Query 000696
Match_columns 1349
No_of_seqs 245 out of 389
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 15:53:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000696.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_469-473//hhsearch_pdb/000696hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 1.0 1 1 152.8 67.8 977 3-1204 11-1036(1230)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 149.0 52.6 139 1062-1203 599-742 (852)
3 1b3u_A Protein (protein phosph 1.0 1 1 142.8 42.8 263 1007-1319 322-586 (588)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 138.8 56.3 216 990-1205 620-859 (861)
5 4fdd_A Transportin-1; heat rep 1.0 1 1 134.1 55.0 150 1049-1202 629-783 (852)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 134.0 46.2 263 1025-1320 572-857 (861)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 132.0 66.0 886 225-1327 127-1101(1230)
8 1qgr_A Protein (importin beta 1.0 1 1 129.3 41.7 232 1064-1323 623-874 (876)
9 1b3u_A Protein (protein phosph 1.0 1 1 126.6 34.7 529 570-1322 12-550 (588)
10 1qgr_A Protein (importin beta 1.0 1 1 117.6 59.9 213 988-1203 628-871 (876)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=152.81 Aligned_cols=977 Identities=14% Similarity=0.118 Sum_probs=454.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHH-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 22130254421046798997653079903320-42588999998763100489999999999998511520167776301
Q 000696 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1349)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~ilrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~yl~~~~g~~~i 81 (1349)
++.++.+.+...|..++.-|...++.....+. .....++..+-..+.|++.+||.+-+..+..++.+. +...+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~------~~~~~ 84 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV------KEYQV 84 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS------CHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------CHHHH
T ss_conf 997558987859999999999997416657875679999999999866999899999999999999758------79899
Q ss_pred HEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHCCCC----CCCCC
Q ss_conf 30012033467422123444445678890479999897678762240023------361489876210673----67421
Q 000696 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSA 151 (1349)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~lltttv~~m------~~~LWP~LL~~i~p~----~yt~a 151 (1349)
++++..+.-. .. -+...+|..+.++|..+....+.. ..-.||.++.++... +-...
T Consensus 85 ~~i~~~Ll~~---l~-----------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 85 ETIVDTLCTN---ML-----------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHH---TT-----------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHH---HC-----------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999998---66-----------983889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 23488999999974125898644444577899987999999999825974540459999999987088899401433886
Q 000696 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231 (1349)
Q Consensus 152 l~~i~k~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~~~~rg~~~L~lL~~l~~~i~~~l~~~W~~ 231 (1349)
-...+.++..++... +... .|.-..++..++-.+.+|... --..++..+..+........ ...
T Consensus 151 ~~~al~~l~~~~~~~---~~~l---------~~~~~~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~~---~~~ 213 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQ---GGLL---------VNFHPSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNIV---FVD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHT---CSSC---------TTTHHHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTT
T ss_pred HHHHHHHHHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHH---HHH
T ss_conf 999999999999982---7677---------887999999999987599689--99999999999998568999---999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 28888720025777778951474299999999998340115670899999999853201799936677999999999871
Q 000696 232 EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQK 311 (1349)
Q Consensus 232 ~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el~~q~~~y~~~~~eK~fL~k~lG~~L~~ 311 (1349)
.+|.|+++|....+ ... ...--+.+-.+....=+.+. .+...+...+.+.+. .+++.-+..-+.++|.....
T Consensus 214 ~l~~l~~~L~~~~~---~~~-r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 214 LIEHLLSELSKNDS---MST-TRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHTCS---SCS-CTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCC---HHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998616775---568-99999999999998689899--889999999999866--89778999999999999997
Q ss_pred CCCH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH--HHHHHCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 2895--5899999999883176886210469999999962068999999999--88510122100011102465433214
Q 000696 312 VADR--NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKG--ILDNIGQSLFQRLLSFFSNSYRMEES 387 (1349)
Q Consensus 312 ~~~~--~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~--~~~~~~~~~~~~~l~~~k~~~~~~e~ 387 (1349)
+... .++..-+..++....+.... . ..-. +...+..++ ..... .... ..+.+. +...
T Consensus 286 ~~~~~~~~l~~li~~ll~~l~~d~~~-----~--~~~d-----~~~~~~~~~~~~~~~~--~~~~---~~~~~~--~d~~ 346 (1230)
T 1u6g_C 286 CPKEVYPHVSTIINICLKYLTYDPNY-----N--YDDE-----DEDENAMDADGGDDDD--QGSD---DEYSDD--DDMS 346 (1230)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCCC-------------------------------------------------------CT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC-----C--CCCC-----CCCCCCCCCCCCCCCH--HHCC---CCCCCC--CCCC
T ss_conf 84877776899999999982789988-----8--7644-----1101122334465301--1001---366645--5567
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC----
Q ss_conf 7699999998999983099146899998875555575541026546899999999999999874221-59976887----
Q 000696 388 DDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAE-NGASFPLK---- 462 (1349)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~-~~~~f~f~---- 462 (1349)
..+|.+.+.+.+.++...| +.+.+.++. ++..+..++ ...+..++.+.++++..+.+++..... ......++
T Consensus 347 ~~vR~~A~~~l~~l~~~~~-~~~~~~~~~-l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVSTRH-EMLPEFYKT-VSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp THHHHHHHHHHHHHHTTCC-TTHHHHHTT-THHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHHCH-HHHHHHHHH-HHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 7999999999999997466-679999999-989999871-7986579999999999999972424343467520135645
Q ss_pred -------CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -------8799999999983468897777823566769999999843200458887846799998773513226899922
Q 000696 463 -------KRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPID 535 (1349)
Q Consensus 463 -------~k~eLl~~l~~~i~~ep~~~l~s~~~~l~~vr~~al~a~t~L~~L~P~l~~e~~~~ll~~c~~~~~lp~~~~~ 535 (1349)
.-++++..+...++.+. -++|+-++.++..+++.-|..-...-..++..++..+.-+.....
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~~-----------~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~ 492 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEKS-----------VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN 492 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCSC-----------HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 599999874699999999861377-----------879999999999999976110577799999999999748788516
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 17999999999999996015888766399999999966787319248866579999999999988422102445788887
Q 000696 536 VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGS 615 (1349)
Q Consensus 536 l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~ 615 (1349)
....+..++. .++...+. ......+..++..+..++......-|..|+.++..+.+.+...
T Consensus 493 v~~~a~~~l~----~~~~~~~~--~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~------------- 553 (1230)
T 1u6g_C 493 LKIDALSCLY----VILCNHSP--QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL------------- 553 (1230)
T ss_dssp HHHHHHHHHH----HHHHSSCG--GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS-------------
T ss_pred HHHHHHHHHH----HHHHHCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-------------
T ss_conf 8999999999----99983898--8788679999999999971424689999999999999871675-------------
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6512345442103577899765677123334455889852465--68993599989999999999882099998998886
Q 000696 616 CTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGI 693 (1349)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lig~l~prC--~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~ 693 (1349)
....+..| .+-+..++..+...+ .|+++++|..|+.|+..+..-... ... .
T Consensus 554 --------------~~~~~~~~------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-----~~~-~- 606 (1230)
T 1u6g_C 554 --------------DQPSSFDA------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-----NLG-S- 606 (1230)
T ss_dssp --------------SSCCCCCC------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-----GCC-T-
T ss_pred --------------CCCCCCCH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----HHH-H-
T ss_conf --------------55653232------78999999999998732699889999999999999998270-----324-4-
Q ss_pred CHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 212225552200799997404999990589999999997009---9-468999999999832589901289999999999
Q 000696 694 DLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILL---T-KDELVATLHSCTTAICDRTKQSAEGAIQAVVEF 769 (1349)
Q Consensus 694 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~i~~~i~~~L---~-~~el~~li~~ll~~L~d~~~~~~~aA~~~L~~~ 769 (1349)
.. ...+..+. +.+.. ........+....++... . ..-+...+-.+...+.+.+......|+..+..+
T Consensus 607 --~~-~~~l~~L~---~~l~~---e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 607 --DL-PNTLQIFL---ERLKN---EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --HH-HHHHHHHH---HHTTS---SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHHH---HHHCC---CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf --38-89999999---88445---30599999999999818564436888999999999999867888999999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
Q ss_conf 85103654401063599999998731--1708899999999999741057335899998421454101000001599882
Q 000696 770 VTKRGNELSETDVSRTTQSLLSAAVH--ITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPM 847 (1349)
Q Consensus 770 l~~rG~~L~e~~V~~i~~~I~~~l~~--i~~~~~r~~~l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~ 847 (1349)
++..+..+. ...+...+..-++. ..+.+....++.++..+.+..+..+. .
T Consensus 678 ~~~~~~~~~---~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~-~------------------------ 729 (1230)
T 1u6g_C 678 IKNYSDSLT---AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS-K------------------------ 729 (1230)
T ss_dssp HHHCCTTCC---HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG-G------------------------
T ss_pred HHCCCCCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH-H------------------------
T ss_conf 960433389---899999999987635754187899999999999884912677-7------------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 15899830081208999999999970599856777668888888888755247999999999987148821188899852
Q 000696 848 QDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSY 927 (1349)
Q Consensus 848 d~~W~al~~d~~l~~~vL~~LL~~L~~~~~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~f 927 (1349)
....++..++..+..... ....+.+...+...+...+.. ...|
T Consensus 730 ------------~~~~~l~~~~~~l~~~~~--------------------~~~~~~~l~~~~~~l~~~~~~-----~~~~ 772 (1230)
T 1u6g_C 730 ------------ISGSILNELIGLVRSPLL--------------------QGGALSAMLDFFQALVVTGTN-----NLGY 772 (1230)
T ss_dssp ------------TTTTTHHHHHHHHTCTTC--------------------CHHHHHHHHHHHHHHHTTCCT-----TCSH
T ss_pred ------------HHHHHHHHHHHHHCCCCC--------------------CHHHHHHHHHHHHHHHHCCCC-----CCCH
T ss_conf ------------677689999999758621--------------------057899999999999834788-----7889
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC-HHH-HHHHHHHHHHHHHCCHHHHHHHHHC--CCCC--CHHHH----HHHHHHHHH
Q ss_conf 799999999866204689889987-479-9999999999861566899999751--9998--75659----999999997
Q 000696 928 APVLAALTLQLGSCHGLASSGQHE-PLR-AILTSFQAFCECVGDLEMRKILARD--GEQN--DKEKW----INLIGDVAG 997 (1349)
Q Consensus 928 p~Ll~aLL~ql~~~~~~~~~~~~~-P~~-~alealk~ll~~~g~~~~~~~L~~~--g~W~--~~~~~----~~gV~~LAr 997 (1349)
+.++-.|+..+.. ..++... ..+ .+-.++-.++...|.... ..++.- .-.. ..+.- ..+++.+++
T Consensus 773 ~~ll~~l~~~~~~----~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~ 847 (1230)
T 1u6g_C 773 MDLLRMLTGPVYS----QSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 847 (1230)
T ss_dssp HHHHHHHSTTTTT----C----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999998500357----887320001048999999999984656668-99999999837887667999999999998615
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 76410952179999999442114575641889999998510678700079999999986308999568989851015775
Q 000696 998 CVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1077 (1349)
Q Consensus 998 ~l~~~~~~~i~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~ 1077 (1349)
.. ... + .+.+...+.+.+.++.+..|..|...+..+.... ++..+..+.+.+.+. +.+|...+++|..+.
T Consensus 848 ~~-~~~-~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i 917 (1230)
T 1u6g_C 848 HI-DLS-G-QLELKSVILEAFSSPSEEVKSAASYALGSISVGN------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEII 917 (1230)
T ss_dssp HS-CCC-S-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHH
T ss_pred CC-CCC-C-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 67-876-5-6418999999847997789999999968775269------998899999987266-032498899999998
Q ss_pred C----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 1----124432777999999420479935899999999998512896875025886775313867779957899999999
Q 000696 1078 S----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAF 1153 (1349)
Q Consensus 1078 ~----~kv~~~~~~lL~all~~L~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~Lf 1153 (1349)
. .....+.+.+++.++..+.+.++.+...+..+|+++..... .. +..++..++.+.++.+|..++..+
T Consensus 918 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~----~~----l~p~l~~~l~~~~~~~R~~~~~~l 989 (1230)
T 1u6g_C 918 SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP----ET----LLPRLKGYLISGSSYARSSVVTAV 989 (1230)
T ss_dssp HSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG----GG----THHHHTTTSSSSCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH----HH----HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 2387666776699999999987338304468999988756650676----88----889999985699788999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 985302798606879999995466798741589946999999999944022
Q 000696 1154 GALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1204 (1349)
Q Consensus 1154 G~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l 1204 (1349)
+.+...... .+...+...+.+++.+|+|++++|++++-.+|..++..
T Consensus 990 ~~~~~~~~~----~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~ 1036 (1230)
T 1u6g_C 990 KFTISDHPQ----PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1036 (1230)
T ss_dssp GGGCCSSCC----THHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999706823----35898999899999864898587999999999999842
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=148.95 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHCCCCCCH---HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 956898985101577511---244327--779999994204799358999999999985128968750258867753138
Q 000696 1062 SPTVRGLCLRGLVQIPSI---HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1136 (1349)
Q Consensus 1062 ~~~VR~lalrGLgnl~~~---kv~~~~--~~lL~all~~L~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrp 1136 (1349)
+..+|.-+++.+|.++.. +...|. +.+++.++..+.|.+..|+..+...++.+....+ ..+.+++..+..-+..
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~ 677 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGT 677 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 611999999999789998747699883677189999998389984499999999999999816-8889879999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6777995789999999998530279860687999999546679874158994699999999994402
Q 000696 1137 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1203 (1349)
Q Consensus 1137 ffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1203 (1349)
.++++..++|..|+.+.|+++...+ ..-.++.+.+...+++++-+ .+....|...+..|+++.+.
T Consensus 678 ~l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 678 NLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHH
T ss_conf 7694206899999999999999711-76787899999999998579-98872077889999999998
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=142.79 Aligned_cols=263 Identities=17% Similarity=0.157 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHHHH
Q ss_conf 7999999944211457564188999999851067870007999999998630899956898985101577511-244327
Q 000696 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYA 1085 (1349)
Q Consensus 1007 i~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~~~ 1085 (1349)
.+.++..+...+++++...|..++..+.++...... ....+.++..+...++|+++.||..++.+|+.+... ....+.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 400 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999986199889999999999999888627-6788889999999837983689999999899999754989898
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 77999999420479935899999999998512896875025886775313867779957899999999985302798606
Q 000696 1086 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1165 (1349)
Q Consensus 1086 ~~lL~all~~L~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1165 (1349)
+.+++.+...+.|.+..++..++..++.+...++...+.+.+... +..++.|....||.+|+..+|.++...+.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 474 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL---CMAWLVDHVYAIREAATSNLKKLVEKFGK--- 474 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHH---HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHCC---
T ss_conf 888999999835998139999999999999880989899999999---99882598199999999999999999684---
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 8799999954667987-415899469999999999440223355664320356777888985999999999999959321
Q 000696 1166 EAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1244 (1349)
Q Consensus 1166 ~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~ 1244 (1349)
+++ ...++|.+. .++|++..||.++-.++..++..++- . ..
T Consensus 475 ~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--------------------------------~--~~ 516 (588)
T 1b3u_A 475 EWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--------------------------------D--IT 516 (588)
T ss_dssp HHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--------------------------------H--HH
T ss_pred HHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH--------------------------------H--HH
T ss_conf 457----888999999983189879999999999999976698--------------------------------9--99
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999998752099936889999999753015923554101699999999998542998037899999999999
Q 000696 1245 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1319 (1349)
Q Consensus 1245 ~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1319 (1349)
...++...+..++++.+.+|.+|+..+|.+....+.+.. .+.+.+.|.. +..|+|+.||..|..|++.+.
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEK-LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998667899862799999999999998653645----9999999998-747996669999999999763
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=138.83 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCCCC--HHHH
Q ss_conf 99999997764109521799999994421145756418899999985106787-00079999999986308999--5689
Q 000696 990 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVR 1066 (1349)
Q Consensus 990 ~gV~~LAr~l~~~~~~~i~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~--~~VR 1066 (1349)
..++.++.++-..-.++++.++..+...+++.+...|..++..++.+...... .....+.++..+.+.+.|++ +.+|
T Consensus 620 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr 699 (861)
T 2bpt_A 620 YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELK 699 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999976609999999999999886556678999999999999987454031119999999999727865567665
Q ss_pred HHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHCCCCC--CCCCHHHHHH
Q ss_conf 8985101577511---244327779999994204799-----------35899999999998512896--8750258867
Q 000696 1067 GLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPILLNL 1130 (1349)
Q Consensus 1067 ~lalrGLgnl~~~---kv~~~~~~lL~all~~L~d~~-----------~~V~leAm~~L~~iL~~l~~--~~~~~~~~~i 1130 (1349)
..++.++|.++.. ....|.+.+++.++..+.... ..++..++.+++.+...++. ..+.++...+
T Consensus 700 ~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i 779 (861)
T 2bpt_A 700 PAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI 779 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999984050899999999999999736789997588999999999999999999999826778899999999
Q ss_pred HHHHCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 75313867779----95789999999998530279860687999-99954667987415899469999999999440223
Q 000696 1131 SVRLRNLQVSM----NVKMRRNAFAAFGALSNFGVGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1205 (1349)
Q Consensus 1131 ~~~lrpffede----~~~vR~aAi~LfG~L~~~~~~~~~~~~~e-qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL 1205 (1349)
...+.....|. ++.+|.+|+.++|+++...+|..-..+.. ++...++..+-+.++.+..|++.|+++++.++..+
T Consensus 780 ~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999987485557869999999999999998828824889872679999999885355788778999999999999873
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=134.10 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=96.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9999998630899956898985101577511---2443277799999942047993589999999999851289687502
Q 000696 1049 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1125 (1349)
Q Consensus 1049 ~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~---kv~~~~~~lL~all~~L~d~~~~V~leAm~~L~~iL~~l~~~~~~~ 1125 (1349)
.++..+...+.|+++.||.-+..-+|.++.. +...|.+.+++.++..+++.+..+...|..+++.+....+. .+.+
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p 707 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQP 707 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGG
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 189999998389984499999999999999816888987999999999876942068999999999999997117-6787
Q ss_pred HHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5886775313867779--9578999999999853027986068799999954667987415899469999999999440
Q 000696 1126 ILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1202 (1349)
Q Consensus 1126 ~~~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1202 (1349)
+...+...+-+.+++. +..+|..|+.++|.++..+. ....++..|+...+..-|-...| .+.+..+-.+|+...
T Consensus 708 ~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~-~~~~~~l~~~~~~~~~~l~~~~d--~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 708 YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRD--NEEKDSAFRGICTMI 783 (852)
T ss_dssp GTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCH-HHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHH
T ss_conf 89999999999857998872077889999999998688-97675589999999998653666--079999999999999
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=133.96 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC
Q ss_conf 418899999985106787-000799999999863089995-6898985101577511---24432777999999420479
Q 000696 1025 QREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL 1099 (1349)
Q Consensus 1025 ~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~-~VR~lalrGLgnl~~~---kv~~~~~~lL~all~~L~d~ 1099 (1349)
.|..++..++.++..... -....+.++..+...+++.++ .||.-++..+++++.. ....|.+.+++.++..+.+.
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999855634789999999999997467887579999999999999976609999999999999886556
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9358999999999985128968750258867753138677799--57899999999985302798606879999995466
Q 000696 1100 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLP 1177 (1349)
Q Consensus 1100 ~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~--~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~Lv 1177 (1349)
+..++..++..++.+....+. .+.++...+...+...+++++ .++|..++..+|+++...+. .-.++.+++...+.
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-DFIPYLNDIMALCV 729 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCH-HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 678999999999999987454-0311199999999997278655676659999999999998405-08999999999999
Q ss_pred HHHHHCC---CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 7987415---899-----46999999999944022335566432035677788898599999999999995932199999
Q 000696 1178 RLILHIY---DDD-----LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYM 1249 (1349)
Q Consensus 1178 pLLlHL~---D~~-----~~V~~ack~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l 1249 (1349)
..+-+-. |++ ..|+.++-.++..++.-++-. ...|. .++..+...+..
T Consensus 730 ~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~~-------------~~~~~i~~~l~~---------- 785 (861)
T 2bpt_A 730 AAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEALF-------------PYVGTIFQFIAQ---------- 785 (861)
T ss_dssp HHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHG-------------GGHHHHHHHHHH----------
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHH-------------HHHHHHHHHHHH----------
T ss_conf 997367899975889999999999999999999998267-78899-------------999999999999----------
Q ss_pred HHHHHHHCC---C-CHHHHHHHHHHHHHHHCCC-CHHHHHHCCHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999875209---9-9368899999997530159-23554101699-99999999854--29980378999999999998
Q 000696 1250 GSTIQAFEA---P-WPIIQANAIYFSSSILCLC-DDQHILSLFYT-QVFGLLVVKLS--QSADAIVRATCSSSLGWLLK 1320 (1349)
Q Consensus 1250 ~~~l~y~kS---~-~~~IR~aAa~fiG~l~~~~-~~~~~~~~~~e-~l~~~L~~~Ll--~Dpdp~VR~~Aa~aL~~l~~ 1320 (1349)
.+.+ + ...+|.+|+..+|.+...+ +.+... ... .++..|...+. ++.+..|+..|+-|++.+.+
T Consensus 786 -----~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 786 -----VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQ--FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp -----HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGG--GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred -----HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH--HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----87485557869999999999999998828824889--8726799999998853557887789999999999998
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=131.98 Aligned_cols=886 Identities=14% Similarity=0.103 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1433886288887200257777789514742999999999983401156--70899999999853201799936677999
Q 000696 225 IDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQE--TDWLISLGNAFTEQYVLYTPDDDHSALLH 302 (1349)
Q Consensus 225 l~~~W~~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d--~~W~~~L~~el~~q~~~y~~~~~eK~fL~ 302 (1349)
....|..-+|.|.+.++++.+ + .-.+.-+..+.+.+....+ ......+...+...+. .+.+.-+.--.
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~------~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQED------V--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC------H--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf 788999999999998757884------6--7999999999999998276778879999999999875--99689999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999998712895589999999988317-688621046999999996206-------89999999998851012210001
Q 000696 303 RCLGILLQKVADRNYVCDKIDWMYKQAN-IAIPTNRLGLAKAMGLVAASH-------LDAVLEMLKGILDNIGQSLFQRL 374 (1349)
Q Consensus 303 k~lG~~L~~~~~~~~V~~~L~~ll~~~~-~~~~~ereG~A~~~G~~A~~H-------ld~vL~~L~~~~~~~~~~~~~~~ 374 (1349)
+++|.+.....+. ++...+..++.... ..+...|.+.+.++|..+... ++.++.. +
T Consensus 197 ~al~~l~~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~---------------l 260 (1230)
T 1u6g_C 197 IALGHLVMSCGNI-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL---------------V 260 (1230)
T ss_dssp HHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH---------------H
T ss_pred HHHHHHHHHCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
T ss_conf 9999999856899-99999999999861677556899999999999998689899889999999---------------9
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11024654332147699999998999983099146899998875555575541026546899999999999999874221
Q 000696 375 LSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAE 454 (1349)
Q Consensus 375 l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~ 454 (1349)
+..+.+. .+.+|.+.+.+.|.++..++.+ +.+.++. ++..++..+ ..|+... +-..-.. .........
T Consensus 261 l~~l~d~-----~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~-li~~ll~~l--~~d~~~~--~~~d~~~-~~~~~~~~~ 328 (1230)
T 1u6g_C 261 VKFCNVD-----DDELREYCIQAFESFVRRCPKE-VYPHVST-IINICLKYL--TYDPNYN--YDDEDED-ENAMDADGG 328 (1230)
T ss_dssp HHHHSSC-----CTTTHHHHHHHHHHHHHCTTCC-CHHHHHH-HHHHHTTCC--CCC-----------------------
T ss_pred HHHHCCC-----CHHHHHHHHHHHHHHHHHCHHH-HHHHHHH-HHHHHHHHH--CCCCCCC--CCCCCCC-CCCCCCCCC
T ss_conf 9986689-----7789999999999999978487-7776899-999999982--7899888--7644110-112233446
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HCCCCCCCC
Q ss_conf 5997688787999999999834688977778235667699999998432004588878467999987735-132268999
Q 000696 455 NGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDP 533 (1349)
Q Consensus 455 ~~~~f~f~~k~eLl~~l~~~i~~ep~~~l~s~~~~l~~vr~~al~a~t~L~~L~P~l~~e~~~~ll~~c~-~~~~lp~~~ 533 (1349)
....+.. - -.+.. + .+. .-.+|..|..++..++...|. .-...+...+ .+......+
T Consensus 329 ~~~~~~~------~---~~~~~-~-~d~-------~~~vR~~A~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 329 DDDDQGS------D---DEYSD-D-DDM-------SWKVRRAAAKCLDAVVSTRHE----MLPEFYKTVSPALISRFKER 386 (1230)
T ss_dssp ---------------------------C-------TTHHHHHHHHHHHHHHTTCCT----THHHHHTTTHHHHHSTTSCS
T ss_pred CCCHHHC------C---CCCCC-C-CCC-------CHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHCCCC
T ss_conf 5301100------1---36664-5-556-------779999999999999974666----79999999989999871798
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHCCC-CCC-------CCHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22-1799999999999999601588-876-------639999----9999966787319248866579999999999988
Q 000696 534 ID-VVNPLIDNLITLLCAILLTSGE-DGR-------SRADQL----LHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFR 600 (1349)
Q Consensus 534 ~~-l~~~~~~aL~~lL~~ll~~~~~-d~~-------~~~~~L----~~iL~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~ 600 (1349)
.+ .-...+.++..++..+-...++ ++. .....+ ..+++.+.+.++++....|+.++.....+.....
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 65799999999999999724243434675201356455999998746999999998613778799999999999999761
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHH
Q ss_conf 422102445788887651234544210357789976567712333445588985246568993--599989999999999
Q 000696 601 TLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDS--EVRKISAQILDQLFS 678 (1349)
Q Consensus 601 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lig~l~prC~D~~~--~ir~~A~~~i~~Ll~ 678 (1349)
. .+ .+.+..++..+.....|++. .+|..+...+..++.
T Consensus 467 ~------------------------------~l----------~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 467 G------------------------------AL----------TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp T------------------------------TT----------GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred H------------------------------HH----------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 1------------------------------05----------7779999999999974878851689999999999998
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHC-HHHHHHHCCCCCCCHHHH-------HHHHHHHHHC-------CCCHHHHHHH
Q ss_conf 882099998998886212225552200-799997404999990589-------9999999970-------0994689999
Q 000696 679 ISLSLPRPVGSSSGIDLELSYGALSSL-EDVIAILRSDASIDPSEV-------FNRIVSSVCI-------LLTKDELVAT 743 (1349)
Q Consensus 679 I~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~~-------~~~i~~~i~~-------~L~~~el~~l 743 (1349)
-. +. + .. ..-+..+ .-....+ .+ .. ..+ +..+++.++. .+ ..-+..+
T Consensus 507 ~~-------~~--~-~~---~~~l~~llp~L~~~l-~d--~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~-~~~~~~l 568 (1230)
T 1u6g_C 507 NH-------SP--Q-VF---HPHVQALVPPVVACV-GD--PF-YKITSEALLVTQQLVKVIRPLDQPSSFDA-TPYIKDL 568 (1230)
T ss_dssp SS-------CG--G-GG---HHHHTTTHHHHHHHH-TC--SS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCC-HHHHHHH
T ss_pred HC-------CH--H-HH---HHHHHHHHHHHHHHH-CC--CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHH
T ss_conf 38-------98--8-78---867999999999997-14--24-68999999999999987167555653232-7899999
Q ss_pred HHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC----
Q ss_conf 99999832--589901289999999999851036544010635999999987311708899999999999741057----
Q 000696 744 LHSCTTAI--CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN---- 817 (1349)
Q Consensus 744 i~~ll~~L--~d~~~~~~~aA~~~L~~~l~~rG~~L~e~~V~~i~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~---- 817 (1349)
+..++..+ .|.......+|...+..+.+.-|..+.. .++.+++.+...+. .+..|..+.+++..++....
T Consensus 569 l~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-~~~~~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 569 FTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-DLPNTLQIFLERLK---NEITRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp HHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-HHHHHHHHHHHHTT---SSSHHHHHHHHHHHHTTCSSCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999987326998899999999999999982703244-38899999998844---530599999999999818564436
Q ss_pred ----CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHH-----HHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----33589999842145410100000159988215-----899830081--2089999999999705998567776688
Q 000696 818 ----SKIVFNEVLATAGKDIVTKDISRLRGGWPMQD-----AFHAFSQHA--VLSFLFLEHLISALNQTPFVKGDMEKGD 886 (1349)
Q Consensus 818 ----~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~-----~W~al~~d~--~l~~~vL~~LL~~L~~~~~~~e~~~~~~ 886 (1349)
..++ ..+... +..+-+--+ .+..+.... .+. .+.+...+....+.-++.
T Consensus 645 ~~~~~~i~-~~L~~~------------l~~~~~~~r~~a~~al~~l~~~~~~~~~---~~~v~~~l~~ll~ll~~~---- 704 (1230)
T 1u6g_C 645 RPVLGEGV-PILASF------------LRKNQRALKLGTLSALDILIKNYSDSLT---AAMIDAVLDELPPLISES---- 704 (1230)
T ss_dssp HHHHHHHH-HHHHHH------------TTSCCHHHHHHHHHHHHHHHHHCCTTCC---HHHHHHHHTTCGGGSCTT----
T ss_pred HHHHHHHH-HHHHHH------------HHHCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCC----
T ss_conf 88899999-999999------------9867888999999999999960433389---899999999987635754----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHH
Q ss_conf 888888887552479999999999871488211888998527999999998662046898899874--799999999999
Q 000696 887 YSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFC 964 (1349)
Q Consensus 887 ~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~P--~~~alealk~ll 964 (1349)
.......+..+|..+....+ ..+.+.++.++-.++..+.... +.. ....+..++.+.
T Consensus 705 ----------D~~~~~~~~~~L~~l~~~~~----~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~l~~~~~~l~ 763 (1230)
T 1u6g_C 705 ----------DMHVSQMAISFLTTLAKVYP----SSLSKISGSILNELIGLVRSPL-------LQGGALSAMLDFFQALV 763 (1230)
T ss_dssp ----------CHHHHHHHHHHHHHHTTSCG----GGGGGTTTTTHHHHHHHHTCTT-------CCHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHH
T ss_conf ----------18789999999999988491----2677767768999999975862-------10578999999999998
Q ss_pred HHHC-CHHHHHHHHH-CCCCCC-HH--HHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHH
Q ss_conf 8615-6689999975-199987-56--5999999999776---4109521799999994421145--7564188999999
Q 000696 965 ECVG-DLEMRKILAR-DGEQND-KE--KWINLIGDVAGCV---SIKRPKEVQTICLILTKSINRQ--QRFQREAAAAALS 1034 (1349)
Q Consensus 965 ~~~g-~~~~~~~L~~-~g~W~~-~~--~~~~gV~~LAr~l---~~~~~~~i~~i~~~L~~~L~s~--~~~~Ri~a~afls 1034 (1349)
.... .......++. -..|.. .. .+.+....+++++ +...++....++..+...++++ .+..+..+..++.
T Consensus 764 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 843 (1230)
T 1u6g_C 764 VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG 843 (1230)
T ss_dssp TTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 34788788999999985003578873200010489999999999846566689999999983788766799999999999
Q ss_pred HHHHCCCCHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 85106787000799999999863089995689898510157751124432777999999420479935899999999998
Q 000696 1035 EFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1349)
Q Consensus 1035 ELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~kv~~~~~~lL~all~~L~d~~~~V~leAm~~L~~i 1114 (1349)
|+........ . ..+...+...+.|+++.||..+..+||.++.+... ..++.++.++.+. ...+..++.+|+.+
T Consensus 844 ~~g~~~~~~~-~-~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~----~~lp~ll~~l~~~-~~~~~~~l~al~e~ 916 (1230)
T 1u6g_C 844 EVGHHIDLSG-Q-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP----EYLPFVLQEITSQ-PKRQYLLLHSLKEI 916 (1230)
T ss_dssp HHHHHSCCCS-C-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHSC-GGGHHHHHHHHHHH
T ss_pred HHCCCCCCCC-C-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 8615678765-6-41899999984799778999999996877526999----8899999987266-03249889999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH
Q ss_conf 5128968750258867753138677799578999999999853027986068799999954667-987415899469999
Q 000696 1115 LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR-LILHIYDDDLSVRQA 1193 (1349)
Q Consensus 1115 L~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~Lvp-LLlHL~D~~~~V~~a 1193 (1349)
+...+...+.++...|...+....+++.+.+|..+...+|.+..... ..++| |.-++.|+++.+|..
T Consensus 917 i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~------------~~l~p~l~~~l~~~~~~~R~~ 984 (1230)
T 1u6g_C 917 ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP------------ETLLPRLKGYLISGSSYARSS 984 (1230)
T ss_dssp HHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG------------GGTHHHHTTTSSSSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHCCCCHHHHHH
T ss_conf 82387666776699999999987338304468999988756650676------------888899999856997889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999944022335566432035677788898599999999999995932199999999875209993688999999975
Q 000696 1194 CRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSS 1273 (1349)
Q Consensus 1194 ck~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aAa~fiG~ 1273 (1349)
|-.++..+....+ -.+... +..++...+..++++...||++|+.-+|.
T Consensus 985 ~~~~l~~~~~~~~-----------------~~~~~~---------------l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 985 VVTAVKFTISDHP-----------------QPIDPL---------------LKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp HHHHTGGGCCSSC-----------------CTHHHH---------------HHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-----------------HHHHHH---------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999999970682-----------------335898---------------99989999986489858799999999999
Q ss_pred HHCCCCHHHHHHCCHHHHHHHHHHHHCCCCC------------------HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3015923554101699999999998542998------------------03789999999999986102544
Q 000696 1274 ILCLCDDQHILSLFYTQVFGLLVVKLSQSAD------------------AIVRATCSSSLGWLLKSINSHSW 1327 (1349)
Q Consensus 1274 l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd------------------p~VR~~Aa~aL~~l~~~~~~~~~ 1327 (1349)
.+++.+..... ....+.+.|.. ..+.++ -.||..|-++++.+.+++.....
T Consensus 1033 ~~~~~~~~~~~--~l~~~lp~l~~-~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~ 1101 (1230)
T 1u6g_C 1033 AAHNKPSLIRD--LLDTVLPHLYN-ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD 1101 (1230)
T ss_dssp HHHHCGGGTGG--GHHHHHHHHHH-TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC
T ss_pred HHHCCHHHHHH--HHHHHHHHHHH-HHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98428576897--79889899998-83026876013305896023677489999999999999998887478
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=129.30 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=119.9
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 6898985101577511---24432777999999420479-9358999999999985128968750258867753138677
Q 000696 1064 TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1139 (1349)
Q Consensus 1064 ~VR~lalrGLgnl~~~---kv~~~~~~lL~all~~L~d~-~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffe 1139 (1349)
.+|.-+++.+++++.. +...|.+.+++.+..++.+. +..|+..|+.+++.+....+ ..+.++...+...+...+.
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 850899999999999987609999999999999987586508799999999999999887-8546459999999999748
Q ss_pred C--CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC----C-------HHHHHHHHHHHHHHHHHHH
Q ss_conf 7--9957899999999985302798606879999995466798741589----9-------4699999999994402233
Q 000696 1140 S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD----D-------LSVRQACRNTLKQVAPFME 1206 (1349)
Q Consensus 1140 d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~----~-------~~V~~ack~tL~~~a~lL~ 1206 (1349)
+ .+.++|..++.++|.++...++.. ..+..++.. +++-.+++. + ..++.++-.++..+...++
T Consensus 702 ~~~~~~~~~~~~~~~l~~i~~~~g~~~-~~~l~~~~~---~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 702 NENVHRSVKPQILSVFGDIALAIGGEF-KKYLEVVLN---TLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp CTTSCGGGHHHHHHHHHHHHHHHGGGG-GGGHHHHHH---HHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 712338763999999999999703527-999999999---9999985558999758899999999999999999999974
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCH-HHH
Q ss_conf 55664320356777888985999999999999959321999999998752099--936889999999753015923-554
Q 000696 1207 IGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP--WPIIQANAIYFSSSILCLCDD-QHI 1283 (1349)
Q Consensus 1207 ~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~--~~~IR~aAa~fiG~l~~~~~~-~~~ 1283 (1349)
........+. .. +..++..+.. ++ .....++ +..+|.+|+..+|.+....+. +..
T Consensus 778 ~~~~~~~~~~-----~~--~~~~~~~i~~------------~l---~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 835 (876)
T 1qgr_A 778 GDQENVHPDV-----ML--VQPRVEFILS------------FI---DHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK 835 (876)
T ss_dssp CSSSSCCGGG-----GG--SGGGHHHHHH------------HH---HHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred CCCCCCCCHH-----HH--HHHHHHHHHH------------HH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 5755555438-----89--9999999999------------99---9986588888899999999999999882848899
Q ss_pred HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 1016999999999985429980378999999999998610
Q 000696 1284 LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1323 (1349)
Q Consensus 1284 ~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~~~~~ 1323 (1349)
.......+..-+.. .+.|+++.||..|+.|+|.+.+.-+
T Consensus 836 ~~~~~~~i~~ll~~-~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 836 LVEARPMIHELLTE-GRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHTSHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99704899999998-7546887689999999999997534
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=126.57 Aligned_cols=529 Identities=13% Similarity=0.075 Sum_probs=297.3
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99667873192488665799999999999884221024457888876512345442103577899765677123334455
Q 000696 570 LRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGN 649 (1349)
Q Consensus 570 L~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~ 649 (1349)
+..+...+.|+....|..|+..+..+....-. . .....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~---------------------------------------~---~~~~~ 49 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGV---------------------------------------E---RTRSE 49 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH---------------------------------------H---HHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCH---------------------------------------H---HHHHH
T ss_conf 99999985062199999999719999998697---------------------------------------9---89998
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHH---H
Q ss_conf 8898524656899359998999999999988209999899888621222555220079999740499999058999---9
Q 000696 650 RVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---R 726 (1349)
Q Consensus 650 Lig~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~---~ 726 (1349)
++..+.- +.|++.+||..+.+++..+.... +.. ++.... ... +. .+..+ .+ ..+-. .
T Consensus 50 l~~~L~~-~~d~~~~vr~~~~~~L~~~~~~~-------~~~-~~~~~l-l~~---L~----~l~~~--~~-~~vR~~a~~ 109 (588)
T 1b3u_A 50 LLPFLTD-TIYDEDEVLLALAEQLGTFTTLV-------GGP-EYVHCL-LPP---LE----SLATV--EE-TVVRDKAVE 109 (588)
T ss_dssp HHHHHHH-TCCCCHHHHHHHHHHHTTCSGGG-------TSG-GGGGGG-HHH---HH----HHTTS--SC-HHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHHHCC-------CCH-HHHHHH-HHH---HH----HHHHC--CH-HHHHHHHHH
T ss_conf 9988987-55785899999999997787605-------859-899998-999---99----98747--60-799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999970099468999999999832-589901289999999999851036544010635999999987311708899999
Q 000696 727 IVSSVCILLTKDELVATLHSCTTAI-CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1349)
Q Consensus 727 i~~~i~~~L~~~el~~li~~ll~~L-~d~~~~~~~aA~~~L~~~l~~rG~~L~e~~V~~i~~~I~~~l~~i~~~~~r~~~ 805 (1349)
....++..+++.++...+...+..+ .+.......+|+.++..+...-+... .+.++..+. ++....++.+|..+
T Consensus 110 ~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~~~l~~~l~-~l~~d~~~~VR~~a 184 (588)
T 1b3u_A 110 SLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----KAELRQYFR-NLCSDDTPMVRRAA 184 (588)
T ss_dssp HHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----HHHHHHHHH-HHHTCSCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHH-HHHCCCCHHHHHHH
T ss_conf 9999999799999999999999998507771799999999999998569999----999999999-98489978899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999974105733589999842145410100000159988215899830081208999999999970599856777668
Q 000696 806 LGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKG 885 (1349)
Q Consensus 806 l~ai~~La~~h~~~vV~~~ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~~~~~e~~~~~ 885 (1349)
.+++..++.....+.... .++..++..++. ++
T Consensus 185 ~~~l~~l~~~~~~~~~~~---------------------------------------~l~~~l~~~~~d-----~~---- 216 (588)
T 1b3u_A 185 ASKLGEFAKVLELDNVKS---------------------------------------EIIPMFSNLASD-----EQ---- 216 (588)
T ss_dssp HHHHHHHHHTSCHHHHHH---------------------------------------THHHHHHHHHTC-----SC----
T ss_pred HHHHHHHHHHHCHHHHHH---------------------------------------HHHHHHHHHHCC-----CC----
T ss_conf 998999999816776799---------------------------------------999999988249-----92----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH-HH-HHHHHHHHH
Q ss_conf 8888888887552479999999999871488211888998527999999998662046898899874-79-999999999
Q 000696 886 DYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP-LR-AILTSFQAF 963 (1349)
Q Consensus 886 ~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~P-~~-~alealk~l 963 (1349)
...-.+|..+|..+...-+ -........|- +.++.. ..++ .| .+.+++..+
T Consensus 217 ------------~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~-----l~~~~~--------d~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 217 ------------DSVRLLAVEACVNIAQLLP--QEDLEALVMPT-----LRQAAE--------DKSWRVRYMVADKFTEL 269 (588)
T ss_dssp ------------HHHHTTHHHHHHHHHHHSC--HHHHHHHTHHH-----HHHHHT--------CSSHHHHHHHHHTHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHH-----HHHHCC--------CCCHHHHHHHHHHHHHH
T ss_conf ------------8899989999999998579--88888789999-----999806--------99778999999999999
Q ss_pred HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 98615668999997519998756599999999977641095217999999944211457564188999999851067870
Q 000696 964 CECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF 1043 (1349)
Q Consensus 964 l~~~g~~~~~~~L~~~g~W~~~~~~~~gV~~LAr~l~~~~~~~i~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~ 1043 (1349)
....|. ......++..+...+++++...|..|+..+.++.......
T Consensus 270 ~~~~~~----------------------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 270 QKAVGP----------------------------------EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHCH----------------------------------HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHCC----------------------------------CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
T ss_conf 998195----------------------------------2105589999999858995899999998799999972744
Q ss_pred ---HCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf ---007999999998630899956898985101577511-2443277799999942047993589999999999851289
Q 000696 1044 ---DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1349)
Q Consensus 1044 ---~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~~~~~lL~all~~L~d~~~~V~leAm~~L~~iL~~l~ 1119 (1349)
....+.++..+...++|+++.||..++..|+.++.. ......+.+++.+...+.|.++.|+..++.+|+.+....+
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 43657999999999998619988999999999999988862767888899999998379836899999998999997549
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 68750258867753138677799578999999999853027986068799999954667987415899469999999999
Q 000696 1120 KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1199 (1349)
Q Consensus 1120 ~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1199 (1349)
.... ...+...+..+++|.+..+|.+++..+|.++...+.. .+.+++ ++.++-.|+|+++.|+.++-.++.
T Consensus 396 ~~~~---~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l---~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 396 IRQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKL---NSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHH---HHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH---HHHHHH---HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8989---8888999999835998139999999999999880989---899999---999998825981999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 44022335566432035677788898599999999999995932199999999875209993688999999975301592
Q 000696 1200 QVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1279 (1349)
Q Consensus 1200 ~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~ 1279 (1349)
.++..++.. .+... ++.......+++...+|.+|+..+|.+....+
T Consensus 467 ~l~~~~~~~-------------------~~~~~---------------llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 467 KLVEKFGKE-------------------WAHAT---------------IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHCHH-------------------HHHHH---------------THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCH-------------------HHHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999996844-------------------57888---------------99999998318987999999999999997669
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 3554101699999999998542998037899999999999861
Q 000696 1280 DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1322 (1349)
Q Consensus 1280 ~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~~~~ 1322 (1349)
.+. ..+.+...|.. +++|+++.||..|..+++.+.+..
T Consensus 513 ~~~----~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 513 QDI----TTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHH----HHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred HHH----HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899----99999999986-678998627999999999999986
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=117.63 Aligned_cols=213 Identities=10% Similarity=0.049 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCC--CCH
Q ss_conf 9999999997764109521799999994421145-756418899999985106787-000799999999863089--995
Q 000696 988 WINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSD--ESP 1063 (1349)
Q Consensus 988 ~~~gV~~LAr~l~~~~~~~i~~i~~~L~~~L~s~-~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D--~~~ 1063 (1349)
....++.++..+-..-.++++.++..+.+.+.+. +...|..|+..++.+...... .....+.++..+.+.+.+ .+.
T Consensus 628 a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHR 707 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999999999876099999999999999875865087999999999999998878546459999999999748712338
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC----H-------HHHHHHHHHHHHHHCCCCC---------
Q ss_conf 6898985101577511---244327779999994204799----3-------5899999999998512896---------
Q 000696 1064 TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD----E-------SVQLTAVSCLLTILKSSSK--------- 1120 (1349)
Q Consensus 1064 ~VR~lalrGLgnl~~~---kv~~~~~~lL~all~~L~d~~----~-------~V~leAm~~L~~iL~~l~~--------- 1120 (1349)
.+|..++..+|+++.. ....|.+.+++.+..++.+.. + .++..++.++..++..++.
T Consensus 708 ~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~ 787 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDV 787 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 76399999999999970352799999999999999855589997588999999999999999999999745755555438
Q ss_pred CCCCHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH
Q ss_conf 875025886775313867779--957899999999985302798-6068799999954667987-415899469999999
Q 000696 1121 DAVEPILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVG-SQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRN 1196 (1349)
Q Consensus 1121 ~~~~~~~~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~-~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~ 1196 (1349)
..+.+++..+..-+....+|+ ++.+|.+|+..+|+++...++ .....+.++ .+.+|+- .+.|+++.|++++.+
T Consensus 788 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~---~i~~ll~~~l~~~~~~~r~~a~~ 864 (876)
T 1qgr_A 788 MLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARP---MIHELLTEGRRSKTNKAKTLARW 864 (876)
T ss_dssp GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSH---HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCH---HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999999999999986588888899999999999999882848899997048---99999998754688768999999
Q ss_pred HHHHHHH
Q ss_conf 9994402
Q 000696 1197 TLKQVAP 1203 (1349)
Q Consensus 1197 tL~~~a~ 1203 (1349)
+++.++.
T Consensus 865 a~~~~~~ 871 (876)
T 1qgr_A 865 ATKELRK 871 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
Done!