: Dopey, N-ter 70.8 46 0.001 39.2 12.5 168 1103-1314 71-248 (307)
157 KOG2973 Uncharacterized conser 70.2 8.9 0.00019 44.3 6.2 65 1249-1319 5-70 (353)
158 KOG0946 ER-Golgi vesicle-tethe 69.8 3.6E+02 0.0078 35.5 29.8 76 782-876 20-95 (970)
159 smart00802 UME Domain in UVSB 69.2 15 0.00033 36.3 6.9 89 1088-1179 12-104 (107)
160 PF00514 Arm: Armadillo/beta-c 69.0 6.1 0.00013 31.6 3.4 29 1290-1319 12-40 (41)
161 PF14664 RICTOR_N: Rapamycin-i 68.6 1.4E+02 0.0031 36.2 16.4 144 1049-1200 25-173 (371)
162 COG5064 SRP1 Karyopherin (impo 68.6 27 0.00059 40.7 9.6 212 1066-1317 132-353 (526)
163 PF08569 Mo25: Mo25-like; Int 66.4 1.9E+02 0.0041 34.6 16.6 174 1139-1319 86-282 (335)
164 PF08167 RIX1: rRNA processing 66.4 24 0.00052 37.6 8.4 83 1242-1325 20-102 (165)
165 KOG4535 HEAT and armadillo rep 66.3 12 0.00026 45.3 6.5 119 1053-1171 395-526 (728)
166 KOG2160 Armadillo/beta-catenin 66.2 13 0.00028 43.9 6.7 68 1251-1319 128-195 (342)
167 PF05804 KAP: Kinesin-associat 64.1 20 0.00042 46.9 8.4 118 1062-1187 263-385 (708)
168 KOG1949 Uncharacterized conser 63.7 18 0.00038 45.9 7.3 106 1007-1115 218-330 (1005)
169 PF13001 Ecm29: Proteasome sta 63.5 65 0.0014 40.7 12.8 132 1112-1279 349-491 (501)
170 KOG2122 Beta-catenin-binding p 63.4 1.7E+02 0.0037 40.8 16.2 212 900-1118 313-603 (2195)
171 KOG0392 SNF2 family DNA-depend 60.1 41 0.00089 45.6 10.0 111 1049-1159 816-926 (1549)
172 PF11698 V-ATPase_H_C: V-ATPas 59.8 20 0.00043 36.2 5.7 79 1240-1320 36-115 (119)
173 KOG3678 SARM protein (with ste 59.2 2.1E+02 0.0047 35.0 14.8 207 1102-1320 197-452 (832)
174 KOG2933 Uncharacterized conser 58.8 41 0.00088 39.2 8.7 179 980-1207 97-281 (334)
175 PF10274 ParcG: Parkin co-regu 57.0 34 0.00073 37.1 7.3 91 1048-1138 37-133 (183)
176 cd06561 AlkD_like A new struct 56.9 40 0.00088 36.5 8.3 84 1229-1321 88-171 (197)
177 KOG2149 Uncharacterized conser 54.2 53 0.0012 39.6 9.0 110 1051-1160 60-172 (393)
178 PF10521 DUF2454: Protein of u 53.6 2.3E+02 0.0049 33.0 14.1 162 1117-1305 107-279 (282)
179 PLN03076 ARF guanine nucleotid 53.3 3.3E+02 0.0073 39.7 17.8 161 1024-1184 1198-1403(1780)
180 PF12765 Cohesin_HEAT: HEAT re 52.7 16 0.00034 29.8 3.1 27 1287-1314 15-41 (42)
181 PF13001 Ecm29: Proteasome sta 51.4 2.8E+02 0.006 35.2 15.4 146 1174-1325 237-408 (501)
182 PF03130 HEAT_PBS: PBS lyase H 51.2 11 0.00023 27.5 1.8 27 1065-1098 1-27 (27)
183 COG5098 Chromosome condensatio 49.9 52 0.0011 41.9 8.1 105 1051-1158 301-415 (1128)
184 PLN03076 ARF guanine nucleotid 48.8 1E+03 0.022 35.1 21.3 323 430-791 1149-1509(1780)
185 KOG0413 Uncharacterized conser 48.7 55 0.0012 43.2 8.3 128 1044-1188 963-1096(1529)
186 KOG1078 Vesicle coat complex C 48.4 7.9E+02 0.017 32.5 21.1 148 984-1158 13-164 (865)
187 PF00514 Arm: Armadillo/beta-c 48.2 25 0.00054 28.0 3.6 29 1174-1202 12-40 (41)
188 KOG1020 Sister chromatid cohes 45.9 3.9E+02 0.0085 37.7 15.6 165 984-1157 789-959 (1692)
189 cd03572 ENTH_epsin_related ENT 45.4 1.4E+02 0.003 30.4 9.1 91 1230-1322 22-121 (122)
190 PF12765 Cohesin_HEAT: HEAT re 45.3 24 0.00053 28.7 3.1 25 1048-1072 17-41 (42)
191 PF14664 RICTOR_N: Rapamycin-i 43.9 4.2E+02 0.0091 32.3 14.7 34 1291-1325 335-369 (371)
192 COG5234 CIN1 Beta-tubulin fold 43.8 1.9E+02 0.0041 37.3 11.5 120 1080-1201 239-414 (993)
193 PF08713 DNA_alkylation: DNA a 42.7 3E+02 0.0065 30.0 12.5 161 1135-1321 25-185 (213)
194 cd00197 VHS_ENTH_ANTH VHS, ENT 42.3 40 0.00086 33.5 4.8 66 2-67 41-114 (115)
195 KOG2933 Uncharacterized conser 42.1 95 0.0021 36.3 8.2 31 1089-1119 207-237 (334)
196 PF12830 Nipped-B_C: Sister ch 41.0 3.8E+02 0.0082 29.2 12.6 117 1135-1260 14-143 (187)
197 PF11865 DUF3385: Domain of un 40.8 1.3E+02 0.0028 32.0 8.6 30 1045-1077 10-39 (160)
198 COG5110 RPN1 26S proteasome re 40.0 8.9E+02 0.019 30.7 17.5 227 1049-1319 450-704 (881)
199 KOG4413 26S proteasome regulat 39.1 7.3E+02 0.016 29.5 20.9 266 1006-1279 34-336 (524)
200 KOG2137 Protein kinase [Signal 38.3 1.5E+02 0.0033 38.4 9.9 111 1082-1201 384-494 (700)
201 PF10521 DUF2454: Protein of u 38.1 1.9E+02 0.004 33.7 10.2 131 1075-1205 107-255 (282)
202 KOG2022 Nuclear transport rece 37.0 1.2E+03 0.026 31.4 31.0 397 295-787 457-882 (982)
203 PF11935 DUF3453: Domain of un 35.9 5.5E+02 0.012 29.1 13.3 115 1058-1202 2-144 (239)
204 COG5234 CIN1 Beta-tubulin fold 35.4 8.9E+02 0.019 31.7 15.4 78 1255-1344 699-783 (993)
205 PF14222 MOR2-PAG1_N: Cell mor 35.4 1.1E+03 0.024 30.4 19.0 58 1145-1205 444-502 (552)
206 KOG0392 SNF2 family DNA-depend 35.1 3E+02 0.0065 38.1 12.0 162 1045-1206 204-388 (1549)
207 PF05536 Neurochondrin: Neuroc 35.1 1.1E+03 0.024 30.3 26.1 201 1050-1261 141-367 (543)
208 KOG4524 Uncharacterized conser 34.7 1.3E+02 0.0028 40.1 8.6 136 1166-1311 581-759 (1014)
209 KOG4500 Rho/Rac GTPase guanine 34.3 2.4E+02 0.0052 34.5 10.0 109 1010-1118 316-433 (604)
210 PRK14707 hypothetical protein; 34.3 1.9E+03 0.041 32.9 28.1 334 925-1316 789-1155(2710)
211 PF11698 V-ATPase_H_C: V-ATPas 34.3 54 0.0012 33.1 4.2 28 1089-1116 88-115 (119)
212 COG5101 CRM1 Importin beta-rel 34.0 8.3E+02 0.018 31.5 14.7 152 268-452 487-653 (1053)
213 smart00567 EZ_HEAT E-Z type HE 32.9 40 0.00086 24.9 2.4 28 1064-1098 2-29 (30)
214 KOG2005 26S proteasome regulat 32.9 6.6E+02 0.014 32.6 13.8 277 1004-1319 410-703 (878)
215 KOG2122 Beta-catenin-binding p 32.3 7.3E+02 0.016 35.3 14.7 32 645-676 481-512 (2195)
216 smart00288 VHS Domain present 32.2 2.9E+02 0.0062 28.4 9.4 88 1230-1319 21-110 (133)
217 KOG1822 Uncharacterized conser 31.5 9.9E+02 0.021 34.9 16.3 221 953-1176 849-1107(2067)
218 PF12530 DUF3730: Protein of u 31.5 8E+02 0.017 27.7 16.8 153 986-1142 53-216 (234)
219 cd03561 VHS VHS domain family; 31.2 4.1E+02 0.0089 27.1 10.3 89 1229-1319 20-111 (133)
220 PF00790 VHS: VHS domain; Int 30.9 3.2E+02 0.0069 28.2 9.5 92 1225-1319 22-117 (140)
221 PF08569 Mo25: Mo25-like; Int 30.6 6.6E+02 0.014 30.1 13.2 200 981-1194 54-274 (335)
222 PF05536 Neurochondrin: Neuroc 30.5 1.3E+03 0.028 29.7 16.8 140 1009-1159 5-169 (543)
223 cd03572 ENTH_epsin_related ENT 29.7 92 0.002 31.7 5.0 66 1-66 41-117 (122)
224 KOG1293 Proteins containing ar 29.2 7.5E+02 0.016 32.1 13.6 134 1092-1252 424-557 (678)
225 COG5656 SXM1 Importin, protein 28.2 1.5E+03 0.033 29.9 22.2 295 1009-1311 460-792 (970)
226 smart00185 ARM Armadillo/beta- 27.9 76 0.0016 24.5 3.4 28 1291-1319 13-40 (41)
227 PF12074 DUF3554: Domain of un 27.2 9E+02 0.02 28.7 13.9 86 1066-1158 4-90 (339)
228 cd03568 VHS_STAM VHS domain fa 27.2 4.2E+02 0.009 27.7 9.6 87 1229-1317 20-107 (144)
229 COG5209 RCD1 Uncharacterized p 26.8 4E+02 0.0086 30.0 9.4 147 1097-1265 110-274 (315)
230 KOG0413 Uncharacterized conser 26.8 5.5E+02 0.012 34.7 12.0 159 1140-1319 483-644 (1529)
231 KOG2759 Vacuolar H+-ATPase V1 26.6 2.2E+02 0.0048 34.7 8.2 83 981-1071 342-431 (442)
232 KOG2759 Vacuolar H+-ATPase V1 26.4 1.3E+03 0.028 28.5 20.2 88 1227-1320 350-438 (442)
233 KOG2274 Predicted importin 9 [ 26.4 1.8E+03 0.038 30.0 41.9 273 1029-1309 470-769 (1005)
234 cd03561 VHS VHS domain family; 26.2 1.4E+02 0.003 30.6 5.8 65 3-68 42-112 (133)
235 PF14961 BROMI: Broad-minded p 26.1 3E+02 0.0065 38.0 9.9 197 1052-1260 164-385 (1296)
236 PF08713 DNA_alkylation: DNA a 26.1 5.9E+02 0.013 27.7 11.3 65 1050-1117 121-185 (213)
237 cd03568 VHS_STAM VHS domain fa 26.0 1.2E+02 0.0027 31.6 5.5 65 3-68 42-110 (144)
238 PRK09169 hypothetical protein; 25.6 2.6E+03 0.056 31.7 38.1 238 951-1207 515-782 (2316)
239 PF12530 DUF3730: Protein of u 25.6 1E+03 0.022 26.9 18.5 193 984-1185 14-217 (234)
240 KOG1993 Nuclear transport rece 25.1 3.3E+02 0.0072 35.8 9.6 56 1260-1320 500-556 (978)
241 PF14750 INTS2: Integrator com 25.0 2E+03 0.044 30.3 18.5 121 1142-1273 325-464 (1049)
242 cd03569 VHS_Hrs_Vps27p VHS dom 24.4 1.5E+02 0.0033 30.8 5.8 65 3-68 46-114 (142)
243 KOG0168 Putative ubiquitin fus 24.3 5.4E+02 0.012 34.3 11.3 190 1089-1318 169-362 (1051)
244 PF11864 DUF3384: Domain of un 24.0 1.5E+03 0.032 28.3 26.5 130 759-915 151-287 (464)
245 PRK14707 hypothetical protein; 23.4 2.8E+03 0.06 31.3 28.7 336 952-1337 894-1263(2710)
246 PF12726 SEN1_N: SEN1 N termin 23.3 1.9E+03 0.04 29.2 34.9 303 951-1310 229-576 (727)
247 KOG0168 Putative ubiquitin fus 22.9 6.3E+02 0.014 33.7 11.5 189 1017-1215 175-379 (1051)
248 KOG4199 Uncharacterized conser 22.9 1.4E+03 0.03 27.6 21.3 155 1137-1329 291-454 (461)
249 PF10304 DUF2411: Domain of un 22.7 1.6E+02 0.0034 23.4 4.1 31 1289-1319 4-34 (36)
250 PF07539 DRIM: Down-regulated 22.7 1.1E+02 0.0023 32.0 4.2 40 1048-1087 16-55 (141)
251 PF12231 Rif1_N: Rap1-interact 22.7 9.4E+02 0.02 29.1 13.0 182 997-1205 167-351 (372)
252 KOG2090 Metalloendopeptidase f 22.7 1.9E+02 0.0042 36.6 6.9 79 656-746 104-186 (704)
253 KOG1248 Uncharacterized conser 22.1 2.3E+03 0.05 29.9 54.3 596 657-1319 146-855 (1176)
254 PF08767 CRM1_C: CRM1 C termin 21.5 4.7E+02 0.01 31.1 9.8 72 1045-1116 161-244 (319)
255 KOG2149 Uncharacterized conser 21.0 2.2E+02 0.0047 34.6 6.8 68 1090-1158 61-128 (393)
256 KOG4500 Rho/Rac GTPase guanine 20.8 1.7E+03 0.036 27.7 18.2 73 1130-1203 316-390 (604)
257 PF04003 Utp12: Dip2/Utp12 Fam 20.1 2.9E+02 0.0063 26.9 6.6 52 727-778 17-68 (110)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.2e-55 Score=496.68 Aligned_cols=491 Identities=20% Similarity=0.201 Sum_probs=446.7
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCC
Q 000696 802 RLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPF 877 (1349)
Q Consensus 802 r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~----~W~al~~d~~l~~~vL~~LL~~L~~~p~ 877 (1349)
-+....++.++...|.-.++ .+. +.+++|.+. .|..+.-.+....+++.+++..+.. .
T Consensus 11 lqa~qdsv~l~h~~h~~a~~-~~~---------------~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~-~- 72 (533)
T KOG2032|consen 11 LEARQDSVVLLHVRHQTAKQ-AVI---------------TAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR-E- 72 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHH---------------HcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-h-
Confidence 34455566677776655444 333 578899887 7999999999999999999988766 1
Q ss_pred ccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCC---------
Q 000696 878 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG--------- 948 (1349)
Q Consensus 878 ~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~--------- 948 (1349)
..++++..+...+++..++-||++++|...+. +.+..|-..|||||.-+|+..+++.|+..+.
T Consensus 73 ------~~a~sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r~~ 144 (533)
T KOG2032|consen 73 ------GFAESLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSRLE 144 (533)
T ss_pred ------hhhhhhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHHHH
Confidence 12233444555678889999999999999998 8889999999999999999999999986552
Q ss_pred --------CCChHHHHHHHHHHHHHhhcchHHHHHHHhcCC-CC---ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhh
Q 000696 949 --------QHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTK 1016 (1349)
Q Consensus 949 --------~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~-W~---~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~ 1016 (1349)
.+.||+.+..+++.+...++.+.+.+..+..++ |. ++..|..|++.++|.|..+.++.++.|+.++..
T Consensus 145 ~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~s 224 (533)
T KOG2032|consen 145 DVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLS 224 (533)
T ss_pred hHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhccc
Confidence 678999999999999999999999999998876 98 899999999999999999999999999999999
Q ss_pred hhcccCccchHHHHHHHHHhhhcCCC-hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHH
Q 000696 1017 SINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVI 1092 (1349)
Q Consensus 1017 ~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~al 1092 (1349)
...|..+.+|++.+|||+|+.+.+.. ...++++++..|.+..+|||..+|.+|+|||||++.+ |++.|.+++++++
T Consensus 225 s~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldai 304 (533)
T KOG2032|consen 225 SITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAI 304 (533)
T ss_pred ccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHH
Confidence 99999999999999999999998755 4577888999999999999999999999999999754 9999999999999
Q ss_pred HhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000696 1093 LALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1171 (1349)
Q Consensus 1093 l~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1171 (1349)
+.||+|.+ ++|++|||.+|.++++.....++++++++|+.|+|+||++|++++|.+||.+||+|+++++|.+++.|.||
T Consensus 305 i~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~ 384 (533)
T KOG2032|consen 305 IRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQ 384 (533)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHH
Confidence 99999965 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHH
Q 000696 1172 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG 1250 (1349)
Q Consensus 1172 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~ 1250 (1349)
|.+.+.||++|++|++|.|+.|||.+++.|.+.+.. .+..+|+++. |+....+.+|++..|+.|...+||....++.
T Consensus 385 v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t 462 (533)
T KOG2032|consen 385 VKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESL--DTDMARFQAFYNQWCIQLNHIHPDILMLLLT 462 (533)
T ss_pred HHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999999874 4444589999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1251 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1251 ~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
.+..||+|.|+.+|.+|+.+.|...-++.++.+...|.+++..+|.. |.+||.|.|+..|.+|++.+.+.
T Consensus 463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~-l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLST-LWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH-HccCCCchhHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999999999999999999999 89999999999999999998753
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.3e-14 Score=165.07 Aligned_cols=567 Identities=16% Similarity=0.163 Sum_probs=372.4
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCC--------CCCcc-hhhhhhhhhh-cHHHHHHhcc
Q 000696 645 LCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGS--------SSGID-LELSYGALSS-LEDVIAILRS 714 (1349)
Q Consensus 645 ~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~--------~~~~~-~~~~~~~l~~-l~d~~~~l~~ 714 (1349)
..+|+.-....+.-+|+++-||-...-.|..+...-.++.||++. +.+++ -|++.++|++ ++|..+.+++
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 578899999999999999999999998888887776555565422 33433 4667788888 7888888888
Q ss_pred CCCCChhHHHH-H---------------HHHHHHccCC------hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000696 715 DASIDPSEVFN-R---------------IVSSVCILLT------KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 772 (1349)
Q Consensus 715 ~~~~~~~~~~~-~---------------i~~~i~~~L~------~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 772 (1349)
+....|-+++- + -...+.+++. ...+..|+.+++.--+|.++.+.+..|..+..+++.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 88777765541 1 1122334443 345778999999999999999999999999999999
Q ss_pred hcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHH
Q 000696 773 RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFH 852 (1349)
Q Consensus 773 rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~ 852 (1349)
|..++ +|.+-+.+.+-+...+.+. ++|- +..+++|.
T Consensus 246 r~dkl----~phl~~IveyML~~tqd~d-----------------E~VA-----------------------LEACEFwl 281 (885)
T KOG2023|consen 246 RPDKL----VPHLDNIVEYMLQRTQDVD-----------------ENVA-----------------------LEACEFWL 281 (885)
T ss_pred cHHhc----ccchHHHHHHHHHHccCcc-----------------hhHH-----------------------HHHHHHHH
Confidence 99999 6665555544333333322 3321 45668999
Q ss_pred HhhcCc---ccHHHHHHHHHHHHccCCCccCCCc---cCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHh
Q 000696 853 AFSQHA---VLSFLFLEHLISALNQTPFVKGDME---KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKS 926 (1349)
Q Consensus 853 al~~d~---~l~~~vL~~LL~~L~~~p~~~e~~~---~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~ 926 (1349)
++|..| ....+.|+.|..+|-+.+.|.|++. +.+..+...+|+..+ ++.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeD------------------------IkPR 337 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREED------------------------IKPR 337 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhh------------------------ccch
Confidence 999876 4556677888999999999998642 122233334444433 4445
Q ss_pred hHHHHHHHHHHhhhcccCCCC-------------C------CCChHH-HHHHHHHHHHHhhcchHHHHHHHh---cCCCC
Q 000696 927 YAPVLAALTLQLGSCHGLASS-------------G------QHEPLR-AILTSFQAFCECVGDLEMRKILAR---DGEQN 983 (1349)
Q Consensus 927 fp~Lf~aLL~ql~~~~~~~~~-------------~------~~~P~~-~aleAlk~ll~~~g~~~~~~~L~~---~g~W~ 983 (1349)
|.. +-.+|.... + +++.|| .+++.|-.++.---....+-.++. ...|.
T Consensus 338 fhk---------sk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 338 FHK---------SKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred hhh---------chhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 554 334443210 0 567787 578888766643333333444443 25799
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhc--CCChhcHHHHHHHHHHhhcCCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSDE 1061 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~~~l~~~~i~~L~~~l~D~ 1061 (1349)
-.|.-.-+++.+|.++.++.-|++|.++-++++.|++.....|.++++.++++-+. +......++.++..|.+++-|.
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999998764 2224467788999999999999
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCCh---hHHHHHHHHHHHHh-ccCCcCC-cc---------
Q 000696 1062 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDE---SVQLTAVSCLLTIL-KSSSKDA-VE--------- 1124 (1349)
Q Consensus 1062 ~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~---~V~leAm~~L~~lL-~~l~~~~-~~--------- 1124 (1349)
|..|+..|.-+++.+-.. +.-.|...+|..++-++..+.. .|.+.|+.+|++=. +.+.+.. +.
T Consensus 489 NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~K 568 (885)
T KOG2023|consen 489 NKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEK 568 (885)
T ss_pred cHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHH
Confidence 999999999999977543 6667888899999988877543 38899999988754 2333222 11
Q ss_pred ------------h---hHHhHHhhhcCcCCCCChHHHHHHHHHHHH----hhcc--------------------------
Q 000696 1125 ------------P---ILLNLSVRLRNLQVSMNVKMRRNAFAAFGA----LSNF-------------------------- 1159 (1349)
Q Consensus 1125 ------------~---~l~~i~~~lrpffede~~~vR~aAi~LfG~----L~~~-------------------------- 1159 (1349)
| .+-.|+..++.=|--..+.|=.-+|++..+ +.+.
T Consensus 569 W~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLae 648 (885)
T KOG2023|consen 569 WELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAE 648 (885)
T ss_pred HHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHH
Confidence 1 122344444444444445555555555442 1111
Q ss_pred CCCcchHHHHHHHHhhhhH-HHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHH
Q 000696 1160 GVGSQREAFLEQIHAMLPR-LILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1238 (1349)
Q Consensus 1160 ~~~~~~~~~~eQv~~~Lvp-LLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~ 1238 (1349)
|-|+..+++.-| +++.- ++..++|+-|+||+.|=.-|+..+.. -|.. ... +..++...|.
T Consensus 649 gLg~~ie~Lva~--snl~~lll~C~~D~~peVRQS~FALLGDltk~-------c~~~--v~p--------~~~~fl~~lg 709 (885)
T KOG2023|consen 649 GLGSHIEPLVAQ--SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA-------CFEH--VIP--------NLADFLPILG 709 (885)
T ss_pred HhhhchHHHhhh--ccHHHHHHHHhccCChHHHHHHHHHHHHHHHH-------HHHh--ccc--------hHHHHHHHHh
Confidence 111222222222 23333 45678999999999884433333221 1111 000 1122223232
Q ss_pred HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHh-ccCCChhHHHHHHHHHHH
Q 000696 1239 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKL-SQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1239 ~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~L-l~Dpdp~VR~~Aa~aL~~ 1317 (1349)
.-+....-.+--||+|-+|-+.-.+..+.. .+..-++..|...+ .+--...|-...|.|+|+
T Consensus 710 ---------------~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIGr 772 (885)
T KOG2023|consen 710 ---------------ANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIGR 772 (885)
T ss_pred ---------------hcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhh
Confidence 234444556778899999988665553322 23344555555411 234556788899999999
Q ss_pred HHHhccc
Q 000696 1318 LLKSINS 1324 (1349)
Q Consensus 1318 l~k~~~~ 1324 (1349)
|+-++--
T Consensus 773 Lg~~~Pe 779 (885)
T KOG2023|consen 773 LGYICPE 779 (885)
T ss_pred hhccCHH
Confidence 9955543
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.2e-07 Score=120.86 Aligned_cols=521 Identities=17% Similarity=0.170 Sum_probs=329.6
Q ss_pred HHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHH
Q 000696 730 SVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAI 809 (1349)
Q Consensus 730 ~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai 809 (1349)
.+++.+-+++-.+++.-++++..+++.+-...|-.+|..+.+..|..+..= .+++....-+-|.....+ +|....+|+
T Consensus 106 eia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~rA~ 183 (1075)
T KOG2171|consen 106 EIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAVRAL 183 (1075)
T ss_pred HHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhccCCcch-HHHHHHHHH
Confidence 345555555888999999999999999999999999999999999998432 667777777778777777 999999999
Q ss_pred HHHhhccC-chhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCC
Q 000696 810 SCLAENTN-SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYS 888 (1349)
Q Consensus 810 ~~La~~h~-~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~ 888 (1349)
...+..+. ++.. |+. .+.++..++..++..-...++
T Consensus 184 ~a~~~~~~~~~~~-----------------------------~~~-------~~~llP~~l~vl~~~i~~~d~------- 220 (1075)
T KOG2171|consen 184 GAFAEYLENNKSE-----------------------------VDK-------FRDLLPSLLNVLQEVIQDGDD------- 220 (1075)
T ss_pred HHHHHHhccchHH-----------------------------HHH-------HHHHhHHHHHHhHhhhhccch-------
Confidence 98888774 2211 222 233444444444433322211
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHh-
Q 000696 889 SHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCEC- 966 (1349)
Q Consensus 889 ~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~- 966 (1349)
.....+..+|-|++... -+-...++-+++ .+.+++....++. ++.| .|++-+-.+.+.
T Consensus 221 ----------~~a~~~l~~l~El~e~~----pk~l~~~l~~ii-~~~l~Ia~n~~l~-----~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 221 ----------DAAKSALEALIELLESE----PKLLRPHLSQII-QFSLEIAKNKELE-----NSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred ----------HHHHHHHHHHHHHHhhc----hHHHHHHHHHHH-HHHHHHhhccccc-----HHHHHHHHHHHHHHHHhh
Confidence 11334566666666543 122333333322 2333333222221 1223 344433333222
Q ss_pred ---------hcchHHHHH------HHhcCCCC---------ChhhHHHHHHHHHHHhhhcCch-hHHHHHHHHhhhhccc
Q 000696 967 ---------VGDLEMRKI------LARDGEQN---------DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQ 1021 (1349)
Q Consensus 967 ---------~g~~~~~~~------L~~~g~W~---------~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s~ 1021 (1349)
-|..=+... ++.+..|. ....+.-|++.|.|.-++-.|. -++.++.++-.+++|+
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~ 360 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST 360 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence 111111111 12234675 2346788888888854443433 5889999999999999
Q ss_pred CccchHHHHHHHHHhhhcCCC-hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hh-hhhHHHHHHHHHhhc
Q 000696 1022 QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI-HQYATQVLSVILALL 1096 (1349)
Q Consensus 1022 ~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v-~~~~~~lL~all~~L 1096 (1349)
+-.+|-+|.-.++-..--|.. -...++.++....++++||+|.||..|+.++|.++.+ .+ ++|-..++++++..+
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh
Confidence 999999998888876654422 2234678999999999999999999999999999865 34 445567777999999
Q ss_pred cCCCh-hHHHHHHHHHHHHhccCCcCCcchhHHhHHh-hhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 000696 1097 DDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSV-RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1174 (1349)
Q Consensus 1097 ~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~-~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1174 (1349)
++... +|..-|..+|-+.....++..+++++-.+-. ++.-+-++....||..+....|.++-.+. ..|..-. .
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~----~~F~pY~-d 515 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ----EKFIPYF-D 515 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----hhhHhHH-H
Confidence 98764 7999999999999999999999999999988 77788889999999999999999986332 3333332 3
Q ss_pred hhhHHHHh-ccC----CChhHHHHHHHHHHhhhhhhhh-hhh----hhhccc------cCCC-CCCCCh-HHHHHHHHHH
Q 000696 1175 MLPRLILH-IYD----DDLSVRQACRNTLKQVAPFMEI-GVY----GIFNSH------CFNS-DHRSDY-ETFVRDLTRQ 1236 (1349)
Q Consensus 1175 ~LvpLLlH-L~D----~~~~V~~ack~tL~~~a~lL~~-~l~----~lf~~~------~~~~-~~~l~~-~~f~~~l~k~ 1236 (1349)
.++|+|.| |+- +.-.+|-++-.++.-+|.-.|- +.. ++.+-. ...+ +...+| -.|+..+|+.
T Consensus 516 ~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 516 RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence 34444433 332 2334555555555555544442 111 111110 1111 122233 5678889999
Q ss_pred HHHhCcchHHHHHHHHHHhh-------------------cCCCh-----------------hHHHHHHHHHHhhhccCch
Q 000696 1237 FVQHFPSRIDSYMGSTIQAF-------------------EAPWP-----------------IIQANAIYFSSSILCLCDD 1280 (1349)
Q Consensus 1237 L~~~~~~~~~~~l~~~l~yl-------------------kS~~~-----------------~IR~~A~~fiG~l~~~~~~ 1280 (1349)
|..+|-.....-+--.+.-- ...|. .=|..|+-.+|.+...+..
T Consensus 596 lg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 596 LGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred hchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh
Confidence 88877554443332221110 01111 1145566666655554433
Q ss_pred hhhhhccHHHHHH-HHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1281 QHILSLFYTQVFG-LLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1281 ~~~~~~~~e~l~~-~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
.. ..+.++++. .+-. |+-+..-.||..|++++..+.+.-.
T Consensus 676 ~F--~pYve~v~~l~v~~-l~f~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 676 AF--APYVEQVVELMVPL-LKFYFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred hh--hhHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33 245677777 4444 6778999999999999999885443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=7.2e-06 Score=104.98 Aligned_cols=774 Identities=16% Similarity=0.167 Sum_probs=425.7
Q ss_pred HHHHHHhcCcCCccchh-------hHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhccccccccchHhHHHHH
Q 000696 322 IDWMYKQANIAIPTNRL-------GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAAL 394 (1349)
Q Consensus 322 L~~ll~~~~~~~~~ere-------G~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l 394 (1349)
|+.++..++-.++..|| ++...+|-.=+.|+|+.+..+..=. .|.. . .+|.+-
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~---------------~d~s----~-~vr~~a 179 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM---------------TDPS----S-PVRVAA 179 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc---------------cCCc----c-hHHHHH
Confidence 44455555555555555 4556677777788888877774311 1221 2 389999
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHhhhhhHhhhh---hccchhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHH
Q 000696 395 ALMYGYAAKYAP-STVIEARIDALVGTNMLSRLL---HVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDY 470 (1349)
Q Consensus 395 ~l~yG~va~~ap-~~~il~~ve~~I~~~i~~~f~---~~kd~~~K~s~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~ 470 (1349)
...+|.++.+-+ ......++- ..++.++.... ...|...=...+.++..+.....+ +.=.+-.++++.
T Consensus 180 ~rA~~a~~~~~~~~~~~~~~~~-~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-------~l~~~l~~ii~~ 251 (1075)
T KOG2171|consen 180 VRALGAFAEYLENNKSEVDKFR-DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-------LLRPHLSQIIQF 251 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHH-HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHH
Confidence 999999999885 122223332 22332332222 223332224445555555444222 222245688899
Q ss_pred HHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCCCChhHHHHHHHHhh-hccccCCC---C----------cc-
Q 000696 471 ILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPND---P----------ID- 535 (1349)
Q Consensus 471 l~~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~~L~P~l~~e~~~~ll~~c~-~v~~lp~~---~----------~~- 535 (1349)
++.+.+.-..+ .+ +|+.|+..++.+++--|...-.. ..+....+ -++.++.+ + .+
T Consensus 252 ~l~Ia~n~~l~---~~------~R~~ALe~ivs~~e~Ap~~~k~~-~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 252 SLEIAKNKELE---NS------IRHLALEFLVSLSEYAPAMCKKL-ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHhhccccc---HH------HHHHHHHHHHHHHHhhHHHhhhc-hhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 99888765443 55 99999999999997744322211 12333333 33333322 1 11
Q ss_pred ---cHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHhhHHHhcChhHHhhhHHHHHHHHHHHHHHhhhhcccccCCC
Q 000696 536 ---VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGC 612 (1349)
Q Consensus 536 ---l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~ 612 (1349)
-+.-..++++.+=..+=-+ .-+--+++++...++|..-.+|.-|+.+++.+-. ||
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~---------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E-------------Gc 379 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGK---------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAE-------------GC 379 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChh---------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-------------cc
Confidence 2344566777543333211 2245677889999999999999999888765544 11
Q ss_pred CCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 000696 613 HGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSG 692 (1349)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~ 692 (1349)
|- + |. ..+-+++-+..+.-.||++.||..|..||..+ +- ....
T Consensus 380 ~~------~----m~-----------------~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~---st------dl~p- 422 (1075)
T KOG2171|consen 380 SD------V----MI-----------------GNLPKILPIVLNGLNDPHPRVRYAALNAIGQM---ST------DLQP- 422 (1075)
T ss_pred HH------H----HH-----------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh---hh------hhcH-
Confidence 11 1 11 25567788999999999999999999999754 11 1110
Q ss_pred cchhhhhhhhhhcH-HHHHHhccCCCCChhHHHHHHHHH---HHccCChhHHHHHHHHHHH----hccCCChh-hHHHHH
Q 000696 693 IDLELSYGALSSLE-DVIAILRSDASIDPSEVFNRIVSS---VCILLTKDELVATLHSCTT----AICDRTKQ-SAEGAI 763 (1349)
Q Consensus 693 ~~~~~~~~~l~~l~-d~~~~l~~~~~~~~~~~~~~i~~~---i~~~L~~~el~~ll~~ll~----~L~d~~~~-~~~~A~ 763 (1349)
..+. ..-+.+. -.+..+++ +.-..+..+-+.. |....+.+++..++-.+++ .|.++... ....|.
T Consensus 423 -~iqk--~~~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 423 -EIQK--KHHERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred -HHHH--HHHHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 0010 0000011 01122222 2223444443333 4467777888777766666 34444444 335555
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHH---HHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhcc
Q 000696 764 QAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLR---LETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISR 840 (1349)
Q Consensus 764 ~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r---~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~ 840 (1349)
..+-.+=..-+.++ ..-..+++-.+..-|.....+.-| -.++..+++.+
T Consensus 497 taIasvA~AA~~~F-~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~--------------------------- 548 (1075)
T KOG2171|consen 497 TAIASVADAAQEKF-IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA--------------------------- 548 (1075)
T ss_pred HHHHHHHHHHhhhh-HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH---------------------------
Confidence 56666666666666 334667777777666665533322 22233333322
Q ss_pred ccCCCCchhHHHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcc
Q 000696 841 LRGGWPMQDAFHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKV 918 (1349)
Q Consensus 841 L~~~lP~d~~W~al~~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~ 918 (1349)
+|+|. ..+++..+++.++..- .+- .+++ . + .+--..++..-+|+++-. .
T Consensus 549 -----------~AVGke~F~~~a~eliqll~~~~-~~~--~~~d-------d----~-~~sy~~~~warmc~ilg~---~ 599 (1075)
T KOG2171|consen 549 -----------RAVGKEKFLPLAEELIQLLLELQ-GSD--QDDD-------D----P-LRSYMIAFWARMCRILGD---D 599 (1075)
T ss_pred -----------HHhhhhhhhHhHHHHHHHHHhhc-ccc--hhhc-------c----c-cHHHHHHHHHHHHHHhch---h
Confidence 33333 2356777777777642 111 1110 0 1 111234555566665543 2
Q ss_pred hHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcC---------CCCChhhHH
Q 000696 919 GKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDG---------EQNDKEKWI 989 (1349)
Q Consensus 919 ~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g---------~W~~~e~~~ 989 (1349)
-.++.|.++-.|+.....-=+.... ++. ..+ +..+.+.+ ...+.+| +-++.++-.
T Consensus 600 ----F~p~L~~Vmppl~~ta~~~p~~~~~---d~~--d~e------~~~~~~~~-e~~~~~~~e~~~I~Tsvl~eK~~A~ 663 (1075)
T KOG2171|consen 600 ----FAPFLPVVMPPLLKTARLDPDVALS---DEE--DEE------EEQDLDGW-EVVELGDKENIGIRTSVLDEKETAC 663 (1075)
T ss_pred ----hHhHHHHHhHHHHHhhccCCcccCc---Cch--hhh------hccccccc-hhhccCCceeeeeeehhHHHHHHHH
Confidence 4445555555554444221111100 000 000 01111111 1111111 112567777
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHhhhhcc-cCccchHHHHHHHHHhhhcC-----CC---hhcHHHHHHHHHHhhcCC
Q 000696 990 NLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYS-----GG---FDSLLEQMVEALCRHVSD 1060 (1349)
Q Consensus 990 ~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s-~~~~~Ri~a~af~sELl~~~-----~~---~~~l~~~~i~~L~~~l~D 1060 (1349)
+.+...|.-+....-|++..++...+|.++- -++..|.+|+-.+-.++++- .. ...+.+.+...+...+.+
T Consensus 664 ~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~ 743 (1075)
T KOG2171|consen 664 EALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEE 743 (1075)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888888999999977777775 55888999988877777741 11 122345566777777755
Q ss_pred -CChhHHHHHhhhccCCc---------chhhhhhHHHHHHHHH-------hhccCC----ChhHHHHHHH----------
Q 000696 1061 -ESPTVRGLCLRGLVQIP---------SIHIHQYATQVLSVIL-------ALLDDL----DESVQLTAVS---------- 1109 (1349)
Q Consensus 1061 -~~~~VR~lslrGLgnl~---------~~~v~~~~~~lL~all-------~~L~d~----d~~V~leAm~---------- 1109 (1349)
|++.|-.-.+.++|+.- ..++......++..++ ....+. ++...-|.|.
T Consensus 744 E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i 823 (1075)
T KOG2171|consen 744 EPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAI 823 (1075)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHH
Confidence 68888888888887542 1121111111111111 111110 1112222222
Q ss_pred --HHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000696 1110 --CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1187 (1349)
Q Consensus 1110 --~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1187 (1349)
.+..+... .++.+-+++-++...+-.++.+.+.--|..|...||+++.+++... ..+.+ ..+++++.-++|.+
T Consensus 824 ~~i~~~l~k~-~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~-~~~~~---~~~p~~~~~~~d~~ 898 (1075)
T KOG2171|consen 824 SDILAALAKA-LKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEAS-AKYKE---RFLPLVLEALQDSD 898 (1075)
T ss_pred HHHHHHHHHH-ccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccccc-chHHH---HHHHHHHHHcCCCC
Confidence 22233322 3456778888888888888988887779999999999999765432 22222 46777888999999
Q ss_pred hhHHHHHHHHHHhhhhhhhhh-----------hhhhhccccCC-CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-
Q 000696 1188 LSVRQACRNTLKQVAPFMEIG-----------VYGIFNSHCFN-SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ- 1254 (1349)
Q Consensus 1188 ~~V~~ack~tL~~~a~lL~~~-----------l~~lf~~~~~~-~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~- 1254 (1349)
|+||+++.+.++-||.+-+-. +..+++..... +....-++.....++|.+. ++|..+. +.|.+.
T Consensus 899 pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~-~~~~~i~--vdqvl~~ 975 (1075)
T KOG2171|consen 899 PEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILL-FNPNRIP--VDQVLPA 975 (1075)
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHH-hCCccCc--HHHHHHH
Confidence 999999999999999664432 23444443211 2234456667777777554 4555555 666666
Q ss_pred -hhcCCChhHHHHHHHHHHhhhccCc
Q 000696 1255 -AFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1255 -ylkS~~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
+...|-..=+..|+...+++...+.
T Consensus 976 ~l~~LPl~~D~eEa~~iy~~l~~L~e 1001 (1075)
T KOG2171|consen 976 WLSWLPLKEDKEEAVPIYTFLSDLYE 1001 (1075)
T ss_pred HHHhCCCccchhhhhhHHHHHHHHHH
Confidence 3345655556666666666665444
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.11 E-value=0.00015 Score=90.55 Aligned_cols=1005 Identities=16% Similarity=0.169 Sum_probs=507.2
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCCchhhh-cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhccccccCCCccch
Q 000696 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1349)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1349)
|+.||.+++--.|.-|.+=|-.=+|.+.-.++ +--+-++..+-.+|.|.|..|..--++.+.-++.+ -++.=+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHH
Confidence 67899999999999998877776775544444 34566777777788999999988777776666532 244457
Q ss_pred heehhcccccCcccccccccccccCCCCchHHHHHHHHhHHHhhccchh---------hhhhhHHHHhhhccCcc-Cccc
Q 000696 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE---------MQHILWPLLLKMIIPRA-YTSA 151 (1349)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~lltttv~~---------m~~~LWP~LL~~i~p~~-yt~a 151 (1349)
++++...+-. .- ...++.|.++.=+|+.+-.-|+. .=.-+-|.|-.++.-.+ +.++
T Consensus 84 e~~ve~L~~~---~~-----------s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai 149 (1233)
T KOG1824|consen 84 ETIVENLCSN---ML-----------SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI 149 (1233)
T ss_pred HHHHHHHhhh---hc-----------cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh
Confidence 8888765521 00 12345667766666665443331 11223344444444422 2222
Q ss_pred hhhHHHHHHHHHHhhccCCCcccccccCCCCCCCHHHHHHHHHHHhcCCcc-cchhHHHHHHHHHHhCCCCCcchhhhHH
Q 000696 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLA-REQQATQILMVLYYLSPLFPTNIDLFWQ 230 (1349)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~-~~~rg~~~L~lL~~l~~~i~~~l~~~W~ 230 (1349)
-|-|+-.++.--+..| ++..+|+ ..++.=++--+++|-. -..+..-.|..|-...+ .....
T Consensus 150 ---~~e~lDil~d~lsr~g-~ll~~fh--------~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~------~~ly~ 211 (1233)
T KOG1824|consen 150 ---KCEVLDILADVLSRFG-TLLPNFH--------LSILKCLLPQLQSPRLAVRKKAITALGHLASSCN------RDLYV 211 (1233)
T ss_pred ---HHHHHHHHHHHHHhhc-ccCcchH--------HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC------HHHHH
Confidence 2333333332222111 1222332 1222222222333322 12345555555544444 34677
Q ss_pred hhHHHHHhhhccCCCCCCCcchHhhHHHHHHHHHHHhhhccccCcHHHHHHHH---HHhhhhcCC-CChhhHHHHHHHHH
Q 000696 231 DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNA---FTEQYVLYT-PDDDHSALLHRCLG 306 (1349)
Q Consensus 231 ~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~e---l~~ql~~y~-~~~~eK~fL~k~lG 306 (1349)
.-|..|+..|.+.+.+ +--.++=..|-...+.+ +..+..++..- +.+.-..-+ ++++-+-+..+.+|
T Consensus 212 ~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~a-----g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQA-----GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HHHHHHHhccCCCCch----HHHHHHHHHHHHHHHHh-----cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 7788888888765421 11123333333333332 22222222222 222111112 34455677888888
Q ss_pred HHHHhcCCh--hHHHHHHHHHHHh----cCcCCcc-------------------------c-----hhhHHHHHHHHhhh
Q 000696 307 ILLQKVADR--NYVCDKIDWMYKQ----ANIAIPT-------------------------N-----RLGLAKAMGLVAAS 350 (1349)
Q Consensus 307 ~~L~~~~~~--~~V~~~L~~ll~~----~~~~~~~-------------------------e-----reG~A~~~G~~A~~ 350 (1349)
..|..|... -++.+-+..+++- .||.... + |..-|+|+--.-++
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 888877432 1222223333321 1222211 1 88889999888888
Q ss_pred cHHHHHHHHHHHHhhhccccchhhhhhccccccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhHhhhhhcc
Q 000696 351 HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVR 430 (1349)
Q Consensus 351 Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~f~~~k 430 (1349)
|.+-+.+..+..+- ...+-||++- |.+|+-++-.|=..-.+.++- ++..-.+.-+.+ ..
T Consensus 363 R~E~L~~~~q~l~p--------~lI~RfkERE-----EnVk~dvf~~yi~ll~qt~~~-----~~~~~d~d~~e~---~g 421 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGP--------ALISRFKERE-----ENVKADVFHAYIALLKQTRPV-----IEVLADNDAMEQ---GG 421 (1233)
T ss_pred cHHHHHHHHHHhCH--------HHHHHHHHHh-----hhHHHHHHHHHHHHHHcCCCC-----cccccCchhhhc---cC
Confidence 88888887776654 2345566662 368888877776665555532 110000000000 00
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCC
Q 000696 431 HHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPK 510 (1349)
Q Consensus 431 d~~~K~s~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~~L~P~ 510 (1349)
-++-.-.+-+.+-.|.++|++ .|+ | ++ .+ +||.++..++.|+..-|-
T Consensus 422 ~~s~~~~L~~~~~~iVkai~~----------------------qlr-~--ks--~k------t~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 422 TPSDLSMLSDQVPLIVKAIQK----------------------QLR-E--KS--VK------TRQGCFLLLTELINVLPG 468 (1233)
T ss_pred CccchHHHHhhhHHHHHHHHH----------------------HHh-h--cc--cc------chhhHHHHHHHHHHhCcc
Confidence 001112333334444444433 222 1 11 22 788889989998887776
Q ss_pred CChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHhhHHHhcCh-hH--H-hhh
Q 000696 511 LTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSP-VE--Y-QRR 586 (1349)
Q Consensus 511 l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~-~~--~-eR~ 586 (1349)
.-.+....++.... |.+|. .+..-+--|++|.-+-..+...+ |+.+..+++.|.|-+.-. .+ | --.
T Consensus 469 ~l~~~~~slvpgI~--~~l~D-kSsss~~ki~~L~fl~~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKisa 538 (1233)
T KOG1824|consen 469 ALAQHIPSLVPGII--YSLND-KSSSSNLKIDALVFLYSALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKISA 538 (1233)
T ss_pred hhhhcccccchhhh--hhcCC-ccchHHHHHHHHHHHHHHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhhH
Confidence 55444444443222 33331 13455667888887776666654 577777777666554211 11 1 112
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHH--hhccccCCChh
Q 000696 587 RSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIM--YLPRCADTDSE 664 (1349)
Q Consensus 587 RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~--l~prC~D~~~~ 664 (1349)
-|+..+..+.++.+. ...|+.|..+| ..|.+..- =-..-.|.|.+
T Consensus 539 EAL~v~~~lvkvirp-----------------------------l~~~~~~d~~~----~v~~m~~~tl~rL~a~d~Dqe 585 (1233)
T KOG1824|consen 539 EALLVCQQLVKVIRP-----------------------------LQPPSSFDASP----YVKTMYDCTLQRLKATDSDQE 585 (1233)
T ss_pred HHHHHHHHHHHHhcc-----------------------------cCCCccCCCCh----hHHHHHHHHHHHHhcccccHH
Confidence 233333333332221 12233343332 33333222 12456899999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCCh-hHHHHHHHHHHHccCC-hhHHHH
Q 000696 665 VRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDP-SEVFNRIVSSVCILLT-KDELVA 742 (1349)
Q Consensus 665 ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~-~~~~~~i~~~i~~~L~-~~el~~ 742 (1349)
||..|+.|+..+..--. - .- ..+. ...|..+ .+++.++.+.-+ ..-+..|+-+- -.++ ...++.
T Consensus 586 VkeraIscmgq~i~~fg--D----~l---~~eL-~~~L~il---~eRl~nEiTRl~AvkAlt~Ia~S~-l~i~l~~~l~~ 651 (1233)
T KOG1824|consen 586 VKERAISCMGQIIANFG--D----FL---GNEL-PRTLPIL---LERLGNEITRLTAVKALTLIAMSP-LDIDLSPVLTE 651 (1233)
T ss_pred HHHHHHHHHHHHHHHHh--h----hh---hhhh-HHHHHHH---HHHHhchhHHHHHHHHHHHHHhcc-ceeehhhhHHH
Confidence 99999999988754321 0 00 0000 1111111 122322110000 00011222211 1222 333444
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHh---hccCch
Q 000696 743 TLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLA---ENTNSK 819 (1349)
Q Consensus 743 ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La---~~h~~~ 819 (1349)
.+..+..=++..+.....+.-..++.+++..|..+ -++..+.+..+++..-.++-++.+..|+..|+ ..++..
T Consensus 652 il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~----~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 652 ILPELASFLRKNQRALRLATLTALDKLVKNYSDSI----PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 44444444444444455666778999999999888 25677888888877766666655555555443 333221
Q ss_pred hHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccch
Q 000696 820 IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDD 899 (1349)
Q Consensus 820 vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~ 899 (1349)
+ .....++|+.++..++..-.
T Consensus 728 l-------------------------------------~~~~~~iL~~ii~ll~Spll---------------------- 748 (1233)
T KOG1824|consen 728 L-------------------------------------LKISNPILDEIIRLLRSPLL---------------------- 748 (1233)
T ss_pred H-------------------------------------HHHhhhhHHHHHHHhhCccc----------------------
Confidence 1 12345677777765544322
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-HHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHh
Q 000696 900 ILQAAILALTAFFRGGGKVGKKAVEKSYAPV-LAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILAR 978 (1349)
Q Consensus 900 ~~laA~~aL~Ell~~~~~~~~~av~~~fp~L-f~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~ 978 (1349)
+..|..++-.+|. ..|...+|.+ +.-|+.- +.+.-++.+..-+
T Consensus 749 -qg~al~~~l~~f~-------alV~t~~~~l~y~~l~s~--------------------------lt~PV~~~~~~~l-- 792 (1233)
T KOG1824|consen 749 -QGGALSALLLFFQ-------ALVITKEPDLDYISLLSL--------------------------LTAPVYEQVTDGL-- 792 (1233)
T ss_pred -cchHHHHHHHHHH-------HHHhcCCCCccHHHHHHH--------------------------HcCCcccccccch--
Confidence 1223444443333 3344444443 2222221 2222222221111
Q ss_pred cCCCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccC--ccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHH
Q 000696 979 DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ--RFQREAAAAALSEFVRYSGG--FDSLLEQMVEAL 1054 (1349)
Q Consensus 979 ~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~--~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L 1054 (1349)
....| ..+...+.++....+..-+.+...+..-++++. +.-|+.|+..|.|+-+.-.. ...+ -...
T Consensus 793 -----~kqa~-~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~----~~~i 862 (1233)
T KOG1824|consen 793 -----HKQAY-YSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNEL----KDTI 862 (1233)
T ss_pred -----hHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhh----HHHH
Confidence 11222 222223333344445567788888888777544 56677888888898875432 2222 2367
Q ss_pred HhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh
Q 000696 1055 CRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1134 (1349)
Q Consensus 1055 ~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~l 1134 (1349)
.+.++.|+..|+..|-.+||+++.+....|.|-++.-+-+ +..-..--+..|..++....-....+...+|=-.+
T Consensus 863 ieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~s-----qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL 937 (1233)
T KOG1824|consen 863 IEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIES-----QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALL 937 (1233)
T ss_pred HHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhc-----chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 7788999999999999999999988777776665554322 22222333344444444333333333333333333
Q ss_pred cCcCCCCChHHHHHHHHHHHHhhcc------------------------------CCCcchHHHHHHHHhhhhHHHHhcc
Q 000696 1135 RNLQVSMNVKMRRNAFAAFGALSNF------------------------------GVGSQREAFLEQIHAMLPRLILHIY 1184 (1349)
Q Consensus 1135 rpffede~~~vR~aAi~LfG~L~~~------------------------------~~~~~~~~~~eQv~~~LvpLLlHL~ 1184 (1349)
..--|...+..|..-.+.+|.|+-+ .-....+++..-+.+.+-..+.-++
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~ 1017 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLR 1017 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHh
Confidence 3333444455555555555555432 1122333333345566777888899
Q ss_pred CCChhHHHHHHHHHHhhhhh------------hhh-----hh-hhhhc-------cccCCCCCCCChHHHHHHHHHHHHH
Q 000696 1185 DDDLSVRQACRNTLKQVAPF------------MEI-----GV-YGIFN-------SHCFNSDHRSDYETFVRDLTRQFVQ 1239 (1349)
Q Consensus 1185 D~~~~V~~ack~tL~~~a~l------------L~~-----~l-~~lf~-------~~~~~~~~~l~~~~f~~~l~k~L~~ 1239 (1349)
|++..|++++--+|...++. |-| ++ +++.. +|.. |++++-+...-+..=-|.+
T Consensus 1018 dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~V--DdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTV--DDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccc--cchHHHHHHHHHHHHHHHH
Confidence 99999999998888877732 111 11 11111 1211 1244433322222223445
Q ss_pred hCcchH--HHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhh
Q 000696 1240 HFPSRI--DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQH 1282 (1349)
Q Consensus 1240 ~~~~~~--~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~ 1282 (1349)
.+-+++ ..|+.-...=+++. .+||.-.-..+..+....|..-
T Consensus 1096 scld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~V 1139 (1233)
T KOG1824|consen 1096 SCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAV 1139 (1233)
T ss_pred hhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHH
Confidence 544443 34555444455554 6777766655666666666433
No 6
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=7e-09 Score=119.14 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=157.6
Q ss_pred HHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhh-cCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000696 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH-VSDESPTVRGLCLRGLVQIPSIHIHQYAT 1086 (1349)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~-l~D~~~~VR~lslrGLgnl~~~~v~~~~~ 1086 (1349)
+.++..+.+.+++++...|..|+..++++-..... .+..+..|... ++|+++.||..++.+||++..... ...+
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LYSP 127 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-ccch
Confidence 45666667778899999999999999997542211 23455566655 799999999999999999865422 1235
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchH
Q 000696 1087 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1166 (1349)
Q Consensus 1087 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1166 (1349)
.+++.+...+.|.+..|+..|+.+|+++-. ...-+ .|.++.+|+++.||..|+..+|.+.. +..
T Consensus 128 ~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----~~ai~-------~L~~~L~d~~~~VR~~A~~aLg~~~~---~~~-- 191 (280)
T PRK09687 128 KIVEQSQITAFDKSTNVRFAVAFALSVIND----EAAIP-------LLINLLKDPNGDVRNWAAFALNSNKY---DNP-- 191 (280)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhccCC----HHHHH-------HHHHHhcCCCHHHHHHHHHHHhcCCC---CCH--
Confidence 567778888888888999999999987642 22222 23456789999999999999999821 111
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHH
Q 000696 1167 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1246 (1349)
Q Consensus 1167 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~ 1246 (1349)
....+|+-.|+|+++.|++++..+|++++. +..+..+
T Consensus 192 -------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------------------~~av~~L------------- 228 (280)
T PRK09687 192 -------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------------------KRVLSVL------------- 228 (280)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------------------hhHHHHH-------------
Confidence 244556666799999999999999988553 1122222
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000696 1247 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1247 ~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1317 (1349)
+.+++++. +|..|+.-+|.+ +.+..+.+|+.++.++||+.|+.+|-+||..
T Consensus 229 ------i~~L~~~~--~~~~a~~ALg~i------------g~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 ------IKELKKGT--VGDLIIEAAGEL------------GDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ------HHHHcCCc--hHHHHHHHHHhc------------CCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 22444444 455566666633 3356788899833359999999999999753
No 7
>PRK09687 putative lyase; Provisional
Probab=99.00 E-value=1.8e-08 Score=115.85 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=39.1
Q ss_pred HhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1254 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1254 ~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
.-++++.+.||.+|++.+|.+. .+.++..|.. .++|++ ||..|++|||.++.
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~------------~~~av~~Li~-~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRK------------DKRVLSVLIK-ELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccC------------ChhHHHHHHH-HHcCCc--hHHHHHHHHHhcCC
Confidence 3457888889999998888532 2566777888 677766 78889999888873
No 8
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=4.9e-08 Score=114.34 Aligned_cols=473 Identities=27% Similarity=0.243 Sum_probs=294.0
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhc
Q 000696 426 LLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLV 505 (1349)
Q Consensus 426 f~~~kd~~~K~s~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~ 505 (1349)
+++....+.|++-+.+....+.++....+.+.-|+.+++++.++++...|..|-. +-+..+-......+..++++++
T Consensus 20 l~h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~~---a~sl~~v~~~~a~~~~~~~t~v 96 (533)
T KOG2032|consen 20 LLHVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREGF---AESLLEVLHTQALALNACTTLV 96 (533)
T ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhhh---hhhhcchhhhHHHHHHHHHHHH
Confidence 3456777889999999999999998887777788999999999999999987532 2222344446778899999999
Q ss_pred ccCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH-HHHhhhcCCCCcccHHHHHHHHHhhHHHhcChhHHh
Q 000696 506 TVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLL-CAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQ 584 (1349)
Q Consensus 506 ~L~P~l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL-~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~e 584 (1349)
-.+|.+..+++..++. +|.+++.-+-.+- +.+-.++| ..+ ++
T Consensus 97 l~e~~lti~~g~~v~~--------------lypqlf~llLllvscvlg~k~p-------~~l----------------qa 139 (533)
T KOG2032|consen 97 LVEPKLTIETGNRVMK--------------LYPQLFSLLLLLVSCVLGLKSP-------DSL----------------QA 139 (533)
T ss_pred HHHHhhhhhcCchHHH--------------hhHHHHHHHHHHHHHHhhccCc-------ccH----------------HH
Confidence 9999998888887773 3444433222111 11112221 222 22
Q ss_pred hhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH-HhhccccCCCh
Q 000696 585 RRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDS 663 (1349)
Q Consensus 585 R~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg-~l~prC~D~~~ 663 (1349)
|+|- .+...++ +....+-.+| .. +..|+|.+-| ..+--|+|-++
T Consensus 140 ~~r~--~~~~al~-~~~~~pc~~~---------------------ta-----------tl~cl~lqsa~e~~~~~sde~~ 184 (533)
T KOG2032|consen 140 LSRL--EDVIALL-KSLVAPCHSC---------------------TA-----------TLCCLILQSAEEAIQAVSDEVS 184 (533)
T ss_pred HHHH--HhHHHHH-HhhhhHHHHh---------------------HH-----------HHHHHHHHHhHHHHHHhhhccc
Confidence 3332 2333333 1111110111 11 2358999888 88999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHHHHHccCCh--h
Q 000696 664 EVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVSSVCILLTK--D 738 (1349)
Q Consensus 664 ~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~---~i~~~i~~~L~~--~ 738 (1349)
.+-.++.+...+...++- +++.-+...+.+. ..- ++.. +.++++..++.... .+++...+..-+ .
T Consensus 185 ~~w~qls~~~~h~~g~tr-lqr~m~~~~~~~~---~~i---l~q~---~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~ 254 (533)
T KOG2032|consen 185 RRWSQLSDNDIHRVGLTR-LQRFMACVQDLEM---GKI---LAQL---LSSITSEKENGRITDIAFFAELKRPKELDKTG 254 (533)
T ss_pred chhhhcccCcccHHHHHH-HHHHHHhhCCccH---HHH---Hhhc---ccccchhcccchHHHHHHHHHHhCcccccccc
Confidence 988888777777777753 3331111111010 001 1111 01111111111111 344444444433 5
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCc
Q 000696 739 ELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS 818 (1349)
Q Consensus 739 el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~ 818 (1349)
-+.+++..+.+...||+.....-|+..|......-..+. .+.++.++++|+..|...... ..++++|.+|+.--..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~~---~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLNE---EVQLEAMKCLTMVLEK 330 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHh
Confidence 677899999999999999888888887777776644555 356889999999999888774 4566777776655433
Q ss_pred hhHHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCc-----cCCCCC
Q 000696 819 KIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDME-----KGDYSS 889 (1349)
Q Consensus 819 ~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~----~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~-----~~~~~~ 889 (1349)
.+.++ + -++++|++. +|..-..+-..+.-+|-.-|.++.+++..+...| ...+..
T Consensus 331 ~~~~~-l---------------~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll 394 (533)
T KOG2032|consen 331 ASNDD-L---------------ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL 394 (533)
T ss_pred hhhcc-h---------------hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee
Confidence 33322 2 267888875 8999999999999999999999999987765431 234444
Q ss_pred CCCCCCccchHH--HHHHHHHHHHHhcCCcchHHHHHHhhH---HHHHHHHHHhhh---cccCCCCCCCCh--HHHHHHH
Q 000696 890 HSADTWIDDDIL--QAAILALTAFFRGGGKVGKKAVEKSYA---PVLAALTLQLGS---CHGLASSGQHEP--LRAILTS 959 (1349)
Q Consensus 890 ~~~~~~~~~~~~--laA~~aL~Ell~~~~~~~~~av~~~fp---~Lf~aLL~ql~~---~~~~~~~~~~~P--~~~aleA 959 (1349)
|-. +..| .+|-.+..-+.+-+ -+++++..+|| +..++ -.|..| |+.+.. ..| .-...++
T Consensus 395 hl~-----d~~p~va~ACr~~~~~c~p~--l~rke~~~~~q~~ld~~~~-~~q~Fyn~~c~~L~~---i~~d~l~~~~t~ 463 (533)
T KOG2032|consen 395 HLQ-----DPNPYVARACRSELRTCYPN--LVRKELYHLFQESLDTDMA-RFQAFYNQWCIQLNH---IHPDILMLLLTE 463 (533)
T ss_pred eeC-----CCChHHHHHHHHHHHhcCch--hHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHhh---hCHHHHHHHHHh
Confidence 543 3445 56667777666666 89999999999 44443 344433 333322 334 3367788
Q ss_pred HHHHHHhhcch-HHHHHHHhcCCCC---ChhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 000696 960 FQAFCECVGDL-EMRKILARDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLIL 1014 (1349)
Q Consensus 960 lk~ll~~~g~~-~~~~~L~~~g~W~---~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L 1014 (1349)
.+.++++++.. .+...+..+..|+ ...-+.-|+..|+.++...+.+..+.+...-
T Consensus 464 ~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a 522 (533)
T KOG2032|consen 464 DQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSA 522 (533)
T ss_pred chhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHH
Confidence 88888887732 2334445556777 3344455566677777776555455544433
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.91 E-value=3.5e-08 Score=130.78 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=156.5
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHH
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQV 1088 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~l 1088 (1349)
+.+..|...|++++...|..|+..+.++- .+..+..|.+.++|+++.||..++.+|+.++.... .
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------~ 685 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT---------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------P 685 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc---------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------c
Confidence 36677788888888888888887777752 26677888888888888888888888877642100 1
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1168 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1168 (1349)
.+++...|++.|..|+..|+..|+.+-. .... . +...++|+++.||.+|+..+|.+.. .
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~-~-------l~~~L~D~d~~VR~~Av~aL~~~~~------~--- 744 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA----GDAA-L-------FAAALGDPDHRVRIEAVRALVSVDD------V--- 744 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHH-H-------HHHHhcCCCHHHHHHHHHHHhcccC------c---
Confidence 2345556666777788888888777531 1111 1 1225678888888888888887532 0
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchHHH
Q 000696 1169 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDS 1247 (1349)
Q Consensus 1169 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~-~~~~~~ 1247 (1349)
.+|+..+.|+++.|+.++..+|...+.--.-.+..+.. . ++|+. ...-......|.+.. +..+
T Consensus 745 --------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~-l-l~D~d----~~VR~aA~~aLg~~g~~~~~-- 808 (897)
T PRK13800 745 --------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA-L-TGDPD----PLVRAAALAALAELGCPPDD-- 808 (897)
T ss_pred --------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH-H-hcCCC----HHHHHHHHHHHHhcCCcchh--
Confidence 12455688999999998888888876421101122221 1 22321 233333344444433 2222
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000696 1248 YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1248 ~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
....+..++++.+.+|.+|+..+|.+. .+.....|.. +++||++.||..|++||+.+
T Consensus 809 -~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 809 -VAAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVE-ALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -HHHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence 122445678888889999998888442 2344567888 78999999999999998885
No 10
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.88 E-value=8.8e-08 Score=127.08 Aligned_cols=242 Identities=20% Similarity=0.166 Sum_probs=170.1
Q ss_pred HHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000696 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1087 (1349)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~ 1087 (1349)
+..+..|...|++++...|..|+..+.++...... ...|...+.|+++.||..+++.|+.+.....
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~------ 716 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDA------ 716 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH------
Confidence 44666777888999999999999999987432111 1256667789999999999999998764321
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHH
Q 000696 1088 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1167 (1349)
Q Consensus 1088 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~ 1167 (1349)
..++..|.|.|..|+.+|+.+|+++-. ... +..+++|+++.||.+|...+|.+.....
T Consensus 717 --~~l~~~L~D~d~~VR~~Av~aL~~~~~------~~~--------l~~~l~D~~~~VR~~aa~aL~~~~~~~~------ 774 (897)
T PRK13800 717 --ALFAAALGDPDHRVRIEAVRALVSVDD------VES--------VAGAATDENREVRIAVAKGLATLGAGGA------ 774 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHhcccC------cHH--------HHHHhcCCCHHHHHHHHHHHHHhccccc------
Confidence 245667889999999999999998521 111 2357899999999999999999865111
Q ss_pred HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhh--hhhhhhhhhccccCCCCCCCChHHHHHH-HHHHHHHhCcch
Q 000696 1168 FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF--MEIGVYGIFNSHCFNSDHRSDYETFVRD-LTRQFVQHFPSR 1244 (1349)
Q Consensus 1168 ~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l--L~~~l~~lf~~~~~~~~~~l~~~~f~~~-l~k~L~~~~~~~ 1244 (1349)
..+..|+--++|+++.|+.++-.+|..++.- .--.+... +.++. ..++. ....|..--+.
T Consensus 775 ------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a-----L~d~d-----~~VR~~Aa~aL~~l~~~- 837 (897)
T PRK13800 775 ------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA-----LRASA-----WQVRQGAARALAGAAAD- 837 (897)
T ss_pred ------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH-----hcCCC-----hHHHHHHHHHHHhcccc-
Confidence 1134445557899999999999999998742 10112222 22221 12333 34444433222
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000696 1245 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1316 (1349)
Q Consensus 1245 ~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1316 (1349)
.-+...+..+++|.+.||.+|+.-+|.+ .. ......+|.. .++|+|+.||..|++||.
T Consensus 838 --~a~~~L~~~L~D~~~~VR~~A~~aL~~~--~~---------~~~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 --VAVPALVEALTDPHLDVRKAAVLALTRW--PG---------DPAARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred --chHHHHHHHhcCCCHHHHHHHHHHHhcc--CC---------CHHHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 2335566688999999999999999975 11 1445667888 789999999999999986
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=98.74 E-value=2.9e-06 Score=108.62 Aligned_cols=317 Identities=13% Similarity=0.107 Sum_probs=209.0
Q ss_pred hhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChh
Q 000696 985 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1064 (1349)
Q Consensus 985 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~ 1064 (1349)
...-.+|+..+-..|..+. .+..++-.+++.+++.+-..|-..-.++..+..... .+.--++|.|.+-++|+||.
T Consensus 46 ~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p---elalLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP---EKALLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh---HHHHHHHHHHHHHcCCCCHH
Confidence 4555788887888777654 577788888888889988888888888888755322 22223589999999999999
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChH
Q 000696 1065 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1144 (1349)
Q Consensus 1065 VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1144 (1349)
+|.+|||.|+++...+ ..+.+++++..++.|.+.-|+-.|..++.++.+.-.+..... .+..++..+..|.++.
T Consensus 121 IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~---~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 121 VRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ---DFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---chHHHHHHHhcCCCcc
Confidence 9999999999998643 456788999999999999999999999999987533211111 1223344568899999
Q ss_pred HHHHHHHHHHHhhccCCC-----------------cchHH------------------HHHHHHhhhhHHHHhccCCChh
Q 000696 1145 MRRNAFAAFGALSNFGVG-----------------SQREA------------------FLEQIHAMLPRLILHIYDDDLS 1189 (1349)
Q Consensus 1145 vR~aAi~LfG~L~~~~~~-----------------~~~~~------------------~~eQv~~~LvpLLlHL~D~~~~ 1189 (1349)
|..+|+.++-++...+.. ...++ -.+.+... ++-+|+-.|+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~---l~~~Lq~~N~A 271 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTR---VLPRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHH---HHHHhcCCCHH
Confidence 999999988777542110 00011 11223333 44445557899
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhhhhcc------ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000696 1190 VRQACRNTLKQVAPFMEI-GVYGIFNS------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1262 (1349)
Q Consensus 1190 V~~ack~tL~~~a~lL~~-~l~~lf~~------~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1262 (1349)
|+-+|-.++....+...- ....++.+ .....+....|- .++. ...+.+.+|+.+..++..-.-.+++|..
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv-aLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y- 348 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYI-VCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPF- 348 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHH-HHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHH-
Confidence 999998898888765322 11221111 001122344442 3333 3677788888877765554444555553
Q ss_pred HHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-Hhcccccc
Q 000696 1263 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KSINSHSW 1327 (1349)
Q Consensus 1263 IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~~~~~~ 1327 (1349)
||..+.-.+-.++... ..+.+++-|..+ ..|.|+.+++.|.+|+|.+- |+.+...|
T Consensus 349 IK~~KLeIL~~Lane~--------Nv~~IL~EL~eY-a~d~D~ef~r~aIrAIg~lA~k~~~~a~~ 405 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPS--------VAPEILKELAEY-ASGVDMVFVVEVVRAIASLAIKVDSVAPD 405 (746)
T ss_pred HHHHHHHHHHHHcCcc--------cHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhChHHHHH
Confidence 7777776665554333 235566667773 56888888888888888876 44443333
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.60 E-value=7.2e-05 Score=102.98 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=194.6
Q ss_pred HHHHHhhhhcccCccchHHHHHHHHHhhhcCCC-hhcHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhH
Q 000696 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYA 1085 (1349)
Q Consensus 1010 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~~~~ 1085 (1349)
.+..|+.+|.+++...+..|+..+.-+-..... ...+.+. .+..|.+-+..+++.+|.-|+-.|+|++.+ +.+...
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 467788888888888888888777766543322 1222222 566777777899999999999999999864 333323
Q ss_pred --HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1086 --TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1086 --~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
..+++.++..|.+.+..+...|..+|.+++..-+...+. .+..++..+++.+...+++.+|.+...+.+.
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~--------~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS--------QLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHH--------HHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 357889999999988899999999999998875544332 2334588888999999999999998754432
Q ss_pred chHHHHHHH---HhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000696 1164 QREAFLEQI---HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1164 ~~~~~~eQv---~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~ 1240 (1349)
.+..+. .+++.+|.--|+.+++.+.+.+..++..++.- . .+.|..++..
T Consensus 599 ---d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~-----------------------~d~~~avv~a 650 (2102)
T PLN03200 599 ---DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--R-----------------------QDLCESLATD 650 (2102)
T ss_pred ---HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--C-----------------------hHHHHHHHHc
Confidence 233332 36777777777888999999888888776641 0 0112222211
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1241 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
. -+...+..+++....+|..|++-+|.+......+++..+-...++..|.. |++++|+.|+..|+.||..+.+
T Consensus 651 g------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 651 E------IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK-LAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred C------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHc
Confidence 1 13445667888899999999999999988666555444333457888999 8999999999999999999986
Q ss_pred hc
Q 000696 1321 SI 1322 (1349)
Q Consensus 1321 ~~ 1322 (1349)
..
T Consensus 724 ~~ 725 (2102)
T PLN03200 724 DP 725 (2102)
T ss_pred Cc
Confidence 44
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.56 E-value=7.2e-06 Score=102.99 Aligned_cols=308 Identities=19% Similarity=0.223 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCCh
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1063 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1063 (1349)
+...-.+++..|...+..+. .+...+-.++.++.+.+-..|-.+-.+++.+...... +.--++|.+.+-+.|+||
T Consensus 19 ~~~~~~~~l~kli~~~~~G~--~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~---~~~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGY--DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE---LLILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhhcCCCH
Confidence 45566677777777666544 3557777788888888888899998899998775433 223368999999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCCh
Q 000696 1064 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1143 (1349)
Q Consensus 1064 ~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~ 1143 (1349)
.+|.+|||.|+++....+ .+.+++.+...+.|.+..|+..|+.++.++...- ++.+... +...+..++.|.++
T Consensus 94 ~~~~lAL~~l~~i~~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~---~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDE---LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHHHHH-SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGG---HHHHHHHHTTHSSH
T ss_pred HHHHHHHhhhhhhcccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHH---HHHHHhhhccCCcc
Confidence 999999999999986543 5678899999999999999999999999999873 3333331 34556777899999
Q ss_pred HHHHHHHHHHHHhhccCCCcchH--HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-h-----hhhhhcc
Q 000696 1144 KMRRNAFAAFGALSNFGVGSQRE--AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-----VYGIFNS 1215 (1349)
Q Consensus 1144 ~vR~aAi~LfG~L~~~~~~~~~~--~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~-----l~~lf~~ 1215 (1349)
.|+.+|+.++..+ + ..... .+..++...+..++ .+++|-+...+-..|...++.-.. . +..+...
T Consensus 167 ~V~~~a~~~l~~i-~---~~~~~~~~~~~~~~~~L~~~l---~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 167 SVVSAALSLLSEI-K---CNDDSYKSLIPKLIRILCQLL---SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp HHHHHHHHHHHHH-H---CTHHHHTTHHHHHHHHHHHHH---TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-c---cCcchhhhhHHHHHHHhhhcc---cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 9999999999999 2 11111 23333333333322 788888877777777777654333 2 1111111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHH
Q 000696 1216 HCFNSDHRSDYETFVRDLTRQFVQHFPS--RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1293 (1349)
Q Consensus 1216 ~~~~~~~~l~~~~f~~~l~k~L~~~~~~--~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~ 1293 (1349)
+. ......+-+.++.+..-.+. .+...+.....++.|+.+++|-.|..-+..+....++.-. .....
T Consensus 240 --l~----s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~-- 308 (526)
T PF01602_consen 240 --LQ----SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLI-- 308 (526)
T ss_dssp --HH----HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHH--
T ss_pred --hh----ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhh--
Confidence 00 01133444555555543333 3466677777788888888988888777777766522111 11111
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1294 LLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1294 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
+.- ++.|+|+.||..|.+.|..+.+..|
T Consensus 309 -~~~-l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 309 -LFF-LLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp -HHH-HHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred -hhe-ecCCCChhHHHHHHHHHhhcccccc
Confidence 222 4557777787777777666654443
No 14
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=5.9e-06 Score=100.23 Aligned_cols=312 Identities=18% Similarity=0.151 Sum_probs=207.7
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHH-Hhhhcc----CCcchhhhh
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL-CLRGLV----QIPSIHIHQ 1083 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~l-slrGLg----nl~~~~v~~ 1083 (1349)
.+...+...++++....|.-|..-++.+.+.......--..++..|.+..+|-++.-|+- ++.+.- +++ .-...
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EP 212 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEP 212 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCc
Confidence 344444555666666777777777777777553322222347889999999987776664 333221 222 14567
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1084 ~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
|.-.+++.++..+.|....|+-.|+.+..-++..++..++..++.++.. .++++ ...=..+|++++|.++...
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~---~l~~~-kWrtK~aslellg~m~~~a--- 285 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG---SLLEA-KWRTKMASLELLGAMADCA--- 285 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH---HHHHH-hhhhHHHHHHHHHHHHHhc---
Confidence 8888999999999999999999999999999999999999988877654 33444 6666789999999887622
Q ss_pred chHHHHHHHHhhhh-HHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccc--cCCCCCCCChHHHHHHHHH-HHH
Q 000696 1164 QREAFLEQIHAMLP-RLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFVRDLTR-QFV 1238 (1349)
Q Consensus 1164 ~~~~~~eQv~~~Lv-pLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~--~~~~~~~l~~~~f~~~l~k-~L~ 1238 (1349)
..-.+.-...++ .|.--|.|..|.|+++...|+.+.+.+... .+.....+. ++.+-.+ .-++-+..+.+ .++
T Consensus 286 --p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 286 --PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC-YTPECLDSLGATTFV 362 (569)
T ss_pred --hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc-chHHHHHhhcceeee
Confidence 122233333444 455778999999999999999999998887 655444332 1222110 00111111110 000
Q ss_pred Hh-CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000696 1239 QH-FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1239 ~~-~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1317 (1349)
.. -+-.+...+--.-.=+......+++.++..+|.+....++...-......++.+|.. -..||+|.||..|+.|||.
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-NLDDAVPEVRAVAARALGA 441 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-HhcCCChhHHHHHHHHHHH
Confidence 00 011222222222234455566788999999999999997666666778999999999 7999999999999999987
Q ss_pred HH------Hhccccccccccc
Q 000696 1318 LL------KSINSHSWRSTRL 1332 (1349)
Q Consensus 1318 l~------k~~~~~~~~~~~~ 1332 (1349)
+. +|-..++|....+
T Consensus 442 l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 442 LLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred HHHHHHhhcccccccHHHHhh
Confidence 76 3455666765444
No 15
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.49 E-value=0.013 Score=74.18 Aligned_cols=321 Identities=15% Similarity=0.111 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHhhhc-CchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHHHhhcCCCC
Q 000696 986 EKWINLIGDVAGCVSIK-RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDES 1062 (1349)
Q Consensus 986 e~~~~gV~lLAr~m~~~-~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~ 1062 (1349)
-+-..+.+++|.+-.+- ..+....++..+..+++.....-|.+...++-+|+.+... ..++.+.++..+..-+.+++
T Consensus 627 l~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesd 706 (1233)
T KOG1824|consen 627 LTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESD 706 (1233)
T ss_pred HHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHH
Confidence 33445555566543332 2456677777777777777777777777777777775422 34555666666666666666
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcc-----------------------------------------C
Q 000696 1063 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLD-----------------------------------------D 1098 (1349)
Q Consensus 1063 ~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~-----------------------------------------d 1098 (1349)
.-|-.+++-=|..++.. -+-+....+|+.++..+. +
T Consensus 707 lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~ 786 (1233)
T KOG1824|consen 707 LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE 786 (1233)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc
Confidence 66655555533322211 011111122222222211 1
Q ss_pred CC-hhHHHHHHHHHHHHhccCC---cCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 000696 1099 LD-ESVQLTAVSCLLTILKSSS---KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1174 (1349)
Q Consensus 1099 ~d-~~V~leAm~~L~~lL~~l~---~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1174 (1349)
.. +.+--.|...++++...+. ++...++..++...++. .+.++.+|..|+--||++++...-.....+..
T Consensus 787 ~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~---- 860 (1233)
T KOG1824|consen 787 QVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRRKDLSPQNELKD---- 860 (1233)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccCCCCCcchhhHH----
Confidence 00 0122333333444332221 22334555555555555 57788999999999999998433322222322
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHhhhh-hhhhhhhhhhccccCCCC---------------CCCC-hHHHHHHHHHHH
Q 000696 1175 MLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEIGVYGIFNSHCFNSD---------------HRSD-YETFVRDLTRQF 1237 (1349)
Q Consensus 1175 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~-lL~~~l~~lf~~~~~~~~---------------~~l~-~~~f~~~l~k~L 1237 (1349)
..+-.++-++.+|..|+.+||+.++. .+.-.+..++..-.-+.. ...+ +...+.+||..|
T Consensus 861 ---~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL 937 (1233)
T KOG1824|consen 861 ---TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALL 937 (1233)
T ss_pred ---HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 44567788999999999999999985 222211111110000000 0111 122344556655
Q ss_pred HHhCcch---H----------------HHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHH
Q 000696 1238 VQHFPSR---I----------------DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1298 (1349)
Q Consensus 1238 ~~~~~~~---~----------------~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1298 (1349)
.++..+. . ..++-..-.++.|+.+..|..++.-+-|.+..-+ +... ....+-++.+..
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p-~~id-~~lk~~ig~fl~- 1014 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP-QPID-PLLKQQIGDFLK- 1014 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC-CccC-HHHHHHHHHHHH-
Confidence 5443221 1 2234444458899999999998877777665443 1111 112334556666
Q ss_pred hccCCChhHHHHHHHHHHHH
Q 000696 1299 LSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1299 Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
+.+|||+.||+.|-.++.-.
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSA 1034 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHH
Confidence 79999999999999987544
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.35 E-value=0.00046 Score=95.34 Aligned_cols=270 Identities=12% Similarity=0.076 Sum_probs=186.4
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHH-H-HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-E-QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1086 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~-~-~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~ 1086 (1349)
+.+..|+.+|++++...+.-|++.++.+-.++...+..+ + .++..|.+-+++.++.+|.-++.+|.|+..+.- +
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d----~ 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD----A 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----h
Confidence 456677788889888889999999998876432223333 2 255667777788899999999999999975411 1
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh---HHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1087 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1087 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~---l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
..++.+.+.|...+..+...++.+|++++...+..+.... --.-...|-.+.+++++.++..|....+++....
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~--- 640 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR--- 640 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---
Confidence 2335555667666777888889999999875554321100 0012234456788999999999999999998721
Q ss_pred chHHHHHHHH--hhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000696 1164 QREAFLEQIH--AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1164 ~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~ 1240 (1349)
....+++. +.++||+.+|+..+.+|++.+..||...+.--.- ....+...
T Consensus 641 --~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~------------------------- 693 (2102)
T PLN03200 641 --QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE------------------------- 693 (2102)
T ss_pred --hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc-------------------------
Confidence 22233322 7899999999999999999999998887642111 11111111
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1241 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
+ -+.-.+..++++...++..|+.-++.+.+..+.. .++..+..+..|.+ ++++-.+.+|..|+.||..|.+
T Consensus 694 --G----aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~~~~~I~~Lv~-lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 694 --D----AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEALAEDIILPLTR-VLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred --C----CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHHhcCcHHHHHH-HHHhCChHHHHHHHHHHHHHHh
Confidence 0 1112244778888999999999889888877522 22334556788999 7888999999999999988884
Q ss_pred h
Q 000696 1321 S 1321 (1349)
Q Consensus 1321 ~ 1321 (1349)
.
T Consensus 765 ~ 765 (2102)
T PLN03200 765 H 765 (2102)
T ss_pred C
Confidence 3
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.33 E-value=3.4e-05 Score=93.03 Aligned_cols=207 Identities=11% Similarity=-0.003 Sum_probs=142.8
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1130 (1349)
+..|.+.+.|+++.||.-+.++||.+.. +...+.++..|.+.+..|...++.+++.... .. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~~-~~----- 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----DP-GP----- 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----Ch-HH-----
Confidence 6788889999999999999999999986 5667888888988888888888877777321 11 12
Q ss_pred HhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hh
Q 000696 1131 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV 1209 (1349)
Q Consensus 1131 ~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l 1209 (1349)
.+.++++|+++.||..|+..+|.+..- ..+.+|...+.|+|+.|+.++-.++...+.--.| .+
T Consensus 151 --~L~~~L~d~d~~Vra~A~raLG~l~~~--------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 151 --ALEAALTHEDALVRAAALRALGELPRR--------------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred --HHHHHhcCCCHHHHHHHHHHHHhhccc--------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 234667899999999999999998751 1334456669999999999999999888764344 33
Q ss_pred hhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHH
Q 000696 1210 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1289 (1349)
Q Consensus 1210 ~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e 1289 (1349)
...... .| .. ....+...+..--.. ..+......++++. +|.+|+..+|.+.. .
T Consensus 215 ~~~~~~----~g-~~----~~~~l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p 268 (410)
T TIGR02270 215 RRFQVL----EG-GP----HRQRLLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD------------V 268 (410)
T ss_pred HHHHhc----cC-cc----HHHHHHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC------------c
Confidence 332221 11 11 111222233222222 34444455677765 89999999996653 2
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1290 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1290 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
.....|+. +..|+. +|+.|.+|+..+-
T Consensus 269 ~av~~L~~-~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 269 EAAPWCLE-AMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred chHHHHHH-HhcCcH--HHHHHHHHHHHhh
Confidence 24556777 455554 9999999977764
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=4.8e-06 Score=104.57 Aligned_cols=309 Identities=18% Similarity=0.169 Sum_probs=207.2
Q ss_pred HHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhcc
Q 000696 995 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLV 1074 (1349)
Q Consensus 995 LAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLg 1074 (1349)
.+..+...++..+.-+++.+.+-|+++++.-|..|.-+++.+. .....+.++..+.+.+.|++|.||+-|+-++.
T Consensus 65 ~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~ 139 (526)
T PF01602_consen 65 YLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALL 139 (526)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3455555566668888999999999999999999999999864 23555777788888889999999999999999
Q ss_pred CCcchhhhhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHH
Q 000696 1075 QIPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAF 1153 (1349)
Q Consensus 1075 nl~~~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~Lf 1153 (1349)
.+....-. ..+. +++.+...|.|.|..|+..|...+..+ ...++....++..+..++.....+.++-++...+.++
T Consensus 140 ~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l 216 (526)
T PF01602_consen 140 KIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLL 216 (526)
T ss_dssp HHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 88643111 1122 688888889999989999999999999 2222222255666666667666888999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCCCCCCChHHHHH
Q 000696 1154 GALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVR 1231 (1349)
Q Consensus 1154 G~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~ 1231 (1349)
+.++.. .....-. ...+.++.-.++..++.|+-.|-.++..+.+.-.. .....+.+..-..+..+.| +.-
T Consensus 217 ~~~~~~---~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~--~~L 288 (526)
T PF01602_consen 217 RRYAPM---EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRY--IAL 288 (526)
T ss_dssp TTSTSS---SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHH--HHH
T ss_pred HhcccC---ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchheh--hHH
Confidence 987752 2222211 23444444555588899999999999987765552 2222233321112222222 333
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHH
Q 000696 1232 DLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1310 (1349)
Q Consensus 1232 ~l~k~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~ 1310 (1349)
+....+.+.+|..+. ...-.+.+++ ++...||..|...+..++... ..+.++..|...+..=+|+.+|..
T Consensus 289 ~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--------n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 289 DSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES--------NVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp HHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHHC--HHHHHH
T ss_pred HHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc--------chhhHHHHHHHHHHhccchhhhhh
Confidence 444555556655555 4455566777 888999999987777665422 235577777774323348889999
Q ss_pred HHHHHHHHH-Hhccccccc
Q 000696 1311 CSSSLGWLL-KSINSHSWR 1328 (1349)
Q Consensus 1311 Aa~aL~~l~-k~~~~~~~~ 1328 (1349)
+..+++.+. ++.....|-
T Consensus 360 ~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 360 LIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHHHHHHHHGSSHHHH
T ss_pred HHHHHHHHHhccCchHHHH
Confidence 999999887 666555564
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.22 E-value=0.009 Score=73.52 Aligned_cols=299 Identities=17% Similarity=0.194 Sum_probs=196.8
Q ss_pred hhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC---hhcHHHHHHHHHHhhcCCCC
Q 000696 986 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDES 1062 (1349)
Q Consensus 986 e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~---~~~l~~~~i~~L~~~l~D~~ 1062 (1349)
..|-+-|. .+-.++.+-+ ..+++.-++--+++..+..|..++...+..+..-+. .+.+-+.++..++..++...
T Consensus 696 r~ykqlv~-ttv~ia~KvG--~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 696 RNYKQLVD-TTVEIAAKVG--SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred cchhhHHH-HHHHHHHHhC--chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 33444443 5555665544 346666677778889999999999888888876432 44555667777666665554
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC
Q 000696 1063 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1063 ~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe 1139 (1349)
..+- .-+.|+|.+... .+++|.+++...++..|..+...|+..|....+.|...+..-+-...+-++-.-|--..+
T Consensus 773 t~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 773 TEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG 851 (1172)
T ss_pred cchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence 4444 456788876543 678999999999999999988888888877766665544433333344444455566788
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCC
Q 000696 1140 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1219 (1349)
Q Consensus 1140 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~ 1219 (1349)
.|.++|=.+-+.+.-.+.++.+.....+ -+...|+.|.--|+..+..|...|-.-++.+|-. +
T Consensus 852 eeypEvLgsILgAikaI~nvigm~km~p---Pi~dllPrltPILknrheKVqen~IdLvg~Iadr--------------g 914 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGMTKMTP---PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR--------------G 914 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCC---ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc--------------C
Confidence 9999988876666666666544433333 2344555555566778888998887777766631 1
Q ss_pred CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhh-----c--------
Q 000696 1220 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILS-----L-------- 1286 (1349)
Q Consensus 1220 ~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~-----~-------- 1286 (1349)
. +..+..++++ ||=-| +..+||-...||+||+--.|++.+-..++.... +
T Consensus 915 p-E~v~aREWMR-IcfeL---------------lelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~R 977 (1172)
T KOG0213|consen 915 P-EYVSAREWMR-ICFEL---------------LELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNR 977 (1172)
T ss_pred c-ccCCHHHHHH-HHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhc
Confidence 1 2344566653 34323 447888899999999999999887665444311 0
Q ss_pred --------------cHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1287 --------------FYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1287 --------------~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
+.-.+..+|.. ==+-|+..|+.-.-.||++++.|..
T Consensus 978 vcTtvaIaIVaE~c~pFtVLPalmn-eYrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 978 VCTTVAIAIVAETCGPFTVLPALMN-EYRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhhhhhhhhhhhhcCchhhhHHHHh-hccCchhHHHHhHHHHHHHHHHHHH
Confidence 01113444444 2345999999999999999986653
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.19 E-value=0.00044 Score=86.46 Aligned_cols=299 Identities=20% Similarity=0.200 Sum_probs=192.9
Q ss_pred HhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---h-hhHHHHH
Q 000696 1014 LTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H-QYATQVL 1089 (1349)
Q Consensus 1014 L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v---~-~~~~~lL 1089 (1349)
++..|++.+..+=..++.++..++... ....+.......|..++.+|++.||.++++.++++..+.. . -....++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 444444443333334444566666532 2234467788999999999999999999999999875521 1 1225678
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh-HHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000696 1090 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1168 (1349)
Q Consensus 1090 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~-l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1168 (1349)
+.++.++.|.|..|.-.|+.+|.++...- .....+ --++...+..++...++.+|.-..+++..+++. ..+.+
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~----S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH----SPEAA 195 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc----CHHHH
Confidence 99999999999999999999999999753 222222 112256677888888999999999999999862 23444
Q ss_pred HHHHHhhhhHHHHh-ccCCChhHHHHHHHHHHhhhhh------hhh-----hhhhhhccccCCC-CCCCChHHHHHHHHH
Q 000696 1169 LEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPF------MEI-----GVYGIFNSHCFNS-DHRSDYETFVRDLTR 1235 (1349)
Q Consensus 1169 ~eQv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~l------L~~-----~l~~lf~~~~~~~-~~~l~~~~f~~~l~k 1235 (1349)
..-+-.++.+.++. |.|+|.-|...|-..|...|.. |.- ++..++....-.+ ...+...-+++-+++
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 33344456666555 8888888999999999888742 111 1222222211001 011222223333333
Q ss_pred HHHHhCc----chHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhh-h---ccHHHHHHHHHHHhccCCChhH
Q 000696 1236 QFVQHFP----SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL-S---LFYTQVFGLLVVKLSQSADAIV 1307 (1349)
Q Consensus 1236 ~L~~~~~----~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~-~---~~~e~l~~~L~~~Ll~Dpdp~V 1307 (1349)
... ..| +.+..|+......+.|..+.++..|.--+|.++....-...- . ...+.+.++.-. ..+.....+
T Consensus 276 la~-~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~-~~~~~~~~l 353 (503)
T PF10508_consen 276 LAR-VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD-AIKSGSTEL 353 (503)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH-HhcCCchHH
Confidence 222 122 233456666667889999999999999999988655522221 1 123445555555 466788899
Q ss_pred HHHHHHHHHHHHHh
Q 000696 1308 RATCSSSLGWLLKS 1321 (1349)
Q Consensus 1308 R~~Aa~aL~~l~k~ 1321 (1349)
|.++-.||+.+...
T Consensus 354 k~r~l~al~~il~~ 367 (503)
T PF10508_consen 354 KLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999743
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0038 Score=82.25 Aligned_cols=323 Identities=11% Similarity=0.107 Sum_probs=218.6
Q ss_pred HHHHHHHHHHhhcchHHH-HHHHh---cCCCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHH
Q 000696 956 ILTSFQAFCECVGDLEMR-KILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1031 (1349)
Q Consensus 956 aleAlk~ll~~~g~~~~~-~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a 1031 (1349)
+..-|-+|-+-.|.-+++ ++|+. +--|++..+.--|.+.||.---+...|+++.++--|+.|--+|+...+-+=+-
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTS 1020 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHH
Confidence 444555555566666654 66665 34799888877888877765445555666666666666655555444433333
Q ss_pred HHHHhhhcCC-ChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChh---H
Q 000696 1032 ALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDES---V 1103 (1349)
Q Consensus 1032 f~sELl~~~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~---V 1103 (1349)
+---|+..+. .-......+..-|.-.+.+-.-.||..|.-+|..+..+ ++....+.+..++...+||-.+. +
T Consensus 1021 IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1021 IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344554331 12233345677778888889999999999999988654 67777888999999999986555 4
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCC-----ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhH
Q 000696 1104 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1178 (1349)
Q Consensus 1104 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede-----~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp 1178 (1349)
.-.+..+|+++.-++..-+-+.---.+.--+.||.=|+ -.+||..||...-+|+++.++..+.. ..-|+|
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-----~~~LIp 1175 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-----FPKLIP 1175 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-----hhHHHH
Confidence 45677888888776654433333334444556776654 48999999999999999766544333 256777
Q ss_pred HHHhccCC-ChhHH-----------HHH--------------HHHHHhhhhhhhh-hhhhhhccc------cCCCCCCCC
Q 000696 1179 LILHIYDD-DLSVR-----------QAC--------------RNTLKQVAPFMEI-GVYGIFNSH------CFNSDHRSD 1225 (1349)
Q Consensus 1179 LLlHL~D~-~~~V~-----------~ac--------------k~tL~~~a~lL~~-~l~~lf~~~------~~~~~~~l~ 1225 (1349)
+++..-++ +|.|- +++ -.|+..|-+.+.. .+.++.-+- -.+-+-+..
T Consensus 1176 ~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg 1255 (1702)
T KOG0915|consen 1176 LLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVG 1255 (1702)
T ss_pred HHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 77777776 33443 111 2456666666655 444433221 122223445
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhh
Q 000696 1226 YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1283 (1349)
Q Consensus 1226 ~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~ 1283 (1349)
...|+--+...+.++..-...-++..++.=+++-.+.+|++=+.-.|++.+...+++.
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 6788888888888888888899999999999999999999999999999998886554
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=0.0023 Score=81.90 Aligned_cols=294 Identities=16% Similarity=0.099 Sum_probs=200.4
Q ss_pred HhhhhcccCccchHHHHHH---HHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHH
Q 000696 1014 LTKSINRQQRFQREAAAAA---LSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVL 1089 (1349)
Q Consensus 1014 L~~~L~s~~~~~Ri~a~af---~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~~~~lL 1089 (1349)
..-.++..+...|.+++.- |.++++.+.-.......++..+..-..|+|+.||....-+..++..- ...+-.+.++
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~ll 439 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELL 439 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccC
Confidence 3344556666667666543 44444422112223344456666778999999999999888877543 2233346678
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHH
Q 000696 1090 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1169 (1349)
Q Consensus 1090 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~ 1169 (1349)
+..+..+.|.+..|++.....++.+....+..++....-++-..|-.+-+|-+..+|.+.+.-+=.++.- .....|.
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---~~~~~~~ 516 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---LGVEFFD 516 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh---hhhHHhh
Confidence 8999999988888999999888888888888887777666666667777777899999999888887751 1123333
Q ss_pred HHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhh--h-hhhhhhccccCCCCC-CCChHHHHHHHHHHHHHhCcc--
Q 000696 1170 EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPS-- 1243 (1349)
Q Consensus 1170 eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~--~-~l~~lf~~~~~~~~~-~l~~~~f~~~l~k~L~~~~~~-- 1243 (1349)
+. ++.+. ...+.|..-+++++|...|...+..+| | .......... .+++ ++-|+.-.-+-+..|..-+..
T Consensus 517 ~~-~~~l~--~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~-~~~q~~y~~R~t~l~si~~la~v~g~ei 592 (759)
T KOG0211|consen 517 EK-LAELL--RTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLA-MDLQDNYLVRMTTLFSIHELAEVLGQEI 592 (759)
T ss_pred HH-HHHHH--HhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHH-HhcCcccchhhHHHHHHHHHHHHhccHH
Confidence 33 22222 233778889999999999999999999 8 3333333221 1111 233333322333344443322
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1244 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1244 ~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
....|+.-.....++|-++||-+|+.+.=-++..+....+ .+.+..+++. |.+|+|..||-+|..|++.+.
T Consensus 593 ~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~-L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 593 TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET-LSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH-hccCcccchhHHHHHHHHHHH
Confidence 2344566666688899999999999999888888775443 3789999999 899999999999999988765
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.026 Score=70.29 Aligned_cols=527 Identities=16% Similarity=0.168 Sum_probs=261.5
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHH
Q 000696 747 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVL 826 (1349)
Q Consensus 747 ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~ll 826 (1349)
++..|+.+.+.....|++.+-.+= +.||...+-|+.+..+......-....+|++.+.+|--+.++-.++|+ ...
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA---~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl-~~~- 169 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIA---CIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL-EQQ- 169 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHH---HhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH-HHH-
Confidence 456678888888888888776653 456655567888888877666666667899999999888877666644 222
Q ss_pred hhhcccchhhhhccccCCCCchhHHHHhhcCcccHH--HHHHHHHHHHc---cCCCccCCCccCCCCCC----CCCCCcc
Q 000696 827 ATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSF--LFLEHLISALN---QTPFVKGDMEKGDYSSH----SADTWID 897 (1349)
Q Consensus 827 ~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~--~vL~~LL~~L~---~~p~~~e~~~~~~~~~~----~~~~~~~ 897 (1349)
..+++|.= ..++.+- +++... --+.-|+.-|. .+.-++. .+++-.. .|.....
T Consensus 170 ---sN~iLtaI---v~gmrk~---------e~s~~vRLaa~~aL~nsLef~~~nF~~E~---ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 170 ---SNDILTAI---VQGMRKE---------ETSAAVRLAALNALYNSLEFTKANFNNEM---ERNYIMQVVCEATQSPDE 231 (859)
T ss_pred ---HhHHHHHH---Hhhcccc---------CCchhHHHHHHHHHHHHHHHHHHhhccHh---hhceeeeeeeecccCCcH
Confidence 01111110 0112221 111111 11223333222 1111111 1111111 1111111
Q ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC---------CC-----------------CCCCC
Q 000696 898 DDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL---------AS-----------------SGQHE 951 (1349)
Q Consensus 898 ~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~---------~~-----------------~~~~~ 951 (1349)
-+-.||..-|.-+... |-+-++.+.-+=+.++-+.--++-+- +. .+...
T Consensus 232 -~i~~aa~~ClvkIm~L----yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 232 -EIQVAAFQCLVKIMSL----YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1223444444443331 22222222222111121111111000 00 01222
Q ss_pred h--HHHHHHHHHHHHHhhcchHHHHHHHhcC------CCCChhhHHHHHH--HHHHHhhhcCchhHHHHHHHHhhhhccc
Q 000696 952 P--LRAILTSFQAFCECVGDLEMRKILARDG------EQNDKEKWINLIG--DVAGCVSIKRPKEVQTICLILTKSINRQ 1021 (1349)
Q Consensus 952 P--~~~aleAlk~ll~~~g~~~~~~~L~~~g------~W~~~e~~~~gV~--lLAr~m~~~~~~~~~~i~~~L~~~L~s~ 1021 (1349)
| ..++..|++.++ -...+.|.+++ .|+-.. --|+. +.|+++ ....++.++.++-..++++
T Consensus 307 p~~~~fa~~a~~~v~-----P~Ll~~L~kqde~~d~DdWnp~k--AAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 307 PSSKYFARQALQDVV-----PVLLELLTKQDEDDDDDDWNPAK--AAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNP 376 (859)
T ss_pred chhhHHHHHHHhHhh-----HHHHHHHHhCCCCcccccCcHHH--HHHHHHHHHHHHh---cccchhhhHHHHHHhcCCc
Confidence 4 235666665433 12334455532 465111 12332 344432 2336788888888899999
Q ss_pred CccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHh
Q 000696 1022 QRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILA 1094 (1349)
Q Consensus 1022 ~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-----~v~~~~~~lL~all~ 1094 (1349)
+=++|-+|+-.|.-.+..|.. ........+..+.+-..||+-.||.-+.--+|.++.+ --..|-+.++++++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 999998888777777776543 2233456777778888899999999999999988754 123466889999999
Q ss_pred hccCCChhHHHHHHHHHHHHhccCCcCC--------cchhHHhHHhhhcCcC---CCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1095 LLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ---VSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1095 ~L~d~d~~V~leAm~~L~~lL~~l~~~~--------~~~~l~~i~~~lrpff---ede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
||.| ..+|...+=.++-.+.+...+.. ..+++..|...|-.-= +-....+|.+|++.+|++++++...
T Consensus 457 gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 457 GLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred Hhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 9987 34454443333333332222222 2234444444442211 2255789999999999999977654
Q ss_pred chHHHHHH-------HHhhhhHHHHhccCCCh-hHHHH--H---HHHHHhhhhhhh-h--hhhhhhccccCCCCC-CCCh
Q 000696 1164 QREAFLEQ-------IHAMLPRLILHIYDDDL-SVRQA--C---RNTLKQVAPFME-I--GVYGIFNSHCFNSDH-RSDY 1226 (1349)
Q Consensus 1164 ~~~~~~eQ-------v~~~LvpLLlHL~D~~~-~V~~a--c---k~tL~~~a~lL~-~--~l~~lf~~~~~~~~~-~l~~ 1226 (1349)
..+...+- +.+++-.=.+-+.|... .+.+. | ...+++.++-.. . .+-.+|-+- ++..+ ..-.
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~ 614 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVH 614 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HcCCccccch
Confidence 43332222 22222222222222211 01110 0 011111111000 0 011111110 11101 1111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhc----CC-ChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000696 1227 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE----AP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1301 (1349)
Q Consensus 1227 ~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylk----S~-~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1301 (1349)
++.+..+ ..|+.+....+..|+..-.+|+- +- ...+-.+|+=++|-+...+.++.+ ++.+.+...|.. .++
T Consensus 615 e~a~laV-~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~--py~d~~mt~Lvq-~Ls 690 (859)
T KOG1241|consen 615 EEAFLAV-STLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL--PYCDELMTVLVQ-CLS 690 (859)
T ss_pred HHHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHH-Hcc
Confidence 2222232 23455555555555555555542 22 245888999999988888876665 445677777776 565
Q ss_pred CCC-------hhHHHHHHHHHHH
Q 000696 1302 SAD-------AIVRATCSSSLGW 1317 (1349)
Q Consensus 1302 Dpd-------p~VR~~Aa~aL~~ 1317 (1349)
.|. +...++.-.||..
T Consensus 691 s~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 691 SPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred CccccccccchHHHHHHHHHHHH
Confidence 443 3445566665543
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00019 Score=87.02 Aligned_cols=292 Identities=17% Similarity=0.169 Sum_probs=183.5
Q ss_pred HHHHhhhhcccCccchHHHHHHHHHhhhcCC---ChhcHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhh---hh
Q 000696 1011 CLILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHI---HQ 1083 (1349)
Q Consensus 1011 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~---~~~~l~~~~i~~L~~~l-~D~~~~VR~lslrGLgnl~~~~v---~~ 1083 (1349)
+..++-.+.|....++++++..|-.++.... .......-++..|-+.+ ++.+|.+|.-|.-.|-||+.+.- +.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4444555667777779999999998887532 22222223566666666 58889999999999999998611 11
Q ss_pred h-HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcCcC-CCCChHHHHHHHHHHHHhhcc
Q 000696 1084 Y-ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQ-VSMNVKMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1084 ~-~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--i~~~lrpff-ede~~~vR~aAi~LfG~L~~~ 1159 (1349)
. -...++.++..+...++.|.-.|+.+|++|..... ..+.+.++ +..-|-.++ .+....+...+.-++..|++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc-
Confidence 1 13457788999999999999999999999987532 22222211 111112233 33334677777777778776
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhh----------hh--hhhhhhccccCCCCCCCChH
Q 000696 1160 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM----------EI--GVYGIFNSHCFNSDHRSDYE 1227 (1349)
Q Consensus 1160 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL----------~~--~l~~lf~~~~~~~~~~l~~~ 1227 (1349)
|+...|=.++|...|+-|..+++..|++|..-+-.|+.-++--. |. .+.+++.... ....-+
T Consensus 225 --gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~----~~v~~P 298 (514)
T KOG0166|consen 225 --GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS----PKVVTP 298 (514)
T ss_pred --CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC----cccccH
Confidence 55455556888999999999999999999987777777655211 11 2222222210 000000
Q ss_pred HHHHHH---------HHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHH
Q 000696 1228 TFVRDL---------TRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1297 (1349)
Q Consensus 1228 ~f~~~l---------~k~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~ 1297 (1349)
.++.+ -...+-. .-.+......+. ||-..||..|+|+++.+.-.. .++..++=...++..|..
T Consensus 299 -aLRaiGNIvtG~d~QTq~vi~-----~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~-~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 299 -ALRAIGNIVTGSDEQTQVVIN-----SGALPVLSNLLSSSPKESIKKEACWTISNITAGN-QEQIQAVIDANLIPVLIN 371 (514)
T ss_pred -HHhhccceeeccHHHHHHHHh-----cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC-HHHHHHHHHcccHHHHHH
Confidence 00000 0011111 112333334455 778889999999999987733 345544433457888999
Q ss_pred HhccCCChhHHHHHHHHHHHHH
Q 000696 1298 KLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1298 ~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+++.-|-..|+.|+=|++.+-
T Consensus 372 -~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 372 -LLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred -HHhccchHHHHHHHHHHHhhc
Confidence 788888999999999987654
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.89 E-value=0.078 Score=64.54 Aligned_cols=293 Identities=16% Similarity=0.156 Sum_probs=188.9
Q ss_pred chhHHHHHHHHhhhhcccCccchHHHHH---HHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000696 1004 PKEVQTICLILTKSINRQQRFQREAAAA---ALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1079 (1349)
Q Consensus 1004 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~a---f~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~- 1079 (1349)
-|+++.|++..+..|+++....|+-|+- .++-.|+.|... ..+..+-+.|.+.+....|.|-.-.|.++-.|-+.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 4799999999999999999999988874 455556666553 44566788999999999999999988888777532
Q ss_pred ---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHh
Q 000696 1080 ---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1156 (1349)
Q Consensus 1080 ---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1156 (1349)
++..-...+||.+..-|..+...|+...+.-++.|-...++..-..--..||+-|-..+-.-+-++|.+|..-||-+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 45556678899999999988899999999999999887766444445567888888788888999999999999999
Q ss_pred hccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCCCCCCChHHHHHHHH
Q 000696 1157 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLT 1234 (1349)
Q Consensus 1157 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~l~ 1234 (1349)
++.. |++ ..|+.|+-.|+-++-+-+.-..-|...+|..-+. .+..+.... -..+-....+ .++.+|
T Consensus 758 s~ai-GPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY-~TPe~nVQnG-vLkam~ 825 (975)
T COG5181 758 SRAI-GPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDY-ETPEANVQNG-VLKAMC 825 (975)
T ss_pred Hhhc-CHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcc-cCchhHHHHh-HHHHHH
Confidence 9843 332 3566677666555544444334444444433333 233333321 0011001111 223332
Q ss_pred H---HHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhc----cCCChhH
Q 000696 1235 R---QFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QSADAIV 1307 (1349)
Q Consensus 1235 k---~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll----~Dpdp~V 1307 (1349)
- +..+...+.+....--.-..+-+..+.-|+.|+-.|-.+.-+-+ ..+.|+..=.|.. |+ -||.|.|
T Consensus 826 fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-----gtg~eda~IHLlN-llwpNIle~sPhv 899 (975)
T COG5181 826 FMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-----GTGDEDAAIHLLN-LLWPNILEPSPHV 899 (975)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHH-HhhhhccCCCcHH
Confidence 2 22222222222222222225566778889999999988765533 1223444444444 33 3788888
Q ss_pred HHHHHHHH
Q 000696 1308 RATCSSSL 1315 (1349)
Q Consensus 1308 R~~Aa~aL 1315 (1349)
...--+.+
T Consensus 900 i~~~~Eg~ 907 (975)
T COG5181 900 IQSFDEGM 907 (975)
T ss_pred HHHHHHHH
Confidence 77655543
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.011 Score=72.43 Aligned_cols=518 Identities=13% Similarity=0.093 Sum_probs=292.3
Q ss_pred HhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHH
Q 000696 653 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVS 729 (1349)
Q Consensus 653 ~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~---~i~~ 729 (1349)
.++|.=.|+...+|..-.++-...++-..- +. ...+..+.+ +.+.+.. . ..+.+ -.--
T Consensus 21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~-------------~~-v~~l~~~~~--~~l~~~~-~--~~~~~~~~v~~~ 81 (569)
T KOG1242|consen 21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGD-------------QN-VLNLKPCFE--QRLNSLH-N--DNLRNNVVVLEG 81 (569)
T ss_pred eecccCCCcchhhHHhHHHHHHHHHHhhhH-------------HH-HHHHHHHHH--HHhccch-h--HHHhhhhHHHHH
Confidence 344555999999999988887665444211 00 112222221 1222211 0 11111 1122
Q ss_pred HHHccCChhH--HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHH
Q 000696 730 SVCILLTKDE--LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLG 807 (1349)
Q Consensus 730 ~i~~~L~~~e--l~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ 807 (1349)
+.++++...+ ...++.-+++.+.-|.++...+.+.-|....-.-. .++.......+...+. .+.-..|.++-.
T Consensus 82 ~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~-~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 82 TLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLT-STKIAERAGAAY 156 (569)
T ss_pred HHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhc-cccHHHHhhhhH
Confidence 3444554333 34577888899998888777776665555442211 1223344444444344 555555666666
Q ss_pred HHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCC
Q 000696 808 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDY 887 (1349)
Q Consensus 808 ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~ 887 (1349)
++..+......+ .+ --..++..|-...+.+..+.-
T Consensus 157 ~~ag~v~g~~i~----~~----------------------------------~~~~~l~~l~~ai~dk~~~~~------- 191 (569)
T KOG1242|consen 157 GLAGLVNGLGIE----SL----------------------------------KEFGFLDNLSKAIIDKKSALN------- 191 (569)
T ss_pred HHHHHHcCcHHh----hh----------------------------------hhhhHHHHHHHHhcccchhhc-------
Confidence 655555544331 11 011334444443333322211
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhh
Q 000696 888 SSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECV 967 (1349)
Q Consensus 888 ~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~ 967 (1349)
+. ..+-|..+.+..+- + ...+-+...+|.+|... |--. +.++ ..+.+|.|+++.|.
T Consensus 192 -------re---~~~~a~~~~~~~Lg-~--~~EPyiv~~lp~il~~~----~d~~-----~~Vr--~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 192 -------RE---AALLAFEAAQGNLG-P--PFEPYIVPILPSILTNF----GDKI-----NKVR--EAAVEAAKAIMRCL 247 (569)
T ss_pred -------HH---HHHHHHHHHHHhcC-C--CCCchHHhhHHHHHHHh----hccc-----hhhh--HHHHHHHHHHHHhc
Confidence 11 11222223232222 2 45566777888877644 1111 1122 26888999999998
Q ss_pred cchHHHHHHHh------cCCCCChhhHHHHHHHHHHHhhhcCch----hHHHHHHHHhhhhcccCccchHHHHHHHHHhh
Q 000696 968 GDLEMRKILAR------DGEQNDKEKWINLIGDVAGCVSIKRPK----EVQTICLILTKSINRQQRFQREAAAAALSEFV 1037 (1349)
Q Consensus 968 g~~~~~~~L~~------~g~W~~~e~~~~gV~lLAr~m~~~~~~----~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl 1037 (1349)
-...+-..+-- ...|.++..-.++++ +|+.+.+. .++.++--+...|.++....|-++...+..+-
T Consensus 248 ~~~aVK~llpsll~~l~~~kWrtK~aslellg----~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 248 SAYAVKLLLPSLLGSLLEAKWRTKMASLELLG----AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH----HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 77666433221 126887766666555 55555554 45566666666677777777877777666653
Q ss_pred hcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hh-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000696 1038 RYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1349)
Q Consensus 1038 ~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1115 (1349)
. ......+...+..|.+.+.||+..+. -|+++||.-... .| ..-..-+.+-+-.||.+.+...--.+.....+.-
T Consensus 324 s--vidN~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 324 S--VIDNPDIQKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred H--hhccHHHHHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 2 12223367789999999999997776 477888866432 11 1223456777888888877777677777777777
Q ss_pred ccC-CcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc-CCChhHH-H
Q 000696 1116 KSS-SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY-DDDLSVR-Q 1192 (1349)
Q Consensus 1116 ~~l-~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~-D~~~~V~-~ 1192 (1349)
... +.+.+.+++..|...++.-+.|--+++|+.|-+.+|.+.+-.+. +-+..++|.+.|.- ++...|- .
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~--------~~f~d~~p~l~e~~~~~k~~~~~~ 472 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE--------VSFDDLIPELSETLTSEKSLVDRS 472 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh--------hcccccccHHHHhhccchhhhhhH
Confidence 766 67889999999999999999999999999999999999973221 11246677777754 2222221 1
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 000696 1193 ACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS 1272 (1349)
Q Consensus 1193 ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG 1272 (1349)
.+...+.. +... .+.+ .+++.+..+.+ .+ -..-.|+++|-.=++|++
T Consensus 473 g~aq~l~e-----------vl~~--~~v~---~~~~~~~~~~a---------------~~--~~~~~~~~~~dg~~~~~~ 519 (569)
T KOG1242|consen 473 GAAQDLSE-----------VLAG--LGVE---KVEDILPEILA---------------NA--SSVLIDERIRDGVIWLFY 519 (569)
T ss_pred HHhhhHHH-----------HHhc--ccch---HHHHHHHHHHH---------------HH--hhccchhhhccCeeehhh
Confidence 11122222 2221 1110 11222222211 11 123457778888888888
Q ss_pred hhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000696 1273 SILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1314 (1349)
Q Consensus 1273 ~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1314 (1349)
++-...+.+... +.-+++..+.. =+-|.|+.+|..+-++
T Consensus 520 ~lp~~~~~~~~~--yi~~i~~~~~k-~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 520 LLPYIFGFQFQP--YIHEILDEFLK-GLADNDEKGRDTALEA 558 (569)
T ss_pred ccchhhhHHhHH--HHHHHHHHHHH-HhhhcCCccccchhhh
Confidence 776555555543 33555665555 3558999999887766
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.75 E-value=0.00033 Score=78.32 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=116.2
Q ss_pred CChhHHHHHHHHHHHHhccC-CcCCcchhH---HhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 000696 1099 LDESVQLTAVSCLLTILKSS-SKDAVEPIL---LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1174 (1349)
Q Consensus 1099 ~d~~V~leAm~~L~~lL~~l-~~~~~~~~l---~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1174 (1349)
.|=..+.+|+..|..++..- .......+. -.+...+-....|.|..|-..|..+++.++... ...|...+-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l----~~~~~~~~~~ 94 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL----GSHFEPYADI 94 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH----GGGGHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----hHhHHHHHHH
Confidence 34468899999999998765 122222222 223345567888999999999999999999743 2336666777
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000696 1175 MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1254 (1349)
Q Consensus 1175 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ 1254 (1349)
.+++|+-.+.|.+..|++++..||..+....+. ....+ ..-...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------------------~~~~~------------------~~~l~~ 138 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY------------------SPKIL------------------LEILSQ 138 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------------------HHH------------------HHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------------------HHHHH------------------HHHHHH
Confidence 888999999999999999999999886643110 00110 111233
Q ss_pred hhcCCChhHHHHHHHHHHhhhccCc--hhhh-hhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1255 AFEAPWPIIQANAIYFSSSILCLCD--DQHI-LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1255 ylkS~~~~IR~~A~~fiG~l~~~~~--~~~~-~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
..++..+.+|..++.++..++...+ .... .....+.+.+.+.. ++.|++|.||..|.+++..+.+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999988777 2222 12234778999999 89999999999999999888643
No 28
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.73 E-value=0.0014 Score=79.26 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=93.8
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh
Q 000696 1048 EQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1126 (1349)
Q Consensus 1048 ~~~i~~L~~~l-~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~ 1126 (1349)
+..+..|...+ .|+++.|+..+..++..... +..+++++..|+|.++.|..++..+|+.+-. ....
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a~-- 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----RQAE-- 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHHH--
Confidence 34567788888 68899999999999875543 3348899999999999999999999997543 2223
Q ss_pred HHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhh
Q 000696 1127 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1203 (1349)
Q Consensus 1127 l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1203 (1349)
..|.+.++++++.||.+++.+.|.-.. . ...+|+-.|+|+++.|+.++-.+|+.+..
T Consensus 120 -----~~L~~~L~~~~p~vR~aal~al~~r~~-----~----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 120 -----PWLEPLLAASEPPGRAIGLAALGAHRH-----D----------PGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred -----HHHHHHhcCCChHHHHHHHHHHHhhcc-----C----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 234567899999999999988887211 1 23456666789999999999999988653
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=97.73 E-value=0.01 Score=76.79 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=132.6
Q ss_pred HHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhh
Q 000696 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQ 1083 (1349)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~ 1083 (1349)
++.++..+.+.+.+.+.-.|.+|+..+..+.+.... .......++.|.+-+.|+||.|..-|+..|-.+... .. .
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 344444444555555555555555555554332111 011122445555555555555555555555544321 01 0
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1084 ~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
.....+..++..+.+.++-.....+..|.+-- ..+ ..-...+..++.|.+.+.|+.|-.+|+.+|=.+....
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~----P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--- 287 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQR----PSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--- 287 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----CCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---
Confidence 11222333444444444433333333333211 111 2223466777788888999999999999999887643
Q ss_pred chHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhh----hhhhhhhhhhccccCCCCCCCCh-HHHHHHHHHHHH
Q 000696 1164 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP----FMEIGVYGIFNSHCFNSDHRSDY-ETFVRDLTRQFV 1238 (1349)
Q Consensus 1164 ~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~----lL~~~l~~lf~~~~~~~~~~l~~-~~f~~~l~k~L~ 1238 (1349)
...+.+++..-+.+.++-|...+++|+-.+=..+..+.. ++.-.+...|.+. .| . .| ...--++ ...
T Consensus 288 -~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~--~D-p--~yIK~~KLeI--L~~ 359 (746)
T PTZ00429 288 -SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY--SD-P--PFVKLEKLRL--LLK 359 (746)
T ss_pred -CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc--CC-c--HHHHHHHHHH--HHH
Confidence 134566666545333333444556665444333333221 2222333334432 22 1 12 1111111 122
Q ss_pred HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc
Q 000696 1239 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1239 ~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
--.++.+...+.....|..+....+++.|+.-||.+....+
T Consensus 360 Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 360 LVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 33577888889999999999999999999999998876655
No 30
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.021 Score=71.23 Aligned_cols=248 Identities=16% Similarity=0.140 Sum_probs=163.2
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1130 (1349)
++.+.+.++|||+.+|..|||.|+.|-.. ...|.+|-|+-.+-.|...-|+-.|..++-|+-. ++...-. . +
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~-q---L 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD-Q---L 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH-H---H
Confidence 78999999999999999999999988643 3357778888888888888899999999999754 3433322 3 3
Q ss_pred HhhhcCcCCCCChHHHHHHHHHHHHhhcc------------CC-----Ccc-----------------h-----------
Q 000696 1131 SVRLRNLQVSMNVKMRRNAFAAFGALSNF------------GV-----GSQ-----------------R----------- 1165 (1349)
Q Consensus 1131 ~~~lrpffede~~~vR~aAi~LfG~L~~~------------~~-----~~~-----------------~----------- 1165 (1349)
-.-|..++.|-++.|=.+|..+|-.++.- |. ..| .
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 34456778899999999998888766531 00 000 0
Q ss_pred --------------------HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hh-hhhhccccCCCCCC
Q 000696 1166 --------------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV-YGIFNSHCFNSDHR 1223 (1349)
Q Consensus 1166 --------------------~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l-~~lf~~~~~~~~~~ 1223 (1349)
++=..-++++.-||+ +-.|+.|+.||..++.++||..+. ++ +++++. +.+.+.
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl---~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL--Lrs~~~ 336 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL---QSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL--LRSNRE 336 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHH---hcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH--HhcCCc
Confidence 000122445555554 467899999999999999998777 44 444442 222222
Q ss_pred CChHHHHHH------------------------------HHHHHH---HhCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 000696 1224 SDYETFVRD------------------------------LTRQFV---QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYF 1270 (1349)
Q Consensus 1224 l~~~~f~~~------------------------------l~k~L~---~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~f 1270 (1349)
..| ..+.. ++|.=+ --+-..+...+.....|.+|+...+=++|+.-
T Consensus 337 vqy-vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~A 415 (968)
T KOG1060|consen 337 VQY-VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKA 415 (968)
T ss_pred chh-hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 222 11111 111100 11245566777788889999999888999999
Q ss_pred HHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1271 SSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1271 iG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
||-..+....- .+...+.|.. |++..|..|-+.|.-.+..|.
T Consensus 416 iGrCA~~~~sv------~~tCL~gLv~-Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 416 IGRCASRIGSV------TDTCLNGLVQ-LLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHhhCch------hhHHHHHHHH-HHhcccchhHHHHHHHHHHHH
Confidence 99776654311 1445666777 666677777666665555443
No 31
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.56 E-value=0.0013 Score=77.97 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=86.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000696 1049 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1128 (1349)
Q Consensus 1049 ~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1128 (1349)
..+..+.+.+.|+++.||..+..-+|.++. +..++.+...+.|.+..|+..|..+|+++-.. . ..+.++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~-a~~~li 111 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---E-AVPPLV 111 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---h-HHHHHH
Confidence 356677788899999999999999999886 66788999999999999999999988887643 2 222332
Q ss_pred hHHhhhcCcCC-CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000696 1129 NLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1190 (1349)
Q Consensus 1129 ~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1190 (1349)
.+++ |++..||..|...+|.+.. . +.+.||+-.++|+...+
T Consensus 112 -------~~l~~d~~~~vR~~aa~aL~~~~~-----~---------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 112 -------ELLENDENEGVRAAAARALGKLGD-----E---------RALDPLLEALQDEDSGS 153 (335)
T ss_pred -------HHHHcCCcHhHHHHHHHHHHhcCc-----h---------hhhHHHHHHhccchhhh
Confidence 3344 8999999999999999764 1 34788999999988555
No 32
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0016 Score=79.26 Aligned_cols=272 Identities=17% Similarity=0.141 Sum_probs=191.1
Q ss_pred HhhhhcccCccchHHHHHHHHHhhhcCCC-hhcHHHH-HHHHHHhhcCCCCh-hHHHHHhhhccCCcchhh----hhhHH
Q 000696 1014 LTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESP-TVRGLCLRGLVQIPSIHI----HQYAT 1086 (1349)
Q Consensus 1014 L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~-~VR~lslrGLgnl~~~~v----~~~~~ 1086 (1349)
++..++|+++.-+--|++.+.-....+.. ...+++. ++..|+.-+..+.+ .+.+-+.-.|.|+-.+|- -....
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 77888899999999999999988775433 3344444 66777777777776 444455567777755421 12246
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchH
Q 000696 1087 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1166 (1349)
Q Consensus 1087 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1166 (1349)
.+|+++...++..|+.|...|..+++-+.+...+..---+-..++.++-+++++....++..|.+..|.++. |.+
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d-- 311 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---GSD-- 311 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---ccH--
Confidence 789999999999999999999999999987655443223344577788889999999999999999999765 333
Q ss_pred HHHHHH-HhhhhHHHHhccC--CChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000696 1167 AFLEQI-HAMLPRLILHIYD--DDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1241 (1349)
Q Consensus 1167 ~~~eQv-~~~LvpLLlHL~D--~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~ 1241 (1349)
...+.| -...+|-+.+|-- +...+++.|-+|+..++. |. .+.+++...
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~------------------------- 364 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN------------------------- 364 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc-------------------------
Confidence 222222 2455555555444 334478877788877765 33 444444321
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1242 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1242 ~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
++...+.-+++..-.+|..|+|.|+.+......++...+-..-+++.|-. |+.=+|+.+-..+-.||+.+.+.
T Consensus 365 ------l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd-lL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 365 ------LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD-LLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred ------cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh-cccCCChHHHHHHHHHHHHHHHH
Confidence 11222334555667899999999998888777777665533447888999 77778888888899999999876
Q ss_pred ccc
Q 000696 1322 INS 1324 (1349)
Q Consensus 1322 ~~~ 1324 (1349)
...
T Consensus 438 ~e~ 440 (514)
T KOG0166|consen 438 GEA 440 (514)
T ss_pred HHH
Confidence 543
No 33
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.51 E-value=0.0037 Score=74.12 Aligned_cols=271 Identities=21% Similarity=0.183 Sum_probs=171.5
Q ss_pred HHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000696 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1087 (1349)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~ 1087 (1349)
+.....+...+.++....|..|+..+.++- .+..+..|.+.+.|+++.||..++.+||++.. +.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 467788888888887777877776655531 14456688888999999999999999999986 45
Q ss_pred HHHHHHhhcc-CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh----cCcCCCCChHHHHHHHHHHHHhhccCCC
Q 000696 1088 VLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL----RNLQVSMNVKMRRNAFAAFGALSNFGVG 1162 (1349)
Q Consensus 1088 lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~l----rpffede~~~vR~aAi~LfG~L~~~~~~ 1162 (1349)
.++.++..+. |.+..|+..|..+|+++-..- .+.+++-.+.... -.-.++....+|.+|+..+|.+..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~---a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER---ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 5666777777 678889999999999987532 2222221110000 000011223789999999998764
Q ss_pred cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCc
Q 000696 1163 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP 1242 (1349)
Q Consensus 1163 ~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~ 1242 (1349)
. ....++.-++.|++..|+.++..+|+..+....+-...++.. .+++ .. ..- .....-|.....
T Consensus 179 -~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~--~~~~-~~--~vr-~~~~~~l~~~~~ 242 (335)
T COG1413 179 -P---------EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKA--LSDE-SL--EVR-KAALLALGEIGD 242 (335)
T ss_pred -h---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHH--hcCC-CH--HHH-HHHHHHhcccCc
Confidence 1 245677888999999999999999999887642311111111 1111 10 111 122233333333
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhc
Q 000696 1243 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1322 (1349)
Q Consensus 1243 ~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1322 (1349)
.. -......++++....++..+....| ..+...-...+.. ...|.+..+|..++.+++......
T Consensus 243 ~~---~~~~l~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 243 EE---AVDALAKALEDEDVILALLAAAALG------------ALDLAEAALPLLL-LLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ch---hHHHHHHHHhccchHHHHHHHHHhc------------ccCchhhHHHHHH-HhhcchhhHHHHHHHHHHhhcccc
Confidence 32 2333345777777777777665555 0111222333445 578899999999999999888777
Q ss_pred ccccccccccc
Q 000696 1323 NSHSWRSTRLE 1333 (1349)
Q Consensus 1323 ~~~~~~~~~~~ 1333 (1349)
...-|....-|
T Consensus 307 ~~~a~~~~~~~ 317 (335)
T COG1413 307 AVAALLLALED 317 (335)
T ss_pred hHHHHHHHhcC
Confidence 66666544433
No 34
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.47 E-value=0.023 Score=68.94 Aligned_cols=353 Identities=14% Similarity=0.125 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhc----CCCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHH
Q 000696 955 AILTSFQAFCECVGDLEMRKILARD----GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA 1030 (1349)
Q Consensus 955 ~aleAlk~ll~~~g~~~~~~~L~~~----g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~ 1030 (1349)
.+--|+-.+-...|-.++.-.++.- ..|+...|-+.-++.++--+-...-+|+.+++..+...|.+..-..|+.++
T Consensus 300 vt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA 379 (975)
T COG5181 300 VTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTA 379 (975)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhH
Confidence 3444666677778888888888752 268755555555554444443445579999999999999999999999988
Q ss_pred HHHHHhhhcC-CChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc--------hhh--------------------
Q 000696 1031 AALSEFVRYS-GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS--------IHI-------------------- 1081 (1349)
Q Consensus 1031 af~sELl~~~-~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~--------~~v-------------------- 1081 (1349)
-.+|-+-... .-.-...+.++.-|-++.+..-..+=..-|++.|.|-+ |.-
T Consensus 380 ~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk 459 (975)
T COG5181 380 NALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKK 459 (975)
T ss_pred hHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcch
Confidence 7766554421 11223445566667676666555556666777776521 111
Q ss_pred -----------------hhhHHHHHHHHHhhccCC----C---hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000696 1082 -----------------HQYATQVLSVILALLDDL----D---ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1349)
Q Consensus 1082 -----------------~~~~~~lL~all~~L~d~----d---~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1137 (1349)
..|..++.+-+.+.+... | -.++..+-..|++-+.. ..+..++...
T Consensus 460 ~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~----------~~v~~kil~~ 529 (975)
T COG5181 460 DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD----------PRVSRKILEY 529 (975)
T ss_pred hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC----------hHHHHHHHhh
Confidence 122222333222222211 0 01222333333333321 2455667788
Q ss_pred CCCCChHHHHHHHH----HHHHhhccCCCc---------chHHHHHH-------------------------HHhhhhHH
Q 000696 1138 QVSMNVKMRRNAFA----AFGALSNFGVGS---------QREAFLEQ-------------------------IHAMLPRL 1179 (1349)
Q Consensus 1138 fede~~~vR~aAi~----LfG~L~~~~~~~---------~~~~~~eQ-------------------------v~~~LvpL 1179 (1349)
|.||.+.-|..+.. .||.|...+-+. --.+|.|| .-..+-..
T Consensus 530 ~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivSti 609 (975)
T COG5181 530 YSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTI 609 (975)
T ss_pred ccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHH
Confidence 99999888887764 466666533221 12345555 11222345
Q ss_pred HHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccc--cCCCCCCCChHHHH----HHHHHHHHHhC----cchHHHH
Q 000696 1180 ILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFV----RDLTRQFVQHF----PSRIDSY 1248 (1349)
Q Consensus 1180 LlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~--~~~~~~~l~~~~f~----~~l~k~L~~~~----~~~~~~~ 1248 (1349)
|-||+.+.|+|+..+..+...+++.|+. .=.+++.+. -+-+.-+=.|++.+ +.+|..-.... +--++..
T Consensus 610 L~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~i 689 (975)
T COG5181 610 LKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGI 689 (975)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhc
Confidence 7899999999999999999999998883 111111110 01111122355544 44444333222 2357778
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhcc-HHH--HHHHHHHHhccCCChhHHHHHHHHHHHHHHhc
Q 000696 1249 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF-YTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1322 (1349)
Q Consensus 1249 l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~-~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1322 (1349)
+-+..+-+++-+..|-.+-+-|+|.+..+.+. .++ .|| ++=.|.+ +++.-.-.+|+.|.+++|++-+..
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe----yi~~rEWMRIcfeLvd-~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPE----YIGVREWMRICFELVD-SLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcc----cCCHHHHHHHHHHHHH-HHHHhhHHHHHhhhhhhhhHHhhc
Confidence 88888899999999999999999999988873 122 244 4445788 788899999999999999987654
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.074 Score=65.44 Aligned_cols=515 Identities=15% Similarity=0.153 Sum_probs=302.1
Q ss_pred HHHHHHHHccCCh----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHH
Q 000696 725 NRIVSSVCILLTK----DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKH 800 (1349)
Q Consensus 725 ~~i~~~i~~~L~~----~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~ 800 (1349)
++|+...++.+.. .-+.-++-..++=...+++.-..-|..-+|+++-.+...+--. +..-++.++. +..-.++.
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFa-lanD~~~e 230 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFA-LANDEDPE 230 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHH-HccCCCHH
Confidence 4676666666654 3334455555666677777777888888999998887777322 5666677766 77888999
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccC
Q 000696 801 LRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKG 880 (1349)
Q Consensus 801 ~r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e 880 (1349)
+|+.+=+|+..|..-++++.+ .+| ..|+++.|.+-+ +
T Consensus 231 VRk~vC~alv~Llevr~dkl~-phl------------------------------------~~IveyML~~tq------d 267 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLV-PHL------------------------------------DNIVEYMLQRTQ------D 267 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcc-cch------------------------------------HHHHHHHHHHcc------C
Confidence 999999999999999988766 433 467777666411 1
Q ss_pred CCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC----C-CC--------
Q 000696 881 DMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL----A-SS-------- 947 (1349)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~----~-~~-------- 947 (1349)
. .. -+++-|--....+-..+ .++..++.+.++|.-.|+-.+-|.=.- . ..
T Consensus 268 -~-------------dE-~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 268 -V-------------DE-NVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred -c-------------ch-hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 0 01 13444443333333445 889999999999999998888773211 1 00
Q ss_pred -CCCChHHHHHHHHHHHHHhhcchH-HHHHHHh---cCCCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccC
Q 000696 948 -GQHEPLRAILTSFQAFCECVGDLE-MRKILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ 1022 (1349)
Q Consensus 948 -~~~~P~~~aleAlk~ll~~~g~~~-~~~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~ 1022 (1349)
+.+.|- ..-.-..+.-.....++ .....+. .+.|+=...---.+..||... ....++-++-++-..|.+..
T Consensus 331 eeDIkPR-fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 331 EEDIKPR-FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLPILLPLLKEHLSSEE 406 (885)
T ss_pred hhhccch-hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHHHHHHHHHHHcCcch
Confidence 234441 11000000000000111 1111111 135881111112233356532 23345555556666666644
Q ss_pred ccchHHHH---HHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhh
Q 000696 1023 RFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILAL 1095 (1349)
Q Consensus 1023 ~~~Ri~a~---af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~ 1095 (1349)
=..|-+++ +.++|=-.. +.-..+ -.++-.|.+-+.|-.|.||.+..=-|+.-+.. .-.+|...+|..++..
T Consensus 407 W~vrEagvLAlGAIAEGcM~-g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ 484 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQ-GFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRR 484 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhh-hcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHH
Confidence 44454444 444441111 111222 35678899999999999999998888866543 4457889999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCC---CChHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 000696 1096 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS---MNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1172 (1349)
Q Consensus 1096 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed---e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1172 (1349)
+-|.+..|.-.|-.+++.+-+..+.+ +.|++-.|..++--.|.+ .|--+=.-||..|.+-++ ..-.+....+
T Consensus 485 llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg--~~Ln~~~Yiq-- 559 (885)
T KOG2023|consen 485 LLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG--HALNKPAYIQ-- 559 (885)
T ss_pred HhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH--HhcCcHHHHH--
Confidence 99999999999999999998877644 456666666666444443 444455556655555332 2222333222
Q ss_pred HhhhhHHH---HhccCCChhH----------HHH--------HHHHHHhhhhhhhhhhhhhhccccCCCCC----CCChH
Q 000696 1173 HAMLPRLI---LHIYDDDLSV----------RQA--------CRNTLKQVAPFMEIGVYGIFNSHCFNSDH----RSDYE 1227 (1349)
Q Consensus 1173 ~~~LvpLL---lHL~D~~~~V----------~~a--------ck~tL~~~a~lL~~~l~~lf~~~~~~~~~----~l~~~ 1227 (1349)
-.++||+ --|.|+++++ ++| |..++.||..++.--+..+...+ ++.. .-+|-
T Consensus 560 -iLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~--~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 560 -ILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQ--QDPTVEAPDKDFI 636 (885)
T ss_pred -HhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhcc--CCccccCCCcceE
Confidence 2345554 5677777664 333 66677777777764222222221 1111 11111
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHH------HHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000696 1228 TFVRDLTRQFVQHFPSRIDSYMGST------IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1301 (1349)
Q Consensus 1228 ~f~~~l~k~L~~~~~~~~~~~l~~~------l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1301 (1349)
..-.|+..-|++-.++.+..++.++ +.-++++-+++|+.|--++|-+.+..++.-+. ..+..+..+.. .-
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p--~~~~fl~~lg~--Nl 712 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP--NLADFLPILGA--NL 712 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHhh--cC
Confidence 1223556666777777776665543 45789999999999999999888766433322 22444443332 22
Q ss_pred CCC-hhHHHHHHHHHHHHH
Q 000696 1302 SAD-AIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1302 Dpd-p~VR~~Aa~aL~~l~ 1319 (1349)
||+ -+|...|.-|+|.+-
T Consensus 713 ~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIA 731 (885)
T ss_pred ChhhchHHHHHHHHHHHHH
Confidence 333 456667888888764
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.49 Score=59.57 Aligned_cols=333 Identities=17% Similarity=0.237 Sum_probs=186.7
Q ss_pred HHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchH-------HHHHHHh--cCCCC--ChhhHH
Q 000696 921 KAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLE-------MRKILAR--DGEQN--DKEKWI 989 (1349)
Q Consensus 921 ~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~-------~~~~L~~--~g~W~--~~e~~~ 989 (1349)
+.+.+.+-.++.+. ++|.++.+.-+-.| +-|+++|..+-+... ..+++.. ...|. +.+--+
T Consensus 164 evl~~~sN~iLtaI------v~gmrk~e~s~~vR--Laa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~ 235 (859)
T KOG1241|consen 164 EVLEQQSNDILTAI------VQGMRKEETSAAVR--LAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQV 235 (859)
T ss_pred HHHHHHHhHHHHHH------HhhccccCCchhHH--HHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHH
Confidence 36667777766655 55666655443343 335555555433322 2222222 23466 333333
Q ss_pred HHHHHHHHHhhhcC---chhHH-HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhH
Q 000696 990 NLIGDVAGCVSIKR---PKEVQ-TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTV 1065 (1349)
Q Consensus 990 ~gV~lLAr~m~~~~---~~~~~-~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~V 1065 (1349)
-+.+=|.|-|.-|. .+++. +++..-+..++|+++..-+-|+-|-+-. |..+-.+....-..-..++. |.-
T Consensus 236 aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti---ceEEiD~~~e~~e~~d~~~~---p~~ 309 (859)
T KOG1241|consen 236 AAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI---CEEEIDLAIEYGEAVDQGLP---PSS 309 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCC---chh
Confidence 44445666665542 34443 4888888889988888888888775532 11110110000011111111 110
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC----h---hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000696 1066 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD----E---SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1138 (1349)
Q Consensus 1066 R~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d----~---~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1138 (1349)
...+ +.-.+.++|-+++.|...| + ++.+.|=.+|.-.-+..+++-+.+++ ||+
T Consensus 310 ~~fa------------~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl--------~Fi 369 (859)
T KOG1241|consen 310 KYFA------------RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL--------PFI 369 (859)
T ss_pred hHHH------------HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH--------HHH
Confidence 1111 1112345555555554422 2 27788888888887777766555443 555
Q ss_pred C----CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhh
Q 000696 1139 V----SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIF 1213 (1349)
Q Consensus 1139 e----de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf 1213 (1349)
+ +++..-|.+|+-.||.+.. |.+...++--|.+.++.++.-+.|++--|+..+..||++++-++-. -.++.
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~---gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~- 445 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILE---GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE- 445 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhc---CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh-
Confidence 4 7899999999999999986 6777778888888999999999999999999999999999976543 11111
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc----hh---hhhhc
Q 000696 1214 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD----DQ---HILSL 1286 (1349)
Q Consensus 1214 ~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~----~~---~~~~~ 1286 (1349)
-......+++ .-++ ..|++=.+++|-.-.+..... .. ...+.
T Consensus 446 ---------------~l~~~l~~l~---------------~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~ 494 (859)
T KOG1241|consen 446 ---------------LLQSKLSALL---------------EGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATP 494 (859)
T ss_pred ---------------hhhHHHHHHH---------------HHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccch
Confidence 0001111111 1222 134444445543333332111 01 01112
Q ss_pred cHHHHHHHHHHHhcc--C-CChhHHHHHHHHHHHHHHhcc
Q 000696 1287 FYTQVFGLLVVKLSQ--S-ADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1287 ~~e~l~~~L~~~Ll~--D-pdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
..+.+++.|.+ --. | .+...|..|=+||+.+.|+|-
T Consensus 495 ~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 495 FYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred hHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHcCc
Confidence 34666666666 332 3 568899999999999887764
No 37
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.33 E-value=0.87 Score=57.02 Aligned_cols=341 Identities=15% Similarity=0.196 Sum_probs=217.4
Q ss_pred hHH-HHHHHHHHHHHhhcchHHHHHHHhc---CC------CC-ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcc
Q 000696 952 PLR-AILTSFQAFCECVGDLEMRKILARD---GE------QN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR 1020 (1349)
Q Consensus 952 P~~-~aleAlk~ll~~~g~~~~~~~L~~~---g~------W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s 1020 (1349)
|.| .+.++....+.+.|-.++...+++. |- .. +..-...|.+.+..++-...-++++.|++..+..|++
T Consensus 731 ~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 731 QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 444 4667777777777777776666642 21 11 2223446777777877777778999999999999999
Q ss_pred cCccchHHHHHHHHHh---hhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHH
Q 000696 1021 QQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVIL 1093 (1349)
Q Consensus 1021 ~~~~~Ri~a~af~sEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~----~~~v~~~~~~lL~all 1093 (1349)
+....|.-|+-.++.+ ++.|.. +.+...+-.+|.+.+....|.|-...|.++-.|- ..|+..-.+.+||.+.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~e-e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 9999998888666654 444433 4556677788999999999999888777766443 3366666788899999
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 000696 1094 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1173 (1349)
Q Consensus 1094 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1173 (1349)
.-|....+.|+-..+.-++.|-.+-.+.....--..||+-|--++-.-+-++|.+|..-||-+++.. |++
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI-GPq--------- 959 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI-GPQ--------- 959 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc-CHH---------
Confidence 9998888999999999999999886664444556688888888888889999999999999999843 332
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHH----hhhhhhhhhhhhhhccccCCCCCCCChH-HHHHHHHHHHHHhCcchHHHH
Q 000696 1174 AMLPRLILHIYDDDLSVRQACRNTLK----QVAPFMEIGVYGIFNSHCFNSDHRSDYE-TFVRDLTRQFVQHFPSRIDSY 1248 (1349)
Q Consensus 1174 ~~LvpLLlHL~D~~~~V~~ack~tL~----~~a~lL~~~l~~lf~~~~~~~~~~l~~~-~f~~~l~k~L~~~~~~~~~~~ 1248 (1349)
..|..|+-.|+=++-+-+.-.--|.. -|++|- .+.++.+..- . ..++-. -.++.+| +|.+.-.+..-.|
T Consensus 960 dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt--VLPalmneYr-t--Pe~nVQnGVLkals-f~FeyigemskdY 1033 (1172)
T KOG0213|consen 960 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT--VLPALMNEYR-T--PEANVQNGVLKALS-FMFEYIGEMSKDY 1033 (1172)
T ss_pred HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh--hhHHHHhhcc-C--chhHHHHhHHHHHH-HHHHHHHHHhhhH
Confidence 35566665555443332222222222 344432 2233333210 0 011110 0222222 2233333333444
Q ss_pred HHHHHH----hhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhc----cCCChhHHHHHHHHH
Q 000696 1249 MGSTIQ----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QSADAIVRATCSSSL 1315 (1349)
Q Consensus 1249 l~~~l~----ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll----~Dpdp~VR~~Aa~aL 1315 (1349)
+-...+ .+-+....=|+.|+-.|-.+.-..+. .+.|+..-.|.. +. -|+.|.|...--+++
T Consensus 1034 iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN-~iWpNIle~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1034 IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLN-LIWPNILETSPHVIQAFDEAM 1102 (1172)
T ss_pred HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHH-HhhhhhcCCChHHHHHHHHHH
Confidence 444433 45566677899999888877544321 122444444444 33 278888877655554
No 38
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.26 E-value=0.002 Score=71.99 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=112.9
Q ss_pred chHHHHHHHHHhhhcC--CC-hhcH---HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000696 1025 QREAAAAALSEFVRYS--GG-FDSL---LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1095 (1349)
Q Consensus 1025 ~Ri~a~af~sELl~~~--~~-~~~l---~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~ 1095 (1349)
.|+.|.--+-.++... .. ...+ ++.++..+...+.|.+..|-+.|+.-++.++.+ .+..|...+++.++.-
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~ 102 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKK 102 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3677777777777654 11 1222 234557888899999999999999999988754 6788899999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhccCC-cCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH--H
Q 000696 1096 LDDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ--I 1172 (1349)
Q Consensus 1096 L~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ--v 1172 (1349)
+.|....|.-.|..+|..+....+ ...+ + ...+.+...+.++.+|..+...+..+...... ....+..+ +
T Consensus 103 ~~~~~~~i~~~a~~~L~~i~~~~~~~~~~---~---~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~-~~~~l~~~~~~ 175 (228)
T PF12348_consen 103 LGDSKKFIREAANNALDAIIESCSYSPKI---L---LEILSQGLKSKNPQVREECAEWLAIILEKWGS-DSSVLQKSAFL 175 (228)
T ss_dssp GG---HHHHHHHHHHHHHHHTTS-H--HH---H---HHHHHHHTT-S-HHHHHHHHHHHHHHHTT------GGG--HHHH
T ss_pred HccccHHHHHHHHHHHHHHHHHCCcHHHH---H---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc-hHhhhcccchH
Confidence 999888899999999999998765 2211 1 23345678999999999999999999874330 11222211 1
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhc
Q 000696 1173 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1214 (1349)
Q Consensus 1173 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~ 1214 (1349)
-.....+.-.+.|.+++||++||.+|.......+-.-..+++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 223334445668999999999999999987665444344443
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.18 E-value=0.07 Score=66.99 Aligned_cols=331 Identities=18% Similarity=0.184 Sum_probs=205.1
Q ss_pred ChhhHHHHHHHHHHHhhhcCchh-HHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC-hhcHH-HHHHHHHHhhcCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKE-VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLL-EQMVEALCRHVSD 1060 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~-~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~-~~~i~~L~~~l~D 1060 (1349)
+.+....-+..|.+.+....+.. .+.+..++...|+++++..|..++.-+...++++.. .+.+. ..++..+...+.|
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 34555555556777776655544 788889999999999998888888777777776533 12222 3467788888999
Q ss_pred CChhHHHHHhhhccCCcchhh--h-hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhc
Q 000696 1061 ESPTVRGLCLRGLVQIPSIHI--H-QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLR 1135 (1349)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~~v--~-~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--i~~~lr 1135 (1349)
++..|...|++.|.+++.++. . -+.+..+..+.+.+...++.+++..+..+.++....+. ......+ +...+-
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~--~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE--AAEAVVNSGLLDLLL 208 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH--HHHHHHhccHHHHHH
Confidence 999999999999999986521 1 11122266666777666788999999999998765322 1122222 334444
Q ss_pred CcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH-HHhhhhHHHHhccCCC--hhHHHHHH-HHHHhhhhh-----hh
Q 000696 1136 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ-IHAMLPRLILHIYDDD--LSVRQACR-NTLKQVAPF-----ME 1206 (1349)
Q Consensus 1136 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ-v~~~LvpLLlHL~D~~--~~V~~ack-~tL~~~a~l-----L~ 1206 (1349)
..+++++.-||.+|++++++|+..-.| .+.+.++ +..-++.++.+-.++. ..+.--.. .-++.++.. ++
T Consensus 209 ~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~ 286 (503)
T PF10508_consen 209 KELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE 286 (503)
T ss_pred HHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH
Confidence 567778899999999999999983322 3334333 7777777777764443 11111111 122223321 11
Q ss_pred h---hhhhhhccccCCCCCCCChHHHHH---HHH-----HH-HHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhh
Q 000696 1207 I---GVYGIFNSHCFNSDHRSDYETFVR---DLT-----RQ-FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSI 1274 (1349)
Q Consensus 1207 ~---~l~~lf~~~~~~~~~~l~~~~f~~---~l~-----k~-L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l 1274 (1349)
- .+..+|... +.+...-.+..+. .++ +. |..++++.+...+.....+.++...++|..|..-++.+
T Consensus 287 ~~p~~~~~l~~~~--~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 287 LYPAFLERLFSML--ESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 122333221 1111111111111 121 23 34888999999999999999999999999999888988
Q ss_pred hccCch---hhhhhccHHH--------HHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1275 LCLCDD---QHILSLFYTQ--------VFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1275 ~~~~~~---~~~~~~~~e~--------l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
+...++ +....+...+ ....+.. +.+-|=|.+|+.|=.-|.-+..+
T Consensus 365 l~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 365 LTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcCCchHHHHHHHHHHHHHhcC
Confidence 654432 2221111111 1115666 77889999999887766555533
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.17 E-value=0.00077 Score=63.21 Aligned_cols=86 Identities=29% Similarity=0.371 Sum_probs=62.0
Q ss_pred HHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000696 1052 EALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1349)
Q Consensus 1052 ~~L~~~l-~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1130 (1349)
..|.+.+ +|+++.||.-+++.||++.. +.+++.+...+.|.+..|+..|..+|+++-. ...-+.+..+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~ 70 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence 3566666 88999999999999997764 4668888888888888899999999998742 2233333332
Q ss_pred HhhhcCcCCCCChHHHHHHHHHHH
Q 000696 1131 SVRLRNLQVSMNVKMRRNAFAAFG 1154 (1349)
Q Consensus 1131 ~~~lrpffede~~~vR~aAi~LfG 1154 (1349)
+.++++..||.+|+..+|
T Consensus 71 ------l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 ------LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HTC-SSHHHHHHHHHHHH
T ss_pred ------HcCCCcHHHHHHHHhhcC
Confidence 345566777998888776
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.15 E-value=0.00081 Score=57.66 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000696 1261 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1261 ~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
+.+|.+|++.+|.+....+..... ....++..|.. +++|+++.||..|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 468999999999987777654432 45789999999 89999999999999999864
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.03 E-value=0.0048 Score=57.80 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=62.0
Q ss_pred hHHHHhc-cCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000696 1177 PRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1255 (1349)
Q Consensus 1177 vpLLlHL-~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~y 1255 (1349)
.+|+-.| +|+++.|+..+-.+|+..+. ++. +......
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------~~~-------------------~~~L~~~ 39 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-----------------------PEA-------------------IPALIEL 39 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------HHH-------------------HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------HhH-------------------HHHHHHH
Confidence 4566667 89999999988888874321 112 2222346
Q ss_pred hcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000696 1256 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1316 (1349)
Q Consensus 1256 lkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1316 (1349)
++++.+.+|.+|++.+|.+. .+.....|...+.+|++..||..|.+|||
T Consensus 40 l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 40 LKDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 68999999999999999663 24456667775667788999999999986
No 43
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.93 E-value=0.04 Score=64.69 Aligned_cols=211 Identities=18% Similarity=0.136 Sum_probs=129.9
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcc-CCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc-cCCCcchH
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKS-SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQRE 1166 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~-l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~-~~~~~~~~ 1166 (1349)
|...++.+.++....+..|+.++.+++.. .-.+.+..-...|+-.+...+.+.+.+=+..|..+.|-++= .|.|...+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 55566677777777778888887777732 22223333344555555556666666667888888888863 45556666
Q ss_pred HHHHHHHhhhhHHHHhccCC--ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000696 1167 AFLEQIHAMLPRLILHIYDD--DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1244 (1349)
Q Consensus 1167 ~~~eQv~~~LvpLLlHL~D~--~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~ 1244 (1349)
.+.+++...|.+.+ .|. .+.++.+|-.||..|+-+-+....++... -+-+..++....-+-.+.
T Consensus 125 ei~~~~~~~L~~~l---~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-----------~~~le~if~~~~~~~~~~ 190 (309)
T PF05004_consen 125 EIFEELKPVLKRIL---TDSSASPKARAACLEALAICTFVGGSDEEETEEL-----------MESLESIFLLSILKSDGN 190 (309)
T ss_pred HHHHHHHHHHHHHH---hCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-----------HHHHHHHHHHHhcCcCCC
Confidence 66666666555543 454 45677899999998875422211111000 011111111110000000
Q ss_pred HHHHHHHHHHhhc-CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1245 IDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1245 ~~~~l~~~l~ylk-S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
.+... .+.+.+..+|..--|+++-.++..... ...+..++.|.. |+..+|..||..|.+++.+++....
T Consensus 191 --------~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 191 --------APVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred --------cccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 00111 134679999988889999988875554 224667888999 8889999999999999999997776
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.90 E-value=0.011 Score=75.85 Aligned_cols=249 Identities=16% Similarity=0.189 Sum_probs=166.7
Q ss_pred chHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhH
Q 000696 1025 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1103 (1349)
Q Consensus 1025 ~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1103 (1349)
-|..|+..|.....+... ..+-..+.....+--+|.+|.||..+.+-+|+++.. .-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 488888888887665432 122233445555566999999999999999999865 223334566777777777777889
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc
Q 000696 1104 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1183 (1349)
Q Consensus 1104 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1183 (1349)
+.-|+.++..++..++..+ +.--.+...++.+.+|.+..+|......|-+|.+..+...-.+ ....|...-+
T Consensus 293 r~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~l~ 364 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT------QLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc------cchhhHHHHh
Confidence 9999999999999988773 4445566677889999999999999999999887322211111 3556777778
Q ss_pred cCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhH
Q 000696 1184 YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPII 1263 (1349)
Q Consensus 1184 ~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~I 1263 (1349)
+|+..+|+.+...--...+.+++- +.+.+...++. +.....+.-++..++
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~-------------------~~~~~i~~~~i-----------lp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNA-------------------SCYPNIPDSSI-----------LPEVQVLVLDNALHV 414 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCc-------------------ccccccchhhh-----------hHHHHHHHhcccchH
Confidence 899888887654333333322221 11111111110 223344667788999
Q ss_pred HHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000696 1264 QANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1264 R~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1317 (1349)
|.+.+.++..+.-..+.+. ..+.+...+.. +++|.+|.||-.-...+..
T Consensus 415 r~a~a~~~~~~~p~~~k~~----ti~~llp~~~~-~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 415 RSALASVITGLSPILPKER----TISELLPLLIG-NLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred HHHHhccccccCccCCcCc----CccccChhhhh-hcchhhHHHHHhhHHHHHH
Confidence 9999988887765555222 23556666777 7999999999877655433
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.88 E-value=0.02 Score=61.70 Aligned_cols=112 Identities=25% Similarity=0.251 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhH
Q 000696 1024 FQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESV 1103 (1349)
Q Consensus 1024 ~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V 1103 (1349)
.-|..++..++.|.... ..+.+..+..+...++|++|.||+-|+..|..+.....-+...+++..++..+.|.|+.|
T Consensus 3 ~vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 34677778888776543 245577788999999999999999999999998876555556777788889999999999
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000696 1104 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1138 (1349)
Q Consensus 1104 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1138 (1349)
+--|-..+..+....++..+...++.+..++-..-
T Consensus 80 r~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNPNIIYNNFPELISSLNNCY 114 (178)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcc
Confidence 99999999999998777778888888777665543
No 46
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0096 Score=68.22 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHH
Q 000696 1140 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1199 (1349)
Q Consensus 1140 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1199 (1349)
.+++++.+.|...+.+|++..+. .+..+++- +.++-|.--+-|...+|+..--.++.
T Consensus 345 ~dnEeiqchAvstLrnLAasse~-n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 345 GDNEEIQCHAVSTLRNLAASSEH-NVSVIRES--GAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred CCchhhhhhHHHHHHHHhhhhhh-hhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHH
Confidence 46788999999999999974433 33344432 33333444455777777764433333
No 47
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.67 E-value=2.7 Score=51.58 Aligned_cols=509 Identities=14% Similarity=0.131 Sum_probs=262.0
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHH--hhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000696 743 TLHSCTTAICDRTKQSAEGAIQAVVEFV--TKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1349)
Q Consensus 743 ll~~ll~~L~d~~~~~~~~A~~~L~~~l--~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~v 820 (1349)
+.+.+.++++.. +-+++.|-.+|+-++ -..|.-+.|+++-++.=+|.+ +-+-.++..|+.+--||--|..-. +.|
T Consensus 23 ~~qd~~~sfn~S-pvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~K-lFQhkd~~Lrq~VY~aIkelS~~t-edv 99 (898)
T COG5240 23 LLQDMNESFNKS-PVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILK-LFQHKDLYLRQCVYSAIKELSKLT-EDV 99 (898)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhhcc-hhh
Confidence 344455555443 233344444454443 223444435556666666655 334455667777777776665543 222
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCC-ccCCCCCCCCCCCccch
Q 000696 821 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM-EKGDYSSHSADTWIDDD 899 (1349)
Q Consensus 821 V~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~-~~~~~~~~~~~~~~~~~ 899 (1349)
+. |--...||+.- ..| ...-+..+..|..++.....|.-.. -+.++-+.. .-
T Consensus 100 lm-------~tssiMkD~~~---g~~-----------~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~------~a 152 (898)
T COG5240 100 LM-------GTSSIMKDLNG---GVP-----------DDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTS------MA 152 (898)
T ss_pred hH-------HHHHHHHhhcc---CCc-----------cccccHHHHHHHHhcCcchhhhHHHHhhhhccccc------hh
Confidence 21 00112244322 222 1122233333444444433332100 000111110 01
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHH--HHHhhhcccCCC-CCCCChHHHHHHHHHHHHHhhcc---hHHH
Q 000696 900 ILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAAL--TLQLGSCHGLAS-SGQHEPLRAILTSFQAFCECVGD---LEMR 973 (1349)
Q Consensus 900 ~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aL--L~ql~~~~~~~~-~~~~~P~~~aleAlk~ll~~~g~---~~~~ 973 (1349)
+.-||.+.-|.+++.. ...++++--+.=-|. +.|.-.-+|-.. ...-+|.+ -..|+ +||-+..- ..+.
T Consensus 153 ~~saalv~aYhLlp~~----~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~is-qYHal-GlLyq~kr~dkma~l 226 (898)
T COG5240 153 RRSAALVVAYHLLPNN----FNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPIS-QYHAL-GLLYQSKRTDKMAQL 226 (898)
T ss_pred hhhhHHHHhhhhcccc----HHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHH-HHHHH-HHHHHHhcccHHHHH
Confidence 2348889999999875 233444332222222 223222222110 01234542 22233 33333333 2222
Q ss_pred HHHHhcC---CCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHH
Q 000696 974 KILARDG---EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQM 1050 (1349)
Q Consensus 974 ~~L~~~g---~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~ 1050 (1349)
+.++.-. ...+......+|......| ..+++....+..+|...|++..+...+-++-..+.|--.. ....+.++.
T Consensus 227 klv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~~ 304 (898)
T COG5240 227 KLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQT 304 (898)
T ss_pred HHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHHH
Confidence 3333211 1224455566665444443 3344445555555556666666666655554444332222 334566888
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1127 (1349)
+..|..-++.++...|-.|+|-|..++. +++.---+. ++ +...|.+..|..-|+.+|-+-.. ++.+.
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vE---sLIsd~Nr~IstyAITtLLKTGt---~e~id--- 374 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VE---SLISDENRTISTYAITTLLKTGT---EETID--- 374 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HH---HHhhcccccchHHHHHHHHHcCc---hhhHH---
Confidence 9999999999999999999999998874 233111111 22 22345567788777777776543 33343
Q ss_pred HhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhh-h
Q 000696 1128 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM-E 1206 (1349)
Q Consensus 1128 ~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-~ 1206 (1349)
.+...|..|.-|.++....-+|.....|+-.-..++ . -.+..|...|+. ...-.-.++.-.|+-..-.+- .
T Consensus 375 -rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-~----s~l~FL~~~L~~--eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 375 -RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-L----SYLDFLGSSLLQ--EGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred -HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH-H----HHHHHHHHHHHh--cccchHHHHHHHHHHHHHhhCch
Confidence 445566789999999999889888888875222211 1 122333333332 333344444444444443332 2
Q ss_pred h--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-----cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc
Q 000696 1207 I--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-----PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1207 ~--~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~-----~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
. ..-+.++.. .+| -.|.+..-+|...|.++- |+++-.++-.-+.. ....||.+|+.-+..+.-+..
T Consensus 447 skEraLe~LC~f-IED---cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---EN~ivRsaAv~aLskf~ln~~ 519 (898)
T COG5240 447 SKERALEVLCTF-IED---CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---ENNIVRSAAVQALSKFALNIS 519 (898)
T ss_pred HHHHHHHHHHHH-Hhh---cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---hhhHHHHHHHHHHHHhccCcc
Confidence 2 112333332 222 235566667777776553 45554444443332 356799999988776655443
Q ss_pred hhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1280 DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1280 ~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+- ...+.+..+|.+ -+.|.|-.||.+|+-+|..+.
T Consensus 520 d~----~~~~sv~~~lkR-clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 520 DV----VSPQSVENALKR-CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cc----ccHHHHHHHHHH-HhhcccHHHHHHHHHHHHhhh
Confidence 22 234678888988 899999999999999999887
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.21 Score=64.01 Aligned_cols=288 Identities=15% Similarity=0.164 Sum_probs=163.7
Q ss_pred hhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000696 999 VSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1349)
Q Consensus 999 m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1349)
.++.+|.+..-.++.+.+-++++++.-|..|+-|++-+ ....++++++..+.+.+.|+++.||+-|+=+++++-.
T Consensus 82 yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 82 YAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 35667777777777888888888888888888776653 2346667778888888888888888888888877753
Q ss_pred hhhhhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC-CCChHHHHHHHHHHHHh
Q 000696 1079 IHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGAL 1156 (1349)
Q Consensus 1079 ~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~L 1156 (1349)
-+.+.+... ....+-..+.|.|..|+-.|+.+|..+=.. ....++..++.++-.+-- ......+..=...++.|
T Consensus 157 ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L 232 (757)
T COG5096 157 LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVL 232 (757)
T ss_pred cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHH
Confidence 322223233 455555566677777888888888777654 334455555554433221 11111245555566666
Q ss_pred hccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhh--------hhhccccCCCCCCCChH
Q 000696 1157 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVY--------GIFNSHCFNSDHRSDYE 1227 (1349)
Q Consensus 1157 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~--------~lf~~~~~~~~~~l~~~ 1227 (1349)
.........++ + ...-.+..|++-.|+.|...+-....++.+++.. ... .+..+. ..+ -.
T Consensus 233 ~~~~~~~~~s~---~--~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-----~~~-~~ 301 (757)
T COG5096 233 TERVPTTPDSA---E--DFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-----ESL-IQ 301 (757)
T ss_pred HccCCCCCCcH---H--HHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-----HHH-HH
Confidence 65322211111 1 1122334677788999999999999999887765 322 122221 000 12
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc---hhhhhhccHHHHHHHHHHHhccC--
Q 000696 1228 TFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD---DQHILSLFYTQVFGLLVVKLSQS-- 1302 (1349)
Q Consensus 1228 ~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~---~~~~~~~~~e~l~~~L~~~Ll~D-- 1302 (1349)
.++...-....+.++..++.-.....-.+++| +..+.-.+.+... .+.. .++...++. .-.+
T Consensus 302 ~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~-------i~~~lek~~~~t~l~~~~n~-----~~~L~e~~~-y~~~~~ 368 (757)
T COG5096 302 YVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDD-------IYIKLEKLDQLTRLADDQNL-----SQILLELIY-YIAENH 368 (757)
T ss_pred HHHHHhhHHHHHhhHHHHHHHhhhhhhhccch-------HHHHHHHHHHHhhcCCchhh-----HHHHHHHHH-HHhhcc
Confidence 34445555555666655555444433333333 3333333322211 1221 113333444 2445
Q ss_pred CChhHHHHHHHHHHHHH
Q 000696 1303 ADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1303 pdp~VR~~Aa~aL~~l~ 1319 (1349)
.++.+-..|-++||.+.
T Consensus 369 ~~~e~v~~~ik~lgd~~ 385 (757)
T COG5096 369 IDAEMVSEAIKALGDLA 385 (757)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 77888788888888776
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.51 E-value=0.0042 Score=53.24 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=46.8
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 000696 1063 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1349)
Q Consensus 1063 ~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~l 1114 (1349)
|.||.-|+.+||+++.. ....|.+.+++.+...|.|.++.|+..|..+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999998743 67889999999999999998999999999999875
No 50
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.49 E-value=0.15 Score=59.60 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=86.9
Q ss_pred HHHHHHHHHH-hhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc
Q 000696 1046 LLEQMVEALC-RHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1124 (1349)
Q Consensus 1046 l~~~~i~~L~-~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~ 1124 (1349)
.++.+++.|. -+++.+++.||..+++.||-...-.. +....-++-++..+...++.|...|++++-+++-.=+...+.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3445554444 68899999999999998885442210 122333444555554447889999999999997654433322
Q ss_pred hh--------HHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh
Q 000696 1125 PI--------LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1182 (1349)
Q Consensus 1125 ~~--------l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1182 (1349)
.. ...+..-+..+++++++++|+.|.+-|.+|.-.+.-.. ...++..|+-+.++
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFN 163 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcC
Confidence 22 23555667788999999999999999999986544333 34455555554443
No 51
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.11 Score=69.36 Aligned_cols=326 Identities=15% Similarity=0.164 Sum_probs=207.5
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHH-HHHhhhcCCC-hhcHHHHHHHHHHhhcCCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYSGG-FDSLLEQMVEALCRHVSDE 1061 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af-~sELl~~~~~-~~~l~~~~i~~L~~~l~D~ 1061 (1349)
.-.||-+-.. ||.-|.+ |.+++....+-++.--+..--++|| |.-+...... .+-.++.++-.|-+..-||
T Consensus 938 ~isTYKELc~-LASdl~q------PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP 1010 (1702)
T KOG0915|consen 938 KISTYKELCN-LASDLGQ------PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDP 1010 (1702)
T ss_pred cchHHHHHHH-HHhhcCC------hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCC
Confidence 3456655554 8876643 4555555444444433333333333 3333333322 3444678999999999999
Q ss_pred ChhHHHHHhhhccCCc--ch--hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000696 1062 SPTVRGLCLRGLVQIP--SI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1349)
Q Consensus 1062 ~~~VR~lslrGLgnl~--~~--~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1137 (1349)
++.||..- ..+.|.. .. -+.+|...++.-++.+|-++.=+|+-.+=.+|+++++.-+...+.--+..+=..+..-
T Consensus 1011 ~~~Vq~aM-~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1011 DKKVQDAM-TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred cHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 99998533 3334332 21 4688999999999999998888899999999999999988888888888888888888
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCC---cchHHHHHHHHhhhhHHHH--hccCCChhHHHHHHHHHHhhhhhhhhhhhhh
Q 000696 1138 QVSMNVKMRRNAFAAFGALSNFGVG---SQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1212 (1349)
Q Consensus 1138 fede~~~vR~aAi~LfG~L~~~~~~---~~~~~~~eQv~~~LvpLLl--HL~D~~~~V~~ack~tL~~~a~lL~~~l~~l 1212 (1349)
.||-.+.||.+|=.+-..|++.+.. ....+=-.++..++.|.|+ |.--.-++|+..|-.|+-..+..-+-.++..
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 9999999999997665555553211 1111122567778888775 3334456899999888888776544433222
Q ss_pred hccc------cCCCCCCCChHHHHHHHHHHHHHhCcchHHH-------------HHHHHHHhh----------------c
Q 000696 1213 FNSH------CFNSDHRSDYETFVRDLTRQFVQHFPSRIDS-------------YMGSTIQAF----------------E 1257 (1349)
Q Consensus 1213 f~~~------~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~-------------~l~~~l~yl----------------k 1257 (1349)
+.+. ++.+-+ +..++-+.-.+.+...+.++. =+.-|++|. +
T Consensus 1170 ~~~LIp~ll~~~s~lE----~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAYSELE----PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred hhHHHHHHHHHccccc----hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 2111 011000 011111111111111111111 122233333 3
Q ss_pred CC-ChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhccc
Q 000696 1258 AP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1324 (1349)
Q Consensus 1258 S~-~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1324 (1349)
++ --.-|-+++.||-.+.+.++.++. ....-++.++.. ..+|-.+.||+.-|-|.|+|.|+|.-
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~-g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMT--PYSGKLLRALFP-GAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccC--cchhHHHHHHhh-ccccccHHHHHHHHHHHHHHHhcCCh
Confidence 22 234678899999999887776664 445668899888 89999999999999999999999865
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.45 E-value=0.067 Score=57.67 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=85.2
Q ss_pred ChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcch-hHHhHHhhhcCcCCC
Q 000696 1062 SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP-ILLNLSVRLRNLQVS 1140 (1349)
Q Consensus 1062 ~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~-~l~~i~~~lrpffed 1140 (1349)
||.||.-++.++|.+.... .......++.+...|.|.+..|+..|+..|++++.. +.-.+.. ++..++. ...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~----~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILK----LLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHH----HHcC
Confidence 6899999999999887541 123455678889999999999999999999999865 2222332 2244443 4599
Q ss_pred CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000696 1141 MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1187 (1349)
Q Consensus 1141 e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1187 (1349)
++++||..|-..|..+.... .. +-+.+.++.++.||.+..
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~---~~----~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKR---NP----NIIYNNFPELISSLNNCY 114 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhc---cc----hHHHHHHHHHHHHHhCcc
Confidence 99999999999999999721 12 234788999999999863
No 53
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.18 Score=63.68 Aligned_cols=297 Identities=14% Similarity=0.161 Sum_probs=182.6
Q ss_pred cCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh
Q 000696 1002 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI 1081 (1349)
Q Consensus 1002 ~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v 1081 (1349)
+.+.|+-.|= .+++..|+.=..+-++-...+=||... +.++-=+.|.|.+-++.+|..|-.+||-.||+|+..++
T Consensus 65 GypahFGqie--clKLias~~f~dKRiGYLaamLlLdE~---qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Em 139 (866)
T KOG1062|consen 65 GYPAHFGQIE--CLKLIASDNFLDKRIGYLAAMLLLDER---QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM 139 (866)
T ss_pred CCCccchhhH--HHHHhcCCCchHHHHHHHHHHHHhccc---hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH
Confidence 3444554442 245556665444433333333333322 22322357899999999999999999999999997654
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC
Q 000696 1082 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1082 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1161 (1349)
. +.+.|-+-..+...++-|+-.|+.++-++.....+ -++ ++...-|.+.-+-+..|=.++..+.-++++.+.
T Consensus 140 a---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 A---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred h---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 2 33445555556667888999999999999987642 122 223344566667778888889999888887432
Q ss_pred CcchHHHHHHHHhhhhHHHHhccC----CChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHH
Q 000696 1162 GSQREAFLEQIHAMLPRLILHIYD----DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1237 (1349)
Q Consensus 1162 ~~~~~~~~eQv~~~LvpLLlHL~D----~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L 1237 (1349)
..-..|++ +...+|..|-.+.- ++-+|. +.++|||+.++-.++.- ++.+ ..++.+.++|+....
T Consensus 212 -~~l~~fr~-l~~~lV~iLk~l~~~~yspeydv~-------gi~dPFLQi~iLrlLri--LGq~-d~daSd~M~DiLaqv 279 (866)
T KOG1062|consen 212 -DALSYFRD-LVPSLVKILKQLTNSGYSPEYDVH-------GISDPFLQIRILRLLRI--LGQN-DADASDLMNDILAQV 279 (866)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHhcCCCCCccCcc-------CCCchHHHHHHHHHHHH--hcCC-CccHHHHHHHHHHHH
Confidence 23344555 34445554443332 222344 36789998844433332 2222 234566777776666
Q ss_pred HH---hCcchHHHHHHHHHH--hhcCCChhHHHHHHHHHHhhhccCchhhhhhc-----------cHHHHH---HHHHHH
Q 000696 1238 VQ---HFPSRIDSYMGSTIQ--AFEAPWPIIQANAIYFSSSILCLCDDQHILSL-----------FYTQVF---GLLVVK 1298 (1349)
Q Consensus 1238 ~~---~~~~~~~~~l~~~l~--ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~-----------~~e~l~---~~L~~~ 1298 (1349)
.. ...+.-+-.+-+|+. |-=.|.+.+|-.|+-.+|-++.+-+...+ ++ |...+. .+..+
T Consensus 280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir-YvaLn~L~r~V~~d~~avqrHr~tIle- 357 (866)
T KOG1062|consen 280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR-YVALNMLLRVVQQDPTAVQRHRSTILE- 357 (866)
T ss_pred HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee-eeehhhHHhhhcCCcHHHHHHHHHHHH-
Confidence 53 223444444555555 33335677999999999977665442221 12 212222 23556
Q ss_pred hccCCChhHHHHHHHHHHHHHHhcccc
Q 000696 1299 LSQSADAIVRATCSSSLGWLLKSINSH 1325 (1349)
Q Consensus 1299 Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1325 (1349)
-++|||+++|++|-+=++.+.+.+|..
T Consensus 358 CL~DpD~SIkrralELs~~lvn~~Nv~ 384 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSYALVNESNVR 384 (866)
T ss_pred HhcCCcHHHHHHHHHHHHHHhccccHH
Confidence 789999999999999999998888864
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.29 E-value=0.011 Score=57.15 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc
Q 000696 1105 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1184 (1349)
Q Consensus 1105 leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1184 (1349)
..+|-+|+.+--.++.. +..++-.|..-+..+|+|+++.||.+|.+.+.++++..++. .-...++|+..|..+ +.
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl---~~ 78 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKL---SA 78 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---Hc
Confidence 45666677766655544 67777778788889999999999999999999999865432 233456666666665 46
Q ss_pred CCChhHHHHHH
Q 000696 1185 DDDLSVRQACR 1195 (1349)
Q Consensus 1185 D~~~~V~~ack 1195 (1349)
|++++|+.+|.
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 99999999884
No 55
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.22 Score=62.04 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=113.2
Q ss_pred hHHHHHHHHhhhhcccCccchHHHH-HHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hh-
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI- 1081 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v- 1081 (1349)
++-.++++.++.-+++.-..|+... +-|.+-+........++..++.++.++..-++..||.-+++=|.-+... .+
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid 120 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID 120 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC
Confidence 5666777777777777777777653 2233333333334568888999999999999999999998866644321 11
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhcc
Q 000696 1082 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1082 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1159 (1349)
.-....+..+++.-+.|....|+.+|+.+|+++=+.-.+. .+...+..+ .-.|.+++||.+|..-...
T Consensus 121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iqnDpS~EVRRaaLsnI~v---- 190 (892)
T KOG2025|consen 121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQNDPSDEVRRAALSNISV---- 190 (892)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------HhcCCcHHHHHHHHHhhcc----
Confidence 1234678899999999999999999999999987432222 344555554 3489999999998754322
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000696 1160 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1192 (1349)
Q Consensus 1160 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1192 (1349)
.. +.++..+-.-.|.+..+|+
T Consensus 191 --dn----------sTlp~IveRarDV~~anRr 211 (892)
T KOG2025|consen 191 --DN----------STLPCIVERARDVSGANRR 211 (892)
T ss_pred --Cc----------ccchhHHHHhhhhhHHHHH
Confidence 11 2556666777777766664
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.11 E-value=0.0074 Score=58.33 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=73.9
Q ss_pred HHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCC
Q 000696 1065 VRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1141 (1349)
Q Consensus 1065 VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede 1141 (1349)
.|+-++-||+.++.. .+.+|.+.+++.++.++.|.|.+|++-|.++|-+|....... +-+.+..|-..+...+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 367778888877543 688999999999999999999999999999999998776544 3447778888888899999
Q ss_pred ChHHHHHHHHHHHHhh
Q 000696 1142 NVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1142 ~~~vR~aAi~LfG~L~ 1157 (1349)
++.||.+| .++-.|.
T Consensus 81 d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLL 95 (97)
T ss_pred chhHHHHH-HHHHHHh
Confidence 99999998 4444443
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.68 Score=57.96 Aligned_cols=168 Identities=14% Similarity=0.233 Sum_probs=107.0
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHH-HHHHhhhcCCChhcHHHHHHHHHHhhcCCCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA-ALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1062 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a-f~sELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1062 (1349)
+..-|.-||. |..--+...|..-+.+..-+..+|++.-.--|.-|+. .|-=|+++|.. ++..+..|.+.+.||+
T Consensus 120 S~n~ye~giA-L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 120 SSNVYEVGLA-LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPD 194 (877)
T ss_pred cCccchhhhe-ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCC
Confidence 4555666665 2222233356667777788888888877777766664 44457777743 3556778888999999
Q ss_pred hhHHHHHhhhccCCcch--------------------------hh-----------hhhHHHHHHHHHhhccCCC-hhHH
Q 000696 1063 PTVRGLCLRGLVQIPSI--------------------------HI-----------HQYATQVLSVILALLDDLD-ESVQ 1104 (1349)
Q Consensus 1063 ~~VR~lslrGLgnl~~~--------------------------~v-----------~~~~~~lL~all~~L~d~d-~~V~ 1104 (1349)
|.|...|+--+-.+|.. |+ .++.+-+++.+.+.+..+. -.+.
T Consensus 195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl 274 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL 274 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence 99988887644333210 11 2344556677766665443 2366
Q ss_pred HHHHHHHHHH--hccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1105 LTAVSCLLTI--LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1105 leAm~~L~~l--L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
.|.+++.-.. +..++ ++..++.+- +.+||-|++|.+..+|.-+.-+||.+++
T Consensus 275 YECvNTVVa~s~s~g~~-d~~asiqLC-vqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 275 YECVNTVVAVSMSSGMS-DHSASIQLC-VQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred HHHHHHheeehhccCCC-CcHHHHHHH-HHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 6666665444 11111 233333332 3679999999999999999999999998
No 58
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.08 E-value=0.19 Score=64.33 Aligned_cols=206 Identities=19% Similarity=0.169 Sum_probs=118.9
Q ss_pred HHHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHHHhhh-cCchhHHHHHHHHhhhhcccCcc----chHHHHHHH
Q 000696 961 QAFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQRF----QREAAAAAL 1033 (1349)
Q Consensus 961 k~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~-~~~~~~~~i~~~L~~~L~s~~~~----~Ri~a~af~ 1033 (1349)
.-.+..+|-...+..|.. |- ..-+-.+...+++..+.. .+| -+.++..+.++++++... -|.+|..-|
T Consensus 347 ~Dal~~~GT~~a~~~i~~---~i~~~~~~~~ea~~~~~~~~~~~~~P--t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~ 421 (574)
T smart00638 347 LDAVAQAGTPPALKFIKQ---WIKNKKITPLEAAQLLAVLPHTARYP--TEEILKALFELAESPEVQKQPYLRESALLAY 421 (574)
T ss_pred HHHHHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHhcCccccccHHHHHHHHHHH
Confidence 333456676666665553 21 111222334444433222 122 456666666776664332 367888888
Q ss_pred HHhhhc-CCCh--------hcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcc---CCCh
Q 000696 1034 SEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLD---DLDE 1101 (1349)
Q Consensus 1034 sELl~~-~~~~--------~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~---d~d~ 1101 (1349)
+.+++. |... ..+.+.+...|.+..++.+...+.+.||||||++... .+..+..-+. +...
T Consensus 422 ~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-------~i~~l~~~l~~~~~~~~ 494 (574)
T smart00638 422 GSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-------SIKVLEPYLEGAEPLST 494 (574)
T ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-------HHHHHHHhcCCCCCCCH
Confidence 888883 3322 3455666677777777778888999999999999742 3333333333 2234
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC-CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHH
Q 000696 1102 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1180 (1349)
Q Consensus 1102 ~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLL 1180 (1349)
.++..|+.+|+++...- ...+...++.| |++ .|..+||.+|+.++=.-- + ...+.++ +.-.+
T Consensus 495 ~iR~~Av~Alr~~a~~~-p~~v~~~l~~i------~~n~~e~~EvRiaA~~~lm~t~-----P-~~~~l~~----ia~~l 557 (574)
T smart00638 495 FIRLAAILALRNLAKRD-PRKVQEVLLPI------YLNRAEPPEVRMAAVLVLMETK-----P-SVALLQR----IAELL 557 (574)
T ss_pred HHHHHHHHHHHHHHHhC-chHHHHHHHHH------HcCCCCChHHHHHHHHHHHhcC-----C-CHHHHHH----HHHHH
Confidence 69999999999886543 34456666665 333 577899999987764421 1 1222233 23222
Q ss_pred HhccCCChhHHHHHHHH
Q 000696 1181 LHIYDDDLSVRQACRNT 1197 (1349)
Q Consensus 1181 lHL~D~~~~V~~ack~t 1197 (1349)
-+ |++.+|+.....+
T Consensus 558 ~~--E~~~QV~sfv~S~ 572 (574)
T smart00638 558 NK--EPNLQVASFVYSH 572 (574)
T ss_pred hh--cCcHHHHHHhHHh
Confidence 22 7778887655443
No 59
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.95 E-value=0.0087 Score=58.84 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcch
Q 000696 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1125 (1349)
Q Consensus 1050 ~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~-~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~ 1125 (1349)
++..|.+-+.|+++.+|.-++..|++++.+ ...... ..+++.++..|.+.+..++..|+.+|+++...-+. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHH
Confidence 455666777888999999999999999854 222222 37789999999998999999999999999865321 111
Q ss_pred hHH--hHHhhhcCcCCCCChHHHHHHHHHHHHhh
Q 000696 1126 ILL--NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1126 ~l~--~i~~~lrpffede~~~vR~aAi~LfG~L~ 1157 (1349)
... .+...+..++++.+..+|..|..+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 12334445677778999999999999875
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.85 E-value=0.15 Score=66.66 Aligned_cols=252 Identities=12% Similarity=0.157 Sum_probs=155.8
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhc-----CCChhcHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI 1079 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~-----~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lslrGLgnl~~~ 1079 (1349)
.+..|+-|++-++++++...|++|+-.++++|.. +.+.....|+++-.|..-+.| .+..||..-..-|+.+|..
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 4667888888888888888888888888888874 223445567777777777788 6677787777777766642
Q ss_pred --hhhhhHHHHHHH-HHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHh
Q 000696 1080 --HIHQYATQVLSV-ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1156 (1349)
Q Consensus 1080 --~v~~~~~~lL~a-ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1156 (1349)
..-.+...+=.+ +++.. +++ + .-....+.........+....-.|..|+.+-||.+=.+-.+.|
T Consensus 539 A~rFle~~q~~~~~g~~n~~---nse-------t---~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDP---NSE-------T---APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred HHHHHHHHHHHHhcccccCc---ccc-------c---ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 111111111111 12222 221 0 0011112233344444555556678888889999888888888
Q ss_pred hcc-CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhh----hccccCCCCCCCChHHHH
Q 000696 1157 SNF-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGI----FNSHCFNSDHRSDYETFV 1230 (1349)
Q Consensus 1157 ~~~-~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~l----f~~~~~~~~~~l~~~~f~ 1230 (1349)
+.| |+.+.-+.+. .=|+-.|+|.++..|-|==.++--++.++|| .+.+. ++. .+.|++..=-...+
T Consensus 606 C~FFGk~ksND~iL-------shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q-~ltD~EE~Viv~aL 677 (1431)
T KOG1240|consen 606 CVFFGKEKSNDVIL-------SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ-GLTDGEEAVIVSAL 677 (1431)
T ss_pred HHHhhhcccccchH-------HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH-hccCcchhhHHHHH
Confidence 884 5444444432 3345567899998888877778888889999 45543 232 24554322111111
Q ss_pred HHHHHHHHHh-C--cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc
Q 000696 1231 RDLTRQFVQH-F--PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1231 ~~l~k~L~~~-~--~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
.. .+.|.+. + .-.+-.++.....|+=-|..-||++|+.||-.+.+...
T Consensus 678 ~~-ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 678 GS-LSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HH-HHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 11 1222222 2 33466778888999999999999999999998877655
No 61
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.36 Score=54.13 Aligned_cols=189 Identities=18% Similarity=0.262 Sum_probs=98.1
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1168 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1168 (1349)
+.++...+.|.....--|+.-.|+. ....+.-++++++ +.-++..+-||..|-..||++.. ...-.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~v-----l~desq~pmvRhEAaealga~~~----~~~~~~ 104 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEV-----LLDESQEPMVRHEAAEALGAIGD----PESLEI 104 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHH-----hcccccchHHHHHHHHHHHhhcc----hhhHHH
Confidence 5666666665422222244444443 2333444555554 34566778999999999999873 111111
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCC-CC--CCChHHHHHHHHHHHHHhCcc
Q 000696 1169 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNS-DH--RSDYETFVRDLTRQFVQHFPS 1243 (1349)
Q Consensus 1169 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~-~~--~l~~~~f~~~l~k~L~~~~~~ 1243 (1349)
.++ . .+|++..|+..|..|+.+ ++| ......+...+.. +. ..+..+ +.++-..|......
T Consensus 105 l~k--------~--~~dp~~~v~ETc~lAi~r----le~~~~~~~~~~~~p~~SvdPa~p~~~ss-v~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 105 LTK--------Y--IKDPCKEVRETCELAIKR----LEWKDIIDKIANSSPYISVDPAPPANLSS-VHELRAELLDETKP 169 (289)
T ss_pred HHH--------H--hcCCccccchHHHHHHHH----HHHhhccccccccCccccCCCCCcccccc-HHHHHHHHHhcchh
Confidence 111 1 279999999999999998 456 2222111110100 01 101111 24555555555555
Q ss_pred hHHHHHHHHHHhhcC----------------CChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhc-cCCChh
Q 000696 1244 RIDSYMGSTIQAFEA----------------PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS-QSADAI 1306 (1349)
Q Consensus 1244 ~~~~~l~~~l~ylkS----------------~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll-~Dpdp~ 1306 (1349)
.+..| +++.|+++ +..-+|-.++...|++-.... +..|.+.|+ .-+.|+
T Consensus 170 l~~Ry--~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~a------------i~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 170 LFERY--RAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAA------------IPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHH--hhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhh------------hHHHHHHHHhhhcchH
Confidence 55555 45555543 445566677777776543221 222222111 235666
Q ss_pred HHHHHHHHHHHHH
Q 000696 1307 VRATCSSSLGWLL 1319 (1349)
Q Consensus 1307 VR~~Aa~aL~~l~ 1319 (1349)
||.-||+|||.+.
T Consensus 236 VRhEaAeALGaIa 248 (289)
T KOG0567|consen 236 VRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666666543
No 62
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=1.5 Score=53.80 Aligned_cols=244 Identities=13% Similarity=0.130 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhcc---CCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCc
Q 000696 1047 LEQMVEALCRHVSDESPTVRGLCLRGLV---QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1123 (1349)
Q Consensus 1047 ~~~~i~~L~~~l~D~~~~VR~lslrGLg---nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~ 1123 (1349)
++..+-.|.+++.+-||.+|...+.=|. +.+.-++-.|.+.+++.++.-|.|..+.|+--+=.+|+..|........
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3456778889999999999988877554 3344478889999999999999999999998888888888887765544
Q ss_pred chhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhh
Q 000696 1124 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1203 (1349)
Q Consensus 1124 ~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1203 (1349)
+--...+..-+-|-.....+.++..|+.-.-...+..+ .. +.-+.-+.+.-+|-.+.|.++.-.+.|+ .
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~---~l~~~s~il~~iLpc~s~~e~~~i~~~a-------~ 313 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RD---LLLYLSGILTAILPCLSDTEEMSIKEYA-------Q 313 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cc---hhhhhhhhhhhcccCCCCCccccHHHHH-------H
Confidence 32334444455566777889999999888777776432 22 3333444455555556677664222222 2
Q ss_pred hhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhh
Q 000696 1204 FMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1283 (1349)
Q Consensus 1204 lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~ 1283 (1349)
..+-.+..++...-.+ ..++|+..+.-+ ..|+.+...+-|-+|--.|-.+....|.+..
T Consensus 314 ~~n~~l~~l~s~~~~~--~~id~~~ii~vl-------------------~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLK--EEIDYGSIIEVL-------------------TKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred HHHHHHHHHHhhhhhc--cccchHHHHHHH-------------------HHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 2221222233221111 226666554333 3488888899999998888888888887766
Q ss_pred hhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcccc
Q 000696 1284 LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1325 (1349)
Q Consensus 1284 ~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1325 (1349)
... ..++..|.. -+.|++..|--.+-.-+..+.+.+++.
T Consensus 373 ~h~--~~if~tLL~-tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 373 VHN--DSIFLTLLK-TLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hhc--cHHHHHHHH-hhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 433 667888888 689999999888877777777666653
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.74 E-value=0.013 Score=44.13 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1291 VFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1291 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
+++.+.. +++||+|.||..|+++||.+.+.
T Consensus 1 llp~l~~-~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQ-LLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHH-HHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
Confidence 3566777 89999999999999999998875
No 64
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.68 E-value=0.077 Score=66.28 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=175.9
Q ss_pred ChHHHHHHHHH--HHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccch
Q 000696 951 EPLRAILTSFQ--AFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR 1026 (1349)
Q Consensus 951 ~P~~~aleAlk--~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R 1026 (1349)
++++...++.. .++ +.+.-++...|+.-.-=+ +...|..|.....+...+.-+ ...++..|+-.+....
T Consensus 234 n~~~~~~~~~~~~gff-~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~---- 306 (690)
T KOG1243|consen 234 NKLRFILECRLLGGFF-RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD---- 306 (690)
T ss_pred chhhHHHHHHhccccc-cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc----
Confidence 35555555443 222 233334445555422111 566777777665554433221 3344444444433333
Q ss_pred HHHHHHHHHhhhcC--CChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhH
Q 000696 1027 EAAAAALSEFVRYS--GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1103 (1349)
Q Consensus 1027 i~a~af~sELl~~~--~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1103 (1349)
++..|++=++..- ...+.....++-.|.+-++-++..||.+-|+++-+...+ .-..+-.++++.+..|+.|++..+
T Consensus 307 -a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~L 385 (690)
T KOG1243|consen 307 -AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATL 385 (690)
T ss_pred -cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHH
Confidence 5555666665532 112234455788999999999999999999999877655 334566889999999999999999
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc
Q 000696 1104 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1183 (1349)
Q Consensus 1104 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1183 (1349)
+..++..+..+...++...++.-++..--+++| |+...+|...-...|.++.
T Consensus 386 re~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~------------------------- 437 (690)
T KOG1243|consen 386 REQTLKSMAVLAPKLSKRNLNGELLRYLARLQP---DEHGGIRTNTTICLGKIAP------------------------- 437 (690)
T ss_pred HHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc---cccCcccccceeeeccccc-------------------------
Confidence 999999999999998887776666665555665 6667777666666666543
Q ss_pred cCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhH
Q 000696 1184 YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPII 1263 (1349)
Q Consensus 1184 ~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~I 1263 (1349)
+-.|.|++. ++. + -| ..-+++|.++-
T Consensus 438 -~l~~~~R~~------------------vL~-----------~-af-----------------------tralkdpf~pa 463 (690)
T KOG1243|consen 438 -HLAASVRKR------------------VLA-----------S-AF-----------------------TRALKDPFVPA 463 (690)
T ss_pred -ccchhhhcc------------------ccc-----------h-hh-----------------------hhhhcCCCCCc
Confidence 112223210 000 0 01 11457888888
Q ss_pred HHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcccc
Q 000696 1264 QANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1325 (1349)
Q Consensus 1264 R~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1325 (1349)
|.++++-.-...++++.+... ..+...+.- +.-||++.||..|-.++..+......+
T Consensus 464 R~a~v~~l~at~~~~~~~~va----~kIlp~l~p-l~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 464 RKAGVLALAATQEYFDQSEVA----NKILPSLVP-LTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hhhhhHHHhhcccccchhhhh----hhccccccc-cccCcccchhhHHHHHHHHHHhhhhhh
Confidence 888877555555666544443 446666777 889999999999999987766444333
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.67 E-value=0.036 Score=54.40 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH-hHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcch
Q 000696 1087 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL-NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1165 (1349)
Q Consensus 1087 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~-~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1165 (1349)
.+++.+++.|.+.+..+...|+.+|+++-...+.. ...+.- .+...+.+++.+.++.+|..|..+++.++....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~---- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE---- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH----
Confidence 36788888888888899999999999988653211 111111 444555667888999999999999999987321
Q ss_pred HHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhh
Q 000696 1166 EAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVA 1202 (1349)
Q Consensus 1166 ~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a 1202 (1349)
..-...+.. .+.-|+-+++|++..|++.+-.+|..++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111222223 3455555667778999999999988764
No 66
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.66 E-value=0.11 Score=66.90 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhhcccC----ccchHHHHHHHHHhhhc-CCC--------------hhcHHHHHHHHHHhhcCCCChhHHH
Q 000696 1007 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGG--------------FDSLLEQMVEALCRHVSDESPTVRG 1067 (1349)
Q Consensus 1007 ~~~i~~~L~~~L~s~~----~~~Ri~a~af~sELl~~-~~~--------------~~~l~~~~i~~L~~~l~D~~~~VR~ 1067 (1349)
-..++..+..+++++. ..-|.+|+.-++.+++. |.. ...+.+.+...|.......+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4566666666666543 23467788888888874 211 2345566677777777778889999
Q ss_pred HHhhhccCCcchhhhhhHHHHHHHHHhhccCC---ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC-CCCh
Q 000696 1068 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNV 1143 (1349)
Q Consensus 1068 lslrGLgnl~~~~v~~~~~~lL~all~~L~d~---d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~ 1143 (1349)
++||||||++. +..++.+..-+.+. ...++..|+.+|+++...- ...+..++..| |++ .|..
T Consensus 509 ~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I------~~n~~e~~ 574 (618)
T PF01347_consen 509 VYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI------FMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH------HH-TTS-H
T ss_pred HHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH------hcCCCCCh
Confidence 99999999986 34566666666665 3568888888888874432 33455555554 444 4668
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000696 1144 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1198 (1349)
Q Consensus 1144 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1198 (1349)
+||.+|+.++=.-. + .... ++.+.-.+- .|++.+|+.....+|
T Consensus 575 EvRiaA~~~lm~~~-----P-~~~~----l~~i~~~l~--~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLILMRCN-----P-SPSV----LQRIAQSLW--NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHHT---------HHH----HHHHHHHHT--T-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC-----C-CHHH----HHHHHHHHh--hCchHHHHHHHHHhc
Confidence 88888876544311 1 1222 223332222 477888887766555
No 67
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.39 Score=62.50 Aligned_cols=256 Identities=18% Similarity=0.192 Sum_probs=154.5
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccC-Cc--
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSS-SK-- 1120 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l-~~-- 1120 (1349)
.-+|.+++.|..+++|.+..||+-+.+|+|.++.+--..+..+++++.++.+...+ +..-..|+.+|+.+-.+= -.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 34577899999999999999999999999999877446678899999999666555 567778888888886530 00
Q ss_pred --CCcchhHHhHHhhhcCcCCCCC------hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000696 1121 --DAVEPILLNLSVRLRNLQVSMN------VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1192 (1349)
Q Consensus 1121 --~~~~~~l~~i~~~lrpffede~------~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1192 (1349)
.++.|+++. -=.||+.+ ..||.||-.+-=++++.-..+..+++.+++...|+---+ =|++..+|.
T Consensus 417 ~l~dVvplI~k-----aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al--FDrevncRR 489 (1133)
T KOG1943|consen 417 LLEDVVPLILK-----ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL--FDREVNCRR 489 (1133)
T ss_pred HHHHHHHHHHH-----HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh--cCchhhHhH
Confidence 012222211 11345443 789999988766666532233345566666555554443 499999999
Q ss_pred HHHHHHHhhhhhhh-----hhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCCh-hHHHH
Q 000696 1193 ACRNTLKQVAPFME-----IGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP-IIQAN 1266 (1349)
Q Consensus 1193 ack~tL~~~a~lL~-----~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~-~IR~~ 1266 (1349)
|+..||....--.+ -++-...+=+.... +. .-+.++|..+. +|++....++...+.-==+.|. .||.-
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~-rs----Ncy~~l~~~ia-~~~~y~~~~f~~L~t~Kv~HWd~~irel 563 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTN-RS----NCYLDLCVSIA-EFSGYREPVFNHLLTKKVCHWDVKIREL 563 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhh-hh----hHHHHHhHHHH-hhhhHHHHHHHHHHhcccccccHHHHHH
Confidence 99998876432111 12211111111110 11 12345555544 5676666666664443235674 48888
Q ss_pred HHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1267 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1267 A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
|++-+-.+....+ +... +.++.-+.. ..--+|+.-|..+.-|.|.+-
T Consensus 564 aa~aL~~Ls~~~p-k~~a----~~~L~~lld-~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 564 AAYALHKLSLTEP-KYLA----DYVLPPLLD-STLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHhhH-Hhhc----ccchhhhhh-hhcCCChHHhhhhHHHHHHHH
Confidence 8887777554443 3322 222233444 344577888876666665543
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.39 E-value=18 Score=49.68 Aligned_cols=474 Identities=13% Similarity=0.071 Sum_probs=228.1
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhh---cCcHHHHHHHHHHHHHHhhccCchhHH
Q 000696 746 SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVH---ITDKHLRLETLGAISCLAENTNSKIVF 822 (1349)
Q Consensus 746 ~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~---i~~~~~r~~~l~ai~~La~~h~~~vV~ 822 (1349)
+.-..++|...++..||-.++-.++-.+ ++.+.-+|.++.. -+.-.+|+.+++.++-.....++=..+
T Consensus 859 ~Vh~R~~DssasVREAaldLvGrfvl~~---------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i 929 (1692)
T KOG1020|consen 859 AVHGRLNDSSASVREAALDLVGRFVLSI---------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI 929 (1692)
T ss_pred HHHHhhccchhHHHHHHHHHHhhhhhcc---------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH
Confidence 3334445555555555555554444222 2233334444332 234567888888887777666553222
Q ss_pred HHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcc-cHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHH
Q 000696 823 NEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAV-LSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDIL 901 (1349)
Q Consensus 823 ~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~-l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 901 (1349)
..+ |. +|-+-+..|.. .-..+.+.++..+=..++...+. +
T Consensus 930 ~~~--------ca-------------kmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~------------------~ 970 (1692)
T KOG1020|consen 930 VDM--------CA-------------KMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQ------------------P 970 (1692)
T ss_pred HHH--------HH-------------HHHHHhccchhHHHHHHHHHHHHHhccCCCccccc------------------H
Confidence 222 11 24444444544 55566666666655555443321 1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHhhcchHHHHHHHhc-
Q 000696 902 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCECVGDLEMRKILARD- 979 (1349)
Q Consensus 902 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~~g~~~~~~~L~~~- 979 (1349)
-.|.-...|...+. ....+....++||+..++..-.-- ++.+...|.- ..++-.-.++...-.+++.. ++.+
T Consensus 971 ~~~~kI~~~~~vv~--~~~d~~~~~~eqLl~~ilk~~~~~---~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~e-v~~~~ 1044 (1692)
T KOG1020|consen 971 AKARKISLEVDVVM--SQVDLMNDWLEQLLDHILKFYLLK---TMKESVKPVALAKVTHVLNLLTHCLVEKISE-VESDD 1044 (1692)
T ss_pred HHHHhhHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHhh---hhhhhhhHHHHhhcchHHHHHHHHHHHHHHh-hhhHh
Confidence 11222222222222 233555678899998876543211 2222233421 11111111111111111111 1110
Q ss_pred -CCCCChhhHHHHHHHHHHHhhhcCchhHH-HHHHHHhhhhccc----CccchHHHHHHHHHhhhcC--CChhcHHHHHH
Q 000696 980 -GEQNDKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQ----QRFQREAAAAALSEFVRYS--GGFDSLLEQMV 1051 (1349)
Q Consensus 980 -g~W~~~e~~~~gV~lLAr~m~~~~~~~~~-~i~~~L~~~L~s~----~~~~Ri~a~af~sELl~~~--~~~~~l~~~~i 1051 (1349)
..=++...+..-+..|+- .+.-+|..+- .=+..|.|||.+. .+.+-+-.++++-|-.=.- .-.+.+++.+=
T Consensus 1045 ~~~~~~~~~~~~~lstL~~-FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLE 1123 (1692)
T KOG1020|consen 1045 MNEEESEVRLLAYLSTLFV-FSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLE 1123 (1692)
T ss_pred hhcccchhHHHHHHHHHHH-HHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 011145566666665553 3555665544 7778899999987 4444444444444422110 11233344444
Q ss_pred HHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHH
Q 000696 1052 EALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131 (1349)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~ 1131 (1349)
..|+..+---+.++-.-|+--+|.++.+ .- .+-.++..-.....+.+..
T Consensus 1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k----------------~~-~~~~~v~~cf~~~~k~le~-------------- 1172 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATK----------------RT-DGAKVVKACFSCYLKLLEV-------------- 1172 (1692)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhh----------------hc-cchHHHHHHHHHHHHHHHH--------------
Confidence 4444433222222211111122222110 00 0122333333333333322
Q ss_pred hhhcCcCCCC----ChHHHHHHHHHHHHhhccC-------CCcchH----HHHHHHHhhhhHHHHhccCCChhHHHHHHH
Q 000696 1132 VRLRNLQVSM----NVKMRRNAFAAFGALSNFG-------VGSQRE----AFLEQIHAMLPRLILHIYDDDLSVRQACRN 1196 (1349)
Q Consensus 1132 ~~lrpffede----~~~vR~aAi~LfG~L~~~~-------~~~~~~----~~~eQv~~~LvpLLlHL~D~~~~V~~ack~ 1196 (1349)
++.-++++ +...=.-++.+.|-+++++ +|+... ..++ ..+..|..|.++.+-.+++.+-.
T Consensus 1173 --~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e---~v~~lL~~f~k~~~~~lR~~al~ 1247 (1692)
T KOG1020|consen 1173 --IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKE---KVLILLMYFSKDKDGELRRKALI 1247 (1692)
T ss_pred --HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHH---HHHHHHHHHHHhhhhHHHHHHHH
Confidence 23333333 3222234577778888732 233322 3333 35667788899999999998888
Q ss_pred HHHhhhh----hhhh-hhhhhhccccCCCC---C-----------------------------------------CCChH
Q 000696 1197 TLKQVAP----FMEI-GVYGIFNSHCFNSD---H-----------------------------------------RSDYE 1227 (1349)
Q Consensus 1197 tL~~~a~----lL~~-~l~~lf~~~~~~~~---~-----------------------------------------~l~~~ 1227 (1349)
+|+..+. ++-. .+..++.+- +.++ . ..+-+
T Consensus 1248 ~Lg~~ci~hp~l~~~~~v~nly~~i-la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg 1326 (1692)
T KOG1020|consen 1248 NLGFICIQHPSLFTSREVLNLYDEI-LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSG 1326 (1692)
T ss_pred HHHHHHhhCchhhhhHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccc
Confidence 8887662 2222 332222221 1111 0 00112
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhH
Q 000696 1228 TFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1307 (1349)
Q Consensus 1228 ~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1307 (1349)
.+-++.|.. .++.|+.+.+.-+=+-+..+|.+|+..+-.+++..= +..-.-+..|+. |-.||.+..
T Consensus 1327 ~~s~~~~~~-------i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL------VhP~~cvPtLIA-L~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1327 MGSSDGVSA-------IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL------VHPVHCVPTLIA-LETDPSQAI 1392 (1692)
T ss_pred cccccchHH-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC------CCccchhhhhee-ecCChHHHH
Confidence 222222222 456788888887777889999999999987776331 122334677888 889999999
Q ss_pred HHHHHHHHHHHH-Hhcccc
Q 000696 1308 RATCSSSLGWLL-KSINSH 1325 (1349)
Q Consensus 1308 R~~Aa~aL~~l~-k~~~~~ 1325 (1349)
|..|-+-|..+. ||+-++
T Consensus 1393 r~~Ad~LL~eid~kY~gfv 1411 (1692)
T KOG1020|consen 1393 RHVADELLKEIDEKYEGFV 1411 (1692)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 999888887776 454443
No 69
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.37 E-value=0.51 Score=60.90 Aligned_cols=307 Identities=15% Similarity=0.179 Sum_probs=156.2
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHH-HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhh
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1083 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~ 1083 (1349)
..++++..|++.|++.+..-.+.++.|+-.|--......... ..++..|.+-+..++..++..++|-|.|++.+ .++.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 346788888899998888778888888888764433322222 33777888888889999999999999999875 3322
Q ss_pred --hHHHHHHHHHhhccCCCh-hHHHHHHHHHHHH---hccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhh
Q 000696 1084 --YATQVLSVILALLDDLDE-SVQLTAVSCLLTI---LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1084 --~~~~lL~all~~L~d~d~-~V~leAm~~L~~l---L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~ 1157 (1349)
-...++|.+...|.+.+. .+++..+.-|+.- =.....++.-+.++++ +++..++.+...++.+.-.++
T Consensus 367 ~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~------Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM------LLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH------HHhCCCccccHHHHHHHHHHh
Confidence 123356777777775432 2333222222210 0000111111222221 223333444444444444444
Q ss_pred cc-------CCCcchHHHHHH--------------------------HHhhhhHHHHhccC-CChhHHHHHHHHHHhhh-
Q 000696 1158 NF-------GVGSQREAFLEQ--------------------------IHAMLPRLILHIYD-DDLSVRQACRNTLKQVA- 1202 (1349)
Q Consensus 1158 ~~-------~~~~~~~~~~eQ--------------------------v~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a- 1202 (1349)
.. +.|..-+.+.+. ....+.||+-.+.. ++.+..-.|=.+|....
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 31 111111111111 12223333322322 25566666777776665
Q ss_pred hhhhh-hhh-h-----hhccccCCCCCCCChHHHHHHHHHHHHH--hCcchHHH-----HHHHHHHhhcCCC--hhHHHH
Q 000696 1203 PFMEI-GVY-G-----IFNSHCFNSDHRSDYETFVRDLTRQFVQ--HFPSRIDS-----YMGSTIQAFEAPW--PIIQAN 1266 (1349)
Q Consensus 1203 ~lL~~-~l~-~-----lf~~~~~~~~~~l~~~~f~~~l~k~L~~--~~~~~~~~-----~l~~~l~ylkS~~--~~IR~~ 1266 (1349)
+-++| .+- . .+.+. +.++ ..-++.+.+++..+.. ..++-+.. ++.+.+..|++-+ .++=-.
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~-L~~g--~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDL-LKPG--ASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHH-hCCC--CCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 33455 332 1 11121 2221 1123344444333321 11111111 2344444555544 223333
Q ss_pred HHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1267 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1267 A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
-+...+.++.+-+.... -+...++...|.. |.+|..+.||+.|..+|..+..+..
T Consensus 598 il~~f~~ll~h~~tr~~-ll~~~~~~~ylid-L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREV-LLKETEIPAYLID-LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHcChHHHHH-HHhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 34444455554332111 1233557788999 8999999999999999999886554
No 70
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.37 E-value=0.11 Score=59.12 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=87.0
Q ss_pred HHHHHHhhhhcccCc-cchHHHHHHHHHhhhcCCChhcHHHH--HHHHHHhhcCCCChhHHHHHhhhccCCcch-----h
Q 000696 1009 TICLILTKSINRQQR-FQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----H 1080 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~-~~Ri~a~af~sELl~~~~~~~~l~~~--~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-----~ 1080 (1349)
+-+..++.+|++..+ .-+-.|...++..-..+.. +..+.. .+..+.+-+.+|+|.||.-++.+|.|++.. +
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 334455555554433 2233333333333222322 222222 466777788999999999999999999853 6
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1081 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1081 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
++.|.+.++.-+.+. ..|+++.+.+++.|.++- ++ .+...++.+....+.+++...+..+|.-+..++-.|+.
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 778888888887774 347889988888888873 22 22233333333334455556666666666666666654
No 71
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.29 Score=60.49 Aligned_cols=248 Identities=17% Similarity=0.166 Sum_probs=147.9
Q ss_pred HHHHHHHhhhhcccCccchHHHHHHHHHhhhcC-C------ChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000696 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYS-G------GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1079 (1349)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~------~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~- 1079 (1349)
+.+.+...+.|++.++..|.+|+-.++=+-|-+ . .+..+.+.+...++..++|-+-.||+.|.+.||.+...
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 345566788889999999999975555444422 1 13456677889999999999999999999999988532
Q ss_pred -hh--hhhHHHHHH-------------HHHhhcc-----CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000696 1080 -HI--HQYATQVLS-------------VILALLD-----DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1138 (1349)
Q Consensus 1080 -~v--~~~~~~lL~-------------all~~L~-----d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1138 (1349)
++ .-+-+.++. .+++.-+ ..+++|.-|. .+.+..+-+--.-|-.+-.=|
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee----------~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE----------DDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh----------ccccccccccccccceeeeec
Confidence 11 001111111 2222210 0012233333 111111111111223334668
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccC
Q 000696 1139 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1218 (1349)
Q Consensus 1139 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~ 1218 (1349)
|||-.+||.+|..-|+.|+-...+ |-.. ++-=|+=-++|+-..|+-.|-+||..++..+..
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~-----FA~~---aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i----------- 443 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPG-----FAVR---ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI----------- 443 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC-----cHHH---HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee-----------
Confidence 999999999999999999974333 3333 333344456899999999999999998864221
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHH
Q 000696 1219 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1298 (1349)
Q Consensus 1219 ~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1298 (1349)
. ++-++.++..| .+..++||.++--+++.. ..++..+-.+=+..+...|..
T Consensus 444 ~-------eeql~~il~~L-------------------~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~k- 494 (823)
T KOG2259|consen 444 R-------EEQLRQILESL-------------------EDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGK- 494 (823)
T ss_pred c-------HHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhh-
Confidence 1 23444555444 445677888776655522 222333332333445555555
Q ss_pred hccCCChhHHHHHHH
Q 000696 1299 LSQSADAIVRATCSS 1313 (1349)
Q Consensus 1299 Ll~Dpdp~VR~~Aa~ 1313 (1349)
-=+|.|..-+|.+..
T Consensus 495 yPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 495 YPQDRDEILRCMGRI 509 (823)
T ss_pred CCCCcHHHHHHHHHH
Confidence 356888888876543
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.23 E-value=0.41 Score=61.55 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=125.8
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCCh
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1063 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1063 (1349)
+...=++|+--+-..|..+.. ++.++..+++...+.+-..+-. ++--+.+.+..+..+---.+|.+.+-+.||||
T Consensus 32 n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL---~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRL---LYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 455567777777777766555 7777777777766444332221 12222233333222222367899999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCCh
Q 000696 1064 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1143 (1349)
Q Consensus 1064 ~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~ 1143 (1349)
.+|.+|+|-||.+... +..+++++++...+.|.+.-|+-.|..++.++-+. +..-+... .....+.-+..|+++
T Consensus 107 ~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~--g~~~~l~~l~~D~dP 180 (757)
T COG5096 107 EIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHEL--GLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcc--cHHHHHHHHhhCCCc
Confidence 9999999999998754 34678899999999999999999999999999854 33322221 012223456779999
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000696 1144 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1187 (1349)
Q Consensus 1144 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1187 (1349)
.|-++|+..+-.+-. ....++...+...+..|.+-+.+.+
T Consensus 181 ~Vi~nAl~sl~~i~~----e~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 181 IVIANALASLAEIDP----ELAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hHHHHHHHHHHHhch----hhhhhHHHHHHHHhhhccchhhhhh
Confidence 999999998888765 1344555556666665555444443
No 73
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=11 Score=46.50 Aligned_cols=372 Identities=17% Similarity=0.179 Sum_probs=215.2
Q ss_pred HHHHHHHHHhhhcCCCCcccHHHHHHHHH-hhHHHhcChhHHhhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000696 543 NLITLLCAILLTSGEDGRSRADQLLHILR-QIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 621 (1349)
Q Consensus 543 aL~~lL~~ll~~~~~d~~~~~~~L~~il~-~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 621 (1349)
.+.++...++.++. .+++..+++ ....++.|.....|+-++--.+.+-- | ||
T Consensus 23 elEk~Vk~l~~~~~------~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i----------a-Lg---------- 75 (675)
T KOG0212|consen 23 ELEKLVKDLVNNND------YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAI----------A-LG---------- 75 (675)
T ss_pred HHHHHHHHHHccCc------HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHH----------H-hc----------
Confidence 34566666665543 677777777 44567777777777644332221111 0 00
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhh
Q 000696 622 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 701 (1349)
Q Consensus 622 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 701 (1349)
.+ ....+-.++--..++|.|++..||-.|-|.+|-+-.++. |..
T Consensus 76 ---------~~----------~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k------~~v----------- 119 (675)
T KOG0212|consen 76 ---------IK----------DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK------GEV----------- 119 (675)
T ss_pred ---------cc----------cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc------cCc-----------
Confidence 00 112344555566788999999999999998887655532 111
Q ss_pred hhhcHHHHHHhccCCCCChhHHHHHHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHh----hhcccc
Q 000696 702 LSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVT----KRGNEL 777 (1349)
Q Consensus 702 l~~l~d~~~~l~~~~~~~~~~~~~~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~----~rg~~L 777 (1349)
...|+.|..++|+. ..|+ .+.+++++.++.-++| ++.+.+
T Consensus 120 -------------------~~~Fn~iFdvL~kl----------------saDs-d~~V~~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 120 -------------------LVYFNEIFDVLCKL----------------SADS-DQNVRGGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred -------------------ccchHHHHHHHHHH----------------hcCC-ccccccHHHHHHHHHHHhcccccccc
Confidence 00111222222111 1232 2345666666655554 455556
Q ss_pred cccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcC
Q 000696 778 SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH 857 (1349)
Q Consensus 778 ~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d 857 (1349)
..++++..+..++..+ .+.+|+.++.=++.|-..+.-+.+ +.+ |-=+|-++..|+..
T Consensus 164 ---sL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~-~yl------------------~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 164 ---SLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMI-SYL------------------PSLLDGLFNMLSDS 220 (675)
T ss_pred ---CHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHH-hcc------------------hHHHHHHHHHhcCC
Confidence 3888999999988877 678999999999999888766554 322 01123478888876
Q ss_pred cccH----HHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHH---HHHHHHHHHHhcCCcchHHHHHHhhHHH
Q 000696 858 AVLS----FLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQ---AAILALTAFFRGGGKVGKKAVEKSYAPV 930 (1349)
Q Consensus 858 ~~l~----~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~l---aA~~aL~Ell~~~~~~~~~av~~~fp~L 930 (1349)
..-. ...|..+|.-+.+.|..-+-++..+.. .++-++..|. .|.-=+.|+.+.+ +..+..++|.+
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl----v~~l~ss~~~iq~~al~Wi~efV~i~----g~~~l~~~s~i 292 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL----VPHLQSSEPEIQLKALTWIQEFVKIP----GRDLLLYLSGI 292 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc----cccccCCcHHHHHHHHHHHHHHhcCC----Ccchhhhhhhh
Confidence 6444 455566777777777653311111111 1122222333 4455555666644 45677777777
Q ss_pred HHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHhhhcCchhHHHH
Q 000696 931 LAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTI 1010 (1349)
Q Consensus 931 f~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i 1010 (1349)
|.++|--+++.-.. + +-+ .+ ..-...+.+.+.... ..++ -..++|
T Consensus 293 l~~iLpc~s~~e~~------~----i~~-~a----~~~n~~l~~l~s~~~---~~~~-----------------id~~~i 337 (675)
T KOG0212|consen 293 LTAILPCLSDTEEM------S----IKE-YA----QMVNGLLLKLVSSER---LKEE-----------------IDYGSI 337 (675)
T ss_pred hhhcccCCCCCccc------c----HHH-HH----HHHHHHHHHHHhhhh---hccc-----------------cchHHH
Confidence 77665444221111 0 000 00 000001111111100 0000 246788
Q ss_pred HHHHhhhhcccCccchHHHHHHHHHhhhcCCCh-hcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000696 1011 CLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1349)
Q Consensus 1011 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1349)
++-+.+++.+..+.-|+++.-.+.-+.++.... -.-.+++..+|.+.+.|++..|-.++|.=+++++..
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888877764332 222467889999999999999999999999999865
No 74
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.09 E-value=1.6 Score=51.41 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=133.9
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC-cCCcchh
Q 000696 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPI 1126 (1349)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~ 1126 (1349)
-....+.|-+...|.-+|+++-++..+ .+.....+++++++.++......-..-|..+++-+.=.++ ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 334455777799999999999877533 5667778999999999987655444456666666644444 2334445
Q ss_pred HHhHHhhhcCcCCCC--ChHHHHHHHHHHHHhhccCCCcchHHHHH--HHHhhhhHHHHhccCCChhHHHHHHHHHHhhh
Q 000696 1127 LLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLE--QIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1202 (1349)
Q Consensus 1127 l~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~~~~~~~~e--Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1202 (1349)
+-.+-..|++...|. ...+|.+++..+|-+.-++.+. .+...+ +.+..+.....+=.|.+..++.+...+--.++
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 555555555555543 3578999999999887655443 333321 44454444444434444222222222222333
Q ss_pred hhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCch-
Q 000696 1203 PFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD- 1280 (1349)
Q Consensus 1203 ~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~- 1280 (1349)
.+-.| .+-..... ..+. +. +...+......+.|+...||-+|.-.|..+.-....
T Consensus 206 AL~aW~lLlt~~~~-----------~~~~-~~-----------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 206 ALSAWALLLTTLPD-----------SKLE-DL-----------LEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred HHHHHHHHHhcCCH-----------HHHH-HH-----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 44455 33322111 0111 11 112233334588999999999999999987553332
Q ss_pred -hhhhhccHHHHHHHHHHHhccCCChhHHH
Q 000696 1281 -QHILSLFYTQVFGLLVVKLSQSADAIVRA 1309 (1349)
Q Consensus 1281 -~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1309 (1349)
+.....+.+.++..+.. |-.|..-.+-+
T Consensus 263 ~~~~~~~~~~~l~~~l~~-La~dS~K~~sK 291 (309)
T PF05004_consen 263 EEDFLYEDMEELLEQLRE-LATDSSKSRSK 291 (309)
T ss_pred cccccccCHHHHHHHHHH-HHHhccCccch
Confidence 12233577888888888 77776444433
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.09 E-value=3.2 Score=50.94 Aligned_cols=310 Identities=12% Similarity=0.118 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHHHhhhcCch-hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1062 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1062 (1349)
++-.-+.++++|.+. +.+.. -.-.++.++..-..=.+.--.+.-+-..++++... ..++.++.-.|..|++|--
T Consensus 203 ~~isqYHalGlLyq~--kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n---~q~~~q~rpfL~~wls~k~ 277 (898)
T COG5240 203 NPISQYHALGLLYQS--KRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN---SQALLQLRPFLNSWLSDKF 277 (898)
T ss_pred ChHHHHHHHHHHHHH--hcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC---hHHHHHHHHHHHHHhcCcc
Confidence 445556678888873 33221 12233333332221111111333444556666643 2345667789999999976
Q ss_pred hhHHHHHhhhccCCcchh-hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCC
Q 000696 1063 PTVRGLCLRGLVQIPSIH-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1141 (1349)
Q Consensus 1063 ~~VR~lslrGLgnl~~~~-v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede 1141 (1349)
..|-.-+.|.+..++... ...+..+.+.++-..|.......+..||+.|.++-..-+. .++..= ..+-.+..|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~vcN----~evEsLIsd~ 352 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVSVCN----KEVESLISDE 352 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eeeecC----hhHHHHhhcc
Confidence 666666666554443321 1234466667777777665666778899999998765432 232221 2235677888
Q ss_pred ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCC
Q 000696 1142 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNS 1220 (1349)
Q Consensus 1142 ~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~ 1220 (1349)
|-.+---||. .|.+.|....- +.+.+.++..+--+.|.=.-|+--+-++|+-..|. +| ..-..+..-+.+
T Consensus 353 Nr~IstyAIT---tLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k~~s~l~FL~~~L~~- 423 (898)
T COG5240 353 NRTISTYAIT---TLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-KKLSYLDFLGSSLLQ- 423 (898)
T ss_pred cccchHHHHH---HHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-HHHHHHHHHHHHHHh-
Confidence 8776666665 45554433333 33444455555556666555555555566555543 34 333333333233
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000696 1221 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1300 (1349)
Q Consensus 1221 ~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1300 (1349)
++++.|-..+-+...-.++.-|+.-..-+...-.|..+.+-+ .-++..+|.++...|.......+.-.+++.++-
T Consensus 424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL--- 498 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLIL--- 498 (898)
T ss_pred cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---
Confidence 356766656666666778888888888888888888776542 447889999999888666555677888998875
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 000696 1301 QSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1301 ~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+...||..|.+||..+.
T Consensus 499 --EN~ivRsaAv~aLskf~ 515 (898)
T COG5240 499 --ENNIVRSAAVQALSKFA 515 (898)
T ss_pred --hhhHHHHHHHHHHHHhc
Confidence 78999999999987776
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=17 Score=46.79 Aligned_cols=227 Identities=15% Similarity=0.149 Sum_probs=121.9
Q ss_pred HHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhH
Q 000696 851 FHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYA 928 (1349)
Q Consensus 851 W~al~~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp 928 (1349)
--++|. .+++++.+...+-+.|+.+-++ +.=-|+.||.+-+..+| +.-+-....|.
T Consensus 128 L~alg~i~s~EmardlapeVe~Ll~~~~~~--------------------irKKA~Lca~r~irK~P--~l~e~f~~~~~ 185 (866)
T KOG1062|consen 128 LCALGNICSPEMARDLAPEVERLLQHRDPY--------------------IRKKAALCAVRFIRKVP--DLVEHFVIAFR 185 (866)
T ss_pred HHHhhccCCHHHhHHhhHHHHHHHhCCCHH--------------------HHHHHHHHHHHHHHcCc--hHHHHhhHHHH
Confidence 444444 6778888888888887775544 33458999999999998 43333333333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCh----HH---HHHHHHHHHHHhhcchHHHHHHHh--cCCCCChhhHHHHHH------
Q 000696 929 PVLAALTLQLGSCHGLASSGQHEP----LR---AILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIG------ 993 (1349)
Q Consensus 929 ~Lf~aLL~ql~~~~~~~~~~~~~P----~~---~aleAlk~ll~~~g~~~~~~~L~~--~g~W~~~e~~~~gV~------ 993 (1349)
+++. -= -||+-..+ +.+ |. .+++-||. +++. .+..|+. .++.. +|.=+.||.
T Consensus 186 ~lL~----ek--~hGVL~~~-l~l~~e~c~~~~~~l~~fr~---l~~~--lV~iLk~l~~~~ys-peydv~gi~dPFLQi 252 (866)
T KOG1062|consen 186 KLLC----EK--HHGVLIAG-LHLITELCKISPDALSYFRD---LVPS--LVKILKQLTNSGYS-PEYDVHGISDPFLQI 252 (866)
T ss_pred HHHh----hc--CCceeeeH-HHHHHHHHhcCHHHHHHHHH---HHHH--HHHHHHHHhcCCCC-CccCccCCCchHHHH
Confidence 3222 11 23331111 111 22 24444553 3222 2444543 22322 222222221
Q ss_pred ---HHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcC---CChhcHHHHHHHHHHhhcCCCChhHHH
Q 000696 994 ---DVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHVSDESPTVRG 1067 (1349)
Q Consensus 994 ---lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~---~~~~~l~~~~i~~L~~~l~D~~~~VR~ 1067 (1349)
.+-|-+-+.. +.....|+-++--.-..-|..|=++=|++-|=+..- .....+..-.+|.|.+-+.+++-.+|=
T Consensus 253 ~iLrlLriLGq~d-~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 253 RILRLLRILGQND-ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceee
Confidence 1334444433 345555655555555555666666667777755531 123445555677777777777777777
Q ss_pred HHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 000696 1068 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1349)
Q Consensus 1068 lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~ 1117 (1349)
++|.+|+..-.. -+.+|+.++ +++|+|.|..+..+||.-+-.+++.
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 777777755321 345555443 4455666777777777766666653
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=5.8 Score=50.19 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=117.0
Q ss_pred ccCCCCchh------HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhc
Q 000696 841 LRGGWPMQD------AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRG 914 (1349)
Q Consensus 841 L~~~lP~d~------~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~ 914 (1349)
|+.+-|+-| +++.+-.-|.-.+.-++.|-++|...-| -+--||++.+||+-+-
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp---------------------~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDP---------------------SVVSAAVSVICELARK 211 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCc---------------------hHHHHHHHHHHHHHhh
Confidence 577788877 6888888888888888888887532211 1123899999998775
Q ss_pred CCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHH
Q 000696 915 GGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGD 994 (1349)
Q Consensus 915 ~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~l 994 (1349)
+ |+=+ +..|-.=+|-+-..++.|-..+.+..-|...
T Consensus 212 n------------Pkny---------------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLt----------- 247 (877)
T KOG1059|consen 212 N------------PQNY---------------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALT----------- 247 (877)
T ss_pred C------------Cccc---------------------ccccHHHHHHHhccCCCeehHHHHHHHhhcc-----------
Confidence 4 1100 1123344555556677887777666544332
Q ss_pred HHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcC-------C--ChhcHHHHHHHHHHhhcCCCChhH
Q 000696 995 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-------G--GFDSLLEQMVEALCRHVSDESPTV 1065 (1349)
Q Consensus 995 LAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-------~--~~~~l~~~~i~~L~~~l~D~~~~V 1065 (1349)
..-|..-+.++.-+...+ ++.+|+..+-|=+|.- + .......-.+..|..-+.|+++..
T Consensus 248 ------plEPRLgKKLieplt~li------~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNL 315 (877)
T KOG1059|consen 248 ------PLEPRLGKKLIEPITELM------ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNL 315 (877)
T ss_pred ------ccCchhhhhhhhHHHHHH------HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccH
Confidence 111211111211111111 2233444444444321 0 111122335667777789999999
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 000696 1066 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1349)
Q Consensus 1066 R~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~ 1116 (1349)
+=++|-+++.++.-+- ..++.-.+-++.+|+|+|+.|+++|+.-|--++.
T Consensus 316 KYlgLlam~KI~ktHp-~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 316 KYLGLLAMSKILKTHP-KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhCH-HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999998875321 1123335667888999999999999988776664
No 78
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=1.1 Score=56.41 Aligned_cols=260 Identities=16% Similarity=0.143 Sum_probs=141.0
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhccc---CccchHHHHHHHH-HhhhcCCChhcHHHHHHHHHHh
Q 000696 981 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ---QRFQREAAAAALS-EFVRYSGGFDSLLEQMVEALCR 1056 (1349)
Q Consensus 981 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~---~~~~Ri~a~af~s-ELl~~~~~~~~l~~~~i~~L~~ 1056 (1349)
.|-+..+-+.-.+..|.-=++|++. ..+-++.+-|+|-+. ...+.--+ |+++ .|+.-... +.+++.|.+
T Consensus 348 ~WlskAtNWaKFtAtAsLGvIH~G~-~~~~~~ll~pYLP~~~~~~s~y~EGG-alyAlGLIhA~hG-----~~~~~yL~~ 420 (929)
T KOG2062|consen 348 DWLSKATNWAKFTATASLGVIHRGH-ENQAMKLLAPYLPKEAGEGSGYKEGG-ALYALGLIHANHG-----RGITDYLLQ 420 (929)
T ss_pred hHHhhcchHhhhhhhhhcceeeccc-cchHHHHhhhhCCccCCCCCCccccc-hhhhhhccccCcC-----ccHHHHHHH
Confidence 4654444444444455544667764 333445555666552 22222222 2332 45543322 225678888
Q ss_pred hcCC-CChhHHHHHhhhcc--CCcchhhhhhHHHHHHHHHhhccCCChhHHHHH--------------------------
Q 000696 1057 HVSD-ESPTVRGLCLRGLV--QIPSIHIHQYATQVLSVILALLDDLDESVQLTA-------------------------- 1107 (1349)
Q Consensus 1057 ~l~D-~~~~VR~lslrGLg--nl~~~~v~~~~~~lL~all~~L~d~d~~V~leA-------------------------- 1107 (1349)
++++ +++.||.-++-||| +|+.... .+.+.+-.-|+. |+.|.-||
T Consensus 421 ~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-----eiYe~lKevLy~-D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ 494 (929)
T KOG2062|consen 421 QLKTAENEVVRHGACLGLGLAGMGSANE-----EIYEKLKEVLYN-DSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQ 494 (929)
T ss_pred HHHhccchhhhhhhhhhccchhcccccH-----HHHHHHHHHHhc-cchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhh
Confidence 8876 48899999999888 4444321 112222222222 22222222
Q ss_pred -----------HHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhh
Q 000696 1108 -----------VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML 1176 (1349)
Q Consensus 1108 -----------m~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~L 1176 (1349)
--+++-++-.. +++..++.- .+..|.++-+|.+-+...+- ++++...- ..
T Consensus 495 ETQHeki~RGl~vGiaL~~ygr-qe~Ad~lI~-------el~~dkdpilR~~Gm~t~al--Ay~GTgnn---------ka 555 (929)
T KOG2062|consen 495 ETQHEKIIRGLAVGIALVVYGR-QEDADPLIK-------ELLRDKDPILRYGGMYTLAL--AYVGTGNN---------KA 555 (929)
T ss_pred hhhHHHHHHHHHHhHHHHHhhh-hhhhHHHHH-------HHhcCCchhhhhhhHHHHHH--HHhccCch---------hh
Confidence 11222222111 112222222 23445677888776644432 33333232 33
Q ss_pred hHHHHhc--cCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000696 1177 PRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1254 (1349)
Q Consensus 1177 vpLLlHL--~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ 1254 (1349)
|.=|||. .|.|.+|+.++-.|++-+. +.| . +-.-.+.. .
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl---------------~~d-p-----~~~~s~V~------------------l 596 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVL---------------FRD-P-----EQLPSTVS------------------L 596 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeE---------------ecC-h-----hhchHHHH------------------H
Confidence 5556675 7999999999988876533 111 1 11111111 2
Q ss_pred hhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1255 AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1255 ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
..+|-++++|..||+-+|...-.... ...++-|+. |-+||...||..|-.|++.+.-
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLep-l~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEP-LTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhh-hhcChHHHHHHHHHHHHHHHHH
Confidence 34567899999999999966554443 334555777 8899999999999999998763
No 79
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.76 E-value=2.8 Score=48.12 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=153.3
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC--CCChHH-------------HHHHH
Q 000696 1086 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--SMNVKM-------------RRNAF 1150 (1349)
Q Consensus 1086 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe--de~~~v-------------R~aAi 1150 (1349)
+++.=+..+.|+...+..-++|+..|.+++.+++-.+ +-..+.....+|--. ..-+.+ -..++
T Consensus 6 pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~--~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDD--PDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 6677777788887788999999999999999987543 222333344455442 122333 34678
Q ss_pred HHHHHhhccC----CCcchHHHHHHHHhhhhHHHHhccCCCh----hHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCC
Q 000696 1151 AAFGALSNFG----VGSQREAFLEQIHAMLPRLILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1221 (1349)
Q Consensus 1151 ~LfG~L~~~~----~~~~~~~~~eQv~~~LvpLLlHL~D~~~----~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~ 1221 (1349)
.++..|...- .|.....+.-.+..+++-++.|+.+++| .-+..+..++...|.--+. .+..++...+ .+
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya--~~ 161 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYA--KG 161 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHH--hc
Confidence 8888888741 1222336777899999999999999992 4556677888888876666 6666555432 12
Q ss_pred CCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000696 1222 HRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1300 (1349)
Q Consensus 1222 ~~l~~~~f~~~l~k~L~~~~-~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1300 (1349)
+--+-++|++.+++++-+.| |+.-..-+.=.++.+.+.-+-+|......+-.++++.+.+.- .+ .+++..+.+ ++
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~-~dlispllr-lL 237 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HG-ADLISPLLR-LL 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cc-hHHHHHHHH-Hh
Confidence 22334899999999999988 787666666677888888889999999999999998875532 44 346666777 45
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 000696 1301 QSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1301 ~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+.+ .+.+||..|.
T Consensus 238 ~t~------~~~eAL~VLd 250 (262)
T PF14225_consen 238 QTD------LWMEALEVLD 250 (262)
T ss_pred CCc------cHHHHHHHHH
Confidence 543 4566666654
No 80
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.97 Score=56.19 Aligned_cols=291 Identities=13% Similarity=0.058 Sum_probs=161.2
Q ss_pred CchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhc--CCCh-hcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000696 1003 RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1349)
Q Consensus 1003 ~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1349)
.......|.-+..++++. +..+.+.|. ..-+++.. +... ...+....++=..+..+.+..+|-.++.-.++++..
T Consensus 111 ~~~s~d~I~~~~~~~lr~-e~~~~vLa~-~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~ 188 (823)
T KOG2259|consen 111 ENGSTDAISDYASLELRA-ECSDHVLAQ-YLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVS 188 (823)
T ss_pred ccCchhHHHHHHHHhhcc-cchhHHHHH-HHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccC
Confidence 334566677777777663 333433332 22223321 2211 111222334445566788888999999988888753
Q ss_pred --hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhh
Q 000696 1080 --HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1080 --~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~ 1157 (1349)
.+..-.+.+..++..-..|.|..|.-.|+.+|-.+-+.. .++.. +-.+......|++++||.+|+.|.--.+
T Consensus 189 ~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~---~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 189 PSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKA---CYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred CCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHH---HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333344556666777778888887777777665554411 12222 2233345788999999999988755555
Q ss_pred ccCCC-----cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhcc-----------------
Q 000696 1158 NFGVG-----SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNS----------------- 1215 (1349)
Q Consensus 1158 ~~~~~-----~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~----------------- 1215 (1349)
+.+.+ .....+.+-++..+..- +.|-+-.|+-.+..+|+...+...-.+.+.+.|
T Consensus 263 n~~p~~~e~e~~e~kl~D~aF~~vC~~---v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk 339 (823)
T KOG2259|consen 263 NRCPAPLERESEEEKLKDAAFSSVCRA---VRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK 339 (823)
T ss_pred hcCCCcccchhhhhhhHHHHHHHHHHH---HhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH
Confidence 53322 22334455555555443 468899999888888887776544333332222
Q ss_pred -----ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHH----HHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhc
Q 000696 1216 -----HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG----STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL 1286 (1349)
Q Consensus 1216 -----~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~----~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~ 1286 (1349)
--|..|++++.+.=-.+ ...+..++.-+ .-+.=|.+.--++|.||+.-.+.+....|.=-
T Consensus 340 ~l~s~GewSsGk~~~advpsee-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA---- 408 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEE-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA---- 408 (823)
T ss_pred HHHhcCCcccCccccccCchhh-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----
Confidence 22333333211000000 00000110000 00112344456789999988888888776222
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000696 1287 FYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1287 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
+..+.-|.+ |..|+...||-.|--||..+
T Consensus 409 --~~aldfLvD-MfNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 409 --VRALDFLVD-MFNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred --HHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 233445777 88899999998888775444
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.67 E-value=0.97 Score=59.57 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=145.9
Q ss_pred hHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc-------chhhhhhHHHHHHHHHhhccC
Q 000696 1026 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP-------SIHIHQYATQVLSVILALLDD 1098 (1349)
Q Consensus 1026 Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~-------~~~v~~~~~~lL~all~~L~d 1098 (1349)
++.|.-.+.+|-..- ..+..++.++-.+.--+.|+.+.||..|+..|..+. ....+-+.++++|-+-..+.|
T Consensus 440 K~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 556665555554432 334556777777777789999999999999887542 235677889999999999988
Q ss_pred CC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc--CCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 000696 1099 LD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL--QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1175 (1349)
Q Consensus 1099 ~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf--fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~ 1175 (1349)
.+ ..|+..=...|+.+-.. ..-++..++++|-- .++++.+ ....-.......++.+-|-+.
T Consensus 519 ~~~~~vRiayAsnla~LA~t------A~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKT------AYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred CccceehhhHHhhHHHHHHH------HHHHHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHHHHH
Confidence 44 34555545555555432 23356677776654 5555555 111111122345565556666
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000696 1176 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1255 (1349)
Q Consensus 1176 LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~y 1255 (1349)
.+.|+ .|+.+-|+++=-..+..++.|+|- .-.+ +..++....|
T Consensus 583 v~sLl---sd~~~~Vkr~Lle~i~~LC~FFGk--------------------------------~ksN--D~iLshLiTf 625 (1431)
T KOG1240|consen 583 VSSLL---SDSPPIVKRALLESIIPLCVFFGK--------------------------------EKSN--DVILSHLITF 625 (1431)
T ss_pred HHHHH---cCCchHHHHHHHHHHHHHHHHhhh--------------------------------cccc--cchHHHHHHH
Confidence 66655 488888877655555544444322 1100 1123444568
Q ss_pred hcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhccc
Q 000696 1256 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1324 (1349)
Q Consensus 1256 lkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1324 (1349)
+++-.+.+|++=--=|-++.-+...+-. .|.+..-|+. =+.|+++.|=..|-+++.-|.|..+.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~----seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSV----SEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeH----HHHHHHHHHH-hccCcchhhHHHHHHHHHHHHHhccc
Confidence 8888888998522112111122221111 1557777777 58899999999999999998876553
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.65 E-value=0.45 Score=57.06 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=137.6
Q ss_pred CChhhHHHHHHHHHHHhhhcCc----hhHHHHHHHHhhhhcc-cCccchHHHHHHHHHhhhcCCCh-hcHHHHHHHHHHh
Q 000696 983 NDKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCR 1056 (1349)
Q Consensus 983 ~~~e~~~~gV~lLAr~m~~~~~----~~~~~i~~~L~~~L~s-~~~~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L~~ 1056 (1349)
+..+..-.|...|-..++.... +++..|+..++-.|.. .++..|..|.-.+.|.+.+.... ..--+-++...++
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3445556777777777777633 3588999999999988 77889999999999999876431 1112445666677
Q ss_pred hcCCCChhHHHHHhhhcc-CCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHH
Q 000696 1057 HVSDESPTVRGLCLRGLV-QIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131 (1349)
Q Consensus 1057 ~l~D~~~~VR~lslrGLg-nl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~ 1131 (1349)
..+|+.+.|-..|-.... -++.+ .+.. +-+.++. .|++...-++..+.++.+.++.+.+..++..|+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~----i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN----ISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHH----HhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 778887766555555432 22222 3322 2333333 578899999999999999999999999999999
Q ss_pred hhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHH
Q 000696 1132 VRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1180 (1349)
Q Consensus 1132 ~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLL 1180 (1349)
.-+-.-|+..+..||.+|+.-+=++.+..++...++-.+|+-.+-.-|+
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 9999999999999999999988888876655666676666555444443
No 83
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.4 Score=53.19 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=101.4
Q ss_pred hhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHH-HH
Q 000696 1015 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSV-IL 1093 (1349)
Q Consensus 1015 ~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~a-ll 1093 (1349)
..+|+|+.-+.+.++-.|++=|++.. ..+.+-+++.+.+-+...||+.-.+||.-+||++...+..-...=++. ++
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n---~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN---SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc---hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 46777888888888888888888865 456677888899999999999999999999999986443222222232 23
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC
Q 000696 1094 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1094 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1161 (1349)
+| +..+-|.-.|..+|-+++..-+ +-+.+- .-+.|+-.+.+|..-.|=.+|+.+.-.+++.-.
T Consensus 157 S~--~~~~~vkqkaALclL~L~r~sp-Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 157 SG--SSMDYVKQKAALCLLRLFRKSP-DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred CC--cchHHHHHHHHHHHHHHHhcCc-cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 32 1123488889999999998743 222221 346777889999999999999999999988433
No 84
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=26 Score=47.13 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=134.3
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc--
Q 000696 1081 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-- 1158 (1349)
Q Consensus 1081 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~-- 1158 (1349)
+..+...+-+.+.+++++....+...+..+|..|++.++.+....+.-.|..-|-.. .+.+..-|..||.++=.+++
T Consensus 691 ~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 691 VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHH
Confidence 345566777888888888888999999999999999998777777777777777776 89999999999999887773
Q ss_pred -c-CCCcchHHHHHHHHhhhhHHHHhc-cCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHH
Q 000696 1159 -F-GVGSQREAFLEQIHAMLPRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTR 1235 (1349)
Q Consensus 1159 -~-~~~~~~~~~~eQv~~~LvpLLlHL-~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k 1235 (1349)
+ -.|.++ .+.+.+..++.+--. --+.+ ...|.. +..+... +++. ...++
T Consensus 770 ~~~d~g~e~---~~~~lnefl~~Isagl~gd~~--~~~as~-Ivai~~i--------l~e~----~~~ld---------- 821 (1176)
T KOG1248|consen 770 SSLDDGNEP---ASAILNEFLSIISAGLVGDST--RVVASD-IVAITHI--------LQEF----KNILD---------- 821 (1176)
T ss_pred hhhcccccc---hHHHHHHHHHHHHhhhcccHH--HHHHHH-HHHHHHH--------HHHH----hcccc----------
Confidence 1 122222 122333333333221 11111 222221 2222211 1110 00010
Q ss_pred HHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 000696 1236 QFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1315 (1349)
Q Consensus 1236 ~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1315 (1349)
-+.+..++.+...|+.|..+.|+.+|+-|+--++.-+|.... ....+++...+-. |.+|----||.+.-.=|
T Consensus 822 ------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~~LL~sll~-ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 822 ------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLEELLPSLLA-LSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred ------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHHHHHHHHHH-HHHhhhHHHHHHHHHHH
Confidence 123445677778899999999999999999988888885554 3456788888888 89999999998877766
Q ss_pred HHHH
Q 000696 1316 GWLL 1319 (1349)
Q Consensus 1316 ~~l~ 1319 (1349)
..|.
T Consensus 894 ekLi 897 (1176)
T KOG1248|consen 894 EKLI 897 (1176)
T ss_pred HHHH
Confidence 6665
No 85
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.25 E-value=18 Score=44.42 Aligned_cols=325 Identities=18% Similarity=0.147 Sum_probs=184.0
Q ss_pred HHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcch-HHHHHHhhHHH
Q 000696 852 HAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVG-KKAVEKSYAPV 930 (1349)
Q Consensus 852 ~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~-~~av~~~fp~L 930 (1349)
-+++.++.+...+..+|+.+|......+. ....+.++..+|+.++....... .....++|.+.
T Consensus 27 ~~ls~~~~i~~~~~~~ll~kl~~~~~~~~----------------~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~ 90 (415)
T PF12460_consen 27 AALSTSPQILETLSIRLLNKLSIVCQSES----------------SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRI 90 (415)
T ss_pred HHHHCChhHHHHHHHHHHHHHHHHhcCCC----------------ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhH
Confidence 34456888888888888888876543211 01346788899999988763222 23566666765
Q ss_pred HHHHHHHhhhcccCCCCCCCCh-----HHHHHHHHHHHHHhhcchHHHHHHHh-------cCCCC-----ChhhHHHHHH
Q 000696 931 LAALTLQLGSCHGLASSGQHEP-----LRAILTSFQAFCECVGDLEMRKILAR-------DGEQN-----DKEKWINLIG 993 (1349)
Q Consensus 931 f~aLL~ql~~~~~~~~~~~~~P-----~~~aleAlk~ll~~~g~~~~~~~L~~-------~g~W~-----~~e~~~~gV~ 993 (1349)
+.-.+......-.....+ .++ .+..+...-..+......++.+.+-. ...+. ..+.-..-+.
T Consensus 91 lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHH
Confidence 555444443322211111 111 11111111111111222222211110 01111 1112334444
Q ss_pred HHHHHhhhcCc----hhHHHHHHHHhhhhccc-CccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhc-CCCChhHHH
Q 000696 994 DVAGCVSIKRP----KEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPTVRG 1067 (1349)
Q Consensus 994 lLAr~m~~~~~----~~~~~i~~~L~~~L~s~-~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l-~D~~~~VR~ 1067 (1349)
+.+..++--++ +....++..++....+. .+..|..+.-.++-++|...... .++..++.+.... ...++.-|.
T Consensus 170 l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 170 LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hHHHHHHHHHhhhcccCCcchhH
Confidence 45554443221 35666777777775554 47779999999999999843322 3445555555555 667778888
Q ss_pred HHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc-------CCcc-----hhHHhHHh
Q 000696 1068 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-------DAVE-----PILLNLSV 1132 (1349)
Q Consensus 1068 lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~-------~~~~-----~~l~~i~~ 1132 (1349)
-+++.++++..+ +.++....+++.++..|++ +.+-..|..+++-++...+. ..++ .++..+..
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 888988888765 4456677788889998886 55566666666666554211 1111 24455566
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHh
Q 000696 1133 RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQ 1200 (1349)
Q Consensus 1133 ~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~ 1200 (1349)
++-..|.+-+++.|..-..++..+.+... +..+..++- .+.||++.-=| +|++|+.++=.||..
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~l~-~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPELP-TLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 66667777777788888999999998543 455555554 46666654333 455677766555544
No 86
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=4.9 Score=52.50 Aligned_cols=313 Identities=15% Similarity=0.171 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHHHhhhcCc--hhHH-HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcC-CC
Q 000696 986 EKWINLIGDVAGCVSIKRP--KEVQ-TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DE 1061 (1349)
Q Consensus 986 e~~~~gV~lLAr~m~~~~~--~~~~-~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~-D~ 1061 (1349)
++-..-|+.|++-+.+..+ .++. =++.++.|.++|++.--|.-|+.+++.+-.--......+..++..-.+.+. |+
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~ 515 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDN 515 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Confidence 4445566777777766655 2332 466788999999999999999999998864322222333344444444444 88
Q ss_pred ChhHHHHHhhhccCCcc------hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhc
Q 000696 1062 SPTVRGLCLRGLVQIPS------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135 (1349)
Q Consensus 1062 ~~~VR~lslrGLgnl~~------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lr 1135 (1349)
+.-||.=|.-||-..-. .+++.+.+.++..++....+.+.++.-..|.. ++..-+ +.+.|+-..+|..|.
T Consensus 516 ~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~---iV~~fs-eElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 516 ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEK---IVCKFS-EELSPFAVELCQNLA 591 (1010)
T ss_pred cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHH---HHHHHH-HhhchhHHHHHHHHH
Confidence 99999988888775532 26888999999999998888765554444433 333322 346788888888885
Q ss_pred CcC-------CCCChHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHhhhhHHHHhccCCChh-HHHH-HHHH-----
Q 000696 1136 NLQ-------VSMNVKMRRNAFAAFGALSNF----GVGSQREAFLEQIHAMLPRLILHIYDDDLS-VRQA-CRNT----- 1197 (1349)
Q Consensus 1136 pff-------ede~~~vR~aAi~LfG~L~~~----~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~-V~~a-ck~t----- 1197 (1349)
.-| +++.+..-..|+.+-|=|... ..-.....+..|+...+.|.+-|..+.+.. |-+. +..+
T Consensus 592 ~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 592 ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 443 334555555666666655441 111233447788999999999888777653 3332 2222
Q ss_pred -HHhhhhhhhh----hhhhhhccccCCCCCCCCh-HHHHHHHHHHH------HHhCcchHHHHHHHHHHhhcCC---Chh
Q 000696 1198 -LKQVAPFMEI----GVYGIFNSHCFNSDHRSDY-ETFVRDLTRQF------VQHFPSRIDSYMGSTIQAFEAP---WPI 1262 (1349)
Q Consensus 1198 -L~~~a~lL~~----~l~~lf~~~~~~~~~~l~~-~~f~~~l~k~L------~~~~~~~~~~~l~~~l~ylkS~---~~~ 1262 (1349)
...++|- =| .+-++|++. +.+| .+++-.+-++. ..++|+.......-+-.-+-|. ..+
T Consensus 672 ~~~~Isp~-mW~ll~li~e~~~~~------~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d 744 (1010)
T KOG1991|consen 672 LSKEISPI-MWGLLELILEVFQDD------GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD 744 (1010)
T ss_pred hhcccCHH-HHHHHHHHHHHHhhh------hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHH
Confidence 1123332 24 224455442 2333 33322222222 3456666666655555555552 233
Q ss_pred HHHHHHHHHHhhhccCchhhhhhccHHHHH-HHHHHHhcc-CCChhHHHHHHH
Q 000696 1263 IQANAIYFSSSILCLCDDQHILSLFYTQVF-GLLVVKLSQ-SADAIVRATCSS 1313 (1349)
Q Consensus 1263 IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~-~~L~~~Ll~-Dpdp~VR~~Aa~ 1313 (1349)
++ .|+.+++.++.+... ...+ ..+-.. -++.. +++ +.....|..+-+
T Consensus 745 ~~-~a~kLle~iiL~~kg-~~dq-~iplf~~~a~~~-l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 745 CE-SACKLLEVIILNCKG-LLDQ-YIPLFLELALSR-LTREVETSELRVMLLE 793 (1010)
T ss_pred HH-HHHHHHHHHHHHhcC-cHhh-HhHHHHHHHHHH-HhccccchHHHHHHHH
Confidence 44 488899988776664 2211 112222 23444 444 688888876643
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.04 E-value=27 Score=45.62 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhH
Q 000696 761 GAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIV 821 (1349)
Q Consensus 761 ~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV 821 (1349)
-++-++.+++.+-|.++.+. +..|++.+..+|.......+.+.++-+..-|....++.++
T Consensus 728 ~VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l 787 (1005)
T KOG2274|consen 728 FVGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL 787 (1005)
T ss_pred HHhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH
Confidence 45668999999999999766 9999999999999999999999999999999888888766
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=3.4 Score=52.28 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHhhhcC--chhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHH---HHHHhhcCC
Q 000696 986 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMV---EALCRHVSD 1060 (1349)
Q Consensus 986 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i---~~L~~~l~D 1060 (1349)
+.-++|.-.+-.-|..+. |..+-.|..+.+|. ...+-.|+ .-+|-|++..-.....+++.++ +...+-+++
T Consensus 35 ~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps--~~~elKKL--ly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH 110 (948)
T KOG1058|consen 35 EVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPS--RNHELKKL--LYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH 110 (948)
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHhheeecc--CchHHHHH--HHHHHHHccccCCCcccHHHHHHHHHHHhhhccC
Confidence 444555555555554432 22233333444443 22233333 3477788876544444544433 778889999
Q ss_pred CChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000696 1061 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1349)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1115 (1349)
||.-||.--+|=|..+-.. .+...+.|++.++|+....-|+--|+.++..|.
T Consensus 111 PNEyiRG~TLRFLckLkE~---ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 111 PNEYIRGSTLRFLCKLKEP---ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred chHhhcchhhhhhhhcCcH---HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 9999999999977766542 123444555555554444444444444444433
No 89
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.78 E-value=2 Score=51.79 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=122.5
Q ss_pred ccchHHHHHHHHHhhhc--CCChhcHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhc
Q 000696 1023 RFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALL 1096 (1349)
Q Consensus 1023 ~~~Ri~a~af~sELl~~--~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L 1096 (1349)
..+|--|..=+-+++.. ..+++.....++..+.+-+.| .++..|++|||-|+.|..+ +...+....+...+..=
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 34455555444444432 234555566677888888899 8999999999999998755 44555666677777777
Q ss_pred cCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhh
Q 000696 1097 DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML 1176 (1349)
Q Consensus 1097 ~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~L 1176 (1349)
.|.++.|.-.|-....+++....+. .-+.+|+..|.. +++..=.+++...-.+.. +-..+.+..+|-...
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e---~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFE---RLSAEELLNLLPDIA 450 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHh---hcCHHHHHHhhhhhh
Confidence 7778889999999888888765432 233455554444 444444555645444443 334566666666666
Q ss_pred hHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhcc
Q 000696 1177 PRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1215 (1349)
Q Consensus 1177 vpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~ 1215 (1349)
+.++---.-....|||+|-|.|-....-+|. .+.--+..
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 6666666666889999999999998888886 55444443
No 90
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.75 E-value=0.58 Score=53.80 Aligned_cols=296 Identities=17% Similarity=0.138 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHHHHhhhc-CchhHHH-----HHHHHhhhh-cccCccchHHHHHHHHHhhhcCC-ChhcHHHH-HHHHHH
Q 000696 985 KEKWINLIGDVAGCVSIK-RPKEVQT-----ICLILTKSI-NRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALC 1055 (1349)
Q Consensus 985 ~e~~~~gV~lLAr~m~~~-~~~~~~~-----i~~~L~~~L-~s~~~~~Ri~a~af~sELl~~~~-~~~~l~~~-~i~~L~ 1055 (1349)
.+.-++||...-+.+++- +|| +.+ ++..++.+| +...+--..-|++.++..-.-.. ....+++. .+-.+.
T Consensus 85 ie~q~qav~kFR~~LS~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 85 IEQQLQAVYKFRKLLSKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHhccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 344455555555555443 333 222 223344444 33444445677888877644211 12222222 455677
Q ss_pred hhcCCCChhHHHHHhhhccCCcch--hhhhhH--HHHHHHHHhhccC-------------------------CChhHHHH
Q 000696 1056 RHVSDESPTVRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDD-------------------------LDESVQLT 1106 (1349)
Q Consensus 1056 ~~l~D~~~~VR~lslrGLgnl~~~--~v~~~~--~~lL~all~~L~d-------------------------~d~~V~le 1106 (1349)
+-+.+++..||.-++=+|||++-. ..+-|. ..+|+.++..|.. +|...+-.
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 778999999999999999999732 111111 1111112211111 11225555
Q ss_pred HHHHHHHHhccCCcCCcchhH-------------------HhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHH
Q 000696 1107 AVSCLLTILKSSSKDAVEPIL-------------------LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1167 (1349)
Q Consensus 1107 Am~~L~~lL~~l~~~~~~~~l-------------------~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~ 1167 (1349)
|+..|.|++...+.+.+..-. ..+.-||.-++.+|+..|..-|++.-|.+.. |.+
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT---G~D--- 317 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT---GSD--- 317 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee---cCc---
Confidence 556666665555444322111 2234566677888999999999999998876 322
Q ss_pred HHHH------HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000696 1168 FLEQ------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1241 (1349)
Q Consensus 1168 ~~eQ------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~ 1241 (1349)
...| ++..+.|||-| +-..+++.+-.|+..+..==--.++++...+. .
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~nl----------------i------- 371 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDANL----------------I------- 371 (526)
T ss_pred cceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhccc----------------c-------
Confidence 1223 34556666544 44478876655554433200002222222110 0
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc--hhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1242 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1242 ~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~--~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
|- .+..+.+..-.+|..|+|-|.......- ++.+..+=....++.|-. |+.=.|-.|-..|-.++..+.
T Consensus 372 Pp--------Li~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~-~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 372 PP--------LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCD-LLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHH-HHhccCccchhhhHHHHHHHH
Confidence 11 1112222334489999999885543221 344444333346667777 666566666667777777777
Q ss_pred Hhc
Q 000696 1320 KSI 1322 (1349)
Q Consensus 1320 k~~ 1322 (1349)
|..
T Consensus 443 k~G 445 (526)
T COG5064 443 KVG 445 (526)
T ss_pred hhh
Confidence 654
No 91
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.29 E-value=0.73 Score=60.23 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=133.8
Q ss_pred HhhhhcccCccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHH
Q 000696 1014 LTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQV 1088 (1349)
Q Consensus 1014 L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~l 1088 (1349)
+..-+.|+.=..|.-|+.-+...+..+.. ......-+.-.+.-.++|.|-.|-..++.-|.-|+.. ....|...+
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 33444455555566666555555554431 1111111233455578999999999999988777643 578899999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1168 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1168 (1349)
.+++++.+.|.-..++-.+..++-.+++.-. +. .+..-|--+..+-++.+|.--..+|+...+.-+. +-.+
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~~ 408 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTP---LS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTVE 408 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhccc---HH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCcc
Confidence 9999999999777766666666666666322 22 2333334577889999999999999998874332 4567
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhc
Q 000696 1169 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN 1214 (1349)
Q Consensus 1169 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~ 1214 (1349)
++-++...+-++-|.+|-+++||+|+..++..+-..+|- .+..++.
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 778888999999999999999999999999888877777 4444443
No 92
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.94 E-value=31 Score=42.90 Aligned_cols=287 Identities=15% Similarity=0.142 Sum_probs=161.0
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1079 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---- 1079 (1349)
.+++++.++-..+++++-.+|-+|+-.|.-.+.-|.. ......+.+-.+..-.+|++--|..-..-.+|.|+.+
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999988887644 2344556666777777899999988888889988765
Q ss_pred -hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc------CCcchhHHhHHhhh---cCcCCCCChHHHHHH
Q 000696 1080 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK------DAVEPILLNLSVRL---RNLQVSMNVKMRRNA 1149 (1349)
Q Consensus 1080 -~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~------~~~~~~l~~i~~~l---rpffede~~~vR~aA 1149 (1349)
.-..|.+....+++-||.|- ..+...--...-++..++.+ ..+.++...|...| ...- +.....|.++
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-~Ne~n~R~s~ 520 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA-LNESNLRVSL 520 (858)
T ss_pred cCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh-ccchhHHHHH
Confidence 22445677788999998873 22222222222222222222 12334444443333 1222 3446789999
Q ss_pred HHHHHHhhccCCCcchHHH-------HHHHHhhhhHH--HHhccCCCh---------hHHHHHHHHHHhhhhhhhh---h
Q 000696 1150 FAAFGALSNFGVGSQREAF-------LEQIHAMLPRL--ILHIYDDDL---------SVRQACRNTLKQVAPFMEI---G 1208 (1349)
Q Consensus 1150 i~LfG~L~~~~~~~~~~~~-------~eQv~~~LvpL--LlHL~D~~~---------~V~~ack~tL~~~a~lL~~---~ 1208 (1349)
|+.+|.|.-++...-.+.+ .+.+-+++--+ ++-++|.-. .|-.+--++.++ -.+. .
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~---~ie~v~D~ 597 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR---DIEDVEDQ 597 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CcccHHHH
Confidence 9999999987643211110 01111111100 122222110 111111111111 0011 1
Q ss_pred hhhhhccccCCC-CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh----cCCChhHHHHHHHHHHhhhccCchhhh
Q 000696 1209 VYGIFNSHCFNS-DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF----EAPWPIIQANAIYFSSSILCLCDDQHI 1283 (1349)
Q Consensus 1209 l~~lf~~~~~~~-~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~yl----kS~~~~IR~~A~~fiG~l~~~~~~~~~ 1283 (1349)
+-.+|-+. ++. +...-+++.+..|. .|+.+..++...|+..-++|+ +.....+-..|+-|+|-+.+.+..+.+
T Consensus 598 lm~Lf~r~-les~~~t~~~~dV~~aIs-al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 598 LMELFIRI-LESTKPTTAFGDVYTAIS-ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHH-HhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22222221 111 12333455555543 345545555555555555554 445567888899999999998887665
Q ss_pred hhccHHHHHHHHHHHhccC
Q 000696 1284 LSLFYTQVFGLLVVKLSQS 1302 (1349)
Q Consensus 1284 ~~~~~e~l~~~L~~~Ll~D 1302 (1349)
++.+.+.+.|.. .++.
T Consensus 676 --~y~d~~ms~LvQ-~lss 691 (858)
T COG5215 676 --IYADVLMSSLVQ-CLSS 691 (858)
T ss_pred --HHHHHHHHHHHH-HhcC
Confidence 455667777776 5543
No 93
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=12 Score=47.91 Aligned_cols=266 Identities=14% Similarity=0.186 Sum_probs=160.7
Q ss_pred HHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHH
Q 000696 1013 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS 1090 (1349)
Q Consensus 1013 ~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~~~~~~lL~ 1090 (1349)
.|.++|+|..+.-+.=|+-++..++-+-.+-..+.-.++.+. ...|+.|++|.-==|-.-|.. ....+ -++
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNV----askn~EVKkLVyvYLlrYAEeqpdLALL---SIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNV----ASKNIEVKKLVYVYLLRYAEEQPDLALL---SIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh----hccCHHHHHHHHHHHHHHhhcCCCceee---eHH
Confidence 456777888888888888888888876544333444444333 456788888875444433332 11111 156
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHH
Q 000696 1091 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1170 (1349)
Q Consensus 1091 all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1170 (1349)
.+-.+|.|++..++.-|+++|+.|= +..+..-+-..++.+-.|..+-||..|..+.-+|=... -..++
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~---- 179 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKD---- 179 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHH----
Confidence 6778899999999999999999863 22333334456688889999999999998877775422 12233
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhh----hhh---hhhhhh-ccccCCCCCCCChHHHHHHHHHHHHHhCc
Q 000696 1171 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----MEI---GVYGIF-NSHCFNSDHRSDYETFVRDLTRQFVQHFP 1242 (1349)
Q Consensus 1171 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l----L~~---~l~~lf-~~~~~~~~~~l~~~~f~~~l~k~L~~~~~ 1242 (1349)
|+...+-- -|.|..|-|+.++-.||..|+|- ++- ++-.++ +-..|+. -..++.+.+|--+.+|
T Consensus 180 qL~e~I~~---LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQ------vvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 180 QLEEVIKK---LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQ------VVLINMLTRYARHQLP 250 (968)
T ss_pred HHHHHHHH---HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhH------HHHHHHHHHHHHhcCC
Confidence 33333222 24699999999999999999972 221 111111 1112322 2355666666555554
Q ss_pred ch--------------------------------HHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHH
Q 000696 1243 SR--------------------------------IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1290 (1349)
Q Consensus 1243 ~~--------------------------------~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~ 1290 (1349)
+- +..++.++-..+.|..+.+=-|+| +...+..|..+ ...
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~a---ql~y~lAP~~~-----~~~ 322 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVA---QLFYHLAPKNQ-----VTK 322 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHH---hHHHhhCCHHH-----HHH
Confidence 43 345677777788887775544444 23333334333 255
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHH
Q 000696 1291 VFGLLVVKLSQSADAIVRATCSSSLG 1316 (1349)
Q Consensus 1291 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1316 (1349)
+.++|.. |++ ..+.|+-..-+.+.
T Consensus 323 i~kaLvr-LLr-s~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 323 IAKALVR-LLR-SNREVQYVVLQNIA 346 (968)
T ss_pred HHHHHHH-HHh-cCCcchhhhHHHHH
Confidence 6778888 555 33455554444433
No 94
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.74 E-value=3.4 Score=54.29 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=132.2
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 000696 1094 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1173 (1349)
Q Consensus 1094 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1173 (1349)
..+.+++=.-+.||+.+|..++..-.........--++.-++.-+-|-|-.|-..|...++.+++ ..+..|+..+.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~----~lr~~~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK----KLRPLFRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH----hcchhhHHHHH
Confidence 34444455577777777777776655122222222333344556788899999999999999997 34556889999
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000696 1174 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1253 (1349)
Q Consensus 1174 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l 1253 (1349)
..+++++=.+.|..+.++.+.+.++...+.. ..+..+....+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--------------------------------------~~l~~~~~~I~ 377 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS--------------------------------------TPLSKMSEAIL 377 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc--------------------------------------ccHHHHHHHHH
Confidence 9999999999999999999887777765541 11112233335
Q ss_pred HhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1254 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1254 ~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
.+++...+.+|.--..|.+-....+++.-...-....+...+.. .-.|-++.||..|.++++-+.+.
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHH
Confidence 57788888888887777776666666444444566889999998 89999999999999999988754
No 95
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=1.2 Score=56.90 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhh-cCch--hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhH
Q 000696 989 INLIGDVAGCVSI-KRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTV 1065 (1349)
Q Consensus 989 ~~gV~lLAr~m~~-~~~~--~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~V 1065 (1349)
-.|++.+++-+-+ ++++ .-.+++...+.+|++.+.-...-|+--++-|-.- -.+..++.+.+.-.+.-+.+-+..
T Consensus 745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--y~e~il~dL~e~Y~s~k~k~~~d~ 822 (982)
T KOG4653|consen 745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--YPEDILPDLSEEYLSEKKKLQTDY 822 (982)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--cchhhHHHHHHHHHhcccCCCccc
Confidence 3456666665432 2333 2447788888888888887788877777666332 112222223332222222221223
Q ss_pred HHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CCCC
Q 000696 1066 RGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSM 1141 (1349)
Q Consensus 1066 R~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fede 1141 (1349)
|...=.+++++... -+.+|...++..+|+|.+|+|..-++.++..|+.+...+..+ ++.++..++..|-.. -.|.
T Consensus 823 ~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~~ev~~~Il~l~~~d~ 901 (982)
T KOG4653|consen 823 RLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFFHEVLQLILSLETTDG 901 (982)
T ss_pred eehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHccCC
Confidence 32222555555432 345788899999999999998889999999999999887644 444666665555211 2288
Q ss_pred ChHHHHHHHHHHHHhhccC
Q 000696 1142 NVKMRRNAFAAFGALSNFG 1160 (1349)
Q Consensus 1142 ~~~vR~aAi~LfG~L~~~~ 1160 (1349)
+..||.||+.+..++.+..
T Consensus 902 s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 902 SVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred chhhHHHHHHHHHHHHhcc
Confidence 8999999999999999843
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.53 E-value=0.56 Score=60.76 Aligned_cols=195 Identities=16% Similarity=0.103 Sum_probs=115.7
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhc-CCChhcHHHH-HHHHHHhhcCC---CChhHHHHHhhhccCCcch----
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHVSD---ESPTVRGLCLRGLVQIPSI---- 1079 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~-~~~~~~l~~~-~i~~L~~~l~D---~~~~VR~lslrGLgnl~~~---- 1079 (1349)
+|+-|++++|+|+-..-|.+=+=+-+..|.= +.....|++. .-....+-+.+ =++.=|.||.--|+.+..+
T Consensus 512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lG 591 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLG 591 (1387)
T ss_pred chHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchh
Confidence 5666777777776665555544344444430 0001111111 00011111111 1356677777777765432
Q ss_pred hhhhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1080 HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1080 ~v~~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
+..-+...++.-|+.-|.|. +.-...=...+|+++-+.-+.....-.-.+-..++-....|+-++||+||+.++|.+..
T Consensus 592 Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 592 QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 44445567788888888774 23355556678888866544332222222333455667889999999999999999998
Q ss_pred cCCC---cc-------------hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhh
Q 000696 1159 FGVG---SQ-------------REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1203 (1349)
Q Consensus 1159 ~~~~---~~-------------~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1203 (1349)
.+.. .. +....+++-.++.+++--++|..|-|+++-..+|.+.+.
T Consensus 672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred ccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4311 01 112334566777899999999999999998888887663
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.98 E-value=3.8 Score=53.07 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=146.5
Q ss_pred CCC-ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcC-CC--------hhcHHHH-
Q 000696 981 EQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GG--------FDSLLEQ- 1049 (1349)
Q Consensus 981 ~W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~~--------~~~l~~~- 1049 (1349)
||. ..+.-.++..-+.++++-.+.++-..+...++..|++++-.-. |+-.|+=++..+ .. .+.+.++
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~--aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSP--AAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccch--HHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 565 5566677777788888877777888999999999988553322 222333333321 11 1123333
Q ss_pred ----HHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC---
Q 000696 1050 ----MVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS--- 1118 (1349)
Q Consensus 1050 ----~i~~L~~~l~D~~~~VR~lslrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l--- 1118 (1349)
++-.|.+...-....+|..=+.||+++. ..-+-...+.++|-++.+|+=.|-.|.+.+..++..++...
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 6667878877666677888888887554 33556677999999999999888888788888777776543
Q ss_pred CcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000696 1119 SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1198 (1349)
Q Consensus 1119 ~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1198 (1349)
...+++.+...+..-=++ -++....||..|+..++.|.++...+.-.+|+.+|.++++|-| -|+---||+.|-+|=
T Consensus 944 ~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L---dDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL---DDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc---CcHHHHHHHHHHHHh
Confidence 344555544433221111 1111278999999999999998888888999999999999964 577778998886664
Q ss_pred H
Q 000696 1199 K 1199 (1349)
Q Consensus 1199 ~ 1199 (1349)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 3
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.82 E-value=0.084 Score=39.80 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1349)
+..+.+.++||++.||..|+++||+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888887653
No 99
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.61 E-value=1.4 Score=57.32 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=122.4
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc-hhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcc
Q 000696 1086 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1164 (1349)
Q Consensus 1086 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~-~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1164 (1349)
|.+|..+++-- =++.|+.-|++.|+.=.| .+. +..+-|-.-...++...-.++|-.=..+...+.+....-+
T Consensus 475 PiVLQVLLSQv------HRlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 475 PIVLQVLLSQV------HRLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred chHHHHHHHHH------HHHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence 56666666653 468899999999975333 222 2222222222335667778899998999999998654444
Q ss_pred hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000696 1165 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1244 (1349)
Q Consensus 1165 ~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~ 1244 (1349)
.+-++|-.+...+..+---+--+++-+..|.|.|..+..-..-.-++.++.
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~----------------------------- 598 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG----------------------------- 598 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc-----------------------------
Confidence 555666555444443321122245677777777766554322111111111
Q ss_pred HHHHHHHHHHhhcCC-ChhHHHHHHHHHHhhhccCchhhhhhccHHH-HHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1245 IDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1245 ~~~~l~~~l~ylkS~-~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~-l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
-++.-|+..+.++ .+=+|++.++-+|.+-++++..... +.+. ...-|.. ++.||-|.||+.|.-|||-|..-
T Consensus 599 --~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~-~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 599 --NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLIL-LLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred --cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHH-HhcCccHHHHHHHHHHHHHHhcc
Confidence 1444566777774 5779999999999999988855542 2222 3334666 89999999999999999988743
No 100
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.44 E-value=43 Score=41.23 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=157.4
Q ss_pred HHHHhhhhcccCccchHHHHHHHHHhhhcCCC--hhcHHHHHHHHHHhhcCCC-ChhHHHHHhhhccCCcch-hhhhhH-
Q 000696 1011 CLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-HIHQYA- 1085 (1349)
Q Consensus 1011 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~-~~~VR~lslrGLgnl~~~-~v~~~~- 1085 (1349)
...++++|++++..--..|.-+++-++..... .....+...+.|...++.+ +...+-.+++.|+++... ..+...
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 34445566666666667777778887764322 1222333455566555543 355666777888877543 111100
Q ss_pred -HHHHHHHHhhccCCC--hhHHHHHHHHHHHH------hccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHh
Q 000696 1086 -TQVLSVILALLDDLD--ESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1156 (1349)
Q Consensus 1086 -~~lL~all~~L~d~d--~~V~leAm~~L~~l------L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1156 (1349)
...++.+.+.|.... -...++++.++=-+ ...+...++-+.+++|+. +.-.++|=..++..|-++
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k------~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK------ESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH------hhhhHHHHHHHHHHHHHH
Confidence 112333444333211 23444444333221 222222233334444432 222566666777777777
Q ss_pred hccCCCc-chHHHHHHHH-hhhhHHHHhccCC---ChhHHH---HHHHHHHhhhhhhh-h-hh-hhhhcccc-CCCCCCC
Q 000696 1157 SNFGVGS-QREAFLEQIH-AMLPRLILHIYDD---DLSVRQ---ACRNTLKQVAPFME-I-GV-YGIFNSHC-FNSDHRS 1224 (1349)
Q Consensus 1157 ~~~~~~~-~~~~~~eQv~-~~LvpLLlHL~D~---~~~V~~---ack~tL~~~a~lL~-~-~l-~~lf~~~~-~~~~~~l 1224 (1349)
....... .+..+...+. ..+++++-.|+.. |+++.. .-+..|.....-+- | +. .++...+. |.+ .
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp---~ 333 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP---V 333 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC---C
Confidence 7632211 1223333433 4777777666543 445543 23334444333233 4 33 45555542 433 4
Q ss_pred C-hHHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHHhhhccCc--hhhhhhccHHHHHHHHHHHhc
Q 000696 1225 D-YETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLS 1300 (1349)
Q Consensus 1225 ~-~~~f~~~l~k~L~~~~~~~~~~~l~~~l~yl-kS~~~~IR~~A~~fiG~l~~~~~--~~~~~~~~~e~l~~~L~~~Ll 1300 (1349)
| -+.|+++=...|.++. ...+...+.++ +|..+.+=+-|+.=||.+++++| ......++ .-...+. |.
T Consensus 334 H~se~FW~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg---~K~~vM~-Lm 405 (429)
T cd00256 334 HKSEKFWRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG---GKQRVMR-LL 405 (429)
T ss_pred CCCchHHHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC---cHHHHHH-Hh
Confidence 4 3778888777776554 34455666666 46667777888888999999997 23333333 2334555 78
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 000696 1301 QSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1301 ~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
.+|||.||..|-.|...+.
T Consensus 406 ~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8999999999999987764
No 101
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.35 E-value=17 Score=44.07 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhhccCCChh-HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc--c
Q 000696 1083 QYATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN--F 1159 (1349)
Q Consensus 1083 ~~~~~lL~all~~L~d~d~~-V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~--~ 1159 (1349)
.-..+...+++.|=+|..+. |..+|+++++-.+-+-.-.....+..+-+.-|..-.+|..-.+|..|+-..|.+.. .
T Consensus 386 n~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~ 465 (728)
T KOG4535|consen 386 NDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALI 465 (728)
T ss_pred CcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHH
Confidence 33467888899998875544 77888888877655444444445555555555444556678899999999998876 3
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCC----ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHH-HHH
Q 000696 1160 GVGSQREAFLEQIHAMLPRLILHIYDD----DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVR-DLT 1234 (1349)
Q Consensus 1160 ~~~~~~~~~~eQv~~~LvpLLlHL~D~----~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~-~l~ 1234 (1349)
.+.+..+.+.+.+.+.++.-++.+.-. +..|...+-++|+....++.. +.. ..+++.+. ++.
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-i~~------------~~~~e~~~~~~~ 532 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-IEK------------PTFAEIIEESIQ 532 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-hhh------------ccHHHHHHHHHH
Confidence 455666667777666555544433222 334666666666665555442 100 00111110 100
Q ss_pred HHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000696 1235 RQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1314 (1349)
Q Consensus 1235 k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1314 (1349)
+ +...-+ +- ..-.+|.||++.+|.+.++-.-......--.+++++|-.++.+-..-.||..||.|
T Consensus 533 ~-l~~~v~---------~~-----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~a 597 (728)
T KOG4535|consen 533 A-LISTVL---------TE-----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAA 597 (728)
T ss_pred h-ccccee---------cc-----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhh
Confidence 0 000000 01 12348999999999998865532222233467899998844555788999999999
Q ss_pred HHHHH
Q 000696 1315 LGWLL 1319 (1349)
Q Consensus 1315 L~~l~ 1319 (1349)
|..-.
T Consensus 598 L~vp~ 602 (728)
T KOG4535|consen 598 LSVPG 602 (728)
T ss_pred hcCCC
Confidence 86543
No 102
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.26 E-value=0.85 Score=43.77 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1249 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1249 l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
+..++.++.||.++||+.|...+..++.... ....+.+.+...+.. .++|+||.|=-.|-++|.-|..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHH
Confidence 5677889999999999999999998887665 233456788888888 8999999999999999888773
No 103
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.94 E-value=2.7 Score=54.28 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----------------hhhhhHHHHHHHHHhhccCCChhHHHHH
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----------------HIHQYATQVLSVILALLDDLDESVQLTA 1107 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-----------------~v~~~~~~lL~all~~L~d~d~~V~leA 1107 (1349)
.+++.+...+.......++.+|..|+-++|.+... -.+++.+.+...+-.+....|+...+-+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 44444444443333346788999999999987532 1245777777777777777788899999
Q ss_pred HHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCC---ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc
Q 000696 1108 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1184 (1349)
Q Consensus 1108 m~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede---~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1184 (1349)
+.+|+++... .+...+.|+..++ ...+|.+|+..|..+... .-+.+...+.|++.. .
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n-~ 570 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMN-T 570 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH--T
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcC-C
Confidence 9999998752 2333445666666 799999999999987542 235667778886654 4
Q ss_pred CCChhHHHHHHHHHHhhhhhhhh--hhhhhh
Q 000696 1185 DDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1213 (1349)
Q Consensus 1185 D~~~~V~~ack~tL~~~a~lL~~--~l~~lf 1213 (1349)
.++++||-||-..|.+|-|-..+ .+....
T Consensus 571 ~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp TS-HHHHHHHHHHHHHT---HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55788999999999999765555 444443
No 104
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.77 E-value=2.9 Score=51.47 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=123.8
Q ss_pred hhHHHHHHHHhhhhcccCccchHHHH-HHHHH-hhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--h
Q 000696 1005 KEVQTICLILTKSINRQQRFQREAAA-AALSE-FVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--H 1080 (1349)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sE-Ll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~ 1080 (1349)
.++-++++.+++.=+.+.-+.|+... +-|.+ .+..-.....+....+.++.+++..++..||.-+++=|+-+... .
T Consensus 45 ~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 45 EEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 35666777777776667777777653 22222 22221223567788999999999999999999999988755421 1
Q ss_pred h-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCCCCChHHHHHHHHH-----
Q 000696 1081 I-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAA----- 1152 (1349)
Q Consensus 1081 v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~lrpffede~~~vR~aAi~L----- 1152 (1349)
+ .-....++..+.+-+.|.+..|+.||+.+|++.=+.-+.. .+..+++.+ ...|.+++||.+|.--
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~------vqnDPS~EVRr~allni~vdn 198 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDI------VQNDPSDEVRRLALLNISVDN 198 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------HhcCcHHHHHHHHHHHeeeCC
Confidence 1 2245678899999999989999999999999986543332 233444443 4589999999999643
Q ss_pred --HHHhhcc---CCCcchHHHHHHHHhhh-----------hHHH-HhccCCChhHHHHHHHHHHh
Q 000696 1153 --FGALSNF---GVGSQREAFLEQIHAML-----------PRLI-LHIYDDDLSVRQACRNTLKQ 1200 (1349)
Q Consensus 1153 --fG~L~~~---~~~~~~~~~~eQv~~~L-----------vpLL-lHL~D~~~~V~~ack~tL~~ 1200 (1349)
++-+..- +.+..+..+.+.++..+ +-|+ --|.|-+-+|..||+.++..
T Consensus 199 sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 199 STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 2222221 22334444555544333 1111 34678899999999988754
No 105
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.74 E-value=4.3 Score=52.02 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-h----------hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H----------IHQYATQVLSVILALLDDLDESVQLTAVSCLLT 1113 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~----------v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~ 1113 (1349)
..++.+...+.....-+++.+|.-|+-++|++... . +..+.+.+..-+-.+..+.|+..+.-++.+|++
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 33444444443333445889999999999988642 1 244556666666666666677788888999998
Q ss_pred HhccCCcCCcchhHHhHHhhhcCcCC-C--CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000696 1114 ILKSSSKDAVEPILLNLSVRLRNLQV-S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1190 (1349)
Q Consensus 1114 lL~~l~~~~~~~~l~~i~~~lrpffe-d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1190 (1349)
+..... ...+.|+.. + -...+|.+|+..|..++.... +.+...+.|+. +=.+++++|
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~-~n~~e~~Ev 532 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIY-LNRAEPPEV 532 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHH-cCCCCChHH
Confidence 775321 122233443 3 346899999999998875222 23445666654 446778999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 000696 1191 RQACRNTLKQVAPFMEI 1207 (1349)
Q Consensus 1191 ~~ack~tL~~~a~lL~~ 1207 (1349)
|.+|-..|.+|-|-..+
T Consensus 533 RiaA~~~lm~t~P~~~~ 549 (574)
T smart00638 533 RMAAVLVLMETKPSVAL 549 (574)
T ss_pred HHHHHHHHHhcCCCHHH
Confidence 99999999999665444
No 106
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=6.1 Score=49.76 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=100.1
Q ss_pred HhhhhcccCccchHHHHHHHHHhhhc--CCCh----hcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhh--h
Q 000696 1014 LTKSINRQQRFQREAAAAALSEFVRY--SGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIH--Q 1083 (1349)
Q Consensus 1014 L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~----~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~--~ 1083 (1349)
++..|+-++...|.-|+-.|.++-.- |... ...++.=...|..-+.||.|.||.-|+.|+..+-.. .+- .
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45678888889999999999998653 3221 123333445677778999999999999999866432 110 0
Q ss_pred hHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1084 YATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1084 ~~~~lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
-...++..+.+-+- |+..+|++..+.||..++.. ....+++-.+..+++|.+-|.+..||.|+..+.-.+-.
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11222333333222 23467999999999999975 33457778888899999999999999999998877654
No 107
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=4.8 Score=51.45 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChh
Q 000696 985 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1064 (1349)
Q Consensus 985 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~ 1064 (1349)
++...+|+..+-+.|..+ ..+..++.-+++.++..+-.++-..--.+. +.-..+...-.-.++.+..-..||||.
T Consensus 27 ~~kr~~a~kkvIa~Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~---nYa~~~P~~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLM---NYAKGKPDLAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred hhhHHHHHHHHHhcCccC--cchHhhhHHHHhhcccCCchHHHHHHHHHH---HhhccCchHHHhhhhhhhccCCCCCHH
Confidence 366677777777777554 567777777777777655444333322222 221122222233678888888999999
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChH
Q 000696 1065 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1144 (1349)
Q Consensus 1065 VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1144 (1349)
+|.+|+|-+|.+...++ ..++...|..++.|.+.-|+-.|..+..++-+.=.......- ++..+..+..|+++.
T Consensus 102 iR~lAlrtm~~l~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g---l~~~L~~ll~D~~p~ 175 (734)
T KOG1061|consen 102 IRALALRTMGCLRVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG---LVDALKDLLSDSNPM 175 (734)
T ss_pred HHHHHhhceeeEeehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc---hhHHHHHHhcCCCch
Confidence 99999998888876544 345677778888887777777777777776553222211121 222334444588888
Q ss_pred HHHHHHHHHHHhhc
Q 000696 1145 MRRNAFAAFGALSN 1158 (1349)
Q Consensus 1145 vR~aAi~LfG~L~~ 1158 (1349)
|=+.|......+..
T Consensus 176 VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 176 VVANALAALSEIHE 189 (734)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777765
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.06 E-value=6.9 Score=44.79 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=89.2
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhc-CCC-ChhHHHHHhhhccCCcch-hhhhhH
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDE-SPTVRGLCLRGLVQIPSI-HIHQYA 1085 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l-~D~-~~~VR~lslrGLgnl~~~-~v~~~~ 1085 (1349)
+.+..+...|++++...|.-|...+.-+-. ....+..++.-+...++.. .++ |..++..++|-|.||... +.+...
T Consensus 54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l 132 (254)
T PF04826_consen 54 GGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML 132 (254)
T ss_pred CCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH
Confidence 345556778888888888777666654422 2223334444455555543 333 789999999999999743 222222
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC-------cCCcchhHHhHHhhhcCcCCC-CChHHHHHHHHHHHHhh
Q 000696 1086 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-------KDAVEPILLNLSVRLRNLQVS-MNVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1086 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~-------~~~~~~~l~~i~~~lrpffed-e~~~vR~aAi~LfG~L~ 1157 (1349)
...++.++..|...+..+...++..|.++-..-. .+..+++ -.+|+. ++.++-.-++.+|+.+.
T Consensus 133 ~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~--------~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 133 ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSF--------LSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHH--------HHHHccCCccHHHHHHHHHHHHHH
Confidence 3345666666666688888888888887754322 2222222 245665 58999999999999997
Q ss_pred c
Q 000696 1158 N 1158 (1349)
Q Consensus 1158 ~ 1158 (1349)
+
T Consensus 205 ~ 205 (254)
T PF04826_consen 205 E 205 (254)
T ss_pred H
Confidence 6
No 109
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=11 Score=48.71 Aligned_cols=223 Identities=15% Similarity=0.173 Sum_probs=140.5
Q ss_pred HhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHH
Q 000696 1055 CRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131 (1349)
Q Consensus 1055 ~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~ 1131 (1349)
...+.||-+-+|..+++-|..+... +-.....-++...++-|.|.|+-|-+-|++|+..+-+.-++. ++..++
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il~dL~ 808 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----ILPDLS 808 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hHHHHH
Confidence 3456888888999998888877652 333445668899999999988889999999877776664332 222222
Q ss_pred hhhcCcCCCCC----hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh
Q 000696 1132 VRLRNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1207 (1349)
Q Consensus 1132 ~~lrpffede~----~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1207 (1349)
. ++++++ .+.|..-=++++.++. ..|.....+++++.++...-+ .||+-.-|..+-..|+.|+..+.-
T Consensus 809 e----~Y~s~k~k~~~d~~lkVGEai~k~~q-a~Gel~~~y~~~Li~tfl~gv---repd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 809 E----EYLSEKKKLQTDYRLKVGEAILKVAQ-ALGELVFKYKAVLINTFLSGV---REPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred H----HHHhcccCCCccceehHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhc---CCchHHHHHhHHHHHHHHHHHHhh
Confidence 2 333332 2334444477777776 234455566666666555433 377666677777777777765432
Q ss_pred hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhcc
Q 000696 1208 GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1287 (1349)
Q Consensus 1208 ~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~ 1287 (1349)
.+. +|+.+....+..--. -+..+.+|++|+..+-.+.+.+..+... +.
T Consensus 881 ~vs-----------------d~~~ev~~~Il~l~~--------------~d~s~~vRRaAv~li~~lL~~tg~dlLp-il 928 (982)
T KOG4653|consen 881 QVS-----------------DFFHEVLQLILSLET--------------TDGSVLVRRAAVHLLAELLNGTGEDLLP-IL 928 (982)
T ss_pred hhh-----------------HHHHHHHHHHHHHHc--------------cCCchhhHHHHHHHHHHHHhccchhhHH-HH
Confidence 111 244444443333111 1556789999999999888876633321 11
Q ss_pred ---HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1288 ---YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1288 ---~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
.-+....+..+...++|-.+|-.|-.++..++..
T Consensus 929 r~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 929 RLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 1134444555577899999999999998888744
No 110
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.94 E-value=1.7 Score=48.97 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000696 1139 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1201 (1349)
Q Consensus 1139 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1201 (1349)
+.|.+-||.-|...+|.++. . .++--|--+++|+++-|++.|-.+|-.+
T Consensus 230 ~~E~pMVRhEaAeALGaIa~---e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD---E-----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC---H-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56778899999999999874 1 2455566788999999999999988764
No 111
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.93 E-value=12 Score=50.06 Aligned_cols=139 Identities=16% Similarity=0.124 Sum_probs=88.3
Q ss_pred cCcCCCCChHHHHHHHHHHHHhhcc-CCCcchHHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhh
Q 000696 1135 RNLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1212 (1349)
Q Consensus 1135 rpffede~~~vR~aAi~LfG~L~~~-~~~~~~~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~l 1212 (1349)
-++++.|+-.+|.+-..+.|++... -.+..-+..-+++-. .+--|.-|+.|.++-||...=..+.++
T Consensus 318 v~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l----------- 386 (1251)
T KOG0414|consen 318 VDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRL----------- 386 (1251)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----------
Confidence 3689999999999999999999862 222232444444444 677788999999999998763333332
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc--hhhhhhccHHH
Q 000696 1213 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQ 1290 (1349)
Q Consensus 1213 f~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~--~~~~~~~~~e~ 1290 (1349)
|+.+. ...++.+.++.-++.-+.|-..-+|++|+..+-.++..-| .+++...-...
T Consensus 387 ~~~~s----------------------~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~ 444 (1251)
T KOG0414|consen 387 FQQHS----------------------IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAK 444 (1251)
T ss_pred HHccC----------------------CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 22221 1234455666777788888889999999988776666555 33332221222
Q ss_pred HHHHHHHHhccCCChhH
Q 000696 1291 VFGLLVVKLSQSADAIV 1307 (1349)
Q Consensus 1291 l~~~L~~~Ll~Dpdp~V 1307 (1349)
....++. |.++-+|.+
T Consensus 445 ~E~~~~~-~e~~~e~t~ 460 (1251)
T KOG0414|consen 445 LEKELQK-LEEELESTE 460 (1251)
T ss_pred HHHHHHh-hhhhccccc
Confidence 3334555 454444443
No 112
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=15 Score=47.10 Aligned_cols=292 Identities=16% Similarity=0.191 Sum_probs=169.1
Q ss_pred chhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----
Q 000696 1004 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1079 (1349)
Q Consensus 1004 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~---- 1079 (1349)
+.....++.-+...+++.+...|.+|+.....+-.-... ..-...+++.|..-+.|+||.|-.-|+.+|..|...
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 344566677778888888888899888777766443211 111122456777777899999999999999988643
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhcc
Q 000696 1080 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1080 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1159 (1349)
..-...++++.-++..+.+- .-+.-+..|..+......+.. =..+|+.++.|++.+-++.|=.+|..+|-.+.+.
T Consensus 195 ~~~~l~~~~~~~lL~al~ec---~EW~qi~IL~~l~~y~p~d~~--ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNEC---TEWGQIFILDCLAEYVPKDSR--EAEDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred CcccccHHHHHHHHHHHHHh---hhhhHHHHHHHHHhcCCCCch--hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 22334456677777776443 334444455555555554442 2457889999999998888888888777666652
Q ss_pred CCCcchHHHHHH--------------------------------------------------------------------
Q 000696 1160 GVGSQREAFLEQ-------------------------------------------------------------------- 1171 (1349)
Q Consensus 1160 ~~~~~~~~~~eQ-------------------------------------------------------------------- 1171 (1349)
... +.+.
T Consensus 270 ~~~-----~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 270 LKQ-----VNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHH-----HHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 111 1111
Q ss_pred ---HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hh----hhhhccccCCCCCCCCh--HHHHHHHHHHHHHh
Q 000696 1172 ---IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GV----YGIFNSHCFNSDHRSDY--ETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1172 ---v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l----~~lf~~~~~~~~~~l~~--~~f~~~l~k~L~~~ 1240 (1349)
+-+.+--|.-.--|.+++-++++-+|+++||.-..- .. -++++. +.+| .+.+ -..+-+..+
T Consensus 345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~-------~~~yvvqE~~-vvi~dilRk 416 (734)
T KOG1061|consen 345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLET-------KVDYVVQEAI-VVIRDILRK 416 (734)
T ss_pred HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhh-------cccceeeehh-HHHHhhhhc
Confidence 111112222222344445556777777777753322 11 122221 1122 1111 223445667
Q ss_pred CcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHH-HHHHHHHH
Q 000696 1241 FPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT-CSSSLGWL 1318 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~ylkS~~-~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~-Aa~aL~~l 1318 (1349)
+|+.....+.+.-.-+.|=+ |..|++=+|++|.....++ +...+++.+++ =-+|+.+.|+-. =+.++..|
T Consensus 417 yP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~-------~a~elL~~f~e-n~~dE~~~Vql~LLta~ik~F 488 (734)
T KOG1061|consen 417 YPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIE-------NALELLESFLE-NFKDETAEVQLELLTAAIKLF 488 (734)
T ss_pred CCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC-------cHHHHHHHHHh-hcccchHHHHHHHHHHHHHHH
Confidence 88887655555444444433 5689999999998887775 23344555554 355666777752 23334444
Q ss_pred HHhc
Q 000696 1319 LKSI 1322 (1349)
Q Consensus 1319 ~k~~ 1322 (1349)
.|++
T Consensus 489 l~~p 492 (734)
T KOG1061|consen 489 LKKP 492 (734)
T ss_pred hcCC
Confidence 4443
No 113
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.44 E-value=1.7 Score=47.40 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-Hh
Q 000696 1243 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KS 1321 (1349)
Q Consensus 1243 ~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~ 1321 (1349)
..++.|+...+...-|+...+|..|..+++.+++..= ...-+.+..|+. |.-||+|.||..|.+.+..+. |+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999987542 233556888999 899999999999999998875 55
Q ss_pred cccc
Q 000696 1322 INSH 1325 (1349)
Q Consensus 1322 ~~~~ 1325 (1349)
...+
T Consensus 77 ~s~v 80 (187)
T PF12830_consen 77 ESLV 80 (187)
T ss_pred HHHH
Confidence 5443
No 114
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=9.5 Score=52.46 Aligned_cols=219 Identities=15% Similarity=0.185 Sum_probs=151.5
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1168 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1168 (1349)
+.-++.-|..+|+.--..|+..|+.+.+..+......++...+.-...+--|++..||.+++..|..+.. +.++.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t----~lkk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLT----KLKKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH----HHHHHh
Confidence 4455666666788888999999999998887776666666666666677789999999999999999997 344555
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHH
Q 000696 1169 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY 1248 (1349)
Q Consensus 1169 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~ 1248 (1349)
-..+..-++|.++--.|....|+++++.++..+.+==+| .++...- + ++...-....+..+.|+.+.+.
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~--~~v~~~c--~-------~~i~~~~~~~~~~~~~~slSd~ 187 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD--RHVWFKC--D-------PEIFYLVTEILVKETPDSLSDL 187 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh--HHHHHHh--h-------HHHHHHHHHHHhccCccccchh
Confidence 556677888889999999999999999999999983333 2222210 0 1121222345678888888887
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhh-ccCchhhhhhcc----HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 000696 1249 MGSTIQAFEAPWPIIQANAIYFSSSIL-CLCDDQHILSLF----YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1249 l~~~l~ylkS~~~~IR~~A~~fiG~l~-~~~~~~~~~~~~----~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1323 (1349)
-.-+-.+..+--.++-..+-...-.++ ++.+.+++.... .=.--+.+-. +.+++.|.||..+-+.+..+.+.-.
T Consensus 188 ~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk-~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 188 RTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK-LLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH-HhcCCCcchhHHHHHHHHHHHhhhH
Confidence 777777777777776666655544444 455544443111 0011223445 7889999999999998877765443
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.33 E-value=1.7 Score=41.80 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=48.8
Q ss_pred HHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHH
Q 000696 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089 (1349)
Q Consensus 1010 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL 1089 (1349)
.+...+..++++..+-|.-|..-+..|+.+........+.++..+...++|+++-|=--|++||+.++.. +-..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~----~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR----HPDEVL 79 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH----ChHHHH
Confidence 3445555666666666777766667766654411222355666666666666666666666666666642 223345
Q ss_pred HHHHhhccC
Q 000696 1090 SVILALLDD 1098 (1349)
Q Consensus 1090 ~all~~L~d 1098 (1349)
+.+++...|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 555554443
No 116
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.27 E-value=5.4 Score=53.02 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=122.7
Q ss_pred ChhhHHHHHHHHHHHhhhcC-chhHHHHHHHHhhhhcccCcc----chHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhc
Q 000696 984 DKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRF----QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV 1058 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~-~~~~~~i~~~L~~~L~s~~~~----~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l 1058 (1349)
+.++..+.|.-++.-..-+. -..+.+.+.++....+.+... -+.+|+..+..|+.=+ ...-+.-+..|..-+
T Consensus 893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces~l~llftim 969 (1251)
T KOG0414|consen 893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCESHLPLLFTIM 969 (1251)
T ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Confidence 45666666665554443333 233445555555555444333 3678888888887522 111122222333333
Q ss_pred -CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000696 1059 -SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1349)
Q Consensus 1059 -~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1137 (1349)
+.|+|.||.=+.=|+|.++..- ......-=+.++.-|.|.+..|+..|+..|+.++-. +.-.+.-.+-.+|. +
T Consensus 970 eksp~p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKVKGql~eMA~----c 1043 (1251)
T KOG0414|consen 970 EKSPSPRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKVKGQLSEMAL----C 1043 (1251)
T ss_pred hcCCCceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHhcccHHHHHH----H
Confidence 5899999999999999998541 011222235678889999999999999999998643 22233444445554 7
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000696 1138 QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1188 (1349)
Q Consensus 1138 fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1188 (1349)
.+|++.++|..|=.-|-.|++.+ +-+++.|+-.+-||.|.+-
T Consensus 1044 l~D~~~~IsdlAk~FF~Els~k~---------n~iynlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1044 LEDPNAEISDLAKSFFKELSSKG---------NTIYNLLPDILSRLSNGNL 1085 (1251)
T ss_pred hcCCcHHHHHHHHHHHHHhhhcc---------cchhhhchHHHHhhccCcc
Confidence 89999999999999999999732 3477889999999999843
No 117
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=2.8 Score=48.85 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=79.7
Q ss_pred CChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh---------ccCCcCCcchhH
Q 000696 1061 ESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL---------KSSSKDAVEPIL 1127 (1349)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL---------~~l~~~~~~~~l 1127 (1349)
.+-.||+-+.-.|.||... ++--+ ..-++.+++.+...|.+|..-+-.++++|. ...++
T Consensus 179 kdirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep------- 250 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP------- 250 (550)
T ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc-------
Confidence 3557888888888888643 11111 122567778887778788877777777663 22222
Q ss_pred HhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH-hhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000696 1128 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQV 1201 (1349)
Q Consensus 1128 ~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1201 (1349)
.+...+-.+++|.++.+.+-|--.+|.++. +.+.-++-+- ++++.++--|||+--...-+.-+..+.+
T Consensus 251 -~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-----dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 251 -KLVPALVDLMDDGSDKVKCQAGLALRNLAS-----DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred -chHHHHHHHHhCCChHHHHHHHHHHhhhcc-----cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 233344568999999999999999999986 2333334444 4555566667887555444444444333
No 118
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.85 E-value=77 Score=40.28 Aligned_cols=127 Identities=19% Similarity=0.273 Sum_probs=74.3
Q ss_pred cCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC
Q 000696 1021 QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD 1100 (1349)
Q Consensus 1021 ~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d 1100 (1349)
+....+..|+-|+..|.++. ..+-+..++.+..-..|++..||+-|+|||..+..+. ..+.+.+.+.+...|...|
T Consensus 34 g~~k~K~Laaq~I~kffk~F---P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF---PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 34556677777888888775 3455788999999999999999999999999998641 2355666677666666433
Q ss_pred hh---HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHH-HHhhcc
Q 000696 1101 ES---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAF-GALSNF 1159 (1349)
Q Consensus 1101 ~~---V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~Lf-G~L~~~ 1159 (1349)
.. ++-.|+ ..++..=....++.++-+| .+- ..+.+.+|.-++.-. ..|...
T Consensus 110 ~~E~~~v~~sL---~~ll~~d~k~tL~~lf~~i----~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 110 PVELDAVKNSL---MSLLKQDPKGTLTGLFSQI----ESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHHHHHHH---HHHHHH-HHHHHHHHHHHH----H----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHH---HHHHhcCcHHHHHHHHHHH----Hhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 22 444444 4444332223344444444 311 345678999998544 555443
No 119
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=1.2e+02 Score=40.95 Aligned_cols=479 Identities=16% Similarity=0.134 Sum_probs=224.8
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000696 741 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1349)
Q Consensus 741 ~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~v 820 (1349)
.-++..++++|.|.+......||.-+.-+...-..+| +.+.++.+.....-...+.+..+..-|+--||..-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG---- 411 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG---- 411 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC----
Confidence 3467889999999999999999988887776666666 33334444443333333444443333333333321
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchH
Q 000696 821 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDI 900 (1349)
Q Consensus 821 V~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 900 (1349)
-+.+.-++.++..+...-.|++. .|. +++..++-+
T Consensus 412 --------------------------------------lLlps~l~dVvplI~kaL~Yd~~--~G~---~s~G~~VRD-- 446 (1133)
T KOG1943|consen 412 --------------------------------------LLLPSLLEDVVPLILKALHYDVR--RGQ---HSVGQHVRD-- 446 (1133)
T ss_pred --------------------------------------CcchHHHHHHHHHHHHHhhhhhh--hcc---cccccchHH--
Confidence 12222333444444444455542 111 112222322
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCC--CC---------C---CC---ChH----------
Q 000696 901 LQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLA--SS---------G---QH---EPL---------- 953 (1349)
Q Consensus 901 ~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~--~~---------~---~~---~P~---------- 953 (1349)
||--..+.+-++- ..+.++.+.-+|+.+||.-.-+=-+++ .+ | +. -+.
T Consensus 447 --aAcY~~WAf~Ray---s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~ 521 (1133)
T KOG1943|consen 447 --AACYVCWAFARAY---SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVT 521 (1133)
T ss_pred --HHHHHHHHHHhcC---ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhh
Confidence 3444444444443 345566666667777766554422220 00 0 00 000
Q ss_pred --HHHHHHHHHHHHh-hcc-hHHHHHHHhc--CCCCChhhHHHHHHHHHHHhhhcCchhHH-HHHHHHhhhhcccCccch
Q 000696 954 --RAILTSFQAFCEC-VGD-LEMRKILARD--GEQNDKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQQRFQR 1026 (1349)
Q Consensus 954 --~~aleAlk~ll~~-~g~-~~~~~~L~~~--g~W~~~e~~~~gV~lLAr~m~~~~~~~~~-~i~~~L~~~L~s~~~~~R 1026 (1349)
+.+...+...+.. .|| ..+++++-.. --|+..-.+.-|.. |.+ +++..|.++. ..+--+++...++...-|
T Consensus 522 ~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a-L~~-Ls~~~pk~~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 522 NRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA-LHK-LSLTEPKYLADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred hhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH-HHH-HHHhhHHhhcccchhhhhhhhcCCChHHh
Confidence 1112222221111 111 1234444433 24664333333333 444 6666666655 455556666677778888
Q ss_pred HHHHHHHHHhhhcCCCh----hcHHHHHHHHH-------HhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHHHHH
Q 000696 1027 EAAAAALSEFVRYSGGF----DSLLEQMVEAL-------CRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLSVIL 1093 (1349)
Q Consensus 1027 i~a~af~sELl~~~~~~----~~l~~~~i~~L-------~~~l~D~~--~~VR~lslrGLgnl~~~~v~~~~~~lL~all 1093 (1349)
..++...+|++.....- ..+.++.+.-+ ....-+.- ..+|..-++++-++...|.+-....+.+...
T Consensus 600 ~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~ 679 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQ 679 (1133)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 88888888887753221 11222222222 22111111 4556666666655544333322222222221
Q ss_pred hhcc----CCChhHHHHHHHHHHHHhccCC---cCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchH
Q 000696 1094 ALLD----DLDESVQLTAVSCLLTILKSSS---KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1166 (1349)
Q Consensus 1094 ~~L~----d~d~~V~leAm~~L~~lL~~l~---~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1166 (1349)
.-+. +.+ .+.-+|..+++.+....- +....++..++ |--.=+.....+|..-+-..|.+..+.- ..
T Consensus 680 ~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~---ls~~~~~~~~~~r~g~~lal~~lp~~~i---~~ 752 (1133)
T KOG1943|consen 680 MLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRY---LSRLTKCSEERIRRGLILALGVLPSELI---HR 752 (1133)
T ss_pred HHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHH---HHHhcCchHHHHHHHHHHHHccCcHHhh---ch
Confidence 1121 222 466777777777754322 22111222222 2222233367788888888888775211 11
Q ss_pred HHHHHHHhhhhHHHHhccCC--ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000696 1167 AFLEQIHAMLPRLILHIYDD--DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1244 (1349)
Q Consensus 1167 ~~~eQv~~~LvpLLlHL~D~--~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~ 1244 (1349)
.+++.+ -.++++..-. .+.-++..-.++.+...-.+ ..++. -++++|.+.+.++|-.
T Consensus 753 ~~q~~l----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~---~~~~~---------~~~~k~~e~LL~~ldd----- 811 (1133)
T KOG1943|consen 753 HLQEKL----CKLVLELLPSDAWAEARQQNVKALAHVCKTVT---SLLFS---------ESIEKFRETLLNALDD----- 811 (1133)
T ss_pred HHHHHH----HHHHhccCcccccHHHHHHHHHHHHHHHHHHH---Hhhcc---------ccHHHHHHHHHHHHhh-----
Confidence 222222 3444444333 34444545445444332222 11221 2346666665555433
Q ss_pred HHHHHHHHHHhhcCCChh----HHHHHHHHHHhhhccCc-hhhhhhccHHHHHHHHHHHhcc---CCChhHHHHHHHHHH
Q 000696 1245 IDSYMGSTIQAFEAPWPI----IQANAIYFSSSILCLCD-DQHILSLFYTQVFGLLVVKLSQ---SADAIVRATCSSSLG 1316 (1349)
Q Consensus 1245 ~~~~l~~~l~ylkS~~~~----IR~~A~~fiG~l~~~~~-~~~~~~~~~e~l~~~L~~~Ll~---Dpdp~VR~~Aa~aL~ 1316 (1349)
|.-+.+.+ ||.+|+.-+-.+.-... +.. +|-+.+...+.. +.+ |.--..|..|++++.
T Consensus 812 ----------Yttd~rGDVGswVReaAm~al~~~~~~l~~p~~---ld~~~i~~~~~~-~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 812 ----------YTTDSRGDVGSWVREAAMKALSSLLDTLSSPKL---LDEDSINRIIRY-FVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred ----------cccccCccHHHHHHHHHHHHHHhhhhhhcCccc---ccHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHh
Confidence 66666644 68888877665543333 222 233333333333 333 233334667777766
Q ss_pred HHHHh
Q 000696 1317 WLLKS 1321 (1349)
Q Consensus 1317 ~l~k~ 1321 (1349)
.+...
T Consensus 878 qi~~~ 882 (1133)
T KOG1943|consen 878 QIVVH 882 (1133)
T ss_pred ceeec
Confidence 66544
No 120
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.51 E-value=11 Score=40.90 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHH-----HH------HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhh
Q 000696 1144 KMRRNAFAAFGALSNFGVGSQREAFL-----EQ------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1212 (1349)
Q Consensus 1144 ~vR~aAi~LfG~L~~~~~~~~~~~~~-----eQ------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~l 1212 (1349)
+||.+|+.+++++++..+.+.-..+- ++ .-.+|...+ ++|+++.||.++..++...-.-.+-.+..-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~i--l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCI--LKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHH--HcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 48999999999999963332211111 11 112334433 459999999999888766433222211111
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCC-ChhHHHHHHHHHHhhhccCchhhhhhccHHHH
Q 000696 1213 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQV 1291 (1349)
Q Consensus 1213 f~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~-~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l 1291 (1349)
+. ..++..+|-.|-..+...+++-+...+. ++ +.+ ...+-...-.-+..+++..|=+.+..--...+
T Consensus 79 -e~---~~~~~~sFtslS~tLa~~i~~lH~~Ll~-----~L---~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~ 146 (182)
T PF13251_consen 79 -EE---SKGPSGSFTSLSSTLASMIMELHRGLLL-----AL---QAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV 146 (182)
T ss_pred -Hh---cCCCCCCcccHHHHHHHHHHHHHHHHHH-----HH---hcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence 11 1134567777777777777764433322 22 222 22233334444556777776444333334667
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1292 FGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1292 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
++.+.. +..+-|+.||..+.-++|.+.
T Consensus 147 v~~v~~-~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 147 VTQVRP-LLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHH-HHhcCCCcHHHHHHHHHHHHH
Confidence 777888 678899999999999998876
No 121
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.32 E-value=32 Score=40.31 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=87.7
Q ss_pred hHHHHHHHHh-hhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----h
Q 000696 1006 EVQTICLILT-KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----H 1080 (1349)
Q Consensus 1006 ~~~~i~~~L~-~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~----~ 1080 (1349)
.+..++..++ |.+++.+..-|..|+-.++=+ +.....+-+.-+..+...++..++.||..|++++..+... .
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~---~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLC---CLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4557776665 999999999998888666542 1112233333344455555555999999999999877421 1
Q ss_pred h--------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCC---ChHHHH
Q 000696 1081 I--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRR 1147 (1349)
Q Consensus 1081 v--------~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede---~~~vR~ 1147 (1349)
. ......++..+...|++.++.+...|..|+.|++-.-.-.+...++-.+ +.-+|+.. +..+|.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L---ll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL---LLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH---HHHHcCcccCCcHHHHH
Confidence 1 1234578888999999888889999999999998653222212333333 23356553 344554
No 122
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.20 E-value=71 Score=39.99 Aligned_cols=296 Identities=15% Similarity=0.170 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCcc-chHHHHHHHHHhhhcCCC-hhcHHHHHHHHHHhhcCCCChhHH
Q 000696 989 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRF-QREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVR 1066 (1349)
Q Consensus 989 ~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~-~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR 1066 (1349)
...+..|++++..+....++.|.+....++...... .|.+|.-++.+.+.++.. .........+.+.+.-.|++---|
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 355666777777777677888887777777654433 488888888888887654 222223344555555555555667
Q ss_pred HHHhhhccCCcch------hhhhhHHHHHHHHH------------------hhc--cCCChhHHHHHHHHHHHHhcc---
Q 000696 1067 GLCLRGLVQIPSI------HIHQYATQVLSVIL------------------ALL--DDLDESVQLTAVSCLLTILKS--- 1117 (1349)
Q Consensus 1067 ~lslrGLgnl~~~------~v~~~~~~lL~all------------------~~L--~d~d~~V~leAm~~L~~lL~~--- 1117 (1349)
.-+|+.|.+=|.. ++.+....-++.++ .+. .+.++....+.+.-+.+++..
T Consensus 88 l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~ 167 (464)
T PF11864_consen 88 LEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFN 167 (464)
T ss_pred HHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCC
Confidence 7777777654432 22111111121111 000 011333455566666666543
Q ss_pred -CCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHH
Q 000696 1118 -SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRN 1196 (1349)
Q Consensus 1118 -l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~ 1196 (1349)
+++..++.++-+++.-.+. ....+++ .+++.+|..+..|+.=+. +.+ .++...|-.. |=.. .-|+.
T Consensus 168 ~l~e~~i~~lv~~i~~iC~~--Ts~~~di-~~~L~vldaii~y~~iP~-~sl-~~~i~vLCsi--~~~~------~l~~~ 234 (464)
T PF11864_consen 168 YLDEDEISSLVDQICTICKS--TSSEDDI-EACLSVLDAIITYGDIPS-ESL-SPCIEVLCSI--VNSV------SLCKP 234 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhc--cCcHHHH-HHHHHHHHHHHHcCcCCh-HHH-HHHHHHHhhH--hccc------ccchh
Confidence 3334444444443332111 2223444 677899999888765332 111 1111222211 0000 11111
Q ss_pred HHHhhhhhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhh
Q 000696 1197 TLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 1275 (1349)
Q Consensus 1197 tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~ 1275 (1349)
-| -+..++..|. + ...++.+|..|.+..+.. .+...+-+.|+.|+|.++
T Consensus 235 ---------~w~~m~nL~~S~~-g-------~~~i~~L~~iL~~~~~~~-------------~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 235 ---------SWRTMRNLLKSHL-G-------HSAIRTLCDILRSPDPQN-------------KRDINVLRGAVFFLRMLL 284 (464)
T ss_pred ---------HHHHHHHHHcCcc-H-------HHHHHHHHHHHcccCccc-------------cccHHHHhhHHHHHHHHH
Confidence 23 3344555442 1 245677777774333332 223344446999999887
Q ss_pred ccCchhhhhhccHHH--HHHHHHHHhccCCChhHHHHHHHHHHHHH-----Hhccccccc
Q 000696 1276 CLCDDQHILSLFYTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLL-----KSINSHSWR 1328 (1349)
Q Consensus 1276 ~~~~~~~~~~~~~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-----k~~~~~~~~ 1328 (1349)
...+.+....+.... +..+|... ++-+++.|-.-..+.+..+. +-.....|.
T Consensus 285 ~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 285 WGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred hccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 766555555554454 89999885 44455555544444443333 333445564
No 123
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.12 E-value=12 Score=47.37 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=122.2
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC-hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhh
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1084 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~ 1084 (1349)
.+.+++++++....++....|.-..-++.-++++... ...+...+...|..++.|-.|.||.-|+.+|..+-......-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 5889999999999999999999999999999886433 456777788899999999999999999999886642100000
Q ss_pred HHHHHHHHHhhcc-CCChhHHHHHHHHHH-------HHhccCCcCCcchhHHh-HHhhhcCcCCCCChHHHHHHHHHHHH
Q 000696 1085 ATQVLSVILALLD-DLDESVQLTAVSCLL-------TILKSSSKDAVEPILLN-LSVRLRNLQVSMNVKMRRNAFAAFGA 1155 (1349)
Q Consensus 1085 ~~~lL~all~~L~-d~d~~V~leAm~~L~-------~lL~~l~~~~~~~~l~~-i~~~lrpffede~~~vR~aAi~LfG~ 1155 (1349)
-.+.+++...++ |+++.|+-.||..++ .|+++..+ +...--. +=.++.| + -++|..+|.-+-.
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarD--V~~anRrlvY~r~lp---k--id~r~lsi~krv~ 233 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARD--VSGANRRLVYERCLP---K--IDLRSLSIDKRVL 233 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhh--hhHHHHHHHHHHhhh---h--hhhhhhhHHHHHH
Confidence 112333333333 455678887776543 34433221 1100000 0011112 2 2678888888877
Q ss_pred hhccCCCc----chHHHHHHHHh--------hhhHHHHhccCCCh-hHHHHHHHHHHh-hhhhhhh
Q 000696 1156 LSNFGVGS----QREAFLEQIHA--------MLPRLILHIYDDDL-SVRQACRNTLKQ-VAPFMEI 1207 (1349)
Q Consensus 1156 L~~~~~~~----~~~~~~eQv~~--------~LvpLLlHL~D~~~-~V~~ack~tL~~-~a~lL~~ 1207 (1349)
|..+|-.. -+.++.+.+.+ +++-||-.|.=++. +|+..+-.||+. .....++
T Consensus 234 LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 234 LLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhh
Confidence 77764322 23444455554 66666666666655 788888888887 4444343
No 124
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.78 E-value=2.1 Score=55.29 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=95.6
Q ss_pred ChhhHHHHHHHHHHHhh-hcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcC-CChhcHHHHHHHHHHhhcCCC
Q 000696 984 DKEKWINLIGDVAGCVS-IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GGFDSLLEQMVEALCRHVSDE 1061 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~-~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~~~~~l~~~~i~~L~~~l~D~ 1061 (1349)
...-|+.|...+-...- +--.|.++.++..++-.|.=++...|+.+.-.+.-++... .....-+.+++..|+.--+|+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 44566666665544321 1223678888888888888888888888887777776643 233344566777777766666
Q ss_pred C---hhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 000696 1062 S---PTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1112 (1349)
Q Consensus 1062 ~---~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~ 1112 (1349)
+ .+||..||++|+.++.. -...|++.++.|+...|||+-.-|+.||..+=.
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 5 78999999999988752 567899999999999999998899999988643
No 125
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.57 E-value=1.1 Score=44.27 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=69.7
Q ss_pred HHHHHhhcCC----CChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCc
Q 000696 1051 VEALCRHVSD----ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1123 (1349)
Q Consensus 1051 i~~L~~~l~D----~~~~VR~lslrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~ 1123 (1349)
++.+.+-+.| .+..-|+.+++|++.+-. ..+....+++..++..+++.+ +....|+++-...+..++..++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 3444444555 456669999999997743 377888899988888888753 7888899999999999999999
Q ss_pred chhHHhHHhhhcCcCC
Q 000696 1124 EPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1124 ~~~l~~i~~~lrpffe 1139 (1349)
++++-++..-+.|+++
T Consensus 91 ~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 91 GPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888888765
No 126
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.39 E-value=1.3 Score=43.81 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCCC---hh-HHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC
Q 000696 1050 MVEALCRHVSDES---PT-VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1122 (1349)
Q Consensus 1050 ~i~~L~~~l~D~~---~~-VR~lslrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~ 1122 (1349)
+++.+.+-+.|++ |. -|+-++|++|.+-. +.+..+.+++..++..+|+ .++....|+.+...++..+++.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4556666666766 32 38899999997642 3778888999999999997 45699999999999999999999
Q ss_pred cchhHHhHHhhhcCcCC
Q 000696 1123 VEPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1123 ~~~~l~~i~~~lrpffe 1139 (1349)
+++++-++.--+.|+++
T Consensus 90 l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 90 LGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999888887777765
No 127
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.21 E-value=1.6e+02 Score=41.04 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=119.6
Q ss_pred HHHHHHHH-HHhccCCCCCCCCchhhhHhHHHHHHHHhhhhc-ccCCCCChhHHHHHHHHhh-hccccCCCCcccHHHHH
Q 000696 465 DQLLDYIL-TLMGREENDSFADSSIELLHTQALALSACTTLV-TVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLI 541 (1349)
Q Consensus 465 ~eLl~~l~-~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~-~L~P~l~~e~~~~ll~~c~-~v~~lp~~~~~l~~~~~ 541 (1349)
.+++..++ .+|..- .+.. .. .++.|+..|.... +++| +....+..|+ .-++.- ....
T Consensus 180 ~e~L~~ll~~lv~~~-~~~~-~~------a~~la~~li~~~a~~~~~-----~i~~f~~~~~~~~~s~~-------~~~~ 239 (1266)
T KOG1525|consen 180 SELLDVLLENLVKPG-RDTI-KE------ADKLASDLIERCADNLED-----TIANFLNSCLTEYKSRQ-------SSLK 239 (1266)
T ss_pred HHHHHHHHHHhccCC-CCcc-HH------HHHHHHHHHHHhhhhhch-----hHHHHHHHHHhhccccc-------cchh
Confidence 46777666 444433 2322 22 5677777776644 3333 3445555555 222110 0111
Q ss_pred HHHHHHHHHHhhhcCCCCcccHHHHHHHHHhhHHHhcChhHHhhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000696 542 DNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 621 (1349)
Q Consensus 542 ~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 621 (1349)
.-..+++-.+-.. .|+-|..++.+|.-|++|+++.+|..|+..+-+++..+-. |.
T Consensus 240 ~~~he~i~~L~~~-------~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~------~l------------ 294 (1266)
T KOG1525|consen 240 IKYHELILELWRI-------APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS------QL------------ 294 (1266)
T ss_pred hHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh------hh------------
Confidence 2233333334333 3688999999999999999999999999999999884421 10
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhh
Q 000696 622 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 701 (1349)
Q Consensus 622 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 701 (1349)
+..-+ .+-..+.=||.|-..+||...++++...|- .++.+. .+ ...
T Consensus 295 --------~~~~~--------------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-----~~~~~~---~~----~~~ 340 (1266)
T KOG1525|consen 295 --------SETYD--------------DLWSAFLGRFNDISVEVRMECVESIKQCLL-----NNPSIA---KA----STI 340 (1266)
T ss_pred --------cccch--------------HHHHHHHHHhccCChhhhhhHHHHhHHHHh-----cCchhh---hH----HHH
Confidence 11111 122344558999999999999999876631 121110 00 011
Q ss_pred hhhcHHHHHHhccCCCCChhHHHH--------HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000696 702 LSSLEDVIAILRSDASIDPSEVFN--------RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 772 (1349)
Q Consensus 702 l~~l~d~~~~l~~~~~~~~~~~~~--------~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 772 (1349)
...+++. + .|+..-.. .+.+ +...+.+ +++.-+-|.+.|....+..-|..-|..+.+.
T Consensus 341 ~~~l~~~------~--~D~~~rir~~v~i~~~~v~~-~~l~~~~----~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 341 LLALRER------D--LDEDVRVRTQVVIVACDVMK-FKLVYIP----LLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHhh------c--CChhhhheeeEEEEEeehhH-hhhhhhH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1222211 1 12111000 0111 1111111 2667788999999988888888888888874
No 128
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.85 E-value=41 Score=43.28 Aligned_cols=267 Identities=14% Similarity=0.199 Sum_probs=148.3
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhh
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQ 1083 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~~ 1083 (1349)
++--+++..-+=|+.|+|--|-...-|++.| .+.++++.++-...+.+.++++-||+-|+-+++.|-.. +.-+
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p 170 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP 170 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC
Confidence 3445566666778888888888888887764 34577888888888999999999999999888876321 2112
Q ss_pred hHHHHHHHHH-----------------------------hhccC---CCh---hHHHHHHHHHHH------------Hhc
Q 000696 1084 YATQVLSVIL-----------------------------ALLDD---LDE---SVQLTAVSCLLT------------ILK 1116 (1349)
Q Consensus 1084 ~~~~lL~all-----------------------------~~L~d---~d~---~V~leAm~~L~~------------lL~ 1116 (1349)
..|.++...+ +..++ -++ .|+.|-+.-... |..
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 2222332222 22222 111 122222222111 111
Q ss_pred cCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcch----------HHHHHHHHhhh-hHHHHhccC
Q 000696 1117 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR----------EAFLEQIHAML-PRLILHIYD 1185 (1349)
Q Consensus 1117 ~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~----------~~~~eQv~~~L-vpLLlHL~D 1185 (1349)
.+... -+.+...-|..+-.++.++.. +++||=.+..=+.+-.+..-+ .+.-+-|++.+ ...|--|.-
T Consensus 251 lL~st-ssaV~fEaa~tlv~lS~~p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 251 LLSST-SSAVIFEAAGTLVTLSNDPTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred HHhcC-CchhhhhhcceEEEccCCHHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 11111 222333334444444444433 333332222222221111101 11112233333 344445666
Q ss_pred CChhHHHHHHHHHHhhhhhhhh-hhh-----hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCC
Q 000696 1186 DDLSVRQACRNTLKQVAPFMEI-GVY-----GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP 1259 (1349)
Q Consensus 1186 ~~~~V~~ack~tL~~~a~lL~~-~l~-----~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~ 1259 (1349)
++-+|+++|=.--..++..=+. ++. ++-.++.-+.+++-.|+..+-.......-+||+.....+.-.+.|+.|.
T Consensus 329 ~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS 408 (948)
T ss_pred ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC
Confidence 7888988775433333322222 222 2333333223345568888877788889999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCc
Q 000696 1260 WPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1260 ~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
++.--..-..|+--.+.-+|
T Consensus 409 N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCc
Confidence 99777777788887777776
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.42 E-value=8.4 Score=44.32 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=109.6
Q ss_pred HHHhhhhcccCccchHHHHHHHHHhhhcCC---ChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh--hhhHH
Q 000696 1012 LILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI--HQYAT 1086 (1349)
Q Consensus 1012 ~~L~~~L~s~~~~~Ri~a~af~sELl~~~~---~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v--~~~~~ 1086 (1349)
..|.++|.|+++..|.-|+-++++.+..-. ....-.+.+++.+.+++.|. +.+... ++|+..+...+. .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 457899999999999999999999998632 23333466889999999654 445555 888876653211 11234
Q ss_pred HHHHHHHhhccCC--ChhHHHHHHHHHHHHhccCCc--CCcchhHHhHHhhhcCcCCCCC-hHHHHHHHHHHHHhhccCC
Q 000696 1087 QVLSVILALLDDL--DESVQLTAVSCLLTILKSSSK--DAVEPILLNLSVRLRNLQVSMN-VKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1087 ~lL~all~~L~d~--d~~V~leAm~~L~~lL~~l~~--~~~~~~l~~i~~~lrpffede~-~~vR~aAi~LfG~L~~~~~ 1161 (1349)
.++.++....+-. -...+......|..++..-.. +..+.- ....+-...+.|+ |.-=.-+|.++-.+.+.-.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~---fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDD---FVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 4555554433221 134778888888777765211 111111 1222233556665 4444557777777765211
Q ss_pred CcchHHHHHHHH---hhhhHHHHhccCCCh------hHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 000696 1162 GSQREAFLEQIH---AMLPRLILHIYDDDL------SVRQACRNTLKQVAPFMEIGVYGIFNS 1215 (1349)
Q Consensus 1162 ~~~~~~~~eQv~---~~LvpLLlHL~D~~~------~V~~ack~tL~~~a~lL~~~l~~lf~~ 1215 (1349)
-..+.|+++ .+=.|.-++=--.+| +.+.+.+.+|.....|-.+-+.-++.|
T Consensus 157 ---~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleK 216 (262)
T PF14500_consen 157 ---ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEK 216 (262)
T ss_pred ---cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHH
Confidence 244555544 444566565543333 444444444443223333344555555
No 130
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.18 E-value=2.9 Score=41.34 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHH
Q 000696 1101 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1180 (1349)
Q Consensus 1101 ~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLL 1180 (1349)
..-...++.+++.++. +....+.++..+|.--|+...+.+ ++|..|++.+..+.+.-+..+-.++.+|+...++|+.
T Consensus 29 ~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999 778899999999999999998876 9999999999999998777888899999998888864
No 131
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.95 E-value=4.3 Score=43.31 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC------hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000696 1005 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG------FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1349)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~------~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1349)
..++..+..+..+|+|.....|..++..+...+..+.- ...+++.++..|.+ ++.+.++..++..|+.+-.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 36888889999999999999999999988888876421 23445555555544 4567889999999987632
Q ss_pred ----------hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh
Q 000696 1079 ----------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN 1129 (1349)
Q Consensus 1079 ----------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~ 1129 (1349)
+-.....+.++.+++..+++ +.+...++.+|+.++..- ...++|+.-+
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~k 155 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANK 155 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHH
Confidence 12355668888888888775 678889999999999864 3445554433
No 132
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.89 E-value=5.4 Score=50.08 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCC
Q 000696 1143 VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1221 (1349)
Q Consensus 1143 ~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~ 1221 (1349)
..+|+||-..|-.+.+.+..-.-..=...|..-||+|+ .||+..|-.+.-.|++... ++. .++.-
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp~~~i~~~~lgai~NlV--mefs~~ksk--------- 456 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDPEIMIMGITLGAICNLV--MEFSNLKSK--------- 456 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCcchhHHHHHHHHHHHHH--hhcccHHHH---------
Confidence 46788888888777763110000011245667777776 7999888887655555533 111 22211
Q ss_pred CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000696 1222 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1301 (1349)
Q Consensus 1222 ~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1301 (1349)
|+ .+-++.+...|..++.+..|+.+.|++-.++.+.+.....+.+...-.+.+.. +-.
T Consensus 457 -------fl--------------~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~-l~n 514 (678)
T KOG1293|consen 457 -------FL--------------RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILD-LIN 514 (678)
T ss_pred -------HH--------------HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHH-HHh
Confidence 11 11246667889999999999999999999988888666665555544555666 789
Q ss_pred CCChhHHHHHHHHHHHHH
Q 000696 1302 SADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1302 Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
|||+.|+..|-+-|..|.
T Consensus 515 d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999998777666553
No 133
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=11 Score=46.36 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=88.0
Q ss_pred CcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc--cCCChhHHHHHHHHHHhhhhhhhhhhhhhh
Q 000696 1136 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1213 (1349)
Q Consensus 1136 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL--~D~~~~V~~ack~tL~~~a~lL~~~l~~lf 1213 (1349)
.+..|..+-+|..-+...|- ++++... ...|.=+||. .|.|.+|+.|+--||+-++
T Consensus 523 ell~d~ds~lRy~G~fs~al--Ay~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc----------- 580 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLAL--AYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVC----------- 580 (926)
T ss_pred HHhcCchHHhhhccHHHHHH--HHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeE-----------
Confidence 45667788899886655443 4443333 2567778885 8999999999988877544
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHH
Q 000696 1214 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1293 (1349)
Q Consensus 1214 ~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~ 1293 (1349)
+.| + + . .+.+.-...+|..+++|++.|..+|.......++- ...
T Consensus 581 ----~~D-~----~-~------------------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------a~d 624 (926)
T COG5116 581 ----CDD-R----D-L------------------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------ATD 624 (926)
T ss_pred ----ecC-c----c-h------------------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------HHH
Confidence 111 1 1 1 11122224577889999999999997766555333 234
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHhccc
Q 000696 1294 LLVVKLSQSADAIVRATCSSSLGWLLKSINS 1324 (1349)
Q Consensus 1294 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1324 (1349)
-|.. |-.||...||..|-.|++.+..-+|-
T Consensus 625 iL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 625 ILEA-LMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HHHH-HhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 4566 78899999999999999998866654
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.29 E-value=1.5e+02 Score=38.79 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=125.7
Q ss_pred HHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHH
Q 000696 1028 AAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTA 1107 (1349)
Q Consensus 1028 ~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leA 1107 (1349)
.-+..-++++... ....-++...+..|+++-...|--=+.|++-++...-.+...+ .+.++-..+.....-.+..|
T Consensus 227 ~lir~~~~~l~~~---~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaA 302 (865)
T KOG1078|consen 227 MLIRIASELLKEN---QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAA 302 (865)
T ss_pred HHHHHHHHHhhhc---ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHH
Confidence 3334445555433 1222345678888888888888877888777776543344444 45555555555556688899
Q ss_pred HHHHHHHhccCCcCCcchhHHhHH-hhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCC
Q 000696 1108 VSCLLTILKSSSKDAVEPILLNLS-VRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1186 (1349)
Q Consensus 1108 m~~L~~lL~~l~~~~~~~~l~~i~-~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~ 1186 (1349)
+.+|.++-..-.. .++.| .-+-++..|.|-.+---||.. |.+.|..+..+.+.+|+- ..+--+.|+
T Consensus 303 vRtLnkvAm~~P~------~v~~cN~elE~lItd~NrsIat~AITt---LLKTG~e~sv~rLm~qI~----~fv~disDe 369 (865)
T KOG1078|consen 303 VRTLNKVAMKHPQ------AVTVCNLDLESLITDSNRSIATLAITT---LLKTGTESSVDRLMKQIS----SFVSDISDE 369 (865)
T ss_pred HHHHHHHHHhCCc------cccccchhHHhhhcccccchhHHHHHH---HHHhcchhHHHHHHHHHH----HHHHhcccc
Confidence 9999998764322 12222 234678888877776667665 445455667777777754 345567899
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcC
Q 000696 1187 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA 1258 (1349)
Q Consensus 1187 ~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS 1258 (1349)
..-|+-.+-.+|+..-|..+..+-..+.+- +.++.++.|-.-+-+...-.++..|+.=..=+...-.|+.|
T Consensus 370 FKivvvdai~sLc~~fp~k~~~~m~FL~~~-Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED 440 (865)
T KOG1078|consen 370 FKIVVVDAIRSLCLKFPRKHTVMMNFLSNM-LREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED 440 (865)
T ss_pred ceEEeHHHHHHHHhhccHHHHHHHHHHHHH-HHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh
Confidence 888888888888888886555333333322 23345565532222333334455555444444444444443
No 135
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.68 E-value=71 Score=36.84 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=128.9
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hh-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000696 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI----HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1349)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~----~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1127 (1349)
.|...+.++++.+|.-|++-|+++... .. ++.+..+++-+.+.|+ |...+..|+.||..+.+.-.. .....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~--~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNF--SPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCC--ChhhH
Confidence 466778999999999999988866432 22 2234555566666664 566777778888888743221 11122
Q ss_pred HhHHhhhcCcC--CCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHH--HHHHHHHHhhhh
Q 000696 1128 LNLSVRLRNLQ--VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR--QACRNTLKQVAP 1203 (1349)
Q Consensus 1128 ~~i~~~lrpff--ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~--~ack~tL~~~a~ 1203 (1349)
..++..+..-. ..-....|...+.++..+... ....+ ...-...+.-++|+-|.+.+=+ ..+=.-+..+..
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~----~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN----HREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH----hHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 23333222111 233467899999999998862 11222 2233445556666666644432 111111111111
Q ss_pred hh--hhhhhhhhcc----------ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 000696 1204 FM--EIGVYGIFNS----------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1271 (1349)
Q Consensus 1204 lL--~~~l~~lf~~----------~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fi 1271 (1349)
.+ .-...++|.. ..=+|..+++-++-...+-.+|. ..|.-..+-+...+.=+.|+.+.+|.-+...+
T Consensus 154 ~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 154 EFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred hcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 11 1122333331 11112224555666666666665 44555666677777888999999999888888
Q ss_pred HhhhccCchhhhhhccHHHHHHHHH
Q 000696 1272 SSILCLCDDQHILSLFYTQVFGLLV 1296 (1349)
Q Consensus 1272 G~l~~~~~~~~~~~~~~e~l~~~L~ 1296 (1349)
..-+..++.+.. ......+.++|+
T Consensus 233 ~~c~~~y~~~~~-~~~~~~iw~~lk 256 (262)
T PF14500_consen 233 KACIENYGADSL-SPHWSTIWNALK 256 (262)
T ss_pred HHHHHHCCHHHH-HHHHHHHHHHHH
Confidence 877776664433 123355666554
No 136
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.20 E-value=2.3 Score=53.75 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=123.8
Q ss_pred hHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhh
Q 000696 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQY 1084 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~ 1084 (1349)
....|+-.+.++..+++..-|+.=.--+-+++.+- ..+.+.+++.-.+..++.|.|+++|...++.+..++.- .-+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 44556666667777766666665444444444332 23456677889999999999999999999999887753 11123
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcc
Q 000696 1085 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1164 (1349)
Q Consensus 1085 ~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1164 (1349)
...++..+...--|.+..++--.--+|++|-..+....-..++..=-. | -..|.-..=|.++.-.|-....+= .
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aft--r-alkdpf~paR~a~v~~l~at~~~~---~ 479 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFT--R-ALKDPFVPARKAGVLALAATQEYF---D 479 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhh--h-hhcCCCCCchhhhhHHHhhccccc---c
Confidence 344556555555555566888888888888887654332333322212 2 122333456788887777766532 2
Q ss_pred hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh
Q 000696 1165 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1207 (1349)
Q Consensus 1165 ~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1207 (1349)
......||+-+++|+.. |++..|+..+..++..+=.-++-
T Consensus 480 ~~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTV---DPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhhhcccccccccc---CcccchhhHHHHHHHHHHhhhhh
Confidence 33455677777777765 99999999999988887665544
No 137
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=83.09 E-value=97 Score=39.55 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=142.7
Q ss_pred HHHHhhcCCCChhHHHHHhhh---ccCCcchhhhhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhH
Q 000696 1052 EALCRHVSDESPTVRGLCLRG---LVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1349)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrG---Lgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l 1127 (1349)
..|.+.+=.|+.....++..- ++..+..+.-.+-=..|-.++..+-... ..+.+..+ |+++...+.+.+-.
T Consensus 269 ~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~L~~L--L~Rl~~~m~~~~q~--- 343 (559)
T PF14868_consen 269 RFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLINLSIL--LRRLFFLMAPDHQS--- 343 (559)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhhHHHH--HHHHHHhcCHHHHH---
Confidence 466667777888888888886 5555543221111122333344443211 22344444 77777766655443
Q ss_pred HhHHhhhcCc-------------CCCCChHHHHHHHHHHHHhh-----ccCC-CcchHHHHHHHHhhhhHHHHhccCCCh
Q 000696 1128 LNLSVRLRNL-------------QVSMNVKMRRNAFAAFGALS-----NFGV-GSQREAFLEQIHAMLPRLILHIYDDDL 1188 (1349)
Q Consensus 1128 ~~i~~~lrpf-------------fede~~~vR~aAi~LfG~L~-----~~~~-~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1188 (1349)
.+..+..|. |+.=.+++|.-+..=..+.+ ++-. +...-.-.+++...+-.++...++...
T Consensus 344 -~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~ 422 (559)
T PF14868_consen 344 -EFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGS 422 (559)
T ss_pred -HHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhccccc
Confidence 333333443 12233445554432211111 1111 233334446666667777777777766
Q ss_pred hHHHHHHHHHHhhhhhhhhhh--hhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcC-CChhHH
Q 000696 1189 SVRQACRNTLKQVAPFMEIGV--YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEA-PWPIIQ 1264 (1349)
Q Consensus 1189 ~V~~ack~tL~~~a~lL~~~l--~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~-~~~~~~~l~~~l~ylkS-~~~~IR 1264 (1349)
.+-.....++..+..-+...+ +.+-..+.++ -.+... -.+...+.+.. |+.+...+......+++ |-..+|
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~----~~~~~l-L~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~k 497 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQ----QTLSLL-LSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVK 497 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHH----HHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccch
Confidence 666655555555554332232 2221111000 011222 23334444444 77777777776777744 445599
Q ss_pred HHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhccc
Q 000696 1265 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1324 (1349)
Q Consensus 1265 ~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1324 (1349)
-+++.|+|.+++...++.....-...+..-+-. |+.|.+..|...|-+|.|+|...++.
T Consensus 498 l~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~-LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 498 LALLDFLSSLGKLFIPESDQNPVSPALSELFHM-LLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhccccCCccccchhhhHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 999999999998666544432223444444445 89999999999999999999877664
No 138
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.49 E-value=24 Score=40.99 Aligned_cols=73 Identities=12% Similarity=-0.055 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCChh-HHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHhc
Q 000696 1248 YMGSTIQAFEAPWPI-IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1322 (1349)
Q Consensus 1248 ~l~~~l~ylkS~~~~-IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1322 (1349)
.+.+...|+++..++ +=+-|+.=||+.+..+| +-+.-++.-.+-..+.+ |...|||.||--|-+|+..+-.+.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~vl~Kyg~k~~im~-L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAVLSKYGVKEIIMN-LINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHHHHHhhhHHHHHH-HhcCCCchhhHHHHHHHHHHHhhh
Confidence 466778899998888 56678888999999887 33334566667777888 888999999999999988765443
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.90 E-value=1.1e+02 Score=42.49 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHH
Q 000696 955 AILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 1034 (1349)
Q Consensus 955 ~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~s 1034 (1349)
..++-||.+..| .+.|++++ .-.+++.-+|.+++.. .+|+.++...|+-.+..++
T Consensus 21 ell~rLk~l~~~------l~~~~qd~------~~~~~~~pl~~~l~~~-------------~~L~h~d~dvrllvacCvs 75 (1266)
T KOG1525|consen 21 ELLKRLKKLANC------LASLDQDN------LDLASLLPLADHLIKD-------------FLLKHKDKDVRLLVACCVS 75 (1266)
T ss_pred HHHHHHHHHHHH------HhhcccCc------hhHHHHHHHHHHHhhH-------------HHhcCCCcChhHHHHHHHH
Confidence 567777766643 33345432 4456777788877652 3577889999999999999
Q ss_pred Hhhhc--CCC---hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhH---HHH---HHHHHhhccCCC-hh
Q 000696 1035 EFVRY--SGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYA---TQV---LSVILALLDDLD-ES 1102 (1349)
Q Consensus 1035 ELl~~--~~~---~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~---~~l---L~all~~L~d~d-~~ 1102 (1349)
|+++- |.. .. -++.+...+.+ .++|||......-.+|. .++ -.+++ +++.| ++
T Consensus 76 eilRi~aPeaPy~~~-~lkdIf~~~~~------------q~~gL~d~~sp~f~r~~~lletl~~~k~~l~--~~l~d~~e 140 (1266)
T KOG1525|consen 76 EILRIYAPEAPYTDE-QLKDIFQLILS------------QFSGLGDVESPYFKRYFYLLETLAKVKFCLL--MLLEDCQE 140 (1266)
T ss_pred HHHHHhCCCCCCcHH-HHHHHHHHHHH------------HHhhccCCCCcchhhHHHHHHHHHHhHHHhe--eeccchHH
Confidence 99993 322 22 33333333322 34688877543111111 111 11222 22222 34
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh
Q 000696 1103 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1182 (1349)
Q Consensus 1103 V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1182 (1349)
.+-+-....=+++..--.+.+-. + +.+++.+..-..... . ..|.-++.|
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~-~----------------------~~i~~~li~e~d~v~-----~---e~L~~ll~~ 189 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFN-M----------------------LDIAIMLITEEDTVQ-----S---ELLDVLLEN 189 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHH-H----------------------HHHHHHHHHhhccch-----H---HHHHHHHHH
Confidence 55555555555553321221111 1 122222222111100 0 233334444
Q ss_pred ccCCChh----HHHHHHHHHHhhhhhhhhhhhhhhccccCCCC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhc
Q 000696 1183 IYDDDLS----VRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE 1257 (1349)
Q Consensus 1183 L~D~~~~----V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~-~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylk 1257 (1349)
|--+.++ -..-+..-+.+||.-+...+...+++...... ..++-..++.++.-.|-.-.|+.+.-.+.+.-.-+.
T Consensus 190 lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~ 269 (1266)
T KOG1525|consen 190 LVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELL 269 (1266)
T ss_pred hccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4444433 33344455777887666644444443322221 334444555666667777778888888889888999
Q ss_pred CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1258 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1258 S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
|.+...|--|+..+|.+......+.- -....++.++.. =..|-++.||..+.+......
T Consensus 270 se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~-r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 270 SEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLG-RFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHH-HhccCChhhhhhHHHHhHHHH
Confidence 99999999999999998876654332 223567888888 489999999999988766554
No 140
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.11 E-value=28 Score=40.38 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=38.7
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000696 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1349)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1115 (1349)
-+-+-+.++||.||+.|++-+.++..+ -..+|....+..+...+.|.+. +-.|..+|.++-
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH
Confidence 344556999999999999877665432 3345566667777777666554 444444444444
No 141
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.08 E-value=10 Score=46.76 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=88.6
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 000696 1096 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1174 (1349)
Q Consensus 1096 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1174 (1349)
+.|.|+..+...|-+++---.--+.-+ +.-++.|. ..|.+++||.+|.-.+|=++= + +. .
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GTgn~~-------vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~--D~--------~ 585 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGTGNLG-------VVSTLLHYAVSDGNDDVRRAAVIALGFVCC--D--DR--------D 585 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcCCcch-------hHhhhheeecccCchHHHHHHHHheeeeEe--c--Cc--------c
Confidence 444455555555555444332222222 22233344 689999999999999998763 1 11 2
Q ss_pred hhhHHHHhccCC-ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000696 1175 MLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1253 (1349)
Q Consensus 1175 ~LvpLLlHL~D~-~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l 1253 (1349)
.+|.-+--|.|. |+-||-....||+..+.- .|. ....++...
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag---------------~G~-----~~a~diL~~----------------- 628 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAG---------------TGD-----KVATDILEA----------------- 628 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcC---------------Ccc-----HHHHHHHHH-----------------
Confidence 445555555555 889999999998874431 111 122233332
Q ss_pred HhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 000696 1254 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS--ADAIVRATCSSSLG 1316 (1349)
Q Consensus 1254 ~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D--pdp~VR~~Aa~aL~ 1316 (1349)
..+++...+|++|++-.|.++-...++.-. .+..+.+.+.. +-.| ++-.+.--|.-|-|
T Consensus 629 -L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp--~v~~I~k~f~~-vI~~Khe~glaklGA~laqG 689 (926)
T COG5116 629 -LMYDTNDFVRQSAMIAVGMILMQCNPELNP--NVKRIIKKFNR-VIVDKHESGLAKLGAVLAQG 689 (926)
T ss_pred -HhhCcHHHHHHHHHHHHHHHHhhcCcccCh--hHHHHHHHHHH-HHhhhhHhHHHHHHHHHHhh
Confidence 346788889999999999775444333332 22444444444 3322 34444444444433
No 142
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.63 E-value=15 Score=46.31 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCCh----h---cHHHHHHHHHHhhcCCCCh
Q 000696 991 LIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF----D---SLLEQMVEALCRHVSDESP 1063 (1349)
Q Consensus 991 gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~----~---~l~~~~i~~L~~~l~D~~~ 1063 (1349)
.|.+-.--++.-.|..+-+=+.++..+|+|..-.-|..-+-+++.++-+.... + .-+..++..|.+++.|.+|
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 34444444444445555566778888999888888876665555554432111 1 1234588999999999999
Q ss_pred hHHHHHhhhccCCcc--hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 000696 1064 TVRGLCLRGLVQIPS--IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1349)
Q Consensus 1064 ~VR~lslrGLgnl~~--~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~ 1119 (1349)
.+|--|++|+..+-. .+-..-+..+..-....+.|...-|+-.|+..++++|-.=+
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 999999999986642 13333345567777788888888899999999999986533
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.99 E-value=2e+02 Score=35.34 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhc----------CCC----hhcHHHH
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY----------SGG----FDSLLEQ 1049 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~----------~~~----~~~l~~~ 1049 (1349)
......+...-++++++-+..+....++..++..+.+ .+..+.+|-+| .-++.. ... .+-+...
T Consensus 246 ~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f-~il~~d~~~~l~~~~~a~vklLykQR~F~~ 323 (415)
T PF12460_consen 246 LRPQALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQAAKAF-GILLSDSDDVLNKENHANVKLLYKQRFFTQ 323 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHH-hhHhcCcHHhcCccccchhhhHHhHHHHHH
Confidence 3344555666688998888888899999999999988 22233444333 333332 111 2334455
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000696 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1349)
Q Consensus 1050 ~i~~L~~~l~D~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1118 (1349)
++-.|.++.++.+...|.-.+.||+++..+ -+..+.+.++|-++.+|+-.|..+...++.+|..++..-
T Consensus 324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 778889999988888999999999977644 346677899999999998888889999999999999865
No 144
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.96 E-value=63 Score=38.08 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=83.5
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc---hhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcc
Q 000696 1088 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE---PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1164 (1349)
Q Consensus 1088 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~---~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1164 (1349)
....++..++..|..+...|...|+.++..-+..... ..+..+..-++......+.++...|+.+++.|.+. ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chh
Confidence 4556666666677889999999999999887666554 45555555566666667788889999999999972 223
Q ss_pred hHHHHH-HHHhhhhHHHHhcc-CCChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000696 1165 REAFLE-QIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1165 ~~~~~e-Qv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~ 1240 (1349)
+..|.+ .....+++++--.. ..+....+- .+-..-|.=+|-- +..+-+.++ | ++..++..+...
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql-~Y~~ll~lWlLSF~~~~~~~~~~~---------~--~i~~L~~i~~~~ 251 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQL-QYQALLCLWLLSFEPEIAEELNKK---------Y--LIPLLADILKDS 251 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHTTSHHHHHHHHTT---------S--HHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhH-HHHHHHHHHHHhcCHHHHHHHhcc---------c--hHHHHHHHHHhc
Confidence 333333 33334444331000 122222222 2222222211111 222222221 1 667888888888
Q ss_pred CcchHHHHHHHHH-HhhcCCChh
Q 000696 1241 FPSRIDSYMGSTI-QAFEAPWPI 1262 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l-~ylkS~~~~ 1262 (1349)
-.+++-...-.++ +.+..+...
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccchHHHHHHHHHHHHHhccHHH
Confidence 8999988844444 477766665
No 145
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.82 E-value=2.8e+02 Score=36.41 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=67.2
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHhhhccccccc------chhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 000696 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET------DVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1349)
Q Consensus 742 ~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~------~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~ 815 (1349)
++|..++..+.--+-++...|.+++..++..||.++... -|+.+++.+.. ..+-+|..++=-++.|.+-
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----srE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----SREPIRNEAILLLSELVKD 196 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----hhhhhchhHHHHHHHHHcc
Confidence 566666667766677888999999999999999998532 14444444433 2344677777777777655
Q ss_pred cC--ch-hHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCccc-----HHHHHHHHHHHHccC
Q 000696 816 TN--SK-IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVL-----SFLFLEHLISALNQT 875 (1349)
Q Consensus 816 h~--~~-vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l-----~~~vL~~LL~~L~~~ 875 (1349)
.+ ++ |+|+.. ++|++.++..++.+ +..-|-.|.-.|+++
T Consensus 197 n~~IQKlVAFENa---------------------FerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 197 NSSIQKLVAFENA---------------------FERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CchHHHHHHHHHH---------------------HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 43 33 444433 45678888777733 233344444444444
No 146
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.31 E-value=54 Score=38.89 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=87.2
Q ss_pred ccCccchHHHHHHHHHhhhcCCChhcHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch------hhhhhHHHHHHHH
Q 000696 1020 RQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI------HIHQYATQVLSVI 1092 (1349)
Q Consensus 1020 s~~~~~Ri~a~af~sELl~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~lslrGLgnl~~~------~v~~~~~~lL~al 1092 (1349)
+..-..+..|.--+-+++.+-.....+... -+..+...++++++.+|+.|++=+|..... .+-.+ -.++.+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHH
Confidence 444555677776677776653332222211 223444488999999999999999977643 22222 246666
Q ss_pred HhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCC--CChHHHHHHHHHHHHhhc
Q 000696 1093 LALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1093 l~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed--e~~~vR~aAi~LfG~L~~ 1158 (1349)
+..|...+ ..+.-.|+.+++.++..-....-.-+.++=..-|++..++ .+..++..|+.|++.|..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 66666333 4588899999999988644332222222223445777887 667778889999999997
No 147
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.01 E-value=11 Score=46.77 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhcc---
Q 000696 1228 TFVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ--- 1301 (1349)
Q Consensus 1228 ~f~~~l~k~L~~~~~~---~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~--- 1301 (1349)
.|+..|..|.+++.|+ -+.-++...+..+.|+...+|-.....+..+..... ++| |.+++.|..+|.+
T Consensus 69 ~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-----eID-e~l~N~L~ekl~~R~~ 142 (885)
T COG5218 69 SFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-----EID-EVLANGLLEKLSERLF 142 (885)
T ss_pred HHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-----hHH-HHHHHHHHHHHHHHHh
Confidence 3555556666666665 345556666778999999999999888887776553 222 6677776665543
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 000696 1302 SADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1302 Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
|.+|.||.-|..+|.+++.
T Consensus 143 DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 143 DREKAVRREAVKVLCYYQE 161 (885)
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 9999999999999999983
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.74 E-value=4.2 Score=51.50 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHh-hcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1247 SYMGSTIQA-FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1247 ~~l~~~l~y-lkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
.-+.+.+.| ..++..++|++|+.-+|+++..-| +++...+.. |...-.|-||..||-|||..+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~l-Lses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSL-LSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHH-HhhhcChhhhhhHHHHHhhhh
Confidence 345556666 778999999999999999887655 444555555 778899999999999999876
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.69 E-value=79 Score=38.36 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 000696 1258 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1315 (1349)
Q Consensus 1258 S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1315 (1349)
+..+-+|+.|.+|+-.+-+.++.++. ..+++.+.. .+++++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~-~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVN-HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHH-HTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHH-HhCCCCcchhhhhhhhC
Confidence 56778999999999988888887765 667888999 89999999999999884
No 150
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.69 E-value=3e+02 Score=35.74 Aligned_cols=258 Identities=17% Similarity=0.149 Sum_probs=141.3
Q ss_pred chHHHHHHHHHhhhcCCC---hhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCCh
Q 000696 1025 QREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDE 1101 (1349)
Q Consensus 1025 ~Ri~a~af~sELl~~~~~---~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~ 1101 (1349)
.|--|+..|-.|.++..+ ...+.+.++..| .|.+..|--. ...+++++..--.+.-.
T Consensus 164 vkqkaALclL~L~r~spDl~~~~~W~~riv~LL----~D~~~gv~ta----------------~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLL----DDQHMGVVTA----------------ATSLIEALVKKNPESYK 223 (938)
T ss_pred HHHHHHHHHHHHHhcCccccChhhHHHHHHHHh----Cccccceeee----------------hHHHHHHHHHcCCHHHh
Confidence 355555555666665433 235666555544 5544222111 23445555554433334
Q ss_pred hHHHHHHHHHHHHhccCCcC--C------cchh-HHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC------CcchH
Q 000696 1102 SVQLTAVSCLLTILKSSSKD--A------VEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV------GSQRE 1166 (1349)
Q Consensus 1102 ~V~leAm~~L~~lL~~l~~~--~------~~~~-l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~------~~~~~ 1166 (1349)
..+.-|+.-|+++....+-. + -.|- .++++--|.-+=.-|++..|+.-++..-.+..... .....
T Consensus 224 ~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~ 303 (938)
T KOG1077|consen 224 TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHS 303 (938)
T ss_pred hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhh
Confidence 46667777777776654422 0 0122 23333223333345668899999999888886322 11122
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchH
Q 000696 1167 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRI 1245 (1349)
Q Consensus 1167 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~-~~~~ 1245 (1349)
--++-|+=..+.|..|+ |++++.-..|-..|+. |+.. + +-.+.|=. +..+|+....++ .+.+
T Consensus 304 na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~---fls~--------r----E~NiRYLa-LEsm~~L~ss~~s~dav 366 (938)
T KOG1077|consen 304 NAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQ---FLSH--------R----ETNIRYLA-LESMCKLASSEFSIDAV 366 (938)
T ss_pred hhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH---Hhhc--------c----cccchhhh-HHHHHHHHhccchHHHH
Confidence 23345666778999998 5555544444333332 2221 1 12334432 245677666555 5677
Q ss_pred HHHHHHHHHhhc-CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH-HHhcc
Q 000696 1246 DSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL-LKSIN 1323 (1349)
Q Consensus 1246 ~~~l~~~l~ylk-S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l-~k~~~ 1323 (1349)
..+..+.+.-+| .+...||+-|+-++=.+..-. ..++++..|..+ +.--|+.+|.--+--...| -||+-
T Consensus 367 K~h~d~Ii~sLkterDvSirrravDLLY~mcD~~--------Nak~IV~elLqY-L~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 367 KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQY-LETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhcC
Confidence 777888888999 888999999986554332211 234445545443 4448888887433332333 48888
Q ss_pred ccccc
Q 000696 1324 SHSWR 1328 (1349)
Q Consensus 1324 ~~~~~ 1328 (1349)
..+|-
T Consensus 438 Dy~Wy 442 (938)
T KOG1077|consen 438 DYSWY 442 (938)
T ss_pred Ccchh
Confidence 88884
No 151
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.59 E-value=3.3e+02 Score=36.24 Aligned_cols=341 Identities=15% Similarity=0.201 Sum_probs=158.9
Q ss_pred CCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccch----HHHHHHHHHhhhcCCChhcHHHHHHHHHHhh
Q 000696 982 QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR----EAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1057 (1349)
Q Consensus 982 W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R----i~a~af~sELl~~~~~~~~l~~~~i~~L~~~ 1057 (1349)
|...|+-.-+...+|-.+.....+++++.++.....--|....+= ..-++.+++.+.. ....+...+..|.++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e---~P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE---HPMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc---CCcccCchHHHHHHH
Confidence 444455555555555555555555555555544333222221111 1111223333321 112233445566666
Q ss_pred cCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCC--hhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000696 1058 VSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1132 (1349)
Q Consensus 1058 l~D~~~~VR~lslrGLgnl~~---~~v~~~~~~lL~all~~L~d~d--~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~ 1132 (1349)
+..+...+... -+|..+.. .+...|....+.++-+.+-..+ ..+.+..|.++|.++.++..+..-..+..|..
T Consensus 558 Lh~sk~s~q~i--~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSKESEQAI--STLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCchHHHHHH--HHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 65443333222 22333322 2556677777777777665533 45788888888888887763322222222211
Q ss_pred ----hhcCc----CC------------------------------C-------------CChHHHHHHHHHHHHhhcc--
Q 000696 1133 ----RLRNL----QV------------------------------S-------------MNVKMRRNAFAAFGALSNF-- 1159 (1349)
Q Consensus 1133 ----~lrpf----fe------------------------------d-------------e~~~vR~aAi~LfG~L~~~-- 1159 (1349)
++.+. .+ . .--.||.-+|-.|-++...
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 11111 11 1 1123455556555555431
Q ss_pred ---------------CCCcchHHHHHHHHhhhhHHHHhccCCChhHH----H---HHHHHHHhhhhhhhhhhhhhhccc-
Q 000696 1160 ---------------GVGSQREAFLEQIHAMLPRLILHIYDDDLSVR----Q---ACRNTLKQVAPFMEIGVYGIFNSH- 1216 (1349)
Q Consensus 1160 ---------------~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~----~---ack~tL~~~a~lL~~~l~~lf~~~- 1216 (1349)
+.....++|-+.....+.+.+......+..|. . -|+++-..|.++.+-.....|++-
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl 795 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSL 795 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 11122233434444444444444333333332 1 233444445555554333333321
Q ss_pred -cCCCCC---CCC-hHHHHHHHHHHHHHhCcchHH--------HHHHHHHHhhcCCChhHHHHHHHHHHhhhccCch---
Q 000696 1217 -CFNSDH---RSD-YETFVRDLTRQFVQHFPSRID--------SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD--- 1280 (1349)
Q Consensus 1217 -~~~~~~---~l~-~~~f~~~l~k~L~~~~~~~~~--------~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~--- 1280 (1349)
.++++- ..+ |.+|+. +.+...+..|+-.. .++..++..++||-+..=+||+.|+-.++.....
T Consensus 796 ~lf~~~~f~n~~Di~~~~~~-~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~ 874 (982)
T KOG2022|consen 796 LLFEQHPFSNQPDIYLQLIG-FVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDL 874 (982)
T ss_pred HHHhccCCCCCchHHHHHHH-HHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh
Confidence 111111 111 344544 44444555554332 2344888999999988555666666555443322
Q ss_pred ----hhhhhccHHHHHHHHHHHhccC-CChhHHHHHHHHHHHHHH-hcccccccc
Q 000696 1281 ----QHILSLFYTQVFGLLVVKLSQS-ADAIVRATCSSSLGWLLK-SINSHSWRS 1329 (1349)
Q Consensus 1281 ----~~~~~~~~e~l~~~L~~~Ll~D-pdp~VR~~Aa~aL~~l~k-~~~~~~~~~ 1329 (1349)
+...+++...+++.+.. +-.- +-|.|-+.|-.=+.+..| ++-...|..
T Consensus 875 ~tv~~~V~~~G~~Li~~im~~-vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~ 928 (982)
T KOG2022|consen 875 VTVTSVVAEIGPILIYAIMRG-VGGEASRSTLDALADILLALNAKFFSETRTWLK 928 (982)
T ss_pred HHHHHHHHhcchHHHHHHHHH-hcCcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22334555566777766 4443 466676666655444443 344455655
No 152
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.84 E-value=45 Score=39.76 Aligned_cols=186 Identities=18% Similarity=0.108 Sum_probs=103.2
Q ss_pred hHHHHHHHHhhhhcc-cCccchHHHH-HHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc----h
Q 000696 1006 EVQTICLILTKSINR-QQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I 1079 (1349)
Q Consensus 1006 ~~~~i~~~L~~~L~s-~~~~~Ri~a~-af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~----~ 1079 (1349)
.-..|+..+.|++.. .+|.-....+ +|+..+..- ...+.+.+++.+.++++|..+.||+.-++.+|.... .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 567899999999887 3344344444 333333322 345568889999999999999999999999998753 3
Q ss_pred hhhhhHHHHHHHHHhhccCCC----hh----HHHHHHHHHHHHhccCCcCC---------------cchhHHhHHhhhcC
Q 000696 1080 HIHQYATQVLSVILALLDDLD----ES----VQLTAVSCLLTILKSSSKDA---------------VEPILLNLSVRLRN 1136 (1349)
Q Consensus 1080 ~v~~~~~~lL~all~~L~d~d----~~----V~leAm~~L~~lL~~l~~~~---------------~~~~l~~i~~~lrp 1136 (1349)
....+...+++.++..+++.. .. ....|.-.+. +....... -.+++++- .
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-----k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA--LSSWKLDKIDSKNISFWSLALDPKPSFLLSE-----K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH--hccccchhhhhhhhhhhhhccCCCcchhcCH-----H
Confidence 444555566666666665421 11 1223333333 11000000 01111111 1
Q ss_pred cCCC-CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhh
Q 000696 1137 LQVS-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1202 (1349)
Q Consensus 1137 ffed-e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1202 (1349)
++.+ -.++--...++++-.+..............+..+.++-++.|-+ ..+.||+.|..++.++.
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~-~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN-VSWKVRRAALSALKKLY 234 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 1222 22222233344443443321111222226778899999888732 26789999999998755
No 153
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.46 E-value=28 Score=44.57 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=107.4
Q ss_pred HHHHHHHHhhhhcccCccchHHHHHHHHHh---hhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhh
Q 000696 1007 VQTICLILTKSINRQQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIH 1082 (1349)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~~Ri~a~af~sEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~ 1082 (1349)
.+.|+-.+.|.++-++. +=+.+|+-|- |..-...+.+.+.++..|...++|++..++..+|++++.++.. ++.
T Consensus 347 ~~~~~p~l~pi~~~~~~---~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDP---KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhhHHHHHHhccCCc---ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 34444445555554222 2233455553 3333334677788999999999999999999999999998864 443
Q ss_pred hhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC
Q 000696 1083 QYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1083 ~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1161 (1349)
--.+.+++.+...... .+-.|...++-+++.+++.++...+-..++.+...++ -.++.+=..=..+|-.+.-.-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~----~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIK----TRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhhcc
Confidence 3446677777665333 2345888899999999988876655555444433322 2234555555666766664211
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000696 1162 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1195 (1349)
Q Consensus 1162 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1195 (1349)
+. ++.+-+||.-.++||. .-+.-.+.+=|+
T Consensus 500 ~g-~ev~~~~VlPlli~ls---~~~~L~~~Qy~~ 529 (700)
T KOG2137|consen 500 SG-VEVMAENVLPLLIPLS---VAPSLNGEQYNK 529 (700)
T ss_pred cc-eeeehhhhhhhhhhhh---hcccccHHHHHH
Confidence 11 4566666655555543 334444554443
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=71.42 E-value=9.4 Score=41.42 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=52.9
Q ss_pred HHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcc-hhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhcc
Q 000696 1090 SVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1090 ~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~-~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1159 (1349)
.+++..|... +..+....+++|+-++..-.-..+. .++..+...++|+..+-+.+||.+|...+|.|...
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3444555543 4567778889999888765544433 56677788889999999999999999999999873
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.28 E-value=23 Score=38.41 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1086 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1086 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
...|+-+.+||.+.+++-..-|..+..+++..-+...+-+++.++..-||.-++..+++|..++..+.-.|+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999956667889999999999999999999999999999999965
No 156
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=70.76 E-value=46 Score=39.21 Aligned_cols=168 Identities=12% Similarity=0.056 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh
Q 000696 1103 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1182 (1349)
Q Consensus 1103 V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1182 (1349)
|=..|+.+-..|+..++...+..-+-=.+.-|.|||..-+-.||-.-+.+|-+-.= +....++-.+...+..|+-=
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l----pL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL----PLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc----CccHHHHHHHHHHHHHhccc
Confidence 77788888888888888776554444445667899999999999999999988442 12236777777888888888
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000696 1183 IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1262 (1349)
Q Consensus 1183 L~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1262 (1349)
|.|++.++-..+-..+..+... .++ +.|+..+|.+++. .+.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~-------------v~~------~~F~~~lwl~ii~--------------------sp~ 187 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEA-------------VGD------KYFWQCLWLCIIT--------------------SPS 187 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHh-------------cCh------hHHHHHHHHHHhc--------------------Ccc
Confidence 9999999888776655554322 111 2577777777764 345
Q ss_pred HHHHHHHHHHhhhccCc----------hhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000696 1263 IQANAIYFSSSILCLCD----------DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1314 (1349)
Q Consensus 1263 IR~~A~~fiG~l~~~~~----------~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1314 (1349)
+|..|-.|+-....... .+..-..+.+.+++++.. .++|++..|++.+-.-
T Consensus 188 ~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~-~L~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 188 RRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCA-CLEDENILVQRGFLDL 248 (307)
T ss_pred hhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHH-HhCCchHHHHHHHHHH
Confidence 56666655553322211 111222456779999999 7999999999965443
No 157
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.19 E-value=8.9 Score=44.30 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCChhHHHHHH-HHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1249 MGSTIQAFEAPWPIIQANAI-YFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1249 l~~~l~ylkS~~~~IR~~A~-~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+...+.|++|+++++|.+|+ ..+|+.+. +.+-. .-+.+..++++.. |.+|++| -.-|++||..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~-~~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSL-SKYSEALLKDLTQ-LLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhh-ccchhhhHHHHHH-HccCccc--ccHHHHHHHHHH
Confidence 45568899999999999998 44566555 22222 2345778888888 8999999 455666666554
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.83 E-value=3.6e+02 Score=35.51 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccH
Q 000696 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS 861 (1349)
Q Consensus 782 V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~ 861 (1349)
++|.++.++.+..+.|-..-|+.+.+++-.+++.+..+|.-.-| =|+-..-+.=..|+...
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gm-------------------k~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGM-------------------KPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHccc-------------------HHHHHHHhhccCCHHHH
Confidence 88999999999999999999999999999999999887662211 12222333335678888
Q ss_pred HHHHHHHHHHHccCC
Q 000696 862 FLFLEHLISALNQTP 876 (1349)
Q Consensus 862 ~~vL~~LL~~L~~~p 876 (1349)
.-+|+.++-.....-
T Consensus 81 k~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD 95 (970)
T ss_pred HHHHHHHHHHHhcCc
Confidence 899999988877663
No 159
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=69.23 E-value=15 Score=36.30 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=69.0
Q ss_pred HHHHHHhhccCCC--h--hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1088 VLSVILALLDDLD--E--SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1088 lL~all~~L~d~d--~--~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
++.-+-+-+.|.+ . .-...++.+++.++.. ....+.+++.+|+--|+.-++. +++|..|++....+.+.-+..
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHH
Confidence 3444444444433 2 2477888899988885 4578999999999999999974 579999999999999977777
Q ss_pred chHHHHHHHHhhhhHH
Q 000696 1164 QREAFLEQIHAMLPRL 1179 (1349)
Q Consensus 1164 ~~~~~~eQv~~~LvpL 1179 (1349)
+-.++.+|+...++|.
T Consensus 89 ~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 89 ELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888889888887774
No 160
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.04 E-value=6.1 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1290 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1290 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
..+..|.. |++++++.||..|+.||+.|-
T Consensus 12 g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 36778999 899999999999999999874
No 161
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=68.63 E-value=1.4e+02 Score=36.21 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHH-HHHhhccCC--ChhHHHHHHHHHHHHhccCCcCCc
Q 000696 1049 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS-VILALLDDL--DESVQLTAVSCLLTILKSSSKDAV 1123 (1349)
Q Consensus 1049 ~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~~~~~~lL~-all~~L~d~--d~~V~leAm~~L~~lL~~l~~~~~ 1123 (1349)
..+..+...+-++++.||..++|-+--+... -+....+.=++ -+.-+|+-. .+-=+.+|+.-.+++++.- ++.
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~--~~~ 102 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK--KGP 102 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc--CCc
Confidence 3344444344455599999999977644322 11111110011 122333332 2345667888888888763 234
Q ss_pred chhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHh
Q 000696 1124 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1200 (1349)
Q Consensus 1124 ~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1200 (1349)
..+...++..|-..-|++++.+|..|++.+.+++-.... +.- -.+++-+|+--+.|...+++..+-.++..
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~-----lv~-~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE-----LVA-ECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH-----HHH-HcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 445566777777778889999999999999998851100 000 01344555556667666666666555554
No 162
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=68.55 E-value=27 Score=40.74 Aligned_cols=212 Identities=18% Similarity=0.160 Sum_probs=112.6
Q ss_pred HHHHhhhccCCcch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcCcC
Q 000696 1066 RGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQ 1138 (1349)
Q Consensus 1066 R~lslrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--i~~~lrpff 1138 (1349)
.--|.=+|.|++++ |+--. ...+|-++..|.+.+.+|.-.|+.+|++|-... .+.+.+.++ ....+..+|
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~~galeplL~ll 208 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQCGALEPLLGLL 208 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHhcCchHHHHHHH
Confidence 33455567788765 32111 234677888899889999999999999997643 222222211 011111223
Q ss_pred CCCCh---HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 000696 1139 VSMNV---KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNS 1215 (1349)
Q Consensus 1139 ede~~---~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~ 1215 (1349)
..... -+|- |-=.+..|++ |+...+=-.-+.++++-|---+.-.+++|.--+-.|+.-+.---.-++.++
T Consensus 209 ~ss~~~ismlRn-~TWtLSNlcR---GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av--- 281 (526)
T COG5064 209 LSSAIHISMLRN-ATWTLSNLCR---GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV--- 281 (526)
T ss_pred HhccchHHHHHH-hHHHHHHhhC---CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH---
Confidence 33222 2343 3344566655 555444334444555544433344455554433333332211000011111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHH
Q 000696 1216 HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLL 1295 (1349)
Q Consensus 1216 ~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L 1295 (1349)
+-.-.|.+ .+..+.+|...|..-|..-+|.++--.+.|-.--++ -...++|
T Consensus 282 ---------------------ld~g~~~R-------LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~ 332 (526)
T COG5064 282 ---------------------LDVGIPGR-------LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAF 332 (526)
T ss_pred ---------------------HhcCCcHH-------HHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHH
Confidence 11222333 234555577778778888899887766544322222 2256778
Q ss_pred HHHhccCCChhHHHHHHHHHHH
Q 000696 1296 VVKLSQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1296 ~~~Ll~Dpdp~VR~~Aa~aL~~ 1317 (1349)
.. |+..|-..+|+-|.=|++.
T Consensus 333 ~~-lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 333 RS-LLSSPKENIRKEACWTISN 353 (526)
T ss_pred HH-HhcChhhhhhhhhheeecc
Confidence 88 7888888999877655543
No 163
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=66.45 E-value=1.9e+02 Score=34.62 Aligned_cols=174 Identities=9% Similarity=0.174 Sum_probs=101.5
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhh---hhHHHHhccCCChhHHHHHHHHHHhhhhhh-------hh-
Q 000696 1139 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM---LPRLILHIYDDDLSVRQACRNTLKQVAPFM-------EI- 1207 (1349)
Q Consensus 1139 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~---LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-------~~- 1207 (1349)
..=.-+.|..+..+|+.+.+...+....+..+.+.+. ++..|+.--+ +|+++--|..-|+.|...= ..
T Consensus 86 ~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 86 PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 3345679999999999999865444332455555544 3333333333 7789999999999998541 11
Q ss_pred hhhhhhccccCCCCCCCChHHHHH--HHHHHHHHhCcc--------hHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhcc
Q 000696 1208 GVYGIFNSHCFNSDHRSDYETFVR--DLTRQFVQHFPS--------RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1277 (1349)
Q Consensus 1208 ~l~~lf~~~~~~~~~~l~~~~f~~--~l~k~L~~~~~~--------~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~ 1277 (1349)
....+|+- - +..+|+..-. .+.+.+...++. .+++|...-...+.|+.--.|+-|..++|-++-.
T Consensus 165 ~f~~ff~~---~--~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 165 CFWKFFKY---V--QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp GGGGHHHH---T--TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH---h--cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 11222221 1 1223322111 223344444444 3455555556678999999999999999977654
Q ss_pred Cchhh--hhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1278 CDDQH--ILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1278 ~~~~~--~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
-..-. ...++...-...+.. |++|+...||--|=--+..+.
T Consensus 240 r~n~~vm~~yi~~~~nLkl~M~-lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 240 RSNFNVMTRYISSPENLKLMMN-LLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp GGGHHHHHHHTT-HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCHHHHHHHHH-HhcCcchhhhHHHHHHHHHHH
Confidence 44222 344666666777777 899999999998876665554
No 164
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.44 E-value=24 Score=37.61 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1242 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1242 ~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
...++.+......+++|+.+.-|..++.+++-++...+.+-..+-+..++- .|...|.++..+.+...|-.+|..++.+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~-~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLR-ALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456667777888899999999999999999999998765554334444444 4555367777778899999999999966
Q ss_pred cccc
Q 000696 1322 INSH 1325 (1349)
Q Consensus 1322 ~~~~ 1325 (1349)
....
T Consensus 99 ~~~~ 102 (165)
T PF08167_consen 99 IRGK 102 (165)
T ss_pred hcCC
Confidence 5443
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=66.35 E-value=12 Score=45.32 Aligned_cols=119 Identities=20% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC------
Q 000696 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA------ 1122 (1349)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~------ 1122 (1349)
++..--.+.|..||..|+|++|-...| ....+....-++++..+.|+.=.++..|..++++|-..+-...
T Consensus 395 Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~ 474 (728)
T KOG4535|consen 395 FLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF 474 (728)
T ss_pred HHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH
Confidence 343333446888999999999977654 4456677778889999998878899999999999965443221
Q ss_pred ---cchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000696 1123 ---VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1171 (1349)
Q Consensus 1123 ---~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1171 (1349)
++..++.=..+.-..=+-.++.||..|++.+|.+..+...-.+-.+.+-
T Consensus 475 ~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~ 526 (728)
T KOG4535|consen 475 QERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI 526 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH
Confidence 1122222233334455668899999999999999986433333334333
No 166
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=13 Score=43.87 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=51.3
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1251 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1251 ~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
-.+.|++++...+|..|++.||-..++-|.-+..-+...-+-.-+.. |.+|.+-.||.+|--|++-+-
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~-ls~~~~~~~r~kaL~AissLI 195 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI-LSSDDPNTVRTKALFAISSLI 195 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH-HccCCCchHHHHHHHHHHHHH
Confidence 34569999999999999999999999999655333333323333344 678999999999988888766
No 167
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=64.14 E-value=20 Score=46.89 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=76.6
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000696 1062 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1138 (1349)
Q Consensus 1062 ~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1138 (1349)
+...| .|+.-|.|++.. +.+.....+++.++..|+..+..+..-++..|.++--.-+.+. .-.-..+..+|..+|
T Consensus 263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~-~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD-EMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHcCCHHHHHHHh
Confidence 44445 445666777654 2223346677888888888788888888888888754322221 112234556667788
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh--hhhHHHHhccCCC
Q 000696 1139 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA--MLPRLILHIYDDD 1187 (1349)
Q Consensus 1139 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~--~LvpLLlHL~D~~ 1187 (1349)
..++.+++..|..++.+|+- ....+.++.+ .+++|+--|.|++
T Consensus 341 ~s~~~~l~~~aLrlL~NLSf------d~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSF------DPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 99999999999999999986 2234566553 5556666666654
No 168
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.69 E-value=18 Score=45.93 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhhcccCccchHHHHHHHHHhhhc-----CC-ChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000696 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1079 (1349)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~-----~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~- 1079 (1349)
+.+=++++..+|++++...|.+|+-=....... |. .-..++..++ -.-..|++..||.....||-.|+..
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~---d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKIT---DELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH---HHhhhccchheehhHhcCcHHHHcCc
Confidence 445567777888888888888887543332221 11 1112223333 3345889999999999999988654
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000696 1080 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1349)
Q Consensus 1080 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1115 (1349)
.-+...+++|+|+-..|.|..+.|++.+...|.+|=
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 334456889999999999999999999999998873
No 169
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=63.53 E-value=65 Score=40.71 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=79.3
Q ss_pred HHHhccCCcCCcchhHHhHHhhhcCcCC--------CCChHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHhhhhHHHH
Q 000696 1112 LTILKSSSKDAVEPILLNLSVRLRNLQV--------SMNVKMRRNAFAAFGALSNFGVGSQ--REAFLEQIHAMLPRLIL 1181 (1349)
Q Consensus 1112 ~~lL~~l~~~~~~~~l~~i~~~lrpffe--------de~~~vR~aAi~LfG~L~~~~~~~~--~~~~~eQv~~~LvpLLl 1181 (1349)
..++...+...+..+-..|--+++|..+ .+..+.|..|-+.+|.|++.....- .-.+.+.++.
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~------- 421 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFD------- 421 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHH-------
Confidence 4444444444444444445555556663 4678999999999999998433321 1223333333
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000696 1182 HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1260 (1349)
Q Consensus 1182 HL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1260 (1349)
.|.++.++|+.+-..||...++.+.+ .- . + +.-.......+. ..|..+..
T Consensus 422 sL~~~~~evr~sIqeALssl~~af~~~~~-----~----~------~~~~~~~~~~l~--------------~~~~~~~~ 472 (501)
T PF13001_consen 422 SLEDESPEVRVSIQEALSSLAPAFKDLPD-----D----E------DEQKRLLLELLL--------------LSYIQSEV 472 (501)
T ss_pred HhhCcchHHHHHHHHHHHHHHHHHhcccc-----c----h------hHHHHHHHHHHH--------------Hhhccchh
Confidence 33899999999999999998887665 21 0 0 001111112222 22444677
Q ss_pred hhHHHHHHHHHHhhhccCc
Q 000696 1261 PIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1261 ~~IR~~A~~fiG~l~~~~~ 1279 (1349)
...|-+|+.|+....-..+
T Consensus 473 ~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 473 RSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 7889999999886655443
No 170
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=63.35 E-value=1.7e+02 Score=40.78 Aligned_cols=212 Identities=16% Similarity=0.150 Sum_probs=125.5
Q ss_pred HHH-HHHHHHHHHHhcCCcchHHHHHH-----hhHHHHHHHHHHhhh-ccc-CCCCC-------------------C---
Q 000696 900 ILQ-AAILALTAFFRGGGKVGKKAVEK-----SYAPVLAALTLQLGS-CHG-LASSG-------------------Q--- 949 (1349)
Q Consensus 900 ~~l-aA~~aL~Ell~~~~~~~~~av~~-----~fp~Lf~aLL~ql~~-~~~-~~~~~-------------------~--- 949 (1349)
-++ ||+|+|--+=+.. |+|.++.+ ..|+ |+|+-| .+| ....+ .
T Consensus 313 H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIae-----Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N 385 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAE-----LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN 385 (2195)
T ss_pred hhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHH-----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc
Confidence 356 9999999888877 89988754 3444 344444 444 21111 0
Q ss_pred ---CChHHHHHHHHHHHHHhh--cchHHHHHHHhcCCCC----ChhhHHHH--HHHHHHHhhhcCc-hhHHHHHHHHhhh
Q 000696 950 ---HEPLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINL--IGDVAGCVSIKRP-KEVQTICLILTKS 1017 (1349)
Q Consensus 950 ---~~P~~~aleAlk~ll~~~--g~~~~~~~L~~~g~W~----~~e~~~~g--V~lLAr~m~~~~~-~~~~~i~~~L~~~ 1017 (1349)
+--.+-+++|+=+-|... ...+|.+-+-++=.|. ..+.+.+. |+.||.|-.+.+- .-++.|+..|+.+
T Consensus 386 Ka~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 386 KATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred hhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 111123444443333332 2334445555566797 33333333 5567776555543 6799999999988
Q ss_pred hcccCccchHH-----HHHHHHHhhhcC--CC-------------------------hhcHHHH-HHHHHHhhcCCCChh
Q 000696 1018 INRQQRFQREA-----AAAALSEFVRYS--GG-------------------------FDSLLEQ-MVEALCRHVSDESPT 1064 (1349)
Q Consensus 1018 L~s~~~~~Ri~-----a~af~sELl~~~--~~-------------------------~~~l~~~-~i~~L~~~l~D~~~~ 1064 (1349)
--...+..+-+ |.+|++-+|.+- .. .+.+.+. ++..|++.|+..+-+
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT 545 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT 545 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence 33333333322 568888877642 00 1223322 777888888888888
Q ss_pred HHHHHhhhccCCcch--hhhhhH--HHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000696 1065 VRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1349)
Q Consensus 1065 VR~lslrGLgnl~~~--~v~~~~--~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1118 (1349)
|-.=++-.|.|+.-. +..++. ...++-+.+.+..++.-|++.+..+|.++|+.=
T Consensus 546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 888888888888633 211111 122344555556667889999999999999864
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.15 E-value=41 Score=45.56 Aligned_cols=111 Identities=21% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000696 1049 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1128 (1349)
Q Consensus 1049 ~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1128 (1349)
+....+......+.+.||-.+.|.+|.+...--..-...+++.++..+++.+.-+.-++...+-.++..+...++.++..
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 44567777889999999999999999886542222235667888888887766666666655556666666677777777
Q ss_pred hHHhhhcCcCCCCChHHHHHHHHHHHHhhcc
Q 000696 1129 NLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1129 ~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1159 (1349)
=++.-|.+...|..+.||.+|-..|..+...
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 7777788899999999999999999999873
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=59.81 E-value=20 Score=36.18 Aligned_cols=79 Identities=13% Similarity=-0.023 Sum_probs=51.7
Q ss_pred hCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000696 1240 HFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1240 ~~~~~~~~~l~~~l~yl-kS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
++.+.=...+...+.++ +|..+..-+-|+.=||.+++++|. -+.-+..-.....+.. |..+|||.||.-|-.|+..+
T Consensus 36 kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 36 KFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 33444445566666777 444566777788889999999973 2222222224445566 78899999999999998877
Q ss_pred HH
Q 000696 1319 LK 1320 (1349)
Q Consensus 1319 ~k 1320 (1349)
.-
T Consensus 114 m~ 115 (119)
T PF11698_consen 114 MV 115 (119)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 173
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=59.24 E-value=2.1e+02 Score=34.99 Aligned_cols=207 Identities=15% Similarity=0.129 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHH
Q 000696 1102 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1181 (1349)
Q Consensus 1102 ~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl 1181 (1349)
.|++||-..|-.++..-..+.+..+-+.+...+- =+.|-.+.-.+...+.|++-+.... ...+=-.-..+-..++
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA--K~~e~~e~aR~~~~il~~mFKHSee---t~~~Lvaa~~lD~vl~ 271 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARIGLGVILNLA--KEREPVELARSVAGILEHMFKHSEE---TCQRLVAAGGLDAVLY 271 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh--hhcCcHHHHHHHHHHHHHHhhhhHH---HHHHHHhhcccchhee
Confidence 3666666666666544332222222222211111 2455567777788888888773221 1111112245667788
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhcccc--------CCCCC------------------------------
Q 000696 1182 HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--------FNSDH------------------------------ 1222 (1349)
Q Consensus 1182 HL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~--------~~~~~------------------------------ 1222 (1349)
...-.+|++-.-|..||..|+-.=+- .-+.+.++.+ +.-|+
T Consensus 272 ~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 272 WCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred ecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchh
Confidence 88888999999999999999844332 1122222221 00000
Q ss_pred -------CCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHH--hhhccCchhhhhhccHH-HHH
Q 000696 1223 -------RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS--SILCLCDDQHILSLFYT-QVF 1292 (1349)
Q Consensus 1223 -------~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG--~l~~~~~~~~~~~~~~e-~l~ 1292 (1349)
.++-+.|.+|-.+ .-+++-...+.-.++.++|..-.-|+-++.+.- ..++... -...+-.| ..+
T Consensus 352 LVEPlva~~DP~~FARD~hd----~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q--~K~kVFseIGAI 425 (832)
T KOG3678|consen 352 LVEPLVASLDPGRFARDAHD----YAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQ--GKTKVFSEIGAI 425 (832)
T ss_pred hhhhhhhccCcchhhhhhhh----hhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhc--cchhHHHHHHHH
Confidence 0011222222211 123333455666778888877766665543322 1122111 10011111 145
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000696 1293 GLLVVKLSQSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1293 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1320 (1349)
.+|.+ +-..||..-..+|.+||-.+++
T Consensus 426 QaLKe-vaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 426 QALKE-VASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHH-HhcCchHHHHHHHHHHHHHhcc
Confidence 56777 6779999999999999999883
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.83 E-value=41 Score=39.21 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=96.7
Q ss_pred CCCCChhhHHHHHHHHHHHhhhcCchhHHH----HHHHHhhhhcccCccchHHHHHHHHHhhhcCCCh-hcHHHHHHHHH
Q 000696 980 GEQNDKEKWINLIGDVAGCVSIKRPKEVQT----ICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEAL 1054 (1349)
Q Consensus 980 g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~----i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L 1054 (1349)
=.|++-+...+|+- ..|.++.+++..+.. ++-.+...++++....--+|+..++++..+-... ...++.++..|
T Consensus 97 L~s~dW~~~vdgLn-~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSDDWEDKVDGLN-SIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchHHHHHHhhhHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777 445667777654333 3334444444444444455555555544332110 00112222222
Q ss_pred HhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh
Q 000696 1055 CRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1134 (1349)
Q Consensus 1055 ~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~l 1134 (1349)
.-...+.| .-|+-+|-.+|.........+.+ ...|
T Consensus 176 l~ka~~dn--------------------------------------rFvreda~kAL~aMV~~vtp~~~-------L~~L 210 (334)
T KOG2933|consen 176 LHKASQDN--------------------------------------RFVREDAEKALVAMVNHVTPQKL-------LRKL 210 (334)
T ss_pred Hhhhcccc--------------------------------------hHHHHHHHHHHHHHHhccChHHH-------HHHH
Confidence 22222222 33556666666666665544322 2233
Q ss_pred cCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhH-HHHhccCCChhHHHHHHHHHHhhhhhhhh
Q 000696 1135 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR-LILHIYDDDLSVRQACRNTLKQVAPFMEI 1207 (1349)
Q Consensus 1135 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp-LLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1207 (1349)
.|+.-+.++.+|+.|...|-....-. ...+..+|...-+++ +=-|+.|.=|.+++++++.+......++|
T Consensus 211 ~~~~~~~n~r~r~~a~~~~~~~v~rl---~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 211 IPILQHSNPRVRAKAALCFSRCVIRL---GVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKT 281 (334)
T ss_pred HHHHhhhchhhhhhhhccccccceec---cccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHH
Confidence 45566667778877766665544311 133444444422333 34678898899999999999988888887
No 175
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=57.05 E-value=34 Score=37.15 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc--C
Q 000696 1048 EQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK--D 1121 (1349)
Q Consensus 1048 ~~~i~~L~~~l~D~~~~VR~lslrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~--~ 1121 (1349)
+..+-.+.+++.....=.|-+|.+|.-.+. ..++-...++++..+-.+|...|.+|...++.+|..++...+. .
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 345556777777777777788888877662 3377778899999999999999999999999999999544321 3
Q ss_pred CcchhHHhHHhhhcCcC
Q 000696 1122 AVEPILLNLSVRLRNLQ 1138 (1349)
Q Consensus 1122 ~~~~~l~~i~~~lrpff 1138 (1349)
.+.|++-+|...+.-|.
T Consensus 117 aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFK 133 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666554444333
No 176
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=56.93 E-value=40 Score=36.46 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHH
Q 000696 1229 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1308 (1349)
Q Consensus 1229 f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1308 (1349)
....+|..+...++.....+ .....+.+|+..-+|++|..+....... ..+.+.++..+.. ++.|++..||
T Consensus 88 ~~D~~~~~~~~~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~-~~~d~~~~Vq 158 (197)
T cd06561 88 LVDSLCANLLGKLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIER-LLHDEEYFVQ 158 (197)
T ss_pred HHHHHHHHHHHHHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHH-hCCCHHHHHH
Confidence 44455666655554443333 5667799999999999987665543332 1345777888888 8999999999
Q ss_pred HHHHHHHHHHHHh
Q 000696 1309 ATCSSSLGWLLKS 1321 (1349)
Q Consensus 1309 ~~Aa~aL~~l~k~ 1321 (1349)
...+-+|..+++.
T Consensus 159 kav~w~L~~~~~~ 171 (197)
T cd06561 159 KAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888865
No 177
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=53 Score=39.55 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=92.6
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1127 (1349)
+.-|+..+++.|..||.=+++|+-.+-.. .+.-+.-.++.......-|.+..|+-.+...+-.++........+++.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 44677788999999999999999866432 444445677888888888888899999999999988887777789999
Q ss_pred HhHHhhhcCcCCCCChHHHHHHHHHHHHhhccC
Q 000696 1128 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1160 (1349)
Q Consensus 1128 ~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~ 1160 (1349)
.-+...++.-+.+--+++|..|+.-|.-|+.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 889999999999999999999999998888754
No 178
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.59 E-value=2.3e+02 Score=33.03 Aligned_cols=162 Identities=9% Similarity=0.084 Sum_probs=97.7
Q ss_pred cCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcc-----hHHHHHHHHhhhhHHHHhcc-----CC
Q 000696 1117 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----REAFLEQIHAMLPRLILHIY-----DD 1186 (1349)
Q Consensus 1117 ~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----~~~~~eQv~~~LvpLLlHL~-----D~ 1186 (1349)
.++...++....-+..-+-.+.||.+..+|.-+..++.++........ ...+-+.+..++.|.+.||- |+
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 556666665555566666678999999999999999999998554333 22233456688888888885 77
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHH
Q 000696 1187 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQA 1265 (1349)
Q Consensus 1187 ~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~yl-kS~~~~IR~ 1265 (1349)
...+-.++=-||..++....+ .. ...+...+++++++ .+.+ .+.+. +.+.+.++.
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~-------~~--~~~r~~~l~~~l~e---~IL~------------~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQEN-------DD--SNPRSTWLDKILRE---GILS------------SMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhcc-------CC--cccchHHHHHHHHH---HHhh------------hceeccccCchhHHH
Confidence 788888888888887664331 00 00011112222222 1111 11111 135677777
Q ss_pred HHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000696 1266 NAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1305 (1349)
Q Consensus 1266 ~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1305 (1349)
.....+..++..+.-.-. .....++..|-. ..+||+.
T Consensus 243 ~ll~~l~~~i~~lGi~~~--~hL~rii~~l~~-~l~npf~ 279 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSV--KHLQRIIPVLSQ-ILENPFG 279 (282)
T ss_pred HHHHHHHHHHHHhccHHH--HHHHHHHHHHHH-HhcCCCc
Confidence 777777766666653222 123556666666 5777753
No 179
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=53.32 E-value=3.3e+02 Score=39.70 Aligned_cols=161 Identities=13% Similarity=0.073 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHhhhcCCCh-hcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---h----hhHHHHHHHHHhh
Q 000696 1024 FQREAAAAALSEFVRYSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H----QYATQVLSVILAL 1095 (1349)
Q Consensus 1024 ~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v---~----~~~~~lL~all~~ 1095 (1349)
..|-..+-.+.+++...... ..=.+.++..|.....|+++.+-.+|.+.+..|..+.. . .-...++.|+.+.
T Consensus 1198 eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~F 1277 (1780)
T PLN03076 1198 EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAF 1277 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Confidence 34444455555555543210 11125677788877788888777777776665433211 1 1223444444433
Q ss_pred ccCC-ChhHHHHHHHHHHHHhccCCcC-----------------------------------CcchhHHhHHhhhcCcCC
Q 000696 1096 LDDL-DESVQLTAVSCLLTILKSSSKD-----------------------------------AVEPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1096 L~d~-d~~V~leAm~~L~~lL~~l~~~-----------------------------------~~~~~l~~i~~~lrpffe 1139 (1349)
-... +.++-+.|+..|..+...+-.. +...+-+-+...+...-.
T Consensus 1278 a~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~ 1357 (1780)
T PLN03076 1278 TNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF 1357 (1780)
T ss_pred HhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 3222 3568888888888663333110 011234444555555556
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh-hhhHHHHhcc
Q 000696 1140 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA-MLPRLILHIY 1184 (1349)
Q Consensus 1140 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~-~LvpLLlHL~ 1184 (1349)
|+|.+||..|+..|=++...-++.....+=+.+++ .|.|++-+++
T Consensus 1358 D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1358 DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999765554443333445556666665 6788876654
No 180
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.67 E-value=16 Score=29.79 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000696 1287 FYTQVFGLLVVKLSQSADAIVRATCSSS 1314 (1349)
Q Consensus 1287 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1314 (1349)
+.+.+.+++.. -+.|++|.||..|-+.
T Consensus 15 ~~~~v~~~i~~-rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 15 DSSDVQSAIIR-RLSDSSPSVREAAVDL 41 (42)
T ss_pred chHHHHHHHHH-HhcCCChHHHHHHHHH
Confidence 45678888888 6999999999999775
No 181
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=51.38 E-value=2.8e+02 Score=35.20 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=93.1
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-h-hhhhhccccCC-----CCCCCChH-HHHHHHHHHHHHh-----
Q 000696 1174 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-VYGIFNSHCFN-----SDHRSDYE-TFVRDLTRQFVQH----- 1240 (1349)
Q Consensus 1174 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~-l~~lf~~~~~~-----~~~~l~~~-~f~~~l~k~L~~~----- 1240 (1349)
..++|++.=-.|++.+|+..+-..|.++..-++- . +..+|.-+ .+ +++..... ..-..|..+|.++
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly-~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~ 315 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLY-LGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT 315 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh
Confidence 4677888888999999999999999999988666 3 35555543 21 11111111 1222333444332
Q ss_pred CcchHHHHHHHHHHhhcCC--ChhHHHHHHHHH---HhhhccCchhhhhhccHHHHHHHHHHHhcc--------CCChhH
Q 000696 1241 FPSRIDSYMGSTIQAFEAP--WPIIQANAIYFS---SSILCLCDDQHILSLFYTQVFGLLVVKLSQ--------SADAIV 1307 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~ylkS~--~~~IR~~A~~fi---G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~--------Dpdp~V 1307 (1349)
.+..+...+.. =+.|+ ...+|..|..|+ +....+.+.+....+. +.+.+.+.. +.+ -.+...
T Consensus 316 ~~~~~~~i~~~---~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~-~~i~~~g~p-~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 316 SFPNILQIVFD---GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLR-PVILSQGWP-LIQDSSSQSNSSEDIEL 390 (501)
T ss_pred CCccHHHHHhc---cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHH-HHHHhcCcc-ccccccccCCCcccHHH
Confidence 22222222222 34455 778999999999 8888888877765443 445555555 332 257889
Q ss_pred HHHHHHHHHHHHHhcccc
Q 000696 1308 RATCSSSLGWLLKSINSH 1325 (1349)
Q Consensus 1308 R~~Aa~aL~~l~k~~~~~ 1325 (1349)
|..|=+|||.|.+.....
T Consensus 391 R~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSL 408 (501)
T ss_pred HHHHHHHHHHHHccCccc
Confidence 999999999999765443
No 182
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=51.25 E-value=11 Score=27.54 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.1
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccC
Q 000696 1065 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1098 (1349)
Q Consensus 1065 VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d 1098 (1349)
||.-+.++||+++. +..++.++..|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 79999999999997 5567777766653
No 183
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.86 E-value=52 Score=41.90 Aligned_cols=105 Identities=20% Similarity=0.148 Sum_probs=73.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHH----HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC
Q 000696 1051 VEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQ----VLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1121 (1349)
Q Consensus 1051 i~~L~~~l~D~~~~VR~lslrGLgnl~~~-----~v~~~~~~----lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~ 1121 (1349)
++.+.+-+..++-+.|.-.+...||+..+ ++..+.++ +++.+.+-|.|...-++..|++++.+|.+.-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 44556667888999999999999999754 23333344 4455556666666779999999999999875533
Q ss_pred Cc-chhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1122 AV-EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1122 ~~-~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
.- +.-+..++. | ...|-+..||..||.+|..|.-
T Consensus 381 ~~~r~ev~~lv~--r-~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVIRLVG--R-RLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHH--H-HhhhhhHHHHHHHHHHHHHHHh
Confidence 21 122333332 3 4567789999999999999984
No 184
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=48.80 E-value=1e+03 Score=35.11 Aligned_cols=323 Identities=12% Similarity=0.099 Sum_probs=158.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCC
Q 000696 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1349)
Q Consensus 430 kd~~~K~s~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~~L~P 509 (1349)
++..+-.-.+.++.+++.-+-...+ -..|.|. .++++=+..+|+.... .. +|.+++.++..++.-
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eE-L~~f~FQ--kefLkPfe~im~~s~~----~e------VrE~ILeCv~qmI~s-- 1213 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREE-LANYNFQ--NEFMKPFVIVMRKSNA----VE------IRELIIRCVSQMVLS-- 1213 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhh-hhchhHH--HHHHHHHHHHHHhcCc----hH------HHHHHHHHHHHHHHH--
Confidence 3445555566666677766554332 2345554 6888888888875431 12 899999999987732
Q ss_pred CCChhHHHHHHH----HhhhccccCCC--CcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHhhHHHhcChhHH
Q 000696 510 KLTIETRNHVMK----ATLGFFALPND--PIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEY 583 (1349)
Q Consensus 510 ~l~~e~~~~ll~----~c~~v~~lp~~--~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~ 583 (1349)
+..=++ +.|++|+.+.. ...+++..++.+..+....+..=+. ...+.+..++.=+..+.+...+
T Consensus 1214 ------~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---~~~~~F~DlV~cL~~Fa~q~~~- 1283 (1780)
T PLN03076 1214 ------RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---TETTTFTDCVNCLIAFTNSRFN- 1283 (1780)
T ss_pred ------HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---cchhHHHHHHHHHHHHHhCcCc-
Confidence 222222 33466665532 2246666677666555443321110 0146778888888888865544
Q ss_pred hhhHHHHHHHHHHH---HHHhhhhcccccCCCCCCccchh-hh--hhhhhccCCCCCCcccCCchh-hhhhhhHHHHhhc
Q 000696 584 QRRRSCLAVYEMLL---KFRTLCVIGYCALGCHGSCTHIK-QI--DRAVLGNFSNLPSAYVLPSRE-ALCLGNRVIMYLP 656 (1349)
Q Consensus 584 eR~RA~~~~~~lL~---~~~~~~~~~~c~~~~~~~~~~~~-~~--~~~~~~~~~~~ps~f~~~~~~-f~~lG~Lvg~l~p 656 (1349)
...++.++..++. ++.+..+ ++.....+.. .. ..+-+....+.+ .+ .+... ...-=.++..|.=
T Consensus 1284 -~nISL~AI~lL~~~~~~La~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~-~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1284 -KDISLNAIAFLRFCATKLAEGDL------GSSSRNKDKEAPPSSPQSGKDGKQESG-EF-TDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred -ccccHHHHHHHHHHHHHHHhccc------ccccccccccccccccccccccccccc-cc-ccchhHHHHHHHHHHHHHH
Confidence 5677777766663 2222100 0000000000 00 000000000000 00 00000 0111234444555
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-cchh---hhhhhhhhcHHHHHHhcc----------CCC-CChh
Q 000696 657 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSG-IDLE---LSYGALSSLEDVIAILRS----------DAS-IDPS 721 (1349)
Q Consensus 657 rC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~-~~~~---~~~~~l~~l~d~~~~l~~----------~~~-~~~~ 721 (1349)
.|.|+.++||..|++.+.-+| ..+.. .++.+ ++.- ....-+..++..++.... +.+ .+..
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL---~~yG~--~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 1429 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTL---RNHGH--LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQD 1429 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHH---HHhhc--cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhh
Confidence 688999999999877655444 22211 12211 1100 000001111100000000 000 0000
Q ss_pred ----HH----HHHHHHHHHccCC--hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHH
Q 000696 722 ----EV----FNRIVSSVCILLT--KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLS 791 (1349)
Q Consensus 722 ----~~----~~~i~~~i~~~L~--~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~ 791 (1349)
+- +..++.-|.+++. ...|.+|+.-+...++..+..-+.-++.-|..++...|.++.+++-..|++.+..
T Consensus 1430 ~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~ 1509 (1780)
T PLN03076 1430 AWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKE 1509 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 11 1234444555553 3356667776777777778888888888999999999999987756666655544
No 185
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=48.68 E-value=55 Score=43.15 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=82.7
Q ss_pred hcHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc--
Q 000696 1044 DSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS-- 1117 (1349)
Q Consensus 1044 ~~l~~~~i~~L~~~l-~D~~~~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~-- 1117 (1349)
..+.+..+-.|.+-+ .+.+..+|-=.+=++|.+-.+ .+.+|. |-+-..|.|.+.-|+-.++.-|+++|+.
T Consensus 963 ~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Yi----P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 963 DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYI----PMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhh----HHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 344454555555555 345566666555566666654 566674 4567788999999999999999999975
Q ss_pred CCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000696 1118 SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1188 (1349)
Q Consensus 1118 l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1188 (1349)
..|. +.+++.. ---.-|+++++|.-|=.+||++.+.. .+. .+ .+++|--++||+|-..
T Consensus 1039 vKw~--G~Lf~Rf----~l~l~D~~edIr~~a~f~~~~vL~~~-~P~-~f-----~~~FVe~i~~ln~~~~ 1096 (1529)
T KOG0413|consen 1039 VKWN--GELFIRF----MLALLDANEDIRNDAKFYISEVLQSE-EPN-FF-----PLNFVEYIIALNQARR 1096 (1529)
T ss_pred hhcc--hhhHHHH----HHHHcccCHHHHHHHHHHHHHHHhhc-Ccc-ch-----HHHHHHHHHHHHHHHH
Confidence 2233 2333332 22346899999999999999999832 111 11 2456666677766443
No 186
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.43 E-value=7.9e+02 Score=32.54 Aligned_cols=148 Identities=13% Similarity=0.180 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHHHhhhc----CchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcC
Q 000696 984 DKEKWINLIGDVAGCVSIK----RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS 1059 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~----~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~ 1059 (1349)
+.-.+.+-.+.+-.+.+=+ ++.....++.-++-+++-++.-.+..|+..|-. +.+.++
T Consensus 13 ~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~------------------~tKlfQ 74 (865)
T KOG1078|consen 13 NVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFA------------------ITKLFQ 74 (865)
T ss_pred ccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH------------------HHHHHh
Confidence 3344444444444444333 233455666666666666666665555543322 333345
Q ss_pred CCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC
Q 000696 1060 DESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1060 D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe 1139 (1349)
.-++..|+++=-|++.++.. ...+-.+...++.-....++.+..-|+++|-.|++.-.-.+++ .-+..+|-
T Consensus 75 skd~~LRr~vYl~Ikels~i--sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ie-------ry~kqaiv 145 (865)
T KOG1078|consen 75 SKDVSLRRMVYLAIKELSKI--SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIE-------RYMKQAIV 145 (865)
T ss_pred hcCHHHHHHHHHHHhhcccc--chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHH-------HHHHhHee
Confidence 55677788877777777642 1122345666666665566789999999999999754333333 33466899
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 000696 1140 SMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1140 de~~~vR~aAi~LfG~L~~ 1158 (1349)
|-++.++.+|.--=-+|..
T Consensus 146 d~~~avSsaalvss~hll~ 164 (865)
T KOG1078|consen 146 DKNPAVSSAALVSSYHLLP 164 (865)
T ss_pred ccccccchHHHHHHhhhhc
Confidence 9999999998754444443
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=48.18 E-value=25 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=26.0
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhh
Q 000696 1174 AMLPRLILHIYDDDLSVRQACRNTLKQVA 1202 (1349)
Q Consensus 1174 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1202 (1349)
+.+++|+-.|.+++++|++.|-.||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56888888999999999999999998875
No 188
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.95 E-value=3.9e+02 Score=37.71 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=123.1
Q ss_pred ChhhHHHHHHHHHHHhhhcCc--hhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcH-HHHHHHHHHhhcCC
Q 000696 984 DKEKWINLIGDVAGCVSIKRP--KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL-LEQMVEALCRHVSD 1060 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~--~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l-~~~~i~~L~~~l~D 1060 (1349)
+...-.+...+++..++.+++ .-+...+..++..|..+...-|..|+-.++.+..-... .+ .+.+-.....++.|
T Consensus 789 s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 789 SRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLND 866 (1692)
T ss_pred CccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhcc
Confidence 334444556667777776654 35678888888899988889999999999998763211 11 13355677889999
Q ss_pred CChhHHHHHhhhccCC--cch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000696 1061 ESPTVRGLCLRGLVQI--PSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1349)
Q Consensus 1061 ~~~~VR~lslrGLgnl--~~~-~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1137 (1349)
++..||..|+.=+|.- +.. -+.+| -+.+.++.-|+.-.|+-.++..|+++=..-+ ++ +..+.+|-++-.-
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~p--df-~~i~~~cakmlrR 939 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQY----YDQIIERILDTGVSVRKRVIKILRDICEETP--DF-SKIVDMCAKMLRR 939 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--Ch-hhHHHHHHHHHHH
Confidence 9999999999998843 222 33444 4556677777788899999999999986532 33 4567888888777
Q ss_pred CCCCChHHHHHHHHHHHHhh
Q 000696 1138 QVSMNVKMRRNAFAAFGALS 1157 (1349)
Q Consensus 1138 fede~~~vR~aAi~LfG~L~ 1157 (1349)
-+||.+.|...+...|-.++
T Consensus 940 v~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 940 VNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hccchhHHHHHHHHHHHHHh
Confidence 89999999999999999887
No 189
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=45.42 E-value=1.4e+02 Score=30.42 Aligned_cols=91 Identities=5% Similarity=0.025 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhc-cHHHHHHHHHHHhccCCCh---
Q 000696 1230 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADA--- 1305 (1349)
Q Consensus 1230 ~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~-~~e~l~~~L~~~Ll~Dpdp--- 1305 (1349)
+++|++.-.. .++.....+.-...-+++..++||.=|-..+-+++...+.+....+ ..-.++..+.. -..-|||
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~-f~g~~Dp~~G 99 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECAN-YKGPPDPLKG 99 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHH-cCCCCCcccC
Confidence 3455554333 5666777777777788888899999999999999998875554332 12235666666 4665555
Q ss_pred -----hHHHHHHHHHHHHHHhc
Q 000696 1306 -----IVRATCSSSLGWLLKSI 1322 (1349)
Q Consensus 1306 -----~VR~~Aa~aL~~l~k~~ 1322 (1349)
.||..|.+++..++.+.
T Consensus 100 d~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred cchhHHHHHHHHHHHHHHhccC
Confidence 89999999999998654
No 190
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=45.29 E-value=24 Score=28.71 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhh
Q 000696 1048 EQMVEALCRHVSDESPTVRGLCLRG 1072 (1349)
Q Consensus 1048 ~~~i~~L~~~l~D~~~~VR~lslrG 1072 (1349)
..+.+.+.+++.|++|.||..++.-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4578899999999999999998863
No 191
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=43.87 E-value=4.2e+02 Score=32.25 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHHHHHhcccc
Q 000696 1291 VFGLLVVKLSQS-ADAIVRATCSSSLGWLLKSINSH 1325 (1349)
Q Consensus 1291 l~~~L~~~Ll~D-pdp~VR~~Aa~aL~~l~k~~~~~ 1325 (1349)
++++|.. +-.+ +|+.++.+|+-=||.+.+-++..
T Consensus 335 L~~~L~~-li~~~~d~~l~~KAtlLL~elL~la~~l 369 (371)
T PF14664_consen 335 LLEALVE-LIESSEDSSLSRKATLLLGELLHLASRL 369 (371)
T ss_pred hHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHhc
Confidence 5667777 4554 59999999999999988877654
No 192
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=43.77 E-value=1.9e+02 Score=37.32 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=83.2
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CC----------CCChHHHHH
Q 000696 1080 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QV----------SMNVKMRRN 1148 (1349)
Q Consensus 1080 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fe----------de~~~vR~a 1148 (1349)
..+.|.+.+++-+.+.+.+.+..++.++..+++++..+++|....+++- ++.-.-+. |- +.|+-+-..
T Consensus 239 ~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~ 317 (993)
T COG5234 239 ESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHG 317 (993)
T ss_pred chhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHH
Confidence 4667778888888888888888999999999999999999988777654 55444333 11 244556667
Q ss_pred HHHHHHHhhccCCC-------------------------------------------cchHHHHHHHHhhhhHHHHh--c
Q 000696 1149 AFAAFGALSNFGVG-------------------------------------------SQREAFLEQIHAMLPRLILH--I 1183 (1349)
Q Consensus 1149 Ai~LfG~L~~~~~~-------------------------------------------~~~~~~~eQv~~~LvpLLlH--L 1183 (1349)
+|.-|| |++.+.- .....+-+++..+|.-|++. +
T Consensus 318 ~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 318 AILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 777776 4442100 01233445555666666665 6
Q ss_pred cCCChhHHHHHHHHHHhh
Q 000696 1184 YDDDLSVRQACRNTLKQV 1201 (1349)
Q Consensus 1184 ~D~~~~V~~ack~tL~~~ 1201 (1349)
-||+-.||.++..||...
T Consensus 397 FDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 397 FDPELNVRRAATAALFEV 414 (993)
T ss_pred cCchhhhhhHHHHHHHHH
Confidence 799999999988887654
No 193
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.67 E-value=3e+02 Score=30.02 Aligned_cols=161 Identities=9% Similarity=-0.004 Sum_probs=81.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhc
Q 000696 1135 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1214 (1349)
Q Consensus 1135 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~ 1214 (1349)
.|+++=-.+.+|..|-.++-++... ++.....-. + .+++.-+.+-.+-..+...........-..+.
T Consensus 25 ~~~~GV~~p~lr~lak~~~~~~~~~----------~~~~~l~~~-L--~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~ 91 (213)
T PF08713_consen 25 DPFLGVRTPDLRKLAKDIYKELKLS----------EELYELADE-L--WESGYREERYLALLILDKRRKKLTEEDLELLE 91 (213)
T ss_dssp SB-----HHHHHHHHHHHHHHHCTS----------HHHHHHHHH-H--HCSSCHHHHHHHHHHHHHCGGG--HHHHHHHH
T ss_pred ccccCcCcHHHHHHHHHHHhhcccc----------hHHHHHHHH-H--cCCchHHHHHHHHHHhHHHhhhhhHHHHHHHH
Confidence 3566666677777777766665431 111111111 1 13444455555444444433333221111122
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHH
Q 000696 1215 SHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGL 1294 (1349)
Q Consensus 1215 ~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~ 1294 (1349)
+. -+ ..+.=.....+|..+.......-..+......+.+|+.+-.|++|....-..... -+.+.++..
T Consensus 92 ~~--~~--~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------~~~~~~l~~ 159 (213)
T PF08713_consen 92 KW--LP--DIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------EDFDELLEI 159 (213)
T ss_dssp HC--CC--CCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------CHHHHHHHH
T ss_pred HH--hc--cCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------cCHHHHHHH
Confidence 11 11 1111123344444444443222245566667799999999999886432211111 345777888
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHh
Q 000696 1295 LVVKLSQSADAIVRATCSSSLGWLLKS 1321 (1349)
Q Consensus 1295 L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1321 (1349)
+.. +.+||+..||...+=+|..+++.
T Consensus 160 ~~~-~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 160 IEA-LLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHH-CTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHH-HcCCchHHHHHHHHHHHHHHHHh
Confidence 888 89999999999999888777643
No 194
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.27 E-value=40 Score=33.46 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=51.1
Q ss_pred hhhhhhcccccchhhHHHHHHhhhcCCCchhhhc---chHHHHHHHHH----hh-hhccHHHHHHHHHHHHHHh
Q 000696 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKS----LL-DEQNLAVQKAISELIVVMA 67 (1349)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~----~l-~d~~~kVr~al~~~I~ama 67 (1349)
++..||++++.+....||.+|-+++..+++.... +...+.+.++. .. .+.+..||..+.++|.+-+
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5778999999999999999999999988876432 34455565552 22 4678999999999987654
No 195
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.08 E-value=95 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~~l~ 1119 (1349)
|+.+..++...+..++..|+....+....++
T Consensus 207 L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 207 LRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 4444444454555666666666666655554
No 196
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.96 E-value=3.8e+02 Score=29.16 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=76.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhh----hhhhh---
Q 000696 1135 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFMEI--- 1207 (1349)
Q Consensus 1135 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~lL~~--- 1207 (1349)
..++-+.++.+|.+|+.+.+-+.+.|- ..| ..+++.|+--.-|+++.|+..+...+.... .++..
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qGL---vnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQGL---VNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcCC---CCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346678899999999999999998442 222 147788888888999999999988777765 22222
Q ss_pred ---hhhhhhccccCCCCCCCC---hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000696 1208 ---GVYGIFNSHCFNSDHRSD---YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1260 (1349)
Q Consensus 1208 ---~l~~lf~~~~~~~~~~l~---~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1260 (1349)
+..--|++....+..+.. ...++..+...+. .....-..|+.+.+..|....
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 222333443222222222 4567677766555 555666778888888777653
No 197
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.76 E-value=1.3e+02 Score=32.02 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1077 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~ 1077 (1349)
.|++.+++.|... .++.+|.-++|-||.++
T Consensus 10 ~LL~~L~~iLk~e---~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTE---QSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHhhhcc
Confidence 3445555555444 46999999999999886
No 198
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=8.9e+02 Score=30.74 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=110.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChh--HHHHHHHHHHHHhccCCcCCcch
Q 000696 1049 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVEP 1125 (1349)
Q Consensus 1049 ~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~~ 1125 (1349)
.++..|.+.+..++...|..++-|||-.-.+ +. ..+++-+..-..+.|.+ ++.-|-.+|+.+.--.-..++.+
T Consensus 450 palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts 525 (881)
T COG5110 450 PALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTS 525 (881)
T ss_pred hHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHH
Confidence 3566677777777888888888898876544 22 33444444445556664 44555556666655444455544
Q ss_pred hHHh-HHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH------------------------hhhhHHH
Q 000696 1126 ILLN-LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH------------------------AMLPRLI 1180 (1349)
Q Consensus 1126 ~l~~-i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~------------------------~~LvpLL 1180 (1349)
..++ ... |--.+.+..-+|-.|..| |.| -++++...+...+-+. -.++-=+
T Consensus 526 ~ilqtf~E--r~~~e~~tqw~RFlaLgL-a~L-f~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~l 601 (881)
T COG5110 526 LILQTFVE--RGKIESETQWFRFLALGL-ASL-FYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSL 601 (881)
T ss_pred HHHHHHHH--hhhhhhhhHHHHHHHHHH-HHH-HccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHH
Confidence 4333 111 111123334455544432 111 1233333333322211 1334456
Q ss_pred HhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000696 1181 LHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1260 (1349)
Q Consensus 1181 lHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1260 (1349)
+|.+|+.+.=--+-..|+-..-.+|++.+-+ ++++ ...+... ......+.| -.
T Consensus 602 Lhv~~e~~~D~~k~~ea~ie~~a~Lg~Alia------mGed--ig~eMvl----------------Rhf~h~mhy---g~ 654 (881)
T COG5110 602 LHVKDEFTGDTLKNEEALIESLALLGCALIA------MGED--IGSEMVL----------------RHFSHSMHY---GS 654 (881)
T ss_pred HhccCCCCcccchhhHHHHHHHHHhhhHHhh------hcch--hhHHHHH----------------HHhhhHhhc---Cc
Confidence 7877775432212223333333334442221 2221 1111111 111222222 24
Q ss_pred hhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1261 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1261 ~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
++||++-.+-.|.+. .+++|. -++..|.+ -.+|-|-.|-..+--|+|+++
T Consensus 655 ~hiR~~~PLa~gils-~SnPQm-------~vfDtL~r-~shd~dl~v~~ntIfamGLiG 704 (881)
T COG5110 655 SHIRSVLPLAYGILS-PSNPQM-------NVFDTLER-SSHDGDLNVIINTIFAMGLIG 704 (881)
T ss_pred HHHHHHHHHHHhccc-CCCcch-------HHHHHHHH-hccccchhHHHHHHHHhhccc
Confidence 567887776666443 222222 25666777 577888888887777777766
No 199
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=7.3e+02 Score=29.46 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=133.7
Q ss_pred hHHHHHHHHh---hhhcccCccchHHH---HHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000696 1006 EVQTICLILT---KSINRQQRFQREAA---AAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1349)
Q Consensus 1006 ~~~~i~~~L~---~~L~s~~~~~Ri~a---~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1349)
.+|.++..|. +...-.++.+|-.. +..+-.|++-. ....+..+.+-.|..++..++..|+.++++-+|-+...
T Consensus 34 eLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEd 112 (524)
T KOG4413|consen 34 ELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED 112 (524)
T ss_pred hhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc
Confidence 4566665542 12222455666553 33444455432 22355667788999999999999999999999977643
Q ss_pred ----hhhhh----HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH---HhhhcCcCCCCChHHHHH
Q 000696 1080 ----HIHQY----ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL---SVRLRNLQVSMNVKMRRN 1148 (1349)
Q Consensus 1080 ----~v~~~----~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i---~~~lrpffede~~~vR~a 1148 (1349)
.|..- -..+++-++..+...|+.|+-.|+..+++|-... .+.+.++.+= -.++|.+--+-++-+|.-
T Consensus 113 cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp--aaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 113 CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP--AALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH--HHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 11110 1234566677777778999999999999986432 2233222110 001111111222333332
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhhhHHHH-hccC-CChhHHHHHHHHHHhhh------hhhhh-hhhhhhccccCC
Q 000696 1149 AFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD-DDLSVRQACRNTLKQVA------PFMEI-GVYGIFNSHCFN 1219 (1349)
Q Consensus 1149 Ai~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl-HL~D-~~~~V~~ack~tL~~~a------~lL~~-~l~~lf~~~~~~ 1219 (1349)
-.+|.=.+.... .+...+--...|+.+|. -|+- ++.-|+-.|-.-....+ .|+-- .+-+++++--.+
T Consensus 191 VleLIieifSiS----pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 191 VLELIIEIFSIS----PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHHHHHHHHhcC----HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 223322222211 11111111234444433 3333 44455555543333322 11211 222222221111
Q ss_pred CCCCCChHHH--HHHHHHHHH---------HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCc
Q 000696 1220 SDHRSDYETF--VRDLTRQFV---------QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1220 ~~~~l~~~~f--~~~l~k~L~---------~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~ 1279 (1349)
.+ .=.|+.| +--+.|++. +.--+.+-.++.-.+.-..+..+....+|+--+|.+..+..
T Consensus 267 ad-sdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 267 AD-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred CC-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 11 1123333 111112111 11123445677788888899999999999999999998876
No 200
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=38.31 E-value=1.5e+02 Score=38.38 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC
Q 000696 1082 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1082 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1161 (1349)
......+|+-++.+++|.+-.+.-+++.++..+.+.+|...+...++--...+ +|-..+..||..+.-.||.+++..+
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999888999999999999999998666664443333334 7888899999999999999996332
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000696 1162 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1201 (1349)
Q Consensus 1162 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1201 (1349)
+. +|..-+.|++...+=.+|.+...|-......
T Consensus 462 ---~~----~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 462 ---KA----AVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred ---HH----HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22 3455667888888888999998886555443
No 201
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.09 E-value=1.9e+02 Score=33.72 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=78.3
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC--------cchhHHhHHhhhcCcC-----CCC
Q 000696 1075 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ-----VSM 1141 (1349)
Q Consensus 1075 nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~--------~~~~l~~i~~~lrpff-----ede 1141 (1349)
++....+..+-+-++|+++..+||.+..+...++..|..++....... +..++-+......-|. +++
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 344446778889999999999999999999999999999999776443 2333333222221111 255
Q ss_pred ChHHHHHHHHHHHHhhcc---CCCcchHH-HHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHhhhhhh
Q 000696 1142 NVKMRRNAFAAFGALSNF---GVGSQREA-FLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFM 1205 (1349)
Q Consensus 1142 ~~~vR~aAi~LfG~L~~~---~~~~~~~~-~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~lL 1205 (1349)
...+=..|+...-.|.+. .++..+.. +.+-+..++..-+.|-.+ +++.++..--..+..+..-|
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~l 255 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDEL 255 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHh
Confidence 566666677666666552 11222222 333344546666666655 45566655444444444333
No 202
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=1.2e+03 Score=31.40 Aligned_cols=397 Identities=11% Similarity=0.102 Sum_probs=187.0
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----cCcCCccchhhHHHHHHHHhhhcHH--------HHHHHHHHH
Q 000696 295 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQ----ANIAIPTNRLGLAKAMGLVAASHLD--------AVLEMLKGI 362 (1349)
Q Consensus 295 ~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~----~~~~~~~ereG~A~~~G~~A~~Hld--------~vL~~L~~~ 362 (1349)
..--+||+.-+|-.++..+..-.+-.|...++-. +.|-...+---+-.++|.+|+..+. ++...+...
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 3344788888888888888444555566655432 3444555555688888988887654 333333222
Q ss_pred Hhhhccccch--hhhh-hccccccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhHhhhhh--ccchhHHHH
Q 000696 363 LDNIGQSLFQ--RLLS-FFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLH--VRHHTAKQA 437 (1349)
Q Consensus 363 ~~~~~~~~~~--~~l~-~~k~~~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~f~~--~kd~~~K~s 437 (1349)
..-.+...+. -.+. .|.-- +..+...-.+...-.++..|| +.+.+..|..+ + ...-+.. ....+..+.
T Consensus 537 s~~l~e~P~~ln~sl~~L~~~L----h~sk~s~q~i~tl~tlC~~C~-~~L~py~d~~~-a-~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 537 SNWLGEHPMYLNPSLPLLFQGL----HNSKESEQAISTLKTLCETCP-ESLDPYADQFS-A-VCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred HHHHhcCCcccCchHHHHHHHh----cCchHHHHHHHHHHHHHHhhh-hhCchHHHHHH-H-HHHHHhcccccCchHHHH
Confidence 2110000000 0000 11100 000111112223556677775 55666666522 1 2222221 234456677
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCCCChhHHH
Q 000696 438 VITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRN 517 (1349)
Q Consensus 438 ~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~~r~~a~~a~t~L~~L~P~l~~e~~~ 517 (1349)
+++||.-+.+.+.+.. ..+ .-..|++.+..-++.- +.|-++ ...
T Consensus 610 lm~sIGyvls~~~pEe--~~k----yl~~lin~il~qle~~----------------------------l~~~i~--~~e 653 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEE--IPK----YLMKLINPILSQLEIN----------------------------LAPGID--DQE 653 (982)
T ss_pred HHHHHHHHHHhccHHh--HHH----HHHHHHHHHHHHHHHh----------------------------hcCCCC--CHH
Confidence 7888777777765421 111 1223333333222211 122221 122
Q ss_pred HHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHhhHHHhcChhHHhhhHHHHHHHHHHH
Q 000696 518 HVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLL 597 (1349)
Q Consensus 518 ~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~eR~RA~~~~~~lL~ 597 (1349)
+-+.+|+ .+..+..|.++++-+...+ .-........||=+++...-|+|++..+-+++.
T Consensus 654 ~~l~~~~---------------~l~~iS~LftSL~~~~~~~------d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 654 NHLRIAF---------------QLNTISALFTSLINKKDII------DTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHH---------------HHHHHHHHHhccCCCCccc------cccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 2222222 1122344445555443321 112233466788888888888888888887777
Q ss_pred HHHhh--hhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHH
Q 000696 598 KFRTL--CVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQ 675 (1349)
Q Consensus 598 ~~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~ 675 (1349)
.+.+. -|...|..-.|+ .....+| |..| -.+.+=..++++.++|.-+-.++-...+-+=+.
T Consensus 713 ~~~~~s~vve~~C~i~~~~--------------v~~~~~s-F~~p--~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~ 775 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKG--------------VRSLLTS-FPEP--MLPSLCPFIVRFLTSCLAVTLSLIAACLLAKST 775 (982)
T ss_pred HHhcchhHHHHHHHHHHhc--------------ccccccc-chhh--hHHHHHHHHHHhccchHHHHHHHHHHHHHhhhc
Confidence 65541 111233211122 1122233 4222 224566778889999976655444433222110
Q ss_pred HHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCC-CCC--hhHHHHHHHHHHHccCC------hhHHHHHHH-
Q 000696 676 LFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA-SID--PSEVFNRIVSSVCILLT------KDELVATLH- 745 (1349)
Q Consensus 676 Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~-~~~--~~~~~~~i~~~i~~~L~------~~el~~ll~- 745 (1349)
- ++--.....+. ...+.+ -+..+.... .++ .-..|..+...+-|+.| .-..+.++.
T Consensus 776 ~----------~~~~~lv~~~~-~~~~q~---sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~ 841 (982)
T KOG2022|consen 776 V----------EQCKPLVGQDM-ANAFQQ---SLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILI 841 (982)
T ss_pred c----------ccccccHHHHH-HHHHHH---HHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHH
Confidence 0 00000000000 111111 111111111 112 22222233333333333 345677888
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHH
Q 000696 746 SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQ 787 (1349)
Q Consensus 746 ~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~ 787 (1349)
..+.+|+.|++.-.++|++.++.++...++..-.+ |-+.+.
T Consensus 842 ~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~t-v~~~V~ 882 (982)
T KOG2022|consen 842 CAFILLNSPEPTTIRAASQFLTALATYATSHDLVT-VTSVVA 882 (982)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHH-HHHHHH
Confidence 88999999999999999999999988777644233 444443
No 203
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=35.90 E-value=5.5e+02 Score=29.11 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=59.2
Q ss_pred cCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000696 1058 VSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1349)
Q Consensus 1058 l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1137 (1349)
++|+++.|-+-++++.+++-.. ++.-+ -.+.+..-.+++|..+..-+ ...
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~--------~~~~i---~~~~~~~~~W~~~~~lK~~I-------------------l~~ 51 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPL--------VFRWI---CVNPSDEQLWESMNELKDRI-------------------LSL 51 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHH--------HHHHH---S--HHHHHHHHHHHHHHHHH-------------------HHG
T ss_pred CCCCcHHHHHHHHHHHHHHHHH--------HHHHH---cCCchHHHHHHHHHHHHHHH-------------------HHH
Confidence 5789999999999987776421 11111 01112234555555554422 124
Q ss_pred CCCCChHHHHHHHHHHHHhhcc-CCCc-------------------------chHHHHHHHHhhhhHHHHhccCCC--hh
Q 000696 1138 QVSMNVKMRRNAFAAFGALSNF-GVGS-------------------------QREAFLEQIHAMLPRLILHIYDDD--LS 1189 (1349)
Q Consensus 1138 fede~~~vR~aAi~LfG~L~~~-~~~~-------------------------~~~~~~eQv~~~LvpLLlHL~D~~--~~ 1189 (1349)
|+++++.||..|+.....++-. ..+. ....+.++..+.|--|+-+++++. +.
T Consensus 52 ~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~ 131 (239)
T PF11935_consen 52 WDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSP 131 (239)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HH
T ss_pred hcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 6666677777777666655531 0000 122344555555555665666654 55
Q ss_pred HHHHHHHHHHhhh
Q 000696 1190 VRQACRNTLKQVA 1202 (1349)
Q Consensus 1190 V~~ack~tL~~~a 1202 (1349)
+..+|-.+|..++
T Consensus 132 ~~~a~insL~~Ia 144 (239)
T PF11935_consen 132 LLTAIINSLSNIA 144 (239)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566655555444
No 204
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=35.43 E-value=8.9e+02 Score=31.70 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=45.8
Q ss_pred hhcCCChh----HHHHHHHHHH-hhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH--Hhcccccc
Q 000696 1255 AFEAPWPI----IQANAIYFSS-SILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL--KSINSHSW 1327 (1349)
Q Consensus 1255 ylkS~~~~----IR~~A~~fiG-~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~--k~~~~~~~ 1327 (1349)
|+-+.+.+ ||.-|...+. ++++......+ -+.+ +.-||-|..|..|-||+..+. +-|..+-.
T Consensus 699 Y~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~----------y~iR-~~~dki~~lR~l~yqa~eqI~v~~~s~~~~~ 767 (993)
T COG5234 699 YLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKL----------YIIR-QTFDKIDSLRGLAYQALEQIRVHYLSRRCEA 767 (993)
T ss_pred hccccccchhHHHHHHHHHHHHHHhhccccCCch----------hHHH-HhhcccHHHHhhhhhhhhheeeehhhhhhhh
Confidence 55555533 6887876655 55555542221 3556 678999999999999988765 33333322
Q ss_pred ccccccccccccccccc
Q 000696 1328 RSTRLERVESFRWGYES 1344 (1349)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~ 1344 (1349)
+.+.-- -.++|+||.+
T Consensus 768 ~~~~g~-~~~fr~g~~v 783 (993)
T COG5234 768 LTNIGN-RISFRNGPNV 783 (993)
T ss_pred hccccc-hheeecCCCC
Confidence 322222 2456666654
No 205
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=35.35 E-value=1.1e+03 Score=30.39 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhccCCCcchHH-HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhh
Q 000696 1145 MRRNAFAAFGALSNFGVGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1205 (1349)
Q Consensus 1145 vR~aAi~LfG~L~~~~~~~~~~~-~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL 1205 (1349)
-....+.||....+....-..+. =...+..-|.....| .++.|+++|..+|.+++.-.
T Consensus 444 ~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvH---vd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 444 DQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVH---VDPNIRESAAQALKRLARDK 502 (552)
T ss_pred cccchhHHHHHHHHHccccCCCCCcHHHHHHHHhccccc---CCHHHHHHHHHHHHHHHHcC
Confidence 33777899999887422211111 124455566666666 47799999999999998754
No 206
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=35.12 E-value=3e+02 Score=38.06 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---hhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHHhccCC
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---HQYATQVLSVILALLDDLDE--SVQLTAVSCLLTILKSSS 1119 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v---~~~~~~lL~all~~L~d~d~--~V~leAm~~L~~lL~~l~ 1119 (1349)
.+...+++...+++.|++-.||.-|.+-+..++...+ ..-...++..+.+.+.+-|+ .-.-.-|..|.++.-...
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e 283 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE 283 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH
Confidence 3445677888899999999999999998887765421 11123333333333333232 112222333333332210
Q ss_pred cCCc---chhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcc-----------hHHHHHHHHhhhhHHHHhccC
Q 000696 1120 KDAV---EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----------REAFLEQIHAMLPRLILHIYD 1185 (1349)
Q Consensus 1120 ~~~~---~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----------~~~~~eQv~~~LvpLLlHL~D 1185 (1349)
...+ -+.-..++.++.||.-++=..+|.++.+..-.+.....++. +..|..-++...++.|.|+.+
T Consensus 284 vl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~ 363 (1549)
T KOG0392|consen 284 VLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILLLESFNEILDLSEK 363 (1549)
T ss_pred HHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhhhh
Confidence 0000 01114567788999999999999999999988887544433 223334466677888888887
Q ss_pred CChhH----HHHHHHHHHhhhhhhh
Q 000696 1186 DDLSV----RQACRNTLKQVAPFME 1206 (1349)
Q Consensus 1186 ~~~~V----~~ack~tL~~~a~lL~ 1206 (1349)
.--.| ..+|.+.+.++.+.++
T Consensus 364 ~~v~v~~~~k~a~~~~~~~~~l~~~ 388 (1549)
T KOG0392|consen 364 VWVTVSKIEKTAAAYLLSWIYLLIQ 388 (1549)
T ss_pred eeeehHHHHHHHHHHHHHHHHhhhC
Confidence 65432 4566666666665543
No 207
>PF05536 Neurochondrin: Neurochondrin
Probab=35.08 E-value=1.1e+03 Score=30.31 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=108.2
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcch-------hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC-
Q 000696 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI-------HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD- 1121 (1349)
Q Consensus 1050 ~i~~L~~~l~D~~~~VR~lslrGLgnl~~~-------~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~- 1121 (1349)
.+..|.+-..+ ++.....+++-+.++... +-......+++.+-..+.........++..-|+.+|...+..
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 33344444333 455555565555544221 112333455666666666556678888899999999887421
Q ss_pred ----CcchhHHhHHhhhcCcCC-CCChHHHHHHHHHHHHhhccCCC-------c-chHHHHHH-HHhhhhHHHHhccC--
Q 000696 1122 ----AVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVG-------S-QREAFLEQ-IHAMLPRLILHIYD-- 1185 (1349)
Q Consensus 1122 ----~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~-------~-~~~~~~eQ-v~~~LvpLLlHL~D-- 1185 (1349)
....-..+|..-|+..+. +-.+.-|..|..+.+.+....+. + ..+.|.-- |.-+.|-.=.-|.+
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~ 299 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELL 299 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhh
Confidence 111233444444444443 45688899999999999874221 1 11223222 11122211122222
Q ss_pred --CChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCCh
Q 000696 1186 --DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1261 (1349)
Q Consensus 1186 --~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~ 1261 (1349)
.++.-.......|..|-.+++..+..+.+... .++..++.+.+ ..+-+ .+..-+...+.|+++-|.
T Consensus 300 ~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~-~~~~~~~~~~l-~kl~~--------~l~e~~~~vle~L~~~~d 367 (543)
T PF05536_consen 300 EQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLE-EESLDLDPDTL-LKLRT--------SLSETFSAVLEYLRDVWD 367 (543)
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCCCHHHH-HHHHH--------HHHHHHHHHHHHHHHhhh
Confidence 55555566778888888888886666555321 12233443333 23333 344456667778887777
No 208
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.73 E-value=1.3e+02 Score=40.14 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhhhhhc------------------------------
Q 000696 1166 EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN------------------------------ 1214 (1349)
Q Consensus 1166 ~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~------------------------------ 1214 (1349)
+.|...+...+.|++.|+.++++.|.+++..++..++.-++. .+..++.
T Consensus 581 ~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vV 660 (1014)
T KOG4524|consen 581 EEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVV 660 (1014)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHH
Q ss_pred -cccCCCCCCCCh-HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhhccCchhhhhhccH---
Q 000696 1215 -SHCFNSDHRSDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS-SILCLCDDQHILSLFY--- 1288 (1349)
Q Consensus 1215 -~~~~~~~~~l~~-~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG-~l~~~~~~~~~~~~~~--- 1288 (1349)
+ ..+++.+++ ++.+.++|+.+-..+.-. |.+||.-=...||..+.+|+. .++.+..+++..+...
T Consensus 661 l~--~s~~~~i~~l~dvvq~i~~~lD~yH~~~-------~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~ 731 (1014)
T KOG4524|consen 661 LQ--YSDYGTIPNLKDVVQTIFKLLDYYHGYS-------CLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTKVLN 731 (1014)
T ss_pred hh--cCCCCchhhHHHHHHHHHHHHHHhcccc-------hhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhh
Q ss_pred ------HHHHHHHHHHhccCCChhHHHHH
Q 000696 1289 ------TQVFGLLVVKLSQSADAIVRATC 1311 (1349)
Q Consensus 1289 ------e~l~~~L~~~Ll~Dpdp~VR~~A 1311 (1349)
+...+.... +.+|-.|..+.++
T Consensus 732 e~p~~~~e~~n~~~d-~~~~l~~~~~e~~ 759 (1014)
T KOG4524|consen 732 ELPTQVKELINDEND-LKDDLEPSNFEKD 759 (1014)
T ss_pred cchhhHHHhhhhHHH-HHHhhhhHHHHHH
No 209
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=34.28 E-value=2.4e+02 Score=34.54 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHhhhhcccCccchHHHHHHHHHhhhcC-----CChhcHHHHHHHHHHh-hcCCCChhHHHHHhhhccCCcch---h
Q 000696 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYS-----GGFDSLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPSI---H 1080 (1349)
Q Consensus 1010 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-----~~~~~l~~~~i~~L~~-~l~D~~~~VR~lslrGLgnl~~~---~ 1080 (1349)
++.++...+.|.+..--.++..++..|-+.- .+....++.+++.|.+ .-.|.|-.+...++-+|-|+..- |
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 3444444444444333444444444444421 1123334556667766 67889999999999999998743 3
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000696 1081 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1349)
Q Consensus 1081 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1118 (1349)
.+-....+..|++.-+.-..++|+-.-+.+|+.+....
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 33334456778888888778899999999999888654
No 210
>PRK14707 hypothetical protein; Provisional
Probab=34.28 E-value=1.9e+03 Score=32.88 Aligned_cols=334 Identities=14% Similarity=0.021 Sum_probs=175.8
Q ss_pred HhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 000696 925 KSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAG 997 (1349)
Q Consensus 925 ~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll-------~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr 997 (1349)
.+=||-+...|.-+|-+-+ -.+|+.+..+|=.-+ ....-+++.+.|.--..|-+.......+..||.
T Consensus 789 aL~pQ~vAn~LNALSKWPe------~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 789 VLKPREMTNALNALSKWPD------TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hcCHHHHHHHHHHhhcCCC------chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3447766666655544332 245777666654333 334556677777777789988888889988998
Q ss_pred Hhhhc-------CchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcH----HHHHHHHHHhhcCCCChhHH
Q 000696 998 CVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVR 1066 (1349)
Q Consensus 998 ~m~~~-------~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR 1066 (1349)
.+... +++++...++-|.+-- ..+..|.+|.+.-+++.+.+...+.+ +-+++|.|.+|=..+ .=|
T Consensus 863 RLa~e~~LR~aL~~QevantLNALSKWP--d~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~--~Cr 938 (2710)
T PRK14707 863 RLADEPELRHTLTAHGVVIVLNALSKWP--NVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIP--VCA 938 (2710)
T ss_pred HHhcChhhhhccchHHHHHHHhhhccCC--CcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCch--HHH
Confidence 77542 3456777777777662 23445667777777777665432222 234677777776533 223
Q ss_pred HHHhhhccCCcch--hhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHh-------ccCCcCCcchhHHhHHhhhcC
Q 000696 1067 GLCLRGLVQIPSI--HIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRN 1136 (1349)
Q Consensus 1067 ~lslrGLgnl~~~--~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL-------~~l~~~~~~~~l~~i~~~lrp 1136 (1349)
..+..=-+.++.. ..+.+-++-+...+++|.. .|++.-..|...|..-| +.++.++++..+-.++. .|
T Consensus 939 ~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSK--WP 1016 (2710)
T PRK14707 939 TAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSK--WL 1016 (2710)
T ss_pred HHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhc--CC
Confidence 3332222233322 2344456667777788876 34444444444444322 44555555544433322 22
Q ss_pred cCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hhhhhh
Q 000696 1137 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1213 (1349)
Q Consensus 1137 ffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf 1213 (1349)
+.+.=|.+|..+=+.|.. +-...++|-.| |-++|--|=- =|+.+ .|+.|-..++.-|.- .+..-|
T Consensus 1017 ----d~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSK---WPde~---~Cr~Aa~aLA~rL~~d~~Lr~Al 1084 (2710)
T PRK14707 1017 ----QMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCK---WPEMP---VCLAAASALAERLSDDLVLRNAL 1084 (2710)
T ss_pred ----CchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhcc---CCCch---hHHHHHHHHHHHhhccHHHHHhh
Confidence 456677777777777654 11123444433 2222222111 11111 333333333321111 111101
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhcCCC-hhHHHHHHHHHHhhhccCchhhhhhccHHHH
Q 000696 1214 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQV 1291 (1349)
Q Consensus 1214 ~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~-ylkS~~-~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l 1291 (1349)
.| ..+.++++ +.|=|. +.-|.+|..+++-+.... ..+...+...+
T Consensus 1085 ---------------------------~a----Q~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~--~l~~~fd~q~v 1131 (2710)
T PRK14707 1085 ---------------------------DS----QGFGNALNALSKWPDSPVCAAAASALAKRLTDDA--GLRHVFDPINV 1131 (2710)
T ss_pred ---------------------------ch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccc--chhccCCHHHH
Confidence 01 12222333 333333 337778888888776433 33444555666
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHH
Q 000696 1292 FGLLVVKLSQSADAIVRATCSSSLG 1316 (1349)
Q Consensus 1292 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1316 (1349)
-+++-. |.+=|+..+.+.|+++|.
T Consensus 1132 A~~LNA-LSKWp~~~~cr~Aa~~LA 1155 (2710)
T PRK14707 1132 SQALNA-LSKWPGTQACESAIDVLA 1155 (2710)
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHH
Confidence 666666 666688888888877764
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.27 E-value=54 Score=33.13 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhc
Q 000696 1089 LSVILALLDDLDESVQLTAVSCLLTILK 1116 (1349)
Q Consensus 1089 L~all~~L~d~d~~V~leAm~~L~~lL~ 1116 (1349)
-..+|..+.+.|++|..+|+.++++++.
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999874
No 212
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=34.02 E-value=8.3e+02 Score=31.50 Aligned_cols=152 Identities=12% Similarity=0.118 Sum_probs=87.0
Q ss_pred hhccccCcHHHHHHHHHHhhhhcCC---CChhhHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHhcCcCCccchh
Q 000696 268 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 338 (1349)
Q Consensus 268 l~~i~d~~W~~~L~~el~~ql~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 338 (1349)
-..++|.+|.++=.+.++=-+.+-. +...||.|+...+--.|+-| +||++|.+.+.-.+.+ | | |
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ--Y--p--R- 559 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ--Y--P--R- 559 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc--c--h--H-
Confidence 3567888999876666666555554 34789999988776666544 7888887666554441 1 1 1
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhccccccccchHhHHHHHHHHHHHHHhcCCchhHHHHHH---
Q 000696 339 GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARID--- 415 (1349)
Q Consensus 339 G~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve--- 415 (1349)
|=.+--+-|.+|..||=+|... . -+.++-..--.|=.|+..||-.-+.++--
T Consensus 560 -----FLkahw~FLkTVv~KLFEFMhE---------------~-----HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesE 614 (1053)
T COG5101 560 -----FLKAHWSFLKTVVKKLFEFMHE---------------D-----HEGVQDMACDTFIKIVQKCPVHFVTQQEGESE 614 (1053)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhh---------------h-----hhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCC
Confidence 2223345678888888776642 1 11222222233556777887665544432
Q ss_pred ---HHhhhhhHhhhhhccchhHHHHHHHHHHHHHHHHHhh
Q 000696 416 ---ALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINA 452 (1349)
Q Consensus 416 ---~~I~~~i~~~f~~~kd~~~K~s~l~si~~i~~av~~~ 452 (1349)
..|++|+-+ ..+--.+.-|-.|..|..++-.++...
T Consensus 615 pFI~~Iirnl~k-tT~dL~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 615 PFIVYIIRNLPK-TTGDLEPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred cHHHHHHHhhhh-hcccCChHHHhHHHHHHhHHHhccchh
Confidence 223333221 111234456677778877776665443
No 213
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.91 E-value=40 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.3
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccC
Q 000696 1064 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1098 (1349)
Q Consensus 1064 ~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d 1098 (1349)
.||..++.+||+++. +..++.+...|.|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 589999999999975 4556666666654
No 214
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=6.6e+02 Score=32.60 Aligned_cols=277 Identities=17% Similarity=0.101 Sum_probs=136.6
Q ss_pred chhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhh
Q 000696 1004 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ 1083 (1349)
Q Consensus 1004 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~ 1083 (1349)
-|-+-.-+.++-+++-+.++. +.+++..=..+.++- ... --+.++..|.+.+..++..+|.-++-|||-.-.+.-
T Consensus 410 ~Wnvd~gL~qldkylys~~~~-ikaGaLLgigi~~~g-v~n-e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq-- 484 (878)
T KOG2005|consen 410 LWNVDKGLEQLDKYLYSDESY-IKAGALLGIGISNSG-VFN-ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ-- 484 (878)
T ss_pred eecchhhHHHHHHHhhcCCch-hhhccceeeeeeccc-ccc-ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--
Confidence 345566777777777765443 333332222233321 111 124567788888888999999999999996533311
Q ss_pred hHHHHHHHHHhhccCCChh--HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCC-----hHHHHHHHHHHHHh
Q 000696 1084 YATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-----VKMRRNAFAAFGAL 1156 (1349)
Q Consensus 1084 ~~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~-----~~vR~aAi~LfG~L 1156 (1349)
..+++.-+..-+.|.+.+ |+.-|-.+|+.|.--.-..++.+.+++ .|.|+.. .-+|-.+..| .+
T Consensus 485 -~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilq------tlmekse~El~d~~~RFL~LGL--~l 555 (878)
T KOG2005|consen 485 -REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQ------TLMEKSETELEDQWFRFLALGL--AL 555 (878)
T ss_pred -hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHH------HHHHhhhhhhhchHHHHHHHHH--HH
Confidence 122333334445555655 555555666666544334444333222 3444433 3445444332 11
Q ss_pred hccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhh-----hhhhh-h--hhhhhccccCCCCCCCChHH
Q 000696 1157 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-----PFMEI-G--VYGIFNSHCFNSDHRSDYET 1228 (1349)
Q Consensus 1157 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-----~lL~~-~--l~~lf~~~~~~~~~~l~~~~ 1228 (1349)
.-.+.+...+++.+-+.. -+...++.|-..+..|+ +.++. + +......| ..+++. +-+-
T Consensus 556 lflgkqe~~d~~~e~~~~-----------i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~-~~~~e~-~~~~ 622 (878)
T KOG2005|consen 556 LFLGKQESVDAVVETIKA-----------IEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEH-DADLES-EQEL 622 (878)
T ss_pred HHhcccchHHHHHHHHHH-----------hhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCC-ccchhh-hccc
Confidence 123344444444333221 12334455555554444 33333 1 11111122 111100 0000
Q ss_pred HHHHHHHH-HHHh-CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChh
Q 000696 1229 FVRDLTRQ-FVQH-FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAI 1306 (1349)
Q Consensus 1229 f~~~l~k~-L~~~-~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~ 1306 (1349)
.+--+.-. +.++ -.+..-..+...+.| -.++||++-.+-.|.+.-.-| + --++..|.+ ..+|.|+.
T Consensus 623 avLgiAliAMgeeig~eM~lR~f~h~l~y---ge~~iRravPLal~llsvSNP-q-------~~vlDtLsk-~shd~D~e 690 (878)
T KOG2005|consen 623 AVLGIALIAMGEEIGSEMVLRHFGHLLHY---GEPHIRRAVPLALGLLSVSNP-Q-------VNVLDTLSK-FSHDGDLE 690 (878)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhccCCC-c-------chHHHHHHH-hccCcchH
Confidence 00011111 1111 122333334444444 367899988888886543322 2 235777888 89999999
Q ss_pred HHHHHHHHHHHHH
Q 000696 1307 VRATCSSSLGWLL 1319 (1349)
Q Consensus 1307 VR~~Aa~aL~~l~ 1319 (1349)
|-..|--|+|+++
T Consensus 691 va~naIfamGLiG 703 (878)
T KOG2005|consen 691 VAMNAIFAMGLIG 703 (878)
T ss_pred HHHHHHHHhcccc
Confidence 9999999999887
No 215
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=32.32 E-value=7.3e+02 Score=35.28 Aligned_cols=32 Identities=13% Similarity=-0.035 Sum_probs=24.0
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHHHH
Q 000696 645 LCLGNRVIMYLPRCADTDSEVRKISAQILDQL 676 (1349)
Q Consensus 645 ~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~L 676 (1349)
.+||.|||+|.+.|.-.--.|-..|.-++-+.
T Consensus 481 GALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 481 GALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred chHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 38999999999999887666666555555443
No 216
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.20 E-value=2.9e+02 Score=28.36 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCC--hhH
Q 000696 1230 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD--AIV 1307 (1349)
Q Consensus 1230 ~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd--p~V 1307 (1349)
.-++|-.+-.. ++....-+...-.-++++.+.+..-|...+..++++.......++........|.. +..++. |.|
T Consensus 21 ~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~~~~~V 98 (133)
T smart00288 21 ILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKYPLPLV 98 (133)
T ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCCCcHHH
Confidence 34778776555 67777777777779999999999999999999999988766666767777788888 565543 338
Q ss_pred HHHHHHHHHHHH
Q 000696 1308 RATCSSSLGWLL 1319 (1349)
Q Consensus 1308 R~~Aa~aL~~l~ 1319 (1349)
|.++.+.+..-.
T Consensus 99 k~kil~li~~W~ 110 (133)
T smart00288 99 KKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHH
Confidence 888777755443
No 217
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.55 E-value=9.9e+02 Score=34.91 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhc----chHHHHHHHhc---CCCC--ChhhHHHHHHHHHH-HhhhcCchhHHHHHHHHhhhhcccC
Q 000696 953 LRAILTSFQAFCECVG----DLEMRKILARD---GEQN--DKEKWINLIGDVAG-CVSIKRPKEVQTICLILTKSINRQQ 1022 (1349)
Q Consensus 953 ~~~aleAlk~ll~~~g----~~~~~~~L~~~---g~W~--~~e~~~~gV~lLAr-~m~~~~~~~~~~i~~~L~~~L~s~~ 1022 (1349)
|+....++|.+-..-| ..+....+... +.-. .+-.-.-+...+|| +-+....+-+..+....+.-+.|-.
T Consensus 849 ~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~ 928 (2067)
T KOG1822|consen 849 WQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASAR 928 (2067)
T ss_pred HHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcC
Q ss_pred ccchHHHHHHHHHhhhcCCC---hhcHHHHHHHHHHhhcCCCCh-hHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000696 1023 RFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1095 (1349)
Q Consensus 1023 ~~~Ri~a~af~sELl~~~~~---~~~l~~~~i~~L~~~l~D~~~-~VR~lslrGLgnl~~~---~v~~~~~~lL~all~~ 1095 (1349)
+..+-+.....-..+..-++ ...-+.+.+..|..--.|+++ .|+.++|++|.-+... -.+.|..+-+..++..
T Consensus 929 d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~l 1008 (2067)
T KOG1822|consen 929 DPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKL 1008 (2067)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHH
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC--------------------CCChHHHHHHHHHHHH
Q 000696 1096 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--------------------SMNVKMRRNAFAAFGA 1155 (1349)
Q Consensus 1096 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe--------------------de~~~vR~aAi~LfG~ 1155 (1349)
|-. +++...+--.+.++.+. +..+.+.++-.+-..++|-++ +++..+-++||..|-+
T Consensus 1009 Lls-~p~~~~ev~q~~~R~~~--~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqq 1085 (2067)
T KOG1822|consen 1009 LLS-VPTSHVEVHQCYNRCFN--GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQ 1085 (2067)
T ss_pred cCC-CCcchhhhhhhhccccc--cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q ss_pred hhcc-CCCcchHHHHHHHHhhh
Q 000696 1156 LSNF-GVGSQREAFLEQIHAML 1176 (1349)
Q Consensus 1156 L~~~-~~~~~~~~~~eQv~~~L 1176 (1349)
+.-| .+....+.|.-++...+
T Consensus 1086 lhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1086 LHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred HHhhcchhccHHHHHHHHHHHh
No 218
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=31.54 E-value=8e+02 Score=27.66 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHhhhcC--chhHHHHHHHHhhhh----c-ccCccc-hHHHHHHHHHhhhc-CCChhcHHHHHHHHHHh
Q 000696 986 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSI----N-RQQRFQ-REAAAAALSEFVRY-SGGFDSLLEQMVEALCR 1056 (1349)
Q Consensus 986 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L----~-s~~~~~-Ri~a~af~sELl~~-~~~~~~l~~~~i~~L~~ 1056 (1349)
+.+.-+..++++-..+.. .+.+++++..+.... . +....+ .++.++-.-++... |.....++..+...|.
T Consensus 53 ~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~- 131 (234)
T PF12530_consen 53 ELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN- 131 (234)
T ss_pred hHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh-
Confidence 345566677777665432 145555555422221 1 111111 23323334444433 2223334444444443
Q ss_pred hcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhh
Q 000696 1057 HVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRL 1134 (1349)
Q Consensus 1057 ~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~l 1134 (1349)
.+.++.++.+|++||..+-..++-.+. ....++..-|+....+.+..++..|-.++....-+ ..+.+-.++...+
T Consensus 132 --~~~~~~~~alale~l~~Lc~~~vvd~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 132 --QSCDEVAQALALEALAPLCEAEVVDFY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 888999999999999999766544432 33466666665556778888888888887665433 2344444555555
Q ss_pred cCcCCCCC
Q 000696 1135 RNLQVSMN 1142 (1349)
Q Consensus 1135 rpffede~ 1142 (1349)
..+-...+
T Consensus 209 W~~~~~~~ 216 (234)
T PF12530_consen 209 WEYTSSSD 216 (234)
T ss_pred Hhhccccc
Confidence 55444444
No 219
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.23 E-value=4.1e+02 Score=27.13 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccC---CCh
Q 000696 1229 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS---ADA 1305 (1349)
Q Consensus 1229 f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D---pdp 1305 (1349)
...++|-.+- ..++....-+...-..++++.+.+...|...+..++++.+.....++....-...|.. +..+ .++
T Consensus 20 ~il~icd~I~-~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~~~~~~~~~ 97 (133)
T cd03561 20 LNLELCDLIN-LKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-HhCCCCCCCH
Confidence 3446676554 3356666666666679999999999999999999999998766666655444445888 5654 588
Q ss_pred hHHHHHHHHHHHHH
Q 000696 1306 IVRATCSSSLGWLL 1319 (1349)
Q Consensus 1306 ~VR~~Aa~aL~~l~ 1319 (1349)
.||.++.+.+....
T Consensus 98 ~Vk~kil~ll~~W~ 111 (133)
T cd03561 98 KVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888755443
No 220
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=30.86 E-value=3.2e+02 Score=28.19 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccC-C
Q 000696 1225 DYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-A 1303 (1349)
Q Consensus 1225 ~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-p 1303 (1349)
+++.+ -++|-.+-.. ++....-+...-..++++.+.+...|..++..++++.++....++......+.|.. +..+ +
T Consensus 22 Dw~~~-l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~-l~~~~~ 98 (140)
T PF00790_consen 22 DWSLI-LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK-LIKSKK 98 (140)
T ss_dssp -HHHH-HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH-HHHHTT
T ss_pred CHHHH-HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH-HHccCC
Confidence 34434 4788855544 77778888887889999999999999999999999998777777766667777777 4443 2
Q ss_pred C-hh--HHHHHHHHHHHHH
Q 000696 1304 D-AI--VRATCSSSLGWLL 1319 (1349)
Q Consensus 1304 d-p~--VR~~Aa~aL~~l~ 1319 (1349)
. +. ||.++.+-+....
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHSHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 2 22 8888877755444
No 221
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=30.56 E-value=6.6e+02 Score=30.15 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhc------HH---HHHH
Q 000696 981 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDS------LL---EQMV 1051 (1349)
Q Consensus 981 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~------l~---~~~i 1051 (1349)
|+.+.+.-.+.|..||..+... .++..++..|..-+=.-|--++.+|+-+++....... +. ..++
T Consensus 54 G~~e~ep~~e~v~qLa~Ei~~~------dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil 127 (335)
T PF08569_consen 54 GDGEPEPNPEQVAQLAQEIYRS------DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL 127 (335)
T ss_dssp S-SS----HHHHHHHHHHHHHH------THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH
Confidence 4444444455577788877543 3444455555554434555666677777775433222 11 1245
Q ss_pred HHHHhhcCCCChhH-HHHHhhhccCCcchhhhhhHHHH-----HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcch
Q 000696 1052 EALCRHVSDESPTV-RGLCLRGLVQIPSIHIHQYATQV-----LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1125 (1349)
Q Consensus 1052 ~~L~~~l~D~~~~V-R~lslrGLgnl~~~~v~~~~~~l-----L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~ 1125 (1349)
..|..+-.+|+-.. -..-+|-.- +.......+ +.-+..-.+..+=+|.-+|+.++..++..= ..-++.
T Consensus 128 ~~L~~gy~~~dial~~g~mlRec~-----k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~ 201 (335)
T PF08569_consen 128 DILLRGYENPDIALNCGDMLRECI-----KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAE 201 (335)
T ss_dssp HHHHHGGGSTTTHHHHHHHHHHHT-----TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHH
T ss_pred HHHHHHhcCccccchHHHHHHHHH-----hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHH
Confidence 55666665554322 111111000 111111111 111223333344579999999999999752 122222
Q ss_pred hHH----hHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH--hhhhHHHHhccCCChhHHHHH
Q 000696 1126 ILL----NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH--AMLPRLILHIYDDDLSVRQAC 1194 (1349)
Q Consensus 1126 ~l~----~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ac 1194 (1349)
++. ......-.+.+.+|.-.|.-|+.|+|++.- .......|..=|- .+|--++.+|+|....|+-.+
T Consensus 202 fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA 274 (335)
T PF08569_consen 202 FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEA 274 (335)
T ss_dssp HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHH
Confidence 222 222334566788999999999999999995 2233333332222 577888899999999987766
No 222
>PF05536 Neurochondrin: Neurochondrin
Probab=30.49 E-value=1.3e+03 Score=29.70 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=84.1
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCC----hhcHHHH----HHHHHHhhcCC----CChhHHHHHhhhccCC
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGG----FDSLLEQ----MVEALCRHVSD----ESPTVRGLCLRGLVQI 1076 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~----~~~l~~~----~i~~L~~~l~D----~~~~VR~lslrGLgnl 1076 (1349)
+.+......|++..+.+|.++.+.++.+++.... .+.+.+. -+++|.+.-.. +....+.+++-=|+..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556667788899999999999999999986432 1123333 33444443222 3355677776655533
Q ss_pred ------cch-hhhhhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHHhccCCcCCcchh-----HHhHHhhhcCcCCCCCh
Q 000696 1077 ------PSI-HIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPI-----LLNLSVRLRNLQVSMNV 1143 (1349)
Q Consensus 1077 ------~~~-~v~~~~~~lL~all~~L~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~-----l~~i~~~lrpffede~~ 1143 (1349)
+.+ ++-.. +|.+++.+...++ .++-+++.+|..|...- ++...+ +..++..+.. ++
T Consensus 85 ~~~~~~a~~~~~~~~----IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~--~G~~aLl~~g~v~~L~ei~~~-----~~ 153 (543)
T PF05536_consen 85 CRDPELASSPQMVSR----IPLLLEILSSSSDLETVDDALQCLLAIASSP--EGAKALLESGAVPALCEIIPN-----QS 153 (543)
T ss_pred cCChhhhcCHHHHHH----HHHHHHHHHcCCchhHHHHHHHHHHHHHcCc--HhHHHHHhcCCHHHHHHHHHh-----Cc
Confidence 222 33333 4555555555466 89999999999998432 221111 1122222222 66
Q ss_pred HHHHHHHHHHHHhhcc
Q 000696 1144 KMRRNAFAAFGALSNF 1159 (1349)
Q Consensus 1144 ~vR~aAi~LfG~L~~~ 1159 (1349)
.....|+.++..+...
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 7788899988888763
No 223
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.70 E-value=92 Score=31.67 Aligned_cols=66 Identities=20% Similarity=0.360 Sum_probs=42.6
Q ss_pred ChhhhhhcccccchhhHHHHHHhhhcCCCchhh---hcchHHHHHHHHHhh--------hhccHHHHHHHHHHHHHH
Q 000696 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAW---HSKRPLLLEAVKSLL--------DEQNLAVQKAISELIVVM 66 (1349)
Q Consensus 1 ~fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~---~~k~~~i~~~vk~~l--------~d~~~kVr~al~~~I~am 66 (1349)
+||+.+|+.++-..+.++|.||+|++....+.. --+...+|...+.-- .+++-+||.+-=++|.++
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 489999999888999999999999998654432 123344444443322 233556666655555554
No 224
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=29.21 E-value=7.5e+02 Score=32.06 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000696 1092 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1171 (1349)
Q Consensus 1092 ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1171 (1349)
++..+-|++..|--.+..++.+++-.-+.-.-.-+--+...++-...-+....+|+.+...+.++.-.++...++.+...
T Consensus 424 lvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k 503 (678)
T KOG1293|consen 424 LVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK 503 (678)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444566777777778888887654332221112223334455566677889999999999999875555555555555
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHH
Q 000696 1172 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGS 1251 (1349)
Q Consensus 1172 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~ 1251 (1349)
+..+.+ +-..+|+++.|.+.|=.-|+.. ..+. ++...++.+++++.+..-..|
T Consensus 504 i~a~~i--~~l~nd~d~~Vqeq~fqllRNl-----------------~c~~--------~~svdfll~~~~~~ld~i~l~ 556 (678)
T KOG1293|consen 504 IPANLI--LDLINDPDWAVQEQCFQLLRNL-----------------TCNS--------RKSVDFLLEKFKDVLDKIDLQ 556 (678)
T ss_pred hhHHHH--HHHHhCCCHHHHHHHHHHHHHh-----------------hcCc--------HHHHHHHHHhhhHHHHHHHHH
Confidence 655543 3445799999999884433331 1111 134556777888777766666
Q ss_pred H
Q 000696 1252 T 1252 (1349)
Q Consensus 1252 ~ 1252 (1349)
.
T Consensus 557 l 557 (678)
T KOG1293|consen 557 L 557 (678)
T ss_pred H
Confidence 4
No 225
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=1.5e+03 Score=29.94 Aligned_cols=295 Identities=10% Similarity=0.032 Sum_probs=147.6
Q ss_pred HHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCC----cch-hhhh
Q 000696 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI----PSI-HIHQ 1083 (1349)
Q Consensus 1009 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl----~~~-~v~~ 1083 (1349)
=|+.+++|.++|++..-+.-|+-|++.+--...+. ...-++...-.+.++|.+--||.-|.-+|.-. ..| +++.
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~-~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN-GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 46788899999999999999998888872111221 22222333334444566777777776666633 334 7888
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcC--------cCCCC------ChHHHHHH
Q 000696 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN--------LQVSM------NVKMRRNA 1149 (1349)
Q Consensus 1084 ~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrp--------ffede------~~~vR~aA 1149 (1349)
|++.....+++.=.+.+.++.-+-|..+-.=.. ..++|+-.+++-+|+. +.+++ .++-.-+|
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fs----eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaa 614 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFS----EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAA 614 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhH----HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 888888888887766666665555554432221 2244555555555532 12222 22333344
Q ss_pred HHHHHHhhccC-CCcchHHHHHHHHhhhhHHHHhccCC-ChhHH-------HHHHHHHHhhhhhhhhhhhhhhccccCCC
Q 000696 1150 FAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYDD-DLSVR-------QACRNTLKQVAPFMEIGVYGIFNSHCFNS 1220 (1349)
Q Consensus 1150 i~LfG~L~~~~-~~~~~~~~~eQv~~~LvpLLlHL~D~-~~~V~-------~ack~tL~~~a~lL~~~l~~lf~~~~~~~ 1220 (1349)
..++..+.... .-.........+..++-|.+-..-++ -.++- .+|-+..+.+.+ .-|.+-+++++-. .+
T Consensus 615 sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p-imwgi~Ell~~~l-~~ 692 (970)
T COG5656 615 SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP-IMWGIFELLLNLL-ID 692 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh-hhhHHHHHHHhcc-cc
Confidence 44444433310 01112223333444555554333333 33343 345555555554 3466666666642 22
Q ss_pred CCCCCh-HHH---HHHHHHHHHHhCcc---hHHHHHHHHHHhhcCCCh--hHHHHHHHHHHhhhccCchhhhhhccHHHH
Q 000696 1221 DHRSDY-ETF---VRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWP--IIQANAIYFSSSILCLCDDQHILSLFYTQV 1291 (1349)
Q Consensus 1221 ~~~l~~-~~f---~~~l~k~L~~~~~~---~~~~~l~~~l~ylkS~~~--~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l 1291 (1349)
.....| +++ ++++..+=..++++ .......-...-+.|..- +=+..++..+-.++-++.++...+ +.+..
T Consensus 693 ~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~q-y~plf 771 (970)
T COG5656 693 EITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQ-YLPLF 771 (970)
T ss_pred cchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHh-hhHHH
Confidence 122233 333 33333333223332 222222222223334333 234557888888877777544433 33433
Q ss_pred HHHHH-HHhccCCChhHHHHH
Q 000696 1292 FGLLV-VKLSQSADAIVRATC 1311 (1349)
Q Consensus 1292 ~~~L~-~~Ll~Dpdp~VR~~A 1311 (1349)
...-. .+...|+.+.-+..|
T Consensus 772 i~vags~l~~~dElg~~sv~a 792 (970)
T COG5656 772 ISVAGSGLKMIDELGPASVYA 792 (970)
T ss_pred HHHHhhhhhccccccchhhhH
Confidence 33333 124567777555544
No 226
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.87 E-value=76 Score=24.52 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1291 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1291 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
.++.|.. |++++++.|+..|..||+.+-
T Consensus 13 ~i~~L~~-ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVE-LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHc
Confidence 4666888 677899999999999998763
No 227
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.22 E-value=9e+02 Score=28.68 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChH
Q 000696 1066 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1144 (1349)
Q Consensus 1066 R~lslrGLgnl~~~~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1144 (1349)
|.+..+.|..++... ..+.++..+...+.. .+|.....++.+|..=+..++ ..+.. .+...+..-|.|.++.
T Consensus 4 r~~~~~~L~~l~~~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~---~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 4 RVLHASMLSSLPSSS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPK---KVVDAFKKGLKDKKPP 76 (339)
T ss_pred HHHHHHHHHhCCCcc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCH---HHHHHHHHHhcCCCCc
Confidence 334444444444311 345555555555554 456666667777777776662 22222 2223334567777777
Q ss_pred HHHHHHHHHHHhhc
Q 000696 1145 MRRNAFAAFGALSN 1158 (1349)
Q Consensus 1145 vR~aAi~LfG~L~~ 1158 (1349)
+|..=+..+|+...
T Consensus 77 vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 77 VRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 228
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.18 E-value=4.2e+02 Score=27.72 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccC-CChhH
Q 000696 1229 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIV 1307 (1349)
Q Consensus 1229 f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-pdp~V 1307 (1349)
..-++|-.+-.. ++....-+.....-++++.+++-.-|..++..++++.+.....++......+.|.. +..+ .++.|
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k-l~~~~~~~~V 97 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK-LINDRVHPTV 97 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HhcccCCHHH
Confidence 334777776655 66666677777778889999999999999999999999777777777888888999 7777 78899
Q ss_pred HHHHHHHHHH
Q 000696 1308 RATCSSSLGW 1317 (1349)
Q Consensus 1308 R~~Aa~aL~~ 1317 (1349)
+.++.+-+..
T Consensus 98 k~kil~li~~ 107 (144)
T cd03568 98 KEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHH
Confidence 9887766544
No 229
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=26.81 E-value=4e+02 Score=29.98 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred cCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCC-----CChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000696 1097 DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1171 (1349)
Q Consensus 1097 ~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed-----e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1171 (1349)
++....-+..|+..|..+..+-+.+.+ -+--++..-|.||..- .-+-+|.+|....|+|.+.+ ..+..+--
T Consensus 110 ~~~~snRvcnaL~lLQclaShPetk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---sq~vi~fL 185 (315)
T COG5209 110 DERESNRVCNALNLLQCLASHPETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---SQYVIKFL 185 (315)
T ss_pred CchhhhHHHHHHHHHHHHhcCcchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---CHHHHHHH
Confidence 333455777888888887766443221 1111222233455542 22569999999999999843 23333333
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCCh-----------HHHHHHHHHHHHHh
Q 000696 1172 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY-----------ETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1172 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~-----------~~f~~~l~k~L~~~ 1240 (1349)
.-.-+|||.+...|...+..+-- |.+....++ ++|.+++| ...++++..+++..
T Consensus 186 ltTeivPLcLrIme~gSElSktv--aifI~qkil-------------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~ 250 (315)
T COG5209 186 LTTEIVPLCLRIMELGSELSKTV--AIFIFQKIL-------------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL 250 (315)
T ss_pred HhhhHHHHHHHHHHhhhHHHHHH--HHHHHHHHh-------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44679999999999877655432 122222222 33344433 23446666677776
Q ss_pred CcchHHHHHHHHHH-hhc-CCChhHHH
Q 000696 1241 FPSRIDSYMGSTIQ-AFE-APWPIIQA 1265 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~-ylk-S~~~~IR~ 1265 (1349)
.+.++- ..++. |++ |..+++|+
T Consensus 251 ~~~RLl---Kh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 251 GSTRLL---KHAIRCYLRLSDKPHARA 274 (315)
T ss_pred cchhHH---HHHHHHheeecCCHhHHH
Confidence 666643 33343 444 44566666
No 230
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=26.75 E-value=5.5e+02 Score=34.66 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=97.5
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhh-hhhhhhhhhhccccC
Q 000696 1140 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEIGVYGIFNSHCF 1218 (1349)
Q Consensus 1140 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~-lL~~~l~~lf~~~~~ 1218 (1349)
|+.+.||..|...|.++.....+...+. |+. .++---.|+--.|+++.-.++-+-.. +-.- -++-.|
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~s----Il~---~~inS~~d~~fs~ves~~~~~~~~~~~~s~~-----~~tt~~ 550 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFS----ILC---ATINSEMDEKFSAVESLEDLNVSGKAPSSKT-----KKTTDL 550 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHH----HHH---HhcCCccccchhHHHhchhhhhcccCccccc-----ccchhh
Confidence 6678999999999999998655433222 222 22233456666777766655543211 1111 001011
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhc-CCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHH
Q 000696 1219 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1296 (1349)
Q Consensus 1219 ~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~-ylk-S~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~ 1296 (1349)
- .+-++..-++---++.+.-.++...+..-+. ... +.-.++|.+|...+-....+-+..-. .|.+.--|+
T Consensus 551 l----~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~----fe~~L~iLq 622 (1529)
T KOG0413|consen 551 L----LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK----FEVVLSILQ 622 (1529)
T ss_pred c----CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc----chhHHHHHH
Confidence 1 1123344454445566666666665554443 444 56677999999887777766653333 255577788
Q ss_pred HHhccCCChhHHHHHHHHHHHHH
Q 000696 1297 VKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1297 ~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+ |=+||-..||..++++|+.+.
T Consensus 623 ~-lCrd~~vsvrk~~~~Sltel~ 644 (1529)
T KOG0413|consen 623 M-LCRDRMVSVRKTGADSLTELM 644 (1529)
T ss_pred H-HhcCcchHHHHHHHHHHHHHH
Confidence 8 789999999999999999876
No 231
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.59 E-value=2.2e+02 Score=34.73 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCC----ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHH-HHHHHhhhcCCChhcHHHH--HHHH
Q 000696 981 EQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQ--MVEA 1053 (1349)
Q Consensus 981 ~W~----~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sELl~~~~~~~~l~~~--~i~~ 1053 (1349)
.|. ++..|.+-+..+-. -.-+|+..|+.+|++.+++.-+..+ -=++|++++.+....+++. .-..
T Consensus 342 ~WSP~Hk~e~FW~eNa~rlne--------nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~ 413 (442)
T KOG2759|consen 342 EWSPVHKSEKFWRENADRLNE--------NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER 413 (442)
T ss_pred CCCccccccchHHHhHHHHhh--------ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH
Confidence 687 66777777654332 3557888888999988877655444 4478999864332222221 1223
Q ss_pred HHhhcCCCChhHHHHHhh
Q 000696 1054 LCRHVSDESPTVRGLCLR 1071 (1349)
Q Consensus 1054 L~~~l~D~~~~VR~lslr 1071 (1349)
+.+-++++||.||-=||.
T Consensus 414 vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 414 VMNLLNHEDPEVRYHALL 431 (442)
T ss_pred HHHHhcCCCchHHHHHHH
Confidence 333345555555544443
No 232
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.41 E-value=1.3e+03 Score=28.49 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000696 1227 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1305 (1349)
Q Consensus 1227 ~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~-~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1305 (1349)
+.|+++=...|-+++- ..+...+.+++++. |.+=+-|+.=||..+.++|.-.. -++.-..-.++.+ |..-+||
T Consensus 350 e~FW~eNa~rlnenny----ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~-Llnh~d~ 423 (442)
T KOG2759|consen 350 EKFWRENADRLNENNY----ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMN-LLNHEDP 423 (442)
T ss_pred cchHHHhHHHHhhccH----HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHH-HhcCCCc
Confidence 4566665555555443 35666777888887 66778888889999999993221 1222334455666 7889999
Q ss_pred hHHHHHHHHHHHHHH
Q 000696 1306 IVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1306 ~VR~~Aa~aL~~l~k 1320 (1349)
.||--|-.|...+--
T Consensus 424 ~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 424 EVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999777653
No 233
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=26.35 E-value=1.8e+03 Score=30.03 Aligned_cols=273 Identities=15% Similarity=0.154 Sum_probs=145.0
Q ss_pred HHHHHHHhhhcCCChhcHHHHHHHH-HHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhHHHH
Q 000696 1029 AAAALSEFVRYSGGFDSLLEQMVEA-LCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLT 1106 (1349)
Q Consensus 1029 a~af~sELl~~~~~~~~l~~~~i~~-L~~~l~D~~~~VR~lslrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V~le 1106 (1349)
|..|++.+..+-.....+....++. +.....|..+-+|.-++|.+...... -.....|.+|+.++...-+..+.|-.-
T Consensus 470 a~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~l 549 (1005)
T KOG2274|consen 470 AFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVL 549 (1005)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHH
Confidence 3344444444433333444444444 44455788899999999966655433 234567888898888888877887777
Q ss_pred HHHHHHHHhccCCcCCcchhHHhHHhhhcCcCC--CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc
Q 000696 1107 AVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1184 (1349)
Q Consensus 1107 Am~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe--de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1184 (1349)
-|.+|+-+... +.+...+.--.|+..+-..|- .+.+.|-.-|=.+|-+++.. ..+..++.+-..-++|+.+--=.
T Consensus 550 lmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 550 LMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCcc
Confidence 78888877653 222211111111111111222 34567888888999999972 33555666665555555433222
Q ss_pred CCChhHHHHHHHHHHhhhhhhhh---hhh---------hhhccccCCCCC--CCC-hHHHHHHHHH----HHHHh--Ccc
Q 000696 1185 DDDLSVRQACRNTLKQVAPFMEI---GVY---------GIFNSHCFNSDH--RSD-YETFVRDLTR----QFVQH--FPS 1243 (1349)
Q Consensus 1185 D~~~~V~~ack~tL~~~a~lL~~---~l~---------~lf~~~~~~~~~--~l~-~~~f~~~l~k----~L~~~--~~~ 1243 (1349)
|..+ ..-|..++--+..+++- ++. ++.+-- ++.|+ .+. -+|.++.+.. .+.+. .|+
T Consensus 627 ~~~~--~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 627 DKAP--AGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT-LHSDDHETLQNATECLRALISVTLEQLLTWHDEPG 703 (1005)
T ss_pred cccC--chhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCC
Confidence 2333 45566665555544443 222 222211 22221 111 1222222211 12222 355
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhcc--HHHHHHHHHHHhccCCChhHHH
Q 000696 1244 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF--YTQVFGLLVVKLSQSADAIVRA 1309 (1349)
Q Consensus 1244 ~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~--~e~l~~~L~~~Ll~Dpdp~VR~ 1309 (1349)
.--||+++.+.-+=+|.. -..|+.|+|-++..+-...-++++ .+++..|...+|++-+.+.|-.
T Consensus 704 ~~~~yImqV~sqLLdp~~--sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQ 769 (1005)
T KOG2274|consen 704 HNLWYIMQVLSQLLDPET--SDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQ 769 (1005)
T ss_pred ccHHHHHHHHHHHcCCcc--chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 557899999998887765 344566999766544322222222 2445555444455555554443
No 234
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.25 E-value=1.4e+02 Score=30.64 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=51.8
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCCchhhh---cchHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhh
Q 000696 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLD---EQNLAVQKAISELIVVMAS 68 (1349)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~vk~~l~---d~~~kVr~al~~~I~ama~ 68 (1349)
|..+|..++.....-||.+|-.++..+++.+. ..+.++.+ +..++. ..+..||+-++++|...+.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999988654 23455666 445553 4688999999999998875
No 235
>PF14961 BROMI: Broad-minded protein
Probab=26.09 E-value=3e+02 Score=37.97 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=115.6
Q ss_pred HHHHhhcCCC-ChhHHHHHhhhccCCcchhh--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000696 1052 EALCRHVSDE-SPTVRGLCLRGLVQIPSIHI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1128 (1349)
Q Consensus 1052 ~~L~~~l~D~-~~~VR~lslrGLgnl~~~~v--~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1128 (1349)
+.+.+.+.-. --.||.-|++-|-.+..+++ ...-+.+-..+..+|.|.|+.+...+++-..+.+...+-....-+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 4555555433 45789999999998887644 45567888899999999999999999999999999876665566777
Q ss_pred hHHhhhcCcCCCCChHHH---------------HH-HHHHHHHhhc----cCCCcchHHHHHHHH-hhhhHHHHhccCCC
Q 000696 1129 NLSVRLRNLQVSMNVKMR---------------RN-AFAAFGALSN----FGVGSQREAFLEQIH-AMLPRLILHIYDDD 1187 (1349)
Q Consensus 1129 ~i~~~lrpffede~~~vR---------------~a-Ai~LfG~L~~----~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~ 1187 (1349)
+++..+-..|-..+..+. .. .|+|.-+.-+ +..+ ..+.+.|.|. +.+.=|-.|... +
T Consensus 244 sL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiR-hpeK~mEeIVEsTLsLLs~~~~~-~ 321 (1296)
T PF14961_consen 244 SLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIR-HPEKYMEEIVESTLSLLSTHHDQ-N 321 (1296)
T ss_pred HHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhc-CcHHHHHHHHHHHHHHhcccccC-C
Confidence 887777555533322222 10 1233222211 1111 2233445544 444444455443 3
Q ss_pred hhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000696 1188 LSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1260 (1349)
Q Consensus 1188 ~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1260 (1349)
.-+..++=..+ .++.- +.++.+-+. |-.|. .-+ ..+.+.|..+++..+..-+.||+.|+.+..
T Consensus 322 ~~~s~k~L~pi----~~lslLD~kA~WFkK-WmHg~--ySR---~vvlr~L~kky~sli~~av~qCi~y~~~~~ 385 (1296)
T PF14961_consen 322 SLGSPKTLTPI----HFLSLLDPKAVWFKK-WMHGY--YSR---TVVLRLLEKKYKSLIVNAVQQCIQYVESCE 385 (1296)
T ss_pred Ccccccccchh----hhhhhhccchHHHHH-HHhhc--chH---HHHHHHHccccchHHHHHHHHHHHHHHHhh
Confidence 22222221111 33333 443333332 54431 112 123456777888888899999999988654
No 236
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.08 E-value=5.9e+02 Score=27.69 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 000696 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1349)
Q Consensus 1050 ~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~ 1117 (1349)
+...+.+|.+++|+-+|+.++-++-..... .+.+.++..+...+.|.+.-|.+..-..|+.+...
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999888654433 55677888888888887777888877788877654
No 237
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.03 E-value=1.2e+02 Score=31.58 Aligned_cols=65 Identities=17% Similarity=0.361 Sum_probs=52.3
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhh
Q 000696 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLAVQKAISELIVVMAS 68 (1349)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~d-~~~kVr~al~~~I~ama~ 68 (1349)
+..||.++|.+.-.-||.+|-.++..++..+.. .+.++ ..++.++.+ ...+||.-++++|.+.+.
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl-~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFT-QELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH-HHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999986652 34444 456666665 888999999999999873
No 238
>PRK09169 hypothetical protein; Validated
Probab=25.64 E-value=2.6e+03 Score=31.74 Aligned_cols=238 Identities=17% Similarity=0.124 Sum_probs=137.2
Q ss_pred ChHHHHHHHHH-------HHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHhhh-------cCchhHHHHHHHHhh
Q 000696 951 EPLRAILTSFQ-------AFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSI-------KRPKEVQTICLILTK 1016 (1349)
Q Consensus 951 ~P~~~aleAlk-------~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~-------~~~~~~~~i~~~L~~ 1016 (1349)
..|+.+.+++- .++....-+++.+.+.--..|-+....-.....||..++. .+++.+.++++-|.+
T Consensus 515 ~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSK 594 (2316)
T PRK09169 515 DACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSK 594 (2316)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhh
Confidence 45666766662 3555566667777776666787544555556667766544 355678888888888
Q ss_pred hhcccCccchHHHHHHHHHhhhcCCChh----cHHHHHHHHHHhhcCCCChhHHHHHhhhccC-Ccch--hhhhhHHHHH
Q 000696 1017 SINRQQRFQREAAAAALSEFVRYSGGFD----SLLEQMVEALCRHVSDESPTVRGLCLRGLVQ-IPSI--HIHQYATQVL 1089 (1349)
Q Consensus 1017 ~L~s~~~~~Ri~a~af~sELl~~~~~~~----~l~~~~i~~L~~~l~D~~~~VR~lslrGLgn-l~~~--~v~~~~~~lL 1089 (1349)
.-. ....|-++.+....+...+.... .-+-++++.|.+|= +......+...|.. ++.+ ....+.++-|
T Consensus 595 WP~--~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP---~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~L 669 (2316)
T PRK09169 595 WPD--EDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWP---DEDDCRQAAEALAARLLRDAGLPRAFDAQGL 669 (2316)
T ss_pred CCC--chhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHhhcchhHHhcCcHHH
Confidence 733 34556677777777777653311 11234667777774 22333333333332 1111 1222333334
Q ss_pred HHHHhhccC-CChhHHHHHHHHHHHH-------hccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCC
Q 000696 1090 SVILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1161 (1349)
Q Consensus 1090 ~all~~L~d-~d~~V~leAm~~L~~l-------L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1161 (1349)
.-++.+|.. .+++.-.+|...|..- .+.++.+++...+-.+ --+.+. +.=|.++-.+.|.|.. +
T Consensus 670 aN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAl----sKwp~~--~acr~A~~~LA~rL~~--~ 741 (2316)
T PRK09169 670 ANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNAL----SKWPEE--EACRAAAEALAGRLAA--D 741 (2316)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHH----HhccCc--cHHHHHHHHHHHHHhc--C
Confidence 444455444 2455666666666433 3444444444443333 223333 4688999999999997 2
Q ss_pred CcchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh
Q 000696 1162 GSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1207 (1349)
Q Consensus 1162 ~~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1207 (1349)
......|..| |-++|-.|=-..+++ +|+.++-.++..+|.
T Consensus 742 ~~l~~a~~aQ~lAnsLNaLsKwp~~~------~c~~a~~~La~~lg~ 782 (2316)
T PRK09169 742 ADLRQAMNPQGLANSLNALSKWPQEP------ACQQAALLLAERLGS 782 (2316)
T ss_pred hHHHhhcCHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcc
Confidence 3345567655 667777766665544 788888888888777
No 239
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.59 E-value=1e+03 Score=26.87 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=109.1
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHh----hcC
Q 000696 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCR----HVS 1059 (1349)
Q Consensus 984 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~----~l~ 1059 (1349)
+++....-+..|+.-.+..+ ...+.+++.+.+..+.+...-+-++.-.++++.+.....-..++.++..+.. ...
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 45555556666666555554 6788888888888777766667788888888877643321223333322111 122
Q ss_pred CCChhHHH-----HHhhhccCCcchhhhhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhh
Q 000696 1060 DESPTVRG-----LCLRGLVQIPSIHIHQYATQVLSVILALL-DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR 1133 (1349)
Q Consensus 1060 D~~~~VR~-----lslrGLgnl~~~~v~~~~~~lL~all~~L-~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~ 1133 (1349)
+.+...+. .+++-+-..-+ .+...+++.+...| ++.++.+..-|+.+|+-+.+. +--++.+...-+..+
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p----~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~-~vvd~~s~w~vl~~~ 167 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRP----DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA-EVVDFYSAWKVLQKK 167 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCh----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHh
Confidence 22222211 12222111111 26677888888888 777788888888888888843 222333444344333
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhhccC-CCcchHHHHHHHHhhhhHHHHhccC
Q 000696 1134 LRNLQVSMNVKMRRNAFAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYD 1185 (1349)
Q Consensus 1134 lrpffede~~~vR~aAi~LfG~L~~~~-~~~~~~~~~eQv~~~LvpLLlHL~D 1185 (1349)
+ =.+.++.|=.+--++|+-+.... +....+.+..+++..+=-...|.++
T Consensus 168 l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 168 L---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred c---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 3 23445555554556777665532 2334556777777766666666554
No 240
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=3.3e+02 Score=35.83 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Q 000696 1260 WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSA-DAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1260 ~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dp-dp~VR~~Aa~aL~~l~k 1320 (1349)
...||+--||++|.-+.---..+ -.--++.++.+ |++|. |-.||-.|++|+.....
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e----~k~l~Y~a~ln-LL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLE----LKPLLYCAFLN-LLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHh----HHHHHHHHHHH-hcCccccceeehHHHHHHHHhhh
Confidence 45689999999998766221111 12558899999 89998 99999999999988763
No 241
>PF14750 INTS2: Integrator complex subunit 2
Probab=25.04 E-value=2e+03 Score=30.32 Aligned_cols=121 Identities=14% Similarity=0.059 Sum_probs=70.8
Q ss_pred ChHHHHHH-HHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh----------------hhh
Q 000696 1142 NVKMRRNA-FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV----------------APF 1204 (1349)
Q Consensus 1142 ~~~vR~aA-i~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~----------------a~l 1204 (1349)
..-++++| +++|..|-..++-+. ..+=...+..|+-+--++.|.-.+=-..+|+.. ...
T Consensus 325 ~~~~~~~allrlyCaL~g~~g~k~----~~eE~~~lL~lit~~p~~~~~g~rf~~l~l~~Llacp~l~~~~~~e~~~v~W 400 (1049)
T PF14750_consen 325 EHIVQASALLRLYCALRGIAGLKF----TPEESEALLQLITSSPPPTPAGIRFVSLALCMLLACPSLISTPEQENSVVRW 400 (1049)
T ss_pred chHHHHHHHHHHHHHHHhhhcCCc----CHHHHHHHHHHHccCCCCCccchhHHHHHHHHHHHhHHhccCccHHHHHHHH
Confidence 33455555 688888877554332 222234455555555444444332222222221 122
Q ss_pred hhhh--hhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHh
Q 000696 1205 MEIG--VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSS 1273 (1349)
Q Consensus 1205 L~~~--l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~ 1273 (1349)
++|- -.+.|... .+...+|+|++-=++-+|..+-++.+..++..++++ | ..||.+....++.
T Consensus 401 l~~Lik~~a~~~~~---~~~~~s~~E~LLLiaI~fhs~Q~~~I~~Lv~~tLgm-k---i~i~~~sl~rlk~ 464 (1049)
T PF14750_consen 401 LQWLIKEEAYFESG---SGVSASFGEMLLLIAIHFHSNQLSAIAELVCSTLGM-K---IPIRPNSLSRLKQ 464 (1049)
T ss_pred HHHHHHhhhhhccc---ccCCccHHHHHHHHHHHHHhccHHHHHHHHHhhcCC-e---eeechHHHHHHHH
Confidence 3341 12344442 235668999999999999999999999999999984 3 3466666655553
No 242
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.39 E-value=1.5e+02 Score=30.83 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=51.5
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhh
Q 000696 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-DEQNLAVQKAISELIVVMAS 68 (1349)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l-~d~~~kVr~al~~~I~ama~ 68 (1349)
+..||..+|.+.-.-||.+|-.++..++..+.. .+.++- .++.++ ..+..+||+-++++|.+.+.
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~-~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD-ELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH-HHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998876542 344444 444555 57788999999999998874
No 243
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=5.4e+02 Score=34.28 Aligned_cols=190 Identities=16% Similarity=0.124 Sum_probs=110.3
Q ss_pred HHHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcchhHHh-HHhhhcCcCCC-CChHHHHHHHHHHHHhhccCCCcch
Q 000696 1089 LSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLN-LSVRLRNLQVS-MNVKMRRNAFAAFGALSNFGVGSQR 1165 (1349)
Q Consensus 1089 L~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~-i~~~lrpffed-e~~~vR~aAi~LfG~L~~~~~~~~~ 1165 (1349)
+..++.||... |+...++|+.-|...|--..+..++.|-++ +...|-.+..+ -+.++-.-|.+.+-.|..+...+..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34567788876 788999999999999876666655533222 12222223333 3588999999999999887665554
Q ss_pred HHHHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000696 1166 EAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1244 (1349)
Q Consensus 1166 ~~~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~ 1244 (1349)
....+++ ++-|+-.|+- ++.+|++.|=.||..+..-=. ++.++ .|
T Consensus 249 ~vV~~~a---IPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~-----AG----------------------- 294 (1051)
T KOG0168|consen 249 IVVDEHA---IPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQ-----AG----------------------- 294 (1051)
T ss_pred eeecccc---hHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHh-----cc-----------------------
Confidence 4444443 3333333333 488999999999988764200 11111 11
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000696 1245 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1318 (1349)
Q Consensus 1245 ~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1318 (1349)
-++.++.||.==.-.+.++|.-.+....+.++++....+ -+....|-. |++-.|.-+=..+...+.++
T Consensus 295 ---~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~-lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 295 ---ALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTP-LLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHH-HHhhccchhHHHHHHHHHHH
Confidence 022223333222345677777777777777776665433 445555666 45545554444444444443
No 244
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.03 E-value=1.5e+03 Score=28.34 Aligned_cols=130 Identities=13% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCc-HHHHHHHHHHH---HHHhhccCchhHHHHHHhhhcccch
Q 000696 759 AEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITD-KHLRLETLGAI---SCLAENTNSKIVFNEVLATAGKDIV 834 (1349)
Q Consensus 759 ~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~-~~~r~~~l~ai---~~La~~h~~~vV~~~ll~~~~~~~~ 834 (1349)
....-+++..++|....-+.|.+|..+++.++.- +..+. +.--...+..+ ..-+.=+ .+.. ..++.++.+-
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i-C~~Ts~~~di~~~L~vldaii~y~~iP-~~sl-~~~i~vLCsi-- 225 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI-CKSTSSEDDIEACLSVLDAIITYGDIP-SESL-SPCIEVLCSI-- 225 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHcCcCC-hHHH-HHHHHHHhhH--
Confidence 3445567778888888888666677777777663 43332 22223333333 3333222 2211 2222222111
Q ss_pred hhhhccccCCCCchh-HHHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHH
Q 000696 835 TKDISRLRGGWPMQD-AFHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAF 911 (1349)
Q Consensus 835 ~~~~~~L~~~lP~d~-~W~al~~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~El 911 (1349)
-....+.. .|+++.+ .......++..|.+.|.+..+... ...-.--.|+.-+..+
T Consensus 226 -------~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~---------------~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 226 -------VNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNK---------------RDINVLRGAVFFLRML 283 (464)
T ss_pred -------hcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcccc---------------ccHHHHhhHHHHHHHH
Confidence 00112222 7999876 566778888999998832221110 0011223788888888
Q ss_pred HhcC
Q 000696 912 FRGG 915 (1349)
Q Consensus 912 l~~~ 915 (1349)
+.+.
T Consensus 284 l~~~ 287 (464)
T PF11864_consen 284 LWGS 287 (464)
T ss_pred Hhcc
Confidence 8876
No 245
>PRK14707 hypothetical protein; Provisional
Probab=23.40 E-value=2.8e+03 Score=31.34 Aligned_cols=336 Identities=13% Similarity=0.033 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHhhhc-------CchhHHHHHHHHhhh
Q 000696 952 PLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKS 1017 (1349)
Q Consensus 952 P~~~aleAlk~ll-------~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~~~ 1017 (1349)
.|+.+..+|=.-+ ....-+++.+.|.--..|-+.+.--.++..||..++.. +++++...++-|.+-
T Consensus 894 ~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKW 973 (2710)
T PRK14707 894 VCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKW 973 (2710)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccC
Confidence 4766666654322 33344555666666667998788888899999988642 445677777777766
Q ss_pred hcccCccchHHHHHHHHHhhhcCCChhcH----HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHHH
Q 000696 1018 INRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSV 1091 (1349)
Q Consensus 1018 L~s~~~~~Ri~a~af~sELl~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~v~~~~~~lL~a 1091 (1349)
- ..+..+.+|.+.-.+|.+.+.....+ +-.++|.|.+|-.-+ .=|..+.+=-+.++.+ ..+..-.+-+..
T Consensus 974 P--d~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~--~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan 1049 (2710)
T PRK14707 974 P--DVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMP--VCAATVEALAARLSNDPGLCKALSSQGLTT 1049 (2710)
T ss_pred C--CchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCch--HHHHHHHHHHHHhccCHhhhhhcchHHHHH
Confidence 2 23344666666666665554332222 233677777776322 3333333322233322 222333455666
Q ss_pred HHhhccC-CChhHHHHHHHHHHHHh-------ccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1092 ILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1092 ll~~L~d-~d~~V~leAm~~L~~lL-------~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
.+++|.. .+++.--.|...|..-| ..++.+++.+.+-.++. . -+.+.-|.+|..+=+.|+. .+.
T Consensus 1050 ~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSK--W----P~~~~Cr~Aa~~LA~rL~~--~~~ 1121 (2710)
T PRK14707 1050 VLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSK--W----PDSPVCAAAASALAKRLTD--DAG 1121 (2710)
T ss_pred HHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhc--C----CCcHHHHHHHHHHHHHhcc--ccc
Confidence 7777766 34444444444444322 23455555544433322 1 2457788888888888865 222
Q ss_pred chHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000696 1164 QREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1240 (1349)
Q Consensus 1164 ~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~ 1240 (1349)
....|.-| |-+.+.-|- -.-++ ..|+.|-..+|.-|-+ .+..-+.-
T Consensus 1122 l~~~fd~q~vA~~LNALS-KWp~~-----~~cr~Aa~~LA~RL~~d~~Lr~a~~~------------------------- 1170 (2710)
T PRK14707 1122 LRHVFDPINVSQALNALS-KWPGT-----QACESAIDVLAATLANAPGLRNALSA------------------------- 1170 (2710)
T ss_pred hhccCCHHHHHHHHHHHh-cCCCc-----hHHHHHHHHHHHHhccchhhhhhcCH-------------------------
Confidence 33344433 223222222 22222 2455555554443322 32222111
Q ss_pred CcchHHHHHHHHHH-hhcCCChh-HHHHHHHHHHhhhc-cCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000696 1241 FPSRIDSYMGSTIQ-AFEAPWPI-IQANAIYFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1317 (1349)
Q Consensus 1241 ~~~~~~~~l~~~l~-ylkS~~~~-IR~~A~~fiG~l~~-~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1317 (1349)
.. +.++++ +.|=|..+ -|+++..+++.+.. ..+-......+.-++-+++-. +..+.+...-..++-+...
T Consensus 1171 --Q~----vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR-l~~~~~ed~~~~~~~a~~~ 1243 (2710)
T PRK14707 1171 --QG----VAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR-LSPLDEEDDEQFRTLAVAK 1243 (2710)
T ss_pred --HH----HHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHH
Confidence 11 112222 44445443 56666666666655 233344455667889999998 6654444444444666678
Q ss_pred HHHhcccccccccccccccc
Q 000696 1318 LLKSINSHSWRSTRLERVES 1337 (1349)
Q Consensus 1318 l~k~~~~~~~~~~~~~~~~~ 1337 (1349)
|++-+.+.--+-.+|+.+|.
T Consensus 1244 L~~LA~HL~l~~erfe~A~~ 1263 (2710)
T PRK14707 1244 LQAMAGHLDLHRELFASASV 1263 (2710)
T ss_pred HHHHHHHHhhcHHHHhhccc
Confidence 99988777766666666553
No 246
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.28 E-value=1.9e+03 Score=29.23 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=141.9
Q ss_pred ChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCC-----ChhhHHHHHH-------HHHHHhhhcCc---hhHHHHHHHHh
Q 000696 951 EPLRAILTSFQAFCECVGDLEMRKILARDGEQN-----DKEKWINLIG-------DVAGCVSIKRP---KEVQTICLILT 1015 (1349)
Q Consensus 951 ~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~-----~~e~~~~gV~-------lLAr~m~~~~~---~~~~~i~~~L~ 1015 (1349)
.|+...+.+|+.||++.|.. -|. ++....+.|- .|.++-..... ..++.++.-+.
T Consensus 229 ~~l~~lL~~l~~lL~k~~~~----------FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~ 298 (727)
T PF12726_consen 229 PPLPILLRCLSILLEKLGSD----------FWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWIS 298 (727)
T ss_pred hhHHHHHHHHHHHHHhCHHH----------HhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHH
Confidence 36678999999999887752 133 2232322221 12221111100 11667778888
Q ss_pred hhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhc-CCCChh-HHHHHhhhccCCcchhhhhhHHHHHHHHH
Q 000696 1016 KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPT-VRGLCLRGLVQIPSIHIHQYATQVLSVIL 1093 (1349)
Q Consensus 1016 ~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l-~D~~~~-VR~lslrGLgnl~~~~v~~~~~~lL~all 1093 (1349)
|+++|-...+|.-++..++. .|.+.+ +++.+. .|..|++.. ...++.++.
T Consensus 299 pf~~SL~~~~~~~~~~~l~~-----------------~Ll~~~q~~~~~~~~r~~c~~~~-----------~~~L~~~l~ 350 (727)
T PF12726_consen 299 PFLRSLSPSQRSQACRKLLH-----------------FLLERLQHDRFPDEARAACLRAG-----------LDALLSTLR 350 (727)
T ss_pred HHHHHhcccchhhHHHHHHH-----------------HHHHHHhccccchhHHHHHHHHH-----------HHHHHHHHH
Confidence 88888777777665544443 444433 334444 777777721 122333333
Q ss_pred hhccCCC--hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhcc------------
Q 000696 1094 ALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF------------ 1159 (1349)
Q Consensus 1094 ~~L~d~d--~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~------------ 1159 (1349)
.-.++.. ..+..-++.....++..-- +...... -...+-.+.....+..+|+.++.+..++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~a~~vi~~~l~~D~~~l~~~~~~l 425 (727)
T PF12726_consen 351 SFNDNERSDFSTALITINDTRNLVSNYI---IRDAIIP--AAKFKIEGWSNSSVSNSAMKVIRNALALDILSLCEESQAL 425 (727)
T ss_pred hcccccccccchhHhhHHHHHHHHHhhh---hhhhccC--hhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222211 1233333333333322211 0000000 0001112345677888887777766653
Q ss_pred -CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCCCCCCh----HHHHHHHH
Q 000696 1160 -GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY----ETFVRDLT 1234 (1349)
Q Consensus 1160 -~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~----~~f~~~l~ 1234 (1349)
.+..........--..+-.+..|+..+++..+++-=.++..+..+..-..+. .+..+.. ...+| +.+..-++
T Consensus 426 ~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~-~~~~~N~~~~~~~~~~~ 502 (727)
T PF12726_consen 426 LRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDP-AKTQFNKSLGQITDLIS 502 (727)
T ss_pred hcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcch-HHHHHHHHHHHHHHHHH
Confidence 1111111112222234455677777788886666555555555544441111 1111111 11112 22322222
Q ss_pred HH---HHHhCcchHHHHHH------HHHHhhcCCChhHHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000696 1235 RQ---FVQHFPSRIDSYMG------STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1305 (1349)
Q Consensus 1235 k~---L~~~~~~~~~~~l~------~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1305 (1349)
+. +..-.|+.+..++. ..+..+=||..+++.+|.-+++....- +.-.+++++++...|++
T Consensus 503 ~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~-----------~~R~e~i~~ll~~~~~~ 571 (727)
T PF12726_consen 503 QILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV-----------DGRLEAIQALLQSNFSP 571 (727)
T ss_pred HHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHhHHH
Confidence 22 22334555555444 233455688889999999888866532 22233455544455666
Q ss_pred hHHHH
Q 000696 1306 IVRAT 1310 (1349)
Q Consensus 1306 ~VR~~ 1310 (1349)
.++..
T Consensus 572 tL~ai 576 (727)
T PF12726_consen 572 TLSAI 576 (727)
T ss_pred HHHHH
Confidence 66654
No 247
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=6.3e+02 Score=33.72 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=115.0
Q ss_pred hhcc-cCccchHHHHHHHHHhhhcCC---ChhcHHHHHHHHHHhhcCCC-ChhHHHHHhhhccCCcch-------hhhhh
Q 000696 1017 SINR-QQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-------HIHQY 1084 (1349)
Q Consensus 1017 ~L~s-~~~~~Ri~a~af~sELl~~~~---~~~~l~~~~i~~L~~~l~D~-~~~VR~lslrGLgnl~~~-------~v~~~ 1084 (1349)
.|+. .++.+.+-|..=+.|.|--.. ......+.++-+|..-++++ |+.+-.+|+|+|.+|-.. -|+.
T Consensus 175 gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~- 253 (1051)
T KOG0168|consen 175 GLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE- 253 (1051)
T ss_pred hccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-
Confidence 3444 377788888877888776421 23455688888888888886 899999999999987421 1221
Q ss_pred HHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCc
Q 000696 1085 ATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1163 (1349)
Q Consensus 1085 ~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1163 (1349)
-.+|+++.-|.--. -+|+-.++.+|-+|-+.=+..-+.+--+..+..-..|| +-.+...|+..-.+.++.-..
T Consensus 254 --~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~s- 327 (1051)
T KOG0168|consen 254 --HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRS- 327 (1051)
T ss_pred --cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC-
Confidence 24666666665422 35888888888888665443333333344444444566 568888999988888875433
Q ss_pred chHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhh-hhhhh--hhhhhhcc
Q 000696 1164 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-PFMEI--GVYGIFNS 1215 (1349)
Q Consensus 1164 ~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-~lL~~--~l~~lf~~ 1215 (1349)
+...|.-.++-.|-|||- -.+..+..-.-.+|.+++ .+..- ++.+++..
T Consensus 328 d~f~~v~ealPlL~~lLs---~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLS---YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred ccchHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 333344444444445444 344455554445555554 34433 55555543
No 248
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=1.4e+03 Score=27.55 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=86.9
Q ss_pred cCCC-CChHHHHHHHH---HHHHhhccCCCcchHH-HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhhhhhhh-hhh
Q 000696 1137 LQVS-MNVKMRRNAFA---AFGALSNFGVGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVY 1210 (1349)
Q Consensus 1137 ffed-e~~~vR~aAi~---LfG~L~~~~~~~~~~~-~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~ 1210 (1349)
+.+| ...++|..+-. ++.+|+. ..+-|.. .+.+....++.|++.-.| +|.|.++.-.+++.++ |+. +=.
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG--~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~--LR~pdhs 365 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAG--SDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILC--LRSPDHS 365 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhC--CCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHH--hcCcchH
Confidence 4556 45678866654 4555543 2233333 445677888888887666 6677766544444333 222 111
Q ss_pred hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhccCchhh--hhhccH
Q 000696 1211 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQH--ILSLFY 1288 (1349)
Q Consensus 1211 ~lf~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~~A~~fiG~l~~~~~~~~--~~~~~~ 1288 (1349)
+-+- +.| ..++.-.-|+.||-+ ..+.++|++.|-.++-....+. +...+.
T Consensus 366 a~~i----e~G--------~a~~avqAmkahP~~----------------a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi 417 (461)
T KOG4199|consen 366 AKAI----EAG--------AADLAVQAMKAHPVA----------------AQVQRNACNMIRNIVVRSAENRTILLANGI 417 (461)
T ss_pred HHHH----hcc--------hHHHHHHHHHhCcHH----------------HHHHHHHHHHHHHHHHhhhhccchHHhccH
Confidence 1110 011 123334445555543 3488999999998887665322 122234
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHH-Hhcccccccc
Q 000696 1289 TQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KSINSHSWRS 1329 (1349)
Q Consensus 1289 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~~~~~~~~ 1329 (1349)
| .|.+ +-+-..+.++..|..||.-|+ ..-+.-.|-+
T Consensus 418 E----~Li~-~A~~~h~tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 418 E----KLIR-TAKANHETCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred H----HHHH-HHHhcCccHHHHHHHHHHhcCcchhhHHHhcc
Confidence 4 3444 456689999999999998877 2223334554
No 249
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=22.72 E-value=1.6e+02 Score=23.35 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1289 TQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1289 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+.+...|.-.-..|+|+.||.-|..+|..|-
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 5566667664457999999999999987663
No 250
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.70 E-value=1.1e+02 Score=31.96 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000696 1048 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1087 (1349)
Q Consensus 1048 ~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~~v~~~~~~ 1087 (1349)
+.+-+.+..-+.++++.|+++||+.+..--...+.+|.+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~ 55 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDN 55 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence 4456677788899999999999999998766566777644
No 251
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.69 E-value=9.4e+02 Score=29.15 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHhhhcCchhHHHHHHHHhhhhcccCccchHHHHHHHHHhhhcCCChhcHHHHHHHHHHhhcCCCChhHHHHHhhhccCC
Q 000696 997 GCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1349)
Q Consensus 997 r~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1349)
..|.++...+++ .+++.+-+....-|..|.++..+...+.+....+.+.+.+.+..-+.+.
T Consensus 167 ~~M~~~~~~W~~----~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--------------- 227 (372)
T PF12231_consen 167 QQMIKHADIWFP----ILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--------------- 227 (372)
T ss_pred HHHHHHHHHHHH----HHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc---------------
Q ss_pred cchhhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHH
Q 000696 1077 PSIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA 1155 (1349)
Q Consensus 1077 ~~~~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~ 1155 (1349)
++...+.+-+..-+.+ .+...++..=.++-.+++.-. -.-.+++-....-...+|++.++.+|..|+.....
T Consensus 228 ------~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~ 300 (372)
T PF12231_consen 228 ------KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRR 300 (372)
T ss_pred ------cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q ss_pred hhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHH--HHHHHHhhhhhh
Q 000696 1156 LSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQA--CRNTLKQVAPFM 1205 (1349)
Q Consensus 1156 L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~a--ck~tL~~~a~lL 1205 (1349)
+.. ...........-+.-..-|+...++-+...-.+. ...++...++++
T Consensus 301 liy-~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 301 LIY-ASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHH-HhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
No 252
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=1.9e+02 Score=36.65 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=46.0
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhH-HHHHHHHHH---
Q 000696 656 PRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE-VFNRIVSSV--- 731 (1349)
Q Consensus 656 prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~-~~~~i~~~i--- 731 (1349)
-||++|+++.++.|-+|--+++.+.-.++. + ...+.+|++..+....++. .|+.. +-..+...|
T Consensus 104 vR~aHPd~~fv~aAe~a~~~~~e~ve~LNT--------n-~~LY~~Lk~~l~~~~~l~~---~d~e~~v~~lll~DFE~s 171 (704)
T KOG2090|consen 104 VRQAHPDPEFVEAAEEACRSMFELVESLNT--------N-VALYQKLKKVLQDSSRLDD---LDPETYVARLLLDDFEKS 171 (704)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHhcCcccccc---cCHHHHHHHHHHHHHHhh
Confidence 379999999999999999999988765543 1 1225555543221111211 24333 111122222
Q ss_pred HccCChhHHHHHHHH
Q 000696 732 CILLTKDELVATLHS 746 (1349)
Q Consensus 732 ~~~L~~~el~~ll~~ 746 (1349)
+.+|++++...|+.-
T Consensus 172 GIhL~~~kr~kfv~L 186 (704)
T KOG2090|consen 172 GIHLDPEKREKFVQL 186 (704)
T ss_pred cccCCHHHHHHHHHH
Confidence 368888888777754
No 253
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=2.3e+03 Score=29.86 Aligned_cols=596 Identities=13% Similarity=0.075 Sum_probs=285.1
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH--HHHHHHHcc
Q 000696 657 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN--RIVSSVCIL 734 (1349)
Q Consensus 657 rC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~--~i~~~i~~~ 734 (1349)
.-.|+-|-||..|.++|...|+=- +.+....+..- ..-..-|-..++..-+ +.+..++++ .+.+.++..
T Consensus 146 ~~~h~~pkvRk~a~~~i~~VL~~p-----~~~~~~~HpA~--~~vak~cl~~~e~~~~--~a~~t~v~~~L~Ll~~~~~~ 216 (1176)
T KOG1248|consen 146 FAAHKKPKVRKAAQRGIAAVLKGP-----PFAPDAEHPAS--LSVAKFCLALIESKLG--SAENTTVLRSLMLLRDVLST 216 (1176)
T ss_pred HHhcCchHHHHHHHHHHHHHHcCC-----CCCccccchHH--HHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999998775411 11111111110 0000111111122211 012234443 466777777
Q ss_pred CChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHH----HHHHHHHH
Q 000696 735 LTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLR----LETLGAIS 810 (1349)
Q Consensus 735 L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r----~~~l~ai~ 810 (1349)
+|...+..+..+|+.-...........+-+.+..+++.+..-+...--+.++..|+.-=++.++...- +.+-++..
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~ 296 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHD 296 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Confidence 88888888888888888877777777888888888887777664333667777777766666665543 55667778
Q ss_pred HHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHh-hcCcccHHHHHHHHHHHHccCCCccCCCccCCCCC
Q 000696 811 CLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAF-SQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSS 889 (1349)
Q Consensus 811 ~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al-~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~ 889 (1349)
.||.+|.++.+ ..+. .-++. +...+ +..+.++.-+-+-+..+++..+.+.+.
T Consensus 297 ~la~~q~~~~~-~~~~----------------~~~~~--~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~-------- 349 (1176)
T KOG1248|consen 297 ILATLQEEKAL-QALP----------------RLFSL--FFTILESLIEELVQAASQSLKEILKESVTVIDA-------- 349 (1176)
T ss_pred HHHHhCHHHHH-Hhhh----------------hhhhH--HHHHHhcccHHHHHHHHHHHHHHhcccCcccHH--------
Confidence 99999988655 4331 11221 22222 234455666666667777776653331
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCC--CC---------CCCChHHHHHH
Q 000696 890 HSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLA--SS---------GQHEPLRAILT 958 (1349)
Q Consensus 890 ~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~--~~---------~~~~P~~~ale 958 (1349)
.+ ..+++.++-.. |. +|-.+-=|+++++.-..|+..|.- ++ ..-.+++.-++
T Consensus 350 -------~c------~~~~~~~l~~k---f~-~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld 412 (1176)
T KOG1248|consen 350 -------LC------SKQLHSLLDYK---FH-AVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLD 412 (1176)
T ss_pred -------HH------HHHHHHHHcch---HH-HHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 00 11455555433 22 222333355566655556544431 00 01112222222
Q ss_pred -HHHHHHHhhcchHHHHHHHh---------cCCCC-----------ChhhHHHHHHHHHHHhhhcCc--------h-hHH
Q 000696 959 -SFQAFCECVGDLEMRKILAR---------DGEQN-----------DKEKWINLIGDVAGCVSIKRP--------K-EVQ 1008 (1349)
Q Consensus 959 -Alk~ll~~~g~~~~~~~L~~---------~g~W~-----------~~e~~~~gV~lLAr~m~~~~~--------~-~~~ 1008 (1349)
+.=+.....|-+.+.+.+-. ...|- +-..|.+-+--+|..|..+.. . ...
T Consensus 413 ~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~ 492 (1176)
T KOG1248|consen 413 QCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYD 492 (1176)
T ss_pred HHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHH
Confidence 33333344566555544322 12464 666777777777776643211 1 233
Q ss_pred HHHHHHhhhh----cccCcc--------------------chHHHHHHHHHhhhcC---CC----hhcHHHHHHHHH---
Q 000696 1009 TICLILTKSI----NRQQRF--------------------QREAAAAALSEFVRYS---GG----FDSLLEQMVEAL--- 1054 (1349)
Q Consensus 1009 ~i~~~L~~~L----~s~~~~--------------------~Ri~a~af~sELl~~~---~~----~~~l~~~~i~~L--- 1054 (1349)
.++.+++.+| +.|-+. -|.+.+.-+..|++.+ .. .+.+-+..-|.|
T Consensus 493 tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~l 572 (1176)
T KOG1248|consen 493 TLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRL 572 (1176)
T ss_pred HHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHH
Confidence 3334443332 222222 2444444444455442 10 011111111111
Q ss_pred HhhcC----C--CChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccCCcCCc
Q 000696 1055 CRHVS----D--ESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAV 1123 (1349)
Q Consensus 1055 ~~~l~----D--~~~~VR~lslrGLgnl~~~----~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~ 1123 (1349)
-+.-. + ..+..|.-.|.-..+.-.+ ++....+.-+.+..+..++.- +.....-+..+-.+....+...+
T Consensus 573 fn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v 652 (1176)
T KOG1248|consen 573 FNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV 652 (1176)
T ss_pred HHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH
Confidence 11111 1 1111222222222111111 111111122222333332111 22444445555555666666666
Q ss_pred chhHHhHHhhhcCcCCCC-ChHHHHHHHHHHHHhhccCCCcchHHHHHH----HHhhhhHHHHhccCCChhHHH---HHH
Q 000696 1124 EPILLNLSVRLRNLQVSM-NVKMRRNAFAAFGALSNFGVGSQREAFLEQ----IHAMLPRLILHIYDDDLSVRQ---ACR 1195 (1349)
Q Consensus 1124 ~~~l~~i~~~lrpffede-~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ----v~~~LvpLLlHL~D~~~~V~~---ack 1195 (1349)
+.++ .+.|.|++- +..++.-|+++++.|+.+. .-+.+.+| |.+.|.+= .++.+..++. .|=
T Consensus 653 s~l~-----~v~~~~e~~~~~~vQkK~yrlL~~l~~~~---s~~~~~~q~i~~I~n~L~ds---~qs~~~~~~~~rl~~L 721 (1176)
T KOG1248|consen 653 SKLF-----TVDPEFENSSSTKVQKKAYRLLEELSSSP---SGEGLVEQRIDDIFNSLLDS---FQSSSSPAQASRLKCL 721 (1176)
T ss_pred HHHH-----HhhHHhhccccHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHHHHHH---HhccchHHHHHHHHHH
Confidence 6555 678999987 8999999999999999862 22223333 44444432 3333333332 333
Q ss_pred HHHHhhhhhhhh-h----hhhhh-ccccCCCC-CCCChHHHHHHHHHHHH-----HhC-cchHHHHHHHHHHhhcCCChh
Q 000696 1196 NTLKQVAPFMEI-G----VYGIF-NSHCFNSD-HRSDYETFVRDLTRQFV-----QHF-PSRIDSYMGSTIQAFEAPWPI 1262 (1349)
Q Consensus 1196 ~tL~~~a~lL~~-~----l~~lf-~~~~~~~~-~~l~~~~f~~~l~k~L~-----~~~-~~~~~~~l~~~l~ylkS~~~~ 1262 (1349)
.++..+.+.-.. . +.+++ .....+.+ ++..| +-+-.++++=. .+- ++.++.|+...-.-+=..-..
T Consensus 722 ~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af-~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~ 800 (1176)
T KOG1248|consen 722 KRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAF-ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTR 800 (1176)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHH-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHH
Confidence 344444441111 1 12221 11111111 11111 22222331000 111 457888887766544444444
Q ss_pred HHHHHHHHHHhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000696 1263 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1263 IR~~A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
+++.-..-++.+++... ...+....+.+++.... .+....+.|+..|-..+..+.
T Consensus 801 ~~as~Ivai~~il~e~~-~~ld~~~l~~li~~V~~-~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFK-NILDDETLEKLISMVCL-YLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 55444444555555332 22222334667777777 566788888877766655544
No 254
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.53 E-value=4.7e+02 Score=31.07 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--h---------hhhhHHHHHHHHHhhccCCChh-HHHHHHHHHH
Q 000696 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--H---------IHQYATQVLSVILALLDDLDES-VQLTAVSCLL 1112 (1349)
Q Consensus 1045 ~l~~~~i~~L~~~l~D~~~~VR~lslrGLgnl~~~--~---------v~~~~~~lL~all~~L~d~d~~-V~leAm~~L~ 1112 (1349)
...+.+++.+.-+.++++..|-..||+.|..+... + .+.|.-.++.-++.-+-|++.. .--.-...|.
T Consensus 161 ~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 161 EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 34566888999999999999999999999977532 1 1344455666677777666533 3333335556
Q ss_pred HHhc
Q 000696 1113 TILK 1116 (1349)
Q Consensus 1113 ~lL~ 1116 (1349)
+++.
T Consensus 241 ~Lf~ 244 (319)
T PF08767_consen 241 NLFR 244 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 255
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=2.2e+02 Score=34.57 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=55.2
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCCCCChHHHHHHHHHHHHhhc
Q 000696 1090 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1158 (1349)
Q Consensus 1090 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1158 (1349)
.-++.-+...+..|..+|+.+|.+++.. -...+.+-.-.+...+++.+-|++..||..++.++-.++-
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 3445566667889999999999999987 3344555667788899999999999999999999888664
No 256
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=20.83 E-value=1.7e+03 Score=27.75 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHhhhcCcCCCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh--ccCCChhHHHHHHHHHHhhhh
Q 000696 1130 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH--IYDDDLSVRQACRNTLKQVAP 1203 (1349)
Q Consensus 1130 i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH--L~D~~~~V~~ack~tL~~~a~ 1203 (1349)
+..++-.+|+..+.++-.++.-..|++++. +.-+...+..+..+-|+.++.. -.|.|..+.-||-.||+..+.
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 345567889999999999888889998873 3345666778888888888864 556677777899999988663
No 257
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=20.09 E-value=2.9e+02 Score=26.90 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhccccc
Q 000696 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELS 778 (1349)
Q Consensus 727 i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~ 778 (1349)
.++.....||......++..+.+.+.-.......-.+.++..+++.+|..+.
T Consensus 17 ~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~ 68 (110)
T PF04003_consen 17 DIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLS 68 (110)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3444557899999999999999988744455788889999999999999994
Done!