Query 000697
Match_columns 1348
No_of_seqs 962 out of 2541
Neff 7.4
Searched_HMMs 46136
Date Mon Apr 1 22:13:20 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1517 Guanine nucleotide bin 100.0 2E-295 5E-300 2578.3 83.9 1311 3-1348 1-1379(1387)
2 PF14538 Raptor_N: Raptor N-te 100.0 1.9E-62 4.1E-67 501.7 17.0 153 101-253 1-153 (154)
3 KOG1517 Guanine nucleotide bin 100.0 9.2E-56 2E-60 529.0 39.2 794 374-1302 448-1382(1387)
4 KOG0271 Notchless-like WD40 re 100.0 2.8E-36 6E-41 330.7 25.4 286 1032-1348 112-437 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-36 9E-41 334.1 23.9 282 1035-1348 175-458 (459)
6 KOG0286 G-protein beta subunit 100.0 2.8E-33 6.1E-38 299.1 35.9 288 1030-1348 50-343 (343)
7 KOG0271 Notchless-like WD40 re 100.0 2E-34 4.3E-39 316.2 24.6 284 1034-1348 156-479 (480)
8 KOG0284 Polyadenylation factor 100.0 1.5E-31 3.2E-36 296.5 17.9 281 1034-1348 95-378 (464)
9 KOG0315 G-protein beta subunit 100.0 7.3E-30 1.6E-34 267.5 28.8 269 1048-1348 11-286 (311)
10 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-30 2.3E-35 291.2 18.9 241 1034-1299 216-458 (459)
11 KOG0295 WD40 repeat-containing 100.0 8E-30 1.7E-34 279.7 25.0 284 1034-1348 107-404 (406)
12 KOG0279 G protein beta subunit 100.0 2.8E-28 6.2E-33 259.8 31.0 289 1032-1348 12-311 (315)
13 cd00200 WD40 WD40 domain, foun 100.0 1.7E-27 3.6E-32 267.0 37.9 282 1033-1348 7-289 (289)
14 KOG0273 Beta-transducin family 100.0 4.6E-28 1E-32 273.0 31.6 279 1035-1348 235-521 (524)
15 KOG0276 Vesicle coat complex C 100.0 2E-28 4.3E-33 282.4 26.6 283 1034-1346 12-295 (794)
16 KOG0265 U5 snRNP-specific prot 100.0 5.6E-28 1.2E-32 259.8 28.1 280 1033-1346 45-334 (338)
17 KOG0285 Pleiotropic regulator 100.0 2.9E-28 6.2E-33 265.9 26.1 286 1033-1348 149-437 (460)
18 KOG0291 WD40-repeat-containing 100.0 1.8E-27 4E-32 279.8 32.9 288 1036-1348 308-610 (893)
19 KOG0273 Beta-transducin family 100.0 9.7E-28 2.1E-32 270.4 28.2 282 1034-1348 177-480 (524)
20 KOG0291 WD40-repeat-containing 100.0 3.9E-27 8.5E-32 277.1 33.9 287 1028-1348 258-548 (893)
21 PLN00181 protein SPA1-RELATED; 100.0 2.3E-26 4.9E-31 301.0 41.7 290 1034-1348 482-791 (793)
22 KOG0266 WD40 repeat-containing 100.0 4.5E-27 9.7E-32 287.7 32.7 286 1034-1348 158-452 (456)
23 KOG0263 Transcription initiati 100.0 3.8E-28 8.3E-33 289.7 21.3 269 1035-1348 378-647 (707)
24 KOG0315 G-protein beta subunit 100.0 1.9E-26 4.1E-31 242.0 29.4 253 1036-1310 41-298 (311)
25 KOG0286 G-protein beta subunit 100.0 2.3E-26 5E-31 246.4 27.8 250 1025-1299 77-343 (343)
26 KOG0319 WD40-repeat-containing 100.0 6.8E-27 1.5E-31 275.6 25.4 297 1027-1348 97-533 (775)
27 KOG0292 Vesicle coat complex C 100.0 9.8E-27 2.1E-31 276.4 26.6 281 1035-1344 9-316 (1202)
28 KOG0279 G protein beta subunit 100.0 2.9E-26 6.3E-31 244.6 27.3 254 1068-1348 6-260 (315)
29 KOG0282 mRNA splicing factor [ 100.0 1.4E-27 3E-32 270.5 17.9 288 1027-1348 207-503 (503)
30 KOG0645 WD40 repeat protein [G 100.0 1.1E-25 2.5E-30 239.1 31.1 289 1033-1348 12-309 (312)
31 KOG0293 WD40 repeat-containing 99.9 1.1E-26 2.3E-31 257.6 23.9 282 1033-1348 222-511 (519)
32 KOG0316 Conserved WD40 repeat- 99.9 3.6E-26 7.7E-31 238.0 25.1 277 1033-1347 15-296 (307)
33 KOG0284 Polyadenylation factor 99.9 1.5E-27 3.3E-32 264.7 15.1 242 1033-1299 136-378 (464)
34 KOG0281 Beta-TrCP (transducin 99.9 3.5E-27 7.7E-32 255.9 14.2 275 1035-1348 197-475 (499)
35 KOG0285 Pleiotropic regulator 99.9 2.6E-26 5.6E-31 250.7 20.4 244 1069-1348 143-387 (460)
36 KOG0318 WD40 repeat stress pro 99.9 1.2E-24 2.6E-29 248.1 34.7 290 1033-1348 188-558 (603)
37 KOG0296 Angio-associated migra 99.9 4.3E-25 9.4E-30 242.9 30.0 287 1032-1348 61-396 (399)
38 KOG0319 WD40-repeat-containing 99.9 1.6E-25 3.5E-30 264.1 26.7 284 1035-1348 323-617 (775)
39 KOG0275 Conserved WD40 repeat- 99.9 1.8E-26 3.9E-31 248.1 16.7 281 1036-1348 214-507 (508)
40 KOG0277 Peroxisomal targeting 99.9 2.9E-25 6.2E-30 233.8 21.9 284 1038-1348 11-307 (311)
41 KOG0265 U5 snRNP-specific prot 99.9 6.2E-25 1.4E-29 236.4 23.3 249 1071-1348 41-294 (338)
42 KOG0263 Transcription initiati 99.9 5.3E-25 1.1E-29 263.0 24.8 253 1052-1338 426-703 (707)
43 KOG0313 Microtubule binding pr 99.9 2.1E-24 4.5E-29 238.4 27.4 283 1034-1348 104-416 (423)
44 KOG0310 Conserved WD40 repeat- 99.9 1.6E-24 3.6E-29 246.3 25.9 277 1035-1346 26-305 (487)
45 KOG0278 Serine/threonine kinas 99.9 3.1E-25 6.7E-30 232.5 17.7 279 1032-1347 11-294 (334)
46 KOG0281 Beta-TrCP (transducin 99.9 1.1E-25 2.4E-30 244.3 14.8 243 1025-1301 217-477 (499)
47 KOG0643 Translation initiation 99.9 7.1E-24 1.5E-28 224.7 27.2 280 1033-1347 8-314 (327)
48 KOG0641 WD40 repeat protein [G 99.9 2E-23 4.3E-28 215.5 28.6 292 1035-1348 32-347 (350)
49 KOG0268 Sof1-like rRNA process 99.9 4.2E-25 9.2E-30 242.2 15.1 280 1032-1348 63-343 (433)
50 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-22 3.5E-27 220.4 34.5 283 1032-1347 11-300 (311)
51 PLN00181 protein SPA1-RELATED; 99.9 3.4E-23 7.4E-28 271.1 35.2 266 1056-1348 457-736 (793)
52 KOG0316 Conserved WD40 repeat- 99.9 4.5E-24 9.8E-29 222.4 20.8 245 1069-1348 9-255 (307)
53 KOG0306 WD40-repeat-containing 99.9 1.5E-23 3.3E-28 246.9 27.2 280 1034-1348 372-662 (888)
54 KOG0288 WD40 repeat protein Ti 99.9 1.6E-24 3.4E-29 241.4 17.9 279 1034-1348 174-459 (459)
55 KOG0318 WD40 repeat stress pro 99.9 1.2E-22 2.7E-27 231.8 32.9 282 1032-1348 56-348 (603)
56 KOG1407 WD40 repeat protein [F 99.9 4.5E-23 9.8E-28 218.2 26.8 277 1035-1347 20-308 (313)
57 KOG0276 Vesicle coat complex C 99.9 9.6E-24 2.1E-28 244.0 22.8 245 1072-1348 8-255 (794)
58 KOG0300 WD40 repeat-containing 99.9 1.9E-23 4E-28 224.7 22.7 294 1033-1348 146-474 (481)
59 KOG0645 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 213.8 30.6 249 1069-1347 6-258 (312)
60 KOG0282 mRNA splicing factor [ 99.9 2.6E-24 5.6E-29 244.1 16.3 251 1067-1348 204-460 (503)
61 KOG0292 Vesicle coat complex C 99.9 8.2E-24 1.8E-28 251.8 21.2 241 1081-1348 10-278 (1202)
62 KOG0295 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 231.3 20.8 245 1030-1299 145-404 (406)
63 KOG0266 WD40 repeat-containing 99.9 5.5E-23 1.2E-27 251.8 29.1 248 1032-1301 200-454 (456)
64 KOG0973 Histone transcription 99.9 8.9E-23 1.9E-27 251.3 28.7 297 1028-1347 6-352 (942)
65 cd00200 WD40 WD40 domain, foun 99.9 3.9E-22 8.5E-27 223.4 31.8 240 1034-1299 50-289 (289)
66 KOG0283 WD40 repeat-containing 99.9 2.9E-23 6.2E-28 250.3 23.0 291 1032-1348 264-574 (712)
67 KOG0289 mRNA splicing factor [ 99.9 1.6E-22 3.5E-27 226.3 27.0 280 1036-1348 220-504 (506)
68 KOG0313 Microtubule binding pr 99.9 7.7E-23 1.7E-27 226.0 22.7 261 1022-1299 122-416 (423)
69 KOG0772 Uncharacterized conser 99.9 5.8E-23 1.3E-27 233.4 22.0 295 1034-1347 166-484 (641)
70 KOG1036 Mitotic spindle checkp 99.9 7.6E-22 1.6E-26 214.0 27.9 270 1034-1340 12-294 (323)
71 KOG0274 Cdc4 and related F-box 99.9 3.9E-22 8.5E-27 244.2 28.9 271 1035-1348 208-480 (537)
72 PTZ00421 coronin; Provisional 99.9 3.9E-21 8.4E-26 235.2 35.5 271 1037-1332 22-315 (493)
73 KOG0277 Peroxisomal targeting 99.9 5.7E-23 1.2E-27 216.6 16.5 244 1035-1299 60-307 (311)
74 PTZ00420 coronin; Provisional 99.9 6E-21 1.3E-25 234.5 35.2 256 1053-1333 50-319 (568)
75 KOG0305 Anaphase promoting com 99.9 1.4E-21 3E-26 231.2 28.3 273 1038-1348 180-459 (484)
76 KOG0296 Angio-associated migra 99.9 3.6E-21 7.8E-26 212.2 27.2 241 1034-1300 105-397 (399)
77 KOG0647 mRNA export protein (c 99.9 3.6E-21 7.8E-26 207.7 26.0 270 1034-1338 26-311 (347)
78 KOG0640 mRNA cleavage stimulat 99.9 1.3E-21 2.8E-26 210.6 21.2 286 1032-1347 109-423 (430)
79 KOG0305 Anaphase promoting com 99.9 2.5E-21 5.4E-26 229.1 25.3 241 1035-1302 217-462 (484)
80 KOG0293 WD40 repeat-containing 99.9 9.4E-22 2E-26 218.6 19.2 246 1033-1301 267-513 (519)
81 KOG0264 Nucleosome remodeling 99.9 1.7E-21 3.7E-26 220.9 21.6 256 1033-1302 122-405 (422)
82 KOG0299 U3 snoRNP-associated p 99.9 6.4E-21 1.4E-25 215.7 25.6 274 1032-1339 139-444 (479)
83 KOG0308 Conserved WD40 repeat- 99.9 8.5E-22 1.8E-26 229.7 18.9 279 1040-1348 29-325 (735)
84 KOG0264 Nucleosome remodeling 99.9 2.6E-21 5.7E-26 219.3 21.7 254 1081-1348 125-402 (422)
85 KOG0639 Transducin-like enhanc 99.9 2.7E-21 5.8E-26 218.7 21.4 282 1032-1347 416-701 (705)
86 KOG0306 WD40-repeat-containing 99.9 7.2E-21 1.6E-25 224.6 25.3 265 1022-1303 391-666 (888)
87 KOG0278 Serine/threonine kinas 99.9 5.8E-22 1.3E-26 208.1 14.2 240 1033-1301 57-297 (334)
88 PTZ00421 coronin; Provisional 99.9 7.1E-20 1.5E-24 224.1 34.4 228 1032-1282 72-314 (493)
89 KOG0275 Conserved WD40 repeat- 99.9 1.5E-21 3.3E-26 210.4 16.2 243 1035-1299 263-507 (508)
90 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-19 2.3E-24 198.6 30.6 246 1071-1348 8-260 (311)
91 KOG0301 Phospholipase A2-activ 99.9 2.1E-20 4.6E-25 219.7 26.4 273 1032-1348 11-286 (745)
92 KOG0274 Cdc4 and related F-box 99.9 2.6E-20 5.7E-25 228.3 26.4 241 1034-1308 248-490 (537)
93 KOG2055 WD40 repeat protein [G 99.9 3.1E-20 6.6E-25 209.8 24.4 286 1035-1348 213-510 (514)
94 KOG0310 Conserved WD40 repeat- 99.9 1.8E-20 3.9E-25 213.6 22.3 239 1035-1299 68-307 (487)
95 KOG1539 WD repeat protein [Gen 99.9 2E-19 4.2E-24 215.1 31.3 287 1036-1348 245-646 (910)
96 KOG0647 mRNA export protein (c 99.9 6.9E-20 1.5E-24 197.8 24.8 255 1071-1348 18-279 (347)
97 KOG0643 Translation initiation 99.9 5E-20 1.1E-24 195.7 23.0 249 1033-1301 50-317 (327)
98 KOG1407 WD40 repeat protein [F 99.9 4.9E-20 1.1E-24 195.3 21.8 242 1071-1346 14-257 (313)
99 KOG0269 WD40 repeat-containing 99.8 2.2E-20 4.8E-25 221.7 20.6 295 1025-1345 29-335 (839)
100 PTZ00420 coronin; Provisional 99.8 3.4E-19 7.3E-24 219.2 30.6 222 1100-1348 50-291 (568)
101 KOG0294 WD40 repeat-containing 99.8 3.5E-19 7.6E-24 193.4 26.1 242 1032-1303 40-283 (362)
102 KOG0308 Conserved WD40 repeat- 99.8 3.9E-20 8.4E-25 216.0 19.8 238 1091-1346 34-281 (735)
103 KOG0650 WD40 repeat nucleolar 99.8 1.5E-19 3.2E-24 209.1 24.1 294 1032-1348 397-733 (733)
104 KOG0288 WD40 repeat protein Ti 99.8 1.1E-20 2.4E-25 210.9 14.0 248 1070-1348 168-415 (459)
105 KOG0269 WD40 repeat-containing 99.8 2.1E-20 4.5E-25 222.0 17.0 244 1082-1348 41-294 (839)
106 KOG0270 WD40 repeat-containing 99.8 2E-19 4.4E-24 202.9 24.0 250 1083-1348 176-447 (463)
107 KOG1332 Vesicle coat complex C 99.8 8.7E-20 1.9E-24 191.8 19.3 259 1030-1303 6-290 (299)
108 KOG0299 U3 snoRNP-associated p 99.8 2.1E-19 4.6E-24 203.4 22.7 244 1032-1299 199-454 (479)
109 KOG0641 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 178.4 28.1 250 1030-1302 84-350 (350)
110 KOG0640 mRNA cleavage stimulat 99.8 1.3E-19 2.8E-24 195.2 19.5 225 1071-1310 106-345 (430)
111 KOG1274 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 211.1 29.6 276 1033-1344 11-294 (933)
112 KOG4283 Transcription-coupled 99.8 1.1E-18 2.3E-23 187.4 25.3 292 1028-1348 36-363 (397)
113 KOG2048 WD40 repeat protein [G 99.8 3E-18 6.6E-23 201.7 31.5 291 1029-1346 19-315 (691)
114 KOG1408 WD40 repeat protein [F 99.8 3.6E-19 7.7E-24 208.1 23.4 274 1049-1348 394-711 (1080)
115 KOG2096 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 190.2 24.3 292 1033-1347 84-399 (420)
116 KOG0772 Uncharacterized conser 99.8 1.9E-19 4.2E-24 205.0 20.6 255 1072-1348 162-443 (641)
117 KOG0294 WD40 repeat-containing 99.8 1E-18 2.2E-23 189.8 25.1 260 1049-1348 3-279 (362)
118 KOG0646 WD40 repeat protein [G 99.8 2.2E-19 4.7E-24 203.8 19.4 240 1035-1288 81-336 (476)
119 KOG1332 Vesicle coat complex C 99.8 3.1E-19 6.8E-24 187.7 18.1 252 1081-1348 12-284 (299)
120 KOG1036 Mitotic spindle checkp 99.8 2.1E-18 4.5E-23 187.5 24.8 244 1076-1348 9-260 (323)
121 KOG1539 WD repeat protein [Gen 99.8 9E-18 1.9E-22 201.1 32.0 305 1025-1348 182-604 (910)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.5E-17 7.6E-22 188.1 35.4 263 1047-1348 1-277 (300)
123 KOG4328 WD40 protein [Function 99.8 1.7E-18 3.6E-23 195.9 23.2 290 1034-1348 185-493 (498)
124 KOG0973 Histone transcription 99.8 1.7E-18 3.7E-23 213.9 25.2 247 1032-1301 66-355 (942)
125 KOG0267 Microtubule severing p 99.8 3.2E-20 7E-25 218.7 9.6 257 1045-1341 2-259 (825)
126 KOG0289 mRNA splicing factor [ 99.8 2.1E-18 4.6E-23 193.6 23.3 239 1081-1347 220-459 (506)
127 KOG0646 WD40 repeat protein [G 99.8 3E-18 6.5E-23 194.6 23.6 267 1055-1348 16-305 (476)
128 KOG2445 Nuclear pore complex c 99.8 1.8E-17 3.9E-22 179.6 27.9 275 1028-1310 6-331 (361)
129 KOG2106 Uncharacterized conser 99.8 3.1E-17 6.8E-22 186.8 31.1 275 1036-1348 201-519 (626)
130 KOG0283 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 209.7 21.5 255 1070-1348 259-530 (712)
131 KOG1408 WD40 repeat protein [F 99.8 1.5E-18 3.2E-23 203.1 19.6 247 1036-1301 460-713 (1080)
132 KOG0307 Vesicle coat complex C 99.8 3.1E-19 6.7E-24 221.0 14.4 287 1037-1348 8-325 (1049)
133 KOG0301 Phospholipase A2-activ 99.8 4.9E-18 1.1E-22 200.1 22.4 242 1068-1348 5-247 (745)
134 KOG1273 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 176.7 26.1 279 1038-1348 26-320 (405)
135 KOG1063 RNA polymerase II elon 99.8 2.8E-17 6E-22 193.6 26.1 299 1033-1348 189-646 (764)
136 KOG0321 WD40 repeat-containing 99.8 1.8E-17 4E-22 193.5 23.3 285 1038-1348 52-389 (720)
137 KOG2106 Uncharacterized conser 99.8 1.4E-16 3E-21 181.6 29.7 294 1022-1347 131-474 (626)
138 KOG1188 WD40 repeat protein [G 99.8 1.4E-17 3E-22 182.9 20.6 287 1047-1348 40-344 (376)
139 KOG0300 WD40 repeat-containing 99.8 2.8E-17 6E-22 177.5 20.4 247 1068-1348 139-426 (481)
140 KOG1274 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 196.0 25.7 238 1081-1348 14-260 (933)
141 KOG0267 Microtubule severing p 99.8 1.1E-18 2.3E-23 206.1 10.0 240 1028-1293 17-260 (825)
142 KOG2445 Nuclear pore complex c 99.8 1.9E-16 4.2E-21 171.7 26.5 257 1081-1348 14-316 (361)
143 KOG0268 Sof1-like rRNA process 99.8 6.7E-18 1.5E-22 186.0 14.9 247 1022-1300 86-344 (433)
144 KOG0302 Ribosome Assembly prot 99.7 3.5E-17 7.6E-22 181.3 19.1 252 1081-1343 152-432 (440)
145 KOG1538 Uncharacterized conser 99.7 1.1E-16 2.4E-21 186.0 23.9 282 1030-1348 7-291 (1081)
146 KOG0639 Transducin-like enhanc 99.7 2.1E-17 4.5E-22 187.5 17.0 251 1023-1300 438-703 (705)
147 KOG1240 Protein kinase contain 99.7 1.9E-13 4.2E-18 169.7 52.5 272 1062-1348 1034-1332(1431)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.8E-15 6.2E-20 172.3 34.9 259 1036-1330 31-300 (300)
149 KOG4378 Nuclear protein COP1 [ 99.7 1E-16 2.2E-21 181.9 20.3 269 1051-1348 6-278 (673)
150 KOG4283 Transcription-coupled 99.7 1.6E-16 3.4E-21 170.9 20.5 207 1081-1300 44-275 (397)
151 KOG0321 WD40 repeat-containing 99.7 1.4E-16 3E-21 186.3 21.1 258 1033-1300 98-390 (720)
152 KOG0302 Ribosome Assembly prot 99.7 2.4E-16 5.1E-21 174.8 20.8 245 1034-1298 150-435 (440)
153 KOG2919 Guanine nucleotide-bin 99.7 6.3E-16 1.4E-20 168.4 23.3 282 1037-1341 51-361 (406)
154 KOG2096 WD40 repeat protein [G 99.7 4.1E-16 8.8E-21 169.3 21.7 255 1071-1347 80-357 (420)
155 KOG2048 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 180.0 27.1 237 1081-1347 26-272 (691)
156 KOG4328 WD40 protein [Function 99.7 3.5E-16 7.5E-21 177.3 21.6 259 1071-1348 180-448 (498)
157 KOG4378 Nuclear protein COP1 [ 99.7 3.1E-16 6.8E-21 178.0 20.3 265 1036-1332 35-305 (673)
158 KOG0649 WD40 repeat protein [G 99.7 7.6E-15 1.6E-19 154.5 26.7 277 1038-1347 13-313 (325)
159 KOG4227 WD40 repeat protein [G 99.7 2.6E-15 5.5E-20 166.0 22.9 291 1033-1348 54-385 (609)
160 KOG0642 Cell-cycle nuclear pro 99.7 2.9E-16 6.4E-21 182.1 15.6 251 1034-1302 293-562 (577)
161 KOG0270 WD40 repeat-containing 99.7 1.4E-15 2.9E-20 172.3 18.9 244 1036-1300 174-448 (463)
162 KOG2055 WD40 repeat protein [G 99.7 2.3E-15 5E-20 170.8 20.4 241 1078-1346 211-463 (514)
163 KOG1063 RNA polymerase II elon 99.7 1.4E-14 3E-19 171.2 26.8 294 1032-1347 51-388 (764)
164 KOG0307 Vesicle coat complex C 99.7 3.4E-16 7.5E-21 194.3 13.9 249 1035-1302 64-328 (1049)
165 COG2319 FOG: WD40 repeat [Gene 99.7 3.7E-13 8E-18 158.4 38.3 287 1032-1348 62-357 (466)
166 KOG1009 Chromatin assembly com 99.7 1.5E-14 3.2E-19 162.4 24.1 294 1029-1346 9-368 (434)
167 KOG1273 WD40 repeat protein [G 99.6 5.8E-15 1.3E-19 160.4 19.7 246 1083-1348 26-278 (405)
168 KOG1034 Transcriptional repres 99.6 6.8E-15 1.5E-19 161.0 20.3 290 1033-1348 36-381 (385)
169 KOG1007 WD repeat protein TSSC 99.6 8.3E-15 1.8E-19 157.6 20.1 250 1035-1301 63-361 (370)
170 KOG0290 Conserved WD40 repeat- 99.6 4.8E-14 1E-18 152.0 24.2 292 1035-1340 44-356 (364)
171 KOG1007 WD repeat protein TSSC 99.6 4.8E-14 1E-18 151.8 21.7 281 1049-1346 28-357 (370)
172 KOG1034 Transcriptional repres 99.6 1.7E-14 3.6E-19 158.0 17.3 248 1034-1299 88-381 (385)
173 KOG1587 Cytoplasmic dynein int 99.6 9.8E-14 2.1E-18 169.4 25.9 272 1057-1348 222-514 (555)
174 COG2319 FOG: WD40 repeat [Gene 99.6 2.1E-12 4.6E-17 151.9 36.7 276 1037-1348 111-398 (466)
175 KOG0644 Uncharacterized conser 99.6 3.4E-15 7.3E-20 178.3 12.1 272 1034-1347 189-465 (1113)
176 KOG1240 Protein kinase contain 99.6 1.9E-13 4.2E-18 169.7 27.5 300 1034-1348 1047-1431(1431)
177 KOG1445 Tumor-specific antigen 99.6 7.9E-14 1.7E-18 161.9 22.6 112 1228-1348 629-748 (1012)
178 KOG0322 G-protein beta subunit 99.6 3.1E-14 6.6E-19 151.9 16.8 287 1033-1348 12-321 (323)
179 KOG2919 Guanine nucleotide-bin 99.6 4.4E-14 9.6E-19 154.1 18.2 246 1036-1292 105-361 (406)
180 KOG1334 WD40 repeat protein [G 99.6 7.9E-15 1.7E-19 167.3 12.7 295 1032-1348 139-464 (559)
181 KOG0650 WD40 repeat nucleolar 99.6 1.2E-13 2.6E-18 160.6 19.6 242 1071-1347 394-677 (733)
182 KOG1272 WD40-repeat-containing 99.5 3.9E-14 8.5E-19 160.9 12.1 275 1030-1343 123-402 (545)
183 KOG0642 Cell-cycle nuclear pro 99.5 1E-13 2.3E-18 161.2 15.5 253 1072-1348 289-559 (577)
184 KOG1587 Cytoplasmic dynein int 99.5 1.1E-12 2.3E-17 160.4 25.1 257 1036-1301 243-516 (555)
185 PRK11028 6-phosphogluconolacto 99.5 1.6E-11 3.5E-16 144.9 33.4 270 1051-1348 6-302 (330)
186 KOG1524 WD40 repeat-containing 99.5 6.1E-13 1.3E-17 152.8 18.3 265 1033-1346 12-282 (737)
187 KOG0303 Actin-binding protein 99.5 1E-12 2.3E-17 146.8 19.6 216 1071-1304 75-297 (472)
188 KOG2321 WD40 repeat protein [G 99.5 6E-12 1.3E-16 146.3 24.5 277 1034-1346 50-339 (703)
189 KOG2110 Uncharacterized conser 99.5 1.1E-11 2.3E-16 138.5 25.5 235 1081-1348 6-246 (391)
190 KOG0771 Prolactin regulatory e 99.5 8E-12 1.7E-16 141.9 23.6 193 1139-1346 148-350 (398)
191 KOG1963 WD40 repeat protein [G 99.5 3.2E-11 6.9E-16 147.4 30.1 288 1034-1348 204-536 (792)
192 KOG0290 Conserved WD40 repeat- 99.4 6.9E-12 1.5E-16 135.6 21.3 258 1067-1348 35-316 (364)
193 KOG0303 Actin-binding protein 99.4 4E-12 8.7E-17 142.2 20.0 230 1032-1282 78-320 (472)
194 PRK11028 6-phosphogluconolacto 99.4 5.8E-11 1.3E-15 140.2 30.8 249 1036-1301 35-304 (330)
195 KOG2110 Uncharacterized conser 99.4 1.8E-10 3.8E-15 128.9 29.2 234 1036-1301 6-248 (391)
196 KOG1963 WD40 repeat protein [G 99.4 3.7E-11 7.9E-16 146.9 26.0 279 1042-1346 23-318 (792)
197 KOG1188 WD40 repeat protein [G 99.4 4.2E-12 9.1E-17 140.3 16.2 186 1148-1348 41-240 (376)
198 KOG1354 Serine/threonine prote 99.4 4.5E-11 9.9E-16 131.9 23.6 257 1036-1300 26-358 (433)
199 KOG1523 Actin-related protein 99.4 4.2E-11 9.1E-16 131.5 22.5 230 1035-1281 10-259 (361)
200 KOG0649 WD40 repeat protein [G 99.4 7.1E-11 1.5E-15 125.0 23.4 236 1032-1299 59-314 (325)
201 KOG4227 WD40 repeat protein [G 99.4 1E-11 2.2E-16 137.9 17.8 260 1072-1348 51-320 (609)
202 KOG1445 Tumor-specific antigen 99.4 1.1E-11 2.4E-16 144.4 18.0 245 1043-1303 587-846 (1012)
203 KOG1009 Chromatin assembly com 99.4 6.2E-11 1.3E-15 133.7 22.7 253 1032-1306 62-377 (434)
204 KOG3881 Uncharacterized conser 99.3 4.6E-11 9.9E-16 134.3 20.5 246 1036-1302 56-321 (412)
205 KOG1310 WD40 repeat protein [G 99.3 1.6E-11 3.4E-16 141.8 16.7 219 1032-1261 47-306 (758)
206 KOG1538 Uncharacterized conser 99.3 2.1E-11 4.5E-16 142.8 17.8 228 1082-1347 14-249 (1081)
207 PRK01742 tolB translocation pr 99.3 7.1E-11 1.5E-15 144.5 23.4 234 1056-1331 183-426 (429)
208 KOG0771 Prolactin regulatory e 99.3 1.3E-11 2.9E-16 140.1 15.3 201 1084-1302 148-355 (398)
209 KOG3881 Uncharacterized conser 99.3 1.1E-10 2.4E-15 131.3 21.4 250 1081-1348 56-318 (412)
210 KOG2139 WD40 repeat protein [G 99.3 7.1E-10 1.5E-14 123.4 26.1 294 1027-1347 93-428 (445)
211 KOG2111 Uncharacterized conser 99.3 9.3E-10 2E-14 121.2 25.8 237 1082-1348 7-254 (346)
212 KOG2111 Uncharacterized conser 99.3 3.6E-09 7.8E-14 116.6 29.3 238 1037-1302 7-257 (346)
213 KOG0322 G-protein beta subunit 99.3 6.3E-11 1.4E-15 126.9 15.3 145 1150-1300 168-322 (323)
214 KOG0974 WD-repeat protein WDR6 99.3 1.8E-10 3.8E-15 143.0 20.5 275 1037-1348 9-286 (967)
215 KOG4497 Uncharacterized conser 99.2 4.7E-10 1E-14 123.2 20.2 272 1040-1348 13-389 (447)
216 KOG1524 WD40 repeat-containing 99.2 1E-10 2.2E-15 134.9 15.7 171 1147-1339 75-245 (737)
217 KOG1523 Actin-related protein 99.2 5E-10 1.1E-14 123.2 20.1 231 1081-1333 11-262 (361)
218 KOG1310 WD40 repeat protein [G 99.2 9.6E-11 2.1E-15 135.4 15.1 170 1125-1300 44-230 (758)
219 KOG0644 Uncharacterized conser 99.2 9.7E-12 2.1E-16 149.3 6.8 240 1068-1348 181-424 (1113)
220 PRK01742 tolB translocation pr 99.2 8.4E-10 1.8E-14 135.1 23.5 215 1036-1282 204-426 (429)
221 PF02239 Cytochrom_D1: Cytochr 99.2 3.6E-09 7.8E-14 126.2 28.1 282 1039-1348 40-345 (369)
222 PRK03629 tolB translocation pr 99.2 9.7E-09 2.1E-13 125.6 30.4 236 1056-1331 178-428 (429)
223 KOG0280 Uncharacterized conser 99.2 1.9E-09 4.1E-14 117.5 20.3 271 1056-1347 45-330 (339)
224 KOG4497 Uncharacterized conser 99.2 9.2E-09 2E-13 113.2 25.5 274 1037-1343 50-425 (447)
225 KOG2394 WD40 protein DMR-N9 [G 99.2 1.1E-09 2.4E-14 127.1 19.2 171 1145-1330 183-384 (636)
226 KOG1334 WD40 repeat protein [G 99.1 5.3E-10 1.1E-14 128.5 15.1 255 1070-1348 135-422 (559)
227 PF08662 eIF2A: Eukaryotic tra 99.1 2.6E-09 5.6E-14 116.2 19.2 157 1140-1309 10-187 (194)
228 KOG1272 WD40-repeat-containing 99.1 1.6E-10 3.5E-15 131.9 10.1 229 1082-1348 131-360 (545)
229 KOG2394 WD40 protein DMR-N9 [G 99.1 3E-09 6.4E-14 123.6 18.7 248 1038-1307 126-458 (636)
230 PRK04922 tolB translocation pr 99.1 1.2E-08 2.7E-13 125.0 25.6 234 1057-1330 184-432 (433)
231 KOG1409 Uncharacterized conser 99.1 5.3E-09 1.2E-13 116.1 18.8 245 1035-1301 24-270 (404)
232 KOG2041 WD40 repeat protein [G 99.1 1.1E-08 2.4E-13 121.3 22.1 283 1035-1346 14-333 (1189)
233 PRK02889 tolB translocation pr 99.1 2.1E-08 4.6E-13 122.7 25.5 235 1057-1331 176-425 (427)
234 PRK05137 tolB translocation pr 99.1 6.3E-08 1.4E-12 118.9 29.6 234 1057-1331 182-433 (435)
235 KOG2139 WD40 repeat protein [G 99.0 2.7E-08 5.9E-13 111.1 22.2 237 1082-1341 100-366 (445)
236 KOG1354 Serine/threonine prote 99.0 2.1E-08 4.6E-13 111.2 19.0 258 1081-1348 26-357 (433)
237 PRK03629 tolB translocation pr 99.0 8.7E-08 1.9E-12 117.3 26.7 215 1036-1282 199-428 (429)
238 PF08662 eIF2A: Eukaryotic tra 99.0 2.6E-08 5.7E-13 108.4 19.1 144 1187-1348 12-177 (194)
239 PRK05137 tolB translocation pr 99.0 1.5E-07 3.2E-12 115.7 27.4 203 1104-1340 182-396 (435)
240 PRK02889 tolB translocation pr 98.9 1E-07 2.2E-12 116.7 25.3 191 1128-1342 192-392 (427)
241 PF02239 Cytochrom_D1: Cytochr 98.9 3.8E-07 8.2E-12 109.0 29.2 266 1048-1348 6-300 (369)
242 KOG2315 Predicted translation 98.9 1.4E-07 3.1E-12 111.0 24.3 277 1030-1348 69-388 (566)
243 PF10282 Lactonase: Lactonase, 98.9 4.2E-06 9.2E-11 99.6 36.7 276 1050-1348 2-320 (345)
244 KOG1064 RAVE (regulator of V-A 98.9 5.2E-09 1.1E-13 134.7 12.4 194 1036-1268 2209-2407(2439)
245 TIGR02800 propeller_TolB tol-p 98.9 4.5E-07 9.8E-12 110.6 29.1 223 1056-1310 169-406 (417)
246 KOG1064 RAVE (regulator of V-A 98.9 9.8E-09 2.1E-13 132.3 13.7 224 1082-1343 2210-2439(2439)
247 COG5170 CDC55 Serine/threonine 98.9 3.6E-08 7.9E-13 107.7 15.9 255 1035-1299 26-365 (460)
248 PRK04922 tolB translocation pr 98.9 2.2E-07 4.9E-12 114.0 24.7 203 1104-1340 184-398 (433)
249 KOG4547 WD40 repeat-containing 98.9 2.2E-07 4.7E-12 110.3 22.9 196 1092-1302 3-221 (541)
250 KOG4190 Uncharacterized conser 98.9 6.9E-09 1.5E-13 119.6 9.9 223 1069-1310 727-958 (1034)
251 PF10282 Lactonase: Lactonase, 98.8 9.6E-06 2.1E-10 96.6 36.8 252 1036-1300 37-321 (345)
252 KOG0280 Uncharacterized conser 98.8 1.8E-07 3.9E-12 102.4 19.1 249 1036-1299 70-331 (339)
253 KOG4547 WD40 repeat-containing 98.8 2E-07 4.3E-12 110.6 20.5 185 1147-1347 5-217 (541)
254 KOG2041 WD40 repeat protein [G 98.8 7.4E-08 1.6E-12 114.5 16.1 238 1081-1341 15-279 (1189)
255 PRK00178 tolB translocation pr 98.8 2.1E-06 4.5E-11 105.4 29.9 234 1058-1331 180-428 (430)
256 KOG2314 Translation initiation 98.8 1.4E-06 3.1E-11 102.0 25.3 274 1036-1342 250-559 (698)
257 KOG0974 WD-repeat protein WDR6 98.8 1.6E-07 3.5E-12 117.3 18.5 191 1092-1301 97-288 (967)
258 TIGR02800 propeller_TolB tol-p 98.8 1.7E-06 3.6E-11 105.7 26.9 205 1104-1342 170-386 (417)
259 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.8E-05 3.9E-10 93.0 33.4 274 1046-1348 11-328 (352)
260 KOG0309 Conserved WD40 repeat- 98.7 7.9E-08 1.7E-12 114.9 13.5 287 1035-1347 24-336 (1081)
261 KOG2321 WD40 repeat protein [G 98.7 2.2E-07 4.8E-12 109.0 17.0 205 1038-1260 136-345 (703)
262 PRK04792 tolB translocation pr 98.7 3.2E-06 6.9E-11 104.1 28.3 234 1058-1331 199-447 (448)
263 KOG2315 Predicted translation 98.7 1.2E-06 2.5E-11 103.5 22.4 241 1039-1308 129-397 (566)
264 KOG4714 Nucleoporin [Nuclear s 98.7 1.9E-07 4E-12 100.6 14.2 211 1093-1348 100-316 (319)
265 KOG1409 Uncharacterized conser 98.7 2.4E-07 5.2E-12 103.2 15.2 248 1068-1348 15-268 (404)
266 COG2706 3-carboxymuconate cycl 98.7 4.1E-05 8.8E-10 87.1 32.9 271 1056-1347 15-318 (346)
267 TIGR03300 assembly_YfgL outer 98.7 1.5E-05 3.3E-10 96.0 31.5 264 1046-1347 104-376 (377)
268 KOG0166 Karyopherin (importin) 98.7 1.2E-06 2.5E-11 105.3 21.0 260 441-723 82-353 (514)
269 PRK01029 tolB translocation pr 98.7 6.5E-06 1.4E-10 100.7 27.9 242 1057-1332 165-426 (428)
270 COG2706 3-carboxymuconate cycl 98.7 9.7E-05 2.1E-09 84.1 34.6 251 1036-1301 40-321 (346)
271 KOG4532 WD40-like repeat conta 98.6 4.2E-06 9E-11 90.7 22.2 263 1055-1340 50-322 (344)
272 PF04762 IKI3: IKI3 family; I 98.6 4.5E-05 9.8E-10 100.8 36.7 298 1034-1348 74-454 (928)
273 COG5354 Uncharacterized protei 98.6 1.1E-05 2.3E-10 94.4 26.9 275 1036-1348 72-393 (561)
274 COG5354 Uncharacterized protei 98.6 8.6E-06 1.9E-10 95.2 24.4 274 1036-1348 33-346 (561)
275 TIGR03300 assembly_YfgL outer 98.6 1.9E-05 4E-10 95.2 28.9 264 1046-1348 64-336 (377)
276 KOG0309 Conserved WD40 repeat- 98.6 2.6E-07 5.6E-12 110.6 12.1 246 1038-1301 70-339 (1081)
277 PF04762 IKI3: IKI3 family; I 98.6 3E-05 6.5E-10 102.4 31.7 288 1035-1341 120-507 (928)
278 PLN02919 haloacid dehalogenase 98.6 3.1E-05 6.7E-10 104.1 32.2 250 1084-1348 571-886 (1057)
279 PRK00178 tolB translocation pr 98.5 1.3E-05 2.7E-10 98.5 25.6 215 1036-1282 199-428 (430)
280 PLN02919 haloacid dehalogenase 98.5 7.3E-05 1.6E-09 100.6 33.6 255 1037-1303 569-890 (1057)
281 PRK04792 tolB translocation pr 98.5 1.7E-05 3.6E-10 97.8 25.1 214 1036-1281 218-446 (448)
282 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00024 5.2E-09 83.7 33.1 251 1037-1309 48-339 (352)
283 PRK01029 tolB translocation pr 98.5 3.9E-05 8.4E-10 94.0 26.8 190 1141-1347 190-400 (428)
284 COG4946 Uncharacterized protei 98.5 3.4E-05 7.5E-10 89.2 24.0 224 1092-1339 276-507 (668)
285 KOG4532 WD40-like repeat conta 98.4 2.4E-05 5.3E-10 84.9 21.4 236 1046-1301 83-331 (344)
286 COG5170 CDC55 Serine/threonine 98.4 4.6E-06 1E-10 91.6 15.3 256 1081-1347 27-364 (460)
287 KOG4190 Uncharacterized conser 98.4 8.4E-07 1.8E-11 102.9 9.9 281 1033-1346 733-1032(1034)
288 KOG1275 PAB-dependent poly(A) 98.4 2.5E-06 5.5E-11 105.0 13.9 272 1030-1348 49-340 (1118)
289 KOG2314 Translation initiation 98.3 8.9E-05 1.9E-09 87.5 24.5 277 1038-1348 213-523 (698)
290 PLN03200 cellulose synthase-in 98.3 3.4E-05 7.3E-10 105.9 24.0 241 461-724 446-726 (2102)
291 PRK09687 putative lyase; Provi 98.3 1.2E-05 2.7E-10 92.4 16.4 127 503-663 92-219 (280)
292 KOG0166 Karyopherin (importin) 98.3 1.8E-05 3.9E-10 95.3 18.0 239 459-721 150-393 (514)
293 PRK09687 putative lyase; Provi 98.3 1.1E-05 2.4E-10 92.7 15.2 166 500-719 53-219 (280)
294 PLN03200 cellulose synthase-in 98.3 5.2E-05 1.1E-09 104.1 23.6 240 460-723 487-766 (2102)
295 PF08450 SGL: SMP-30/Gluconola 98.3 0.00075 1.6E-08 76.3 29.6 219 1085-1338 4-243 (246)
296 KOG4714 Nucleoporin [Nuclear s 98.3 3E-06 6.4E-11 91.6 9.1 154 1146-1306 100-259 (319)
297 KOG1912 WD40 repeat protein [G 98.2 5.7E-05 1.2E-09 91.9 20.2 241 1038-1299 18-302 (1062)
298 PRK11138 outer membrane biogen 98.2 0.00055 1.2E-08 83.1 28.2 263 1046-1347 119-391 (394)
299 cd00020 ARM Armadillo/beta-cat 98.2 1.4E-05 3.1E-10 78.9 11.5 117 539-664 3-119 (120)
300 KOG2695 WD40 repeat protein [G 98.2 6.5E-06 1.4E-10 92.0 9.7 166 1149-1329 226-401 (425)
301 COG4946 Uncharacterized protei 98.2 0.00071 1.5E-08 78.7 26.0 171 1046-1246 331-506 (668)
302 KOG1912 WD40 repeat protein [G 98.1 0.00031 6.8E-09 85.7 23.4 311 1027-1348 101-549 (1062)
303 KOG3914 WD repeat protein WDR4 98.1 2.5E-05 5.5E-10 89.4 13.5 159 1036-1215 63-228 (390)
304 PF15492 Nbas_N: Neuroblastoma 98.1 0.0011 2.3E-08 73.8 25.5 235 1041-1302 3-260 (282)
305 PF15492 Nbas_N: Neuroblastoma 98.1 0.0017 3.7E-08 72.3 26.1 229 1091-1348 6-257 (282)
306 PF13360 PQQ_2: PQQ-like domai 98.1 0.0026 5.5E-08 71.1 28.6 223 1055-1305 1-235 (238)
307 KOG2114 Vacuolar assembly/sort 98.0 0.00069 1.5E-08 84.2 24.2 218 1042-1274 30-259 (933)
308 KOG3617 WD40 and TPR repeat-co 98.0 0.00013 2.9E-09 89.1 17.6 271 1038-1339 18-374 (1416)
309 KOG1832 HIV-1 Vpr-binding prot 98.0 6.1E-06 1.3E-10 100.7 5.3 214 1035-1288 1101-1318(1516)
310 KOG3914 WD repeat protein WDR4 98.0 8.4E-05 1.8E-09 85.3 13.9 159 1091-1268 71-232 (390)
311 cd00020 ARM Armadillo/beta-cat 97.9 7.1E-05 1.5E-09 73.9 11.5 117 497-622 3-119 (120)
312 PRK04043 tolB translocation pr 97.9 0.0039 8.4E-08 76.2 28.7 199 1082-1310 189-409 (419)
313 KOG1275 PAB-dependent poly(A) 97.9 0.0001 2.2E-09 91.4 14.6 183 1093-1299 146-340 (1118)
314 PF08450 SGL: SMP-30/Gluconola 97.9 0.011 2.3E-07 67.0 30.3 224 1040-1288 4-242 (246)
315 KOG2114 Vacuolar assembly/sort 97.9 0.00054 1.2E-08 85.0 20.5 194 1141-1348 29-241 (933)
316 COG5064 SRP1 Karyopherin (impo 97.9 0.0002 4.3E-09 80.2 14.4 256 436-722 82-357 (526)
317 PRK13800 putative oxidoreducta 97.9 0.00022 4.8E-09 95.2 17.2 152 459-664 650-803 (897)
318 KOG0882 Cyclophilin-related pe 97.8 0.00028 6.1E-09 81.6 14.3 252 1036-1310 10-314 (558)
319 PF00400 WD40: WD domain, G-be 97.8 6.9E-05 1.5E-09 58.8 6.5 38 1262-1299 2-39 (39)
320 PF13360 PQQ_2: PQQ-like domai 97.8 0.015 3.2E-07 64.9 27.7 182 1146-1348 35-228 (238)
321 PRK13800 putative oxidoreducta 97.7 0.00038 8.2E-09 93.0 16.5 147 462-664 622-770 (897)
322 KOG0882 Cyclophilin-related pe 97.7 0.0002 4.3E-09 82.9 11.3 208 1081-1307 10-238 (558)
323 COG5064 SRP1 Karyopherin (impo 97.7 0.00027 5.9E-09 79.2 11.8 234 461-720 157-397 (526)
324 PRK11138 outer membrane biogen 97.7 0.012 2.6E-07 71.5 27.5 225 1047-1299 160-392 (394)
325 KOG2695 WD40 repeat protein [G 97.7 0.00011 2.4E-09 82.5 8.7 151 1053-1219 230-384 (425)
326 KOG1920 IkappaB kinase complex 97.7 0.0077 1.7E-07 77.8 25.7 249 1036-1299 69-363 (1265)
327 KOG1008 Uncharacterized conser 97.7 2.3E-05 4.9E-10 93.9 3.2 233 1082-1332 58-315 (783)
328 KOG2160 Armadillo/beta-catenin 97.7 0.0013 2.8E-08 75.7 16.9 186 473-665 97-282 (342)
329 PF00400 WD40: WD domain, G-be 97.6 0.00013 2.8E-09 57.2 5.9 39 1302-1348 1-39 (39)
330 PRK04043 tolB translocation pr 97.6 0.012 2.6E-07 71.9 25.8 190 1037-1258 189-400 (419)
331 KOG1832 HIV-1 Vpr-binding prot 97.5 6.6E-05 1.4E-09 92.0 4.3 196 1070-1301 1094-1291(1516)
332 PF08553 VID27: VID27 cytoplas 97.5 0.0046 1E-07 79.3 20.6 208 1081-1299 431-645 (794)
333 KOG2066 Vacuolar assembly/sort 97.5 0.003 6.5E-08 78.3 17.6 176 1147-1346 49-229 (846)
334 KOG1920 IkappaB kinase complex 97.5 0.01 2.2E-07 76.8 22.8 200 1132-1347 69-319 (1265)
335 PF07433 DUF1513: Protein of u 97.5 0.073 1.6E-06 61.2 27.2 231 1037-1295 6-279 (305)
336 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.086 1.9E-06 58.0 25.9 80 1028-1113 45-124 (354)
337 PF04841 Vps16_N: Vps16, N-ter 97.4 0.15 3.3E-06 62.2 31.8 246 1030-1303 23-289 (410)
338 PF07433 DUF1513: Protein of u 97.4 0.03 6.5E-07 64.3 23.6 199 1141-1348 10-245 (305)
339 KOG2160 Armadillo/beta-catenin 97.4 0.0078 1.7E-07 69.5 18.9 155 503-666 85-241 (342)
340 KOG1008 Uncharacterized conser 97.4 0.00011 2.4E-09 88.2 3.7 249 1036-1299 57-333 (783)
341 KOG2066 Vacuolar assembly/sort 97.4 0.0059 1.3E-07 75.8 18.3 145 1045-1212 81-235 (846)
342 PF06977 SdiA-regulated: SdiA- 97.3 0.069 1.5E-06 60.3 25.3 212 1125-1347 15-247 (248)
343 KOG1645 RING-finger-containing 97.3 0.0071 1.5E-07 69.8 16.7 77 1033-1114 191-268 (463)
344 cd00216 PQQ_DH Dehydrogenases 97.3 0.11 2.3E-06 65.2 29.1 277 1047-1348 61-422 (488)
345 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.17 3.7E-06 55.8 26.0 145 1047-1212 23-167 (354)
346 KOG3621 WD40 repeat-containing 97.3 0.037 8E-07 68.3 23.0 163 1035-1211 33-198 (726)
347 PF13646 HEAT_2: HEAT repeats; 97.2 0.0013 2.8E-08 61.6 8.4 86 590-717 2-88 (88)
348 PF06433 Me-amine-dh_H: Methyl 97.2 0.17 3.7E-06 58.9 26.7 262 1057-1348 17-318 (342)
349 PF11768 DUF3312: Protein of u 97.2 0.24 5.1E-06 60.7 28.7 72 1225-1301 258-329 (545)
350 PF04053 Coatomer_WDAD: Coatom 97.2 0.082 1.8E-06 64.8 25.5 216 1082-1347 34-259 (443)
351 PTZ00429 beta-adaptin; Provisi 97.1 0.02 4.4E-07 74.0 20.3 140 502-665 69-208 (746)
352 PF08596 Lgl_C: Lethal giant l 97.1 0.11 2.3E-06 63.0 24.7 248 1037-1299 3-333 (395)
353 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.16 3.4E-06 60.9 25.7 272 1036-1339 43-346 (353)
354 cd00216 PQQ_DH Dehydrogenases 97.0 0.25 5.5E-06 61.8 28.4 237 1048-1310 111-434 (488)
355 PF10508 Proteasom_PSMB: Prote 97.0 0.02 4.3E-07 71.7 18.5 255 446-722 62-320 (503)
356 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0011 2.4E-08 56.5 4.9 55 608-663 1-55 (55)
357 KOG1645 RING-finger-containing 96.9 0.027 5.9E-07 65.1 16.7 153 1127-1289 189-349 (463)
358 PF03178 CPSF_A: CPSF A subuni 96.9 0.19 4.1E-06 59.3 24.9 222 1057-1298 2-262 (321)
359 PRK02888 nitrous-oxide reducta 96.9 0.13 2.9E-06 64.2 23.9 241 1041-1315 198-487 (635)
360 PF04053 Coatomer_WDAD: Coatom 96.9 0.14 3.1E-06 62.7 24.0 219 1036-1300 33-261 (443)
361 PF06977 SdiA-regulated: SdiA- 96.8 0.23 5E-06 56.2 23.3 202 1036-1252 22-244 (248)
362 PF11768 DUF3312: Protein of u 96.8 0.081 1.7E-06 64.6 20.3 93 1159-1260 238-331 (545)
363 PF12717 Cnd1: non-SMC mitotic 96.8 0.0038 8.3E-08 67.1 8.5 94 607-723 1-94 (178)
364 PF00656 Peptidase_C14: Caspas 96.8 0.00044 9.5E-09 78.0 1.2 153 142-301 20-201 (248)
365 KOG4224 Armadillo repeat prote 96.8 0.033 7.1E-07 63.6 15.4 245 460-730 207-457 (550)
366 PF08596 Lgl_C: Lethal giant l 96.8 0.25 5.4E-06 59.8 24.3 246 1082-1340 3-326 (395)
367 PF02897 Peptidase_S9_N: Proly 96.7 0.54 1.2E-05 57.5 27.6 248 1038-1308 126-411 (414)
368 PRK02888 nitrous-oxide reducta 96.7 0.094 2E-06 65.5 20.1 89 1250-1348 296-402 (635)
369 KOG3617 WD40 and TPR repeat-co 96.6 0.03 6.6E-07 69.4 14.6 245 1036-1292 60-376 (1416)
370 PF08553 VID27: VID27 cytoplas 96.6 0.12 2.6E-06 66.8 20.5 143 1054-1209 501-646 (794)
371 PF03178 CPSF_A: CPSF A subuni 96.5 0.12 2.6E-06 61.0 19.2 175 1157-1347 2-199 (321)
372 KOG3621 WD40 repeat-containing 96.5 0.0085 1.9E-07 73.6 9.0 115 1229-1346 36-150 (726)
373 KOG2171 Karyopherin (importin) 96.4 0.047 1E-06 71.1 15.3 159 544-727 349-510 (1075)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 3.6 7.9E-05 52.0 31.7 198 1047-1264 69-338 (527)
375 PF14583 Pectate_lyase22: Olig 96.3 2.8 6E-05 50.0 28.3 280 1042-1347 42-378 (386)
376 PF10508 Proteasom_PSMB: Prote 96.3 0.14 3.1E-06 64.2 18.9 210 441-665 20-231 (503)
377 PF13646 HEAT_2: HEAT repeats; 96.3 0.013 2.9E-07 54.7 7.4 86 546-661 2-88 (88)
378 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.11 2.4E-06 50.7 13.5 100 1141-1254 8-110 (111)
379 PF01602 Adaptin_N: Adaptin N 96.2 0.087 1.9E-06 66.5 16.7 138 501-663 42-179 (526)
380 PF06433 Me-amine-dh_H: Methyl 96.2 1.9 4.1E-05 50.5 25.5 210 1038-1269 97-330 (342)
381 PTZ00429 beta-adaptin; Provisi 96.0 0.062 1.3E-06 69.7 14.2 141 543-721 68-208 (746)
382 KOG2395 Protein involved in va 96.0 0.24 5.2E-06 59.5 17.6 148 1143-1299 341-498 (644)
383 PF12717 Cnd1: non-SMC mitotic 96.0 0.02 4.4E-07 61.5 8.4 92 559-666 2-93 (178)
384 PF00780 CNH: CNH domain; Int 96.0 4.1 8.8E-05 46.7 29.5 238 1045-1310 5-265 (275)
385 PF04841 Vps16_N: Vps16, N-ter 96.0 0.57 1.2E-05 57.3 21.6 175 1158-1347 62-243 (410)
386 COG5096 Vesicle coat complex, 95.9 0.07 1.5E-06 68.0 13.3 140 501-664 55-194 (757)
387 KOG1897 Damage-specific DNA bi 95.9 7.6 0.00016 50.6 30.3 279 1039-1347 310-610 (1096)
388 PF00780 CNH: CNH domain; Int 95.7 2.6 5.6E-05 48.3 24.6 217 1092-1348 5-253 (275)
389 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.017 3.6E-07 57.2 5.0 75 585-665 41-115 (119)
390 smart00320 WD40 WD40 repeats. 95.6 0.026 5.6E-07 41.7 5.2 38 1262-1299 3-40 (40)
391 PF14783 BBS2_Mid: Ciliary BBS 95.5 0.5 1.1E-05 46.3 14.6 102 1182-1297 2-110 (111)
392 TIGR03118 PEPCTERM_chp_1 conse 95.5 6.1 0.00013 45.4 25.1 235 1037-1281 24-307 (336)
393 PF01602 Adaptin_N: Adaptin N 95.5 0.3 6.5E-06 61.6 17.0 180 458-664 39-220 (526)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 7.8 0.00017 49.1 29.1 157 1047-1214 120-337 (527)
395 PF00930 DPPIV_N: Dipeptidyl p 95.4 5 0.00011 48.1 26.2 263 1044-1336 1-296 (353)
396 KOG4224 Armadillo repeat prote 95.4 0.69 1.5E-05 53.3 17.1 193 461-665 251-446 (550)
397 smart00320 WD40 WD40 repeats. 95.3 0.054 1.2E-06 39.9 6.0 28 1321-1348 13-40 (40)
398 KOG2079 Vacuolar assembly/sort 95.2 0.51 1.1E-05 61.1 17.3 79 1029-1111 124-202 (1206)
399 KOG4441 Proteins containing BT 95.2 0.79 1.7E-05 58.4 19.5 224 1046-1299 284-544 (571)
400 PF05694 SBP56: 56kDa selenium 95.2 5.9 0.00013 47.8 25.0 241 1093-1339 86-392 (461)
401 KOG4640 Anaphase-promoting com 95.1 0.075 1.6E-06 64.9 9.4 92 1227-1329 21-114 (665)
402 PHA02713 hypothetical protein; 95.1 1.2 2.7E-05 56.7 20.7 219 1058-1305 273-537 (557)
403 KOG2444 WD40 repeat protein [G 95.1 0.049 1.1E-06 59.2 6.8 142 1149-1301 32-177 (238)
404 KOG3630 Nuclear pore complex, 95.0 0.24 5.2E-06 64.2 13.5 191 1141-1338 47-261 (1405)
405 TIGR02270 conserved hypothetic 94.9 0.33 7.2E-06 59.0 14.2 118 545-719 88-205 (410)
406 KOG2444 WD40 repeat protein [G 94.8 0.039 8.4E-07 60.0 5.2 106 1147-1259 70-178 (238)
407 PF12348 CLASP_N: CLASP N term 94.8 0.28 6E-06 54.8 12.4 140 561-724 69-209 (228)
408 PF02985 HEAT: HEAT repeat; I 94.7 0.028 6E-07 42.0 2.7 25 640-664 4-28 (31)
409 KOG2395 Protein involved in va 94.7 0.37 8E-06 58.0 13.2 152 1045-1210 343-500 (644)
410 COG3204 Uncharacterized protei 94.7 5.1 0.00011 45.7 21.4 202 1127-1337 81-300 (316)
411 KOG4441 Proteins containing BT 94.7 1 2.2E-05 57.4 18.4 177 1146-1343 332-534 (571)
412 KOG1243 Protein kinase [Genera 94.7 0.13 2.7E-06 64.2 9.7 209 473-722 308-516 (690)
413 KOG0567 HEAT repeat-containing 94.6 0.12 2.7E-06 57.3 8.6 92 586-720 186-279 (289)
414 KOG1060 Vesicle coat complex A 94.5 0.37 7.9E-06 60.5 13.0 166 505-717 39-205 (968)
415 KOG4640 Anaphase-promoting com 94.4 0.14 3E-06 62.7 9.1 72 1036-1113 21-93 (665)
416 COG0823 TolB Periplasmic compo 94.4 4.9 0.00011 49.3 22.6 182 1082-1290 194-388 (425)
417 KOG1897 Damage-specific DNA bi 94.3 25 0.00054 46.2 29.3 292 1027-1339 481-794 (1096)
418 COG5167 VID27 Protein involved 94.3 2.1 4.5E-05 51.5 17.9 187 1102-1300 435-631 (776)
419 PF13513 HEAT_EZ: HEAT-like re 94.1 0.091 2E-06 44.7 5.0 55 559-621 1-55 (55)
420 KOG2025 Chromosome condensatio 93.9 0.75 1.6E-05 57.2 14.0 120 524-661 65-189 (892)
421 PHA02713 hypothetical protein; 93.9 1.2 2.6E-05 56.7 16.8 188 1046-1260 303-535 (557)
422 COG5096 Vesicle coat complex, 93.9 0.47 1E-05 60.8 12.7 162 516-722 35-196 (757)
423 PF05804 KAP: Kinesin-associat 93.9 4.6 0.0001 52.3 21.7 238 461-720 372-648 (708)
424 COG3391 Uncharacterized conser 93.9 7.8 0.00017 47.0 22.9 184 1037-1237 117-309 (381)
425 COG3391 Uncharacterized conser 93.8 20 0.00044 43.4 28.4 240 1037-1302 32-284 (381)
426 KOG2079 Vacuolar assembly/sort 93.8 0.24 5.2E-06 63.9 9.8 108 1227-1343 90-198 (1206)
427 KOG1060 Vesicle coat complex A 93.7 0.26 5.6E-06 61.8 9.7 166 466-664 40-208 (968)
428 COG3204 Uncharacterized protei 93.7 8.9 0.00019 43.8 20.8 169 1036-1212 86-265 (316)
429 PF02985 HEAT: HEAT repeat; I 93.7 0.092 2E-06 39.2 3.8 29 588-623 1-29 (31)
430 KOG0567 HEAT repeat-containing 93.7 0.62 1.3E-05 52.0 11.5 185 473-720 19-248 (289)
431 COG3386 Gluconolactonase [Carb 93.7 17 0.00037 42.6 24.3 216 1092-1339 34-274 (307)
432 PF12348 CLASP_N: CLASP N term 93.6 0.62 1.3E-05 52.0 12.1 93 559-664 108-205 (228)
433 PF11698 V-ATPase_H_C: V-ATPas 93.6 0.12 2.7E-06 51.1 5.5 71 546-624 46-116 (119)
434 KOG2171 Karyopherin (importin) 93.6 0.53 1.2E-05 61.7 12.5 155 502-667 349-506 (1075)
435 PF09759 Atx10homo_assoc: Spin 93.4 0.27 5.8E-06 47.6 7.3 66 561-631 2-67 (102)
436 TIGR02270 conserved hypothetic 93.4 0.37 8E-06 58.6 10.2 123 544-722 55-177 (410)
437 COG1413 FOG: HEAT repeat [Ener 93.1 1.3 2.9E-05 52.4 14.5 185 460-719 42-240 (335)
438 COG3386 Gluconolactonase [Carb 93.0 6.1 0.00013 46.4 19.3 192 1141-1348 30-241 (307)
439 cd00256 VATPase_H VATPase_H, r 92.8 1.3 2.9E-05 53.8 13.8 168 490-664 217-424 (429)
440 PF05536 Neurochondrin: Neuroc 92.4 1.5 3.2E-05 55.6 13.9 189 466-667 10-215 (543)
441 PF05804 KAP: Kinesin-associat 92.3 3.1 6.7E-05 53.8 16.8 180 470-664 259-440 (708)
442 PF04826 Arm_2: Armadillo-like 92.2 8.8 0.00019 43.8 18.7 233 460-712 11-253 (254)
443 TIGR03074 PQQ_membr_DH membran 92.2 28 0.0006 46.1 25.5 121 1047-1175 194-353 (764)
444 PRK10115 protease 2; Provision 92.0 52 0.0011 43.2 32.1 247 1037-1309 128-402 (686)
445 PF05694 SBP56: 56kDa selenium 91.9 19 0.00042 43.6 21.3 232 1046-1290 86-392 (461)
446 KOG2023 Nuclear transport rece 91.7 0.82 1.8E-05 56.5 10.0 163 534-722 32-245 (885)
447 PF02333 Phytase: Phytase; In 91.7 37 0.0008 40.9 24.4 212 1045-1268 66-300 (381)
448 PF12894 Apc4_WD40: Anaphase-p 91.6 0.47 1E-05 39.2 5.5 34 1035-1069 11-44 (47)
449 PF05096 Glu_cyclase_2: Glutam 91.5 30 0.00064 39.5 22.7 193 1030-1246 39-249 (264)
450 KOG1061 Vesicle coat complex A 91.5 2.2 4.7E-05 54.1 13.7 163 474-667 28-191 (734)
451 KOG0413 Uncharacterized conser 91.2 0.67 1.5E-05 59.1 8.8 142 559-734 945-1091(1529)
452 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 44 0.00095 40.9 30.0 81 1227-1310 308-408 (415)
453 PF12894 Apc4_WD40: Anaphase-p 91.1 0.54 1.2E-05 38.9 5.4 35 1271-1305 11-45 (47)
454 PHA03098 kelch-like protein; P 91.1 13 0.00028 47.2 20.8 188 1046-1260 294-513 (534)
455 COG0823 TolB Periplasmic compo 91.0 3.8 8.2E-05 50.3 15.0 123 1202-1340 218-345 (425)
456 TIGR03118 PEPCTERM_chp_1 conse 90.8 35 0.00076 39.5 21.0 200 1141-1348 28-277 (336)
457 COG3490 Uncharacterized protei 90.7 11 0.00025 42.7 16.7 160 1142-1307 120-317 (366)
458 PF14870 PSII_BNR: Photosynthe 90.7 40 0.00087 39.5 28.1 276 1034-1347 15-301 (302)
459 KOG1061 Vesicle coat complex A 90.5 1 2.2E-05 56.9 9.5 143 544-724 50-192 (734)
460 KOG4499 Ca2+-binding protein R 90.4 33 0.00071 38.1 20.3 96 1183-1281 161-263 (310)
461 COG1413 FOG: HEAT repeat [Ener 90.3 4.3 9.2E-05 48.1 14.6 153 461-664 74-241 (335)
462 KOG2280 Vacuolar assembly/sort 90.3 20 0.00043 45.8 20.0 244 1057-1339 64-314 (829)
463 COG5218 YCG1 Chromosome conden 90.1 1.8 3.9E-05 52.8 10.7 115 530-661 80-195 (885)
464 KOG2025 Chromosome condensatio 90.0 6.2 0.00014 49.6 15.3 174 476-664 59-258 (892)
465 smart00115 CASc Caspase, inter 89.6 2.1 4.6E-05 48.4 10.6 133 150-307 32-176 (241)
466 KOG1916 Nuclear protein, conta 89.6 0.16 3.4E-06 64.1 1.6 226 1056-1299 110-372 (1283)
467 PF12755 Vac14_Fab1_bd: Vacuol 89.0 1.7 3.6E-05 41.9 7.8 83 567-658 8-90 (97)
468 COG3490 Uncharacterized protei 88.9 13 0.00028 42.3 15.3 61 1042-1109 120-186 (366)
469 PRK13616 lipoprotein LpqB; Pro 88.8 31 0.00067 44.3 21.2 196 1036-1253 350-563 (591)
470 PF05096 Glu_cyclase_2: Glutam 88.8 49 0.0011 37.8 22.0 183 1141-1339 50-249 (264)
471 KOG1824 TATA-binding protein-i 88.4 36 0.00077 44.6 20.5 145 498-664 731-885 (1233)
472 PRK13616 lipoprotein LpqB; Pro 88.3 12 0.00026 48.0 17.1 147 1182-1347 352-522 (591)
473 KOG2759 Vacuolar H+-ATPase V1 88.3 0.46 1E-05 56.1 4.1 199 444-665 220-438 (442)
474 PF08728 CRT10: CRT10; InterP 88.3 16 0.00034 47.2 17.7 149 1192-1348 49-244 (717)
475 PHA03098 kelch-like protein; P 88.2 17 0.00038 46.0 18.7 149 1146-1309 342-519 (534)
476 KOG1824 TATA-binding protein-i 88.0 3.9 8.5E-05 52.7 12.0 92 560-667 947-1038(1233)
477 PHA02790 Kelch-like protein; P 87.9 16 0.00035 45.8 17.8 185 1046-1260 271-472 (480)
478 PF05918 API5: Apoptosis inhib 87.8 2.7 5.9E-05 52.5 10.5 100 548-664 25-124 (556)
479 PF02897 Peptidase_S9_N: Proly 87.7 76 0.0016 38.7 29.2 218 1090-1333 131-383 (414)
480 PF07995 GSDH: Glucose / Sorbo 87.7 68 0.0015 38.1 26.7 78 1263-1345 245-330 (331)
481 PF10647 Gmad1: Lipoprotein Lp 87.3 42 0.00092 38.2 19.3 148 1181-1340 25-185 (253)
482 KOG0414 Chromosome condensatio 87.2 0.79 1.7E-05 60.2 5.6 104 588-722 924-1028(1251)
483 TIGR02604 Piru_Ver_Nterm putat 87.0 78 0.0017 38.1 23.9 149 1081-1248 14-203 (367)
484 PF00514 Arm: Armadillo/beta-c 87.0 0.95 2.1E-05 36.0 4.0 39 626-664 2-40 (41)
485 PHA02790 Kelch-like protein; P 86.9 27 0.00059 43.7 19.0 139 1146-1302 318-471 (480)
486 cd00032 CASc Caspase, interleu 86.9 4 8.6E-05 46.3 10.5 87 150-248 34-131 (243)
487 KOG0211 Protein phosphatase 2A 86.7 9.5 0.00021 49.8 14.8 347 337-722 260-626 (759)
488 COG5218 YCG1 Chromosome conden 86.7 3.5 7.5E-05 50.6 10.0 119 569-716 75-194 (885)
489 KOG1916 Nuclear protein, conta 86.5 0.83 1.8E-05 58.0 5.1 113 1227-1348 181-321 (1283)
490 TIGR02604 Piru_Ver_Nterm putat 86.5 16 0.00036 43.9 16.2 146 1182-1340 16-203 (367)
491 TIGR03074 PQQ_membr_DH membran 86.2 1E+02 0.0022 41.0 24.0 119 1147-1268 194-353 (764)
492 PF10214 Rrn6: RNA polymerase 86.1 99 0.0021 41.3 24.4 179 1027-1212 71-278 (765)
493 PF14583 Pectate_lyase22: Olig 85.9 89 0.0019 37.7 27.0 236 1041-1299 86-379 (386)
494 COG5276 Uncharacterized conser 85.4 77 0.0017 36.5 27.1 199 1037-1260 88-287 (370)
495 PF04826 Arm_2: Armadillo-like 84.3 11 0.00024 42.9 12.5 153 540-720 9-162 (254)
496 PF14761 HPS3_N: Hermansky-Pud 84.1 36 0.00079 37.5 15.5 168 1048-1257 29-213 (215)
497 KOG1248 Uncharacterized conser 83.6 41 0.00089 45.2 18.3 112 605-730 796-907 (1176)
498 PRK13684 Ycf48-like protein; P 83.4 1.1E+02 0.0023 36.5 29.9 279 1035-1348 45-329 (334)
499 KOG1062 Vesicle coat complex A 83.1 52 0.0011 42.5 18.2 229 460-723 141-416 (866)
500 COG5116 RPN2 26S proteasome re 82.8 4.8 0.0001 49.1 8.9 135 547-726 520-655 (926)
No 1
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.3e-295 Score=2578.27 Aligned_cols=1311 Identities=57% Similarity=0.927 Sum_probs=1099.6
Q ss_pred cccchhhhcccccc--cccCcccC-CCCCCCCCCccCCCCcCCCCcCCCCccccccccccccccccccc--ccccccccc
Q 000697 3 LGDLMASRFSQSAV--VSNHLNDD-CGSAHGDVDLRRDSDTASSSYTNNASVTTITTTTTTSLAYLPQT--VVLCELRHE 77 (1348)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rh~ 77 (1348)
+||+|.|+.+++|+ |.||.+++ +.++|+|...+.+.... . ..++++...+...+++++.. +||+|+||.
T Consensus 1 ~~e~~~s~~~~~s~~~v~~~~~~~~~~~~~~d~~~~~~~~~~---~---~~~~~e~~~n~~~~~~l~~~~~ly~~d~Rh~ 74 (1387)
T KOG1517|consen 1 MGELSGSSPSSSSVQEVANHKVDNGADSSHDDTRSRLGDSIS---I---EQGFEEQYSNAQSLASLPQTFVLYLCDPRHD 74 (1387)
T ss_pred CCccccCCCCccchhhhccccccccccccccchhhhcccccc---c---ccchhhhhhhHHHHHhCcceEEEEecccccc
Confidence 58999999988877 89999854 44556665544332222 1 23467777888999999987 566999999
Q ss_pred cccCCCCCCCCCCCC--CCccccCCccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHH
Q 000697 78 AFEASTPSGPSDSGL--VSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155 (1348)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~ 155 (1348)
+ +| |++.+.+.. +++|||||||||++||||||||||||||||+|++||||+||||||+++++.||+|+||||||.
T Consensus 75 ~--~g-pi~~~~~~~~~~~~wR~keRmkT~svAlvlCLnigVDPPdvik~~pcaRle~WiDP~s~~~~KA~e~IG~nlq~ 151 (1387)
T KOG1517|consen 75 E--DG-PIETEDIVIEEIPDWRMKERMKTASVALVLCLNIGVDPPDVIKISPCARLECWIDPFSMGPPKALEAIGKNLQR 151 (1387)
T ss_pred c--cC-CCchhhcccccCCCchHHHHhhhhHhHHhhhhhcCcCCccccCCCcchhhhhccCccccCChHHHHHHHHHHHH
Confidence 9 66 676655544 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccCCCHHHHHHHHHHhhccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchHhhhhhcCC
Q 000697 156 QYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKT 235 (1348)
Q Consensus 156 qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~ 235 (1348)
|||+||+|+|||+++||++|||||+|+++||+||+||||||||||||||||+|||||||||+||||||+||+|||+|||+
T Consensus 152 qYE~wqprtRYK~~lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~a 231 (1387)
T KOG1517|consen 152 QYERWQPRTRYKVCLDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGA 231 (1387)
T ss_pred HHHhhChhhhhhhccCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCchhhHHHHH---HhhccC----------CCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhcccchH
Q 000697 236 PSIYVFDCSAAGMIVNAF---IELHDW----------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1348)
Q Consensus 236 p~~~v~dc~~ag~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftscl~tP~ 302 (1348)
|+||||||++||+||.+| .|.+|+ +.++..+.|+|||++|||+++|+|||+|+||||+|||||||||
T Consensus 232 P~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTsCLTTPI 311 (1387)
T KOG1517|consen 232 PTIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTSCLTTPI 311 (1387)
T ss_pred CeEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhhhhcCch
Confidence 999999999999887776 555542 2355678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhccCCCCcCcccCchhhHHHHHHHHHHHHhhccCCHHHHHHhhhhhhHHHHHHHHHHHH
Q 000697 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLA 382 (1348)
Q Consensus 303 ~~al~~~~~~~~~~~~~~~~~~~~ipg~~~~~~~~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d~~va~lfrnflla 382 (1348)
+|||+||++|++++..++.++|++|||+++|||||||||||||||||||||||+|||++||||||||||||+||||||||
T Consensus 312 ~isl~w~~~~s~l~~~i~~~lidkIPGrlnDRRT~LGELNWIFTAITDTIAWn~lPR~LFQrLFRQDLLvAsLFRNFLLA 391 (1387)
T KOG1517|consen 312 EISLKWFLMQSPLKDFIDESLIDKIPGRLNDRRTPLGELNWIFTAITDTIAWNSLPRELFQRLFRQDLLVASLFRNFLLA 391 (1387)
T ss_pred hHHHHHHHhhchhhhhhhhHHHhhCCccccccccccchhceeeeeeeceehhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCC-CCCcCC-CcchHHhHhhhHHHhcCCCCCCCCC
Q 000697 383 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADP-NAEYQP-SPFFSEQLTAFEVWLDHGSEHKKPP 460 (1348)
Q Consensus 383 ~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~-~~~~~~-~~ff~~~Ltafe~~L~~g~~~~~~p 460 (1348)
||||++|||||||.|+||+|++||||++||+|+|+||+|||.++.++ +++|++ ++||+|||||||+||++|++.++||
T Consensus 392 eRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PP 471 (1387)
T KOG1517|consen 392 ERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPP 471 (1387)
T ss_pred HHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCCh
Confidence 99999999999999999999999999999999999999999777776 699999 6999999999999999999999999
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~ 540 (1348)
|||||||||||||+||+|||+||+||||+|||||+|||++||||||||||||++.|||++||||||||||+||+||.||+
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhhhhhhccC-CCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 541 KDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 541 k~~~~~yf~~~L~~-~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
|++||+||+++|++ ...++|||+|+|||||.|+++|+.||..|++.+++.+|+++|++ ++.|++|||+|||||
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd------~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND------DPEPLLRQWLCICLG 625 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC------CccHHHHHHHHHHHH
Confidence 99999999999998 55557999999999999999999999999999999999999993 368999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCC-CCCCc-hHHHHHHHHHHH---
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEG-DEECD-DDEKIRAEISII--- 694 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~e~~~~--- 694 (1348)
+||+||++|+|+|++.++|++|+.+|.|++||||||+|||||+|++...+.|...... .+..+ ++++..+|..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999998765544321111 11111 234566787777
Q ss_pred HHHhhhccCCChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccccccCCcCcccccccCCCCcc--cccccCCccccc
Q 000697 695 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSI--VSSQIGPLTRVG 772 (1348)
Q Consensus 695 ~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 772 (1348)
+.++..++|+||+||+|++++|++++..|.++|..+|+++++++.+..-...... +..+..++ ..+.+...|..+
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE~~~~~~---~~s~~~~~~~~~si~~~~~~s~ 782 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLEKSLPNK---AQSSHKFSDSGSSIVATTWMSL 782 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhhccCCcc---ccccccccccccceeeeechhh
Confidence 5888899999999999999999999999999999999999988654222111100 01111111 111122122211
Q ss_pred c-----cc----ccccCccccC-CCccccCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCCCCCCCchHHHHHHHHH
Q 000697 773 N-----EA----VVRDGRVSTS-SPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMC 842 (1348)
Q Consensus 773 ~-----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 842 (1348)
+ .. ...++..+.+ ..++..+.+.+.++..++......+.......+|... .++...++.|++..+..+
T Consensus 783 L~rs~d~s~~~a~aa~~~i~~~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~--~~~~~~~at~s~~v~~~~ 860 (1387)
T KOG1517|consen 783 LIRSLDPSLENAEAAEGIISYSLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVH--QPRSLDNATYSQSVKSML 860 (1387)
T ss_pred eeeccCcccchhHhhcCeeeccccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccC--CCccccchHHHHHHHHhH
Confidence 1 00 1122222222 2222334444556665555555544444433333221 233456789999999999
Q ss_pred hhcCCCChhhhhhcchhhcchhchhhcccCcccCCCCCCCCCCCCCCCCCCCCCccccCccccCCC----------CCCC
Q 000697 843 TLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNG----------GHLP 912 (1348)
Q Consensus 843 ~L~~Dp~p~v~~~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rs~s~~~~~~----------~~~~ 912 (1348)
.+++||+|+|+.+++++.+.+..|+.+..+++.........+ ..++...++.++.++.++.. .+.+
T Consensus 861 ~~~k~P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~g~~~~----~~~~~~~gL~~s~S~~d~~a~s~~~s~~~~~~~s 936 (1387)
T KOG1517|consen 861 RLAKDPNPRVSSLGRRVLSLIGKEQRVADPSKVSGPVGEAAS----SASTPLQGLALSSSGSDMHASSKDDSSLTDENKS 936 (1387)
T ss_pred hhhcCCCccccchhhhhhhhhchhccccCcccccCCCCcccc----cccchhhhcccccCCCCCCcCCcccccccccccC
Confidence 999999999999999999999888776655443322110111 11122334445555444421 2333
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC-CCcchhccccccCCccCCCC
Q 000697 913 LKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLP-PSTIYNWSCGHFSKPLLTAA 991 (1348)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP-~S~f~ews~~yf~~P~m~~~ 991 (1348)
...++++..|+...++.|.++.+...+.|+....|..+.+.+.....+ .++..+| ...||+||++||++|+|+..
T Consensus 937 ~n~et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~~~~~l~~p~~~a~~----~e~S~l~~~~~f~~Ws~~yF~eP~m~~~ 1012 (1387)
T KOG1517|consen 937 LNDETPPSGPPGTNGLAGARRVCPLAFRPRLEKHPDRGLADPLDGASG----SERSLLPTVTIFYDWSRKYFTEPQLKGA 1012 (1387)
T ss_pred cccCCCCCCCCCccccccCCcCCChhcCchhccCCCccccCccccccc----cccccccceeeechhhHhhhcccccCCc
Confidence 445566777788788888888888888888766665444444332222 2356777 45599999999999999999
Q ss_pred CCchHHHHHHHHH--HHHHHHHHHhhccc-cccccC-CcccccccCCCCC----eEEEEEcCCCCEEEEEECCCcEEEEE
Q 000697 992 DDTEEILARREER--EKFALEHIAKCQRS-SVSKLN-NPIACWDTRFEKG----TKTALLQPFSPIVVAADENERIKIWN 1063 (1348)
Q Consensus 992 e~de~~~~~r~~r--~~~~~e~i~~~q~~-~~~kl~-~~i~~Wd~~~~~~----I~sl~fspdg~~Latgs~dg~I~VWd 1063 (1348)
+++|+++.++++| ++.+.+.+.+.+.+ +..++. ..+..|+.+...+ ...+.|+|..+.++++++...|+|||
T Consensus 1013 e~dE~~s~~~~~r~wrr~R~e~i~kr~~~~~~~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd 1092 (1387)
T KOG1517|consen 1013 EADEEGSEEREERLWRRNRNEKIIKRQASQEIQKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWD 1092 (1387)
T ss_pred cccchhhhHHHHHHHHHhhHHHHHHhhcccceeeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEe
Confidence 9999998875544 55555655444333 233443 3478999887544 89999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcccccceEEE
Q 000697 1064 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVD 1142 (1348)
Q Consensus 1064 ~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ 1142 (1348)
++.++.+..|.++.++...|+.++++|..|..++++|+.||.||||+.+... ++.+++++|..+.++.......+++++
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence 9999999999999999999999999999999999999999999999998765 889999999999999988888888999
Q ss_pred EecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe--eeEeec
Q 000697 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTR 1220 (1348)
Q Consensus 1143 ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~--~v~~~~ 1220 (1348)
|.+..++|+++|+...|+|||+.++. ++..++...+..|++++.....|+++++|+.||+|++||.|.... .+..++
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 99999999999999999999999999 999999999999999988888899999999999999999997653 555554
Q ss_pred CCCCCCCC--eEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecCC--C-CeEEEEEeCCCCEEEEEeCCCc
Q 000697 1221 PHTQQVER--VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHR--G-SLSALAVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1221 ~~~~h~~~--I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h~--~-~VtsLa~spdg~~LasgS~Dg~ 1294 (1348)
.|... |..+.+++. +-..|++|+.||.|++||+|.. .+...++..|. + .++++.+|++.+++|+|+. +.
T Consensus 1252 ---~h~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1252 ---EHNDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred ---ccCCcccceeEEeecC-CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 44455 999999997 3457999999999999999983 33344444443 4 5999999999999999998 99
Q ss_pred EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+||++.|+.+..+++ +.+|+++..+.++|++|||+..+||+|+.|.+|.||.
T Consensus 1327 ikIy~~~G~~l~~~k~-n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1327 IKIYSLSGEQLNIIKY-NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred EEEEecChhhhccccc-CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 9999999999999999 9999999999999999999999999999999999984
No 2
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=100.00 E-value=1.9e-62 Score=501.70 Aligned_cols=153 Identities=75% Similarity=1.325 Sum_probs=152.1
Q ss_pred ccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCHHHHHHH
Q 000697 101 RMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKL 180 (1348)
Q Consensus 101 ~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~ 180 (1348)
||||+++|||||||||+||||++|++||||+|||+||+.++++|++++||++||+|||+|++|+|||+++||++||+|++
T Consensus 1 ~~kt~~~~l~lcln~g~dppd~~~~~~~ar~~cW~dp~~~~~~~~~~~I~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~ 80 (154)
T PF14538_consen 1 RMKTVSVALVLCLNIGVDPPDVVKTSPCARLECWIDPSNMPPSKASEEIGKNLQSQYESWQPRARYKQSLDPTVEDLKRL 80 (154)
T ss_pred CceeeEEEEEEeecCCCCCCCccccCCCceEEEecCCcccCchhHHHHHHHHHHHHHHHhCccCcEEEecCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchHhhhhhcCCCeEEEEeCCchhhHHHHH
Q 000697 181 CNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAF 253 (1348)
Q Consensus 181 ~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~p~~~v~dc~~ag~~~~~~ 253 (1348)
|.++||+|++|||||||||||||+||++|||||||++||||||+||+||++|+|+|+||||||+|||.||++|
T Consensus 81 ~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~AG~il~~f 153 (154)
T PF14538_consen 81 CQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSNAGSILNAF 153 (154)
T ss_pred HHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCcHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.2e-56 Score=529.03 Aligned_cols=794 Identities=18% Similarity=0.196 Sum_probs=445.6
Q ss_pred HHHHHHHHHHHhhhcCCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCCCCCcCCCcchHHhHhhhHHHhcCC
Q 000697 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHG 453 (1348)
Q Consensus 374 ~lfrnflla~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Ltafe~~L~~g 453 (1348)
..|..=|=|=-+-=.||..-=.=| ++.-++|+..|+|.+++ ++|..+.+|||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PP-----------eQLPiVLQVLLSQvHRl---------------RAL~LL~RFLDlG 501 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPP-----------EQLPIVLQVLLSQVHRL---------------RALVLLARFLDLG 501 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCCh-----------HhcchHHHHHHHHHHHH---------------HHHHHHHHHhccc
Confidence 445555555555445554321111 56778999999999999 9999999999999
Q ss_pred CCCCCC---CCchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHH---------hcCchhhhHHhccC-C--chhhh
Q 000697 454 SEHKKP---PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLAL---------SVGIFPYVLKLLQT-T--TPELR 518 (1348)
Q Consensus 454 ~~~~~~---p~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal---------~~gifpyvlklL~s-~--a~elr 518 (1348)
+|+... .||||||||+|||.+.+||++++ || ||+|||| +.+++-||++.|+. + .+|+|
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLV---FI----WAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqr 574 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILV---FI----WAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQR 574 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHH---HH----HHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHH
Confidence 999654 49999999999999999999999 99 9999996 67889999999987 3 46999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000697 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1348)
Q Consensus 519 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 598 (1348)
+|++||+|.|+..++-||.+|+..+++..|+.+|++.. .|++|||+|+||++||.||..+||.|.++++|++++.+|.
T Consensus 575 tmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls- 652 (1387)
T KOG1517|consen 575 TMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS- 652 (1387)
T ss_pred HHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc-
Confidence 99999999999999999999999999999999999864 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcc----chHHHHhh------------hccCch---hhhhhhccCCCHHHHHHHHHH
Q 000697 599 SMPNDAQTEPLFLQWLCLCLGKLWED----FTEAQTIG------------RRADAP---AIYVPLLSEPQPEVRASAVFS 659 (1348)
Q Consensus 599 ~~~~~~d~~p~~R~w~~l~Lg~l~~~----~~~~~~~~------------~~~~~~---~~l~~ll~D~sP~VRaa~v~a 659 (1348)
|++||||++++++||+|+++ +++..... ++..+. ..++.+++|++|+||+|++++
T Consensus 653 ------D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 653 ------DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred ------CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999987 56554433 444444 378889999999999999999
Q ss_pred HHhhcccCcCCCCCCCCCCCCCchHHHHHHH---------------------HHHHHHHhhhccCCChhhHHHHHHHHHH
Q 000697 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAE---------------------ISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1348)
Q Consensus 660 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e---------------------~~~~~~ll~~~~D~sp~VR~e~~~~ls~ 718 (1348)
|++|+-.+..++... +.++...+....| ..+++.+|....|+|-.+..++--.+++
T Consensus 727 ls~~~~g~~~~~~~v---a~n~~~~~~~~lE~~~~~~~~s~~~~~~~~~si~~~~~~s~L~rs~d~s~~~a~aa~~~i~~ 803 (1387)
T KOG1517|consen 727 LSHFVVGYVSHLKVV---AGNYLLPESSSLEKSLPNKAQSSHKFSDSGSSIVATTWMSLLIRSLDPSLENAEAAEGIISY 803 (1387)
T ss_pred HHHHHHhhHHHhHHH---hhhhcccchhhhhccCCccccccccccccccceeeeechhheeeccCcccchhHhhcCeeec
Confidence 999996665443321 1111111110111 1124556666778777653333322222
Q ss_pred HHHhc------chh------HHHHHHhhccccccc-ccCCcCcccccccCCCCcccccccCCccccccccccccCccc-c
Q 000697 719 FAFGH------KQH------LKSIAAAYSKPQSNS-LLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEAVVRDGRVS-T 784 (1348)
Q Consensus 719 ~~~~~------~~~------f~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 784 (1348)
..... ... +...+...+.+.... .......+. +..+ .. .+.+..+.. +
T Consensus 804 ~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~~~~~~~-----------~at~---s~----~v~~~~~~~k~ 865 (1387)
T KOG1517|consen 804 SLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVHQPRSLD-----------NATY---SQ----SVKSMLRLAKD 865 (1387)
T ss_pred cccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccCCCcccc-----------chHH---HH----HHHHhHhhhcC
Confidence 11110 000 111111100000000 000000000 0000 00 000000000 1
Q ss_pred CCCccccCCC-----CCCCCC-CCC-CCCCCCCcccCCCCCCcccccCCCCCCCchHHHHHHHHHhhc---CCCChhhhh
Q 000697 785 SSPLANAGLM-----HGSPLS-DDS-SQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLA---KDPSPRIAT 854 (1348)
Q Consensus 785 ~~~~~~~~~~-----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~Dp~p~v~~ 854 (1348)
+.+..++..+ .+.+.. .+. -.....|.. .+...+-.+. +.++ .|++-.-
T Consensus 866 P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~g~~------------------~~~~~~~~~g-L~~s~S~~d~~a~s-- 924 (1387)
T KOG1517|consen 866 PNPRVSSLGRRVLSLIGKEQRVADPSKVSGPVGEA------------------ASSASTPLQG-LALSSSGSDMHASS-- 924 (1387)
T ss_pred CCccccchhhhhhhhhchhccccCcccccCCCCcc------------------cccccchhhh-cccccCCCCCCcCC--
Confidence 1111110000 000000 000 000000000 0000000000 0000 0000000
Q ss_pred hcchhhcchhchhhcccCcccCCCCCCCCCCCCCCCCC-CCCCccccCccccCCCCCCCCCCCCCC--CCCCCCCCCc--
Q 000697 855 LGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTP-SLAGLVRSSSWFDMNGGHLPLKFRTPP--VSPPRQSFLP-- 929 (1348)
Q Consensus 855 ~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~rs~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 929 (1348)
-. + + .......+. ....+.+.++.+ ...+..|..+.... +.....+. ...|...+..
T Consensus 925 -~~---~-s----~~~~~~~s~----n~et~~~~p~~~~~l~Ga~~~~~~~~~-----p~~~~~~~~~l~~p~~~a~~~e 986 (1387)
T KOG1517|consen 925 -KD---D-S----SLTDENKSL----NDETPPSGPPGTNGLAGARRVCPLAFR-----PRLEKHPDRGLADPLDGASGSE 986 (1387)
T ss_pred -cc---c-c----cccccccCc----ccCCCCCCCCCccccccCCcCCChhcC-----chhccCCCccccCccccccccc
Confidence 00 0 0 000000000 000000000000 00001111100000 00000000 0000000000
Q ss_pred --ccccc-cccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCcchhccccccCCccCCCCCCchHHH-----HHH
Q 000697 930 --GMRRV-CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL-----ARR 1001 (1348)
Q Consensus 930 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~S~f~ews~~yf~~P~m~~~e~de~~~-----~~r 1001 (1348)
.++.+ .++.|..+++.+|. +...+..++++. +|--+.+++-..+.....+.++ ...
T Consensus 987 ~S~l~~~~~f~~Ws~~yF~eP~--m~~~e~dE~~s~--------------~~~~r~wrr~R~e~i~kr~~~~~~~~lst~ 1050 (1387)
T KOG1517|consen 987 RSLLPTVTIFYDWSRKYFTEPQ--LKGAEADEEGSE--------------EREERLWRRNRNEKIIKRQASQEIQKLSTN 1050 (1387)
T ss_pred cccccceeeechhhHhhhcccc--cCCccccchhhh--------------HHHHHHHHHhhHHHHHHhhcccceeeeccc
Confidence 01011 13567788888885 444444444331 1111111111111110000000 000
Q ss_pred --HHHHHHHHHHHHhhcccc-----------ccccCCcccccccCCC-------------CCeEEEEEcCC--CCEEEEE
Q 000697 1002 --EEREKFALEHIAKCQRSS-----------VSKLNNPIACWDTRFE-------------KGTKTALLQPF--SPIVVAA 1053 (1348)
Q Consensus 1002 --~~r~~~~~e~i~~~q~~~-----------~~kl~~~i~~Wd~~~~-------------~~I~sl~fspd--g~~Latg 1053 (1348)
..|+.+...... .++.. ....+..+.+|+.+.+ ..|+.+.+-.+ ..+|++|
T Consensus 1051 ~i~~W~~~~~~~n~-~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNN-QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred cccchHHHHHhcCC-CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee
Confidence 122222211100 01111 1122456777887753 67999998654 3489999
Q ss_pred ECCCcEEEEE-CCC----CcEEEEeeCCCC--CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1054 DENERIKIWN-YEE----DTLLNSFDNHDF--PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1054 s~dg~I~VWd-~~t----~~~l~~~~~h~~--~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+.||.|+||+ +.+ .+.+..+.+-.. ++..=+.+.+.|.+..++|+++|+-..|+|||... ...+ ..
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~----E~~~---~d 1202 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK----EQVV---AD 1202 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc----ceeE---ee
Confidence 9999999994 433 245554433210 11111223444477777888888899999999965 1222 11
Q ss_pred cc-CCCCcccccceEEEEe-cCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCC-CeEEEEEecCCC-CEEEEEeC
Q 000697 1127 IQ-GHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC-SISALTASQVHG-GQLAAGFV 1200 (1348)
Q Consensus 1127 l~-~h~~~V~si~~~v~ws-~~~~~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~~~~~-~VtsL~~~s~dg-~~LvsGs~ 1200 (1348)
+. +....+++ +.-+ ..++.+++|..||.|++||.+.... .+...+.|... +|..+ ..++.| ..+++|+.
T Consensus 1203 iP~~s~t~vTa----LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~-slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTA----LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL-SLQRQGLGELVSGSQ 1277 (1387)
T ss_pred cccCCCcccee----ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE-EeecCCCcceeeecc
Confidence 21 22222333 3332 3357777788999999999886431 46666666543 37888 445544 46999999
Q ss_pred CCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-------CC
Q 000697 1201 DGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-------RG 1272 (1348)
Q Consensus 1201 DG~VrvwDlr~~~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-------~~ 1272 (1348)
||.|++||+|... ........+.+..+.++++.++++ ...+++|+. +.|+||++.. +.+..++.+ .+
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h--apiiAsGs~-q~ikIy~~~G--~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH--APIIASGSA-QLIKIYSLSG--EQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccC--CCeeeecCc-ceEEEEecCh--hhhcccccCcccccCcCC
Confidence 9999999999842 111122122222346999999999 999999998 9999999984 345555433 35
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
.++|++|||+..++|+|+.|.+|.||..+.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCC
Confidence 789999999999999999999999998543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=330.72 Aligned_cols=286 Identities=17% Similarity=0.297 Sum_probs=255.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|++.|.|+.|+|+|..|++|+.|.++|+||..+...+.+.++|. ..|.|++| +|||+.|++|+.||.|++||.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~---~WVlcvaw--sPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK---NWVLCVAW--SPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc---cEEEEEEE--CCCcchhhccccCCeEEEecC
Confidence 4578999999999999999999999999999999999999999999 99999999 899999999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEec-----CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-----QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-----~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.+ +++. . +.+.+|...|.+ ++|.| ....+++++.||.|+|||+..+. ++..+.+|... |+|+.
T Consensus 187 kt--g~~~-g---~~l~gH~K~It~----Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~-VTCvr 254 (480)
T KOG0271|consen 187 KT--GQQI-G---RALRGHKKWITA----LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTAS-VTCVR 254 (480)
T ss_pred CC--CCcc-c---ccccCcccceeE----EeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccc-eEEEE
Confidence 66 3322 2 578999999998 89975 46688888999999999999999 99999999887 99995
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-----------------------------
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG----------------------------- 1237 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~----------------------------- 1237 (1348)
| ....++++|+.|++|++|+...+. +.+ .+++|..+|+.++.+-+
T Consensus 255 w--GG~gliySgS~DrtIkvw~a~dG~-~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 255 W--GGEGLIYSGSQDRTIKVWRALDGK-LCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred E--cCCceEEecCCCceEEEEEccchh-HHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 4 245799999999999999998876 444 45688899999998722
Q ss_pred -----CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc
Q 000697 1238 -----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1311 (1348)
Q Consensus 1238 -----~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~ 1311 (1348)
..+..+++|+.|+++.+|+.....+++..+.+|..-|+.+.|+||++++|++|.|+.|++|+ .+|+.+.++++
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG- 407 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG- 407 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-
Confidence 12345999999999999999877689999999999999999999999999999999999999 78999999998
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|- +.|..++|+.|.++|++|+.|.++++|+
T Consensus 408 Hv-------~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 408 HV-------AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred cc-------ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 54 8999999999999999999999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=334.13 Aligned_cols=282 Identities=20% Similarity=0.301 Sum_probs=256.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+|..+.|+.|++.|+||+.+|.++||+..+...+.+|.+|. ..|.++.|.|-.++..++||+.||++++|++...
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3689999999999999999999999999999999999999999 9999999954224779999999999999999651
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
. ....+.+|...|.. ++|+|+|.+|.+++.|.+-++||++++. .+....+|..+ |.++ .++++|.+
T Consensus 252 ----~---~l~~l~gH~~RVs~----VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~-v~~i-af~~DGSL 317 (459)
T KOG0272|consen 252 ----T---PLQDLEGHLARVSR----VAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKG-VFSI-AFQPDGSL 317 (459)
T ss_pred ----c---chhhhhcchhhhee----eeecCCCceeeecccccchhhcccccch-hhHhhcccccc-ccee-EecCCCce
Confidence 2 22678999998888 9999999999999999999999999998 67777777776 9999 78899999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
+++|+.|..-+|||+|++.+ +.. +.+|...|.+|.|+|+ |..|+||+.|++++|||++.. ..+.++.+|.+-|
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~-im~---L~gH~k~I~~V~fsPN--Gy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRC-IMF---LAGHIKEILSVAFSPN--GYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLV 390 (459)
T ss_pred eeccCccchhheeecccCcE-EEE---ecccccceeeEeECCC--ceEEeecCCCCcEEEeeeccc-ccceecccccchh
Confidence 99999999999999999994 333 3478899999999999 999999999999999999987 7899999999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~sp-dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+.|+| .|.+|+|+|.|++++||. .+..+++++.+ |+ +.|.+++.++++.+++|++.|.++++|.
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He-------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HE-------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Cc-------cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999998 788999999999999999 66788899998 76 8999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=299.11 Aligned_cols=288 Identities=16% Similarity=0.267 Sum_probs=257.4
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
--..|.+.|.++.|++|.++|++++.||.+.|||.-+..+++.+.... ..|...+| +|.|+++++|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~--sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAY--SPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEE--CCCCCeEEecCcCceeEEE
Confidence 345577899999999999999999999999999999999999888777 89999999 8999999999999999999
Q ss_pred eccCC--CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1110 KDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1110 dl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
++... ++..... +.+.+|.+.+.+ +.|- ++++|++++.|.+..+||+++++ .+..+.+|.+. |.++ .
T Consensus 125 ~ls~~d~~g~~~v~---r~l~gHtgylSc----C~f~-dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD-V~sl-s 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVS---RELAGHTGYLSC----CRFL-DDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD-VMSL-S 193 (343)
T ss_pred ecccccccccceee---eeecCccceeEE----EEEc-CCCceEecCCCceEEEEEcccce-EEEEecCCccc-EEEE-e
Confidence 99753 3333333 678999999888 6665 48899999999999999999999 99999999887 9999 5
Q ss_pred ecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1188 SQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1188 ~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+| +++.|++|+-|+..++||+|.+. .++.+ .+|.+.|++|+|.|+ |.-|++|+.|++.++||+|.. ..+..
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF---~ghesDINsv~ffP~--G~afatGSDD~tcRlyDlRaD-~~~a~ 266 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTF---EGHESDINSVRFFPS--GDAFATGSDDATCRLYDLRAD-QELAV 266 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcc-eeEee---cccccccceEEEccC--CCeeeecCCCceeEEEeecCC-cEEee
Confidence 566 99999999999999999999997 56544 577899999999999 999999999999999999987 56666
Q ss_pred Eec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1267 IDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1267 ~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+.. -..+|++++|+..|++|.+|..|..+.||| +.++.+..+.+ |+ ..|+|+..+|||..++||+.|.+
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-He-------NRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HE-------NRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cC-------CeeEEEEECCCCcEEEecchhHh
Confidence 663 245899999999999999999999999999 89999999998 76 89999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
++||+
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=316.24 Aligned_cols=284 Identities=19% Similarity=0.331 Sum_probs=245.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIW 1109 (1348)
|...|.|++|+|||+.||+|+.||+|++||.++|+.+ ..+.+|. ..|++++|.+ .+...+|++++.||.|+||
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc---cceeEEeecccccCCCccceecccCCCCEEEE
Confidence 4467999999999999999999999999999988655 5689999 9999999943 2466799999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe-
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS- 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~- 1188 (1348)
|+.. +... ..+.+|+.+|+| +.|- ..++|++|+.|++|++|+...+. +.+.+++|... |+.++..
T Consensus 233 d~~~--~~~~-----~~lsgHT~~VTC----vrwG-G~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahw-vN~lalsT 298 (480)
T KOG0271|consen 233 DTKL--GTCV-----RTLSGHTASVTC----VRWG-GEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHW-VNHLALST 298 (480)
T ss_pred EccC--ceEE-----EEeccCccceEE----EEEc-CCceEEecCCCceEEEEEccchh-HHHhhcccchh-eeeeeccc
Confidence 9854 3333 458999999998 8996 35799999999999999999999 99999998776 8888332
Q ss_pred ---------cCCC-------------------------CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1189 ---------QVHG-------------------------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1189 ---------s~dg-------------------------~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.+.+ ..+++|+.|+++.+|+-...++.+.. ..+|..-|+.+.|
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r---mtgHq~lVn~V~f 375 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR---MTGHQALVNHVSF 375 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh---hhchhhheeeEEE
Confidence 1222 35999999999999998866645443 3477899999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE-EEeccCC
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG-TIRYHHP 1313 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~-~i~~~h~ 1313 (1348)
+|+ +++++++|.|..|++||.+++ +.+.+|++|-+.|..++|+.|.++|++||.|.+++||++..+.+. .+.+ |.
T Consensus 376 SPd--~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~ 451 (480)
T KOG0271|consen 376 SPD--GRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HA 451 (480)
T ss_pred CCC--ccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CC
Confidence 999 999999999999999999998 899999999999999999999999999999999999997665544 4555 44
Q ss_pred cccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1314 ~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|.++.|+|||..+++|+.|..+++|.
T Consensus 452 -------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 -------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999999999999999994
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=296.49 Aligned_cols=281 Identities=18% Similarity=0.333 Sum_probs=241.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+|..+.|.|+|+.|++|+..|.+.+|+..+-......+.|+ ..|+++.| +.++.++++|+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD---s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD---SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc---ccceeEEE--ccCCCEEEEcCCCceEEecccch
Confidence 34689999999999999999999999999975433333457888 89999999 78999999999999999999854
Q ss_pred CCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
... +.+..|. ..|++ ++|+|++..++++++||+|+|||....+ ....+.+|.- .|.++ .+.|..
T Consensus 170 --nnV------k~~~ahh~eaIRd----lafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksv-dWHP~k 234 (464)
T KOG0284|consen 170 --NNV------KIIQAHHAEAIRD----LAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSV-DWHPTK 234 (464)
T ss_pred --hhh------HHhhHhhhhhhhe----eccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-Cccee-ccCCcc
Confidence 222 2344444 88888 9999999999999999999999999887 6777777655 49999 567788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++|+.|..|++||.|++.+ +. +..+|+..|..+.|+++ +++|+++|.|..++++|+|+. +.+.++++|+.
T Consensus 235 gLiasgskDnlVKlWDprSg~c-l~---tlh~HKntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkk 307 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSC-LA---TLHGHKNTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKK 307 (464)
T ss_pred ceeEEccCCceeEeecCCCcch-hh---hhhhccceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHhhcchh
Confidence 8999999999999999999984 44 33477899999999999 899999999999999999977 78899999999
Q ss_pred CeEEEEEeCC-CCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRH-APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.|+++.|||- ..+|.+|+.||.|..|.+. .+++..+... |.+.|++++|||-|.+|++|+.|.++++|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-------Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-------HDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccCCCcc-------cccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999995 4589999999999999976 4555555543 448999999999999999999999999994
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=7.3e-30 Score=267.46 Aligned_cols=269 Identities=17% Similarity=0.294 Sum_probs=231.0
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecc
Q 000697 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1127 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l 1127 (1348)
-+|++++.|.+||+|...+|.+..+++..+ +.|..+.. .+++..|++|+.- .||+||+...+.. .+ .++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLei--Tpdk~~LAaa~~q-hvRlyD~~S~np~--Pv---~t~ 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEI--TPDKKDLAAAGNQ-HVRLYDLNSNNPN--PV---ATF 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEE--cCCcchhhhccCC-eeEEEEccCCCCC--ce---eEE
Confidence 389999999999999999999999999877 89999999 7899999988765 7999999883333 23 458
Q ss_pred cCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEE
Q 000697 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207 (1348)
Q Consensus 1128 ~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrvw 1207 (1348)
.+|...|.. +.|+.+|..+++||+||+++|||++... +.+.+.. .++|+++ ...|+...|++|..+|.|++|
T Consensus 80 e~h~kNVta----VgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~~--~spVn~v-vlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 80 EGHTKNVTA----VGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQH--NSPVNTV-VLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred eccCCceEE----EEEeecCeEEEecCCCceEEEEeccCcc-cchhccC--CCCcceE-EecCCcceEEeecCCCcEEEE
Confidence 899998888 8999999999999999999999999977 6666554 3569999 778888999999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-----cceEEEecCCCCeEEEEEeCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-----DAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-----~~v~t~~~h~~~VtsLa~spd 1282 (1348)
|++........+ . +....|.++++.|+ |.+++.+...|...+|++-... +++..++.|.+.+..+.+||+
T Consensus 152 Dl~~~~c~~~li-P--e~~~~i~sl~v~~d--gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 152 DLGENSCTHELI-P--EDDTSIQSLTVMPD--GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EccCCccccccC-C--CCCcceeeEEEcCC--CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 999876333322 2 23478999999999 9999999999999999986532 677889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCc--eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1283 APIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1283 g~~LasgS~Dg~I~Vwd~~g~--~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++||++|.|++++||+.++- .-..+++ |. ..++..+||.+|.||+||+.|+.+++|+
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~-------rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQ-------RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeec-CC-------ceEEeeeeccCccEEEecCCCCceeecc
Confidence 999999999999999998765 2234555 43 7899999999999999999999999996
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=291.18 Aligned_cols=241 Identities=20% Similarity=0.342 Sum_probs=221.5
Q ss_pred CCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspd--g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
|...+.++.|+|. +..||+|+.||++++|++++...+..+.+|. .+|..++| +|+|.+|+|++.|.+=++||+
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~---~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL---ARVSRVAF--HPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch---hhheeeee--cCCCceeeecccccchhhccc
Confidence 4578999999997 5599999999999999999889999999999 89999999 899999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+ +..-+ ...||..+|.+ ++|+++|..+++||.|..-+|||++++. ++..+.+|.+. |.+| .|+|+
T Consensus 291 ~t--k~ElL-----~QEGHs~~v~~----iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~-I~~V-~fsPN 356 (459)
T KOG0272|consen 291 ET--KSELL-----LQEGHSKGVFS----IAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKE-ILSV-AFSPN 356 (459)
T ss_pred cc--chhhH-----hhcccccccce----eEecCCCceeeccCccchhheeecccCc-EEEEecccccc-eeeE-eECCC
Confidence 77 32222 36899999998 9999999999999999999999999999 99999998776 9999 78999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
|..+++|+.|++++|||+|.... +. ...+|.+-|+.|+|+|. .|.+|+|++.|++++||..++. .+++++.+|.
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~-ly---~ipAH~nlVS~Vk~~p~-~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe 430 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSE-LY---TIPAHSNLVSQVKYSPQ-EGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHE 430 (459)
T ss_pred ceEEeecCCCCcEEEeeeccccc-ce---ecccccchhhheEeccc-CCeEEEEcccCcceeeecCCCc-ccchhhcCCc
Confidence 99999999999999999998884 43 34477899999999995 6999999999999999999998 8999999999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.|.++++++++.++++++.|+++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-30 Score=279.67 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=253.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...|+.+-|+|+...++++++|++|++||+.+|+....+++|. ..+.++.| +..|.+|++++.|=.+++||..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT---DSVFDISF--DASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc---cceeEEEE--ecCccEEEecCCccchhheeHHH
Confidence 34689999999999999999999999999999999999999999 88999999 67899999999998899999854
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
. ..+.+.+.+|...|.+ ++|-|.+.+|++++.|.+|+.||+.++. ++.++.+|.+. |..+ ....||.
T Consensus 182 ~------~~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ew-vr~v-~v~~DGt 248 (406)
T KOG0295|consen 182 F------FRCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEW-VRMV-RVNQDGT 248 (406)
T ss_pred H------HHHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecccce-eEEeccCchHh-EEEE-EecCCee
Confidence 1 2233667889888888 8888999999999999999999999999 99999999885 8888 6678999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------------CCCCEEEEEECCCcEEEEEcCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------------LDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~-------------~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
++++++.|.+|++|-+.++++ .. ..++|...|-+++|-|. .++.++++++.|++|++||+.++
T Consensus 249 i~As~s~dqtl~vW~~~t~~~-k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQC-KA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred EEEecCCCceEEEEEeccchh-hh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999999999999999998862 22 34577789999999775 13469999999999999999998
Q ss_pred CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.++.++.+|...|+.++|||.|++|+++.+|++++|||+ ++.++..+.. |+ .-|++++|+.+..+++||+
T Consensus 325 -~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~-------hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 325 -MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HE-------HFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred -eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-Cc-------ceeEEEecCCCCceEEecc
Confidence 899999999999999999999999999999999999995 5677788877 76 6699999999999999999
Q ss_pred CCCeEEEcC
Q 000697 1340 ADACVSIHS 1348 (1348)
Q Consensus 1340 ~Dg~I~IWd 1348 (1348)
-|..+++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999994
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-28 Score=259.84 Aligned_cols=289 Identities=16% Similarity=0.231 Sum_probs=236.8
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECC-----CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYE-----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~-----t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
..|.+.|+.++..+.+ +.+++++.|.++.+|++. .|..++.+.+|. ..|+.+.. ++||++.++++.||+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~--s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVL--SSDGNFALSASWDGT 86 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc---eEecceEE--ccCCceEEeccccce
Confidence 4577889999998875 488899999999999764 467889999999 89999998 789999999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~-~~~Vts 1184 (1348)
+++||+.. ++.. +.+.+|...|.+ +++++++.++++|+.|++|++||+..+. ..++..+. ...|+|
T Consensus 87 lrlWDl~~--g~~t-----~~f~GH~~dVls----va~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 87 LRLWDLAT--GEST-----RRFVGHTKDVLS----VAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEEecC--CcEE-----EEEEecCCceEE----EEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEE
Confidence 99999977 4333 447899999988 9999999999999999999999987764 55555543 556999
Q ss_pred EEEecCC--CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc
Q 000697 1185 LTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1185 L~~~s~d--g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~ 1262 (1348)
+ .++|+ ..+|++++.|++|++||+++-+ ... .+.+|.+.++.++++|+ |...++|+.||.+.+||++.+ +
T Consensus 154 v-rfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~---~~~gh~~~v~t~~vSpD--GslcasGgkdg~~~LwdL~~~-k 225 (315)
T KOG0279|consen 154 V-RFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRT---TFIGHSGYVNTVTVSPD--GSLCASGGKDGEAMLWDLNEG-K 225 (315)
T ss_pred E-EEcCCCCCcEEEEccCCceEEEEccCCcc-hhh---ccccccccEEEEEECCC--CCEEecCCCCceEEEEEccCC-c
Confidence 9 55565 6799999999999999999876 332 45688999999999999 999999999999999999988 6
Q ss_pred ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcc-cccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1263 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-MAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f-~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.+.++. |...|.+++|+|+...|+.+... .|+|||++ +..+..++....+. .........+++|+++|..|++|..
T Consensus 226 ~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 676665 77899999999998888877654 59999954 45555554311111 0111234567899999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
|+.|++|.
T Consensus 304 d~~irv~q 311 (315)
T KOG0279|consen 304 DNVIRVWQ 311 (315)
T ss_pred CCcEEEEE
Confidence 99999993
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.7e-27 Score=267.00 Aligned_cols=282 Identities=25% Similarity=0.444 Sum_probs=240.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|...|++++|+|++++|++++.+|.|++|+..+++....+..|. ..+..+.| .++++++++++.||.|++|++.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA--SADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE--CCCCCEEEEEcCCCeEEEEEcC
Confidence 467899999999999999999999999999999988888888888 78889999 6788999999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ++. . ..+..|...+.+ +.|++++..+++++.+|.|++||+++.+ .+..+..|... |.++ .+.+++
T Consensus 82 ~--~~~--~---~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~ 147 (289)
T cd00200 82 T--GEC--V---RTLTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDW-VNSV-AFSPDG 147 (289)
T ss_pred c--ccc--e---EEEeccCCcEEE----EEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCc-EEEE-EEcCcC
Confidence 5 221 1 234567767776 8899887777777779999999999887 78888866554 9999 566778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++++.||.|++||++..+ ....+. .|...|.++.|+|+ ++.+++++.||.|++||++.+ ..+..+..|..
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~ 220 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGK-CVATLT---GHTGEVNSVAFSPD--GEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHEN 220 (289)
T ss_pred CEEEEEcCCCcEEEEEccccc-cceeEe---cCccccceEEECCC--cCEEEEecCCCcEEEEECCCC-ceecchhhcCC
Confidence 888888889999999999776 344333 55679999999999 889999999999999999986 78888878999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.++.|++++.++++++.||.|++|+.. ++.+..+.. |. ..|.+++|++++.+|++++.||.|++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HT-------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cC-------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999889999999965 677777766 54 6899999999999999999999999997
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.6e-28 Score=273.01 Aligned_cols=279 Identities=18% Similarity=0.272 Sum_probs=241.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...|++++|+.+|..||+|+.||.++||+.. |.++.++..|. ++|.++.| +.+|.+|++++.||++.+||..+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~- 307 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHT- 307 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC---CceEEEEE--cCCCCEEEeccCCccEEEEeccC-
Confidence 4679999999999999999999999999976 88889999999 99999999 78999999999999999999966
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
+..... +.-|..+... +.|. +...+++++.||.|+|+-+.... ++.++.+|++. |.+| -+.+.|.+
T Consensus 308 -g~~~q~-----f~~~s~~~lD----VdW~-~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~-V~al-k~n~tg~L 373 (524)
T KOG0273|consen 308 -GTVKQQ-----FEFHSAPALD----VDWQ-SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE-VNAL-KWNPTGSL 373 (524)
T ss_pred -ceEEEe-----eeeccCCccc----eEEe-cCceEeecCCCceEEEEEecCCC-cceeeecccCc-eEEE-EECCCCce
Confidence 444333 4445544333 8897 46778888999999999999888 99999998776 9999 67789999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------CCCCEEEEEECCCcEEEEEcCCCCcceEEE
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------LDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~-------~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~ 1267 (1348)
|++++.|++++||.+.... ... .+.+|...|..+.|+|. ..+..+++++.|++|++||+..+ .++.++
T Consensus 374 LaS~SdD~TlkiWs~~~~~-~~~---~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f 448 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSN-SVH---DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTL 448 (524)
T ss_pred EEEecCCCeeEeeecCCCc-chh---hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEee
Confidence 9999999999999987665 333 34467799999999997 13457999999999999999998 899999
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1268 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1268 ~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|..+|.+++|+|+|+++|+|+.||.|.+|++ .++.++.... .+.|..++|+.+|..|..+..||.+.+
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---------~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---------TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---------CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 999999999999999999999999999999994 5777777765 257999999999999999999999887
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
-|
T Consensus 520 ld 521 (524)
T KOG0273|consen 520 LD 521 (524)
T ss_pred EE
Confidence 43
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=282.41 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=249.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...|.++.|||.+++++++-.+|.|.|||+++...+++|+..+ .+|.+..|+ ...+.+++|++|..||||+..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheee--eccceEEEecCCceEEEEeccc
Confidence 45789999999999999999999999999999999999999888 789999996 5778999999999999999865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.+.+ +.+..|..-+++ ++.+|...+++++++|-.|++||.+.+-.|.+++.+|... |.++++.+.|.+
T Consensus 87 ----~ekV---~~FeAH~DyIR~----iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-VMqv~fnPkD~n 154 (794)
T KOG0276|consen 87 ----GEKV---KTFEAHSDYIRS----IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-VMQVAFNPKDPN 154 (794)
T ss_pred ----ceee---EEeeccccceee----eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE-EEEEEecCCCcc
Confidence 3334 567899999999 8889999999999999999999999876588999998876 999988888999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.|++++-|++|+||.+.+.. ... ++++|...|+++.+-+.++..+|++|+.|.+|+|||..+. .+++++.+|...
T Consensus 155 tFaS~sLDrTVKVWslgs~~-~nf---Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N 229 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH-PNF---TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN 229 (794)
T ss_pred ceeeeeccccEEEEEcCCCC-Cce---eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc
Confidence 99999999999999999887 444 3458889999999988745679999999999999999997 899999999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
|+.+.|||.-+++++||.||+++||+.. -+...++.. ..+.|+|++-++.+..++.|...|.|.|
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999999943 333334433 2378999999999999999988887754
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=5.6e-28 Score=259.77 Aligned_cols=280 Identities=19% Similarity=0.317 Sum_probs=236.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~-t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.|++.|..+.|+|+|.+||+|+.|..|.+|+.. ..+-...+++|. +.|..+.| ..|++.|+++|.|++|+.||+
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---GAVMELHG--MRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc---ceeEeeee--ccCCCEEEEecCCceEEEEec
Confidence 467899999999999999999999999999954 446667788999 99999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
++ |+.. +..++|...|+. ++-..-+..++++ ++||++++||+++.. +++++... ..++++ .+..
T Consensus 120 ~t--G~~~-----rk~k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~k--yqltAv-~f~d 184 (338)
T KOG0265|consen 120 ET--GKRI-----RKHKGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENK--YQLTAV-GFKD 184 (338)
T ss_pred cc--ceee-----ehhccccceeee----cCccccCCeEEEecCCCceEEEEeecccc-hhhccccc--eeEEEE-Eecc
Confidence 77 4433 457888888877 4433445555555 689999999999988 88888653 348999 5667
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC---CcceEEE
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---KDAYLTI 1267 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~---~~~v~t~ 1267 (1348)
.+..+.+|+-|+.|++||+|.++ ...+ ..||.+.|+.+..+|. |.++.+-+.|.++++||++.. ..++..+
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d-~~~~---lsGh~DtIt~lsls~~--gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKND-GLYT---LSGHADTITGLSLSRY--GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccceeeccccCceeeeccccCc-ceEE---eecccCceeeEEeccC--CCccccccccceEEEEEecccCCCCceEEEe
Confidence 88899999999999999999888 4443 4578899999999999 999999999999999999853 2457788
Q ss_pred ecCC----CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1268 DAHR----GSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1268 ~~h~----~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.+|. .....++|+|++..+.+|+.|+.+++||..+ ..+..+.+ |. +.|++++|||...+|.+++.|.
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~-------gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HY-------GSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cc-------eeEEEeeecCCCcEEEEeccCc
Confidence 8763 3456789999999999999999999999665 66777777 54 8999999999999999999999
Q ss_pred eEEE
Q 000697 1343 CVSI 1346 (1348)
Q Consensus 1343 ~I~I 1346 (1348)
+|.+
T Consensus 331 ~i~l 334 (338)
T KOG0265|consen 331 TIYL 334 (338)
T ss_pred eeEe
Confidence 9875
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=265.94 Aligned_cols=286 Identities=19% Similarity=0.326 Sum_probs=247.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.+|. ..|..+++ ++...||++++.|+.|+.||++
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi---~~vr~vav--S~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI---ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh---heeeeeee--cccCceEEEecCCCeeEEEech
Confidence 466889999999999999999999999999999999999999999 89999999 7788999999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .+.+ +.+.||...|.+ ++.+|.-..|++||.|.++||||+++.. .+..+.+|... |.++ .+++..
T Consensus 224 ~----nkvI---R~YhGHlS~V~~----L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~-V~~V-~~~~~d 289 (460)
T KOG0285|consen 224 Y----NKVI---RHYHGHLSGVYC----LDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP-VASV-MCQPTD 289 (460)
T ss_pred h----hhhH---HHhccccceeEE----EeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCc-ceeE-EeecCC
Confidence 5 2333 678899999988 8889999999999999999999999999 99999999776 9999 666677
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
..+++|+.|++|++||++.++.+. +...|+..|.+++.+|. ...+++++.| .|+-|++..+ ..+..+.+|..
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~--e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~ 361 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPK--ENLFASASPD-NIKQWKLPEG-EFLQNLSGHNA 361 (460)
T ss_pred CceEEecCCceEEEeeeccCceeE----eeecccceeeEEecCCc--hhhhhccCCc-cceeccCCcc-chhhccccccc
Confidence 789999999999999999998544 33467799999999999 8899999887 6999999988 77788999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc--CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH--HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~--h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-|.+++...|+ ++++|+++|.+.+|| -+|...+..... ..+. .....|.+.+|...|..|++|..|.+|++|.
T Consensus 362 iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl--~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL--ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc--ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 99999999775 888999999999999 455444433210 1111 2345789999999999999999999999994
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=279.84 Aligned_cols=288 Identities=18% Similarity=0.306 Sum_probs=247.2
Q ss_pred CCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d-g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..|..++|+..|++||.|+.. |.+-||+|++...+-..++|. ..++++++ ++||.+++||++||.|+|||...
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~S- 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQS- 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc---cceeeEEE--CCCCcEEEeccCCCcEEEEeccC-
Confidence 678999999999999998854 899999999998888899999 89999999 89999999999999999999855
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
+ .|+.++..|+..|+. +.|+..+..+++++-||+|+.||+.+.. +.+++.........|+ ..++.|.+
T Consensus 382 -g-----fC~vTFteHts~Vt~----v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~Qfscv-avD~sGel 449 (893)
T KOG0291|consen 382 -G-----FCFVTFTEHTSGVTA----VQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCV-AVDPSGEL 449 (893)
T ss_pred -c-----eEEEEeccCCCceEE----EEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEE-EEcCCCCE
Confidence 3 234678999999998 9999999999999999999999999999 8999988766667888 66788999
Q ss_pred EEEEeCCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1195 LAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1195 LvsGs~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
+++|+.|. .|.+|++++++ ... ...||+++|.+++|+|. +..|++||.|.+|++||+-.....+.++. +...
T Consensus 450 V~AG~~d~F~IfvWS~qTGq-llD---iLsGHEgPVs~l~f~~~--~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sd 522 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQ-LLD---ILSGHEGPVSGLSFSPD--GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSD 522 (893)
T ss_pred EEeeccceEEEEEEEeecCe-eee---hhcCCCCcceeeEEccc--cCeEEeccccceEEEEEeeccCceeeeEe-eccc
Confidence 99999886 59999999998 443 55688999999999999 99999999999999999976544566665 5667
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCc---------c---cccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPS---------F---MAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~---------f---~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+..++|+|+|+-+|+++.||.|.+|| ..+..+..+.+.++. + ........+.+++++||+.+++||.
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 99999999999999999999999999 445555555442111 1 1123467899999999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
.+.|++|+
T Consensus 603 sn~iCiY~ 610 (893)
T KOG0291|consen 603 SNSICIYD 610 (893)
T ss_pred cccEEEEE
Confidence 99999986
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=9.7e-28 Score=270.42 Aligned_cols=282 Identities=21% Similarity=0.368 Sum_probs=239.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--c--EEEEee------CCC-CCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1034 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED--T--LLNSFD------NHD-FPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~--~--~l~~~~------~h~-~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
|...|.+.+|+|-.. .|++|+.|-+.++|++... . ....++ ++. +....|++++| +.+|.+|++|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEee
Confidence 778999999999877 9999999999999998741 1 111111 111 22368999999 78999999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
.||.++||+... . ++ .++..|.++|.+ +.|+..|.+|++++.||++.+||..+++ ..+.+..|...
T Consensus 255 ~~G~~riw~~~G---~--l~---~tl~~HkgPI~s----lKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~- 320 (524)
T KOG0273|consen 255 EDGEARIWNKDG---N--LI---STLGQHKGPIFS----LKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAP- 320 (524)
T ss_pred cCcEEEEEecCc---h--hh---hhhhccCCceEE----EEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCC-
Confidence 999999999743 2 22 457889999988 9999999999999999999999999998 77777776553
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
-..+.|. +...|++.+.||.|+|+-+.... ++.++ .+|.+.|.++.|+|. +..|+++|.|++++||.+...
T Consensus 321 ~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t~---~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 321 ALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKTF---IGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred ccceEEe--cCceEeecCCCceEEEEEecCCC-cceee---ecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-
Confidence 4556454 46789999999999999998776 44433 468899999999999 999999999999999998877
Q ss_pred cceEEEecCCCCeEEEEEeCCCC---------EEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAP---------IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~---------~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.....+.+|...|..+.|+|.|+ .+++++.|++|++|| .+|.++..+.. |. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~-------~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQ-------EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CC-------CceEEEEecCC
Confidence 78899999999999999999654 789999999999999 67999999987 65 89999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000697 1332 QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 g~~Latgs~Dg~I~IWd 1348 (1348)
|+++|+|+.||.|.||+
T Consensus 464 g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWS 480 (524)
T ss_pred CcEEEecCCCCeeEecc
Confidence 99999999999999996
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.9e-27 Score=277.08 Aligned_cols=287 Identities=14% Similarity=0.258 Sum_probs=250.5
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-CeE
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1106 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1106 (1348)
+.|-.+.+..+++.+||+.-+.|++|-..|...+|.+..-.+++.+.... .+|..+.| +..|+.|+.|+.. |.+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~--N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSF--NSTGDWIAFGCSKLGQL 332 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEe--cccCCEEEEcCCccceE
Confidence 44666666899999999999999999999999999999999999999887 78999999 6789999998765 899
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
-||++.. ....+ ..++|...+.+ ++++|||..+++|++||.|+|||..++- |..++..|... |+.+
T Consensus 333 lVweWqs--EsYVl-----KQQgH~~~i~~----l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~-Vt~v- 398 (893)
T KOG0291|consen 333 LVWEWQS--ESYVL-----KQQGHSDRITS----LAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSG-VTAV- 398 (893)
T ss_pred EEEEeec--cceee-----eccccccceee----EEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCc-eEEE-
Confidence 9999966 32222 36789999988 9999999999999999999999999999 99999999887 9999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~ 1265 (1348)
.+...|+.+++.+.||+||.||+.... ..+++.... .....|++..|. |..++.|+.|.. |.+|++.++ +.+.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~--p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTG-qllD 472 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPE--PIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTG-QLLD 472 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCC--ceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecC-eeee
Confidence 677899999999999999999998776 556553321 345678999998 999999988864 999999998 8999
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
.+.+|+++|.+++|+|++..||+||.|++|++||+-+ ..+.++.. ...+..++|+|+|+-||+++.||.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccceeEEEEcCCCCeEEEEEecce
Confidence 9999999999999999999999999999999999432 35566654 256999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+||
T Consensus 544 Itf~d 548 (893)
T KOG0291|consen 544 ITFFD 548 (893)
T ss_pred EEEEE
Confidence 99997
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.3e-26 Score=300.98 Aligned_cols=290 Identities=17% Similarity=0.279 Sum_probs=232.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|.+.|.+++|+|+|++||+|+.|+.|+|||..+. . .+..+.. . ..|.+++|. ..++.+|++++.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~~v~~l~~~-~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R---SKLSGICWN-SYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c---CceeeEEec-cCCCCEEEEEeCCCe
Confidence 6788999999999999999999999999997532 1 1222332 2 478999994 346789999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
|++||+.+ ++ .+ ..+.+|...|.+ ++|++ ++..|++|+.||.|++||++++. ++..+..+ . .|.+
T Consensus 557 v~lWd~~~--~~--~~---~~~~~H~~~V~~----l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~-~v~~ 622 (793)
T PLN00181 557 VQVWDVAR--SQ--LV---TEMKEHEKRVWS----IDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-A-NICC 622 (793)
T ss_pred EEEEECCC--Ce--EE---EEecCCCCCEEE----EEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-C-CeEE
Confidence 99999965 22 22 346789998888 99986 56788999999999999999988 88888754 3 4888
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC----
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---- 1260 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~---- 1260 (1348)
+.+.++++.+|++|+.||.|++||++........ ..+|...|.++.|. + +..|++++.||.|++||++..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~--~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-D--SSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-C--CCEEEEEECCCEEEEEeCCCCcccc
Confidence 8666778999999999999999999976533333 34678999999997 4 789999999999999999843
Q ss_pred -CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCc-c----cccccCCeEEEEEeCCCC
Q 000697 1261 -KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPS-F----MAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1261 -~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~-f----~~~~~~~Vtslafspdg~ 1333 (1348)
..++.++.+|...+.+++|++++.+|++|+.|+.|++|+.. +..+..+...+.. . ...+...|.+++|++++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 25788999999999999999999999999999999999953 3333332210110 0 112345799999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000697 1334 LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1334 ~Latgs~Dg~I~IWd 1348 (1348)
+|++|+.||.|+||+
T Consensus 777 ~lva~~~dG~I~i~~ 791 (793)
T PLN00181 777 TLVAANSTGNIKILE 791 (793)
T ss_pred eEEEecCCCcEEEEe
Confidence 999999999999996
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=287.72 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=247.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
+...|.++.|+++|..+++++.++.+++|+..+++ ....+.+|. ..|.+++| ++++.++++|+.|++|+|||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc---cceeeeEE--CCCCcEEEEecCCceEEEeec
Confidence 34689999999999999999999999999998777 677778888 89999999 889999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .+. .+ +++.+|...|.+ ++|++++..+++|+.|++|+|||+++++ ++..+.+|.+. |+++ .++++
T Consensus 233 ~~-~~~--~~---~~l~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-is~~-~f~~d 299 (456)
T KOG0266|consen 233 KD-DGR--NL---KTLKGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-ISGL-AFSPD 299 (456)
T ss_pred cC-CCe--EE---EEecCCCCceEE----EEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc-eEEE-EECCC
Confidence 33 122 22 568899999987 9999999999999999999999999999 99999999886 9999 88999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+++|++++.||.|++||+.++... ...+....... .+++++|+|+ +.++++++.|+.+++||++.. ..+..+.+|
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~--~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~ 375 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPN--GKYLLSASLDRTLKLWDLRSG-KSVGTYTGH 375 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCC--CcEEEEecCCCeEEEEEccCC-cceeeeccc
Confidence 999999999999999999998832 23333333222 6999999999 999999999999999999988 788899998
Q ss_pred CCCe---EEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE--CCCeE
Q 000697 1271 RGSL---SALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS--ADACV 1344 (1348)
Q Consensus 1271 ~~~V---tsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs--~Dg~I 1344 (1348)
...+ .+...++.+.++++|+.|+.|++||.. +..+..+.+ |. ...+..+++++...++++++ .|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-h~------~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-HS------KAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-CC------CCceeccccCCCcCeeeecCcCCCceE
Confidence 7753 344557789999999999999999965 777777777 52 37899999999999999998 69999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
++|.
T Consensus 449 ~~w~ 452 (456)
T KOG0266|consen 449 RLWK 452 (456)
T ss_pred EEec
Confidence 9994
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=3.8e-28 Score=289.66 Aligned_cols=269 Identities=19% Similarity=0.321 Sum_probs=228.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...++|..|++|+.+||.|-.|..|++|.+... .++.++... +. ..+=+++.|-.+.+-|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~----------~l-----~~~d~~sad~~~~~~D~~~- 440 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS----------DL-----SNIDTESADVDVDMLDDDS- 440 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh----------hh-----ccccccccchhhhhccccC-
Confidence 478999999999999999999999999998754 333343322 11 1122344444455555433
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
.... +.+.+|.++|.+ +.|+|+..+|++++.|++||+|.+.+.. ++..+++|.. +|+.+ .+.|.|-+
T Consensus 441 --~~~~----~~L~GH~GPVyg----~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwdV-~F~P~GyY 507 (707)
T KOG0263|consen 441 --SGTS----RTLYGHSGPVYG----CSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWDV-QFAPRGYY 507 (707)
T ss_pred --Ccee----EEeecCCCceee----eeecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceeeE-EecCCceE
Confidence 1111 347899999999 8999999999999999999999999999 9999997755 59999 57799999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
|++++.|++-++|...... ..+ .+.+|.+.|.|+.|+|+ ..++++||.|.+|++||+.++ ..++.|.+|.++|
T Consensus 508 Fatas~D~tArLWs~d~~~-PlR---ifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNK-PLR---IFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPV 580 (707)
T ss_pred EEecCCCceeeeeecccCC-chh---hhcccccccceEEECCc--ccccccCCCCceEEEEEcCCC-cEEEEecCCCCce
Confidence 9999999999999988766 444 44578899999999999 999999999999999999998 8999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++++|+|+|++||+|+.||.|++||+ .|+.+..+++ |. +.|.++.|+.+|..||+||.|++|++||
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht-------~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HT-------GTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-cc-------CceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999999999999999999999995 5688888888 65 8999999999999999999999999997
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=241.95 Aligned_cols=253 Identities=15% Similarity=0.266 Sum_probs=218.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+.|+.+.+.|+++.||+|+ .-.||+||+.+++ .+.+|.+|. ..|+++.| +.+|..++|||+||++||||++.
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccC---CceEEEEE--eecCeEEEecCCCceEEEEeccC
Confidence 7899999999999999998 6789999998764 689999998 89999999 88999999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
... +..-.|..+|++ +..+|+...|++|..+|.|+|||+.... +...+....+..|.++ ...++|.
T Consensus 115 ----~~~----qR~~~~~spVn~----vvlhpnQteLis~dqsg~irvWDl~~~~-c~~~liPe~~~~i~sl-~v~~dgs 180 (311)
T KOG0315|consen 115 ----LSC----QRNYQHNSPVNT----VVLHPNQTELISGDQSGNIRVWDLGENS-CTHELIPEDDTSIQSL-TVMPDGS 180 (311)
T ss_pred ----ccc----chhccCCCCcce----EEecCCcceEEeecCCCcEEEEEccCCc-cccccCCCCCcceeeE-EEcCCCc
Confidence 111 223456788888 8889999999999999999999999988 7777766666679999 6778999
Q ss_pred EEEEEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
+++++...|..++|++-.... .......++.|.+.+..+.++|+ +++|+++|.|.+++||+..+.-+.-..+++|.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 999999999999999976431 12222345678899999999999 99999999999999999987645667888999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEec
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~ 1310 (1348)
..+..++||.+|.+|++|+.|+.+++|++ .++.+....+
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 99999999999999999999999999994 5788888887
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=246.37 Aligned_cols=250 Identities=17% Similarity=0.272 Sum_probs=218.6
Q ss_pred CcccccccCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEeeCCCCCCCCeEEEEE
Q 000697 1025 NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCL 1088 (1348)
Q Consensus 1025 ~~i~~Wd~~~~----------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------~~l~~~~~h~~~~~~ItsL~f 1088 (1348)
+..-+||.-+. ..|..++|+|.|+++|.|+-|....||++.+. ...+.+.+|. +-++++.|
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt---gylScC~f 153 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT---GYLSCCRF 153 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc---ceeEEEEE
Confidence 44566876654 45788999999999999999999999999854 4456788999 89999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCC
Q 000697 1089 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1089 ~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
. +...|+|++.|.++.+||+++ ++.. +.+.+|.+.|.+ +++.| +++.+++|+.|+..++||++.+
T Consensus 154 ~---dD~~ilT~SGD~TCalWDie~--g~~~-----~~f~GH~gDV~s----lsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 154 L---DDNHILTGSGDMTCALWDIET--GQQT-----QVFHGHTGDVMS----LSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred c---CCCceEecCCCceEEEEEccc--ceEE-----EEecCCcccEEE----EecCCCCCCeEEecccccceeeeeccCc
Confidence 3 578999999999999999976 4433 448899999988 88888 7888999999999999999999
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. +++++.+|... |+++ .+.|+|.-|++|+.|++.|+||+|... .+..+ .+..-...|++++|+.. |++|.+|.
T Consensus 220 ~-c~qtF~ghesD-INsv-~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~y-s~~~~~~gitSv~FS~S--GRlLfagy 292 (343)
T KOG0286|consen 220 Q-CVQTFEGHESD-INSV-RFFPSGDAFATGSDDATCRLYDLRADQ-ELAVY-SHDSIICGITSVAFSKS--GRLLFAGY 292 (343)
T ss_pred c-eeEeecccccc-cceE-EEccCCCeeeecCCCceeEEEeecCCc-EEeee-ccCcccCCceeEEEccc--ccEEEeee
Confidence 9 99999999877 9999 556899999999999999999999987 44445 33345678999999998 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.|..+.+||.-.+ +.+..+.+|++.|+|+..+|||..+++||.|..++||.
T Consensus 293 ~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999887 78999999999999999999999999999999999994
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.8e-27 Score=275.59 Aligned_cols=297 Identities=24% Similarity=0.374 Sum_probs=229.1
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
+..|...|..+|..++|+|.+.+|++|+.||.++|||+..+.+...|++|. +.|.++.|.+.....+|++|+.|++|
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g---GvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG---GVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC---ceEEEEEeCCccchhheeecCCCceE
Confidence 566888899999999999999999999999999999999999999999999 89999999655566789999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-------------------------------------
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY------------------------------------- 1149 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~------------------------------------- 1149 (1348)
++||+.+. .. +......|.+.|++ +.+.+++..
T Consensus 174 ~vwnl~~~--~t----cl~~~~~H~S~vts----L~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 174 RVWNLNDK--RT----CLHTMILHKSAVTS----LAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred EEEEcccC--ch----HHHHHHhhhhheee----eeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 99999751 11 22445666666666 444444444
Q ss_pred ---------EEEEECCCeEEEEECCCCceee-------------------------------------------------
Q 000697 1150 ---------LYASGEVSSIMLWDLEKEQQMV------------------------------------------------- 1171 (1348)
Q Consensus 1150 ---------Ll~gg~Dg~IrVWDl~t~~~~v------------------------------------------------- 1171 (1348)
++++|.+|.+++||.++++ ++
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~-~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ 322 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGK-CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY 322 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccch-hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence 4444444555555443322 00
Q ss_pred ------------------------------------eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCee
Q 000697 1172 ------------------------------------NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1215 (1348)
Q Consensus 1172 ------------------------------------~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~ 1215 (1348)
+.+.+|.+. |.++..+ ..|.+|++|+.|.++++|.+..+...
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~-vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA-VLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh-eeeeeec-ccCcEEEEecCCceEEEEEecCCcch
Confidence 011223332 5555322 35679999999999999988544433
Q ss_pred eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--c--ce----EEEecCCCCeEEEEEeCCCCEEE
Q 000697 1216 VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--D--AY----LTIDAHRGSLSALAVHRHAPIIA 1287 (1348)
Q Consensus 1216 v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~--~v----~t~~~h~~~VtsLa~spdg~~La 1287 (1348)
........+|.+.|.+++++.. +..+|+++|.|+++++|++...+ . .+ .+...|...|++++++|+.+++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhcccccccceeeeccc-CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 3333345689999999999877 68899999999999999998621 1 11 23457999999999999999999
Q ss_pred EEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|||.|++.+||+++ +....++.+ |. ..|+++.|++..+.|||+|.|++|+||+
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsG-H~-------RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSG-HT-------RGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred ecccccceeeecccCceEEEEeeC-Cc-------cceEEEEeccccceeEeccCCceEEEEE
Confidence 99999999999965 566778888 65 7899999999999999999999999995
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-27 Score=276.40 Aligned_cols=281 Identities=19% Similarity=0.319 Sum_probs=243.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...+..++|||..++++++-..|.|++||++-+.++..|..|+ ++|..++| ++.+.++++||+|..|+||+...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC---Cccceeee--cCCCCeEEecCCccEEEEEeccc-
Confidence 4679999999999999999999999999999999999999999 99999999 78999999999999999999854
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
.++. .++.||..-|+. +.|++.-..|+++++|.+|+||+..+.+ |+..+.+|... |.|- .+.|..+.
T Consensus 83 ---rrcl---ftL~GHlDYVRt----~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHY-VMcA-qFhptEDl 149 (1202)
T KOG0292|consen 83 ---RRCL---FTLLGHLDYVRT----VFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHY-VMCA-QFHPTEDL 149 (1202)
T ss_pred ---ceeh---hhhccccceeEE----eeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceE-EEee-ccCCccce
Confidence 2222 568999999998 9999999999999999999999999999 99999999776 9998 67888999
Q ss_pred EEEEeCCCeEEEEECCCCCe-------------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1195 LAAGFVDGSVRLYDVRTPDM-------------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~-------------------------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
+++++-|.+|||||+..-++ -........||...|+.++|+|. -..|+||+.|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DD 227 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADD 227 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--cceEEecCCc
Confidence 99999999999999863110 00011135689999999999998 8999999999
Q ss_pred CcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEE
Q 000697 1250 GDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1250 G~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
..|++|.+...+ -.+.+.++|.+.|+++-|||+..++++.|.|++|+|||++ .+.+.+++. . .+..+.++
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-e-------ndRFW~la 299 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-E-------NDRFWILA 299 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-c-------CCeEEEEE
Confidence 999999998642 2455778999999999999999999999999999999965 566777765 2 26889999
Q ss_pred EeCCCCEEEEEECCCeE
Q 000697 1328 FHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1328 fspdg~~Latgs~Dg~I 1344 (1348)
-||..+++|+|...|.+
T Consensus 300 ahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ecCCcceeeeecCCceE
Confidence 99999999888655543
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.9e-26 Score=244.58 Aligned_cols=254 Identities=21% Similarity=0.305 Sum_probs=216.3
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
....++++|. +.|+.++.. ..+.+.+++++.|.++.+|++...+ .+.-...+.+.||...|.. +..++++
T Consensus 6 ~l~~tl~gh~---d~Vt~la~~-~~~~~~l~sasrDk~ii~W~L~~dd--~~~G~~~r~~~GHsH~v~d----v~~s~dg 75 (315)
T KOG0279|consen 6 VLRGTLEGHT---DWVTALAIK-IKNSDILVSASRDKTIIVWKLTSDD--IKYGVPVRRLTGHSHFVSD----VVLSSDG 75 (315)
T ss_pred eeeeeecCCC---ceEEEEEee-cCCCceEEEcccceEEEEEEeccCc--cccCceeeeeeccceEecc----eEEccCC
Confidence 4456788999 999999984 3467899999999999999997632 2222223678999999998 7888999
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
.+.++++.||++++||+.+++ ..+.+.+|... |.++ .++++.+.+++|+.|.+|++|+..... ..... ...|.+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~d-Vlsv-a~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~--~~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGE-STRRFVGHTKD-VLSV-AFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIH--EDSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCc-EEEEEEecCCc-eEEE-EecCCCceeecCCCcceeeeeeecccE-EEEEe--cCCCcC
Confidence 999999999999999999998 89999999887 9999 788999999999999999999998765 33222 223379
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLG 1306 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~ 1306 (1348)
+|.+++|+|.....+|++++.|++|++||+++. +....+.+|.+.++.++++|||.++++|+.||.+.+||+ +++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 999999999844789999999999999999987 788999999999999999999999999999999999995 567766
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.. ...|.+++|+|+.-.|+.+. +..|+|||
T Consensus 229 sl~a---------~~~v~sl~fspnrywL~~at-~~sIkIwd 260 (315)
T KOG0279|consen 229 SLEA---------FDIVNSLCFSPNRYWLCAAT-ATSIKIWD 260 (315)
T ss_pred eccC---------CCeEeeEEecCCceeEeecc-CCceEEEe
Confidence 6653 37899999999988887765 55699997
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=270.50 Aligned_cols=288 Identities=16% Similarity=0.258 Sum_probs=239.0
Q ss_pred ccccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000697 1027 IACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1104 (1348)
+..|. .|..+|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|. .+|.+++| +.+|..++++|.|+
T Consensus 207 ~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~--s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASF--NNCGTSFLSASFDR 280 (503)
T ss_pred eeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhc--cccCCeeeeeecce
Confidence 44553 4678999999999 888999999999999999875 89999999999 99999999 78999999999999
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
.|++||.++ |+... .-|.+.+.. ++.|+|++ ..+++|+.|+.|+.||+++++ .++++..|-+. |.
T Consensus 281 ~lKlwDtET--G~~~~-------~f~~~~~~~---cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~-i~ 346 (503)
T KOG0282|consen 281 FLKLWDTET--GQVLS-------RFHLDKVPT---CVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGA-IL 346 (503)
T ss_pred eeeeecccc--ceEEE-------EEecCCCce---eeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhh-ee
Confidence 999999987 44321 123333322 48999998 678888899999999999999 88888877766 99
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1261 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-- 1261 (1348)
.+. +-++|..|++.+.|++++||+.+.+-.+...... +.....++..+|. +.++++-+.|..|.+|.+...-
T Consensus 347 ~i~-F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---~~hsmP~~~~~P~--~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 347 DIT-FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---EMHTMPCLTLHPN--GKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeE-EccCCceEeeeccCccEEEEEcCCCccchhhcch---hhccCcceecCCC--CCeehhhccCceEEEEeccccccc
Confidence 994 5578999999999999999999987633322211 2245778999999 9999999999999999976431
Q ss_pred cceEEEecCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEE
Q 000697 1262 DAYLTIDAHR--GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAA 1337 (1348)
Q Consensus 1262 ~~v~t~~~h~--~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Lat 1337 (1348)
...+.+.+|. +.-..+.|||||.+|++|+.||.+.+||. +.+.+..++. |+ +++..+.|||.. ..+||
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~-------~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HD-------QPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CC-------cceEEEEecCCCcceeEe
Confidence 3445677774 55678899999999999999999999994 5677778888 65 899999999987 68999
Q ss_pred EECCCeEEEcC
Q 000697 1338 GSADACVSIHS 1348 (1348)
Q Consensus 1338 gs~Dg~I~IWd 1348 (1348)
|+.||.|++|+
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999997
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=239.09 Aligned_cols=289 Identities=18% Similarity=0.339 Sum_probs=231.7
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCC---cEEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1033 RFEKGTKTALLQPF-SPIVVAADENERIKIWNYEED---TLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1033 ~~~~~I~sl~fspd-g~~Latgs~dg~I~VWd~~t~---~~l~~~-~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
.|.+.+..++|||- |..||+++.|..|+||+...+ .+...+ .+|. ..|.+++| +|.|++|++||.|.++.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk---rsVRsvAw--sp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK---RSVRSVAW--SPHGRYLASASFDATVV 86 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch---heeeeeee--cCCCcEEEEeeccceEE
Confidence 45568999999998 889999999999999998853 333333 3566 89999999 78999999999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL 1185 (1348)
||.-.. +..+.+ .++.||...|++ ++|+.+|.+|++++.|+.|-||.+..+. .+...++.|... |..+
T Consensus 87 Iw~k~~--~efecv---~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-VK~V 156 (312)
T KOG0645|consen 87 IWKKED--GEFECV---ATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-VKHV 156 (312)
T ss_pred EeecCC--CceeEE---eeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-ccEE
Confidence 999865 666665 678999999999 9999999999999999999999987432 377888888877 8888
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
.++|...+|++++.|.+|++|+-.....-... ..+.+|...|.+++|++. |..|++++.|++|+||-....
T Consensus 157 -~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~-~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~~~----- 227 (312)
T KOG0645|consen 157 -IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV-QTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLYTD----- 227 (312)
T ss_pred -EEcCCcceeEEeccCCeEEEEeecCCCCeeEE-EEecCccceEEEEEecCC--CceEEEecCCcceEeeeeccC-----
Confidence 67788899999999999999987743322222 255678899999999999 999999999999999987643
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE-EEEeccCCcccccccCCeEEEEEeCC-CCEEEEEECCCe
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADAC 1343 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l-~~i~~~h~~f~~~~~~~Vtslafspd-g~~Latgs~Dg~ 1343 (1348)
.-..|...+..+.|. ...||+++.|+.|++|.....+. ..+.. -....+.|...|++++|.|. ...|++|+.||.
T Consensus 228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 112367889999998 56899999999999998432110 00000 00011245579999999995 689999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|++|.
T Consensus 305 v~~W~ 309 (312)
T KOG0645|consen 305 VNFWE 309 (312)
T ss_pred EEEEE
Confidence 99994
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=257.62 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=234.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|...|.-+.||++|++||+|+.|.+..||++... +..+++.+|. .+|..+.| +||+++|++++.|..+++|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~w--SPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMW--SPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc---CceEEEEE--CCCCCeEEecCchHheeec
Confidence 35688999999999999999999999999987654 4577888999 89999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
|+.+ |..... --.++...+.+ ++|.||+..+++|+.|+.|..||+..+. ...+++-....|.++ ...
T Consensus 297 Dv~t--gd~~~~----y~~~~~~S~~s----c~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl-ait 363 (519)
T KOG0293|consen 297 DVDT--GDLRHL----YPSGLGFSVSS----CAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL-AIT 363 (519)
T ss_pred cCCc--chhhhh----cccCcCCCcce----eEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE-EEc
Confidence 9977 332211 01223344555 8999999999999999999999998765 666776666679999 778
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
+||..+++.+.|..|++|+..+... ...... ..+|++.+++.+ ++++++.-.+..|++||+... ..++.+.+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lise----~~~its~~iS~d--~k~~LvnL~~qei~LWDl~e~-~lv~kY~G 435 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVD-RGLISE----EQPITSFSISKD--GKLALVNLQDQEIHLWDLEEN-KLVRKYFG 435 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhh-hccccc----cCceeEEEEcCC--CcEEEEEcccCeeEEeecchh-hHHHHhhc
Confidence 8999999999999999999987652 222222 378999999998 999999999999999999976 78888888
Q ss_pred CCCC--eEEEEEeC-CCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeE
Q 000697 1270 HRGS--LSALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1344 (1348)
Q Consensus 1270 h~~~--VtsLa~sp-dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I 1344 (1348)
|+.. +-.-+|-- +..++|+||.|+.|+||+ .+|+.+..+.+ |. ..|++++|+|.. .++|+||.||+|
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs-------~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HS-------KTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-Cc-------ceeeEEecCCCCHHHhhccCCCCeE
Confidence 8653 33334443 347999999999999999 78999999999 76 899999999987 689999999999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
+||.
T Consensus 508 RIWg 511 (519)
T KOG0293|consen 508 RIWG 511 (519)
T ss_pred EEec
Confidence 9994
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=237.98 Aligned_cols=277 Identities=17% Similarity=0.277 Sum_probs=235.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.+++.|.++.|+-||++.++++.|.+|++||...|.+++++.+|. ..|..++. +.|...+++|+.|..|.+||+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC---ceeeeccc--cccccccccCCCCceEEEEEcc
Confidence 356899999999999999999999999999999999999999999 89999998 6789999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
+ |+.. +.+.+|...|+. +.|+.+...+++|+.|.++++||.++.. ++++.+....+. |.++. ..
T Consensus 90 T--Gkv~-----Rr~rgH~aqVNt----V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-V~Si~---v~ 154 (307)
T KOG0316|consen 90 T--GKVD-----RRFRGHLAQVNT----VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-VSSID---VA 154 (307)
T ss_pred c--Ceee-----eecccccceeeE----EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-eeEEE---ec
Confidence 7 5433 568999999998 9999999999999999999999988643 277777777666 88883 35
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
+..+++|+.||++|.||+|.+......+ ..+|++++|+++ ++..+.++.|+++++.|-.++ +.+..+++|.
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~------g~pit~vs~s~d--~nc~La~~l~stlrLlDk~tG-klL~sYkGhk 225 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYF------GHPITSVSFSKD--GNCSLASSLDSTLRLLDKETG-KLLKSYKGHK 225 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhc------CCcceeEEecCC--CCEEEEeeccceeeecccchh-HHHHHhcccc
Confidence 7899999999999999999988333222 368999999999 999999999999999999998 8999999997
Q ss_pred CCeE--EEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCC-eEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1272 GSLS--ALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS-VNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1272 ~~Vt--sLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~-Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..-. ..++......+++||+||.|++|| .++..+..+.. +. .. |.++++||...-|+++. ++.+..|
T Consensus 226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~-------~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VS-------TVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CC-------ceeEEeeecccCccceeEec-CCceece
Confidence 6443 445666777999999999999999 67777777776 44 44 89999999987777775 3444444
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=264.73 Aligned_cols=242 Identities=21% Similarity=0.366 Sum_probs=211.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|...|+++.|+++|.++++|+.+|.|++|+..- ..++.++.|. ...|++++| ++++..++++++||+|+|||..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh--~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHH--AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhh--hhhhheecc--CCCCceeEEecCCCeEEEEecc
Confidence 4678999999999999999999999999998763 3344455443 168999999 7899999999999999999987
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .+.+. .+.+|.-.|++ ++|+|..+.|++||.|..|++||.+++. |+.++..|... |..+ .+++++
T Consensus 211 ~--~kee~-----vL~GHgwdVks----vdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKnt-Vl~~-~f~~n~ 276 (464)
T KOG0284|consen 211 M--PKEER-----VLRGHGWDVKS----VDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNT-VLAV-KFNPNG 276 (464)
T ss_pred C--Cchhh-----eeccCCCCcce----eccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccce-EEEE-EEcCCC
Confidence 6 33343 37899999998 9999999999999999999999999999 99999999887 9999 678899
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1271 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~ 1271 (1348)
++|++++.|..+++||+|+.+. +. ..++|+..|+++.|+|- ...+|.+|+.||.|..|.+... +++..+ .+|.
T Consensus 277 N~Llt~skD~~~kv~DiR~mkE-l~---~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd 350 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKE-LF---TYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHD 350 (464)
T ss_pred CeeEEccCCceEEEEehhHhHH-HH---Hhhcchhhheeeccccc-cccceeeccCCCceEEEecccc-ccccCCCcccc
Confidence 9999999999999999996652 33 45678899999999998 7889999999999999999855 455444 4799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.|++++|||-|.+||+|+.|+++++|.
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999999999999999999997
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.5e-27 Score=255.93 Aligned_cols=275 Identities=17% Similarity=0.288 Sum_probs=224.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+|+|+.+ |+..+++|..|.+|+|||..+..+++.+.+|. +.|.|+.| +...+++|+.|.+|+|||+.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy----d~rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT---GSVLCLQY----DERVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCC---CcEEeeec----cceEEEecCCCceEEEEeccC-
Confidence 468999988 45689999999999999999999999999999 99999999 667999999999999999976
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEecCCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+++ + +++-+|...|.. +.|+ ++++++++.|.+|.|||+.... .+.+.+.+|... |+.+.+ +.
T Consensus 267 -ge~--l---~tlihHceaVLh----lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvVdf---d~ 330 (499)
T KOG0281|consen 267 -GEP--L---NTLIHHCEAVLH----LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF---DD 330 (499)
T ss_pred -Cch--h---hHHhhhcceeEE----EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeeecc---cc
Confidence 432 2 567788888877 6665 7899999999999999998654 144556677665 888833 46
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+++++++.|.+|++|++.+.+ .++++ .+|...|-|+.+. ++++++|+.|.+|++||+..+ .+++.+++|+.
T Consensus 331 kyIVsASgDRTikvW~~st~e-fvRtl---~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEe 401 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-FVRTL---NGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 401 (499)
T ss_pred ceEEEecCCceEEEEecccee-eehhh---hcccccceehhcc----CeEEEecCCCceEEEEecccc-HHHHHHhchHH
Confidence 799999999999999999988 66644 4777899988874 889999999999999999998 89999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEecc-CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYH-HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~-h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-|.++.|. .+.+++|+.||+|+|||+. +......... .--....|.+.|..+.| |...+++++.|.+|.|||
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999995 5789999999999999953 2211100000 00002246689999999 556788999999999997
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=250.75 Aligned_cols=244 Identities=23% Similarity=0.388 Sum_probs=216.6
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
..+.+++|. +.|.|+++ +|.+.++++|+.|++|+|||+.+ ++.++. +.||...|+. +++++...
T Consensus 143 l~rVi~gHl---gWVr~vav--dP~n~wf~tgs~DrtikIwDlat--g~Lklt-----ltGhi~~vr~----vavS~rHp 206 (460)
T KOG0285|consen 143 LYRVISGHL---GWVRSVAV--DPGNEWFATGSADRTIKIWDLAT--GQLKLT-----LTGHIETVRG----VAVSKRHP 206 (460)
T ss_pred ehhhhhhcc---ceEEEEee--CCCceeEEecCCCceeEEEEccc--CeEEEe-----ecchhheeee----eeecccCc
Confidence 345578888 89999999 78899999999999999999987 655544 8899999999 89999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
++++++.|+.|+.||++..+ .++.+.+|-.+ |.|+ ...|.-+.|++|+.|.++||||+|+.. .+.. +.||...
T Consensus 207 YlFs~gedk~VKCwDLe~nk-vIR~YhGHlS~-V~~L-~lhPTldvl~t~grDst~RvWDiRtr~-~V~~---l~GH~~~ 279 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNK-VIRHYHGHLSG-VYCL-DLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHV---LSGHTNP 279 (460)
T ss_pred eEEEecCCCeeEEEechhhh-hHHHhccccce-eEEE-eccccceeEEecCCcceEEEeeecccc-eEEE---ecCCCCc
Confidence 99999999999999999999 99999999887 9999 667888999999999999999999988 4443 4578899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEE
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGT 1307 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~ 1307 (1348)
|.++.++|. ...+++||.|++|++||++.+ +...++..|+..+.+++.||....+|+++.| .|+-|+ ..|..+..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 999999998 889999999999999999998 7888899999999999999999999999987 589999 56777777
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+ |. +-|++++.+.|+ ++++|+..|.+.+||
T Consensus 356 lsg-h~-------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 LSG-HN-------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ccc-cc-------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 776 54 789999988776 677899999999996
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.2e-24 Score=248.07 Aligned_cols=290 Identities=19% Similarity=0.302 Sum_probs=232.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee---CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~---~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|..-|.|+.|+|||.++++++.||+|.|||=.+|+.+..+. +|. +.|.++.| +||+..++|++.|.+++||
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk---GsIfalsW--sPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK---GSIFALSW--SPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc---ccEEEEEE--CCCCceEEEecCCceEEEE
Confidence 355679999999999999999999999999999999999998 666 89999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
|+.+. .++..|..-. .+....+-+-|. ++.|++.+-+|+|.+++..... ....+.+|... |+++ ..+
T Consensus 263 dVs~~----slv~t~~~~~----~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~-ITaL-tv~ 329 (603)
T KOG0318|consen 263 DVSTN----SLVSTWPMGS----TVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKS-ITAL-TVS 329 (603)
T ss_pred Eeecc----ceEEEeecCC----chhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccc-eeEE-EEc
Confidence 99762 3443332111 133323336676 7789999999999999999999 89999999887 9999 678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee----------eEeecCC------------------------CCC----------
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDML----------VCSTRPH------------------------TQQ---------- 1225 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~----------v~~~~~~------------------------~~h---------- 1225 (1348)
+++.+|++|+.||.|.-||..++... +..+... ..+
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 89999999999999999998754311 0000000 000
Q ss_pred ---------------------------------CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecCC
Q 000697 1226 ---------------------------------VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHR 1271 (1348)
Q Consensus 1226 ---------------------------------~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~ 1271 (1348)
.-...+++++|+ +..++.|+.||.|++|.+.... ........|.
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~--~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD--GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC--CCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 012347788888 9999999999999999998652 3334566799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++|++++++|++.+||+|...+.|.+||........-. ..-|.+.|.+++|+|+..++|||+-|..|.||+
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999999996654442211 122458999999999999999999999999995
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.3e-25 Score=242.91 Aligned_cols=287 Identities=14% Similarity=0.238 Sum_probs=231.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.+|...+.+++.+|+.++++||+.|..-.||+..++.....+.+|. ..|+++.| +.+|.+|+||+.+|.|+||+.
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK---DSVt~~~F--shdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK---DSVTCCSF--SHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC---CceEEEEE--ccCceEEEecCCCccEEEEEc
Confidence 4577899999999999999999999999999999999999999999 99999999 899999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+ +..+.. +. ..+..+. -+.|+|.+..+++|+.||.|-+|.+.++. ..+.+.+|... +++= .+.|+
T Consensus 136 st--g~~~~~-----~~---~e~~die-Wl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~-ct~G-~f~pd 201 (399)
T KOG0296|consen 136 ST--GGEQWK-----LD---QEVEDIE-WLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSP-CTCG-EFIPD 201 (399)
T ss_pred cc--CceEEE-----ee---cccCceE-EEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCC-cccc-cccCC
Confidence 77 333222 22 1222222 28999999999999999999999999977 78888887655 7777 56678
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----------------C------------------------------C
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----------------T------------------------------Q 1224 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----------------~------------------------------~ 1224 (1348)
|+.+++|..||+|++||..++.+..+.-... . +
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 9999999999999999999887433222000 0 0
Q ss_pred CCCCeEEEEEecC-CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCC
Q 000697 1225 QVERVVGISFQPG-LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEG 1302 (1348)
Q Consensus 1225 h~~~I~sl~~sp~-~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g 1302 (1348)
+...+.++.+.|. ..-.+.++|+.||+|.|||+... .++..-.|...|+.+.|-+ ..+|++++.+|.|+.|| .+|
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 1111112222221 01356789999999999999965 4555556899999999998 78999999999999999 779
Q ss_pred ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1303 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1303 ~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+..+.+ |. ..|.+++.+|++++++|+|.|++.+||+
T Consensus 359 ~l~~~y~G-H~-------~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 359 QLKFTYTG-HQ-------MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ceEEEEec-Cc-------hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999998 65 8999999999999999999999999984
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=264.07 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=238.3
Q ss_pred CCCeEEEEE-cCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALL-QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~f-spdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|.+|+| .|++++|+++++.+.+++|+..+..+. .+.+|. ..|.++.. ..+|.+|+||+.|.++++|++..
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~---e~vlSL~~--~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT---EAVLSLDV--WSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch---hheeeeee--cccCcEEEEecCCceEEEEEecC
Confidence 467999987 678889999999999999998876654 789999 89999993 25678999999999999999944
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCce----ee----eeecCCCCCCeEE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQ----MV----NPIPSSSDCSISA 1184 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~----~v----~~l~~~~~~~Vts 1184 (1348)
+..+. .+.....+|...|.+ ++++..+ ..++++|.|+++++|++...+. .+ .+...|.. .|+|
T Consensus 397 ~~~~~---~~~a~~~gH~~svga----va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-dIN~ 468 (775)
T KOG0319|consen 397 NCSKS---LCVAQANGHTNSVGA----VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-DINC 468 (775)
T ss_pred Ccchh---hhhhhhcccccccce----eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-cccc
Confidence 22322 234667899999988 5555444 3566678999999999987220 11 12234444 4999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
+ ...++..++++|+.|.+.++|++.... ... .+.||+..|.++.|++. .+.++|+|.|++|+||.+.+. .++
T Consensus 469 V-aia~ndkLiAT~SqDktaKiW~le~~~-l~~---vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~f-SCl 540 (775)
T KOG0319|consen 469 V-AIAPNDKLIATGSQDKTAKIWDLEQLR-LLG---VLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKIWSISTF-SCL 540 (775)
T ss_pred e-EecCCCceEEecccccceeeecccCce-EEE---EeeCCccceEEEEeccc--cceeEeccCCceEEEEEeccc-eee
Confidence 9 788999999999999999999999554 444 45688899999999998 999999999999999999998 899
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+++.+|...|..+.|-.+|+.|++++.||.|++|++ +++++.++.. |. ..|++++-++...+++||+.||.
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~-------DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HN-------DRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-cc-------ceeEEEeecCccceeEecCCCeE
Confidence 999999999999999999999999999999999994 6788888888 65 89999999999999999999999
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99994
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=248.10 Aligned_cols=281 Identities=17% Similarity=0.325 Sum_probs=244.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEe--------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF--------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~--------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
+.+.|..|+|||.+|++|+.||-|.|||+.+|+..+.+ -.++ ..|.|+.| +.|..+|++|+.||.|+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~F--SRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISF--SRDSEMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEee--cccHHHhhccCcCCcEE
Confidence 56889999999999999999999999999999765543 3344 78999999 88999999999999999
Q ss_pred EEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
||++.+ |.+ .+.+. .|+..|++ +.|+.++..+++++.|.++|+--+.+++ ++..+++|+.. |+..
T Consensus 289 vWri~t--G~C-----lRrFdrAHtkGvt~----l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSy-vn~a- 354 (508)
T KOG0275|consen 289 VWRIET--GQC-----LRRFDRAHTKGVTC----LSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSY-VNEA- 354 (508)
T ss_pred EEEEec--chH-----HHHhhhhhccCeeE----EEEccCcchhhcccccceEEEeccccch-hHHHhcCcccc-ccce-
Confidence 999977 432 23343 78999988 9999999999999999999999999999 99999999876 8888
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+.++|+.+++++.||+|++|+.++.+ +..+++.. +...+|.++..-|. +...++++....+|.|.++. ++.+++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~-~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~q--GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPL-GTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNMQ--GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchh-hhhhccCC-CCcccceeEEEcCC-CCceEEEEcCCCeEEEEecc--ceEEee
Confidence 678899999999999999999999988 66667554 45678999999998 67889999999999999988 468888
Q ss_pred EecC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1267 IDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1267 ~~~h---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
+... .+..-+...+|.|.++.+.+.|+.++.|. .+|+.-.++.. |. ..|.+++-||+.+.||+-+.||
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hE-------kdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HE-------KDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cc-------ccccccccCcccchhhhhcccc
Confidence 7643 45677888999999999999999999999 67888778877 65 6788999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999994
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.9e-25 Score=233.82 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=227.4
Q ss_pred eEEEEEcCCCC-EEEEEE-------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1038 TKTALLQPFSP-IVVAAD-------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1038 I~sl~fspdg~-~Latgs-------~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
=.++.|||... +||++. ..|.+.|-+....+-+..+..-. -.+.+..++|. +...+.+++++.||++++|
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Ws-e~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWS-ENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeec-CCCcceEEEEecCceEEEe
Confidence 46789999654 555542 57899999987554444433221 11489999995 4566789999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... .+ +++.+++|...|.+ ++|++..+ .+++++.|++|++||..... .++++.+|... |....+.
T Consensus 89 d~~~~-s~-----Pi~~~kEH~~EV~S----vdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~-Iy~a~~s 156 (311)
T KOG0277|consen 89 DLTMP-SK-----PIHKFKEHKREVYS----VDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSC-IYQAAFS 156 (311)
T ss_pred ccCCC-Cc-----chhHHHhhhhheEE----eccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccE-EEEEecC
Confidence 96431 11 33668999999998 99988755 46666899999999999998 89999997665 9888777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+..+++|++++.||.+++||+|...+... + ..|...|.++.|+.. +.+.+++|+.|+.|+.||+|+.+.++..+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeE-E---EeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeec
Confidence 77899999999999999999997653332 3 355689999999987 789999999999999999999889999999
Q ss_pred cCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC-Cc-eEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeE
Q 000697 1269 AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLE-GE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1344 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~-g~-~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I 1344 (1348)
+|.-.|+.+.|+|+. .+||+++.|-+++|||.. +. .+.+..- |+ .-|.++.|++.. .++|+++.|+.+
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-Ht-------EFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HT-------EFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cc-------eEEeccccccccCceeeecccccce
Confidence 999999999999975 499999999999999944 33 3334443 55 568889998754 789999999999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
+||+
T Consensus 304 ~Vw~ 307 (311)
T KOG0277|consen 304 YVWN 307 (311)
T ss_pred eeec
Confidence 9996
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=6.2e-25 Score=236.43 Aligned_cols=249 Identities=18% Similarity=0.327 Sum_probs=211.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
..+.+|. +.|..+.| +|+|.+|++||.|..|.+|+++...+. +-.+++|.+.|.. +.|..++..+
T Consensus 41 m~l~gh~---geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~----l~~~~d~s~i 105 (338)
T KOG0265|consen 41 MLLPGHK---GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVME----LHGMRDGSHI 105 (338)
T ss_pred hhcCCCc---ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEe----eeeccCCCEE
Confidence 3456787 89999999 789999999999999999998652221 2346799999988 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~ 1230 (1348)
+++|.|++|+.||+++++ +++.+++|.+. |+++.-...+..++.+|+.||++++||+|+.. .++++. .+..++
T Consensus 106 ~S~gtDk~v~~wD~~tG~-~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~----~kyqlt 178 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGK-RIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE----NKYQLT 178 (338)
T ss_pred EEecCCceEEEEecccce-eeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc----cceeEE
Confidence 999999999999999999 99999998776 88884333445678889999999999999887 455442 236899
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC----C-ceE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----G-EQL 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~----g-~~l 1305 (1348)
++.|... +..+.+|+-|+.|++||++.. ....++.+|.++|+.+..+++|.++.+-+.|.++++||+. + ..+
T Consensus 179 Av~f~d~--s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 179 AVGFKDT--SDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred EEEeccc--ccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 9999988 999999999999999999988 8999999999999999999999999999999999999954 3 447
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+.+ |..- -......++|+|++..+.+|+.|..+++||
T Consensus 256 ~if~g-~~hn---feknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 256 KIFQG-HIHN---FEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred EEeec-chhh---hhhhcceeeccCCCCccccccccceEEEee
Confidence 77777 4411 112456779999999999999999999997
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=5.3e-25 Score=262.98 Aligned_cols=253 Identities=21% Similarity=0.316 Sum_probs=218.4
Q ss_pred EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1052 AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1052 tgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
+++.|-.+.+-|-.++...+++.+|. ++|....| +|+.++|++++.|++||+|.+.+ .... -.+.||.
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~---GPVyg~sF--sPd~rfLlScSED~svRLWsl~t--~s~~-----V~y~GH~ 493 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHS---GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDT--WSCL-----VIYKGHL 493 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCC---Cceeeeee--cccccceeeccCCcceeeeeccc--ceeE-----EEecCCC
Confidence 44555557778877777888899999 99999999 79999999999999999999966 2222 3478999
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~ 1211 (1348)
.+|+. +.|+|.|-++++++.|++-++|...... +.+.+.+|-.. |.|+ .++|+.+++++|+.|.+||+||+.+
T Consensus 494 ~PVwd----V~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD-V~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 494 APVWD----VQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD-VDCV-SFHPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred cceee----EEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc-cceE-EECCcccccccCCCCceEEEEEcCC
Confidence 99999 8999999999999999999999999988 89999998777 9999 7889999999999999999999999
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~ 1291 (1348)
+. .++.+ .||.++|++++|+|. |++|++|+.||.|++||+.++ ..+..+.+|.+.|.++.|+.+|.+||+|+.
T Consensus 567 G~-~VRiF---~GH~~~V~al~~Sp~--Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 567 GN-SVRIF---TGHKGPVTALAFSPC--GRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred Cc-EEEEe---cCCCCceEEEEEcCC--CceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 98 67766 478899999999999 999999999999999999998 899999999999999999999999999999
Q ss_pred CCcEEEEEcC---Cc----------------------eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE
Q 000697 1292 KQLIKVFSLE---GE----------------------QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1338 (1348)
Q Consensus 1292 Dg~I~Vwd~~---g~----------------------~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg 1338 (1348)
|.+|++||+. +. .+.++. ....+|.++.|..-+-.|++|
T Consensus 640 DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~--------tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFY--------TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeee--------ecCceEEEEEEeccceeEEec
Confidence 9999999953 11 111111 244689999998777556655
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-24 Score=238.42 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=231.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEecc
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
|...|.++... ++++++|++||.++|||.. |+....+.+|. ++|.+++|+... ....+++++.|.++++|...
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 45667777776 7899999999999999987 89999999999 899999987432 23479999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc------------------------
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------------------------ 1168 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~------------------------ 1168 (1348)
......+.. +.-.||...|.+ +..++++..+++|+.|.+|+||+..+..
T Consensus 178 ~~~~~~~~~---~~~~GHk~~V~s----Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 178 VGENKVKAL---KVCRGHKRSVDS----VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred CchhhhhHH---hHhcccccceeE----EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 633333322 445699999988 7778899999999999999999932211
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
.++..+.+|.+. |.++. +++ ...+++++-|.+|+.||+.++....... + ...++++..+|. .+.|++|+.
T Consensus 251 ~P~vtl~GHt~~-Vs~V~-w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~----~ksl~~i~~~~~--~~Ll~~gss 320 (423)
T KOG0313|consen 251 TPLVTLEGHTEP-VSSVV-WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-T----NKSLNCISYSPL--SKLLASGSS 320 (423)
T ss_pred CceEEecccccc-eeeEE-EcC-CCceEeecccceEEEEEeecccceeeee-c----CcceeEeecccc--cceeeecCC
Confidence 145566777665 99994 443 7789999999999999999988443332 3 268999999998 999999999
Q ss_pred CCcEEEEEcCCCC--cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCe
Q 000697 1249 AGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1249 DG~I~IWDlr~~~--~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
|..+++||.|+++ ....++.+|.+.|.++.|+|... .|++|+.|+++++||++ ..++..+.+ |. ..|
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~-------DKv 392 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HN-------DKV 392 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CC-------ceE
Confidence 9999999999764 45678889999999999999766 78999999999999954 347888888 65 899
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1324 NCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1324 tslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.++.|+ ++..+++||.|++|+|+.
T Consensus 393 l~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 393 LSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEecc-CCceEEeccCcceEEEec
Confidence 999997 466899999999999973
No 44
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=246.30 Aligned_cols=277 Identities=17% Similarity=0.296 Sum_probs=234.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+.|.+++|+|..+ -+|+++ .-.+.||+..+....+++.-.. ..+.++.| ..||.+|++|+..|.|+|+|..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---cceeEEEe--ecCCeEEEccCCcCcEEEecccc
Confidence 37899999999887 355555 5679999998877777666666 78999999 68999999999999999999532
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+ ...+.+.+|..++.. +.|+++++.+++. ++|+.+++||+.+.. ...++.+|.+. |.|.++.+.++
T Consensus 100 ---r----~iLR~~~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDY-VR~g~~~~~~~ 166 (487)
T KOG0310|consen 100 ---R----VILRQLYAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDY-VRCGDISPAND 166 (487)
T ss_pred ---H----HHHHHHhhccCceeE----EEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcce-eEeeccccCCC
Confidence 1 123678899999988 8898888776665 577889999999998 66688999887 99998777788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
.++++|+.||.||+||.|.....+..+ .|..+|-++.+-|. |..|++++. ..|++||+-++++.+.....|..
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lps--gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPS--GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCC--CCEEEEcCC-CeEEEEEecCCceehhhhhcccc
Confidence 899999999999999999885455444 56799999999998 999999885 47999999988777777777999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.|||+.+..++..|++|+-|+.|+||| .+-+.+..+++ .++|.+++.+|++..++.|..||.+.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999 45577777776 379999999999999999999998764
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=3.1e-25 Score=232.53 Aligned_cols=279 Identities=19% Similarity=0.309 Sum_probs=235.8
Q ss_pred cCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fsp---dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.+|. +.|.+... +.+...-++++.|-+-+|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk---gavw~~~l--~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK---GAVWSATL--NKNATRAASAAADFTAKV 85 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC---cceeeeec--Cchhhhhhhhcccchhhh
Confidence 45678899999975 77799999999999999999999999999999 89999888 567778889999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||..+ +.. +. --.|..-|+. ++|+++..+|++||.++.+||||+++.+.+...+.+|.++ |..+.|+
T Consensus 86 w~a~t--gde-lh-----sf~hkhivk~----~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc 152 (334)
T KOG0278|consen 86 WDAVT--GDE-LH-----SFEHKHIVKA----VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWC 152 (334)
T ss_pred hhhhh--hhh-hh-----hhhhhheeee----EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEe
Confidence 99876 221 11 1246666666 9999999999999999999999999887567788888887 8888666
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
. ..+.|++.+.|++||+||.|++. .++.+.. ...|+++.++++ |++|.++. .+.|++||..+. .+++.++
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~----~s~VtSlEvs~d--G~ilTia~-gssV~Fwdaksf-~~lKs~k 222 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGT-EVQSLEF----NSPVTSLEVSQD--GRILTIAY-GSSVKFWDAKSF-GLLKSYK 222 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCc-EEEEEec----CCCCcceeeccC--CCEEEEec-CceeEEeccccc-cceeecc
Confidence 5 45677777999999999999998 5665533 378999999998 88776654 568999999988 6777776
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEE-eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTI-RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i-~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
. ...|.+...+|+..++++|+.|..++.|| .+|+.+..+ ++ | .++|.|+.|+|+|...|+||.||+|++
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-h-------~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-H-------FGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-C-------CCceEEEEECCCCceeeccCCCceEEE
Confidence 4 45699999999999999999999999999 678888775 55 3 489999999999999999999999999
Q ss_pred c
Q 000697 1347 H 1347 (1348)
Q Consensus 1347 W 1347 (1348)
|
T Consensus 294 W 294 (334)
T KOG0278|consen 294 W 294 (334)
T ss_pred E
Confidence 9
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1.1e-25 Score=244.35 Aligned_cols=243 Identities=21% Similarity=0.364 Sum_probs=206.9
Q ss_pred CcccccccC----------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000697 1025 NPIACWDTR----------FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1025 ~~i~~Wd~~----------~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~ 1094 (1348)
.++++||.+ |.+.|.|+.|. .+.+++|+.|.+|+|||+++|+.++++-.|. ..|..+.| ..
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHc---eaVLhlrf----~n 287 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC---EAVLHLRF----SN 287 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhc---ceeEEEEE----eC
Confidence 346778765 45788888884 5699999999999999999999999999999 89999999 45
Q ss_pred CEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee
Q 000697 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1095 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
++++|++.|.+|.|||+.... -++..+.+.||...|+. ++|+ ++++++++.|.+|++|++.+.+ +++++
T Consensus 288 g~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNv----Vdfd--~kyIVsASgDRTikvW~~st~e-fvRtl 356 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTL 356 (499)
T ss_pred CEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheee----eccc--cceEEEecCCceEEEEecccee-eehhh
Confidence 899999999999999996522 23334678899999988 7775 5699999999999999999999 99999
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
.+|..+ |-|+ +-.++++++|+.|.+|++||+..+. +.+ ..+||+.-|.++.|. .+.+++|..||+|++
T Consensus 357 ~gHkRG-IACl---QYr~rlvVSGSSDntIRlwdi~~G~-cLR---vLeGHEeLvRciRFd----~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 357 NGHKRG-IACL---QYRDRLVVSGSSDNTIRLWDIECGA-CLR---VLEGHEELVRCIRFD----NKRIVSGAYDGKIKV 424 (499)
T ss_pred hccccc-ceeh---hccCeEEEecCCCceEEEEeccccH-HHH---HHhchHHhhhheeec----CceeeeccccceEEE
Confidence 999887 8777 4478999999999999999999998 554 445788999999996 569999999999999
Q ss_pred EEcCCCCc--------ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1255 LDIRNHKD--------AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1255 WDlr~~~~--------~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
||+..... ++.++..|.+.|..+.|. ...+++++.|.+|.|||+.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 99986532 456677899999999995 4678889999999999943
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=7.1e-24 Score=224.72 Aligned_cols=280 Identities=19% Similarity=0.333 Sum_probs=229.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|+.+++-+.++.+|++|.+++.|.+..||--.+|+.+.++.+|. +.|.|+.. +.+...++||+.|.++++||+.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT---GAVWCCDI--DWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC---ceEEEEEe--cCCcceeeeccccceeEEEEcC
Confidence 477899999999999999999999999999988999999999999 99999998 5689999999999999999998
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-----CCeEEEEECC-------CCceeeeeecCCCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLE-------KEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg~IrVWDl~-------t~~~~v~~l~~~~~~ 1180 (1348)
+ |++... -.....|+. +.|+.++.+++++.+ .+.|.++|++ .++ +...+..+.+.
T Consensus 83 t--Gk~la~------~k~~~~Vk~----~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~sk 149 (327)
T KOG0643|consen 83 T--GKQLAT------WKTNSPVKR----VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSK 149 (327)
T ss_pred C--CcEEEE------eecCCeeEE----EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccc
Confidence 7 544322 123455666 899998888887754 4679999998 445 67778877655
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
++.. .|.+-+..|++|..||.|..||.+++...+... +.|...|+.++++++ ..++++||.|.+-++||.++.
T Consensus 150 -it~a-~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d--~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 150 -ITSA-LWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRD--RTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred -eeee-eecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCC--cceEEecccCccceeeeccce
Confidence 7777 678899999999999999999999988666543 466789999999999 999999999999999999998
Q ss_pred CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE--------------E-cCCceEEEEeccCCcccccccCCeEE
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF--------------S-LEGEQLGTIRYHHPSFMAQKIGSVNC 1325 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vw--------------d-~~g~~l~~i~~~h~~f~~~~~~~Vts 1325 (1348)
+.++++.. ..+|++.+++|....++.|+.....-|- + +-.+.+..+++ |.++|++
T Consensus 223 -~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--------HFGPINs 292 (327)
T KOG0643|consen 223 -EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--------HFGPINS 292 (327)
T ss_pred -eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--------cccCcce
Confidence 78888874 5689999999987776666532211111 1 11233444444 5699999
Q ss_pred EEEeCCCCEEEEEECCCeEEEc
Q 000697 1326 LTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1326 lafspdg~~Latgs~Dg~I~IW 1347 (1348)
++|||+|+..++|+.||.|++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 9999999999999999999974
No 48
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-23 Score=215.53 Aligned_cols=292 Identities=16% Similarity=0.224 Sum_probs=228.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
...|.+++|+|.|.+.++|+...+++|-.+..-. .-+.-+.|. +.|.|.+| +++|++|+|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk---gsiyc~~w--s~~geliat 106 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK---GSIYCTAW--SPCGELIAT 106 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---ccEEEEEe--cCccCeEEe
Confidence 3579999999999999999999999987543210 111223455 89999999 899999999
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe---cCCCeEEEE-E-CCCeEEEEECCCCceeeeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQSGYLYAS-G-EVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws---~~~~~Ll~g-g-~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
|+.|++|++...... .......--.+.-|.+.|+. ++|- ..++.|+++ | .|..|++-|..+++ ..+.+
T Consensus 107 gsndk~ik~l~fn~d--t~~~~g~dle~nmhdgtird----l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~ 179 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNAD--TCNATGHDLEFNMHDGTIRD----LAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHAL 179 (350)
T ss_pred cCCCceEEEEecccc--cccccCcceeeeecCCceee----eEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceee
Confidence 999999999877542 22211111235668888998 5553 234455554 3 56778888999999 89999
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-CC---CCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-TQ---QVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-~~---h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
.+|.+. |.++- +-++.+|++|+.|.+||+||+|-+. .+.+.... .+ ..+.|.++++.|. |+.|++|-.|.
T Consensus 180 sghtgh-ilaly--swn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps--grll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGH-ILALY--SWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS--GRLLASGHADS 253 (350)
T ss_pred cCCccc-EEEEE--EecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC--cceeeeccCCC
Confidence 999887 98883 4478999999999999999999887 45544221 11 2367999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
...+||+|.+ .+++.+..|...|+|+.|+|...++.+|+.|..|++-|+.|..-..+.. -..+.|...+..+.|||
T Consensus 254 sc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~---~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 254 SCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI---MVVAEHKDKAIQCRWHP 329 (350)
T ss_pred ceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce---EEEEeccCceEEEEecC
Confidence 9999999988 8999999999999999999999999999999999999988765433211 01123457888999999
Q ss_pred CCCEEEEEECCCeEEEcC
Q 000697 1331 YQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1331 dg~~Latgs~Dg~I~IWd 1348 (1348)
..-.+++.+.|.++.+|.
T Consensus 330 ~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWA 347 (350)
T ss_pred ccceeeeccCcceEEEec
Confidence 999899999999999993
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.2e-25 Score=242.18 Aligned_cols=280 Identities=21% Similarity=0.362 Sum_probs=227.8
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|..+|.|++=+|.. ..+++|+.||.|+|||+.+.++..+|+.|. +.|..|++. .+.++++|+|.+|+.|.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~----~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVT----QTSFFTVGDDKTVKQWK 135 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEec----ccceEEecCCcceeeee
Confidence 3467899999999987 689999999999999999999999999999 899999992 37899999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+... .+ +++.+ ...+.+ ++-+..+..++++|. .|-|||..... ++..+.-..+. |.++.+.+.
T Consensus 136 ~~~~-----p~---~tilg-~s~~~g----Idh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dt-i~svkfNpv 198 (433)
T KOG0268|consen 136 IDGP-----PL---HTILG-KSVYLG----IDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADS-ISSVKFNPV 198 (433)
T ss_pred ccCC-----cc---eeeec-cccccc----cccccccccccccCc--eeeecccccCC-ccceeecCCCc-eeEEecCCC
Confidence 8541 11 22221 122222 222223444555443 49999999999 99999988787 999977766
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
...+|+++..|++|.+||+|...+..+.... ..-+.|+|+|. +-.+++|++|..+..||++....++....+|
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeeee-----ccccceecCcc--ccceeeccccccceehhhhhhcccchhhccc
Confidence 7788888889999999999998855444322 34678999998 9999999999999999999988999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.|.+++|+|.|+-+++||.|.+|+||..+...-..+ + |+ .+...|.|+.|+-|.+++++||.|+.|++|.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-Y-ht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-Y-HT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhh-h-hH----hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999999999999999654322222 2 32 3567899999999999999999999999994
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-22 Score=220.40 Aligned_cols=283 Identities=16% Similarity=0.262 Sum_probs=235.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC--CCeEEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIRIW 1109 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~--DG~IrIW 1109 (1348)
......|.++.|+.+|.+|+++++|.+++|||..+++.++++..+. ..|..++|. .....++.++. |.+||.-
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Ft--h~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFT--HHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEe--cCCceEEEccCCCCCceEEE
Confidence 3366889999999999999999999999999999999999999887 789999994 45556666665 8899999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
++.+ . +.+ +.+.||...|.+ ++.+|.+..+++++.|++|++||++..+ |...+..... -+++++
T Consensus 86 sl~d--N--kyl---RYF~GH~~~V~s----L~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~----pi~AfD 149 (311)
T KOG1446|consen 86 SLHD--N--KYL---RYFPGHKKRVNS----LSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGR----PIAAFD 149 (311)
T ss_pred Eeec--C--ceE---EEcCCCCceEEE----EEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCC----cceeEC
Confidence 9976 2 233 679999999999 8888999999999999999999999888 7776665322 234678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC-CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTP-DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~-~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
|.|-++++|...+.|++||+|.- +....++....+.....+.+.|+|+ |+.|+.++..+.+.+.|.-.+ ....++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G-~~~~tfs 226 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDG-TVKSTFS 226 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCC-cEeeeEe
Confidence 99999999999889999999964 3344555333344578999999999 999999999999999999988 7888888
Q ss_pred cCCCCe---EEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1269 AHRGSL---SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1269 ~h~~~V---tsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
.+...- -...|.|+++++.+|+.||+|.+|+ -+|+.+..+++ . +.+++.++.|+|.-.++++++ ..+
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~------~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-P------NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-C------CCCCccccccCCceeeeeecC--ceE
Confidence 775432 5778999999999999999999999 56888888877 2 458999999999988888774 567
Q ss_pred EEc
Q 000697 1345 SIH 1347 (1348)
Q Consensus 1345 ~IW 1347 (1348)
.+|
T Consensus 298 ~fw 300 (311)
T KOG1446|consen 298 VFW 300 (311)
T ss_pred EEE
Confidence 776
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=3.4e-23 Score=271.13 Aligned_cols=266 Identities=16% Similarity=0.231 Sum_probs=206.7
Q ss_pred CCcEEEEECCCCcEEEEe-----eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeE-EeeeecccC
Q 000697 1056 NERIKIWNYEEDTLLNSF-----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL-VTAFSSIQG 1129 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~-----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l-vs~~~~l~~ 1129 (1348)
+|.+++|+..+.+....+ ..|. ..|++++| ++++++|++|+.||.|+||+.......... ......+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~- 530 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSS---NLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA- 530 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCC---CcEEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-
Confidence 455666666544333322 3355 78999999 789999999999999999997531100000 00001122
Q ss_pred CCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1130 HKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1130 h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
+...+.+ ++|++. +..+++++.||+|++||+.+++ .+..+.+|.+. |+++.+.+.++.+|++|+.||.|++||
T Consensus 531 ~~~~v~~----l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 531 SRSKLSG----ICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred ccCceee----EEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 2234444 889764 6788888999999999999988 88888888765 999965556889999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
++++. ....+.. ...|.++.|++. ++.+|++|+.||.|++||+++...++.++.+|...|+++.|. ++.+|++
T Consensus 605 ~~~~~-~~~~~~~----~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGV-SIGTIKT----KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCc-EEEEEec----CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 99877 4444422 257999999664 499999999999999999997645678888999999999997 6789999
Q ss_pred EeCCCcEEEEEcC-------CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GSAKQLIKVFSLE-------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~-------g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.|++|++||+. +..+..+.+ |. ..+.+++|++++.+|++|+.||.|++|+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~-------~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMG-HT-------NVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcC-CC-------CCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999999964 245667776 54 7889999999999999999999999996
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.5e-24 Score=222.39 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=209.1
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+..+..+. +.|.++.| +-||++.+|++.|.+|++|+... ..++ +++.+|...|.. ++-+.++.
T Consensus 9 r~~~l~~~q---gaV~avry--N~dGnY~ltcGsdrtvrLWNp~r----g~li---ktYsghG~EVlD----~~~s~Dns 72 (307)
T KOG0316|consen 9 RLSILDCAQ---GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLR----GALI---KTYSGHGHEVLD----AALSSDNS 72 (307)
T ss_pred hceeecccc---cceEEEEE--ccCCCEEEEcCCCceEEeecccc----ccee---eeecCCCceeee----cccccccc
Confidence 455667777 89999999 78999999999999999999854 3344 678999999988 66677899
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-eeeEeecCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~~h~~ 1227 (1348)
.++++|.|+.|.+||+++++ .++.+.+|... |+.+ .++.+...+++|+.|.++++||.|+.. .+++++.. -..
T Consensus 73 kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~aq-VNtV-~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D 146 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGK-VDRRFRGHLAQ-VNTV-RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKD 146 (307)
T ss_pred ccccCCCCceEEEEEcccCe-eeeecccccce-eeEE-EecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcC
Confidence 99999999999999999999 99999998776 9999 677889999999999999999999764 24554433 348
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLG 1306 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~ 1306 (1348)
.|.++.+. +..|++|+.||+++.||+|.+ ......- ..+|+++.|++++....+++.|+++++.| .+|+.+.
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 89999986 569999999999999999988 4444443 45799999999999999999999999999 7799999
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..++ |. ....-...+++.....+++|++||.|.+||
T Consensus 220 sYkG-hk-----n~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 220 SYKG-HK-----NMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred Hhcc-cc-----cceeeeeeeecccceeEEeccCCceEEEEE
Confidence 9999 76 234556778888889999999999999997
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=246.94 Aligned_cols=280 Identities=15% Similarity=0.254 Sum_probs=238.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|...|.+++++.+...+++|+ .+.|+||+..+.++++++... -+.+..|+ |.+.++++|...|.+.+||+..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFV--PGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred chhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEec--CCCceEEEeccCCceEEEEeeh
Confidence 346799999999988888887 789999999999999998765 47888895 6889999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce----eeeeecCC------CCCCeE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ----MVNPIPSS------SDCSIS 1183 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~----~v~~l~~~------~~~~Vt 1183 (1348)
..++ ..+..|.+.+++ ++.+|++..+++||.|.+|++||..-... ..+.+.-+ -...|.
T Consensus 444 ----~~l~---Eti~AHdgaIWs----i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 444 ----ASLV---ETIRAHDGAIWS----ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred ----hhhh---hhhhccccceee----eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 2223 346789999998 88889999999999999999999752110 11111111 122389
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
|+ ..+|+|+++++|--|.+|+||-+.+-+-.+. .-||+-+|.|+.++|+ +..++|||.|..|++|-+.-+ .+
T Consensus 513 ~v-~~Spdgk~LaVsLLdnTVkVyflDtlKFfls----LYGHkLPV~smDIS~D--SklivTgSADKnVKiWGLdFG-DC 584 (888)
T KOG0306|consen 513 CV-SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS----LYGHKLPVLSMDISPD--SKLIVTGSADKNVKIWGLDFG-DC 584 (888)
T ss_pred EE-EEcCCCcEEEEEeccCeEEEEEecceeeeee----ecccccceeEEeccCC--cCeEEeccCCCceEEeccccc-hh
Confidence 99 7899999999999999999999998774443 3488899999999999 999999999999999999988 89
Q ss_pred eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1264 YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.+.+-+|.+.|.++.|-|....+.++|.|+.|+-|| ..-+.+..+.+ |. ..|+|++.+|+|.+++++|.|.
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-H~-------~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-HH-------SEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-ch-------heeeeeEEcCCCCeEEeccCCc
Confidence 999999999999999999999999999999999999 55677888887 44 7899999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
+|++|.
T Consensus 657 sIRlwE 662 (888)
T KOG0306|consen 657 SIRLWE 662 (888)
T ss_pred eeEeee
Confidence 999994
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=241.44 Aligned_cols=279 Identities=18% Similarity=0.337 Sum_probs=231.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.+.. +.|+++.| ..++..+++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~--d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL---GNITSIDF--DSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC---CCcceeee--cCCCceEEeecCCCceeeeec
Confidence 55789999999999999999999999999987655 666777776 88999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .++. .++.+|...|++ +.|......+++|+.|.+|+.||+.+.. |.+++-..+. +..|.+ .
T Consensus 249 d~----~r~~---~TLsGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S~--cnDI~~-~-- 311 (459)
T KOG0288|consen 249 DS----LRLR---HTLSGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGSQ--CNDIVC-S-- 311 (459)
T ss_pred cc----hhhh---hhhcccccceee----ehhhccccceeeccccchhhhhhhhhhh-eecccccccc--ccceEe-c--
Confidence 55 3333 568899999998 7777766678999999999999999988 8887665332 456632 2
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH- 1270 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h- 1270 (1348)
+..+++|..|+.||+||.|+.. ........ +.|+++..+++ +..+.+++.|.++++.|+++. +....+.+.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g----g~vtSl~ls~~--g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g 383 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSAD-KTRSVPLG----GRVTSLDLSMD--GLELLSSSRDDTLKVIDLRTK-EIRQTFSAEG 383 (459)
T ss_pred ceeeeecccccceEEEeccCCc-eeeEeecC----cceeeEeeccC--CeEEeeecCCCceeeeecccc-cEEEEeeccc
Confidence 5678999999999999999988 45544222 69999999998 999999999999999999987 666666643
Q ss_pred ---CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1271 ---RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1271 ---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
....+.+.|+|++.|+|+||.||.|+||++ +|+....+.. .. ....|++++|+|.|..|++++.++.+.+
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~-----s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-ST-----SNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CC-----CCcceEEEEEcCCCchhhcccCCcceEe
Confidence 234889999999999999999999999994 5666666665 22 1237999999999999999999999999
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
|-
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 93
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1.2e-22 Score=231.78 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=235.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC----Ce
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~ 1105 (1348)
.+|..+++...|+|.|-++|+|+..|+|||||+...+. ..+|+.-. ++|.++.| +.++..|++.++. |.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~W--d~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA---GPIKDISW--DFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc---ccccccee--CCCCcEEEEEecCccceeE
Confidence 34667899999999999999999999999999876432 34566666 89999999 7888888877653 56
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
+..||-.+.. ..+.+|...+.+ ++|-|... .++++++|+.|-+|+-.-.+ ...++..|+.. |.|
T Consensus 131 ~F~~DSG~Sv---------Gei~GhSr~ins----~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskF-V~~ 195 (603)
T KOG0318|consen 131 VFLWDSGNSV---------GEITGHSRRINS----VDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKF-VNC 195 (603)
T ss_pred EEEecCCCcc---------ceeeccceeEee----eeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccc-eee
Confidence 8888875422 236899999988 88888776 47778899999999977666 66777888876 999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
+ -++|+|..|++.+.||+|.+||=.+++ .+..+....+|++.|.+++|+|+ +..+++++.|.++||||+.+. +++
T Consensus 196 V-RysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~-slv 270 (603)
T KOG0318|consen 196 V-RYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVSTN-SLV 270 (603)
T ss_pred E-EECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEeecc-ceE
Confidence 9 788999999999999999999999998 66666667789999999999999 999999999999999999998 788
Q ss_pred EEEecCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1265 LTIDAHR---GSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1265 ~t~~~h~---~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+++.... +..-.+-|. +..|++.+.+|.|.+++ -++..+..+.+ |. ..|+++..++++.+|.+|+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G-Hn-------K~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG-HN-------KSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc-cc-------cceeEEEEcCCCCEEEeecc
Confidence 8887432 234455565 56888999999999999 45677788888 65 89999999999999999999
Q ss_pred CCeEEEcC
Q 000697 1341 DACVSIHS 1348 (1348)
Q Consensus 1341 Dg~I~IWd 1348 (1348)
||.|.-|+
T Consensus 341 DG~I~~W~ 348 (603)
T KOG0318|consen 341 DGHINSWD 348 (603)
T ss_pred CceEEEEe
Confidence 99999996
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.5e-23 Score=218.21 Aligned_cols=277 Identities=17% Similarity=0.257 Sum_probs=228.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
...+.+++|+.+|..|++|+.|+++.||+++.+..... ..+|. +.|-.++|. .+...++++++.|.+|++||+.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---~svdql~w~-~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---DSVDQLCWD-PKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---cchhhheeC-CCCCcceEEecCCceEEEEEec
Confidence 46799999999999999999999999999997755544 45566 789999995 4677899999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ++.... +...... ..+.|+|+++++++++.|..|...|.++.+ .+...+... .+..+++. .++
T Consensus 96 ~--~k~~~~-----i~~~~en-----i~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~~--e~ne~~w~-~~n 159 (313)
T KOG1407|consen 96 S--GKCTAR-----IETKGEN-----INITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFKF--EVNEISWN-NSN 159 (313)
T ss_pred c--CcEEEE-----eeccCcc-----eEEEEcCCCCEEEEecCcccEEEEEecccc-eeehhcccc--eeeeeeec-CCC
Confidence 7 433322 1111111 237999999999999999999999999887 665554322 36777444 778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
++|+.....|.|.|...-.-+ .+. ..+.|.....||.|+|+ |+++++|+.|..+.+||+... -+++.+.-+.-
T Consensus 160 d~Fflt~GlG~v~ILsypsLk-pv~---si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~EL-iC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLK-PVQ---SIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDEL-ICERCISRLDW 232 (313)
T ss_pred CEEEEecCCceEEEEeccccc-ccc---ccccCCcceEEEEECCC--CceEeeccccceeeccChhHh-hhheeeccccC
Confidence 888888889999999887666 444 34467799999999999 999999999999999999988 89999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC---------C
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD---------A 1342 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D---------g 1342 (1348)
+|+.+.|+.+|++||+||.|..|-|=+ -+|..+..++. .++...++|||...+||-+++| |
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCceeEEecCCCceeeEEecCCCCccccccc
Confidence 999999999999999999999999988 57999998875 2789999999999999988764 5
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
+|++|
T Consensus 304 ~vKiF 308 (313)
T KOG1407|consen 304 TVKIF 308 (313)
T ss_pred eeEEe
Confidence 67776
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.6e-24 Score=244.04 Aligned_cols=245 Identities=20% Similarity=0.328 Sum_probs=215.3
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1151 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll 1151 (1348)
++..+. .+|.++.| +|....++++-.+|.|.||+..+ +.++ +.+.-..-+|+. ..|-...+.++
T Consensus 8 k~~~rS---dRVKsVd~--HPtePw~la~LynG~V~IWnyet----qtmV---ksfeV~~~PvRa----~kfiaRknWiv 71 (794)
T KOG0276|consen 8 KFQSRS---DRVKSVDF--HPTEPWILAALYNGDVQIWNYET----QTMV---KSFEVSEVPVRA----AKFIARKNWIV 71 (794)
T ss_pred HhhccC---Cceeeeec--CCCCceEEEeeecCeeEEEeccc----ceee---eeeeecccchhh----heeeeccceEE
Confidence 344455 79999999 78999999999999999999854 5556 444445667777 56667788999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1152 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1152 ~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
+|++|..||||+.++.+ .+..+.+|.+. |.++ ..+|...++++++.|-.|++||....-.+.++ ++||...|.+
T Consensus 72 ~GsDD~~IrVfnynt~e-kV~~FeAH~Dy-IR~i-avHPt~P~vLtsSDDm~iKlW~we~~wa~~qt---feGH~HyVMq 145 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGE-KVKTFEAHSDY-IRSI-AVHPTLPYVLTSSDDMTIKLWDWENEWACEQT---FEGHEHYVMQ 145 (794)
T ss_pred EecCCceEEEEecccce-eeEEeeccccc-eeee-eecCCCCeEEecCCccEEEEeeccCceeeeeE---EcCcceEEEE
Confidence 99999999999999999 99999999887 9999 66788899999999999999999977655554 4578899999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEc-CCceEEEE
Q 000697 1232 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH--APIIASGSAKQLIKVFSL-EGEQLGTI 1308 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd--g~~LasgS~Dg~I~Vwd~-~g~~l~~i 1308 (1348)
++|+|. +.+.+++++-|++|++|.+... .+..++++|...|+|+++-+. .++|++|++|.+|+|||. +..++.++
T Consensus 146 v~fnPk-D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 146 VAFNPK-DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEecCC-CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999998 8999999999999999999988 899999999999999999875 469999999999999994 56788888
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+ |. ..|+.+.|||.-..+++||.||+|+||+
T Consensus 224 eG-Ht-------~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 224 EG-HT-------NNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hc-cc-------ccceEEEecCCCcEEEEecCCccEEEec
Confidence 88 66 7899999999999999999999999995
No 58
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=224.70 Aligned_cols=294 Identities=20% Similarity=0.340 Sum_probs=244.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec-
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD- 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl- 1111 (1348)
.|..+|..++-....+.+.+++.|.+-+||.+++|.++.++.+|. +.|.+++| ++.+.+++|++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikf--h~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT---GSVNSIKF--HNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc---cceeeEEe--ccccceEEEccCCcchHHHHHh
Confidence 456788888888888899999999999999999999999999999 99999999 678999999999999999983
Q ss_pred -----cCC---------------------------CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeE
Q 000697 1112 -----YDQ---------------------------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1112 -----~~~---------------------------~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~I 1159 (1348)
... .....+..+...+.+|...|.+ .+|-..+..+++++.|.+-
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a----~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA----CDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe----hhhhcCcceeeeeeccccc
Confidence 110 0011222334456677777766 7898889999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~ 1239 (1348)
.+||++++. .+..+.+|... .+.+ .-.|..+++++.+.|.+.++||.|..-..+. .++||...|+++.|..+
T Consensus 297 nlwDVEtge-~v~~LtGHd~E-LtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~---VFQGHtdtVTS~vF~~d-- 368 (481)
T KOG0300|consen 297 NLWDVETGE-VVNILTGHDSE-LTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA---VFQGHTDTVTSVVFNTD-- 368 (481)
T ss_pred eeeeeccCc-eeccccCcchh-cccc-ccCCcceEEEEeccCceeEeccchhhcceee---eecccccceeEEEEecC--
Confidence 999999999 99999988665 7776 5667889999999999999999995443344 55688899999999864
Q ss_pred CCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccc
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~ 1319 (1348)
..+++|+.|.+|++||+++.+.++.+++. ..+++.++++..+++||.--.+..|++||++|..+..+.. .. ..+|
T Consensus 369 -d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr-ts--RqgH 443 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR-TS--RQGH 443 (481)
T ss_pred -CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc-cc--cccc
Confidence 78999999999999999998889999984 5689999999999999999999999999999998887753 11 3356
Q ss_pred cCCeEEEEEeCCC--CEEEEEECCCeEEEcC
Q 000697 1320 IGSVNCLTFHPYQ--VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1320 ~~~Vtslafspdg--~~Latgs~Dg~I~IWd 1348 (1348)
..-|+|++|..+. .-|++++.|..+.-|+
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeE
Confidence 6789999997665 4578899999988874
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=213.75 Aligned_cols=249 Identities=18% Similarity=0.308 Sum_probs=206.5
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
.++.+++|. +++..++| +|. |..|++||.|+.||||+... .....+.+.. -.+|+..|++ ++|+|.+
T Consensus 6 ~~~~~~gh~---~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vl--d~~hkrsVRs----vAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHK---DRVWSVAW--HPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVL--DDGHKRSVRS----VAWSPHG 73 (312)
T ss_pred eEEeecCCC---CcEEEEEe--ccCCceEEEeecCCceEEEEecCC-CCcEEEEEec--cccchheeee----eeecCCC
Confidence 456778888 79999999 565 78999999999999999864 2233333211 2478899998 9999999
Q ss_pred CeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
.+|++++.|.++.||.-..+. +++..+.+|.+. |.|+ .++.+|++|++++.|.+|-||.+..... ......+++|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-VK~V-aws~sG~~LATCSRDKSVWiWe~deddE-fec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENE-VKCV-AWSASGNYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccc-eeEE-EEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEEeeecccc
Confidence 999999999999999766432 388889998776 9999 7889999999999999999999986653 33333667888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
..|..+.|+|. ..+|+++|.|.+|++|+-.... .++.++.+|.+.|.+++|++.|..|++++.|++|+||...
T Consensus 151 qDVK~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~--- 225 (312)
T KOG0645|consen 151 QDVKHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY--- 225 (312)
T ss_pred ccccEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec---
Confidence 99999999998 8999999999999999876322 7899999999999999999999999999999999999732
Q ss_pred EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..+ .+.|...+..++|. ...||+++.|+.|++|
T Consensus 226 -~~~-------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 226 -TDL-------SGMHSRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred -cCc-------chhcccceEeeeec--ccceEeccCCCEEEEE
Confidence 111 12345789999998 6689999999999987
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=2.6e-24 Score=244.14 Aligned_cols=251 Identities=20% Similarity=0.329 Sum_probs=211.5
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1146 (1348)
Q Consensus 1067 ~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~ 1146 (1348)
.+.+.++.+|. ..|+++.|.+ ..+.+|++|+.|+.|+||+++. . ..++ +++.+|..+|+. ++|+++
T Consensus 204 kk~~~~~~gH~---kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~-~--~~~l---rtf~gH~k~Vrd----~~~s~~ 269 (503)
T KOG0282|consen 204 KKLSHNLSGHT---KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYD-D--RRCL---RTFKGHRKPVRD----ASFNNC 269 (503)
T ss_pred HhheeeccCCc---cccchhhhcc-ceeeEEEecCCCceEEEEEEec-C--ccee---hhhhcchhhhhh----hhcccc
Confidence 36678899999 9999999952 4889999999999999999987 2 2333 789999999999 899999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
+..++++|.|+.|++||+++++ ++..+.. +..++|+. +.|++ +.|++|+.||.|+.||+|+++ +++.+ ..|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~-~~~~f~~--~~~~~cvk-f~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeY---d~h 341 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQ-VLSRFHL--DKVPTCVK-FHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEY---DRH 341 (503)
T ss_pred CCeeeeeecceeeeeeccccce-EEEEEec--CCCceeee-cCCCCCcEEEEecCCCcEEEEeccchH-HHHHH---Hhh
Confidence 9999999999999999999999 8888876 44578884 55555 999999999999999999998 66544 356
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC---
Q 000697 1226 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--- 1301 (1348)
Q Consensus 1226 ~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~--- 1301 (1348)
-+.|..+.|-++ |+.+++.+.|+.++||+.+.. .+++.+ ..+...+.++..||+++++++=+.|+.|.+|.+.
T Consensus 342 Lg~i~~i~F~~~--g~rFissSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 342 LGAILDITFVDE--GRRFISSSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhheeeeEEccC--CceEeeeccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 699999999999 999999999999999999987 444433 3344578899999999999999999999999843
Q ss_pred -CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 -g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
-.....+++ |. -.+.-..+.|||||.+|++|+.||.+.+||
T Consensus 419 r~nkkK~feG-h~-----vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 419 RLNKKKRFEG-HS-----VAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ccCHhhhhcc-ee-----ccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 233345666 54 235677899999999999999999999997
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.2e-24 Score=251.77 Aligned_cols=241 Identities=18% Similarity=0.310 Sum_probs=209.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+|.+++| +|....++++-..|.|++||..- ..++ ..+.+|.++|++ ++|+|+...+++||+|-.|+
T Consensus 10 sRvKglsF--HP~rPwILtslHsG~IQlWDYRM----~tli---~rFdeHdGpVRg----v~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 10 SRVKGLSF--HPKRPWILTSLHSGVIQLWDYRM----GTLI---DRFDEHDGPVRG----VDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ccccceec--CCCCCEEEEeecCceeeeehhhh----hhHH---hhhhccCCccce----eeecCCCCeEEecCCccEEE
Confidence 78999999 78999999999999999999854 2223 668899999999 99999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
||+..+.+ |+.++.+|-+. |..+ ++++.-.++++++.|.+|+||+..+++ ++.. .+||...|.|..|+|. .
T Consensus 77 VWnYk~rr-clftL~GHlDY-VRt~-~FHheyPWIlSASDDQTIrIWNwqsr~-~iav---ltGHnHYVMcAqFhpt--E 147 (1202)
T KOG0292|consen 77 VWNYKTRR-CLFTLLGHLDY-VRTV-FFHHEYPWILSASDDQTIRIWNWQSRK-CIAV---LTGHNHYVMCAQFHPT--E 147 (1202)
T ss_pred EEecccce-ehhhhccccce-eEEe-eccCCCceEEEccCCCeEEEEeccCCc-eEEE---EecCceEEEeeccCCc--c
Confidence 99999999 99999999887 9999 788888999999999999999999998 4543 4588899999999998 9
Q ss_pred CEEEEEECCCcEEEEEcCCCC----------------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1241 AKIVSASQAGDIQFLDIRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~----------------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
..++|+|-|.+|++||+...+ .....+.+|...|+-++|||.-+++++|++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 999999999999999986321 1234567899999999999999999999999
Q ss_pred CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1293 QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1293 g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.|++|..+....-.... ..+|.+.|+++-|||+..++++.|.|++|+|||
T Consensus 228 RqVKlWrmnetKaWEvDt-----crgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDT-----CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ceeeEEEeccccceeehh-----hhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 999999965443333222 123558999999999999999999999999997
No 62
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=231.27 Aligned_cols=245 Identities=19% Similarity=0.335 Sum_probs=212.9
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
|-..|...+.+++|+..|++|++++.|-.+.+||.++ -++++...+|. ..|.++.|. |.|.++++++.|.+|+.
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~---h~vS~V~f~--P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE---HGVSSVFFL--PLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc---cceeeEEEE--ecCCeeeecccccceeE
Confidence 3345667899999999999999999999999999986 46777788888 899999995 67899999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|++.+ +-. + +++.+|...|+. +..++||..+++++.|.+|++|-+.+.+ |...+..|.-. |-++++.
T Consensus 220 We~~t--g~c--v---~t~~~h~ewvr~----v~v~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~-vEci~wa 286 (406)
T KOG0295|consen 220 WECDT--GYC--V---KTFPGHSEWVRM----VRVNQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHP-VECIAWA 286 (406)
T ss_pred Eeccc--cee--E---EeccCchHhEEE----EEecCCeeEEEecCCCceEEEEEeccch-hhhhhhccccc-eEEEEec
Confidence 99976 322 2 568999998887 8888888888888999999999999998 88888877554 7887543
Q ss_pred cC--------------CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1189 QV--------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1189 s~--------------dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
+. .+.++.+|+.|++|++||+.++. ++. +..+|..+|..++|+|+ |++|+++..|+++++
T Consensus 287 p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~---tL~ghdnwVr~~af~p~--Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 287 PESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLF---TLVGHDNWVRGVAFSPG--GKYILSCADDKTLRV 360 (406)
T ss_pred ccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEE---EEecccceeeeeEEcCC--CeEEEEEecCCcEEE
Confidence 21 13599999999999999999997 443 33478899999999999 999999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
||+++. .+.+++..|..-+++++||.+..++++|+-|.++++|.
T Consensus 361 wdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 361 WDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999998 89999999999999999999999999999999999996
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=5.5e-23 Score=251.76 Aligned_cols=248 Identities=19% Similarity=0.420 Sum_probs=211.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~-~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|...|.+++|+|++.++++|+.|++|+|||. +.+..++++++|. ..|++++| +++++++++|+.|++|+|||
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~---~~v~~~~f--~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS---TYVTSVAF--SPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC---CceEEEEe--cCCCCEEEEecCCCcEEEEe
Confidence 346678999999999999999999999999999 5568999999999 89999999 78889999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee--eeeecCCCCC-CeEEEEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM--VNPIPSSSDC-SISALTA 1187 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~--v~~l~~~~~~-~VtsL~~ 1187 (1348)
+.+ ++.. +.+.+|...|.+ ++|++++..|++++.||.|++||+.++. . +..+..+... +++++ .
T Consensus 275 ~~~--~~~~-----~~l~~hs~~is~----~~f~~d~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~-~ 341 (456)
T KOG0266|consen 275 VRT--GECV-----RKLKGHSDGISG----LAFSPDGNLLVSASYDGTIRVWDLETGS-KLCLKLLSGAENSAPVTSV-Q 341 (456)
T ss_pred ccC--CeEE-----EeeeccCCceEE----EEECCCCCEEEEcCCCccEEEEECCCCc-eeeeecccCCCCCCceeEE-E
Confidence 976 3333 568999999998 8999999999999999999999999988 4 3566655554 68888 7
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1267 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~ 1267 (1348)
+++++.++++++.|+.+++||++... ....+..+..-...+.+...++. +.++++|+.|+.|.+||+.++ ..+..+
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~i~sg~~d~~v~~~~~~s~-~~~~~l 417 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTG--GKLIYSGSEDGSVYVWDSSSG-GILQRL 417 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCC--CCeEEEEeCCceEEEEeCCcc-chhhhh
Confidence 88999999999999999999999887 44444333211113444455666 999999999999999999986 788899
Q ss_pred ecC-CCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcC
Q 000697 1268 DAH-RGSLSALAVHRHAPIIASGS--AKQLIKVFSLE 1301 (1348)
Q Consensus 1268 ~~h-~~~VtsLa~spdg~~LasgS--~Dg~I~Vwd~~ 1301 (1348)
.+| ...+..+.+|+...++++++ .|+.+++|..+
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999754
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=8.9e-23 Score=251.33 Aligned_cols=297 Identities=18% Similarity=0.257 Sum_probs=240.1
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCC------------CcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEE------------DTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs--~dg~I~VWd~~t------------~~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|...++..|.++..||||..++||+ .||.++||+.+. .+.+.+...|. +.|+|+.| ++|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---~sv~CVR~--S~d 80 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---GSVNCVRF--SPD 80 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---CceeEEEE--CCC
Confidence 348888888899999999999999999 899999998652 13455667787 89999999 899
Q ss_pred CCEEEEEeCCCeEEEEeccC--------CCCceeEEe---eeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE
Q 000697 1094 VSLLLVASCNGNIRIWKDYD--------QKDKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~--------~~~~~~lvs---~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW 1162 (1348)
|.+|++||+|+.|.||+... ..+....++ +...+.+|...|.. ++|+|++.++++++.|++|.||
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D----v~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD----VNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce----eccCCCccEEEEecccceEEEE
Confidence 99999999999999999862 112222222 33567899999998 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC---CCCCCeEEEEEecCCC
Q 000697 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---QQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1163 Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~---~h~~~I~sl~~sp~~~ 1239 (1348)
|..+.+ ++..+.+|..- |..+ .++|-|++|++-+.|++|++|+...-. +.+.+...- .-...+..+.|+|+
T Consensus 157 n~~tF~-~~~vl~~H~s~-VKGv-s~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD-- 230 (942)
T KOG0973|consen 157 NAKTFE-LLKVLRGHQSL-VKGV-SWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD-- 230 (942)
T ss_pred ccccce-eeeeeeccccc-ccce-EECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC--
Confidence 999998 99999999886 9999 778999999999999999999977644 333332221 22356889999999
Q ss_pred CCEEEEEEC----CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----CC------------EEEEEeCCCcEEEE
Q 000697 1240 PAKIVSASQ----AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----AP------------IIASGSAKQLIKVF 1298 (1348)
Q Consensus 1240 g~~LaSgs~----DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----g~------------~LasgS~Dg~I~Vw 1298 (1348)
|.+|++... -..+.|.+-.+. +.-..+-+|.+++.++.|+|. .. ++|+||.|++|.||
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 999998753 235888887766 677889999999999999982 11 78999999999999
Q ss_pred Ec-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1299 SL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1299 d~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .-+++..+.. -| ...|.+++|+|||..|.++|.||+|.+.
T Consensus 310 ~T~~~RPl~vi~~---lf----~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 310 NTALPRPLFVIHN---LF----NKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ecCCCCchhhhhh---hh----cCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 94 3444444322 11 3689999999999999999999999874
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.9e-22 Score=223.42 Aligned_cols=240 Identities=21% Similarity=0.398 Sum_probs=204.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
+...+..+.|++++++|++++.+|.|++||+.+++.+..+..|. ..|.++.| .+++.++++++.||.|++||+..
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAF--SPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC---CcEEEEEE--cCCCCEEEEecCCCeEEEEECCC
Confidence 34667899999999999999999999999999888888888888 78999999 56788888888899999999964
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
++ .. ..+..|...+.+ ++|++++..+++++.+|.|++||+++.+ .+..+..+... |.++ .+.++++
T Consensus 125 --~~--~~---~~~~~~~~~i~~----~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~ 190 (289)
T cd00200 125 --GK--CL---TTLRGHTDWVNS----VAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGE-VNSV-AFSPDGE 190 (289)
T ss_pred --cE--EE---EEeccCCCcEEE----EEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccc-cceE-EECCCcC
Confidence 22 22 234567777777 8999987777777779999999999888 77788766554 9999 6778888
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.+++++.||.|++||++..+ ....+ ..|...+.++.|+++ +.++++++.||.|++||+.++ .....+..|...
T Consensus 191 ~l~~~~~~~~i~i~d~~~~~-~~~~~---~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~ 263 (289)
T cd00200 191 KLLSSSSDGTIKLWDLSTGK-CLGTL---RGHENGVNSVAFSPD--GYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNS 263 (289)
T ss_pred EEEEecCCCcEEEEECCCCc-eecch---hhcCCceEEEEEcCC--CcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCc
Confidence 99999999999999999866 34333 355679999999998 899999998999999999987 788888899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+.+++|++++.++++++.||.|++|+
T Consensus 264 i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 264 VTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999996
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=250.35 Aligned_cols=291 Identities=13% Similarity=0.220 Sum_probs=208.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC-------CCCCeEEEEEEe-eC--CCCEEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-------PDKGISKLCLVN-EL--DVSLLLVAS 1101 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~-------~~~~ItsL~f~n-s~--d~~~L~tgs 1101 (1348)
..|.+.|.++.|++||+|||+|+.||.|+||.+...+....-.+... ..+.+..+.-.. .. .....-.+.
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 37889999999999999999999999999999875333111000000 000011111100 00 011111222
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
....+ +..... -.-...++..+.||.+.|.. +.|+ .+++|++++.|++||+|++.+.+ |+..|. |.+.
T Consensus 344 ~s~~~-~~p~~~---f~f~ekP~~ef~GHt~DILD----lSWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL~~F~-Hndf- 411 (712)
T KOG0283|consen 344 QSPCV-LLPLKA---FVFSEKPFCEFKGHTADILD----LSWS-KNNFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDF- 411 (712)
T ss_pred CCccc-cCCCcc---ccccccchhhhhccchhhee----cccc-cCCeeEeccccccEEeecCCCcc-eeeEEe-cCCe-
Confidence 22221 112111 01112345678999999988 8998 46899999999999999999999 998886 5565
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
|||+++.+.|.++|++|+-||.||||++...+ + ..+.... .-|++++|.|+ |+..+.|+.+|.+++|++...
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-V-v~W~Dl~---~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~l- 483 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-V-VDWNDLR---DLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGL- 483 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCe-e-Eeehhhh---hhheeEEeccC--CceEEEEEeccEEEEEEccCC-
Confidence 99999999999999999999999999998776 3 3333332 78999999999 999999999999999999976
Q ss_pred cceEEEecC--------CCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1262 DAYLTIDAH--------RGSLSALAVHRHAP-IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1262 ~~v~t~~~h--------~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+....+..+ ...|+++.|.|... .+++.+.|..|+|||. +.+.+..+++ +. ..+.-....|+.|
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-~~-----n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-FR-----NTSSQISASFSSD 557 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-cc-----cCCcceeeeEccC
Confidence 454444321 22799999998654 4666789999999995 4566777777 33 1244466789999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000697 1332 QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 g~~Latgs~Dg~I~IWd 1348 (1348)
|++|++++.|..|+||+
T Consensus 558 gk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWK 574 (712)
T ss_pred CCEEEEeecCceEEEEe
Confidence 99999999999999996
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=226.27 Aligned_cols=280 Identities=17% Similarity=0.299 Sum_probs=237.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
.+|+++...+..+.+++|+.|.++.++|..+++.+..+++|. ..|+++.| +++...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc---eEEEEEEe--ccchhheeecCCcceEEeecccccc
Confidence 578899998888899999999999999999999999999999 89999999 7899999999999999999986632
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCCCE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg~~ 1194 (1348)
. . .....|..+|+. +..++.+.+++++++||...+.|++++. ++..... ..+..+++. .++|||.+
T Consensus 295 ~--~-----~~~~~h~~~V~~----ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~-~fHpDgLi 361 (506)
T KOG0289|consen 295 E--P-----TSSRPHEEPVTG----LSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSA-AFHPDGLI 361 (506)
T ss_pred C--c-----ccccccccccee----eeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEe-eEcCCceE
Confidence 1 1 235678899988 7888999999999999999999999998 6655554 244457888 78899999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCC
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGS 1273 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~ 1273 (1348)
|.+|..||.|++||+.++. .+. .+.+|.++|..++|+.+ |.+|++++.|+.|++||+|.. +.+.++... ...
T Consensus 362 fgtgt~d~~vkiwdlks~~-~~a---~Fpght~~vk~i~FsEN--GY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQT-NVA---KFPGHTGPVKAISFSEN--GYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKE 434 (506)
T ss_pred EeccCCCceEEEEEcCCcc-ccc---cCCCCCCceeEEEeccC--ceEEEEEecCCeEEEEEehhh-cccceeecccccc
Confidence 9999999999999999887 343 45578899999999998 999999999999999999987 566666643 337
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCC---ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g---~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.++.|...|.+|+.++.|=.|++++... ..+..+.. |.+..+++.|..+.++++++|.|..+++|.
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~--------~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD--------HSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh--------cccccceeeecccceEEeeccchhheEEee
Confidence 99999999999999998886777776333 33333433 447889999999999999999999999873
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=7.7e-23 Score=226.05 Aligned_cols=261 Identities=20% Similarity=0.380 Sum_probs=214.2
Q ss_pred ccCCcccccccC---------CCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCcE----EEEeeCCCCCCCCeEE
Q 000697 1022 KLNNPIACWDTR---------FEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDTL----LNSFDNHDFPDKGISK 1085 (1348)
Q Consensus 1022 kl~~~i~~Wd~~---------~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~~~----l~~~~~h~~~~~~Its 1085 (1348)
...+...+|+.+ |.++|.+++|.-... .+++|+.|.++++|.++.++. +..-++|. ..|.+
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk---~~V~s 198 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK---RSVDS 198 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc---cceeE
Confidence 344556777766 457888888754333 699999999999999987643 33345898 89999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEeccCCC------------------CceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1086 LCLVNELDVSLLLVASCNGNIRIWKDYDQK------------------DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1086 L~f~ns~d~~~L~tgs~DG~IrIWdl~~~~------------------~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
+.. ..++..+++|+.|.+|+||+..... +.....++...+.+|..+|.+ +.|++ .
T Consensus 199 Vsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~----V~w~d-~ 271 (423)
T KOG0313|consen 199 VSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS----VVWSD-A 271 (423)
T ss_pred EEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee----EEEcC-C
Confidence 998 6899999999999999999932210 001111234567899999988 88986 8
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
..+++++.|.+|++||+.++. ++.++.+.. .++|+ ...+..++|++|+.|..+++||.|++...+... .+.+|++
T Consensus 272 ~v~yS~SwDHTIk~WDletg~-~~~~~~~~k--sl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-s~~gH~n 346 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGG-LKSTLTTNK--SLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-SLIGHKN 346 (423)
T ss_pred CceEeecccceEEEEEeeccc-ceeeeecCc--ceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEE-eeecchh
Confidence 899999999999999999999 888887743 38898 566789999999999999999999876444333 6679999
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+|.++.|+|. +...|++|+.||++++||+|....++..+.+|.+.|.++.|. .+..+++|+.|++|+|+.
T Consensus 347 wVssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 347 WVSSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred hhhheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 9999999998 788999999999999999999866999999999999999998 567999999999999986
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=5.8e-23 Score=233.45 Aligned_cols=295 Identities=16% Similarity=0.260 Sum_probs=223.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCC-CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~-~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
+...|.++++.|.|..|++|+.|.+|+.||+..- .....|+.-.+ ....|.++.| ++.++.|++.+.....+|+|-
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCeEEEEecCcceeEEcc
Confidence 3456899999999999999999999999999742 22222332221 1246999999 789999999998899999986
Q ss_pred cCCCCceeE------EeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecC----CCCC
Q 000697 1112 YDQKDKQKL------VTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS----SSDC 1180 (1348)
Q Consensus 1112 ~~~~~~~~l------vs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----~~~~ 1180 (1348)
... ...+. +.....-.||...+++ .+|+|... .+++++.||++|+||+...+.....++. ...-
T Consensus 244 dG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~----g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 244 DGF-EIVEFSKGDQYIRDMYNTKGHIAELTC----GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred CCc-eeeeeeccchhhhhhhccCCceeeeec----cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 321 11111 1112334678888887 89999865 5777789999999999876523444432 2233
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
+++++ .|+++|..|++|+.||+|.+||.+... ....+.....|.. .|+||.|+++ |++|++-+.|+++++||+|
T Consensus 319 ~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~d--g~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYD--GNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred Cceee-ecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccc--cchhhhccCCCceeeeecc
Confidence 46666 788999999999999999999987543 1111212234555 8999999999 9999999999999999999
Q ss_pred CCCcceEEEecCC--CCeEEEEEeCCCCEEEEEeC------CCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1259 NHKDAYLTIDAHR--GSLSALAVHRHAPIIASGSA------KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~--~~VtsLa~spdg~~LasgS~------Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
..++++.+..+-. -.-+.++|+|+.++|++|+. .|.+.+|| .+-+.+..+.. .. ..|..+.||
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~-------aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-ST-------ASVVRCLWH 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CC-------ceEEEEeec
Confidence 9888888777543 35678999999999999864 46799999 66677777766 33 789999999
Q ss_pred CCCCEEEEEECCCeEEEc
Q 000697 1330 PYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IW 1347 (1348)
|.-+.+.+|+.||.++||
T Consensus 467 pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred chhhheeeecCCCceEEE
Confidence 999999999999999986
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.6e-22 Score=214.00 Aligned_cols=270 Identities=18% Similarity=0.335 Sum_probs=216.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
-...|++|.|+|.+..|++++.||++++||.........++. . .++.+++| .+...+++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~---~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-G---APLLDCAF---ADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-C---Cceeeeec---cCCceEEEeccCceEEEEEecC
Confidence 347899999999999999999999999999997766555553 3 58999999 3578899999999999999977
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+.... +..|...+++ +.+.+..+.+++||.|++|++||.+... ++..+.... .|.++ +..++
T Consensus 85 --~~~~~------igth~~~i~c----i~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~~k--kVy~~---~v~g~ 146 (323)
T KOG1036|consen 85 --GNEDQ------IGTHDEGIRC----IEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQGK--KVYCM---DVSGN 146 (323)
T ss_pred --Cccee------eccCCCceEE----EEeeccCCeEEEcccCccEEEEeccccc-cccccccCc--eEEEE---eccCC
Confidence 33222 4678899988 8888889999999999999999999766 565555433 48887 34688
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cceEEEecC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAH 1270 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~v~t~~~h 1270 (1348)
.|+.|+.|..|.+||+|+.....+.. ...-+-.++++++-|. +.-++++|.||.|.+=.+.... .....|+.|
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r--eS~lkyqtR~v~~~pn--~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR--ESSLKYQTRCVALVPN--GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc--cccceeEEEEEEEecC--CCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999999999999876443221 1122467899999998 7788899999998776655431 344567777
Q ss_pred CC---------CeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1271 RG---------SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1271 ~~---------~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.. +|++++|||-...||||+.||.|.+|| ...+.+..+.. .+ ..|.+++|+.+|..||++++
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~-------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-YE-------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-CC-------CceEEEEeccCCCeEEEEec
Confidence 42 799999999989999999999999999 45666766655 33 67999999999999999975
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=244.24 Aligned_cols=271 Identities=21% Similarity=0.363 Sum_probs=227.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~-~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+.+..|+ +.++++++.+.+|++||..++..+.. +.+|. +.|.++++ ...+.+|++|+.|.+++|||..+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC---CCceeEEE--ecCCCEEEEEecCCcEEeEecCC
Confidence 4567888888 67899999999999999999998888 99999 99999999 34689999999999999999765
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+... ..+.+|...+.+ +.. ....++.|+.|.+|++||+.++. ++..+.+|.+. |.++. . ++.
T Consensus 281 --g~C~-----~~l~gh~stv~~----~~~--~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~-V~~v~-~--~~~ 342 (537)
T KOG0274|consen 281 --GECT-----HSLQGHTSSVRC----LTI--DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGP-VNCVQ-L--DEP 342 (537)
T ss_pred --CcEE-----EEecCCCceEEE----EEc--cCceEeeccCCceEEEEeccCcc-eEEEecccccc-EEEEE-e--cCC
Confidence 5554 447899988876 332 35567777899999999999999 99999986554 99993 3 489
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++++|+.||+|++||.++.+ +++ .+.+|..+|.++.+.. ...+++|+.|++|++||+++..+++.++.+|...
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~-cl~---sl~gH~~~V~sl~~~~---~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGK-CLK---SLSGHTGRVYSLIVDS---ENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred EEEEEecCceEEEEEhhhce-eee---eecCCcceEEEEEecC---cceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 99999999999999999877 555 4457889999997753 1799999999999999999865699999999988
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+.+ .+.+|++++.|++|++|| .+++.+..+.. + +.+.|+.+++. ...+++++.||.+++||
T Consensus 416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-~------~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-R------HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccccc--ccceeEeccccccEEEeecccCceeeeecc-C------CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 866655 568999999999999999 67888888877 2 33678888776 46788888999999996
No 72
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=3.9e-21 Score=235.19 Aligned_cols=271 Identities=19% Similarity=0.243 Sum_probs=198.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-------------EEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------NSFDNHDFPDKGISKLCLVNEL-DVSLLLVASC 1102 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-------------~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~ 1102 (1348)
.|.....++++..+++++.+.....|+...+..+ ..+.+|. +.|++++| ++ ++.+|++|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~---~~V~~v~f--sP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE---GPIIDVAF--NPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC---CCEEEEEE--cCCCCCEEEEEeC
Confidence 3455556667666666666666666765433222 1366777 89999999 56 7889999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
||+|++||+...............+.+|...|.+ ++|+|++ ..|++++.|+.|+|||+++++ .+..+..|.+.
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~----l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~- 170 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI----VSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQ- 170 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEE----EEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCc-
Confidence 9999999996521111111223457889988887 9999986 578888999999999999998 88888888765
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC-eEEEEEecCCCCCEEEEEE----CCCcEEEEE
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER-VVGISFQPGLDPAKIVSAS----QAGDIQFLD 1256 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~-I~sl~~sp~~~g~~LaSgs----~DG~I~IWD 1256 (1348)
|.++ .+++++++|++|+.||.|++||+++++ .+..+. +|.+. +..+.|.++ +..+++++ .|+.|++||
T Consensus 171 V~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~---~H~~~~~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 171 ITSL-EWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVE---AHASAKSQRCLWAKR--KDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred eEEE-EEECCCCEEEEecCCCEEEEEECCCCc-EEEEEe---cCCCCcceEEEEcCC--CCeEEEEecCCCCCCeEEEEe
Confidence 9999 667899999999999999999999987 444443 34443 456778887 56666543 478999999
Q ss_pred cCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1257 IRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGS-AKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
+++...++.....+. ..+....|++++.+|++|+ .|+.|++||+. ++.+..... . ...++.+++|.|..
T Consensus 244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~------s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-S------SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-c------CCCCCcceEecccc
Confidence 998756666555443 4566677899999988887 59999999954 555544443 1 23466777777754
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.7e-23 Score=216.59 Aligned_cols=244 Identities=20% Similarity=0.293 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFS-PIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
..+...++|++.. +.+++++.||++++||... .+.+..|+.|. ..|.++.|. ..++..++++|.||+|++|+..
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~---~EV~Svdwn-~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK---REVYSVDWN-TVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh---hheEEeccc-cccceeEEeeccCCceEeecCC
Confidence 3689999999865 4888899999999999653 46788899999 899999993 5677889999999999999985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
. +.-+ +++.+|...|.. ..|+|....+++ ++.||.+++||++... ....+..|.. .|.|+.+..-+
T Consensus 136 r----~~Sv---~Tf~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~-Eil~cdw~ky~ 202 (311)
T KOG0277|consen 136 R----PNSV---QTFNGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNS-EILCCDWSKYN 202 (311)
T ss_pred C----Ccce---EeecCCccEEEE----EecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccc-eeEeecccccC
Confidence 5 2222 558899988888 899988665555 5899999999998765 4555888874 49999787788
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
.+++++|+.|+.||.||+|+-+..+.. ..+|.-.|+.+.|+|. ....|++++.|-+++|||...+...+.+...|.
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~e---L~gh~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFE---LNGHGLAVRKVKFSPH-HASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CcEEEecCCCceEEEEehhhcccccee---ecCCceEEEEEecCcc-hhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 899999999999999999987755443 3578899999999998 788999999999999999987767888888899
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1272 GSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1272 ~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.-+..++|++. ..++|+++.|+.++||+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 99999999986 45999999999999998
No 74
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=6e-21 Score=234.55 Aligned_cols=256 Identities=17% Similarity=0.246 Sum_probs=192.3
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeEEEEeccCCCCce-eEEeeeecccCC
Q 000697 1053 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQGH 1130 (1348)
Q Consensus 1053 gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~-~lvs~~~~l~~h 1130 (1348)
|+.++.|++|+......+..+.+|. +.|.+++| +++ +.+|++|+.||+|+|||+....... ........+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~---~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT---SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC---CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5568899999988888888999999 89999999 565 7899999999999999996521111 111122346788
Q ss_pred CCcccccceEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 000697 1131 KPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1348)
Q Consensus 1131 ~~~V~si~~~v~ws~~~~~L-l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDl 1209 (1348)
...|.+ ++|+|++..+ ++++.||+|++||+++++ .+..+. +. ..|.++ .++++|.+|++++.|+.|++||+
T Consensus 125 ~~~V~s----Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~-~~V~Sl-swspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISI----IDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MP-KKLSSL-KWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEE----EEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cC-CcEEEE-EECCCCCEEEEEecCCEEEEEEC
Confidence 888887 9999998776 567899999999999988 776665 33 349999 67889999999999999999999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEE-----EEecCCCCCEEEEEECCC----cEEEEEcCCCCcceEEEec--CCCCeEEEE
Q 000697 1210 RTPDMLVCSTRPHTQQVERVVGI-----SFQPGLDPAKIVSASQAG----DIQFLDIRNHKDAYLTIDA--HRGSLSALA 1278 (1348)
Q Consensus 1210 r~~~~~v~~~~~~~~h~~~I~sl-----~~sp~~~g~~LaSgs~DG----~I~IWDlr~~~~~v~t~~~--h~~~VtsLa 1278 (1348)
++++ .+..+. +|.+.+.+. .|+++ +.+|++++.|+ .|+|||++....++..+.. +.+.+....
T Consensus 197 Rsg~-~i~tl~---gH~g~~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 197 RKQE-IASSFH---IHDGGKNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred CCCc-EEEEEe---cccCCceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 9987 444443 455544332 34466 78888887764 7999999975567766543 334444444
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1279 VHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1279 ~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
..++|.++++|+.|+.|++|++....+..+.. +. +..++.+++|.|...
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-----s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-----SCSPFRSFGFLPKQI 319 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-----cCCCccceEEccccc
Confidence 45668899999999999999976555554443 22 347788899999763
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-21 Score=231.25 Aligned_cols=273 Identities=17% Similarity=0.267 Sum_probs=222.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
..-+.|+ ..+.|++|. ...|.+|+..+++.......+. ..|+++.| +++|.+|++|..+|.|.|||....+.
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~---~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~- 251 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGE---ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKK- 251 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCC---CceEEEEE--CCCCCEEEEeecCCeEEEEehhhccc-
Confidence 4456677 455777776 5689999999998776666655 79999999 78999999999999999999865222
Q ss_pred eeEEeeeecccC-CCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeEEEEEecCCCCEE
Q 000697 1118 QKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1118 ~~lvs~~~~l~~-h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
+ +.+.+ |...|-+ ++|+ +..+.+|+.||.|..+|++..+ .... +.+|... |..+ .+.++++++
T Consensus 252 ---~---~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~-~~~~~~~~H~qe-VCgL-kws~d~~~l 316 (484)
T KOG0305|consen 252 ---T---RTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQ-HVVSTLQGHRQE-VCGL-KWSPDGNQL 316 (484)
T ss_pred ---c---ccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecch-hhhhhhhcccce-eeee-EECCCCCee
Confidence 2 34556 7777776 8997 6778888899999999999887 4444 6666555 9999 678999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++|+.|+.+.|||........+ ..+|...|..++|+|. ....||+|+ .|+.|++||..++ ..+..+.. ...
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~----~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt-gsQ 389 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFT----FTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT-GSQ 389 (484)
T ss_pred ccCCCccceEeccCCCccccEE----EeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCC-cEeccccc-CCc
Confidence 9999999999999976664443 2367799999999998 788899875 6899999999987 67776663 567
Q ss_pred eEEEEEeCCCCEEEEE--eCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASG--SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~Lasg--S~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|.+|.|++..+-|+++ ..+..|.||+. +-+.+..+.+ |. ..|..++++|||..+++|+.|.++++|+
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~-------~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HT-------SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-Cc-------ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 9999999998766554 55678999994 5566677777 65 8899999999999999999999999996
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=3.6e-21 Score=212.23 Aligned_cols=241 Identities=16% Similarity=0.285 Sum_probs=197.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|+..|+++.|+.+|.+||||+-+|.|+||+..++.....+...- ..|.-+.| +|.+..|+.|+.||.|-+|.+..
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~---~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV---EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc---CceEEEEe--cccccEEEeecCCCcEEEEECCC
Confidence 45789999999999999999999999999999998888776333 56778888 78999999999999999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC----------------
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---------------- 1177 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~---------------- 1177 (1348)
+ ... +.+.+|..++++ =.|.|+|+.++++..||+|++||..+++ ++..+...
T Consensus 180 --~--~~~---kv~~Gh~~~ct~----G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 180 --Q--ALC---KVMSGHNSPCTC----GEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGST 247 (399)
T ss_pred --c--cee---eEecCCCCCccc----ccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccce
Confidence 2 122 457899999888 6788999999999999999999999988 66655410
Q ss_pred -----CCC----------CeEEE-------------------E--EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC
Q 000697 1178 -----SDC----------SISAL-------------------T--ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1348)
Q Consensus 1178 -----~~~----------~VtsL-------------------~--~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~ 1221 (1348)
.+. .|..+ . .++..-.+.++|+.||+|.|||+...+ .....
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c-- 324 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHIC-- 324 (399)
T ss_pred eEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheec--
Confidence 000 01111 0 011112467889999999999998776 33332
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1222 ~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|...|+.+.|-+. .+|++++.||.|+.||.|++ .++.++.+|...|.+++++|++++++++|.|++.+||+.
T Consensus 325 --~he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 325 --EHEDGVTKLKWLNT---DYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred --cCCCceEEEEEcCc---chheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 46688999999863 78999999999999999998 899999999999999999999999999999999999975
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3.6e-21 Score=207.66 Aligned_cols=270 Identities=14% Similarity=0.288 Sum_probs=211.3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1034 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1034 ~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t-~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
-...|.+|+||| ...++++|+.||+||+|+++. |..+ +....|. ++|.+++| +.||..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~W--sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCW--SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEE--ccCCceEEeeccCCceEEEE
Confidence 347899999999 555777999999999999986 3333 2344566 89999999 78999999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
+.. ++.. .+..|..+|+. +.|-+... .|++|+.|++|+.||.+... ++.++.... .+.++.
T Consensus 101 L~S--~Q~~------~v~~Hd~pvkt----~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPe--RvYa~D-- 163 (347)
T KOG0647|consen 101 LAS--GQVS------QVAAHDAPVKT----CHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPE--RVYAAD-- 163 (347)
T ss_pred ccC--CCee------eeeecccceeE----EEEecCCCcceeEecccccceeecccCCCC-eeeeeeccc--eeeehh--
Confidence 977 4332 35779999998 78866555 68999999999999999988 888776532 267662
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTI 1267 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~ 1267 (1348)
....+++.+..+..|.+|+++.+....+..+.. -+-.++||+..++ ....+.|+.+|.+.|..+..+. +.-.+|
T Consensus 164 -v~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d--~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 164 -VLYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQD--KDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred -ccCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEec--CCceEeeeecceEEEEecCCCCccCceeE
Confidence 345689999999999999998776444433221 2356889999988 6677999999999999988641 334466
Q ss_pred ecCCC---------CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEE
Q 000697 1268 DAHRG---------SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1268 ~~h~~---------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Lat 1337 (1348)
+.|+. .|++++|||.-..|++.+.||++.+||.+ ...+.+.+. |. .+|++.+|+.+|.++|-
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~~-------qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-HP-------QPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-CC-------CccceeEecCCCCEEEE
Confidence 77752 57889999998899999999999999954 344444444 43 89999999999998875
Q ss_pred E
Q 000697 1338 G 1338 (1348)
Q Consensus 1338 g 1338 (1348)
+
T Consensus 311 A 311 (347)
T KOG0647|consen 311 A 311 (347)
T ss_pred E
Confidence 5
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.3e-21 Score=210.62 Aligned_cols=286 Identities=14% Similarity=0.236 Sum_probs=224.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------------C------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------D------TLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t------------~------~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|..++.+.+|++||.++|+|+.|..|+|.|++. | -.++++-.|. ..|+++.| +|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~---devn~l~F--HPr 183 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV---DEVNDLDF--HPR 183 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc---Ccccceee--cch
Confidence 55778999999999999999999999999999871 1 2466777788 89999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
...|++|+.|++|+++|... .....+++.++ ....|++ +.|+|.|.++++|.+-.++++||+++.+ |...
T Consensus 184 e~ILiS~srD~tvKlFDfsK----~saKrA~K~~q-d~~~vrs----iSfHPsGefllvgTdHp~~rlYdv~T~Q-cfvs 253 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSK----TSAKRAFKVFQ-DTEPVRS----ISFHPSGEFLLVGTDHPTLRLYDVNTYQ-CFVS 253 (430)
T ss_pred hheEEeccCCCeEEEEeccc----HHHHHHHHHhh-ccceeee----EeecCCCceEEEecCCCceeEEecccee-Eeee
Confidence 99999999999999999854 22222333343 2345666 8999999999999999999999999988 6544
Q ss_pred ec---CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1174 IP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1174 l~---~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
-. .|.+ .|+++ -+++.+++.++|+.||.|++||--+++ ++.++. .|. ...|.+..|..+ |+++++.+.|
T Consensus 254 anPd~qht~-ai~~V-~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~--gsevcSa~Ftkn--~kyiLsSG~D 326 (430)
T KOG0640|consen 254 ANPDDQHTG-AITQV-RYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHG--GSEVCSAVFTKN--GKYILSSGKD 326 (430)
T ss_pred cCccccccc-ceeEE-EecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcC--CceeeeEEEccC--CeEEeecCCc
Confidence 32 3444 49999 678899999999999999999998887 454442 232 467999999998 9999999999
Q ss_pred CcEEEEEcCCCCcceEEEecCC-----CCeEEEEEeCCCCEEEEEe-CCCcEEEEEc-CCceEEEEeccCCcccccccCC
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGS-AKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGS 1322 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h~-----~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~ 1322 (1348)
..|++|.+.++ .++..+.+-. ..-+...|+....+++.-. ..+.+.-||. ++..+..+.. +|.+.
T Consensus 327 S~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-------gHn~a 398 (430)
T KOG0640|consen 327 STVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-------GHNGA 398 (430)
T ss_pred ceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-------CCCCC
Confidence 99999999998 7888777531 1223445665566665543 3466888994 4444433332 35589
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1323 VNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1323 Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
+..+.-+|.+..++||+.|..+++|
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeee
Confidence 9999999999999999999999999
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-21 Score=229.11 Aligned_cols=241 Identities=17% Similarity=0.294 Sum_probs=210.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~-h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|+++.|+++|.+|++|..+|.|.|||.++.+.+..+.+ |. ..|.+++| ++..+.+|+.||.|..+|+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~---~rvg~laW----~~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA---SRVGSLAW----NSSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC---ceeEEEec----cCceEEEecCCCcEEEEEEec
Confidence 46899999999999999999999999999999999999998 77 89999999 478999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.+. .+ ..+.+|...|.. +.|++++.++++||.|+.+.|||..... +...+..|... |.+++|++....
T Consensus 290 ~~~---~~---~~~~~H~qeVCg----Lkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aA-VKA~awcP~q~~ 357 (484)
T KOG0305|consen 290 SQH---VV---STLQGHRQEVCG----LKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAA-VKALAWCPWQSG 357 (484)
T ss_pred chh---hh---hhhhcccceeee----eEECCCCCeeccCCCccceEeccCCCcc-ccEEEecccee-eeEeeeCCCccC
Confidence 222 11 237889999988 9999999999999999999999998777 88888888776 999988888889
Q ss_pred EEEEEe--CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCcceEEEec
Q 000697 1194 QLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1194 ~LvsGs--~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
+|++|+ .|+.|++||..++.. +....+ .+.|.++.|++. .+.|+++. .++.|.||+..+. +.+..+.+
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~-i~~vdt----gsQVcsL~Wsk~--~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g 429 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGAR-IDSVDT----GSQVCSLIWSKK--YKELLSTHGYSENQITLWKYPSM-KLVAELLG 429 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcE-eccccc----CCceeeEEEcCC--CCEEEEecCCCCCcEEEEecccc-ceeeeecC
Confidence 999875 599999999999884 443322 378999999999 77777654 5678999999987 79999999
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1270 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1270 h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|...|..++++|+|..+++|+.|.++++|++-+
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999999999999999999999999999999544
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.4e-22 Score=218.63 Aligned_cols=246 Identities=15% Similarity=0.221 Sum_probs=200.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|..+|.-+.||||+++|++++.+..+.+||..+|.....+.... +..+.+.+| -|||..+++|+.|+.|..||..
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--GFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc--CCCcceeEE--ccCCceeEecCCCCcEEEecCC
Confidence 466899999999999999999999999999999999988876552 268899999 5899999999999999999985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. ....+|+... ...|.+ ++..+||.++++.+.|..|++++.++.. .+..+..+ .+|+++ ..+.++
T Consensus 343 g-----n~~~~W~gvr--~~~v~d----lait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise~--~~its~-~iS~d~ 407 (519)
T KOG0293|consen 343 G-----NILGNWEGVR--DPKVHD----LAITYDGKYVLLVTVDKKIRLYNREARV-DRGLISEE--QPITSF-SISKDG 407 (519)
T ss_pred c-----chhhcccccc--cceeEE----EEEcCCCcEEEEEecccceeeechhhhh-hhcccccc--CceeEE-EEcCCC
Confidence 4 2233444333 245566 7888999999999999999999998876 55555543 349999 788999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+++++.-.+..|++||+.... .++.+.+++. ...|..-+|--. +..++++||+|+.|+||+.+++ +++.++.+|..
T Consensus 408 k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq-~~fiIrSCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~ 483 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENK-LVRKYFGHKQ-GHFIIRSCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK 483 (519)
T ss_pred cEEEEEcccCeeEEeecchhh-HHHHhhcccc-cceEEEeccCCC-CcceEEecCCCceEEEEEccCC-ceeEeecCCcc
Confidence 999999999999999999665 5555544432 223444455433 4579999999999999999998 89999999999
Q ss_pred CeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|+|++|+|..+ ++|++|.||+|+||...
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999765 89999999999999753
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.7e-21 Score=220.88 Aligned_cols=256 Identities=18% Similarity=0.326 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE----------EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL----------LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~----------l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
.|.+.|+.+..-|..+ ++|+++..+.|.|||+.+..- -.++.+|. +.-.+|.|. ......|++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~---~eg~glsWn-~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE---KEGYGLSWN-RQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec---ccccccccc-cccceeEeecc
Confidence 4567899999988776 677788899999999875311 12677888 456778994 45677999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECC--CCceeeeeecCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLE--KEQQMVNPIPSSS 1178 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~--t~~~~v~~l~~~~ 1178 (1348)
.|+.|++||+.........+.....+.+|...|.. ++|++....++++ ++|+.+.|||++ +.+ +.....+|.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~ 272 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHS 272 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccC
Confidence 99999999997643333334444668899999999 8998877766655 899999999999 455 666677776
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
.. |.|+.+.+.++.+|++|+.|++|++||+|+...... .+.+|+..|.+|.|+|+ ....|++++.|+.+.+||+.
T Consensus 273 ~~-vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 273 AE-VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred Cc-eeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEEeCCC-CCceeEecccCCcEEEEecc
Confidence 65 999977777888999999999999999998775544 45578899999999999 88999999999999999997
Q ss_pred CCC-------------cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 000697 1259 NHK-------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1259 ~~~-------------~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g 1302 (1348)
.-+ +++.+..+|...|..+.|+|+.+ .|++.+.|+.+.||+...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 532 34566778999999999999988 677889999999999653
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=6.4e-21 Score=215.66 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=220.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-e-----------------eCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-F-----------------DNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~-~-----------------~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|...|.+|+++|++++.++++.+|+|.=|++.+|+.... + +.|. ..|.+++. ++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~---keil~~av--S~D 213 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV---KEILTLAV--SSD 213 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc---ceeEEEEE--cCC
Confidence 45778999999999999999999999999999988864411 1 1333 67899999 889
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
+.+|++|+.|..|.||+..+ . +.+ +.+.+|.+.|.+ ++|......+++++.|+.|++|++.... .+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t--~--ehv---~~~~ghr~~V~~----L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDT--L--EHV---KVFKGHRGAVSS----LAFRKGTSELYSASADRSVKVWSIDQLS-YVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcc--c--chh---hcccccccceee----eeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence 99999999999999999966 2 222 557899999988 8888888899999999999999999988 8899
Q ss_pred ecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1174 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1174 l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
+.+|++. |.+|... ..++.+.+|+.|+++++|++....++ .+.+|.+.+-|++|-. ...+++|+.||.|.
T Consensus 282 lyGHqd~-v~~IdaL-~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In---~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDG-VLGIDAL-SRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFIN---DEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccc-eeeechh-cccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEec---ccceeeccCCceEE
Confidence 9999887 9999544 45677777889999999999544322 2346678999999975 57899999999999
Q ss_pred EEEcCCCCcceEEEe-cC-----------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc--eEEEEeccCCcccccc
Q 000697 1254 FLDIRNHKDAYLTID-AH-----------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~-~h-----------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~--~l~~i~~~h~~f~~~~ 1319 (1348)
+|++-+. +++.+.. +| ..+|++++..|...++|+|+.+|.|++|.+... .+..+.. .+ -
T Consensus 352 LWs~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~-ls-----~ 424 (479)
T KOG0299|consen 352 LWSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS-LS-----L 424 (479)
T ss_pred Eeeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee-cc-----c
Confidence 9999987 6666554 33 127999999999999999999999999996432 2222221 11 2
Q ss_pred cCCeEEEEEeCCCCEEEEEE
Q 000697 1320 IGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs 1339 (1348)
.+.|++++|+++|..+++|.
T Consensus 425 ~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccEEEEEEEccCCCEEEEec
Confidence 37899999999999766663
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.5e-22 Score=229.68 Aligned_cols=279 Identities=21% Similarity=0.337 Sum_probs=220.6
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1040 TALLQ-PFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1040 sl~fs-pdg~~Latgs~dg~I~VWd~~t~~------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.+..+ |.+++|.+|+.||.|++|+..... .+.+++.|. +.|..+.. -.+++.|+++|.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIIL--CGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHh--hcCCCceEEecCCceEEEeecc
Confidence 44454 456689999999999999876432 366788898 89999998 4588899999999999999986
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEE-ecCCCeEEEEECCCeEEEEECCCCce-e--------eeeec-CCCCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQ-M--------VNPIP-SSSDCS 1181 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~w-s~~~~~Ll~gg~Dg~IrVWDl~t~~~-~--------v~~l~-~~~~~~ 1181 (1348)
. +. ..+..++..|...|.+ +++ -++...+++||-|+.|.+||++++.. . ...+. ++.. .
T Consensus 104 ~--~~---~~c~stir~H~DYVkc----la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-s 173 (735)
T KOG0308|consen 104 K--DN---TFCMSTIRTHKDYVKC----LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-S 173 (735)
T ss_pred c--Cc---chhHhhhhcccchhee----eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-c
Confidence 5 22 2344678999999999 666 66778888889999999999997630 1 22233 3334 4
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
|.++ ..++.|..|++|+..+.+++||.|+.++..+ .+||...|..+..+++ |..++++|.||+|++||+...
T Consensus 174 iYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kimk----LrGHTdNVr~ll~~dD--Gt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 174 IYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK----LRGHTDNVRVLLVNDD--GTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred eeee-ecCCcceEEEecCcccceEEeccccccceee----eeccccceEEEEEcCC--CCeEeecCCCceEEeeecccc-
Confidence 9999 6677889999999999999999999885443 3388899999999999 999999999999999999987
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
.++.++..|...|+++..+|+-..+.+|+.||.|..=|+......++-...+ .+|..+..+.+..-+-+++.|
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d-------aPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED-------APVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC-------CchhhhhhccccCCceeeecc
Confidence 8999999999999999999999999999999999998866522222222022 567777776555555666778
Q ss_pred CeEEEcC
Q 000697 1342 ACVSIHS 1348 (1348)
Q Consensus 1342 g~I~IWd 1348 (1348)
+.|+-|.
T Consensus 319 s~I~rW~ 325 (735)
T KOG0308|consen 319 SSIKRWK 325 (735)
T ss_pred ccceecC
Confidence 8888773
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=2.6e-21 Score=219.31 Aligned_cols=254 Identities=17% Similarity=0.316 Sum_probs=198.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEE---eeeecccCCCCcccccceEEEEecC-CCeEEEEECC
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV---TAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEV 1156 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv---s~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~D 1156 (1348)
+.|..+.+.| ++..++++++..+.|.|||........... ..--.+.+|...-.+ +.|++. .+.+++++.|
T Consensus 125 gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g----lsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 125 GEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYG----LSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccc----cccccccceeEeeccCC
Confidence 6888888874 688899999999999999986533332211 011246788875444 889765 5678888999
Q ss_pred CeEEEEECCCCce------eeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000697 1157 SSIMLWDLEKEQQ------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230 (1348)
Q Consensus 1157 g~IrVWDl~t~~~------~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~ 1230 (1348)
+.|++||+..... ....+.+|.+. |..+++...+.++|.+.+.||.+.|||.|++. .+......+|.+.|.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~-VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDV-VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcc-eehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccccCCcee
Confidence 9999999986541 23455666665 99998877788999999999999999999632 111123457889999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC--CceE--
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQL-- 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~--g~~l-- 1305 (1348)
|++|+|. ++..||+||.|++|++||+|+...++.++.+|+..|.++.|+|+.. +||+++.|+.+.|||++ |+..
T Consensus 277 ~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999998 7899999999999999999998899999999999999999999854 89999999999999964 2221
Q ss_pred --------EEEeccCCcccccccCCeEEEEEeCCCCE-EEEEECCCeEEEcC
Q 000697 1306 --------GTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 --------~~i~~~h~~f~~~~~~~Vtslafspdg~~-Latgs~Dg~I~IWd 1348 (1348)
.-+.. | ++|.+.|..+.|+|+..+ +++.+.|+.+.||.
T Consensus 356 eda~dgppEllF~-H----gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAEDGPPELLFI-H----GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhccCCcceeEE-e----cCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 11111 3 257789999999999965 66777899999994
No 85
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=2.7e-21 Score=218.66 Aligned_cols=282 Identities=15% Similarity=0.229 Sum_probs=229.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|+.-|.++.++...+++.||+ .|.|+|||+... ..+..+...+ .+.-|.++.. .+||..|++|+.-.++.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL--~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKL--LPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC-cccceeeeEe--cCCCceEEeccccceeee
Confidence 34667788999999999999999 899999999642 2333333322 2256888888 689999999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||+..... ++. ..+......... ++.++|.+..++++.||.|.|||+.... .++.+++|.++ +.|| ..
T Consensus 492 WDLAapTp--rik---aeltssapaCyA----La~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG-ascI-di 559 (705)
T KOG0639|consen 492 WDLAAPTP--RIK---AELTSSAPACYA----LAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI-DI 559 (705)
T ss_pred eeccCCCc--chh---hhcCCcchhhhh----hhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC-ceeE-Ee
Confidence 99976222 211 112222222333 7889999999999999999999999999 99999999998 9999 78
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+.+|..|.+|+-|.+||.||+|.+...... .+ .+.|.++...|. +.+++.|-.++.|.+...... ....+.
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqh--dF---~SQIfSLg~cP~--~dWlavGMens~vevlh~skp--~kyqlh 630 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DF---SSQIFSLGYCPT--GDWLAVGMENSNVEVLHTSKP--EKYQLH 630 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhh--hh---hhhheecccCCC--ccceeeecccCcEEEEecCCc--cceeec
Confidence 899999999999999999999988743321 22 478999999999 999999999999999888744 556677
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-|+.-|.++.|.+.|+++++.+.|..+..|. --|..+...+. .++|.++..+.+.++++||+.|....||
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCcceeeeeccCceEEEecCCCcceEEE
Confidence 7899999999999999999999999999999 45776666554 4789999999999999999999888776
No 86
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=7.2e-21 Score=224.64 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=221.8
Q ss_pred ccCCcccccccCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1022 KLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1022 kl~~~i~~Wd~~~~--------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
+....+.+|+.... +-+.+..|-|.+.++++|...|.+.|||+.+...+.++++|. +.|.+++. .+|
T Consensus 391 ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---gaIWsi~~--~pD 465 (888)
T KOG0306|consen 391 GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD---GAIWSISL--SPD 465 (888)
T ss_pred cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc---cceeeeee--cCC
Confidence 44567899998854 346678899999999999999999999999999999999999 99999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCC---CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQK---DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~---~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
+..++|||.|.+|++||..-.. +....+ ........-....-.+++.++|++.+++++=-|.+|+||-+.+-+ .
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~--lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-F 542 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKV--LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-F 542 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCccccee--eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-e
Confidence 9999999999999999984311 111110 000001111122223458999999999999999999999999988 7
Q ss_pred eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1171 v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
..++.+|.- +|.|| -.+++++++++|+.|..|++|-+.-+. +.+.+ -+|...|.++.|.|. ...+.+++.||
T Consensus 543 flsLYGHkL-PV~sm-DIS~DSklivTgSADKnVKiWGLdFGD-CHKS~---fAHdDSvm~V~F~P~--~~~FFt~gKD~ 614 (888)
T KOG0306|consen 543 FLSLYGHKL-PVLSM-DISPDSKLIVTGSADKNVKIWGLDFGD-CHKSF---FAHDDSVMSVQFLPK--THLFFTCGKDG 614 (888)
T ss_pred eeeeccccc-ceeEE-eccCCcCeEEeccCCCceEEeccccch-hhhhh---hcccCceeEEEEccc--ceeEEEecCcc
Confidence 888888866 59999 789999999999999999999999988 43332 367799999999998 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
.|+-||-... +.++++.+|...|+|++++|+|.+++++|.|..|++|..+.+
T Consensus 615 kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 615 KVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEeechhhh-hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9999999988 899999999999999999999999999999999999995543
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=5.8e-22 Score=208.10 Aligned_cols=240 Identities=19% Similarity=0.302 Sum_probs=206.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
.|.+.|.+..++.+-..-|+++.|-+-+|||.-+|..+.+|+.. .-|.+++| +.|.++|+||+.++.+||||+.
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk----hivk~~af--~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK----HIVKAVAF--SQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh----heeeeEEe--cccchhhhccchHHHhhhhhcc
Confidence 46688999999998889999999999999999999999988743 37899999 7899999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
..+..+ ..+.+|.+.|+. +.|...+..|+++.+|++||+||.+++. .++++... .+|+++ -.+++|
T Consensus 131 ~p~App------~E~~ghtg~Ir~----v~wc~eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~~--s~VtSl-Evs~dG 196 (334)
T KOG0278|consen 131 RPKAPP------KEISGHTGGIRT----VLWCHEDKCILSSADDKTVRLWDHRTGT-EVQSLEFN--SPVTSL-EVSQDG 196 (334)
T ss_pred CCCCCc------hhhcCCCCccee----EEEeccCceEEeeccCCceEEEEeccCc-EEEEEecC--CCCcce-eeccCC
Confidence 633333 357899999998 8888889999999999999999999999 89988874 348999 567788
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1271 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~ 1271 (1348)
+++.++ ..++|.+||..+-. .++.++. ...|.+..++|+ ...+++|+.|+.++.||..++ +.+..+ ++|.
T Consensus 197 ~ilTia-~gssV~Fwdaksf~-~lKs~k~----P~nV~SASL~P~--k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 RILTIA-YGSSVKFWDAKSFG-LLKSYKM----PCNVESASLHPK--KEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHF 267 (334)
T ss_pred CEEEEe-cCceeEEecccccc-ceeeccC----ccccccccccCC--CceEEecCcceEEEEEeccCC-ceeeecccCCC
Confidence 877665 46789999999877 5554432 267999999999 799999999999999999998 566664 8999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
++|.|+.|+|+|...|+||.||+|++|...
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999999999999954
No 88
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=7.1e-20 Score=224.14 Aligned_cols=228 Identities=13% Similarity=0.184 Sum_probs=178.2
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeC
Q 000697 1032 TRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASC 1102 (1348)
Q Consensus 1032 ~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~ 1102 (1348)
..|.+.|.+++|+| ++.+|++|+.||+|+|||+.++ +.+..+.+|. ..|.+++| ++++ ++|++|+.
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---~~V~~l~f--~P~~~~iLaSgs~ 146 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---KKVGIVSF--HPSAMNVLASAGA 146 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---CcEEEEEe--CcCCCCEEEEEeC
Confidence 35678999999999 7889999999999999999765 3467788898 89999999 5654 79999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~V 1182 (1348)
||+|+|||+.+ +.. . ..+.+|...|.+ ++|++++..+++++.||.|++||+++++ .+..+..|.+..+
T Consensus 147 DgtVrIWDl~t--g~~--~---~~l~~h~~~V~s----la~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~ 214 (493)
T PTZ00421 147 DMVVNVWDVER--GKA--V---EVIKCHSDQITS----LEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKS 214 (493)
T ss_pred CCEEEEEECCC--CeE--E---EEEcCCCCceEE----EEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcc
Confidence 99999999976 322 2 346788888887 9999999999999999999999999998 8888888866534
Q ss_pred EEEEEecCCCCEEEEEe----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEc
Q 000697 1183 SALTASQVHGGQLAAGF----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDI 1257 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs----~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDl 1257 (1348)
..+ .+.++++.+++++ .|+.|++||+++.......... .+...+....|+++ ++.+++|+ .||.|++||+
T Consensus 215 ~~~-~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d--~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 215 QRC-LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDED--TNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEE-EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCC--CCEEEEEEeCCCeEEEEEe
Confidence 444 4455666666543 4799999999976644443321 22345666778888 88888877 5999999999
Q ss_pred CCCCcceEEEec-CCCCeEEEEEeCC
Q 000697 1258 RNHKDAYLTIDA-HRGSLSALAVHRH 1282 (1348)
Q Consensus 1258 r~~~~~v~t~~~-h~~~VtsLa~spd 1282 (1348)
+++ ..+..... +..++.+++|.|.
T Consensus 290 ~~~-~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 290 MNE-RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCC-ceEEEeeccCCCCCcceEeccc
Confidence 987 55555443 4556788888885
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=210.38 Aligned_cols=243 Identities=17% Similarity=0.279 Sum_probs=216.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...|.|+.|+.|...||+|+.||.|+||.+++|.+++.|. +|. .+|+|+.| +.|+..+++++.|.++||.-+..
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt---kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT---KGVTCLSF--SRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc---cCeeEEEE--ccCcchhhcccccceEEEecccc
Confidence 4789999999999999999999999999999999999997 788 89999999 88999999999999999998865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg 1192 (1348)
|+. . +.+.+|...|+. ..|.++|.++++++.||+|+||+..+.+ |+.+++. ..+.+|.++..++.+.
T Consensus 338 --GK~--L---KEfrGHsSyvn~----a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 338 --GKC--L---KEFRGHSSYVNE----ATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred --chh--H---HHhcCccccccc----eEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCC
Confidence 332 2 668999999998 8899999999999999999999999999 9999874 3456789987888888
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
..++.+...++|.+-++... .++.+..-....+...+.+.+|. |.++.+.+.|+.+..|.+.++ ..-+++..|+.
T Consensus 406 eh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi~~~lSpk--GewiYcigED~vlYCF~~~sG-~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFINAILSPK--GEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEK 480 (508)
T ss_pred ceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceEEEEecCC--CcEEEEEccCcEEEEEEeecC-ceeeeeecccc
Confidence 99999999999999988653 56666444444567778889999 999999999999999999998 78899999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.+-.++-||+.+.+|+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999994
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-19 Score=198.57 Aligned_cols=246 Identities=19% Similarity=0.262 Sum_probs=199.4
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
+.|.... +.|+++.| +++|.+|++++.|.++++||... +++. +++..+...+.. ++|......+
T Consensus 8 k~f~~~~---~~i~sl~f--s~~G~~litss~dDsl~LYd~~~--g~~~-----~ti~skkyG~~~----~~Fth~~~~~ 71 (311)
T KOG1446|consen 8 KVFRETN---GKINSLDF--SDDGLLLITSSEDDSLRLYDSLS--GKQV-----KTINSKKYGVDL----ACFTHHSNTV 71 (311)
T ss_pred cccccCC---CceeEEEe--cCCCCEEEEecCCCeEEEEEcCC--Ccee-----eEeecccccccE----EEEecCCceE
Confidence 3444444 78999999 89999999999999999999976 4332 334555555555 7787777777
Q ss_pred EEEEC--CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1151 YASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1151 l~gg~--Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
+.++. |.+||..++.+.+ .++.+.+|... |++| ..+|.++.|++++.|++|++||+|..++..... . ..
T Consensus 72 i~sStk~d~tIryLsl~dNk-ylRYF~GH~~~-V~sL-~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~-----~~ 142 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNK-YLRYFPGHKKR-VNSL-SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-L-----SG 142 (311)
T ss_pred EEccCCCCCceEEEEeecCc-eEEEcCCCCce-EEEE-EecCCCCeEEecccCCeEEeeEecCCCCceEEe-c-----CC
Confidence 77764 8899999999999 99999999887 9999 667778999999999999999999777433221 1 33
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCc
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGE 1303 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h---~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~ 1303 (1348)
-..++|.|. |-++|+|...+.|++||+|.. +.+..++... ....+.+.|+|+|++|+.++..+.+++.| .+|.
T Consensus 143 ~pi~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 143 RPIAAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CcceeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 446789999 999999998889999999975 3566776644 56789999999999999999999999999 8999
Q ss_pred eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1304 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1304 ~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.++.. +.. . ..---+..|.||++++++|+.||+|.+|+
T Consensus 221 ~~~tfs~-~~~---~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 221 VKSTFSG-YPN---A-GNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EeeeEee-ccC---C-CCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 9999887 541 1 11225678999999999999999999996
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=2.1e-20 Score=219.74 Aligned_cols=273 Identities=15% Similarity=0.312 Sum_probs=217.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--EeeCCCCCCCCeEE-EEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISK-LCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~--~~~~h~~~~~~Its-L~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|...|..+++.+. ..+++++.||++++|+-..++.+. .+.+|. +-|.. ++|.. .++..|++|+.|+.|.+
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAE-SDKGRLVVGGMDTTIIV 85 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceecc-ccCcceEeecccceEEE
Confidence 345667777777654 488999999999999987655443 466666 56665 88853 57778999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... .. ++..+.+|...|.+ +.-..+ +.+++|+.|.++++|-.. + +...+++|... |+++..+
T Consensus 86 ~~~~~--~~-----P~~~LkgH~snVC~----ls~~~~-~~~iSgSWD~TakvW~~~--~-l~~~l~gH~as-VWAv~~l 149 (745)
T KOG0301|consen 86 FKLSQ--AE-----PLYTLKGHKSNVCS----LSIGED-GTLISGSWDSTAKVWRIG--E-LVYSLQGHTAS-VWAVASL 149 (745)
T ss_pred EecCC--CC-----chhhhhccccceee----eecCCc-CceEecccccceEEecch--h-hhcccCCcchh-eeeeeec
Confidence 99854 22 23568999999987 444434 449999999999999754 3 66778988776 9999666
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+. + .+++|+.|.+|++|.-. + ..+ ++.+|.+.|+.+++-++ ..|++++.||.|++|++. + +++..+.
T Consensus 150 ~e-~-~~vTgsaDKtIklWk~~--~-~l~---tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~~-g-e~l~~~~ 216 (745)
T KOG0301|consen 150 PE-N-TYVTGSADKTIKLWKGG--T-LLK---TFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDLD-G-EVLLEMH 216 (745)
T ss_pred CC-C-cEEeccCcceeeeccCC--c-hhh---hhccchhheeeeEEecC---CCeEeecCCceEEEEecc-C-ceeeeee
Confidence 43 3 89999999999999752 2 334 55688999999999875 678999999999999995 3 7999999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|...|.+++...++..++++++|++++||+.. +..+.+.- .. ..|+++.+-++|. +++|++||.|+||.
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~l-Pt-------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITL-PT-------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEec-Cc-------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 999999999988888899999999999999966 67777764 22 5799999988886 56778899999984
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=2.6e-20 Score=228.26 Aligned_cols=241 Identities=19% Similarity=0.362 Sum_probs=203.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|.++|.+++|..-++.|++|+.|.+++|||..+|++...+.+|. ..|.++.. .+..+++|+.|.+|++|++..
T Consensus 248 H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~----~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 248 HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT---SSVRCLTI----DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC---ceEEEEEc----cCceEeeccCCceEEEEeccC
Confidence 45889999998888899999999999999999999999999999 88888876 667888999999999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+. .+ +.+.+|...|++ +..+ +..+++|+.||+|+|||+.+.+ ++.++.+|... |+++ ..... +
T Consensus 321 --~~--~l---~l~~~h~~~V~~----v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~-V~sl-~~~~~-~ 383 (537)
T KOG0274|consen 321 --GA--CL---NLLRGHTGPVNC----VQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGR-VYSL-IVDSE-N 383 (537)
T ss_pred --cc--eE---EEeccccccEEE----EEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcce-EEEE-EecCc-c
Confidence 32 22 446679999988 5554 8899999999999999999999 99999998776 9999 44333 8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-CCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-HRG 1272 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-h~~ 1272 (1348)
.+++|+.|++|++||+++...++. +..+|..-+..+.+. ++.|++++.||+|++||..++ ++++++.+ |.+
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~----~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~ 455 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLR----DNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVG 455 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccc----cceeEeccccccEEEeecccC-ceeeeeccCCcc
Confidence 999999999999999999832444 445677888777664 779999999999999999998 89999998 678
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEE
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1308 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i 1308 (1348)
.|+.+++. ...+++++.||.+++||+. +.....+
T Consensus 456 ~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 456 GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 88888876 5688899999999999954 5554444
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=209.85 Aligned_cols=286 Identities=15% Similarity=0.243 Sum_probs=223.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEec
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~--t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl 1111 (1348)
.++|++|.|||..+.|++|+.||+++||.++ ....++.+.-.. .+|.+.+| .++|. .+++++.......||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f--~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEF--APNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc---Cccceeee--cCCCceEEEecccceEEEEeec
Confidence 3789999999999999999999999999876 334555555445 78999999 67888 8999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCC-cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKP-GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~-~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
.+ .+...+ ....++.. .+.. ...++++.+|+..|..|.|.+....+++ .+.+++.. +.|..+ .++.
T Consensus 288 e~--ak~~k~---~~~~g~e~~~~e~----FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~Kie--G~v~~~-~fsS 354 (514)
T KOG2055|consen 288 ET--AKVTKL---KPPYGVEEKSMER----FEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIE--GVVSDF-TFSS 354 (514)
T ss_pred cc--cccccc---cCCCCcccchhhe----eEecCCCCeEEEcccCceEEeehhhhhh-hhheeeec--cEEeeE-EEec
Confidence 76 333323 33444442 2333 6778999999999999999999999998 88887753 348888 5567
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-----CCcceE
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-----HKDAYL 1265 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~-----~~~~v~ 1265 (1348)
++..|++.+.+|.|.+||++... +.+.+.... .-.-++++.+++ +.+|++||..|.|.|||..+ ..+++.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G--~v~gts~~~S~n--g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNS-CLHRFVDDG--SVHGTSLCISLN--GSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcc-eEEEEeecC--ccceeeeeecCC--CceEEeccCcceEEEeccchhhccCCCCchh
Confidence 89999999999999999999996 666664331 122345666677 99999999999999999653 226777
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCceE-EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSA--KQLIKVFSLEGEQL-GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~--Dg~I~Vwd~~g~~l-~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
++..-...|+++.|++++.+||.+|. +..+++-.+....+ ..+.. .....+.|+||+|+|.+.+||.|..+|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-----~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-----SNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-----CCCcccceEEEEecCCCceEEeecCCC
Confidence 77777788999999999999988864 55677776543222 22222 234568899999999999999999999
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.|.+|.
T Consensus 505 rv~l~k 510 (514)
T KOG2055|consen 505 RVHLFK 510 (514)
T ss_pred ceeeEe
Confidence 999994
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=213.62 Aligned_cols=239 Identities=16% Similarity=0.283 Sum_probs=198.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...+.++.|-.||++|++|+..|.|+|||..+...++.+.+|. .+|..+.|. ..++..+++|++|+.+++||+.+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~---apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~- 142 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ---APVHVTKFS-PQDNTMLVSGSDDKVVKYWDLST- 142 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc---CceeEEEec-ccCCeEEEecCCCceEEEEEcCC-
Confidence 3579999999999999999999999999987777888899999 899999995 36778899999999999999976
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.... ..+.+|++.|++ .+|+|.++ .+++||.||.|++||++.....+.++. ++.+|.++ .+-+.|.
T Consensus 143 -a~v~-----~~l~~htDYVR~----g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~v-l~lpsgs 209 (487)
T KOG0310|consen 143 -AYVQ-----AELSGHTDYVRC----GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESV-LALPSGS 209 (487)
T ss_pred -cEEE-----EEecCCcceeEe----eccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeE-EEcCCCC
Confidence 2221 358899999999 78888776 566668999999999998742565655 35679999 4456778
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
.+++++. ..|++||+-++......+ ..|...|+|+++..+ +..|++|+-||.|++||+.+. +.+..+. ..++
T Consensus 210 ~iasAgG-n~vkVWDl~~G~qll~~~---~~H~KtVTcL~l~s~--~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~-~~~p 281 (487)
T KOG0310|consen 210 LIASAGG-NSVKVWDLTTGGQLLTSM---FNHNKTVTCLRLASD--STRLLSGSLDRHVKVFDTTNY-KVVHSWK-YPGP 281 (487)
T ss_pred EEEEcCC-CeEEEEEecCCceehhhh---hcccceEEEEEeecC--CceEeecccccceEEEEccce-EEEEeee-cccc
Confidence 8887764 589999999776555433 237799999999988 899999999999999998876 7777776 4678
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
|.+++++|++..++.|-.||.+.+-+
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeeh
Confidence 99999999999999999999887765
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=2e-19 Score=215.15 Aligned_cols=287 Identities=14% Similarity=0.279 Sum_probs=221.3
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
++|++++|.-||+ ++++|+..|.+.+||++..+.+.... .|. +.|+...|. +....+++++.|..+++|=...
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~---~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY---GSVTGATFL--PGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc---CCcccceec--CCCceEeeccCCCceeEEEeeC
Confidence 7899999999997 67788888999999999888877766 676 789999994 5788999999999999997766
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEe-cCCCeEEEEECCCeEEEEE-----------------------------
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWD----------------------------- 1163 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~~~~Ll~gg~Dg~IrVWD----------------------------- 1163 (1348)
.++.+++. +.-.||..+..+ +.|. .++..++.++.|++.+.++
T Consensus 320 ~dg~pR~L---R~R~GHs~Pp~~----irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 320 GDGVPRLL---RSRGGHSAPPSC----IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred CCCcchhe---eeccCCCCCchh----eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 55666655 444566666655 3433 3444455555555555443
Q ss_pred ------------------------------------CCCCcee-eeeecCC----CCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1164 ------------------------------------LEKEQQM-VNPIPSS----SDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1164 ------------------------------------l~t~~~~-v~~l~~~----~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
.+... . ...+... .+..++++ +.+..|++.+.|+..|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-~G~~~L~~~~~~~~~~~~~av-~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-SGRHVLDPKRFKKDDINATAV-CVSFCGNFVFIGYSKG 470 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-cccEEecCccccccCcceEEE-EEeccCceEEEeccCC
Confidence 33322 1 1111111 12347777 6778999999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---------------------
Q 000697 1203 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------------------- 1261 (1348)
Q Consensus 1203 ~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--------------------- 1261 (1348)
.|-+|++.++- ....+.....|++.|++++.... ++.+++++.+|.+++||..+..
T Consensus 471 ~Id~fNmQSGi-~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 471 TIDRFNMQSGI-HRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred eEEEEEcccCe-eecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 99999999886 44444334578899999999877 8999999999999999987531
Q ss_pred -------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccC
Q 000697 1262 -------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIG 1321 (1348)
Q Consensus 1262 -------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~ 1321 (1348)
+.++.+.+|.+.|++++|||+|++|++++.|++|++|| .++..+-.+.. . .
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d--------~ 618 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-D--------S 618 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-C--------C
Confidence 12344557899999999999999999999999999999 67888887765 2 6
Q ss_pred CeEEEEEeCCCCEEEEEECC-CeEEEcC
Q 000697 1322 SVNCLTFHPYQVLLAAGSAD-ACVSIHS 1348 (1348)
Q Consensus 1322 ~Vtslafspdg~~Latgs~D-g~I~IWd 1348 (1348)
+.+++.|+|+|.+|||...| .-|++|.
T Consensus 619 ~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cceeeEECCCCCEEEEEEecCceEEEEE
Confidence 89999999999999999998 6788884
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=6.9e-20 Score=197.84 Aligned_cols=255 Identities=20% Similarity=0.310 Sum_probs=197.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
+.+....++.+.|.+|+|++ ....++++||.||+||+|++... +...- +....|.+++.+ ++|+.++..+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~-g~~~~----ka~~~~~~PvL~----v~WsddgskV 87 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNS-GQLVP----KAQQSHDGPVLD----VCWSDDGSKV 87 (347)
T ss_pred cceecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecC-Ccccc----hhhhccCCCeEE----EEEccCCceE
Confidence 34455556678999999943 36677889999999999999762 22111 456678888877 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
++|+.|+.+++||+.+++ +..+..|.. +|.++.|..... ..|++|+-|.+|+.||.|.... +..+ .+. ..+
T Consensus 88 f~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~-~LP---eRv 159 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ--VSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATL-QLP---ERV 159 (347)
T ss_pred EeeccCCceEEEEccCCC--eeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCe-eeee-ecc---cee
Confidence 999999999999999998 667777755 499997775433 5889999999999999998874 4444 222 567
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---ceE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG---EQL 1305 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g---~~l 1305 (1348)
.++..- ...++++..+..|.+|+++++....+.+. .-+-.++|++...++...|.|+-+|++.|..++. +.-
T Consensus 160 Ya~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 160 YAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred eehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 777663 56889999999999999986532222222 1244689999999999889999999999998653 455
Q ss_pred EEEeccCCccc--ccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFM--AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~--~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+|++ |..-. ......|++++|||....|+|+|+||++.+||
T Consensus 236 FtFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 236 FTFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 57888 65311 12356799999999999999999999999997
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=5e-20 Score=195.71 Aligned_cols=249 Identities=14% Similarity=0.238 Sum_probs=199.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-----CeEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIR 1107 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~Ir 1107 (1348)
.|.+.|.|+..+-+.++|++|+.|.++++||+++|+.+.+++... .|..+.| +.+|++++...++ +.|.
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~----~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS----PVKRVDF--SFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----eeEEEee--ccCCcEEEEEehhhcCcceEEE
Confidence 356889999999999999999999999999999999999998776 8999999 7788888877554 6799
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
++|+........-..++..+..+...++. +-|.+-+..|++|..||.|.+||++++++.+.....|... |+.| .
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~----a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-Ind~-q 197 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITS----ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-INDL-Q 197 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceee----eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-cccc-c
Confidence 99997533222112223445656666665 8899999999999999999999999987456666666664 9999 7
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc--E------------E
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD--I------------Q 1253 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~--I------------~ 1253 (1348)
++++..+|++|+.|.+-++||.++-. ..+++.+. .+|++.+++|. ...++.|+.... | +
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te----~PvN~aaisP~--~d~VilgGGqeA~dVTTT~~r~GKFEAr 270 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE----RPVNTAAISPL--LDHVILGGGQEAMDVTTTSTRAGKFEAR 270 (327)
T ss_pred ccCCcceEEecccCccceeeecccee-eEEEeeec----ccccceecccc--cceEEecCCceeeeeeeecccccchhhh
Confidence 88999999999999999999999988 67777554 69999999998 555555543211 2 2
Q ss_pred EEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+|++-.. +.+..+++|-++|++++|||+|+..++|+.||.|++.-.+
T Consensus 271 Fyh~i~e-EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 271 FYHLIFE-EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHHH-HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 2222222 5677888999999999999999999999999999998644
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=4.9e-20 Score=195.34 Aligned_cols=242 Identities=19% Similarity=0.282 Sum_probs=197.9
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCe
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGY 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~ 1149 (1348)
+.+++|. ..|.+++| +.+|..|++|+.|+++++|++.......+ ....+|.+.|.. ++|++. ...
T Consensus 14 r~~~~~~---~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~svdq----l~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHV---QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDSVDQ----LCWDPKHPDL 79 (313)
T ss_pred HHhhhhh---hcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----hcccCCCcchhh----heeCCCCCcc
Confidence 3456676 78999999 78999999999999999999976321112 236788888888 777665 456
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++++.|++|++||+++++ ++..+....+. |.- .++|+|+++++|..|..|.+.|.|+.+ ..... .....+
T Consensus 80 ~atas~dk~ir~wd~r~~k-~~~~i~~~~en-i~i--~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~----~~~~e~ 150 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGK-CTARIETKGEN-INI--TWSPDGEYIAVGNKDDRITFIDARTYK-IVNEE----QFKFEV 150 (313)
T ss_pred eEEecCCceEEEEEeccCc-EEEEeeccCcc-eEE--EEcCCCCEEEEecCcccEEEEEecccc-eeehh----ccccee
Confidence 7777899999999999999 88888766554 544 467899999999999999999999887 33332 123678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTI 1308 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i 1308 (1348)
..++|+-+ +++++.....|.|.|...... +++.++++|...-.|+.|+|+|+++|+|+.|..+.+||++. -++..+
T Consensus 151 ne~~w~~~--nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 151 NEISWNNS--NDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeecCC--CCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 89999965 888888888899999999988 89999999999999999999999999999999999999653 344445
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.. ++ -+|..++|+-+|++||+||.|..|-|
T Consensus 228 sR-ld-------wpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 SR-LD-------WPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cc-cc-------CceEEEEeccCcceeeccCccceEEe
Confidence 44 43 68999999999999999999998865
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.2e-20 Score=221.71 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=227.3
Q ss_pred CcccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE
Q 000697 1025 NPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA 1100 (1348)
Q Consensus 1025 ~~i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg 1100 (1348)
.....|..+......+|...++-..+++++ ...+.||..... ++...++........+..++|. +-+.++|+|+
T Consensus 29 l~~~~~~~~~k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~ 106 (839)
T KOG0269|consen 29 LPYDKMNCKLKAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATC 106 (839)
T ss_pred ccchheeeecccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheee
Confidence 344557777778899999999999999888 668888877543 2222222222112356678885 5688999999
Q ss_pred eCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1101 s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~-Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
+..|.|.+||+... ....+. ..+..|...+.+ ++|++...+ |++|+.||.|++||++..+ -..++.+..+
T Consensus 107 s~nG~i~vWdlnk~-~rnk~l---~~f~EH~Rs~~~----ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSE 177 (839)
T KOG0269|consen 107 STNGVISVWDLNKS-IRNKLL---TVFNEHERSANK----LDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSE 177 (839)
T ss_pred cCCCcEEEEecCcc-ccchhh---hHhhhhccceee----eeeccCCccEEEecCCCceEEEEeeeccc-ccccccccch
Confidence 99999999999652 222332 357899999988 999887654 5666799999999999988 7888888777
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
+ |..+.+.+..++.|+++...|.+++||+|..+..... +..|.++|.++.|+|+ +.+||||+.|+.|+|||+..
T Consensus 178 S-iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k---~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 178 S-IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK---LTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred h-hhceeeccCCCceEEEecCCceEEEeeccCchhHHHH---hhcccCceEEEeecCC--CceeeecCCCccEEEEeccC
Confidence 6 9999888888999999999999999999988755543 4577899999999998 99999999999999999985
Q ss_pred CC-cceEEEecCCCCeEEEEEeCCCC-EEEEEe--CCCcEEEEEcCCce--EEEEeccCCcccccccCCeEEEEEeC-CC
Q 000697 1260 HK-DAYLTIDAHRGSLSALAVHRHAP-IIASGS--AKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHP-YQ 1332 (1348)
Q Consensus 1260 ~~-~~v~t~~~h~~~VtsLa~spdg~-~LasgS--~Dg~I~Vwd~~g~~--l~~i~~~h~~f~~~~~~~Vtslafsp-dg 1332 (1348)
.. .+..++. ...+|.++.|-|..+ .||+++ .|-.|+|||++..- ..++.. |. ..++.++|-. +.
T Consensus 252 ~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~-------~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 252 SRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HT-------DSVTGIAWDSGDR 322 (839)
T ss_pred CCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cC-------ccccceeccCCCc
Confidence 42 3444444 346899999999876 566664 47789999976533 345555 54 7899999965 45
Q ss_pred CEEEEEECCCeEE
Q 000697 1333 VLLAAGSADACVS 1345 (1348)
Q Consensus 1333 ~~Latgs~Dg~I~ 1345 (1348)
..|.+++.||+|.
T Consensus 323 ~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 323 INLWSCSKDGTVL 335 (839)
T ss_pred eeeEeecCccHHH
Confidence 7888999999764
No 100
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=3.4e-19 Score=219.19 Aligned_cols=222 Identities=13% Similarity=0.170 Sum_probs=170.4
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCc-------eee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQ-------QMV 1171 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~-------~~v 1171 (1348)
|+.+|.|++|+... . ..+ ..+.+|...|.+ ++|+|+ +..|++|+.||.|++||+.++. .++
T Consensus 50 GG~~gvI~L~~~~r--~--~~v---~~L~gH~~~V~~----lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMR--K--PPV---IKLKGHTSSILD----LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCC--C--ceE---EEEcCCCCCEEE----EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence 67788999999754 2 222 457899999988 999997 6788899999999999997642 023
Q ss_pred eeecCCCCCCeEEEEEecCCCC-EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1172 NPIPSSSDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
..+.+|... |.++ .++|++. ++++|+.||+|++||+++++. ...+ .|...|.+++|+|+ |.+|++++.|+
T Consensus 119 ~~L~gH~~~-V~sV-af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i----~~~~~V~Slswspd--G~lLat~s~D~ 189 (568)
T PTZ00420 119 CILKGHKKK-ISII-DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQI----NMPKKLSSLKWNIK--GNLLSGTCVGK 189 (568)
T ss_pred EEeecCCCc-EEEE-EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEE----ecCCcEEEEEECCC--CCEEEEEecCC
Confidence 456666654 9999 5667665 457899999999999998873 3333 13468999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEEE-----EEeCCCCEEEEEeCCC----cEEEEEcC--CceEEEEeccCCcccccc
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSAL-----AVHRHAPIIASGSAKQ----LIKVFSLE--GEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~VtsL-----a~spdg~~LasgS~Dg----~I~Vwd~~--g~~l~~i~~~h~~f~~~~ 1319 (1348)
.|+|||++++ ..+.++.+|.+.+.+. .|++++.+|++++.|+ .|+|||+. ++.+..+.. +. +
T Consensus 190 ~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~-----~ 262 (568)
T PTZ00420 190 HMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DN-----A 262 (568)
T ss_pred EEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cC-----C
Confidence 9999999997 7888999998765433 3458888888887764 79999965 455655543 22 2
Q ss_pred cCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.+......+++.++++|+.|+.|++|+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 34444555566789999999999999995
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.5e-19 Score=193.36 Aligned_cols=242 Identities=17% Similarity=0.290 Sum_probs=196.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|.+.|++++. +++++|+|+.|.+|+|||..+.+.+..+-.|. +.|+++.|........|++|++||.|.+|+.
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 346789999998 48899999999999999999999999999998 8999999943223348999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
+..+++ ..+.+|.+.|+. ++.+|.+..-++.|.|+.++.||+-+++ .-...+-.+. -+.+ .|.+.
T Consensus 115 ----~~W~~~---~slK~H~~~Vt~----lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~--at~v-~w~~~ 179 (362)
T KOG0294|consen 115 ----GSWELL---KSLKAHKGQVTD----LSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNK--ATLV-SWSPQ 179 (362)
T ss_pred ----CCeEEe---eeecccccccce----eEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCc--ceee-EEcCC
Confidence 556666 778899999998 8999999999999999999999999887 4444443333 2345 56789
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
|.+|+.+..+ .|-+|.+.+.. +.... .. ...+.++.|. .+.++++|..|+.|++||.... .+...+.+|.
T Consensus 180 Gd~F~v~~~~-~i~i~q~d~A~-v~~~i-~~---~~r~l~~~~l---~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~ 249 (362)
T KOG0294|consen 180 GDHFVVSGRN-KIDIYQLDNAS-VFREI-EN---PKRILCATFL---DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHE 249 (362)
T ss_pred CCEEEEEecc-EEEEEecccHh-Hhhhh-hc---cccceeeeec---CCceEEEecCCceEEEeccCCC-ccceeeecch
Confidence 9999988876 58899888765 33222 11 1346666664 4789999999999999999986 8999999999
Q ss_pred CCeEEEEE--eCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1272 GSLSALAV--HRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1272 ~~VtsLa~--spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
..|.++.+ .|++.+|+++|.||.|+|||++.+
T Consensus 250 ~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999985 456789999999999999997644
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.9e-20 Score=215.97 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=199.0
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC--c
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE--Q 1168 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~--~ 1168 (1348)
-+.+++|+|||.||.|++|++....+..... ....+..|...|..+.++ .+++.+++++.|-+|++|+.... -
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~----~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILC----GNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhh----cCCCceEEecCCceEEEeecccCcch
Confidence 3577789999999999999997644432111 134577899999985543 46779999999999999999887 5
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-eeEeec-----CC-CCCCCCeEEEEEecCCCCC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTR-----PH-TQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-~v~~~~-----~~-~~h~~~I~sl~~sp~~~g~ 1241 (1348)
|+.++..|.+. |.|++...++..++++|+-|+.|.+||+.++.. .+..+. .. .|+...|.+++.++. |.
T Consensus 109 -c~stir~H~DY-Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t 184 (735)
T KOG0308|consen 109 -CMSTIRTHKDY-VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GT 184 (735)
T ss_pred -hHhhhhcccch-heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc--ce
Confidence 88899999887 999966577889999999999999999997632 111111 12 278899999999998 89
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCccccccc
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~ 1320 (1348)
.|++|+..+.+++||.++. +.+..+++|...|.++..+++|..++++|.||+|++||+. .+++.++.. |.
T Consensus 185 ~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~------- 255 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HK------- 255 (735)
T ss_pred EEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-cc-------
Confidence 9999999999999999998 7788888999999999999999999999999999999975 567788887 65
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|+++..+|+-..+.+|+.||.|..
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEe
Confidence 66999999999999999999998864
No 103
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-19 Score=209.09 Aligned_cols=294 Identities=19% Similarity=0.298 Sum_probs=222.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|.+.|.++..+|.|.+|++|+.||+|+||.+.+|.+++++.... .|.|++|.+..+-..|+++-.+. +.|-+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 3467889999999999999999999999999999999999988665 89999996555555666665544 444433
Q ss_pred cCCC------Cc----------e--eEEeee------------ecccCCCCcccccceEEEEecCCCeEEEEE---CCCe
Q 000697 1112 YDQK------DK----------Q--KLVTAF------------SSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSS 1158 (1348)
Q Consensus 1112 ~~~~------~~----------~--~lvs~~------------~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~ 1158 (1348)
.-+. .+ . ..+..| +..-.|...|+. +.|+..|.+|++.. ....
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~----vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ----VTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce----eeeecCCceEEEeccCCCcce
Confidence 1100 00 0 000011 112235566666 99999999999984 3467
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
|.|.++.+.. ....+....+. |.++ .|+|...+|++++ ...|++||+.... .++.+.+. ..+|.+++++|.
T Consensus 548 VliHQLSK~~-sQ~PF~kskG~-vq~v-~FHPs~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg---~kwiS~msihp~- 618 (733)
T KOG0650|consen 548 VLIHQLSKRK-SQSPFRKSKGL-VQRV-KFHPSKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTG---SKWISSMSIHPN- 618 (733)
T ss_pred EEEEeccccc-ccCchhhcCCc-eeEE-EecCCCceEEEEe-ccceEEEehhHHH-HHHHHhcC---CeeeeeeeecCC-
Confidence 9999998877 55555544444 8888 5566666666655 4689999998865 55444333 378999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cC-----C---ceEEEE
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LE-----G---EQLGTI 1308 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~-----g---~~l~~i 1308 (1348)
|..|+.|+.|+.+..||+....++.+++..|...+++++||+.-++||+|+.||++.|+. +. . -++..+
T Consensus 619 -GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 619 -GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred -CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 999999999999999999987789999999999999999999999999999999999886 21 1 234556
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++ |.. .....|..+.|||...+|++++.||+|++|-
T Consensus 698 ~g-H~~---~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RG-HEK---TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cC-cee---ecccceEeecccCCCceEEecCCCceEEeeC
Confidence 66 541 1335688999999999999999999999983
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=210.88 Aligned_cols=248 Identities=19% Similarity=0.326 Sum_probs=203.4
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~ 1149 (1348)
...+..|. +.+..+.| -++...|++|+.|..|++|++.. ++.+++ .++.+..+.+.. ++|.+++.+
T Consensus 168 ~~~ld~h~---gev~~v~~--l~~sdtlatgg~Dr~Ik~W~v~~--~k~~~~---~tLaGs~g~it~----~d~d~~~~~ 233 (459)
T KOG0288|consen 168 LFVLDAHE---GEVHDVEF--LRNSDTLATGGSDRIIKLWNVLG--EKSELI---STLAGSLGNITS----IDFDSDNKH 233 (459)
T ss_pred hhhhhccc---cccceeEE--ccCcchhhhcchhhhhhhhhccc--chhhhh---hhhhccCCCcce----eeecCCCce
Confidence 34456677 88999999 56778999999999999999966 444444 667788888888 999999999
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++++.|+.+++|++...+ ...++.+|.+. |+++.+.. ....+++|+.|.+|++||+.... +.+..-. .+.+
T Consensus 234 ~iAas~d~~~r~Wnvd~~r-~~~TLsGHtdk-Vt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~----~S~c 305 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLR-LRHTLSGHTDK-VTAAKFKL-SHSRVVSGSADRTIKLWDLQKAY-CSKTVLP----GSQC 305 (459)
T ss_pred EEeecCCCceeeeeccchh-hhhhhcccccc-eeeehhhc-cccceeeccccchhhhhhhhhhh-eeccccc----cccc
Confidence 9999999999999999998 89999998887 99995554 34449999999999999999876 3333212 2566
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEe
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
..|..+ ...+++|..|++|++||++.. .++.+...+. .|+++..+++|..+.+++.|.++++.|..+..+....
T Consensus 306 nDI~~~----~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 306 NDIVCS----ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred cceEec----ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 777765 347899999999999999988 7888888765 8999999999999999999999999998776665433
Q ss_pred ccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1310 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1310 ~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
. -.+|... +..+.+.|||++.|+|+||.||.|+||+
T Consensus 380 s-A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 380 S-AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred e-ccccccc--cccceeEECCCCceeeeccCCCcEEEEE
Confidence 3 3334333 3489999999999999999999999996
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-20 Score=222.01 Aligned_cols=244 Identities=21% Similarity=0.350 Sum_probs=188.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIM 1160 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~Ir 1160 (1348)
...+|.. .++-..++.++.. .++||.+........+...++.-+.....+. .+.|.+- .+.|++++..|.|.
T Consensus 41 ~~nAIs~--nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~----DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 41 KANAISV--NRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAA----DVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred ccceEee--cCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehh----hcccccchhhhheeecCCCcEE
Confidence 3455555 4566777777655 6788887654333333311111111111222 3778754 45677778999999
Q ss_pred EEECCC---CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1161 LWDLEK---EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1161 VWDl~t---~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
+||+.. ++ .+..+..|... |+++.+.+...++|++|+.||.|++||+|..+. ..++ .+....|+.|.|+|.
T Consensus 114 vWdlnk~~rnk-~l~~f~EH~Rs-~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~---~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 114 VWDLNKSIRNK-LLTVFNEHERS-ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTF---RSNSESIRDVKFSPG 187 (839)
T ss_pred EEecCccccch-hhhHhhhhccc-eeeeeeccCCccEEEecCCCceEEEEeeecccc-cccc---cccchhhhceeeccC
Confidence 999988 45 66778888777 999988888999999999999999999998873 3333 345689999999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc---eEEEEeccCCc
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPS 1314 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~---~l~~i~~~h~~ 1314 (1348)
.+.+|+++...|.+++||+|....+...+.+|.++|.|+.|||++.+|||||.|++|+|||.++. .+.++..
T Consensus 188 -~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---- 262 (839)
T KOG0269|consen 188 -YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---- 262 (839)
T ss_pred -CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee----
Confidence 79999999999999999999988899999999999999999999999999999999999997643 3334432
Q ss_pred ccccccCCeEEEEEeCCCC-EEEEEEC--CCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQV-LLAAGSA--DACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~-~Latgs~--Dg~I~IWd 1348 (1348)
..+|.++.|-|... .||+++. |..|+|||
T Consensus 263 -----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 263 -----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred -----cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 47899999999885 4677665 88999997
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2e-19 Score=202.86 Aligned_cols=250 Identities=19% Similarity=0.350 Sum_probs=194.4
Q ss_pred eEEEEEEee-----CCCCEEEEEeCCCeEEEEeccCCCCc-eeEE-------------eeeecccCCCCcccccceEEEE
Q 000697 1083 ISKLCLVNE-----LDVSLLLVASCNGNIRIWKDYDQKDK-QKLV-------------TAFSSIQGHKPGVRCSNVVVDW 1143 (1348)
Q Consensus 1083 ItsL~f~ns-----~d~~~L~tgs~DG~IrIWdl~~~~~~-~~lv-------------s~~~~l~~h~~~V~si~~~v~w 1143 (1348)
..|++|.+. ..|++++.|+.|..|.|||+.--+.- +.+. ..-..-.+|+..|.. +.|
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~----Ls~ 251 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA----LSW 251 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH----HHh
Confidence 357777643 24679999999999999998431100 0000 000112356666666 677
Q ss_pred ecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC
Q 000697 1144 QQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1144 s~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
+..-. .|++||.|.+|++||+.+++ +..++..| +..|.++.|++..+..+++|+.||+|.++|.|.....-..|+..
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCC-cceehhhc-CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence 66544 56666899999999999999 88888855 45599999999999999999999999999999655455555333
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
+.|-.++|.|. ....+++++.||+|+-+|+|..++++.++++|.++|++++++...+ ++++++.|+.|++|++.
T Consensus 330 ----g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 330 ----GEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ----cceEEEEecCC-CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 78999999998 7788999999999999999998899999999999999999998765 78999999999999987
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
+..-..... |.- ..+...|+++.|+- -+||.||..+.++|||
T Consensus 405 ~~~~~~v~~-~~~----~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 405 VDSPKSVKE-HSF----KLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred CCCCccccc-ccc----cccceeecccCCCcceEEEecCccceEEEee
Confidence 766555555 442 23457888888887 4678888888999997
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.7e-20 Score=191.83 Aligned_cols=259 Identities=15% Similarity=0.265 Sum_probs=199.8
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
.+..|..-|..+...-.|+.|||++.|++|+|+..+++ +.+.++.+|. ++|..++|.+..-|++|++++.||.|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceE
Confidence 45667778888888889999999999999999998764 5788899999 99999999766689999999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC--CCeEEEEECCCeEEEEECCCC-ceeeeee-cCCCCCCe
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKE-QQMVNPI-PSSSDCSI 1182 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~--~~~Ll~gg~Dg~IrVWDl~t~-~~~v~~l-~~~~~~~V 1182 (1348)
.||+-.. +..... .....|...|++ ++|-|. +-.|++++.||.|.|.+.+.. .-....+ ..|.- .|
T Consensus 83 IiWke~~--g~w~k~---~e~~~h~~SVNs----V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-Gv 152 (299)
T KOG1332|consen 83 IIWKEEN--GRWTKA---YEHAAHSASVNS----VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GV 152 (299)
T ss_pred EEEecCC--Cchhhh---hhhhhhccccee----ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-cc
Confidence 9999765 332222 346778899988 666554 557888899999999988765 2123333 34444 49
Q ss_pred EEEEEecCC--C-----------CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEE
Q 000697 1183 SALTASQVH--G-----------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSAS 1247 (1348)
Q Consensus 1183 tsL~~~s~d--g-----------~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs 1247 (1348)
+++++.+.. | ..|++|+.|..|+||+..... - ..-+.+.+|.++|+.++|.|. .....|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-w-~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-W-KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-h-hhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999554431 2 569999999999999998763 1 111246789999999999997 1235899999
Q ss_pred CCCcEEEEEcCCCCcc--eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCc
Q 000697 1248 QAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGE 1303 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~--v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~ 1303 (1348)
.||+|.||..+...++ ...++.....+..+.|+..|.+|+.++.|+.|.+|. .+|+
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9999999988743222 222333467899999999999999999999999998 4454
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.1e-19 Score=203.42 Aligned_cols=244 Identities=17% Similarity=0.294 Sum_probs=192.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..|-..|.+++.++||++||+|+.|..|.||+.++.+.++.|.+|. +.|.+++| ......|++++.|+.|++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~f--r~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAF--RKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc---cceeeeee--ecCccceeeeecCCceEEEeh
Confidence 3667889999999999999999999999999999999999999999 99999999 667788999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ...+ .++.+|...|.++ .-...+..+-+|+.|+++++|++..+. ...+.++.++ +.|+++. +
T Consensus 274 ~~----~s~v---etlyGHqd~v~~I----daL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~s-idcv~~I--n 337 (479)
T KOG0299|consen 274 DQ----LSYV---ETLYGHQDGVLGI----DALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGS-IDCVAFI--N 337 (479)
T ss_pred hH----hHHH---HHHhCCccceeee----chhcccceEEeccccceeEEEeccccc--eeeeeCCCCC-eeeEEEe--c
Confidence 54 2233 5678999998883 333445556666799999999996555 4445565555 8888666 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCC--------CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1261 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~--------~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-- 1261 (1348)
...|++|+.||.|.+|++-+.+++...-..|. ++..||++++..|. .+.+++|+.+|.|++|-+..+-
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEecCCccc
Confidence 67899999999999999998874433222221 12349999999998 9999999999999999998763
Q ss_pred -cceEEEecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEE
Q 000697 1262 -DAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFS 1299 (1348)
Q Consensus 1262 -~~v~t~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd 1299 (1348)
.++..+. -.+.|++++|+++|+.+++| +....+--|-
T Consensus 416 i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 416 INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 3444444 46789999999999965555 5554444443
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=178.45 Aligned_cols=250 Identities=19% Similarity=0.355 Sum_probs=195.8
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--cE---EEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEe-
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TL---LNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS- 1101 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~--~~---l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs- 1101 (1348)
-+..|.+.|.|.+|+|+|.+|++|+.|.+|++.-+... .. --.|..|. +.|..++|...+ .+.+|++++
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---gtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---GTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC---CceeeeEEecCCCcCceEEEecCC
Confidence 34556789999999999999999999999999865432 21 23477788 899999997433 344566554
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC----
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---- 1177 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~---- 1177 (1348)
.|..|.+-|... +. .++.+.+|++.|.. ...|+ +-.+++|+.|.+|++||++-.. ++.++...
T Consensus 161 gdc~iy~tdc~~--g~-----~~~a~sghtghila---lyswn--~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 161 GDCKIYITDCGR--GQ-----GFHALSGHTGHILA---LYSWN--GAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDG 227 (350)
T ss_pred CcceEEEeecCC--CC-----cceeecCCcccEEE---EEEec--CcEEEccCCCceEEEEeeeccc-eeeeccCcccCC
Confidence 344444445433 32 23568899988876 35675 6778888999999999999988 88877532
Q ss_pred --CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1178 --SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1178 --~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
..+.|.++ +..|.|+++++|-.|.+..+||+|.+. +++.+. .|...|.++.|+|. ..++++|+.|..|++-
T Consensus 228 glessavaav-~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~---phsadir~vrfsp~--a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 228 GLESSAVAAV-AVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFH---PHSADIRCVRFSPG--AHYLLTCSYDMKIKLT 300 (350)
T ss_pred CcccceeEEE-EECCCcceeeeccCCCceEEEEeeCCc-eeeeeC---CCccceeEEEeCCC--ceEEEEecccceEEEe
Confidence 22458888 678999999999999999999999998 566554 45699999999999 9999999999999999
Q ss_pred EcCCC---CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNH---KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~---~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|+... .-++.....|+..+-.+.|||..--+++.+.|+++.+|-+.+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 98732 134556667999999999999999999999999999997643
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=1.3e-19 Score=195.24 Aligned_cols=225 Identities=19% Similarity=0.270 Sum_probs=185.1
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC-----------CCceeEEeeeecccCCCCcccccce
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-----------KDKQKLVTAFSSIQGHKPGVRCSNV 1139 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-----------~~~~~lvs~~~~l~~h~~~V~si~~ 1139 (1348)
..+..|. +.+.+-+| ++||.+++||+.|..|+|.|++.- .+.....--++++.+|...|++
T Consensus 106 ~ylt~HK---~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~--- 177 (430)
T KOG0640|consen 106 KYLTSHK---SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND--- 177 (430)
T ss_pred EEEeecc---cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc---
Confidence 3456677 78999999 899999999999999999998620 1111111224788899999999
Q ss_pred EEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1140 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1140 ~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
+.|+|....|++|+.|++|++||..+.. ..+.++.- ...+|.++ .+.|.|.++++|.....+++||+.+-++.+..
T Consensus 178 -l~FHPre~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsi-SfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 178 -LDFHPRETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSI-SFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred -eeecchhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeE-eecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999999998765 33333211 12359999 77899999999999999999999998855544
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCC-CCeEEEEEeCCCCEEEEEeCCCcEE
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHR-GSLSALAVHRHAPIIASGSAKQLIK 1296 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~-~~VtsLa~spdg~~LasgS~Dg~I~ 1296 (1348)
. ...+|.+.|+++.+++. |+..++|+.||.|++||--.+ .++.++. +|. ..|.+..|..+|+++.+.+.|..|+
T Consensus 255 n-Pd~qht~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 255 N-PDDQHTGAITQVRYSST--GSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred C-cccccccceeEEEecCC--ccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 4 66789999999999999 999999999999999998877 7888775 464 4799999999999999999999999
Q ss_pred EEE-cCCceEEEEec
Q 000697 1297 VFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1297 Vwd-~~g~~l~~i~~ 1310 (1348)
+|. -+|..+....+
T Consensus 331 LWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTG 345 (430)
T ss_pred eeeecCCceEEEEec
Confidence 999 56888887766
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=211.09 Aligned_cols=276 Identities=13% Similarity=0.187 Sum_probs=214.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.|..+-+.++|.|+|.+|++++.||.|++|+..+. +.-.++..+. ..|.+++. ++++|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---~~v~~ia~----~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG---ELVSSIAC----YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC---ceeEEEee----cccceEEeeccceEEEeeC
Confidence 46678999999999999999999999999987655 4444444344 57777776 6679999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. +...-+ +...+.+++. ++++.+|..+++||+|-.|++-+..... ....+.+|... |.++ .++|.
T Consensus 84 ps--~~~~~i-----L~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~ap-Vl~l-~~~p~ 149 (933)
T KOG1274|consen 84 PS--GEEDTI-----LARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAP-VLQL-SYDPK 149 (933)
T ss_pred CC--CCccce-----eeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCc-eeee-eEcCC
Confidence 66 322211 2334455666 8899999999999999999999999888 78888888665 9999 67889
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-----CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-----QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-----~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+++|++.+.||.|++||+.++. +...+.... .....+..++|+|+ +..++....|+.|++|+...+ +....
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk--~g~la~~~~d~~Vkvy~r~~w-e~~f~ 225 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPK--GGTLAVPPVDNTVKVYSRKGW-ELQFK 225 (933)
T ss_pred CCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCC--CCeEEeeccCCeEEEEccCCc-eehee
Confidence 9999999999999999999876 333332211 11345778999999 777888888999999999887 56555
Q ss_pred Eec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1267 IDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1267 ~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
+.. +...++.++|+|+|+|||+++.||.|.|||.+.... |. ....|.+++|.|+...+-.-...|..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~-----~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE-----FKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc-----ccceeEEEecCCCCCeeEEEeecccc
Confidence 553 344599999999999999999999999999765221 22 23679999999998766544444433
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.1e-18 Score=187.38 Aligned_cols=292 Identities=14% Similarity=0.230 Sum_probs=216.6
Q ss_pred cccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCc----------EEEEe-----eCCCCCCCCeEEEEEEee
Q 000697 1028 ACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT----------LLNSF-----DNHDFPDKGISKLCLVNE 1091 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fsp-dg~~Latgs~dg~I~VWd~~t~~----------~l~~~-----~~h~~~~~~ItsL~f~ns 1091 (1348)
+++...|++.|+++.+.+ .|+++++|+.||.|.|||+++.. .+..+ .+|. -.|+++.|.|
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk---y~iss~~WyP- 111 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK---YAISSAIWYP- 111 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce---eeeeeeEEee-
Confidence 345667889999999988 56799999999999999998532 11111 2344 6899999975
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC---CeEEEEECCCeEEEEECCCCc
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS---GYLYASGEVSSIMLWDLEKEQ 1168 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~---~~Ll~gg~Dg~IrVWDl~t~~ 1168 (1348)
.|..++.+++-|.+++|||..+.+.-.. -...+.|.+ -+|+|-. ..+++|..+-.|++.|+.++.
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~--------F~me~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVD--------FKMEGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEE--------eecCceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 6778999999999999999966221111 123344444 4555532 345566688899999999999
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-----------CCCCCCCCeEEEEEecC
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-----------PHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-----------~~~~h~~~I~sl~~sp~ 1237 (1348)
+-.++.+|.+. |.++.|.+...-.|++|+.||.|++||+|....+...+. +...|.+.|.+++|..+
T Consensus 180 -~sH~LsGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 180 -FSHTLSGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -ceeeeccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 99999999887 999977666667888999999999999996533333332 23457889999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCcceEEEec--CCCCeEEEEE---eCCCCEEEEEeCCCcEEEEE-cCCceEEEEecc
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAV---HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1311 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~--h~~~VtsLa~---spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~ 1311 (1348)
+.++++++.|..+++|+..++...+..+-. |.. -+.+++ +-+...++---.++.+.+++ .+|..+..+..
T Consensus 258 --~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~- 333 (397)
T KOG4283|consen 258 --ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST- 333 (397)
T ss_pred --chhhhhccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec-
Confidence 999999999999999999887543333221 111 112222 22333444444568899999 78999999988
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|- ..|.|.++-|+-+.+.+|..|+.|..|.
T Consensus 334 h~-------k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 334 HL-------KRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cc-------ceeeEEeecCchhhhhccccCCcccccc
Confidence 53 6899999999999999999999998883
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-18 Score=201.71 Aligned_cols=291 Identities=18% Similarity=0.222 Sum_probs=225.0
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
++-.-...+|.+|+|+.+.+.||++-.+|+|.||++..+-.. ..+.++ .+..|.+++|. ++..|++.+.+|.|.
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~---e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWA---EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEc---cCCeEEeecCCceEE
Confidence 333344689999999999999999999999999999876433 334443 45799999993 788999999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCCCCCeEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALT 1186 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-~~~~~~~VtsL~ 1186 (1348)
-||+.+ .++.. .+....+.+++ ++.++.+..+++|++||.+..++...+. ..... -....+.|.++
T Consensus 94 EwDl~~--lk~~~-----~~d~~gg~IWs----iai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLsl- 160 (691)
T KOG2048|consen 94 EWDLHT--LKQKY-----NIDSNGGAIWS----IAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSL- 160 (691)
T ss_pred EEeccc--CceeE-----EecCCCcceeE----EEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEE-
Confidence 999977 44433 25556677887 8888999999999999988888887776 43322 23334569999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeE-eec--CC-CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STR--PH-TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1262 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~-~~~--~~-~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~ 1262 (1348)
.+++++..+++|+.||.|++||..++..... +++ .. ++...-|.++.+-. ...|++|...|+|++||...+ .
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr---d~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR---DSTIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee---cCcEEEecCCceEEEEcccCc-c
Confidence 7788999999999999999999998874331 111 11 11234567777764 468999999999999999998 8
Q ss_pred ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1263 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
.++.+..|.+.|.+++..+++..+.+++.|+.|.-|..++..-. +. .......|...|.+++..++ .|++|+.|.
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-wv--~~~~r~~h~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-WV--INSRRDLHAHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-ee--eeccccCCcccceeeeeecc--eEEecceee
Confidence 99999999999999999999999999999999998885543221 11 01122345578999999877 899999998
Q ss_pred eEEE
Q 000697 1343 CVSI 1346 (1348)
Q Consensus 1343 ~I~I 1346 (1348)
++.+
T Consensus 312 ~l~i 315 (691)
T KOG2048|consen 312 TLAI 315 (691)
T ss_pred EEEE
Confidence 8765
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=3.6e-19 Score=208.09 Aligned_cols=274 Identities=15% Similarity=0.264 Sum_probs=213.0
Q ss_pred EEEEEECCCcEEEEECCCC---cEEEE--e---------eC------CC--------------CCCCCeEEEEEEeeCCC
Q 000697 1049 IVVAADENERIKIWNYEED---TLLNS--F---------DN------HD--------------FPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1049 ~Latgs~dg~I~VWd~~t~---~~l~~--~---------~~------h~--------------~~~~~ItsL~f~ns~d~ 1094 (1348)
.++|++.||+||+||++.+ ...+. + .. |. .+.-++.+++. ++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--Sp~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--SPDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--CCCc
Confidence 5889999999999999853 11110 0 00 00 11247899999 8999
Q ss_pred CEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC---CCeEEEEECCCeEEEEECCCCceee
Q 000697 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1095 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~---~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
++|++|..-|+++||++..... . -.+..|...|.+ +.|+.. .+.|++++.|+.|.|||+..+-.++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~----~---~~~eAHesEilc----LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEY----T---CFMEAHESEILC----LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceecccCccCceEEEEehhhhh----h---hheecccceeEE----EeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9999999999999999965211 1 235789988887 666532 4567778999999999998876478
Q ss_pred eeecCCCCCCeEEEEEecCCC-CEEEEEeCCCeEEEEECCCCCeeeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1172 NPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~VrvwDlr~~~~~v~~~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
+++.+|+.+ |+++.+.-.++ ..+++++.|..|.+ +..........+. .+.-.+..+..+++.|. .+++++++.
T Consensus 541 qtld~HSss-ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQ 616 (1080)
T KOG1408|consen 541 QTLDGHSSS-ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQ 616 (1080)
T ss_pred hhhcccccc-eeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCC--cceEEEEec
Confidence 888888877 99996654332 56788888988754 3332111122221 11222467899999999 999999999
Q ss_pred CCcEEEEEcCCCCcceEEEec---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeE
Q 000697 1249 AGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVN 1324 (1348)
Q Consensus 1249 DG~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vt 1324 (1348)
|..|+|||+.++ +.++.|++ |++..-.+...|.|-|+|+...|+++.++| .+|+.+.++.+ |. ..|+
T Consensus 617 Drnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-Hs-------E~VT 687 (1080)
T KOG1408|consen 617 DRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HS-------EAVT 687 (1080)
T ss_pred ccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cc-------hhee
Confidence 999999999998 78888875 667899999999999999999999999999 78999999888 65 7899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1325 CLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1325 slafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.|.+|-+.|++.+.||.|.||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE
Confidence 999999999999999999999993
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=190.22 Aligned_cols=292 Identities=12% Similarity=0.166 Sum_probs=203.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCCeEEEE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGNIRIW 1109 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~IrIW 1109 (1348)
.|+..|++++|+.||+.|++++.|++|+||++++-+. -+.++..- +.+-.+.+.| .+|-.-+++ .-...++++|
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~F--apDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVF--APDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEE--CCCcceEEEEEccCCEEEEE
Confidence 4678999999999999999999999999999875311 11111111 1235688999 667665444 4455689999
Q ss_pred eccCCC-CceeEE-eeee---cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000697 1110 KDYDQK-DKQKLV-TAFS---SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1348)
Q Consensus 1110 dl~~~~-~~~~lv-s~~~---~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts 1184 (1348)
.+...+ |..... ..|. .-..|.-.+..++ .-..+.+|++++.|..|.+||++ ++ .+..+...... +.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG----iA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~--n~ 232 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG----IAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSS--NY 232 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEe----ecCCceEEEEecCCCcEEEEecC-Cc-eeeeecccccc--cc
Confidence 885421 221111 0011 1112333333322 22456788888999999999998 66 78888765544 33
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC-----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTP-----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~-----~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
.+..+|+|+++++++..-.|++|.+--. +...+.+ .+.||.+.|..++|+++ ...+++.|.||++++||+.-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCC--cceeEEEecCCcEEEeeccc
Confidence 3468999999999999999999987522 2234444 56799999999999999 99999999999999999862
Q ss_pred CC------cceEEEe----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEE
Q 000697 1260 HK------DAYLTID----AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTF 1328 (1348)
Q Consensus 1260 ~~------~~v~t~~----~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslaf 1328 (1348)
.. ..+++.. ...+.-..+..+|.|..||.... ..+++|. -+|+....++. .|.+.|++++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~-------~h~~~Is~is~ 381 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELED-------IHSTTISSISY 381 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHH-------hhcCceeeEEe
Confidence 11 2222221 12334458999999999988653 5799998 45666555544 34589999999
Q ss_pred eCCCCEEEEEECCCeEEEc
Q 000697 1329 HPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1329 spdg~~Latgs~Dg~I~IW 1347 (1348)
+++|++++|++ |..+++.
T Consensus 382 ~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred cCCCcEEeeec-ceeeeee
Confidence 99999999997 6777764
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=205.05 Aligned_cols=255 Identities=14% Similarity=0.189 Sum_probs=192.4
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
.+++|. ..|+++++ .+.|..|++||-|..|++||...-....+ .++.+. .....|++ +.|++.++.|
T Consensus 162 ~l~hgt---k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~---~fr~l~P~E~h~i~s----l~ys~Tg~~i 229 (641)
T KOG0772|consen 162 QLKHGT---KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMR---SFRQLQPCETHQINS----LQYSVTGDQI 229 (641)
T ss_pred eccCCc---eEEEEeee--cCCCceeeeccccceEEEEecccccccch---hhhccCcccccccce----eeecCCCCeE
Confidence 466677 78999999 88999999999999999999965222221 123333 23344555 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeec------------CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1151 YASGEVSSIMLWDLEKEQQMVNPIP------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v~~l~------------~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
++.+.....+|+|....+ .+...+ +|.. .++|.+|.+...+.|++++.||++|+||+...+....+
T Consensus 230 Lvvsg~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred EEEecCcceeEEccCCce-eeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 999999999999977655 333322 3433 48888677667789999999999999999976644444
Q ss_pred ec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--cceEEEecCCC--CeEEEEEeCCCCEEEEEeCC
Q 000697 1219 TR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRG--SLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1219 ~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--~~v~t~~~h~~--~VtsLa~spdg~~LasgS~D 1292 (1348)
++ ...+..-.++.++|+|+ |+.|++|+.||.|.+||.+... .....-.+|.. .|+|+.|+++|++|++-+.|
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred EeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 43 23345567999999999 9999999999999999986542 23344457876 89999999999999999999
Q ss_pred CcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1293 QLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1293 g~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
+++++||++ .+.+....+ -. ...+-+.++|+|+.++|+||.+ -|.+.+||
T Consensus 386 ~tLKvWDLrq~kkpL~~~tg-L~-----t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTG-LP-----TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CceeeeeccccccchhhhcC-CC-----ccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 999999975 345544443 22 2245678999999999999975 34566654
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1e-18 Score=189.81 Aligned_cols=260 Identities=13% Similarity=0.224 Sum_probs=203.1
Q ss_pred EEEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC
Q 000697 1049 IVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1348)
Q Consensus 1049 ~Latgs~dg~I~VWd~~t~------------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~ 1116 (1348)
.+++|++...|.=+++.-. ..+..++.|. +.|++++. ++.++++||.|-+|+|||+.....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~---~sitavAV----s~~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA---GSITALAV----SGPYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccc---cceeEEEe----cceeEeccCCCCcEEEEeccchhh
Confidence 3566777666666654311 2245677888 89999999 789999999999999999966222
Q ss_pred ceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1117 ~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
- ..+-.|.+.|++ +.|.+... .|++|++||.|.+|+...-. ++..+++|... |+.+ ..+|.+++
T Consensus 76 l-------g~ll~Hagsita----L~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~-Vt~l-siHPS~KL 141 (362)
T KOG0294|consen 76 L-------GILLSHAGSITA----LKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQ-VTDL-SIHPSGKL 141 (362)
T ss_pred h-------cceeccccceEE----EEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccccc-ccee-EecCCCce
Confidence 1 345678888888 77776654 89999999999999999998 99999999888 9999 77889999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
-++.+.|+.++.||+-.++.. ... ... ..-+.+.|+|. |.+++.+..+ .|-+|.+.+. .....+.. ...+
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a-~v~-~L~---~~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~-~~r~ 211 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVA-FVL-NLK---NKATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-SVFREIEN-PKRI 211 (362)
T ss_pred EEEEcCCceeeeehhhcCccc-eee-ccC---CcceeeEEcCC--CCEEEEEecc-EEEEEecccH-hHhhhhhc-cccc
Confidence 999999999999999887632 222 221 33445999998 8888888776 5899998865 34444432 2446
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEE--eCCCCEEEEEECCCeEEEcC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF--HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslaf--spdg~~Latgs~Dg~I~IWd 1348 (1348)
.++.|- ++..+++|+.|+.|++||.+ +..+..+.. |. .+|-++.+ .|++.+|+|+|+||.|+|||
T Consensus 212 l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~-------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 212 LCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-HE-------NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeeec-CCceEEEecCCceEEEeccCCCccceeeec-ch-------hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 676665 56789999999999999965 777777877 66 78888885 56788999999999999997
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-19 Score=203.81 Aligned_cols=240 Identities=17% Similarity=0.219 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
++.|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+++.| +.||.+|+|||.||.|.+|.+.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---cceeEEEE--eCCCcEEEecCCCccEEEEEEEee
Confidence 4789999999999999999999999999999999999999999 89999999 789999999999999999998431
Q ss_pred --CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1115 --KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1115 --~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
......+.++..+.+|.-+|+++ .+.+.+.+.++++++.|.++++||+..+. .+.++.. ...+.++ ..+|.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl--~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~f--p~si~av-~lDpae 229 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDL--QIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITF--PSSIKAV-ALDPAE 229 (476)
T ss_pred cccccCCCccceeeeccCcceeEEE--EecCCCccceEEEecCCceEEEEEeccce-eeEEEec--CCcceeE-EEcccc
Confidence 01111233456788999999883 23445567899999999999999999998 8777765 3348999 678899
Q ss_pred CEEEEEeCCCeEEEEECCCCC------------eeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPD------------MLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~------------~~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
..+++|+.+|.|.+.++.... .....++.+.||.+ .|+|++++-+ |..|++|+.||.|+|||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEecc
Confidence 999999999999998876432 11112234557777 9999999998 9999999999999999999
Q ss_pred CCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
+. ++++++....++|+.+.+.|-.+-...
T Consensus 308 S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SK-QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hH-HHHHHHhhhccccceeEeeccccceec
Confidence 87 788888877899999999776554443
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.1e-19 Score=187.66 Aligned_cols=252 Identities=16% Similarity=0.215 Sum_probs=189.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec--CCCeEEEEECCCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QSGYLYASGEVSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~--~~~~Ll~gg~Dg~ 1158 (1348)
+.|.++.. .-.|..|+|++.|++|+|+.+..+.. ..+. ..+.+|.++|.. ++|-. -|..|++++.||.
T Consensus 12 D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~-s~ll---~~L~Gh~GPVwq----v~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 12 DMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ-SKLL---AELTGHSGPVWK----VAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC-ceee---eEecCCCCCeeE----EeecccccCcEeeEeecCce
Confidence 56766666 55899999999999999999977333 2333 568999999999 88854 5777888899999
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec
Q 000697 1159 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236 (1348)
Q Consensus 1159 IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp 1236 (1348)
|.||.-+.++ ........|..+ |+++++-+. -|-.|++++.||.|.|.+.+... .-...+....|.-.|++++|.|
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~S-VNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSAS-VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred EEEEecCCCchhhhhhhhhhccc-ceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecC
Confidence 9999977764 123445566665 999954333 25688999999999999998762 1122223446789999999998
Q ss_pred CC-CC-----------CEEEEEECCCcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEE
Q 000697 1237 GL-DP-----------AKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHA----PIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1237 ~~-~g-----------~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg----~~LasgS~Dg~I~Vwd 1299 (1348)
.. .| +.|++|+.|..|+||+..+.. ..-.++.+|.+.|+.++|.|.- ..||++|.||+|.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 61 11 569999999999999998742 3345689999999999999963 3899999999999998
Q ss_pred cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+.+ ....+. ..+..-...+..++|+..|..|+.++.|+.|.+|.
T Consensus 240 ~~~e-~e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 240 KDEE-YEPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ecCc-cCcccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 5422 111110 00001236799999999999999999999999993
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.1e-18 Score=187.54 Aligned_cols=244 Identities=18% Similarity=0.265 Sum_probs=187.4
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC
Q 000697 1076 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155 (1348)
Q Consensus 1076 h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~ 1155 (1348)
.+++...|++|.| ++.++.|++++.||++++||+....-+ ..-.|..++.+ ++|. +...+++|+-
T Consensus 9 ~npP~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~----c~F~-d~~~~~~G~~ 73 (323)
T KOG1036|consen 9 ENPPEDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLD----CAFA-DESTIVTGGL 73 (323)
T ss_pred CCCChhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceee----eecc-CCceEEEecc
Confidence 3455689999999 577888888999999999999763111 22346777777 7776 4678999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1156 Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
||.|+.+|+.++. ...+..|.. +|.|| ......+.+++|+-|++|++||.|... .+-.+ .....|.++...
T Consensus 74 dg~vr~~Dln~~~--~~~igth~~-~i~ci-~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~----d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN--EDQIGTHDE-GIRCI-EYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF----DQGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCc--ceeeccCCC-ceEEE-EeeccCCeEEEcccCccEEEEeccccc-ccccc----ccCceEEEEecc
Confidence 9999999999987 445555555 49999 455677899999999999999999744 33222 223578888775
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-----ceEEEEe
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIR 1309 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-----~~l~~i~ 1309 (1348)
++.|++|+.|..|.+||+|+...+.+.-. .-+-.++|+++-|++.-++++|-||+|.+=.++. +....|+
T Consensus 145 ----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 145 ----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred ----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 77999999999999999998754442221 2345789999999999999999999998765432 3455677
Q ss_pred ccCCcccc--cccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1310 YHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1310 ~~h~~f~~--~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
. |..-.. .-..+|++++|||-...||||+.||.|.+||
T Consensus 221 C-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 221 C-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred e-eecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 7 653222 2335899999999999999999999999997
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=9e-18 Score=201.08 Aligned_cols=305 Identities=17% Similarity=0.242 Sum_probs=227.4
Q ss_pred CcccccccCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000697 1025 NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1348)
Q Consensus 1025 ~~i~~Wd~~~~----------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~ 1094 (1348)
+....|+.+.+ .+|+++.=+|--+.+|+|..+|+|.|+|++.++.+.+|+... ++|+++.| ..||
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~---g~VtslSF--rtDG 256 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW---GRVTSLSF--RTDG 256 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc---cceeEEEe--ccCC
Confidence 44555666543 789999999999999999999999999999999999999876 79999999 6677
Q ss_pred C-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eee
Q 000697 1095 S-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMV 1171 (1348)
Q Consensus 1095 ~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~--~~v 1171 (1348)
. .+++|+..|.+.+||++. .+... .....|.+.+.. ..|.+....+++++.|+.+++|=.+++. ..+
T Consensus 257 ~p~las~~~~G~m~~wDLe~--kkl~~----v~~nah~~sv~~----~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEK--KKLIN----VTRNAHYGSVTG----ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred CeeEEeccCCceEEEEEcCC--Ceeee----eeeccccCCccc----ceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 6 556666779999999965 22211 234567777777 6777888888899999998888555333 123
Q ss_pred eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCC----------------------------------------
Q 000697 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT---------------------------------------- 1211 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~---------------------------------------- 1211 (1348)
...+.++..+-.++.+....|..+.+++.|++.+.|++..
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 3344444555777767666777777777777777666531
Q ss_pred -------------------------CCeeeEeecC--CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1212 -------------------------PDMLVCSTRP--HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1212 -------------------------~~~~v~~~~~--~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
...-...++. ++.-...+++++.++. |++.+.|+..|.|-+|++.++ -..
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C--GNF~~IG~S~G~Id~fNmQSG-i~r 483 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC--GNFVFIGYSKGTIDRFNMQSG-IHR 483 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc--CceEEEeccCCeEEEEEcccC-eee
Confidence 1100000000 0001246889999998 999999999999999999988 666
Q ss_pred EEE---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce-EEE---------EeccCCc----------c------
Q 000697 1265 LTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGT---------IRYHHPS----------F------ 1315 (1348)
Q Consensus 1265 ~t~---~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~-l~~---------i~~~h~~----------f------ 1315 (1348)
.++ ..|.++|++++...-++.+++++.+|.+++||..++. +.. +.+ |.. |
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~-hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVY-HRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeee-eehhhhhhhhcCceeEEEEE
Confidence 677 5899999999999999999999999999999965433 111 222 110 0
Q ss_pred ---------cccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1316 ---------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1316 ---------~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+|.+.|++++|||||++|++++.|++|++||
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 225889999999999999999999999999997
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=3.5e-17 Score=188.10 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=190.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L-~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
+..+++++.|+.|++||..+++.+..+..+. .+.++.| ++++..+ ++++.++.|++||..+ ++. . .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~--~~~--~---~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITL--SKDGKLLYVCASDSDTIQVIDLAT--GEV--I---G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEE--CCCCCEEEEEECCCCeEEEEECCC--CcE--E---E
Confidence 3578899999999999999999988888665 4678899 7888876 5667889999999865 322 2 1
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-e
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-S 1203 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-~ 1203 (1348)
.+..+.. +.. ++|+++++.+++++ .++.|++||+++.+ .+..+..+. .+.++ .++++++.++++..++ .
T Consensus 68 ~~~~~~~-~~~----~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~-~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 68 TLPSGPD-PEL----FALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGM-AVSPDGKIVVNTSETTNM 138 (300)
T ss_pred eccCCCC-ccE----EEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceE-EECCCCCEEEEEecCCCe
Confidence 2222222 223 78999999887764 68999999999887 777765432 25677 6788999999988775 5
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE-EEECCCcEEEEEcCCCCcceEEEecCC-----C--CeE
Q 000697 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAYLTIDAHR-----G--SLS 1275 (1348)
Q Consensus 1204 VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~La-Sgs~DG~I~IWDlr~~~~~v~t~~~h~-----~--~Vt 1275 (1348)
+.+||.++.+. ...... ...+.++.|+|+ +..++ ++..+|.|++||++++ +.+..+..+. . ...
T Consensus 139 ~~~~d~~~~~~-~~~~~~----~~~~~~~~~s~d--g~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 139 AHFIDTKTYEI-VDNVLV----DQRPRFAEFTAD--GKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred EEEEeCCCCeE-EEEEEc----CCCccEEEECCC--CCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCcc
Confidence 67889987763 322211 134678999999 77775 4456899999999987 5655554321 1 234
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE-CCCeEEEcC
Q 000697 1276 ALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIHS 1348 (1348)
Q Consensus 1276 sLa~spdg~~Las-gS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs-~Dg~I~IWd 1348 (1348)
.++|+|+++++++ .+.++.|.+||.. ++.+..+. +. ..+.+++|+|++.+|++++ .+|.|.+||
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC-------CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 6889999997544 4556789999964 44444433 22 4688999999999998864 589999997
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.7e-18 Score=195.92 Aligned_cols=290 Identities=18% Similarity=0.261 Sum_probs=213.2
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1034 FEKGTKTALLQPFSP--IVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~--~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
+..+|++++|||..+ ++|+|+..|.|-+||+.+. ..+..|..|. .+|++|.|.+ .+...+++.|.||+|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---~~Vs~l~F~P-~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---GPVSGLKFSP-ANTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---ccccceEecC-CChhheeeeccCceee
Confidence 457899999999776 8889999999999999522 3455677777 8999999953 4667899999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
.-|++. ...+.+ -.+........ .++|+.+...++.++.-|...+||.++.......+..|.. .|++|++
T Consensus 261 ~~D~~~--~i~e~v---~s~~~d~~~fs----~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~ 330 (498)
T KOG4328|consen 261 LQDFEG--NISEEV---LSLDTDNIWFS----SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVAL 330 (498)
T ss_pred eeeecc--hhhHHH---hhcCccceeee----eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeec
Confidence 999966 222222 11111112222 3788888899999988889999999987723555666666 5999977
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC---CCCcc
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDA 1263 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~-~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr---~~~~~ 1263 (1348)
.+....+|++++.|++++|||+|.-..... .+ ....|...|.+..|+|. +|. |++.+.|..|+|||.. ....+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs-~gt-l~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPS-GGT-LLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCC-CCc-eEeeccCCceEEeecccccccCCc
Confidence 777888999999999999999995432111 12 22367899999999999 455 9999999999999984 22255
Q ss_pred eEEEecCCC------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce-EEEEeccCCcccccccCCeEE-EEEeCCCCEE
Q 000697 1264 YLTIDAHRG------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNC-LTFHPYQVLL 1335 (1348)
Q Consensus 1264 v~t~~~h~~------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~-l~~i~~~h~~f~~~~~~~Vts-lafspdg~~L 1335 (1348)
..++. |.. ......|+|+..++++|-.-..|-|+|-+|+. +..+.. . ....|.+ ..|||.+..+
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P------~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-P------ESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-c------cccccccceeecccccce
Confidence 55555 322 23456899999999999999999999966655 555433 1 1234444 4799999866
Q ss_pred EEEEC-CCeEEEcC
Q 000697 1336 AAGSA-DACVSIHS 1348 (1348)
Q Consensus 1336 atgs~-Dg~I~IWd 1348 (1348)
++|+. .|.|.||.
T Consensus 480 ~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 480 AAGGNSSGKIYVFT 493 (498)
T ss_pred eccCCccceEEEEe
Confidence 66554 78999883
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=1.7e-18 Score=213.91 Aligned_cols=247 Identities=15% Similarity=0.253 Sum_probs=201.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------C-----------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------D-----------TLLNSFDNHDFPDKGISKLCLVNELD 1093 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-------~-----------~~l~~~~~h~~~~~~ItsL~f~ns~d 1093 (1348)
..|.+.|+|+.|+|||.+||+|++|+.|.||+... | +.+..+.+|. ..|..++| +|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---~DV~Dv~W--sp~ 140 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---SDVLDVNW--SPD 140 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---Cccceecc--CCC
Confidence 35678999999999999999999999999998872 1 3567788999 89999999 789
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000697 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1348)
Q Consensus 1094 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~ 1173 (1348)
+.+|++++.|++|.||+..+ .+.+ +.+.+|...|.+ +.|.|-|.++++-++|++|+||++..-. +.+.
T Consensus 141 ~~~lvS~s~DnsViiwn~~t----F~~~---~vl~~H~s~VKG----vs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~ 208 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKT----FELL---KVLRGHQSLVKG----VSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKS 208 (942)
T ss_pred ccEEEEecccceEEEEcccc----ceee---eeeecccccccc----eEECCccCeeeeecCCceEEEEEcccce-eeEe
Confidence 99999999999999999866 2333 568999999999 9999999999999999999999987766 6666
Q ss_pred ecCCCC-----CCeEEEEEecCCCCEEEEEeC----CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC------C
Q 000697 1174 IPSSSD-----CSISALTASQVHGGQLAAGFV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------L 1238 (1348)
Q Consensus 1174 l~~~~~-----~~VtsL~~~s~dg~~LvsGs~----DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~------~ 1238 (1348)
+..+.+ ..+..+ .|+|+|++|++... -.++.|.+..+.+. -. .+-||.+++.++.|+|. .
T Consensus 209 It~pf~~~~~~T~f~Rl-SWSPDG~~las~nA~n~~~~~~~IieR~tWk~-~~---~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRL-SWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-DK---DLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eccchhhCCCcceeeec-ccCCCcCeecchhhccCCcceeEEEecCCcee-ee---eeecCCCceEEEEeChHHhccccc
Confidence 665433 235667 68999999998643 34688888766552 22 34488899999999986 0
Q ss_pred -----CCC----EEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1239 -----DPA----KIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1239 -----~g~----~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
..+ .+++|+.|+.|.||..... +++..+. -....|..++|+|||..|.++|.||+|.+..++
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 121 7899999999999999766 4544333 346789999999999999999999999999975
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.2e-20 Score=218.67 Aligned_cols=257 Identities=18% Similarity=0.363 Sum_probs=216.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
|...+++.+..+-.++|||.+. +-.|. ..+.++.. -..+..+++|+.|..+.+|.+.. ...+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hs---aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~k----p~~i--- 63 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE------FVAHS---AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGK----PNAI--- 63 (825)
T ss_pred Ccccccceeeeeeccccccchh------hhhhh---hhhceeee--eccceeeccCCCceeeccccccC----Cchh---
Confidence 4455666677777888888752 44455 56777776 46788999999999999999843 3222
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeE
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1204 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~V 1204 (1348)
..+.+|..+|.+ +.|+.....|++|+.+|+|++||++..+ .++++.+|... +.++ .|+|-+.+++.|+.|+.+
T Consensus 64 ~S~~~hespIeS----l~f~~~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~-~~sv-~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 64 TSLTGHESPIES----LTFDTSERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLN-ITSV-DFHPYGEFFASGSTDTDL 136 (825)
T ss_pred heeeccCCccee----eecCcchhhhcccccCCceeeeehhhhh-hhhhhhccccC-ccee-eeccceEEeccccccccc
Confidence 347899999999 8999999999999999999999999999 89999998876 8999 588999999999999999
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1205 rvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
++||.|... +...++ +|...|..+.|+|+ |+++++|+.|..++|||...+ +....|..|.+.+.++.|||..-
T Consensus 137 ~iwD~Rk~G-c~~~~~---s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 137 KIWDIRKKG-CSHTYK---SHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred eehhhhccC-ceeeec---CCcceeEEEeecCC--CceeeccCCcceeeeeccccc-ccccccccccccccccccCchhh
Confidence 999999766 455443 57788999999999 999999999999999999988 89999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1285 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1285 ~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
++++||.|++|++||++ -+.+...+. . ...|.+.+|+|+++.+++|..+
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~-~-------~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKP-E-------TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCC-c-------cCCceeeeecCCceeeecCchh
Confidence 99999999999999976 555655554 2 3789999999999999888654
No 126
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=193.58 Aligned_cols=239 Identities=15% Similarity=0.294 Sum_probs=199.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
..|+++..+ +....++||+.|..+.++|... + ++. ..+.||...|.. +.++++...+++++.|..|+
T Consensus 220 pgi~ald~~--~s~~~ilTGG~d~~av~~d~~s--~--q~l---~~~~Gh~kki~~----v~~~~~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 220 PGITALDII--PSSSKILTGGEDKTAVLFDKPS--N--QIL---ATLKGHTKKITS----VKFHKDLDTVITASADEIIR 286 (506)
T ss_pred CCeeEEeec--CCCCcceecCCCCceEEEecch--h--hhh---hhccCcceEEEE----EEeccchhheeecCCcceEE
Confidence 357777773 4478999999999999999854 2 222 468999999888 89999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
||...... +......|.. +|+.+ ...+.|.+|++++.||+..+.|++++....... .....-.+++.+|+|+ |
T Consensus 287 vws~~~~s-~~~~~~~h~~-~V~~l-s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--~~~s~v~~ts~~fHpD--g 359 (506)
T KOG0289|consen 287 VWSVPLSS-EPTSSRPHEE-PVTGL-SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--DETSDVEYTSAAFHPD--G 359 (506)
T ss_pred eecccccc-Cccccccccc-cceee-eeccCCcEEEEecCCceEEEEEccCCcEEEEEe--eccccceeEEeeEcCC--c
Confidence 99988777 6666666655 59999 678999999999999999999999998554433 2123356999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccc
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~ 1319 (1348)
.+|.+|+.||.|+|||+.+. ..+..|.+|.++|..++|+.+|-+||++++|+.|++||++. +...++.. . .
T Consensus 360 Lifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-~------~ 431 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-D------E 431 (506)
T ss_pred eEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-c------c
Confidence 99999999999999999998 68899999999999999999999999999999999999653 44445544 2 2
Q ss_pred cCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...|.++.|.+.|.+|+.++.|=+|+++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEE
Confidence 3479999999999999999888777665
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3e-18 Score=194.63 Aligned_cols=267 Identities=19% Similarity=0.281 Sum_probs=199.4
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
+..++.+||+.+|....++++... ..-.++... .+.+++++.. -..|.+|.+..... .+ ...-..+.
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~--a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~---~~----q~~v~Pg~ 83 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYL--AQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQ---VV----QYIVLPGP 83 (476)
T ss_pred CCcceeEEecCCCceeEEecCccc--ccchhhhhh---chhheeeecccCccccccccCchhh---hh----hhcccccc
Confidence 345699999999999999987731 122222322 3356666653 45799999854111 11 01112334
Q ss_pred ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC-
Q 000697 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP- 1212 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~- 1212 (1348)
+.+ +.-++.|.++++|+-.|.|++|.+.++. .+..+.+|-.. |+|+ .++.+|.+|++|+.||.|.+|++-.-
T Consensus 84 v~a----l~s~n~G~~l~ag~i~g~lYlWelssG~-LL~v~~aHYQ~-ITcL-~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 84 VHA----LASSNLGYFLLAGTISGNLYLWELSSGI-LLNVLSAHYQS-ITCL-KFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred eee----eecCCCceEEEeecccCcEEEEEecccc-HHHHHHhhccc-eeEE-EEeCCCcEEEecCCCccEEEEEEEeec
Confidence 444 6667777777777799999999999999 99999888776 9999 67889999999999999999987521
Q ss_pred ----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1213 ----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1213 ----~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
......+..+.+|.-+|+.+...+++....++|+|.|.++++||+..+ ..+.++. ....+.+++++|-++.+.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe-cCCcceeEEEcccccEEEe
Confidence 112222234557889999999988744578999999999999999988 6777766 4668999999999999999
Q ss_pred EeCCCcEEEEEcC---C--------------ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GSAKQLIKVFSLE---G--------------EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~---g--------------~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.+|.|.+.++. | ..+..+.+ |. ....|+|++.+-||.+|++|+.||.|.|||
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~-----~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HE-----NESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeecc-cc-----CCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 9999999988743 1 12223333 22 124999999999999999999999999997
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.8e-17 Score=179.59 Aligned_cols=275 Identities=12% Similarity=0.238 Sum_probs=201.3
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
..++..|..-|.++.|.+.|+.+|+++.|++|+|||.++. .+...++.|. +.|..+.|....-|+.+++++.|
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~---~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD---GSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC---CcEEEEEecCccccceEEEEecC
Confidence 3455667778999999999999999999999999996533 5667789999 99999999866789999999999
Q ss_pred CeEEEEeccCCCCce--eEEeeeecccCCCCcccccceEEEEecC--CCeEEEEECCCeEEEEECCCCc-----eeeeee
Q 000697 1104 GNIRIWKDYDQKDKQ--KLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQ-----QMVNPI 1174 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~--~lvs~~~~l~~h~~~V~si~~~v~ws~~--~~~Ll~gg~Dg~IrVWDl~t~~-----~~v~~l 1174 (1348)
++++||.-.....+. ..-....++.+....|.. +.|.|. |-.+++++.||.+|||+.-... +...++
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D----V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD----VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeE----EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 999999863211111 111112345566667777 777764 5567778999999999865432 022222
Q ss_pred c------CCCCCCeEEEEEecC--CCCEEEEEeCC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC--C
Q 000697 1175 P------SSSDCSISALTASQV--HGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL--D 1239 (1348)
Q Consensus 1175 ~------~~~~~~VtsL~~~s~--dg~~LvsGs~D-----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~--~ 1239 (1348)
. +....+-.|+.|.+. ...+|+.|+.+ +.++||................+|..+|+.++|.|.. .
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 2 223334677754422 24678888876 5899998876553334444666899999999999982 2
Q ss_pred CCEEEEEECCCcEEEEEcCCCC-------------------cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHK-------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~-------------------~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
...|++++.|| |+||.++... +.+..+..|++.|..+.|+-.|.+|++.+.||.|++|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 35799999999 9999987311 345567789999999999999999999999999999983
Q ss_pred C----CceEEEEec
Q 000697 1301 E----GEQLGTIRY 1310 (1348)
Q Consensus 1301 ~----g~~l~~i~~ 1310 (1348)
+ -++...++.
T Consensus 318 ny~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 318 NYNNLWKCTSVLKA 331 (361)
T ss_pred hhhhhheeeeEEec
Confidence 2 345555554
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=3.1e-17 Score=186.83 Aligned_cols=275 Identities=18% Similarity=0.286 Sum_probs=207.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE---EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN---SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~---~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
..|....|||.++-|++....|.+..|+++.+...+ .|+.++ ..-|.|++| .++| -++||.++|.|.||+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTF--LENG-DVITGDSGGNILIWSKG 275 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc--ceEEEEEEE--cCCC-CEEeecCCceEEEEeCC
Confidence 457788999999877666669999999999885554 355554 267999999 4454 57899999999999984
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc----------eeeeee--------
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----------QMVNPI-------- 1174 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~----------~~v~~l-------- 1174 (1348)
. .+.. +....|.+.|.+ ++.- .++.|++|+.|+.|..||-.-.+ ..++++
T Consensus 276 ~----~~~~---k~~~aH~ggv~~----L~~l-r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 276 T----NRIS---KQVHAHDGGVFS----LCML-RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred C----ceEE---eEeeecCCceEE----EEEe-cCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 3 3333 233489999988 3333 46778889999999999832111 011111
Q ss_pred ---------------------cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000697 1175 ---------------------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1175 ---------------------~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
.+|.+ ....+ ...+..+.+++++.|+.+++|+ ..+ ..-.... ..+..++.
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgl-a~hps~~q~~T~gqdk~v~lW~--~~k-~~wt~~~----~d~~~~~~ 414 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGD-ELWGL-ATHPSKNQLLTCGQDKHVRLWN--DHK-LEWTKII----EDPAECAD 414 (626)
T ss_pred EeeccceEEEeeecCCceEEEEeccc-ceeeE-EcCCChhheeeccCcceEEEcc--CCc-eeEEEEe----cCceeEee
Confidence 12222 24556 4556778999999999999999 333 3222212 26899999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEecc
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYH 1311 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~ 1311 (1348)
|+|. | .++.|+..|...+.|..+. ..+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.+ +|........
T Consensus 415 fhps--g-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k- 488 (626)
T KOG2106|consen 415 FHPS--G-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK- 488 (626)
T ss_pred ccCc--c-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-
Confidence 9999 7 9999999999999999985 55554444 889999999999999999999999999984 4666666655
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+. .++|+.+.|++|+++|.+.+.|-.|..|.
T Consensus 489 ~~------gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 489 CS------GSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ec------CceeEEeeecCCCceEEeccCceEEEEEc
Confidence 43 28999999999999999999999999883
No 130
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=209.66 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=175.0
Q ss_pred EEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccC------CCCcccccceEEE
Q 000697 1070 LNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVVVD 1142 (1348)
Q Consensus 1070 l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~------h~~~V~si~~~v~ 1142 (1348)
.+.++ .|. +.|.++.| ++||+|||+||.||.|+||.+...+. ..+. ...... ....+..... ..
T Consensus 259 ~Qe~~~ah~---gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~-~~~~--~~~~~~~~~~~~~~s~~~p~~s-~~ 329 (712)
T KOG0283|consen 259 VQEISNAHK---GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESER-MRVA--EGDSSCMYFEYNANSQIEPSTS-SE 329 (712)
T ss_pred eeccccccC---CcEEEEEe--CCCCceeeecCCCceEEEEEEeccch-hccc--ccccchhhhhhhhccccCcccc-cc
Confidence 34455 777 89999999 89999999999999999999855111 0000 000000 0000000000 00
Q ss_pred EecCCCeEE--EEECCCeEEEEECC----CCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000697 1143 WQQQSGYLY--ASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1216 (1348)
Q Consensus 1143 ws~~~~~Ll--~gg~Dg~IrVWDl~----t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v 1216 (1348)
=...+.... .+.....+. .+.. .++ ++..+.+|... |..| .|+ ..++|++++.|.+||+|++...+ ++
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~-~p~~~f~f~ek-P~~ef~GHt~D-ILDl-SWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL 403 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVL-LPLKAFVFSEK-PFCEFKGHTAD-ILDL-SWS-KNNFLLSSSMDKTVRLWHPGRKE-CL 403 (712)
T ss_pred ccccccccccccccCCcccc-CCCcccccccc-chhhhhccchh-heec-ccc-cCCeeEeccccccEEeecCCCcc-ee
Confidence 000000000 111111222 2211 234 78888999887 9999 554 56799999999999999999877 67
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 000697 1217 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1296 (1348)
Q Consensus 1217 ~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~ 1296 (1348)
+.+ .|...|+||+|+|. +.++|++|+-||.|+||++... .+..+..-..-|++++|.|+|+..+.|+.+|.++
T Consensus 404 ~~F----~HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 404 KVF----SHNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred eEE----ecCCeeEEEEeccc-CCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 766 57799999999998 8999999999999999999965 4555555567899999999999999999999999
Q ss_pred EEEcCCceEEE---EeccCCcccccccCCeEEEEEeCCCC-EEEEEECCCeEEEcC
Q 000697 1297 VFSLEGEQLGT---IRYHHPSFMAQKIGSVNCLTFHPYQV-LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1297 Vwd~~g~~l~~---i~~~h~~f~~~~~~~Vtslafspdg~-~Latgs~Dg~I~IWd 1348 (1348)
+|+..+..+.. +.- +.+-...+ ..|+++.|.|... .+++.+.|..|+|||
T Consensus 477 fY~t~~lk~~~~~~I~~-~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRL-HNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred EEEccCCeEEEeeeEee-ccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 99988765543 222 22222223 3899999998664 355566899999997
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.5e-18 Score=203.05 Aligned_cols=247 Identities=16% Similarity=0.241 Sum_probs=208.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.++.+++.+|+|++||+|+.-|+++||++.+.+.+..++.|+ ..|.|+.|.+.. ..++|++++.|..|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 689999999999999999999999999999999999999999 999999996432 346899999999999999954
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeecCC----CCCCeEEEEEe
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIPSS----SDCSISALTAS 1188 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~--~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~----~~~~VtsL~~~ 1188 (1348)
+..++ +++.+|...|++ +.|--.+ ..++++|.|+.|.+=-..+.. -...+..| ....+..| ..
T Consensus 536 --ny~l~---qtld~HSssITs----vKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t~t~~ktTlYDm-~V 604 (1080)
T KOG1408|consen 536 --NYDLV---QTLDGHSSSITS----VKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHTQTLSKTTLYDM-AV 604 (1080)
T ss_pred --ccchh---hhhcccccceeE----EEEeecCCceEEEeccCchhhheehhcccc-CceeccccccccccceEEEe-ee
Confidence 33344 678999999998 6665555 578888999877653333221 12222222 12237778 56
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
.+..+++++++.|..|+|||+.+++ .++.++...+|.+....+...|. |.++++.+.|.++.++|..++ +++.+..
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPS--giY~atScsdktl~~~Df~sg-EcvA~m~ 680 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPS--GIYLATSCSDKTLCFVDFVSG-ECVAQMT 680 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCC--ccEEEEeecCCceEEEEeccc-hhhhhhc
Confidence 7888999999999999999999998 78888888899999999999999 999999999999999999998 8999999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+|...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999964
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.1e-19 Score=220.96 Aligned_cols=287 Identities=20% Similarity=0.287 Sum_probs=218.3
Q ss_pred CeEEEEEcCCCC-EEEEEE----------CCCcEEEEECC--CC----cEEEEeeCCCCCCCCeEEEEEEeeCCCC----
Q 000697 1037 GTKTALLQPFSP-IVVAAD----------ENERIKIWNYE--ED----TLLNSFDNHDFPDKGISKLCLVNELDVS---- 1095 (1348)
Q Consensus 1037 ~I~sl~fspdg~-~Latgs----------~dg~I~VWd~~--t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~---- 1095 (1348)
+.-.++|+|++. ++++|. .+.++.||.+. +. +.+..+... .+...++|. ..+.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~--~~g~~~~G 81 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWG--SYGSHSHG 81 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeec--ccCCCccc
Confidence 345678999887 666552 35566777543 22 233334333 478899994 4333
Q ss_pred EEEEEeCCCeEEEEeccCC--CCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeee
Q 000697 1096 LLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
+|+.|..||.|.+||.... .+...++ .....|.+.|.. ++|++..+ .+++|++||.|.|||+...+ .-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~g----LDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLG----LDFNPFQGNLLASGADDGEILIWDLNKPE-TPF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHH---hhhcccCCceee----eeccccCCceeeccCCCCcEEEeccCCcC-CCC
Confidence 5899999999999998652 3333333 567789999998 99999888 56666789999999998865 333
Q ss_pred eec-CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC-
Q 000697 1173 PIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG- 1250 (1348)
Q Consensus 1173 ~l~-~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG- 1250 (1348)
... ......|.+++|.....++|++|+.+|.+.|||+|..+.++..- .+ +....+..+.|+|+ +...+++++.|.
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~-~~~~~~S~l~WhP~-~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DT-PGRMHCSVLAWHPD-HATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cC-CCccceeeeeeCCC-CceeeeeecCCCC
Confidence 332 11233499998777778899999999999999999987544332 22 22245889999999 777888888764
Q ss_pred --cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEE
Q 000697 1251 --DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1251 --~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
.|.+||+|....+++++++|...|.++.|++.+ .++++++.|+.|.+|+ -+|+.+..+.. . ...+..+
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-------~nW~fdv 302 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-------GNWCFDV 302 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-------Ccceeee
Confidence 499999998878999999999999999999976 7999999999999999 56888888765 3 3789999
Q ss_pred EEeCCCC-EEEEEECCCeEEEcC
Q 000697 1327 TFHPYQV-LLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~-~Latgs~Dg~I~IWd 1348 (1348)
.|+|... .+++++-||.|.||+
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eecCCCcchhhhheeccceeeee
Confidence 9999886 778888899999985
No 133
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=4.9e-18 Score=200.07 Aligned_cols=242 Identities=17% Similarity=0.277 Sum_probs=197.0
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe-cC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQ 1146 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~ 1146 (1348)
+..+.+.+|. ..|..+++ .++..++++|.||++++|+-.. +... ....+.+|.+.+... ++|- .+
T Consensus 5 ~ls~~l~gH~---~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~--~~~l---~~~~~~~~~g~i~~~---i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEGHK---SDVRAVAV---TDGVCIISGSRDGTVKVWAKKG--KQYL---ETHAFEGPKGFIANS---ICYAESD 70 (745)
T ss_pred eeEEEeccCc---cchheeEe---cCCeEEeecCCCCceeeeeccC--cccc---cceecccCcceeecc---ceecccc
Confidence 4556788999 78888887 3667899999999999999744 1111 112355666665552 3443 46
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
++.+++|+.|++|.+|...... +...+.+|... |.|+.. ..++. +++|+-|.++++|-...-. . ...+|.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~-P~~~LkgH~sn-VC~ls~-~~~~~-~iSgSWD~TakvW~~~~l~---~---~l~gH~ 140 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAE-PLYTLKGHKSN-VCSLSI-GEDGT-LISGSWDSTAKVWRIGELV---Y---SLQGHT 140 (745)
T ss_pred CcceEeecccceEEEEecCCCC-chhhhhccccc-eeeeec-CCcCc-eEecccccceEEecchhhh---c---ccCCcc
Confidence 6789999999999999999999 99999999887 999943 33444 9999999999999765332 2 355888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~ 1306 (1348)
..|.++..-|. + .++|||.|.+|++|.-. +.+++|.+|.+.|+++++-+++ .|++++.||.|++|+++|+.+.
T Consensus 141 asVWAv~~l~e--~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 141 ASVWAVASLPE--N-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred hheeeeeecCC--C-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceee
Confidence 99999999987 4 99999999999999763 7899999999999999999764 5778889999999999999999
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+ |+ +.|.+++...++..++++++|++++||+
T Consensus 214 ~~~g-ht-------n~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 214 EMHG-HT-------NFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred eeec-cc-------eEEEEEEecCCCCeEEEecCCceEEEee
Confidence 9988 76 6799999777888999999999999996
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.3e-17 Score=176.69 Aligned_cols=279 Identities=15% Similarity=0.241 Sum_probs=205.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
-.|+.|++-|.+||+|+.||.|.|||+.+...-+.+.+|. .+|++++| ++||..|+|+|.|..|++||+.. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~--gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLK--GS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEe--cCCCCEeeeecCCceeEEEeccC--CC
Confidence 7899999999999999999999999999988888899999 89999999 89999999999999999999976 33
Q ss_pred eeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEE---EEecCCCC
Q 000697 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISAL---TASQVHGG 1193 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL---~~~s~dg~ 1193 (1348)
... .+ ....+|.. +.|+|.....++++ .+..-.+-++.... ...++...+...... .++.+.|+
T Consensus 99 ~l~-----ri-rf~spv~~----~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 99 PLK-----RI-RFDSPVWG----AQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred cee-----EE-EccCccce----eeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC
Confidence 211 11 13456666 78888766655554 33333444444322 222222211111111 14788999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC--------cceE
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------DAYL 1265 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~--------~~v~ 1265 (1348)
++++|...|.+.+||..+.+ ++..++... ...|..+.++.. |+.|+.-+.|..|+.|+++.-. ++.+
T Consensus 167 yIitGtsKGkllv~~a~t~e-~vas~rits--~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLE-CVASFRITS--VQAIKQIIVSRK--GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEEecCcceEEEEecchhe-eeeeeeech--heeeeEEEEecc--CcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 99999999999999999887 444443221 267889999988 9999999999999999987321 1111
Q ss_pred EEec--CCCCeEEEEEeCCCCEEEEEeC-CCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1266 TIDA--HRGSLSALAVHRHAPIIASGSA-KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1266 t~~~--h~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
.++. .+..-.+++|+.+|.++++|+. ...++||. ..|..++.+.+ .. ......+.|||-...+++- ..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-~k------gE~l~DV~whp~rp~i~si-~s 313 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-TK------GEELLDVNWHPVRPIIASI-AS 313 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-Cc------hhheeecccccceeeeeec-cC
Confidence 1110 1223467899999999888864 45699999 56888888877 33 2567889999999999888 68
Q ss_pred CeEEEcC
Q 000697 1342 ACVSIHS 1348 (1348)
Q Consensus 1342 g~I~IWd 1348 (1348)
|.|+||.
T Consensus 314 g~v~iw~ 320 (405)
T KOG1273|consen 314 GVVYIWA 320 (405)
T ss_pred CceEEEE
Confidence 8999994
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=2.8e-17 Score=193.60 Aligned_cols=299 Identities=15% Similarity=0.227 Sum_probs=220.2
Q ss_pred CCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCc---------------------EEEEe----------eCCCC
Q 000697 1033 RFEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDT---------------------LLNSF----------DNHDF 1078 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~~---------------------~l~~~----------~~h~~ 1078 (1348)
.|...|.+++|...+. +|++++.|..||||.+.-+. ....+ .+|.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe- 267 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE- 267 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-
Confidence 4667899999987554 88999999999999764221 11112 3788
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCe
Q 000697 1079 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1158 (1348)
Q Consensus 1079 ~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~ 1158 (1348)
+.|.++.| ++.+..|++++.|.++.+|...+..|-....-......+....-.+ .-|++++..+++-|..|.
T Consensus 268 --DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g----~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 268 --DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG----GLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred --cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceee----EEEcCCCCEEEEecccCc
Confidence 89999999 7888899999999999999987754544443333333333444444 789999999999999999
Q ss_pred EEEEECCCCc--eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-----------------------
Q 000697 1159 IMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----------------------- 1213 (1348)
Q Consensus 1159 IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----------------------- 1213 (1348)
.++|-..... .....+.+|.+. |+++ .+.|.|.++++.+.|.+-|+|-.-..+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~-V~dv-~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDG-VKDV-DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred EEEEeccCccceeecccccccccc-ceee-eecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 9999833221 133445677776 9999 667788888888888777765332000
Q ss_pred -----------eeeEee---------------------------------------------------------------
Q 000697 1214 -----------MLVCST--------------------------------------------------------------- 1219 (1348)
Q Consensus 1214 -----------~~v~~~--------------------------------------------------------------- 1219 (1348)
++.+.+
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 000000
Q ss_pred ---------------------cCCCCCCCCeEEEEEecCCCCCEEEEEECCC-----cEEEEEcCCCCcceEEEecCCCC
Q 000697 1220 ---------------------RPHTQQVERVVGISFQPGLDPAKIVSASQAG-----DIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1220 ---------------------~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG-----~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
+..-||...|.+++.+|+ ++++++++... .|++|+..+. ..+..+.+|.-.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~--gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLT 574 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT--GNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLT 574 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC--CCEEeehhhhCCccceEEEEEeccch-hhhheecccceE
Confidence 011247778999999999 99999998654 4999999988 677789999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.++|+|||++|++.|.|+++.+|+........++. .+...|..-|++..|+|++.++||+|.|.+|+||.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999999853222222211 01224557899999999999999999999999994
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=1.8e-17 Score=193.49 Aligned_cols=285 Identities=17% Similarity=0.202 Sum_probs=198.9
Q ss_pred eEEEEEcCC---CCEEEEEECCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1038 TKTALLQPF---SPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1038 I~sl~fspd---g~~Latgs~dg~I~VWd~~t~~------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
+.+..|++. ...|+.+.++|.|.++|.+... .+..+..|. ..|.++.|. +....|++++.|.++++
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~---nAifDl~wa--pge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK---NAIFDLKWA--PGESLLVSASGDSTIRP 126 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc---ceeEeeccC--CCceeEEEccCCceeee
Confidence 355677653 3489999999999999987532 235567788 899999994 67789999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECCCeEEEEECCCCce------------------
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQ------------------ 1169 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWDl~t~~~------------------ 1169 (1348)
||+.. .+..-. +.+.+|...|.+ ++|.+.+..+++ ||.||.|.|||++....
T Consensus 127 Wdvk~--s~l~G~---~~~~GH~~SvkS----~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 127 WDVKT--SRLVGG---RLNLGHTGSVKS----ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred eeecc--ceeecc---eeecccccccch----hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99976 222111 347899999999 888888776555 57999999999874320
Q ss_pred --------eeeeecCCCCC---CeEEEEEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeec----CCCCC---CCCeE
Q 000697 1170 --------MVNPIPSSSDC---SISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTR----PHTQQ---VERVV 1230 (1348)
Q Consensus 1170 --------~v~~l~~~~~~---~VtsL~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~----~~~~h---~~~I~ 1230 (1348)
.+....++... .|+.+ ++ .|...|++++. ||.|+|||+|......+.-. ....| ...++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv-~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVV-LF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEE-EE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 00111112111 24455 44 46777887776 99999999997653222110 11112 34577
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecCCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGS--LSALAVHRHAPIIASGSAKQLIKVFSLEG--EQL 1305 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h~~~--VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l 1305 (1348)
++..... |.++.+.+.|+.|.+|+++..+ .++..+.++... -..-..+||+.++++|+.|...++|.++. ...
T Consensus 276 nL~lDss--Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 276 NLILDSS--GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EEEecCC--CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888777 7887777779999999998643 345555544321 12334689999999999999999999654 233
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
..+.+ | .-.|++++|.|.. .-++|++.|.+++||+
T Consensus 354 ~~l~G-h-------t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 354 ALLLG-H-------TREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hhhhC-c-------ceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 34444 4 3789999998765 4577779999999995
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=1.4e-16 Score=181.59 Aligned_cols=294 Identities=16% Similarity=0.303 Sum_probs=215.5
Q ss_pred ccCCcccccccC----------CCCCeEEEEEcCC--CCEEEEEE--CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEE
Q 000697 1022 KLNNPIACWDTR----------FEKGTKTALLQPF--SPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1022 kl~~~i~~Wd~~----------~~~~I~sl~fspd--g~~Latgs--~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~ 1087 (1348)
++...+.+|+.. ...+|.|++|++- |.+|..-+ .+..+.||||+.+......+..+ ..|....
T Consensus 131 ~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn---e~v~~a~ 207 (626)
T KOG2106|consen 131 PLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN---EVVFLAT 207 (626)
T ss_pred cCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc---ceEEEEE
Confidence 344567778733 3478999999984 44665554 45568999999988888888777 7889999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
| +|.+..|+.....|.+..|+... +. +......+..+.. ...++++|.+ ++.+++|..+|.|.||+..+.
T Consensus 208 F--HPtd~nliit~Gk~H~~Fw~~~~--~~--l~k~~~~fek~ek---k~Vl~v~F~e-ngdviTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 208 F--HPTDPNLIITCGKGHLYFWTLRG--GS--LVKRQGIFEKREK---KFVLCVTFLE-NGDVITGDSGGNILIWSKGTN 277 (626)
T ss_pred e--ccCCCcEEEEeCCceEEEEEccC--Cc--eEEEeeccccccc---eEEEEEEEcC-CCCEEeecCCceEEEEeCCCc
Confidence 9 45555555555667999998865 22 2211123333332 2233488986 467889999999999999888
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe----------eeEee-c----------------
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM----------LVCST-R---------------- 1220 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~----------~v~~~-~---------------- 1220 (1348)
+ ..+....|.++ |.+++ .-.+| .|++|+.|..|..||-.-.+. .+++. +
T Consensus 278 ~-~~k~~~aH~gg-v~~L~-~lr~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 278 R-ISKQVHAHDGG-VFSLC-MLRDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred e-EEeEeeecCCc-eEEEE-EecCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 7 77777777665 99994 44455 455699999999999432110 00000 0
Q ss_pred ---------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC
Q 000697 1221 ---------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1221 ---------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~ 1291 (1348)
...+|......++.+|+ .+.+++++.|+.+++|+ .. ++.-+.. -..+..|++|||.| .+|.|+.
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v~lW~--~~-k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHVRLWN--DH-KLEWTKI-IEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCC--hhheeeccCcceEEEcc--CC-ceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence 01246777888999998 89999999999999999 22 3444333 35678999999999 9999999
Q ss_pred CCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1292 KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1292 Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.|...|.|.+...+.+++. . ..++++++|+|+|.+||.|+.|+.|+||
T Consensus 427 ~G~w~V~d~e~~~lv~~~~-d-------~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHT-D-------NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred cceEEEEecccceeEEEEe-c-------CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999999988777777765 2 3799999999999999999999999998
No 138
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=182.95 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=198.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+..+|++-.+|.|++||+.+++.+..|+++. ..+..+.|+.......+.+|+.||+||+||++......+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----~ 111 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-----S 111 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----e
Confidence 3679999999999999999999999999999 7889999986556788999999999999999873333322 2
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE----CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg----~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
...+.+.... +++-+-.++.+.+|. .+-.|.+||++..++.+..+...+...|+++.+.+.+.++|++|+.||
T Consensus 112 ~~~~~~~~f~---~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 112 WTQQSGTPFI---CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ccCCCCCcce---EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3444422221 244433455566553 467799999999884477666544445999998888999999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-----------
Q 000697 1203 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR----------- 1271 (1348)
Q Consensus 1203 ~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~----------- 1271 (1348)
-|.+||+......-...... .|.+.|.++.|... +.+.|.+-+..++..+|++..+. +...+....
T Consensus 189 LvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~-~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~ 265 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSK-KYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDN 265 (376)
T ss_pred eEEeeecCCCcchhhHHHhh-cccceeeeeeeecC-CcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhh
Confidence 99999998654221111122 45678999999877 45679999999999999999873 333332110
Q ss_pred -CCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCc-eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1272 -GSLSALAVHRHAPIIASGSA-KQLIKVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1272 -~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~g~-~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+-......++..++.++. -++..++-+... ....... ...+.++|..-|.++.|...+.++.|||.||.+.+|.
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~-~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE-PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCc-cccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11111112223445544443 555555543211 1111111 2223345668899999999999999999999999994
No 139
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.8e-17 Score=177.51 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=203.4
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
..++.+.+|. ++|..++- ......+.+++.|.+-+||.++. +.+. ..+.||.+.|++ +.|++.+
T Consensus 139 ~lvre~~GHk---DGiW~Vaa--~~tqpi~gtASADhTA~iWs~Es--g~CL-----~~Y~GH~GSVNs----ikfh~s~ 202 (481)
T KOG0300|consen 139 RLVRELEGHK---DGIWHVAA--DSTQPICGTASADHTARIWSLES--GACL-----ATYTGHTGSVNS----IKFHNSG 202 (481)
T ss_pred eehhhhcccc---cceeeehh--hcCCcceeecccccceeEEeecc--ccce-----eeecccccceee----EEecccc
Confidence 4566788999 89999988 55667899999999999999976 5443 358999999999 8999999
Q ss_pred CeEEEEECCCeEEEEEC------CC---------Cc------------------------eeeeeecCCCCCCeEEEEEe
Q 000697 1148 GYLYASGEVSSIMLWDL------EK---------EQ------------------------QMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl------~t---------~~------------------------~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
..+++++.|++-.||.. .. ++ .++..+.+|..- |.+. -|
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v-V~a~-dW 280 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV-VSAC-DW 280 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc-eEeh-hh
Confidence 99999999999999961 11 00 123445555443 5555 34
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
-..|+.+++++-|.+-.+||+.+++ .+. .+.||....+.++-+|. .+.+++.+.|.+.++||++..-..+..|+
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge-~v~---~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGE-VVN---ILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCc-eec---cccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 4578999999999999999999998 555 45688899999999999 99999999999999999997667889999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+|...|++..|.-+ ..+++|+.|.+|+|||+. ...+.+++. .++++.++.+..+..+|.--.+..|++
T Consensus 355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt---------dS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT---------DSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec---------CCccceeEeecCCceEEeccCCceEEE
Confidence 99999999999865 468899999999999965 356777776 268999999998889999888899999
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
||
T Consensus 425 fD 426 (481)
T KOG0300|consen 425 FD 426 (481)
T ss_pred Ee
Confidence 86
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.5e-17 Score=195.99 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=186.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+-+.|+| .++|++|+|++.||.|++|+......+++.+ ..+...|.+ ..-.++++++|+.+++|.
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti------~~~g~~v~~------ia~~s~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETI------DISGELVSS------IACYSNHFLTGSEQNTVL 79 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchh------hccCceeEE------EeecccceEEeeccceEE
Confidence 67889999 7899999999999999999986633333322 223333433 333567999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
+|....++ ...+-....-++.++ .++.+|+++++|+.|-.|++.+..... ..+ ..++|.++|.++.++|. +
T Consensus 80 ~y~fps~~--~~~iL~Rftlp~r~~-~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~---~lrgh~apVl~l~~~p~--~ 150 (933)
T KOG1274|consen 80 RYKFPSGE--EDTILARFTLPIRDL-AVSGSGKMIAAGSDDTAVKLLNLDDSS-QEK---VLRGHDAPVLQLSYDPK--G 150 (933)
T ss_pred EeeCCCCC--ccceeeeeeccceEE-EEecCCcEEEeecCceeEEEEeccccc-hhe---eecccCCceeeeeEcCC--C
Confidence 99988776 222333334458888 677899999999999999999998776 333 33477899999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecC--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceEEEEecc
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYH 1311 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~ 1311 (1348)
++||+.+.||.|++||+.++ .+..++.+- ...++.++|||+|..++..+.|+.|++|+.. .+....++.
T Consensus 151 ~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~- 228 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD- 228 (933)
T ss_pred CEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-
Confidence 99999999999999999987 555555432 3356789999998888888899999999954 455556655
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. +...+++++|+|.|+|||+++.||.|.|||
T Consensus 229 ~~-----~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 229 KL-----SSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred cc-----cccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 21 224499999999999999999999999997
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-18 Score=206.05 Aligned_cols=240 Identities=20% Similarity=0.396 Sum_probs=207.0
Q ss_pred cccccCCC----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1028 ACWDTRFE----KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1028 ~~Wd~~~~----~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
.+|+.++. ..+.++..-..++.+++|+.|..+.+|....-..+..+.+|. ..|.++.| +.+..+|++|+.+
T Consensus 17 r~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f--~~~E~Llaagsas 91 (825)
T KOG0267|consen 17 RVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---SPIESLTF--DTSERLLAAGSAS 91 (825)
T ss_pred ccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---Ccceeeec--CcchhhhcccccC
Confidence 35766653 567788877778899999999999999988777777899999 89999999 7888999999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
|+|++||++. .+.+ +++.+|...+.+ ++|+|-+.+.+.|+.|+.+++||.+... |...+.+|... |.
T Consensus 92 gtiK~wDlee----Ak~v---rtLtgh~~~~~s----v~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~v-v~ 158 (825)
T KOG0267|consen 92 GTIKVWDLEE----AKIV---RTLTGHLLNITS----VDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRV-VD 158 (825)
T ss_pred Cceeeeehhh----hhhh---hhhhccccCcce----eeeccceEEeccccccccceehhhhccC-ceeeecCCcce-eE
Confidence 9999999965 2223 678999998887 8999999999888999999999999888 99999986554 77
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
.+ .+.|+|++++.|+.|.++++||...++ +... +..|.+.+.++.|+|. .-.+++|+.|++|++||+++. +.
T Consensus 159 ~l-~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~e---f~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dletf-e~ 230 (825)
T KOG0267|consen 159 VL-RLSPDGRWVASGGEDNTVKIWDLTAGK-LSKE---FKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLETF-EV 230 (825)
T ss_pred EE-eecCCCceeeccCCcceeeeecccccc-cccc---cccccccccccccCch--hhhhccCCCCceeeeecccee-EE
Confidence 77 789999999999999999999999887 5554 4567799999999998 889999999999999999987 67
Q ss_pred eEEEecCCCCeEEEEEeCCCCEEEEEeCCC
Q 000697 1264 YLTIDAHRGSLSALAVHRHAPIIASGSAKQ 1293 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg~~LasgS~Dg 1293 (1348)
+.........|.+..|+|+++.+++|..+.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhh
Confidence 777777788999999999999999987653
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.9e-16 Score=171.66 Aligned_cols=257 Identities=14% Similarity=0.294 Sum_probs=184.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe-cC-CCeEEEEECCCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQ-SGYLYASGEVSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws-~~-~~~Ll~gg~Dg~ 1158 (1348)
+-|.++.| ...|..++||+.|++|+|||.....+...+...| +.|.+.|.. +.|- |. |..+++++.|++
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~r----V~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWR----VVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEE----EEecCccccceEEEEecCCc
Confidence 67999999 7899999999999999999987767777777555 557888877 7784 33 556677789999
Q ss_pred EEEEECC--CCc------eeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCee---------eEeec
Q 000697 1159 IMLWDLE--KEQ------QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDML---------VCSTR 1220 (1348)
Q Consensus 1159 IrVWDl~--t~~------~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~---------v~~~~ 1220 (1348)
+.||.-. ..+ ....++..... .|+.+.+.+. -|-.+++++.||.+|||+.-..-.. .....
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999742 111 02234444444 4999955433 3668999999999999987643211 11111
Q ss_pred CCCCCCCCeEEEEEecC-CCCCEEEEEECC-----CcEEEEEcCCCC---cceEEEecCCCCeEEEEEeCC-CC---EEE
Q 000697 1221 PHTQQVERVVGISFQPG-LDPAKIVSASQA-----GDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRH-AP---IIA 1287 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~-~~g~~LaSgs~D-----G~I~IWDlr~~~---~~v~t~~~h~~~VtsLa~spd-g~---~La 1287 (1348)
+...+.....|+.|+|. .....|+.|+.+ +.++||...... ..+.++.+|..+|+.++|.|+ |+ +||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 22245677889999876 235678888876 579999877553 345567799999999999997 32 899
Q ss_pred EEeCCCcEEEEEcCCce-------------EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLEGEQ-------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~g~~-------------l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++.|| |+||++.... +..+..+.-+....|.+.|+.+.|+-.|.+|++.|.||.|++|.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 999999 9999965311 11111000011235779999999999999999999999999994
No 143
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=6.7e-18 Score=186.01 Aligned_cols=247 Identities=15% Similarity=0.226 Sum_probs=189.3
Q ss_pred ccCCcccccccCC----------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEee
Q 000697 1022 KLNNPIACWDTRF----------EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1091 (1348)
Q Consensus 1022 kl~~~i~~Wd~~~----------~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns 1091 (1348)
..++++..|+... .+.|..|+++. ..++++++|.+|+.|.++ +..++++.+.. .+..+.- .
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s----~~~gIdh--~ 156 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKS----VYLGIDH--H 156 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeeccc----ccccccc--c
Confidence 4567788888764 46899999987 667788889999999987 45667776554 5666666 3
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCcee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~ 1170 (1348)
..++.++|+|.+ |.|||.+...-. +.+.--.+.+.+ +.|+|....|+++ +.|+.|.+||+++.. +
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R~~Pv-------~smswG~Dti~s----vkfNpvETsILas~~sDrsIvLyD~R~~~-P 222 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQRDNPV-------SSMSWGADSISS----VKFNPVETSILASCASDRSIVLYDLRQAS-P 222 (433)
T ss_pred cccccccccCce--eeecccccCCcc-------ceeecCCCceeE----EecCCCcchheeeeccCCceEEEecccCC-c
Confidence 466788888875 999998652211 222323344444 8899987776666 499999999999998 7
Q ss_pred eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1171 v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
++.+..... -+.| +|+|++..|++|++|..++.||+|.....+. .+.+|.+.|.++.|+|. |+.+++||.|.
T Consensus 223 l~KVi~~mR--TN~I-swnPeafnF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfspt--G~EfvsgsyDk 294 (433)
T KOG0268|consen 223 LKKVILTMR--TNTI-CWNPEAFNFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPT--GQEFVSGSYDK 294 (433)
T ss_pred cceeeeecc--ccce-ecCccccceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCC--cchhccccccc
Confidence 766554322 3667 5667999999999999999999998765554 56688899999999999 99999999999
Q ss_pred cEEEEEcCCCCcceEEEec-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1251 DIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~-h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
+|+||..+.+ .....+.. .-..|.|+.|+-|.+++++||+|+.|++|..
T Consensus 295 sIRIf~~~~~-~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 295 SIRIFPVNHG-HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEeecCCC-cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999876 22222211 1246899999999999999999999999983
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=3.5e-17 Score=181.28 Aligned_cols=252 Identities=21% Similarity=0.341 Sum_probs=177.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC------CC---ceeEEeeeecccCCCCcccccceEEEEecC-CCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ------KD---KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL 1150 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~------~~---~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~L 1150 (1348)
+.|..+.-.+-.+..+.++=+..|.|.||++... .+ .........++.+|...-+. ++|+|- .+.+
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~----LdWSp~~~g~L 227 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG----LDWSPIKTGRL 227 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee----eeccccccccc
Confidence 3444444422235556666788999999998431 00 00111122445667655444 999984 4568
Q ss_pred EEEECCCeEEEEECCCCceee---eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1151 YASGEVSSIMLWDLEKEQQMV---NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~~~v---~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
++|...+.|++|...++. -. ..+.+|..+ |-.|.|.+....+|++|+.||+|+|||+|.+.+...... +.|.+
T Consensus 228 lsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~S-VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~s 303 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKS-VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNS 303 (440)
T ss_pred ccCccccceEeeeeccCc-eeecCccccccccc-hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCC
Confidence 888788899999988875 32 234566665 999966666778999999999999999998843333321 46779
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC--CcceEEEecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCce
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH--KDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~--~~~v~t~~~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
.|+-|.|+.. ..+|++|+.||+++|||+|.. ++++.+|+.|+.+|+++.|||+. ..|++++.|..|.+||+.-+.
T Consensus 304 DVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 DVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999988 669999999999999999953 37899999999999999999974 588889999999999953110
Q ss_pred ------------EEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCe
Q 000697 1305 ------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADAC 1343 (1348)
Q Consensus 1305 ------------l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~ 1343 (1348)
+..+.. .--|..+....+..+.||+.- .+|++.+.||.
T Consensus 382 D~ee~~~~a~~~L~dlPp-QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPP-QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ChhhhccccccchhcCCc-eeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 111110 000111223568889999876 57777777874
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=186.00 Aligned_cols=282 Identities=16% Similarity=0.262 Sum_probs=220.3
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
|.......|..++|-|||..|+.+. +..+.|||..+|..++++++|. +.|.+++| +.||+.+++|+.|+.|.+|
T Consensus 7 ~r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK---DtVycVAy--s~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 7 WRDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAY--AKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhcccccchheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc---ceEEEEEE--ccCCceeccCCCceeEEEe
Confidence 4444445899999999999888776 5689999999999999999999 99999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
.-.. +|. + -..|...|.+ +.|+|-+..+++++-+ ..-+|...... +...+ ....|.+. .|.
T Consensus 81 ~~kl-EG~--L------kYSH~D~IQC----MsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~k--ss~R~~~C-sWt 141 (1081)
T KOG1538|consen 81 TSKL-EGI--L------KYSHNDAIQC----MSFNPITHQLASCSLS-DFGLWSPEQKS--VSKHK--SSSRIICC-SWT 141 (1081)
T ss_pred cccc-cce--e------eeccCCeeeE----eecCchHHHhhhcchh-hccccChhhhh--HHhhh--hheeEEEe-eec
Confidence 8643 121 1 1358888887 8999988888887632 25578766544 22222 23346666 678
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~---~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
.+|.+++.|-.||+|.+-+....+ .++.- ...|..++|.+++|+|. +....+++...+.++.+|.+.. +.+..
T Consensus 142 nDGqylalG~~nGTIsiRNk~gEe-k~~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk 217 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKNGEE-KVKIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGK 217 (1081)
T ss_pred CCCcEEEEeccCceEEeecCCCCc-ceEEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecc
Confidence 899999999999999987544333 44433 33467789999999997 2335788888888898888873 34433
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
-+.-.-...|+.+.++|.++..|+.|+.+++|.-+|-.+.++.. .+ ..|+.++.+|++++++.|..||+|.-
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-~D-------~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-QD-------SWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-cc-------eeEEEEEEccCCceEEEEEccCeeeh
Confidence 33334456789999999999999999999999999988888765 44 78999999999999999999999987
Q ss_pred cC
Q 000697 1347 HS 1348 (1348)
Q Consensus 1347 Wd 1348 (1348)
|+
T Consensus 290 yN 291 (1081)
T KOG1538|consen 290 YN 291 (1081)
T ss_pred hh
Confidence 64
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=2.1e-17 Score=187.51 Aligned_cols=251 Identities=18% Similarity=0.293 Sum_probs=202.7
Q ss_pred cCCcccccccCCC---------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEE
Q 000697 1023 LNNPIACWDTRFE---------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1023 l~~~i~~Wd~~~~---------------~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~ 1087 (1348)
-++-+++|+.... +-|.++.++|||+.|++|++-.++.|||+......-..+... ..-.+.+++
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa 516 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALA 516 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhh
Confidence 4466888988753 558899999999999999999999999998653322211111 013566777
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~ 1167 (1348)
. ++|.+..+++..||.|.|||+.. ..++ +.+++|...+.| ++.+++|..|.+||-|++||.||++.+
T Consensus 517 ~--spDakvcFsccsdGnI~vwDLhn----q~~V---rqfqGhtDGasc----Idis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 517 I--SPDAKVCFSCCSDGNIAVWDLHN----QTLV---RQFQGHTDGASC----IDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred c--CCccceeeeeccCCcEEEEEccc----ceee---ecccCCCCCcee----EEecCCCceeecCCCccceeehhhhhh
Confidence 7 79999999999999999999955 4555 789999999998 888899999999999999999999988
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. .+..... .+.|.++ -+.|.+.+++.|-.++.|.|......++. . ...|.+.|.++.|.+. |+++++.+
T Consensus 584 r-qlqqhdF--~SQIfSL-g~cP~~dWlavGMens~vevlh~skp~ky-q----lhlheScVLSlKFa~c--GkwfvStG 652 (705)
T KOG0639|consen 584 R-QLQQHDF--SSQIFSL-GYCPTGDWLAVGMENSNVEVLHTSKPEKY-Q----LHLHESCVLSLKFAYC--GKWFVSTG 652 (705)
T ss_pred h-hhhhhhh--hhhheec-ccCCCccceeeecccCcEEEEecCCccce-e----ecccccEEEEEEeccc--CceeeecC
Confidence 7 4443332 3348999 66789999999999999999888766622 1 2256799999999999 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|..+..|.+..+ ..+...+ ....|.+++++-+.++|++||.|+...||.+
T Consensus 653 kDnlLnawrtPyG-asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYG-ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccc-cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999887 4554444 3567999999999999999999999888864
No 147
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-13 Score=169.75 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=187.7
Q ss_pred EECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEE
Q 000697 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1141 (1348)
Q Consensus 1062 Wd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1141 (1348)
|+.+ |..+..+..|. ..|..++.. ++++.++++||+||+||+|+.....+......+..++.-....+.. +
T Consensus 1034 W~p~-G~lVAhL~Ehs---~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~----v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS---SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK----V 1104 (1431)
T ss_pred CCcc-ceEeehhhhcc---ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE----E
Confidence 7765 88888898888 777788874 5667999999999999999997644432222222222222334444 5
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCc------eeeeeecCCCCCCeEEEEEecC-CCC-EEEEEeCCCeEEEEECCCCC
Q 000697 1142 DWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPIPSSSDCSISALTASQV-HGG-QLAAGFVDGSVRLYDVRTPD 1213 (1348)
Q Consensus 1142 ~ws~~~~~Ll~gg~Dg~IrVWDl~t~~------~~v~~l~~~~~~~VtsL~~~s~-dg~-~LvsGs~DG~VrvwDlr~~~ 1213 (1348)
...+.+..+++++.||.|++.+++... .+.+....+..+.+.++..+.. .+. .++.+...+.|..||+|+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 666788999999999999999987621 0233333445555777644332 334 78889999999999999876
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCC---E-EEE
Q 000697 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAP---I-IAS 1288 (1348)
Q Consensus 1214 ~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~---~-Las 1288 (1348)
.. ... .+....+.|++++.+|. +.++++|+..|.+-+||+|-+ .++..+. ++..+++.+..+|-.+ . +.+
T Consensus 1185 ~~-w~l-k~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1185 DA-WRL-KNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hH-Hhh-hcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 32 222 22233478999999999 999999999999999999987 7777765 4567888888887533 4 444
Q ss_pred Ee-CCCcEEEEEc-CCceEEEEeccCCc---c-----cc----cccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1289 GS-AKQLIKVFSL-EGEQLGTIRYHHPS---F-----MA----QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1289 gS-~Dg~I~Vwd~-~g~~l~~i~~~h~~---f-----~~----~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+ ..+.|.+|++ .|..-..+.. .++ + .. ++.-......+..-+.++.+|++|..|+.||
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~-s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWA-SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEc-CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44 5788999994 4544444443 211 0 00 1122333445566678999999999999997
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=2.8e-15 Score=172.26 Aligned_cols=259 Identities=11% Similarity=0.127 Sum_probs=181.4
Q ss_pred CCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~L-atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~IrIWdl~~ 1113 (1348)
..+.+++|+|++..+ ++++.++.|++||..+++.+..+..+. .+..+.| +++++.++++ +.++.|++||+.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----DPELFAL--HPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCC
Confidence 447789999999976 566788999999999988887776544 3567788 6888877655 5689999999965
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
.+ .+ ..+.. ...+.+ ++|++++..+++++.++ .+.+||.++.+ .+..+.... .+.++ .+++++
T Consensus 105 --~~--~~---~~~~~-~~~~~~----~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg 168 (300)
T TIGR03866 105 --RK--VL---AEIPV-GVEPEG----MAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVLVDQ--RPRFA-EFTADG 168 (300)
T ss_pred --Ce--EE---eEeeC-CCCcce----EEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEEcCC--CccEE-EECCCC
Confidence 22 22 11221 122334 88999999999887664 57788998877 655543322 24566 567888
Q ss_pred CEEEEE-eCCCeEEEEECCCCCeeeEeecCC--CCC--CCCeEEEEEecCCCCCEEEE-EECCCcEEEEEcCCCCcceEE
Q 000697 1193 GQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--TQQ--VERVVGISFQPGLDPAKIVS-ASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1193 ~~LvsG-s~DG~VrvwDlr~~~~~v~~~~~~--~~h--~~~I~sl~~sp~~~g~~LaS-gs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+.++++ ..+|.|++||+++++ ....+... ..+ ......+.|+|+ ++.+++ ...++.|.+||++++ +.+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~d--g~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKD--GKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCC--CCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 877554 469999999999876 33333111 001 123456889998 777544 455678999999876 55554
Q ss_pred EecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
+. +...+.+++|+|+|..|+++ +.++.|+|||. +++.+..++. . ...++++|+|
T Consensus 245 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~--------~~~~~~~~~~ 300 (300)
T TIGR03866 245 LL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-G--------RLPWGVVVRP 300 (300)
T ss_pred EE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-c--------cccceeEeCC
Confidence 43 44578999999999998876 46899999995 5666777765 2 3457787765
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=1e-16 Score=181.94 Aligned_cols=269 Identities=14% Similarity=0.239 Sum_probs=198.4
Q ss_pred EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE--eCCCeEEEEeccCCCCceeEEeeeeccc
Q 000697 1051 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA--SCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1128 (1348)
Q Consensus 1051 atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg--s~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1128 (1348)
.+++....+++||....+....+-.+.++ -.+.+++| +.. ++|+++ +.|..|++|.-....++...+ +...
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w--~~~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~---~k~~ 78 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNW--QRR-NFLVVASMAGDKVMRIKEKDGKTPEVPRV---RKLT 78 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCC-Ccceeeec--ccc-ceEEEeecCCceeEEEecccCCCCcccee---eccc
Confidence 33444568999999877666666655533 35889999 333 335555 467889999764422223322 2223
Q ss_pred CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1129 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1129 ~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
+. .-.| ++.....-++++||..+.|+|||++... +.+.++.|.+. |+++ .++....+|++++..|.|.|..
T Consensus 79 gd--~~~C----v~~~s~S~y~~sgG~~~~Vkiwdl~~kl-~hr~lkdh~st-vt~v-~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 79 GD--NAFC----VACASQSLYEISGGQSGCVKIWDLRAKL-IHRFLKDHQST-VTYV-DYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred cc--hHHH----HhhhhcceeeeccCcCceeeehhhHHHH-HhhhccCCcce-eEEE-EecCCcceeEEeccCCcEEEEe
Confidence 22 1222 3333445889999999999999999877 78888888765 9999 5667788999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIA 1287 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~La 1287 (1348)
+.++.. ...+ .+ +....|.-+.++|. ....|.+++.+|.|.+||+........-...|..+...++|+|... +|+
T Consensus 150 ~~t~~~-tt~f-~~-~sgqsvRll~ys~s-kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 150 TKTKQK-TTTF-TI-DSGQSVRLLRYSPS-KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred cccCcc-ccce-ec-CCCCeEEEeecccc-cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 998763 3333 12 22356778999998 5667888999999999999977434445567999999999999755 788
Q ss_pred EEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1288 SGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+.|+.|.+||+.. .....+.+ + .+.+.++|.++|.+|++|+..|.|..||
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y--~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTY--S-------HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred EecccceEEEeecccccccceeee--c-------CCcceeeecCCceEEEeecCCceEEEEe
Confidence 899999999999764 33445555 2 5789999999999999999999999986
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=1.6e-16 Score=170.90 Aligned_cols=207 Identities=21% Similarity=0.337 Sum_probs=154.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc--------eeEEeeeecccCCCCcccccceEEEEecC-CCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK--------QKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLY 1151 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~--------~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll 1151 (1348)
+.|.++... ...|.++++|+.||.|.+||+...... ...+.....-.+|.-.|.+ +.|-|- .+.+.
T Consensus 44 GsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss----~~WyP~DtGmFt 118 (397)
T KOG4283|consen 44 GSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISS----AIWYPIDTGMFT 118 (397)
T ss_pred Cccceeeec-cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeee----eEEeeecCceee
Confidence 788998884 357899999999999999999653211 1111111223456666666 778775 45566
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe--cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1152 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS--QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1152 ~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~--s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
+++.|.+++|||.++-+ ....++... .|.+-++. ....-++++|..|-.|++.|+.++. ...+ +.||.+.|
T Consensus 119 ssSFDhtlKVWDtnTlQ-~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~---LsGHr~~v 191 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQ-EAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHT---LSGHRDGV 191 (397)
T ss_pred cccccceEEEeecccce-eeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceee---eccccCce
Confidence 66799999999999987 666665422 24443211 1124578889999999999999998 4443 45788999
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe--------------cCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--------------AHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--------------~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
.++.|+|. ..-.|++|+.||.|++||+|....+...+. .|.+.+.+++|..+|.++++.+.|..+
T Consensus 192 laV~Wsp~-~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 192 LAVEWSPS-SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred EEEEeccC-ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 99999998 566789999999999999986533444443 456789999999999999999999999
Q ss_pred EEEEc
Q 000697 1296 KVFSL 1300 (1348)
Q Consensus 1296 ~Vwd~ 1300 (1348)
++|+.
T Consensus 271 r~wn~ 275 (397)
T KOG4283|consen 271 RVWNM 275 (397)
T ss_pred EEeec
Confidence 99994
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=1.4e-16 Score=186.29 Aligned_cols=258 Identities=16% Similarity=0.234 Sum_probs=187.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
.|.+.|..+.|-|-+..|++++.|.++++||+++++++.. +.+|. ..|.+++|. ..+...+++|+.||.|.|||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~---~SvkS~cf~-~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT---GSVKSECFM-PTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc---cccchhhhc-cCCCcceeeccCCCcEEEEE
Confidence 4668899999999667999999999999999999888776 88999 899999996 35778999999999999999
Q ss_pred ccCCCC--cee------------------EEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCce
Q 000697 1111 DYDQKD--KQK------------------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQ 1169 (1348)
Q Consensus 1111 l~~~~~--~~~------------------lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~IrVWDl~t~~~ 1169 (1348)
+..... ..+ +....+.-..+...+.+... +.+.+|+..|+++|. |+.|+|||+++..
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~- 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT-VVLFKDESTLASAGAADSTIKVWDLRKNY- 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE-EEEEeccceeeeccCCCcceEEEeecccc-
Confidence 864220 000 00001112223344444333 444568888998875 9999999999865
Q ss_pred eeee--------ecCC--CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCC
Q 000697 1170 MVNP--------IPSS--SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1170 ~v~~--------l~~~--~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
+... +..+ ....++++ ..+..|.++.+.+.|+.|..|+++.... .+..+..+.. ...-..-..+|+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL-~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd- 328 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNL-ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPD- 328 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEE-EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCC-
Confidence 3221 2222 12247888 5666788888888999999999996541 1221111110 111223345788
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
+.++++|+.|+...+|.+.+...+...+.+|.-.|++++|.|... -+++++.|..++||++
T Consensus 329 -~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 329 -DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred -CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 999999999999999999988788888999999999999988532 3555599999999995
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=174.80 Aligned_cols=245 Identities=18% Similarity=0.337 Sum_probs=176.5
Q ss_pred CCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCC----------------CcEEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000697 1034 FEKGTKTALLQPFS--PIVVAADENERIKIWNYEE----------------DTLLNSFDNHDFPDKGISKLCLVNELDVS 1095 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg--~~Latgs~dg~I~VWd~~t----------------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~ 1095 (1348)
|.++++-+.-++.+ .+.++-++.|.|.|||+.. .+.+.++.+|. ..=.+|+|+| -...
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---~EGy~LdWSp-~~~g 225 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---GEGYGLDWSP-IKTG 225 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---ccceeeeccc-cccc
Confidence 33455555555544 4666677899999999752 24567788888 6778999954 2445
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-EEEEECCCeEEEEECCCCc--eeee
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQ--QMVN 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~-Ll~gg~Dg~IrVWDl~t~~--~~v~ 1172 (1348)
.|++|..-+.|++|...+ +.... .-+.+.+|+..|.. ++|+|.... +++++.||+|+|||++.+. .++.
T Consensus 226 ~LlsGDc~~~I~lw~~~~--g~W~v--d~~Pf~gH~~SVED----LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPST--GSWKV--DQRPFTGHTKSVED----LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ccccCccccceEeeeecc--Cceee--cCccccccccchhh----hccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 688898889999999876 33321 22456789999999 999997655 5556799999999999873 1444
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
+ +.|.. .|+-| .++....+|++|+.||+++|||+|.-+. .+. .++.|+.+|++|.|+|. ....|++++.|.
T Consensus 298 ~-kAh~s-DVNVI-SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA---~fk~Hk~pItsieW~p~-e~s~iaasg~D~ 370 (440)
T KOG0302|consen 298 T-KAHNS-DVNVI-SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA---TFKYHKAPITSIEWHPH-EDSVIAASGEDN 370 (440)
T ss_pred e-eccCC-ceeeE-EccCCcceeeecCCCceEEEEEhhhccCCCcce---eEEeccCCeeEEEeccc-cCceEEeccCCC
Confidence 3 55655 49999 5555566999999999999999996542 333 34467899999999998 788899999999
Q ss_pred cEEEEEcCCCCc---------------ceEEEecC--CCCeEEEEEeCCCC-EEEEEeCCCcEEEE
Q 000697 1251 DIQFLDIRNHKD---------------AYLTIDAH--RGSLSALAVHRHAP-IIASGSAKQLIKVF 1298 (1348)
Q Consensus 1251 ~I~IWDlr~~~~---------------~v~t~~~h--~~~VtsLa~spdg~-~LasgS~Dg~I~Vw 1298 (1348)
.|.+||+.-... +-+-+-.| ...+..+.||+.-+ ++++.+.|| +.||
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999864311 00111123 34688899999765 777777777 4444
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=6.3e-16 Score=168.38 Aligned_cols=282 Identities=18% Similarity=0.294 Sum_probs=204.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEEe-----eCCCCEEEE
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVN-----ELDVSLLLV 1099 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------------~~l~~~~~h~~~~~~ItsL~f~n-----s~d~~~L~t 1099 (1348)
-...+.|+|||..|++-+.|..+++|++... +...+++- ..+..|..-+|.. .|+..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccceeee
Confidence 4567899999999999999999999987421 11111211 2235677777741 367789999
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECC-CCcee-eee-e--
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-KEQQM-VNP-I-- 1174 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~-t~~~~-v~~-l-- 1174 (1348)
.+.+.-|++||..+ |+.+. +++. -+|...+.. +.+++|++||.+|++| ..+.|+++|+. .+..+ +.. +
T Consensus 129 ssr~~PIh~wdaft--G~lra--Sy~~-ydh~de~ta-AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFT--GKLRA--SYRA-YDHQDEYTA-AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ccccCceeeeeccc--ccccc--chhh-hhhHHhhhh-heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999987 44332 2222 345555554 4469999999999876 56789999994 33311 111 1
Q ss_pred -cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcE
Q 000697 1175 -PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDI 1252 (1348)
Q Consensus 1175 -~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I 1252 (1348)
+....+.|.++++.+.+...++.|+....+-||.-..... ... ..+|.+.|+.++|.++ |+.|.+|.. |-.|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~l---lggh~gGvThL~~~ed--Gn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQL---LGGHGGGVTHLQWCED--GNKLFSGARKDDKI 275 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eee---ecccCCCeeeEEeccC--cCeecccccCCCeE
Confidence 1122344777755555667999999999988887776663 332 2378899999999999 889998885 6789
Q ss_pred EEEEcCCCCcceEEEecCCC-CeE--EEEEeCCCCEEEEEeCCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEE
Q 000697 1253 QFLDIRNHKDAYLTIDAHRG-SLS--ALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1253 ~IWDlr~~~~~v~t~~~h~~-~Vt--sLa~spdg~~LasgS~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
-.||+|..+.++..+..|.+ .=. -+...|++++|++|+.||.|++||+. |+.+..+.. ++ ..++.++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-~s-------d~vNgvs 347 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-YS-------DTVNGVS 347 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-cc-------cccccee
Confidence 99999988788888887765 222 34567889999999999999999965 565666655 44 7899999
Q ss_pred EeCCCCEEEEEECC
Q 000697 1328 FHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1328 fspdg~~Latgs~D 1341 (1348)
++|--.++||++..
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99998888887643
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.1e-16 Score=169.31 Aligned_cols=255 Identities=13% Similarity=0.164 Sum_probs=174.9
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
..+++|. +.|++++| +.||++|+|++.|++|+||++.+-..+. ..+.+.--.. + -...+.|.||...+
T Consensus 80 ~~LKgH~---~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~e--Hr~~R~nve~-d----hpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 80 SVLKGHK---KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKE--HRCIRQNVEY-D----HPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhccC---CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhh--hhHhhccccC-C----CceEEEECCCcceE
Confidence 3578888 89999999 7899999999999999999997621111 1011111000 1 12238899998888
Q ss_pred EEEE-CCCeEEEEECCCCce---eee-------eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1151 YASG-EVSSIMLWDLEKEQQ---MVN-------PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1151 l~gg-~Dg~IrVWDl~t~~~---~v~-------~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
++.. ...++++|-+.+.+. ... .+...+...|.++ -...++.++++++.|..|.+||++ ++ ....+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i-GiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~i 224 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI-GIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSI 224 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEE-eecCCceEEEEecCCCcEEEEecC-Cc-eeeee
Confidence 7775 456799997654320 000 1222223335555 334567899999999999999999 44 44444
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-------cceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1220 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-------~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
.+.. ..-+..+++|+ |+++++++..-.|++|.+--.+ ..+..+++|...|..++|+++...+++.|.|
T Consensus 225 dtnq---~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 225 DTNQ---SSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred cccc---ccccceeeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 3332 45567889999 9999999999999999975322 3456788999999999999999999999999
Q ss_pred CcEEEEEcC-----CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1293 QLIKVFSLE-----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1293 g~I~Vwd~~-----g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
|+++|||++ ++....++. -..+.....+.-..++.+|.|..||.+. ...+++|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~-g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKE-GSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CcEEEeeccceEecCCCchHhhc-CCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 999999964 222233332 2122222334445899999999998764 3355554
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=180.01 Aligned_cols=237 Identities=22% Similarity=0.324 Sum_probs=188.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEEECCCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~gg~Dg~I 1159 (1348)
..|++++| +.+.+.|+.+-.||.|.||++... --.+. .+.++. ..|.+ ++|. +++.|++.+.+|.|
T Consensus 26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~-----vi~g~~drsIE~----L~W~-e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNN-WFLEP-----VIHGPEDRSIES----LAWA-EGGRLFSSGLSGSI 92 (691)
T ss_pred cceEEEEE--eccCCceeeeccCCcEEEEccCCC-ceeeE-----EEecCCCCceee----EEEc-cCCeEEeecCCceE
Confidence 68999999 678888999999999999999661 11222 244443 34445 8998 78999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~ 1239 (1348)
.-||+.+.+ ....+....+. |+++ +..+.+..++.||.||.+..++...++ +. ....+...++.|.+++|+|+
T Consensus 93 ~EwDl~~lk-~~~~~d~~gg~-IWsi-ai~p~~~~l~IgcddGvl~~~s~~p~~-I~-~~r~l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 93 TEWDLHTLK-QKYNIDSNGGA-IWSI-AINPENTILAIGCDDGVLYDFSIGPDK-IT-YKRSLMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred EEEecccCc-eeEEecCCCcc-eeEE-EeCCccceEEeecCCceEEEEecCCce-EE-EEeecccccceEEEEEecCC--
Confidence 999999998 77777765554 9999 677888999999999977777777665 22 22234445689999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCCcceEEEec--------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1240 PAKIVSASQAGDIQFLDIRNHKDAYLTIDA--------HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1240 g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~--------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
+..+++|+.||.|++||...+ ..+..... ...-|+++.|-.+ ..|++|...|+|++|| ..|..+..++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh
Confidence 999999999999999999987 34442211 1224677777744 4889999999999999 77888888888
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
|. +.|.+++..+++.+++++|.|+.|.-|
T Consensus 244 -h~-------adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 244 -HD-------ADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred -hh-------cceeEEEEcCCCCeEEEccCCCceEEE
Confidence 66 889999999999999999999988655
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=3.5e-16 Score=177.32 Aligned_cols=259 Identities=18% Similarity=0.238 Sum_probs=192.0
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC-Ce
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GY 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~ 1149 (1348)
..++.+. ++|++++|.+..+.+++++|..-|.|-+||+....... ..+..+..|..+|.+ +.|+|.+ ..
T Consensus 180 ~v~kv~~---~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---d~v~~f~~hs~~Vs~----l~F~P~n~s~ 249 (498)
T KOG4328|consen 180 NVAKVTD---RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---DGVYLFTPHSGPVSG----LKFSPANTSQ 249 (498)
T ss_pred ceeEecc---cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---CceEEeccCCccccc----eEecCCChhh
Confidence 3445555 79999999766666899999999999999995321111 122457889999998 8888764 57
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~-~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
+++++.||+|+.-|+++.. ....+.... ...+.++ -++.+...+++|..=|...+||+|++......+ .-|+..
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~-d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~---~lh~kK 324 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSL-DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL---RLHKKK 324 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeec-cccCCCccEEEeecccceEEEEeecCCccchhh---hhhhcc
Confidence 8888999999999999865 222222211 2224444 455566677777777899999999887544433 345679
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC----
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE---- 1301 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~---- 1301 (1348)
|++++++|. ...+|++|+.|++++|||+|... .++.....|...|.+..|+|.+..|+|.+.|..|+|||..
T Consensus 325 I~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 325 ITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 999999998 77899999999999999999642 2344455699999999999998889999999999999952
Q ss_pred -CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 -g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+..|. |..+.+++..+ ...+|+|+..++++|-.-..|-|||
T Consensus 404 ~~~p~~~I~--Hn~~t~RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 404 KDEPLGTIP--HNNRTGRWLTP-FKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCccceee--ccCcccccccc-hhheeCCCccEEEEeccCcceeEEc
Confidence 23334443 66555555444 4567999999999998777777765
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=3.1e-16 Score=178.01 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=200.8
Q ss_pred CCeEEEEEcCCCCEEEEE--ECCCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1036 KGTKTALLQPFSPIVVAA--DENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latg--s~dg~I~VWd~~t--~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
-++.++.|+.... |+++ +.|..+++|.-.. ++....-+... ..-.|+.. .....++++||..|.|+|||+
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g---d~~~Cv~~--~s~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG---DNAFCVAC--ASQSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc---chHHHHhh--hhcceeeeccCcCceeeehhh
Confidence 4588999987765 4444 4677889996432 22211111111 22334443 223479999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ..+ .+.+.+|...|++ +.|+-.+.+|++++..|.|.|..+.++. ...++....+..|.-+.+....
T Consensus 109 ~~----kl~---hr~lkdh~stvt~----v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 109 RA----KLI---HRFLKDHQSTVTY----VDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred HH----HHH---hhhccCCcceeEE----EEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeeccccc
Confidence 54 112 2568899998888 8999899999999999999999999988 6777776656656677555555
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
..+|.+++.+|.|.+||+....+... ....|..+...|+|+|. +..+|++.+.|..|.+||++.. .....+. ..
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~ 250 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRSQ-ASTDRLT-YS 250 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCC-ccceEEEecccceEEEeecccc-cccceee-ec
Confidence 66788899999999999998764332 34568899999999998 7889999999999999999976 4555554 35
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
.+.+.++|.++|.+|++|+..|.|..||+++ .++..+.. |. ..|++++|-+..
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-h~-------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-HD-------ASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-cc-------cceeEEEeeecc
Confidence 6799999999999999999999999999765 45666766 55 679999998764
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.6e-15 Score=154.52 Aligned_cols=277 Identities=13% Similarity=0.198 Sum_probs=196.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCC----------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEE----------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t----------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
|..-+++|.+++|++|..+|.|-+..+.+ ...+..+++|+ ++|..++| ...+|++|++ |.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f----~d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAF----HDDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeee----ehhheeeccC-ceEE
Confidence 44556889999999999999999998753 13455678898 89999999 2467777765 9999
Q ss_pred EEeccCCCCceeEEeeeecc-cCC-----CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000697 1108 IWKDYDQKDKQKLVTAFSSI-QGH-----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l-~~h-----~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
-|..........+..-|+.. .-| .+.|+. +-..|..+.++.++.|+.++-||+++++ ..+++++|.+.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINa----m~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDY- 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINA----MWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDY- 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccce----eEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcce-
Confidence 99886522211111111111 112 234444 5567788888888899999999999999 99999999987
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-------CCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-------QQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-------~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
|.++ ........+++|++||++|+||.++.+ .++.+...+ .-..+|.+++.+. .++++|+. ..+.+
T Consensus 159 vH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~e----dWlvCGgG-p~lsl 231 (325)
T KOG0649|consen 159 VHSV-VGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNE----DWLVCGGG-PKLSL 231 (325)
T ss_pred eeee-eecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccC----ceEEecCC-CceeE
Confidence 9999 444456678899999999999999998 555554331 1235788888764 48888764 57999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCC-C
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-V 1333 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~ 1333 (1348)
|.++.. ++..++.. ...+..+.|.. ..+++++..+.|.-|.+.|..-..+...+ ....+..|+..- +
T Consensus 232 whLrss-e~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s--------~~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 232 WHLRSS-ESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVES--------TACYSASWQTSPIK 299 (325)
T ss_pred EeccCC-CceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCc--------cceeeecccCCceE
Confidence 999987 77777763 45677788864 46777777789999999987766665512 234445554333 4
Q ss_pred EEEEEECCCeEEEc
Q 000697 1334 LLAAGSADACVSIH 1347 (1348)
Q Consensus 1334 ~Latgs~Dg~I~IW 1347 (1348)
+|-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 45555556666654
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=166.05 Aligned_cols=291 Identities=14% Similarity=0.190 Sum_probs=210.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
.|.++|.++.|+.++.+|++|++|..++||+++.. +.+.... .|. ..|.|++| .....+|++|+.+|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~---SNIF~L~F--~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR---SNIFSLEF--DLENRFLYSGERWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccc---cceEEEEE--ccCCeeEecCCCcce
Confidence 46789999999999999999999999999998742 3333222 233 68999999 677889999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee-eecCCCCCCeEE
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN-PIPSSSDCSISA 1184 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~-~l~~~~~~~Vts 1184 (1348)
|...|+++ .+...+ ..-....+.|+. +.-+|.++.+++.+.+|.|.+||.+.....+. .+.+.......+
T Consensus 129 VI~HDiEt--~qsi~V---~~~~~~~~~VY~----m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 129 VIKHDIET--KQSIYV---ANENNNRGDVYH----MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred eEeeeccc--ceeeee---ecccCcccceee----cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 99999976 222222 112223346776 77889999999999999999999886541221 223333444566
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC---CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~---~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
+.+.+....+|++.+..|-+.+||+|.....+..... +......-.++.|+|. |+.+++--....-.+||+-..+
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~--G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS--GNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC--CCeehhhhccCCCEEeeeeccc
Confidence 6577777889999999999999999987644332222 2111223367889999 8888887766667788988754
Q ss_pred cceEEEecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC------C------------------ceEEEEecc
Q 000697 1262 DAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE------G------------------EQLGTIRYH 1311 (1348)
Q Consensus 1262 ~~v~t~~~h------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~------g------------------~~l~~i~~~ 1311 (1348)
.++..+... ...+.+++|-.+. -+++|+.+-.|++|.+. | +.+..++
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-- 354 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-- 354 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe--
Confidence 455444411 1357778887654 49999999999999852 1 1122233
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|.+-++.+.|+|+..+|++.+..+.++||+
T Consensus 355 ------GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 ------GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ------cccccccceeecCCcceEeccchhhheeccc
Confidence 4558899999999999999999999999995
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.9e-16 Score=182.11 Aligned_cols=251 Identities=16% Similarity=0.301 Sum_probs=189.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t--------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|..+|+.++|++-...|++|+.||++.+|+++. -+.+.+|.+|. ++|.|+++ ..++..+++||.||+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v--~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVV--PSNGEHCYSGGIDGT 367 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEe--cCCceEEEeeccCce
Confidence 347899999999999999999999999999942 26788999999 99999999 789999999999999
Q ss_pred EEEEeccCC------CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1106 IRIWKDYDQ------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1106 IrIWdl~~~------~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
|+.|++..+ .....+. ..+.||...++. +++++....|++++.||+++.|+...+. . .++.....
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~---~~l~Ghtdavw~----l~~s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e 438 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLS---GTLLGHTDAVWL----LALSSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKE 438 (577)
T ss_pred eeeeccCCCCCcccccCcchhc---cceeccccceee----eeecccccceeeecCCceEEeeccCCcC-c-cccCCccc
Confidence 999966421 1111122 457889999988 8899999999999999999999988877 4 33333222
Q ss_pred C-CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC--C--CCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1180 C-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH--T--QQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1180 ~-~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~--~--~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
. .-+++.+.+....+.++...-|.--++|...... ...+... . .....+..+.++|. +.+.+++..|+.|++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRF 515 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCC--CCeeEecccCCceec
Confidence 2 1344433333323444444444434444443331 2222111 0 11245778888998 899999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+|..++ .++.....|...++++++.|+|.+|++|+.|+.+++|.+..
T Consensus 516 ~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 516 FDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 999998 89999999999999999999999999999999999999753
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.4e-15 Score=172.27 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=182.1
Q ss_pred CCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCc---EE----------------E--EeeCCCCCCCCeEEEE
Q 000697 1036 KGTKTALLQPF-------SPIVVAADENERIKIWNYEEDT---LL----------------N--SFDNHDFPDKGISKLC 1087 (1348)
Q Consensus 1036 ~~I~sl~fspd-------g~~Latgs~dg~I~VWd~~t~~---~l----------------~--~~~~h~~~~~~ItsL~ 1087 (1348)
..+.|++|... |+++|+|.-+..|.|||+.=.. .. + .-++|. ..|.++.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT---davl~Ls 250 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT---DAVLALS 250 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch---HHHHHHH
Confidence 45678887554 5699999999999999986210 00 0 012455 6777888
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCC
Q 000697 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEK 1166 (1348)
Q Consensus 1088 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t 1166 (1348)
|. ....+.|++||.|.+|++||+.+ +++.. .+..|...|.+ +.|++... .|++|+.|++|.+.|.+.
T Consensus 251 ~n-~~~~nVLaSgsaD~TV~lWD~~~--g~p~~-----s~~~~~k~Vq~----l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 251 WN-RNFRNVLASGSADKTVKLWDVDT--GKPKS-----SITHHGKKVQT----LEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred hc-cccceeEEecCCCceEEEEEcCC--CCcce-----ehhhcCCceeE----EEecCCCceEEEeccccceEEeeeccC
Confidence 83 45678999999999999999977 55553 36778899988 99988755 577778999999999995
Q ss_pred CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1167 ~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
....-..++. .+.|-.++|.+.....++++..||.|+-+|+|.....+...+ .|.+.|.+++++.. ....++++
T Consensus 319 ~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-TPGLLSTA 392 (463)
T ss_pred ccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-CCcceeec
Confidence 4312233333 334888877777788999999999999999998865666554 56699999999987 67889999
Q ss_pred ECCCcEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1247 SQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
+.|+.|++|++.... ..+..-.-.-+...|+++.|+-. ++|.|+..+.++|||+
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 999999999997542 11111111123467888888755 7788888889999994
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-15 Score=170.75 Aligned_cols=241 Identities=17% Similarity=0.296 Sum_probs=183.2
Q ss_pred CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECC
Q 000697 1078 FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEV 1156 (1348)
Q Consensus 1078 ~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~D 1156 (1348)
+..+.|+++.| +|...+|++|+.||+++||.+..... ..+ +.+.-...++.+ .+|.++|. .++++|..
T Consensus 211 ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N--~~l---qS~~l~~fPi~~----a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 211 PSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVN--PKL---QSIHLEKFPIQK----AEFAPNGHSVIFTSGRR 279 (514)
T ss_pred cCcCCceEEEe--cCCCceEEEecCCCcEEEEEecCccC--hhh---eeeeeccCccce----eeecCCCceEEEecccc
Confidence 34479999999 78999999999999999999965222 223 223333455555 88999998 78888899
Q ss_pred CeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1157 SSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1157 g~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
...+.||+.+.+ ..+....++....+... ..++++++|+..+..|.|.+....+++ .+..++. .+.|..++|+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~F-eVShd~~fia~~G~~G~I~lLhakT~e-li~s~Ki----eG~v~~~~fs 353 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERF-EVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKI----EGVVSDFTFS 353 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhhee-EecCCCCeEEEcccCceEEeehhhhhh-hhheeee----ccEEeeEEEe
Confidence 999999998876 12233334443334554 467899999999999999999998887 5555532 3789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEEcC-------CceEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE-------GEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~-~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-------g~~l~~ 1307 (1348)
.+ ++.|++++.+|.|.+||++.. .+++.+....+ .-++++.++++.+||+||..|.|.|||.+ .+++..
T Consensus 354 Sd--sk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 354 SD--SKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred cC--CcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 88 899999999999999999998 78888874322 34677788999999999999999999943 233444
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEEC--CCeEEE
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA--DACVSI 1346 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~--Dg~I~I 1346 (1348)
+.. -...|++|+|++++++||.+|. +..+++
T Consensus 431 ~dN--------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 431 VDN--------LTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhh--------hheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 333 2367999999999999998876 445543
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=1.4e-14 Score=171.17 Aligned_cols=294 Identities=14% Similarity=0.221 Sum_probs=200.4
Q ss_pred cCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCCe
Q 000697 1032 TRFEKGTKTALLQPFSP---IVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGN 1105 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~---~Latgs~dg~I~VWd~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~ 1105 (1348)
..|...|+|+.|-|+.+ ++++|+.|+.|.+|.++.. ..+.++++|. +.++++ . +...+.++ +.|++
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~-----~~~~cv--~-a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC-----KECVCV--V-ARSSVMTCKAADGT 122 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc-----eeEEEE--E-eeeeEEEeeccCce
Confidence 45778999999999887 8999999999999998844 3455566655 455555 2 23333333 78999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeE-EEEECCCeEEEEECCCCc-eeeeeecCCCCCCe
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL-YASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~L-l~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~V 1182 (1348)
+.+||... .+.-+. ..+.-..+.+.. ++++..++ +..+ +.|+.+..|.++.-...+ ..+..+.+|.+. |
T Consensus 123 v~vw~~~~--~e~~~~---~~~rf~~k~~ip--LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DW-I 194 (764)
T KOG1063|consen 123 VSVWDKQQ--DEVFLL---AVLRFEIKEAIP--LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDW-I 194 (764)
T ss_pred EEEeecCC--Cceeee---hheehhhhhHhh--HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchh-h
Confidence 99999843 221122 112211122222 22333343 3333 344567778888655332 156788898887 9
Q ss_pred EEEEEecCCC--CEEEEEeCCCeEEEEECCCCC--------------------eeeEee-------cCCCCCCCCeEEEE
Q 000697 1183 SALTASQVHG--GQLAAGFVDGSVRLYDVRTPD--------------------MLVCST-------RPHTQQVERVVGIS 1233 (1348)
Q Consensus 1183 tsL~~~s~dg--~~LvsGs~DG~VrvwDlr~~~--------------------~~v~~~-------~~~~~h~~~I~sl~ 1233 (1348)
.++++-...+ -++++++.|..||+|.+.-.. .....+ ....||.++|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9996544443 377889999999999886332 000000 12348999999999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCC-c-----ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEE
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHK-D-----AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~-----~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~ 1307 (1348)
|+|. +..|+++|.|.++.+|...+.. - .+....+..+...+..|+|++..+++-+..|-.++|....+..-.
T Consensus 275 W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 275 WHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred Eccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcccee
Confidence 9999 8899999999999999876541 1 111222334568899999999999999999999999833222222
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .+.++|.+.|.+++|+|.|.+|.+.|.|.+-++|
T Consensus 353 ~~----~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 353 QE----PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ec----cccccccccceeeeecCCCCEEEEeccccceeee
Confidence 11 1334577999999999999999999999999886
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.4e-16 Score=194.31 Aligned_cols=249 Identities=18% Similarity=0.299 Sum_probs=194.4
Q ss_pred CCCeEEEEEcCCCCE----EEEEECCCcEEEEECCC---C---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000697 1035 EKGTKTALLQPFSPI----VVAADENERIKIWNYEE---D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~----Latgs~dg~I~VWd~~t---~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1104 (1348)
..+-+.++|.+.|.. ||.|.+||.|.+||... + ..+.+...|. +.|..+.| |...+++|++|++||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~---G~V~gLDf-N~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT---GPVLGLDF-NPFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC---Cceeeeec-cccCCceeeccCCCC
Confidence 356788999888875 88889999999999764 2 4466778888 89999999 234556999999999
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCC-CCe
Q 000697 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSD-CSI 1182 (1348)
Q Consensus 1105 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~-~~V 1182 (1348)
.|.|||+...+..... . -......|.+ +.|+..-.+|+++ +.+|.+.|||++..+ .+..+..+.. ..+
T Consensus 140 eI~iWDlnn~~tP~~~----~-~~~~~~eI~~----lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTP----G-SQAPPSEIKC----LSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHC 209 (1049)
T ss_pred cEEEeccCCcCCCCCC----C-CCCCcccceE----eccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccce
Confidence 9999999652111110 0 1112344555 9999877766665 577899999999998 7777776555 236
Q ss_pred EEEEEecCCCCEEEEEeCCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1183 SALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG---~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
..+.|.+.+...+++++.|. .|.+||+|.....++++ ++|...|.++.|++. +.+++++++.|+.|.+|+..+
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCC-CchhhhcccCCCCeeEecCCC
Confidence 67755555556666666653 69999999877666644 577899999999998 569999999999999999999
Q ss_pred CCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 000697 1260 HKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1260 ~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g 1302 (1348)
+ +.+..+....+.+..+.|+|... +|++.+-||.|.||.+.+
T Consensus 286 g-Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 G-EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred c-eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 8 89999998888999999999887 889999999999999654
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=3.7e-13 Score=158.40 Aligned_cols=287 Identities=26% Similarity=0.494 Sum_probs=215.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeC-CCeEEE
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASC-NGNIRI 1108 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~-~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~-DG~IrI 1108 (1348)
..+...+.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ..+..+.+. .+++. .++..+. |+.+.+
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALS-SPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence 4566889999999999999999999999999999876 6777776441 367777775 56676 5555445 999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
|+... ..... ..+..|...+.. ++|++++..+++++. |+.+++|+..... .+..+..|... |.++.
T Consensus 139 ~~~~~---~~~~~---~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~- 205 (466)
T COG2319 139 WDLST---PGKLI---RTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP-VSSLA- 205 (466)
T ss_pred EEecC---CCeEE---EEEecCcccEEE----EEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCc-eEEEE-
Confidence 99854 01111 346778888876 899999988888875 9999999999877 78888876555 99995
Q ss_pred ecCCCC-EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1188 SQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1188 ~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+.+++. .+++++.|+.|++||.+.+. .... ...+|.... ...|+++ +..+++++.|+.+++||.+.....+..
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGK-LLRS--TLSGHSDSV-VSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCc-EEee--ecCCCCcce-eEeECCC--CCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 447887 55555999999999988655 3331 233444554 3389998 688899999999999999976443555
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEe--ccCCcccccccCCeEEEEEeCCCCEEEEE-ECCC
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIR--YHHPSFMAQKIGSVNCLTFHPYQVLLAAG-SADA 1342 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~--~~h~~f~~~~~~~Vtslafspdg~~Latg-s~Dg 1342 (1348)
+..|...+.++.|+|++..+++++.|+.+.+|+... ....... . |. ..+..+.|.+++..++.+ ..|+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HE-------GPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc-cC-------CceEEEEECCCCCEEEEeecCCC
Confidence 567889999999999888888899999999998553 3333333 3 33 478999994332556655 5788
Q ss_pred eEEEcC
Q 000697 1343 CVSIHS 1348 (1348)
Q Consensus 1343 ~I~IWd 1348 (1348)
.+.+|+
T Consensus 352 ~~~~~~ 357 (466)
T COG2319 352 TIRLWD 357 (466)
T ss_pred cEEeee
Confidence 888885
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.5e-14 Score=162.38 Aligned_cols=294 Identities=15% Similarity=0.264 Sum_probs=209.1
Q ss_pred ccccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED---------TLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~---------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~ 1098 (1348)
.|. ...++.++.|++.+. .|+||+.|..|+||.++.+ +.+..+..|. ..|+++.| +++|++|+
T Consensus 9 ~wH--~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~---~aVN~vRf--~p~gelLA 81 (434)
T KOG1009|consen 9 SWH--DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT---RAVNVVRF--SPDGELLA 81 (434)
T ss_pred Eec--CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc---ceeEEEEE--cCCcCeee
Confidence 355 457899999999887 9999999999999977643 2234566777 89999999 78999999
Q ss_pred EEeCCCeEEEEeccCC-----CC----ceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce
Q 000697 1099 VASCNGNIRIWKDYDQ-----KD----KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1169 (1348)
Q Consensus 1099 tgs~DG~IrIWdl~~~-----~~----~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~ 1169 (1348)
+|+++|.|.+|..... +. ..+.-..++.+.+|...+.. ++|++++..+++++.|..+++||+..++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd----L~Ws~d~~~l~s~s~dns~~l~Dv~~G~- 156 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD----LAWSPDSNFLVSGSVDNSVRLWDVHAGQ- 156 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh----hhccCCCceeeeeeccceEEEEEeccce-
Confidence 9999999999987510 01 01111223667889999998 9999999999999999999999999999
Q ss_pred eeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeE----eecCCCC-----------C----CCCeE
Q 000697 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC----STRPHTQ-----------Q----VERVV 1230 (1348)
Q Consensus 1170 ~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~----~~~~~~~-----------h----~~~I~ 1230 (1348)
....+..|... |..+ .+.+.++++++-+.|...+.+++........ .+....+ | ..-..
T Consensus 157 l~~~~~dh~~y-vqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHY-VQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccc-ccee-ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 77777777665 8888 6778899999988888777777664431110 1101001 1 12345
Q ss_pred EEEEecCCCCCEEEEEEC----CCc-----EEEEEcCCCCcceEEEecCCCCeEEEEEeC------------------CC
Q 000697 1231 GISFQPGLDPAKIVSASQ----AGD-----IQFLDIRNHKDAYLTIDAHRGSLSALAVHR------------------HA 1283 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~----DG~-----I~IWDlr~~~~~v~t~~~h~~~VtsLa~sp------------------dg 1283 (1348)
.++|+|+ |..+++.+. .|. ..+|+-.....+...+.........+.++| .+
T Consensus 235 RlsfTPd--G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPD--GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCC--CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 7788998 888887642 222 345554443455555555555555555543 44
Q ss_pred CEEEEEeCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1284 PIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.++|.++.+ .|.|||... .++..+.. -|-..|+.++|+++|.+|+..|.||...+
T Consensus 313 lvfaiAt~~-svyvydtq~~~P~~~v~n-------ihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 313 LVFAIATKN-SVYVYDTQTLEPLAVVDN-------IHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEEeecc-eEEEeccccccceEEEee-------eeeeeecceeecCCCcEEEEeccCCceEE
Confidence 466777664 799999543 44444333 13378999999999999999999997653
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.8e-15 Score=160.36 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=183.1
Q ss_pred eEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE
Q 000697 1083 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1348)
Q Consensus 1083 ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW 1162 (1348)
-.|+.| ++.|.+|++|+.||.|.|||+.+ .. .. +.+.+|..+|.+ ++|+++|..|++++.|..|.+|
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T--~~--ia---r~lsaH~~pi~s----l~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDT--FR--IA---RMLSAHVRPITS----LCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccc--cc--hh---hhhhccccceeE----EEecCCCCEeeeecCCceeEEE
Confidence 578899 78999999999999999999976 11 11 567899999988 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000697 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1163 Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~ 1242 (1348)
|+..+. +++.+.. +++|+...+.+.+.+.+++.-.+..-.+-++..+...+-.......-...-.+..|++. |++
T Consensus 93 Dl~~gs-~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~y 167 (405)
T KOG1273|consen 93 DLLKGS-PLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKY 167 (405)
T ss_pred eccCCC-ceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC--CCE
Confidence 999999 9988876 45688887777777887777666666666666543222111111111112223357777 999
Q ss_pred EEEEECCCcEEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE----EEEeccCCcccc
Q 000697 1243 IVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL----GTIRYHHPSFMA 1317 (1348)
Q Consensus 1243 LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l----~~i~~~h~~f~~ 1317 (1348)
+++|...|.+.++|..+. +++..++... ..|..+.++..|++|+..+.|+.|+.|++..-.. ......|. +..
T Consensus 168 IitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qD 245 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQD 245 (405)
T ss_pred EEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH-HHH
Confidence 999999999999999998 8888888665 7899999999999999999999999999541100 01110010 000
Q ss_pred -cccCCeEEEEEeCCCCEEEEEEC-CCeEEEcC
Q 000697 1318 -QKIGSVNCLTFHPYQVLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1318 -~~~~~Vtslafspdg~~Latgs~-Dg~I~IWd 1348 (1348)
-+.-.-.+++|+.+|.++++|+. -..++||.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 11223467899999999988876 56788883
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.65 E-value=6.8e-15 Score=160.99 Aligned_cols=290 Identities=15% Similarity=0.200 Sum_probs=206.9
Q ss_pred CCCCCeEEEEEcC----CCC-EEEEEECCCcEEEEECCCCc---EEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEeC
Q 000697 1033 RFEKGTKTALLQP----FSP-IVVAADENERIKIWNYEEDT---LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVASC 1102 (1348)
Q Consensus 1033 ~~~~~I~sl~fsp----dg~-~Latgs~dg~I~VWd~~t~~---~l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs~ 1102 (1348)
.++.+|..++|++ ++. .+++++ ...+.+|...... .++++...+ .......++|+... ...++++||.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d-~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADED-HDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCC-CCcceEEEEEEecCCCCCeeEEeecc
Confidence 4557889999985 233 555555 6689999876433 333333321 12566777775332 2458999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSS 1178 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~---~~~ 1178 (1348)
-|.|+|.|+.. + ++. +.+.+|...|+. +.++|+.. ++++++.|..||+||++++. |+..+- +|.
T Consensus 114 ~GvIrVid~~~--~--~~~---~~~~ghG~sINe----ik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHr 181 (385)
T KOG1034|consen 114 LGVIRVIDVVS--G--QCS---KNYRGHGGSINE----IKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHR 181 (385)
T ss_pred eeEEEEEecch--h--hhc---cceeccCccchh----hhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEeccccccc
Confidence 99999999965 2 222 557899999998 78888764 56667899999999999999 998875 455
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe------------------------eeEeecCCCCCCCCeEEEEE
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM------------------------LVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~------------------------~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
+. |.++ -++.+|..|++++.|.++++|++...+- ....+.+-.-|...|.|+.|
T Consensus 182 de-VLSv-D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 182 DE-VLSV-DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred Cc-EEEE-EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 54 9999 6788999999999999999999983320 00011112246677777777
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCc-------------ceEEEecCCCCeEEE--EEeCCCCEEEEEeCCCcEEEEE
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKD-------------AYLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~-------------~v~t~~~h~~~VtsL--a~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
- |+++++-|-++.|..|.....++ .+..+......|+-+ +|.+.+++||.|...|.|.+||
T Consensus 260 ~----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 260 F----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD 335 (385)
T ss_pred H----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence 5 67999999999999998732112 223333334455544 5567789999999999999999
Q ss_pred cCCceE---EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LEGEQL---GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~l---~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
++.... .++.. + .....|...+|+.++.+|+...+|++|--||
T Consensus 336 L~~~ep~~~ttl~~-s-----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 336 LDNNEPPKCTTLTH-S-----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCCCCccCceEEe-c-----cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 764332 22322 1 2347899999999999999999999998886
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=8.3e-15 Score=157.58 Aligned_cols=250 Identities=20% Similarity=0.255 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCC-EEEEEEC----C---CcEEEEECCCC---------cEEEEee-CCCCCCCCeEEEEEEeeCCCCE
Q 000697 1035 EKGTKTALLQPFSP-IVVAADE----N---ERIKIWNYEED---------TLLNSFD-NHDFPDKGISKLCLVNELDVSL 1096 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~-~Latgs~----d---g~I~VWd~~t~---------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~ 1096 (1348)
.+.|..++-+|..+ .|+++.. . ..+.||.+... +++..+. .+- +.|.|+.| .|++..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav---g~i~cvew--~Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV---GKINCVEW--EPNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh---CceeeEEE--cCCCCe
Confidence 46788888888776 4444432 1 24679987643 2233333 222 58999999 778888
Q ss_pred EEEEeCCCeEEEEeccCCCC-ceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeee
Q 000697 1097 LLVASCNGNIRIWKDYDQKD-KQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1097 L~tgs~DG~IrIWdl~~~~~-~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l 1174 (1348)
+++-. |..|.+|++..+.. ..++.. ..-.++....++ -+|+| .++..+++..|+++..||+++.+ +...+
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~fts----g~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI 209 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTS----GAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSI 209 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecc--cccccccceecc----cccCCCCccceEEEeCCCcEEEEEccchh-hhcch
Confidence 88776 77899999977443 222221 111123333334 68988 55666777789999999999988 78888
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
...++..|..+.+.+....+|++|+.||.|++||.|..+..+. ...+|..+|.++.|+|. ....+++|+.|..|.+
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCc-cceEEEecCCCceeEE
Confidence 8777777999965555566889999999999999998876665 44578899999999998 6788999999999999
Q ss_pred EEcCCCC----------------------------cceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 000697 1255 LDIRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1255 WDlr~~~----------------------------~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~ 1301 (1348)
|....-. ..+.++..|++.|.+++|+.-.+ ++|+-|.||++.|=++.
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9754211 13457778999999999998777 56778999999876543
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=4.8e-14 Score=152.04 Aligned_cols=292 Identities=15% Similarity=0.207 Sum_probs=199.4
Q ss_pred CCCeEEEEEcC--CC-CEEEEEE----CCCcEEEEEC--CCCcEEEEe-eCCCCCCCCeEEEEEEeeCCC---CEEEEEe
Q 000697 1035 EKGTKTALLQP--FS-PIVVAAD----ENERIKIWNY--EEDTLLNSF-DNHDFPDKGISKLCLVNELDV---SLLLVAS 1101 (1348)
Q Consensus 1035 ~~~I~sl~fsp--dg-~~Latgs----~dg~I~VWd~--~t~~~l~~~-~~h~~~~~~ItsL~f~ns~d~---~~L~tgs 1101 (1348)
.-.+.++.|+. +. .+|+.|+ ....|.|-.+ ++++.+..- -.|. -+++.+.|++++.| .+|+|++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCcchhhccc
Confidence 35688888884 33 3788887 3456666644 344444332 1344 68999999765543 3565544
Q ss_pred CCCeEEEEeccCCCCceeEEeee--ecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCce--eeeeecC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAF--SSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQ--MVNPIPS 1176 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~--~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~ 1176 (1348)
+ .+|+|++...+.+.++.... ..-..+..++++ ++|+.-+. +|.+++-|-+..|||++++.. ....+.+
T Consensus 121 D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS----FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 121 D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS----FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred C--eEEEEeccCcCCceehhhhhccCcccccCCcccc----cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 3 69999997543443332111 112234445555 89987655 455567899999999998640 2344556
Q ss_pred CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-CcEEEE
Q 000697 1177 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFL 1255 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G~I~IW 1255 (1348)
|.. .|..+++.....++|++.+.||+||+||+|..+.....++.- ....+...++|++. +-+++++-..| ..|.|.
T Consensus 195 HDK-EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-~~~~pLlRLswnkq-DpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 195 HDK-EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cCc-ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-CCCCcceeeccCcC-CchHHhhhhcCCceEEEE
Confidence 655 499997665556899999999999999999877444444322 22568899999987 77888887665 569999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC-CC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QV 1333 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd-g~ 1333 (1348)
|+|....++..+++|.+.|++++|.|+.. .|++++.|..+.+||+..-....... .-..-...+.|+.+.|++. ..
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeecccCCC
Confidence 99998899999999999999999999855 89999999999999965322111000 0000013478999999954 47
Q ss_pred EEEEEEC
Q 000697 1334 LLAAGSA 1340 (1348)
Q Consensus 1334 ~Latgs~ 1340 (1348)
+++.+..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 8887764
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.61 E-value=4.8e-14 Score=151.80 Aligned_cols=281 Identities=20% Similarity=0.308 Sum_probs=189.0
Q ss_pred EEEEEE----CCCcEEEEECCCC--cEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-------CeEEEEeccCC
Q 000697 1049 IVVAAD----ENERIKIWNYEED--TLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-------GNIRIWKDYDQ 1114 (1348)
Q Consensus 1049 ~Latgs----~dg~I~VWd~~t~--~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-------G~IrIWdl~~~ 1114 (1348)
.+++|. .|..|.+.+++.+ ... +.|..+. +.|..++-.| .+..+|+|+..+ -.+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~a---gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHA---GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCC---cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 445554 4566777666543 222 2344444 6788887742 355666666542 24789999764
Q ss_pred CCc-----eeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC----CCCeEE
Q 000697 1115 KDK-----QKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS----DCSISA 1184 (1348)
Q Consensus 1115 ~~~-----~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~----~~~Vts 1184 (1348)
.+. .+.+ ..+. .+.+.+.+ +.|.|++..+++-. |..|.+|++......+..+.... ....++
T Consensus 104 ~~~S~~~tlE~v---~~Ldteavg~i~c----vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 104 LGQSNSSTLECV---ASLDTEAVGKINC----VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTS 175 (370)
T ss_pred cCccccchhhHh---hcCCHHHhCceee----EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecc
Confidence 333 1222 2222 34455666 99999888887766 77899999987762244433211 112444
Q ss_pred EEEec-CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1185 LTASQ-VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1185 L~~~s-~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
-+|.+ .+++.+++ ..|+++..||+|+.++... ....|...|..+.|+|+ ...+|++|+.||.|+|||.|+.+.+
T Consensus 176 g~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 176 GAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred cccCCCCccceEEE-eCCCcEEEEEccchhhhcc---hhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCcc
Confidence 43433 35666665 4689999999998774443 33467789999999999 7788999999999999999998899
Q ss_pred eEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEc---CCceEEEE-------ec-----c----CCc---cccccc
Q 000697 1264 YLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFSL---EGEQLGTI-------RY-----H----HPS---FMAQKI 1320 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~---~g~~l~~i-------~~-----~----h~~---f~~~~~ 1320 (1348)
+.++.+|...|.++.|+|. ..++.+|+.|..|.+|.. ..+.-..+ .. . .++ -...|.
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 9999999999999999994 668999999999999972 21110000 00 0 000 012466
Q ss_pred CCeEEEEEeCCCCEE-EEEECCCeEEE
Q 000697 1321 GSVNCLTFHPYQVLL-AAGSADACVSI 1346 (1348)
Q Consensus 1321 ~~Vtslafspdg~~L-atgs~Dg~I~I 1346 (1348)
..|.+++|+.-..++ |+-+.||++.|
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEe
Confidence 899999999888764 56677999876
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=1.7e-14 Score=157.97 Aligned_cols=248 Identities=15% Similarity=0.245 Sum_probs=181.4
Q ss_pred CCCCeEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPF----SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspd----g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
++..-..++|+-+ .++||+|+.-|.|+|.|+.+++....+.+|. ..|+.+.+.+ .+.++++++|.|..||+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p-~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHP-DRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC---ccchhhhcCC-CCCcEEEEecCCceEEEE
Confidence 3445556666432 4589999999999999999999999999999 8999999953 456899999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-----eeeee---------ec
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----QMVNP---------IP 1175 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-----~~v~~---------l~ 1175 (1348)
++.+ . .++.-+..+.+|...|.+ ++|+.++.+|+++|.|.+|++|++...+ ++... ++
T Consensus 164 nI~~--~--~Cv~VfGG~egHrdeVLS----vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 164 NIQT--D--VCVAVFGGVEGHRDEVLS----VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred eccC--C--eEEEEecccccccCcEEE----EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 9966 3 344446778899999888 9999999999999999999999998433 00100 00
Q ss_pred -------------CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC-CCCe---------eeEeecCCCCCCCCe--E
Q 000697 1176 -------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR-TPDM---------LVCSTRPHTQQVERV--V 1230 (1348)
Q Consensus 1176 -------------~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr-~~~~---------~v~~~~~~~~h~~~I--~ 1230 (1348)
.|.. .|.|+.|+ |+++++-+-++.|..|... -.+. ....+..+.-....| .
T Consensus 236 t~~~~fp~fst~diHrn-yVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRN-YVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred ccccccccccccccccc-hHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 1111 24444333 6889998999999999872 1111 111111111112233 3
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc-eEEEec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA-YLTIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~-v~t~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
..+|.|- ++.||.|...|.|.+||++....+ ..++.. ....|...+|+.+|.+|+...+|++|--||
T Consensus 312 rf~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 312 RFAFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEeecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4455676 899999999999999999976432 222222 245799999999999999999999999998
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=9.8e-14 Score=169.41 Aligned_cols=272 Identities=16% Similarity=0.213 Sum_probs=193.9
Q ss_pred CcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCccc
Q 000697 1057 ERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1135 (1348)
Q Consensus 1057 g~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~ 1135 (1348)
+.+.||+++.. ..-..+... ..|++++|++ .+..+++.|..+|.|.+||+...........+ .....|..++.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeE
Confidence 47999999865 333344433 4899999963 57788999999999999999773332111101 11234566665
Q ss_pred ccceEEEEecCCCe--EEEEECCCeEEEEECCCCceeeeee----cC------CCCCCeEEEEEecCCCCEEEEEeCCCe
Q 000697 1136 CSNVVVDWQQQSGY--LYASGEVSSIMLWDLEKEQQMVNPI----PS------SSDCSISALTASQVHGGQLAAGFVDGS 1203 (1348)
Q Consensus 1136 si~~~v~ws~~~~~--Ll~gg~Dg~IrVWDl~t~~~~v~~l----~~------~~~~~VtsL~~~s~dg~~LvsGs~DG~ 1203 (1348)
. +.|.++... +++++.||.|..|+++.-..++... .. .....++++.+...+.+.|+.|+.+|.
T Consensus 296 ~----vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 296 A----VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred E----EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 5 888776555 9999999999999887543111111 11 223358899888888899999999999
Q ss_pred EEEEECCCCCeee----EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1204 VRLYDVRTPDMLV----CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1204 VrvwDlr~~~~~v----~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
|..-+....+... .....+..|.+.|+++.++|- ....+.+++ |.+|+||.......++..+..+...|++++|
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF-~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF-YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCC-ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 9885444332111 222244567899999999998 344444544 9999999988333788888888888999999
Q ss_pred eCCCC-EEEEEeCCCcEEEEEcC---CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1280 HRHAP-IIASGSAKQLIKVFSLE---GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1280 spdg~-~LasgS~Dg~I~Vwd~~---g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
||..+ +|+++..||.|.+||+. -+++.+.+. + ....+.+.|++.|+.|++|...|++.+|+
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-~-------~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-C-------SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccc-c-------ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 99876 78889999999999954 233444433 2 25677888999999999999999999884
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=2.1e-12 Score=151.92 Aligned_cols=276 Identities=25% Similarity=0.505 Sum_probs=206.1
Q ss_pred CeEEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEec
Q 000697 1037 GTKTALL-QPFSP-IVVAADE-NERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1037 ~I~sl~f-spdg~-~Latgs~-dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl 1111 (1348)
.+..+.+ ++++. .++..+. |+.+.+|+... ......+..|. ..|.++.| ++++..+++++. |+.+++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS---ESVTSLAF--SPDGKLLASGSSLDGTIKLWDL 185 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc---ccEEEEEE--CCCCCEEEecCCCCCceEEEEc
Confidence 5666666 78887 5555444 99999999998 78888899998 89999999 778888888886 999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeee-eecCCCCCCeEEEEEec
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~-~l~~~~~~~VtsL~~~s 1189 (1348)
.. +... ..+.+|...+.+ ++|++++..++++ +.|+.|++||...+. .+. .+..|... + +..+.
T Consensus 186 ~~--~~~~-----~~~~~~~~~v~~----~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~--~~~~~ 250 (466)
T COG2319 186 RT--GKPL-----STLAGHTDPVSS----LAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDS-V--VSSFS 250 (466)
T ss_pred CC--CceE-----EeeccCCCceEE----EEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcc-e--eEeEC
Confidence 65 2222 335668888887 8899888745555 899999999988777 666 57776665 2 22567
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID- 1268 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~- 1268 (1348)
+++..+++++.|+.+++||.+......... .+|...|.++.|.|. +..+++++.|+.+++||.... .......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 324 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPD--GKLLASGSSDGTVRLWDLETG-KLLSSLTL 324 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCC--CCEEEEeeCCCcEEEEEcCCC-ceEEEeee
Confidence 788889999999999999999776423332 466789999999997 778888999999999999877 4444444
Q ss_pred -cCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCce-EEEEeccCCcccccccCCeEEEEEeCCCCEEEE-EECCCeE
Q 000697 1269 -AHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA-GSADACV 1344 (1348)
Q Consensus 1269 -~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~~g~~-l~~i~~~h~~f~~~~~~~Vtslafspdg~~Lat-gs~Dg~I 1344 (1348)
.|...+..+.+.+++..++.+ ..|+.+.+|+..... ...... . ..+..+.+.+ ...... +..++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-H--------SNVLSVSFSP-DGRVVSSGSTDGTV 394 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-C--------ceEEEEEECC-CCCEEEEecCCCce
Confidence 788789999994332455555 688999999965444 222221 1 2288899988 544444 6779999
Q ss_pred EEcC
Q 000697 1345 SIHS 1348 (1348)
Q Consensus 1345 ~IWd 1348 (1348)
.+|+
T Consensus 395 ~~~~ 398 (466)
T COG2319 395 RLWD 398 (466)
T ss_pred EEEe
Confidence 9985
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3.4e-15 Score=178.30 Aligned_cols=272 Identities=17% Similarity=0.278 Sum_probs=209.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
|-+.|+|+.|...|.++++|++|..++||..+++.++.+..+|. +.|+.++. +.+..++++++.|..|++|.+.+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc---cccchhcc--chhhhhhhhcccCceEEEEecCC
Confidence 45789999999999999999999999999999999999999999 99999999 67788999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee---eecCCCCCCeEEEEEecC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN---PIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~---~l~~~~~~~VtsL~~~s~ 1190 (1348)
+... ..+.+|++.|++ ++|+|-. +++.||++++||.+-.- .+. ......+..+.++ .+-.
T Consensus 264 --~~pv-----svLrghtgavta----iafsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~-~~~~ 326 (1113)
T KOG0644|consen 264 --GAPV-----SVLRGHTGAVTA----IAFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSI-LFEN 326 (1113)
T ss_pred --CchH-----HHHhccccceee----eccCccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeee-eccc
Confidence 4332 458999999998 8888865 67899999999988222 111 1122223335555 4556
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
.+.-+.+|+.|+.-+.|...... .|...+.-+..+.+ ...+.+++-.+-.+++|++.++ ...+...+|
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd-~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~gh 394 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSD-LSSIVVTARNDHRLCVWNLYTG-QLLHNLMGH 394 (1113)
T ss_pred cccccccccCCcccccchhhHhh----------hhccceEEEecccc-ccccceeeeeeeEeeeeecccc-hhhhhhccc
Confidence 78889999999998888765322 11111222222222 2356777777888999999998 788899999
Q ss_pred CCCeEEEEEeCCCC-EEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1271 RGSLSALAVHRHAP-IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...+..+.+||-.. +..+++.||...||| ..|.++......| +.+..-+|+++|..++....-|.+.|.
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh--------~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH--------GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc--------ceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999999776 455789999999999 5677666544312 567788999999888877777777764
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=1.9e-13 Score=169.74 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=198.2
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1034 FEKGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
|...+..++.++.. .++++|+.||+|+|||...- +...++.- .++++.++.++ ..++.+++|+.||.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~--~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMC--GNGDQFAVSTKDGS 1121 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEec--cCCCeEEEEcCCCe
Confidence 34566677776655 89999999999999998642 11122332 23688888884 68899999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCc-ccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeec--CCCCC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPG-VRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDC 1180 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~-V~si~~~v~ws~~~--~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~--~~~~~ 1180 (1348)
|++.++.............+....+..+ +.+ ..+|.... ..++.+...+.|..||++... ...+++ ..++.
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~---m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS---MHAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGL 1197 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEE---eecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccccc
Confidence 9999997633333333333333333332 222 12333222 256666788999999998776 444443 33444
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC-CCEEEEEE--CCCcEEEEEc
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD-PAKIVSAS--QAGDIQFLDI 1257 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~-g~~LaSgs--~DG~I~IWDl 1257 (1348)
|+++ +.++.++++++|+..|.+-+||+|-+. .+..+ .+ .+..+|+.+..+|... ....++++ ..+.|.+|++
T Consensus 1198 -vTSi-~idp~~~WlviGts~G~l~lWDLRF~~-~i~sw-~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1198 -VTSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV-PILSW-EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred -eeEE-EecCCceEEEEecCCceEEEEEeecCc-eeecc-cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 9999 778899999999999999999999887 56655 33 3448899999888721 13444444 5788999999
Q ss_pred CCCCcceEEEecCC-------------------CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE------------
Q 000697 1258 RNHKDAYLTIDAHR-------------------GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG------------ 1306 (1348)
Q Consensus 1258 r~~~~~v~t~~~h~-------------------~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~------------ 1306 (1348)
.++ ....++-... -......+...+.++.+|+.|+.|+.||...-...
T Consensus 1273 ~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred ccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 987 4444443220 11223344445679999999999999995322111
Q ss_pred ---------EEec----------------------------cCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1307 ---------TIRY----------------------------HHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1307 ---------~i~~----------------------------~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
.+.+ +.......|..+|+++++.... .+|++++.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0000 0000022466788888876544 6889999999999994
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=7.9e-14 Score=161.94 Aligned_cols=112 Identities=16% Similarity=0.285 Sum_probs=96.8
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC------cceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEc
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~------~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~ 1300 (1348)
.|+.++|.|- +...|++++.||.|++|.+..++ .+-..+.+|...|+++.|||- ..+|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3567778776 67789999999999999987553 566788899999999999995 558999999999999995
Q ss_pred -CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1301 -EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1301 -~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++....+.+ |. +.|.+++|+|+|+.+|+.+.||+|+||+
T Consensus 708 ~~~~~~~~l~g-Ht-------dqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYSRLVG-HT-------DQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhheecc-Cc-------CceeEEEECCCCcceeeeecCceEEEeC
Confidence 5667777877 65 8999999999999999999999999985
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=151.86 Aligned_cols=287 Identities=17% Similarity=0.210 Sum_probs=194.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~-h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.+.+.++++.|..++. |.+|...|.|.+|++++...+..++. +. ..|+.+.-+ .+..|.+-+.|+.+.+|++
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~---~~it~lq~~---p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR---LFITNLQSI---PNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc---ceeeceeec---CCcchhhcCCCceEEEEEc
Confidence 4557899999987765 88999999999999999888888884 44 678888874 3377899999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceE-EEEecCCC---eEEEE-E--CCCeEEEEECCCCceeeeeecC---CCCCC
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQQSG---YLYAS-G--EVSSIMLWDLEKEQQMVNPIPS---SSDCS 1181 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~-v~ws~~~~---~Ll~g-g--~Dg~IrVWDl~t~~~~v~~l~~---~~~~~ 1181 (1348)
.. +.... .|.-.+++++++ ....+.++ .++.. + .|- +.+-|..... .+..... ...+.
T Consensus 85 a~--s~~i~--------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~t-qv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 85 AY--SAFIS--------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTT-QVQIADDSERSKLGS 152 (323)
T ss_pred cC--cceEE--------EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccc-eeEccCchhccccCc
Confidence 54 22111 122223332221 01111111 22222 1 111 3333333222 2222221 11223
Q ss_pred eEEEEEecCCCC--EEEEEeCCCeEEEEECCCCCeeeEee------cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1182 ISALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCST------RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1182 VtsL~~~s~dg~--~LvsGs~DG~VrvwDlr~~~~~v~~~------~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
+.|..+...++. ++++|.++|.|.+||+.++...+... .....|+.+|.++.+.+. ...=++|+.+..+.
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLV 230 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccce
Confidence 666642222333 56789999999999999875332211 123467899999999876 55556778888899
Q ss_pred EEEcCCCC---cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1254 FLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1254 IWDlr~~~---~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
.|.+.... ..-.++....-.|..+.+-||++++|+++.|++|+||+ -+...+..+++ |. +.|++++|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hs-------agvn~vAfs 302 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HS-------AGVNAVAFS 302 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hh-------cceeEEEeC
Confidence 99887431 11122333345689999999999999999999999999 67899999999 65 899999999
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 000697 1330 PYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IWd 1348 (1348)
|+..++|+++.|++|.+|+
T Consensus 303 pd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWK 321 (323)
T ss_pred CCCchhhhccCCceEEeee
Confidence 9999999999999999996
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.58 E-value=4.4e-14 Score=154.14 Aligned_cols=246 Identities=13% Similarity=0.194 Sum_probs=181.3
Q ss_pred CCeEEEEEc-------CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1036 KGTKTALLQ-------PFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fs-------pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~--~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
..|...+|- |+..++++.+.+.-|.+||.-+|+...++.+-+ ..-..-.+++| ++||..|++|. ...|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F--s~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF--SPDGEQLFAGY-KRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe--cCCCCeEeecc-cceE
Confidence 445555553 566799999999999999999999988877532 11234568999 78999999775 5689
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL 1185 (1348)
+|+|+..........+. +........++..+++|+|... .+++|+....+-||.-.... ++..+.+|.++ |+.+
T Consensus 182 rvFdt~RpGr~c~vy~t---~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gG-vThL 256 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTT---VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGG-VTHL 256 (406)
T ss_pred EEeeccCCCCCCcchhh---hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCC-eeeE
Confidence 99999553333332211 1111222222333489998766 67777788888888877777 78888888776 9999
Q ss_pred EEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1186 TASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.+.++|+.|.+|.. |-.|..||+|....++..+..+.+.+..=.-....|. +++|++|+.||.|++||+...+..+
T Consensus 257 -~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 257 -QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred -EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCCCCcc
Confidence 56688999988876 7789999999877666555444432233333445677 9999999999999999999866788
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
..+..|...++.++++|--+++|+++..
T Consensus 334 sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccccceecCcccceeeeccCc
Confidence 8889999999999999998899988754
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.9e-15 Score=167.33 Aligned_cols=295 Identities=16% Similarity=0.252 Sum_probs=217.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|.++|..+.|+..|..|++|++|..|.+|||..++....|. +|. ..|..-.|++..+...+++++.||.|++=.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~---~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC---NNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc---cchhhhhccCCCCCcCceeccccCceeeee
Confidence 3477999999999999999999999999999999988777665 566 678788898888888999999999999987
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCCC--CCeEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSD--CSISA 1184 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~---~~~~--~~Vts 1184 (1348)
+... +..+-. +.+..|.+.|.. ++..|+.. .++++|.|+.+.-+|++... ....+. .+.. -...+
T Consensus 216 i~~t-~~~e~t---~rl~~h~g~vhk----lav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 216 ILET-GYVENT---KRLAPHEGPVHK----LAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYT 286 (559)
T ss_pred eccc-cceecc---eecccccCccce----eeecCCCCCcccccccccceeeeeeccCC-ccceeeeeccCCccceeeee
Confidence 7542 222222 456778888877 55556654 47778999999999998775 333222 2222 13567
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCee-----eEeecCC---CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDML-----VCSTRPH---TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1256 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~-----v~~~~~~---~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWD 1256 (1348)
++..+.+.+.+++|+.|-.+++||.|.-... +..+..+ ......|++++++.+ +..+.++-.|-.|.++.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC--ccceeeeecccceEEec
Confidence 7555556679999999999999999854321 1111111 122357999999987 66666677777899995
Q ss_pred cCCCC-----------cce-EEEecCCC--CeEEEEE-eCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCccccccc
Q 000697 1257 IRNHK-----------DAY-LTIDAHRG--SLSALAV-HRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1257 lr~~~-----------~~v-~t~~~h~~--~VtsLa~-spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~ 1320 (1348)
-..+. ..+ ..+++|.. .|.++-| -|...++++||.-|.|.||+. +++.+..+++ . .
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg-D-------r 436 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG-D-------R 436 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc-c-------c
Confidence 43221 112 23778854 5667765 567889999999999999994 5555555555 2 2
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|+||.-||.-.+||++|-|..|+||.
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeec
Confidence 4899999999999999999999999994
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=160.65 Aligned_cols=242 Identities=19% Similarity=0.283 Sum_probs=178.6
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe-
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY- 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~- 1149 (1348)
..+.+|. +.|.+|.. ++.|.+|++|+.||+||||.+.+ +.+... +. ....|.+ ++|+|.+..
T Consensus 394 lvyrGHt---g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~T--gRcvr~-----~~-~d~~I~~----vaw~P~~~~~ 456 (733)
T KOG0650|consen 394 LVYRGHT---GLVRSISV--DPSGEWLASGSDDGTVRIWEIAT--GRCVRT-----VQ-FDSEIRS----VAWNPLSDLC 456 (733)
T ss_pred eeEeccC---CeEEEEEe--cCCcceeeecCCCCcEEEEEeec--ceEEEE-----Ee-ecceeEE----EEecCCCCce
Confidence 4578888 89999999 78999999999999999999977 433221 11 2335555 899887653
Q ss_pred EEEEECCCeEEEEECCCCc---------------------------------e---eeeeecCCCCCCeEEEEEecCCCC
Q 000697 1150 LYASGEVSSIMLWDLEKEQ---------------------------------Q---MVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~---------------------------------~---~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
+++....+.+.|-+..-+. + -+.....| ...|..| .++..|+
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~v-tWHrkGD 534 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQV-TWHRKGD 534 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCcccee-eeecCCc
Confidence 2333333334444322110 0 01111122 3348888 5567899
Q ss_pred EEEEEeCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1194 QLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1194 ~LvsGs~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+|++...+ ..|.|+++.... ... .+....+.|.++.|+|. ..+|++++. ..|+|||+... ..++.+...
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~-sQ~---PF~kskG~vq~v~FHPs--~p~lfVaTq-~~vRiYdL~kq-elvKkL~tg 606 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRK-SQS---PFRKSKGLVQRVKFHPS--KPYLFVATQ-RSVRIYDLSKQ-ELVKKLLTG 606 (733)
T ss_pred eEEEeccCCCcceEEEEeccccc-ccC---chhhcCCceeEEEecCC--CceEEEEec-cceEEEehhHH-HHHHHHhcC
Confidence 99987764 468899987665 222 33333578999999999 888888775 57999999976 777777777
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
...|..+++||.|.-|+.|+.|+.+..||+ ..+..++++. |. ..+++++||+.-.++++|+.||++.||
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~-------~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HE-------KAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hh-------hhhhhhhhccccceeeeecCCCcEEEE
Confidence 778999999999999999999999999995 4668888887 65 789999999999999999999999886
No 182
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.9e-14 Score=160.87 Aligned_cols=275 Identities=16% Similarity=0.240 Sum_probs=210.2
Q ss_pred cccCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1030 WDTRF-EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1030 Wd~~~-~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
++... ..++..+.++.+|.+|+.|+..|.|-.+||.++++...+.... .|.++.|. .+..+++++ ....+.|
T Consensus 123 f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~L--Hneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 123 FDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFL--HNEQFFAVA-QKKYVYV 195 (545)
T ss_pred ccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhh--cchHHHHhh-hhceEEE
Confidence 34443 4789999999999999999999999999999999998887766 89999994 566677766 5568999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
||... .++ ..+..| ..|.. +.|-|..-.|++++..|.++.-|+.+++ .+..+....+. +..| ..
T Consensus 196 YD~~G----tEl----HClk~~-~~v~r----LeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~-~~vm-~q 259 (545)
T KOG1272|consen 196 YDNNG----TEL----HCLKRH-IRVAR----LEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGR-TDVM-KQ 259 (545)
T ss_pred ecCCC----cEE----eehhhc-Cchhh----hcccchhheeeecccCCceEEEeechhh-hhHHHHccCCc-cchh-hc
Confidence 99743 222 223333 23444 7888877677777899999999999999 99999887665 6667 67
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
+|.+..+-+|..+|+|.+|.....+.+++.+ .|.++|.+|++.++ |++++|.+.|..++|||+|+.. .+.++.
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiL----cH~g~V~siAv~~~--G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~ 332 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----CHRGPVSSIAVDRG--GRYMATTGLDRKVKIWDLRNFY-QLHTYR 332 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHH----hcCCCcceEEECCC--CcEEeecccccceeEeeecccc-ccceee
Confidence 7888899999999999999999888776655 46699999999999 9999999999999999999884 444544
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCce--EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1269 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
. ......+++|..| +||.| ....|.||. ..+.. -..... |. -.+.|..+.|.|....|..|...|.
T Consensus 333 t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~-----~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HR-----CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred c-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hc-----cCcccccceeccHHHeeeccccCCc
Confidence 3 4467788888655 44444 335799997 44322 111111 22 3358999999999988888766554
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1e-13 Score=161.20 Aligned_cols=253 Identities=21% Similarity=0.338 Sum_probs=182.3
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcccccceEEEEecCCCeE
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L 1150 (1348)
++..|. +.|..+.| .+....|++++.||+|++|++.... .....+...-++.+|.++|.| ++....+.++
T Consensus 289 tl~s~~---d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~----v~v~~n~~~~ 359 (577)
T KOG0642|consen 289 TLRSHD---DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLC----VVVPSNGEHC 359 (577)
T ss_pred eeecch---hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEE----EEecCCceEE
Confidence 455666 78999999 6788899999999999999993311 112223344678899999988 8888999999
Q ss_pred EEEECCCeEEEEECCCCc---------eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC
Q 000697 1151 YASGEVSSIMLWDLEKEQ---------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1348)
Q Consensus 1151 l~gg~Dg~IrVWDl~t~~---------~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~ 1221 (1348)
++||-||+|+.|++.... .....+.+|.+. |+.+ +++.....|++++.||+|+.|+...... +++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l-~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLL-ALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccc-eeee-eecccccceeeecCCceEEeeccCCcCc--cccCC
Confidence 999999999999654211 123456677666 9999 6777888899999999999999887764 33322
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-------CCCCeEEEEEeCCCCEEEEEeCCCc
Q 000697 1222 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-------HRGSLSALAVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1222 ~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-------h~~~VtsLa~spdg~~LasgS~Dg~ 1294 (1348)
... .+.-.++.+-.. .-...++...-|.-.++|+... ..+..+.. ....+..+.+||.+.+.+++..|+.
T Consensus 436 ~~e-~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKE-HGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred ccc-cCCcceEeeccc-hhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 222 234455555433 1122333333333334444333 22333321 1245788999999999999999999
Q ss_pred EEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+++| .+|+.+..... |. ..++++++.|+|.+|++++.||.|++|+
T Consensus 513 Ir~~dn~~~~~l~s~~a-~~-------~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVA-HK-------DSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eecccccccccchheee-cc-------ceecceeecCCCceEEeecCCceeehhh
Confidence 99999 77888888777 54 7899999999999999999999999995
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.52 E-value=1.1e-12 Score=160.37 Aligned_cols=257 Identities=11% Similarity=0.183 Sum_probs=175.4
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE--EEEe----eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL--LNSF----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~--l~~~----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
..|.+++|+|+.+ +++.|..+|.|.+||+..+.. ...+ ..|. ..++.+.|..+..+.-+++++.||.|..
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~---~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS---EPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC---cCeEEEEEeccCCCCceEEEecCCcEee
Confidence 6899999999876 677778999999999987654 2222 2345 7899999976666677999999999999
Q ss_pred EeccCCCCceeEE-eeeecccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCce-e------eeeecCCCC
Q 000697 1109 WKDYDQKDKQKLV-TAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQ-M------VNPIPSSSD 1179 (1348)
Q Consensus 1109 Wdl~~~~~~~~lv-s~~~~l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~-~------v~~l~~~~~ 1179 (1348)
|++.......+.. .......+....-...+++++|.+... .+++|+++|.|..-+....+. . +..+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~- 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI- 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC-
Confidence 9875421111110 000000011111112234588876554 577778899988744333220 1 22333444
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1259 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~ 1259 (1348)
++|+++.+.+-....|.+++ |.+|++|...........+ ..+...|++++|+|. ....|+++..||.+.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSpt-rpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPT-RPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh---hhccceeeeeEEcCc-CceEEEEEcCCCceehhhhhc
Confidence 45999944433344455554 9999999988433333333 234467999999998 678999999999999999975
Q ss_pred CC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1260 HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1260 ~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.. .++.+...+....+.+.|++.|++|++|...|++.+|++.
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 32 5666666667778888999999999999999999999974
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.6e-11 Score=144.88 Aligned_cols=270 Identities=14% Similarity=0.205 Sum_probs=173.6
Q ss_pred EEEECCCcEEEEECCC-Cc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEeccCCCCceeEEeeeec
Q 000697 1051 VAADENERIKIWNYEE-DT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1051 atgs~dg~I~VWd~~t-~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
++...++.|++||+.+ ++ .+..+... .....+.+ ++++++|++++ .++.|.+|++.. ++....+..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~--- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAE--- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC----CCCccEEE--CCCCCEEEEEECCCCcEEEEEECC-CCceEEeee---
Confidence 3446789999999964 33 44555432 35677888 78999987765 578899999862 344333311
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCc---eeeeeecCCCCCCeEEEEEecCCCCEEE-EEeCC
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLA-AGFVD 1201 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~D 1201 (1348)
.. ...... .+.++++++.+++++ .++.|.+||+.+.. ..+..+... . ...++ .+++++++++ +...+
T Consensus 76 ~~-~~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~-~~~~~-~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 76 SP-LPGSPT----HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-E-GCHSA-NIDPDNRTLWVPCLKE 147 (330)
T ss_pred ec-CCCCce----EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-C-cccEe-EeCCCCCEEEEeeCCC
Confidence 11 111222 388999999999986 58899999997432 022222221 2 24555 4678888775 55567
Q ss_pred CeEEEEECCCCCeeeE----eecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCC---cceEEEecCC--
Q 000697 1202 GSVRLYDVRTPDMLVC----STRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHK---DAYLTIDAHR-- 1271 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~----~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~---~~v~t~~~h~-- 1271 (1348)
+.|.+||+.+...+.. ...... ......+.|+|+ +++++++.. ++.|.+||+.... +.+..+..+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 9999999986432211 011111 244678999999 888877776 8999999997421 2233333221
Q ss_pred ----CCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCe
Q 000697 1272 ----GSLSALAVHRHAPIIASGS-AKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1343 (1348)
Q Consensus 1272 ----~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~ 1343 (1348)
.....+.++|++++++++. .++.|.+|+++ +..+..+ . +.. .......+.|+|+|++|++++. +++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~-~~~----~~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-G-HQP----TETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-E-EEe----ccccCCceEECCCCCEEEEEEccCCc
Confidence 1234688999999888875 47899999963 3322222 2 110 0124567899999999998876 899
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
|.+|+
T Consensus 298 v~v~~ 302 (330)
T PRK11028 298 ISVYE 302 (330)
T ss_pred EEEEE
Confidence 99983
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=6.1e-13 Score=152.85 Aligned_cols=265 Identities=14% Similarity=0.165 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEE------eeCCCCEEEEEeCCCeE
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV------NELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~------ns~d~~~L~tgs~DG~I 1106 (1348)
++..-+.|+.|+..+..+.+++ |..+.+|.--+...+....... +-|....+. -......++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~---df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPD---DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCc---ccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3445567888998888877777 5555555433222222221111 111111110 01233578888999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.|-+-. ++.+ +.+..|.+.+.+ -.|+++|.-|+++|.||.|++|.... . ++..-.....+|.|++
T Consensus 88 ~il~k~---~rVE-----~sv~AH~~A~~~----gRW~~dGtgLlt~GEDG~iKiWSrsG-M--LRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 88 VILNKS---ARVE-----RSISAHAAAISS----GRWSPDGAGLLTAGEDGVIKIWSRSG-M--LRSTVVQNEESIRCAR 152 (737)
T ss_pred EEeccc---chhh-----hhhhhhhhhhhh----cccCCCCceeeeecCCceEEEEeccc-h--HHHHHhhcCceeEEEE
Confidence 887642 2222 446788888877 89999999999999999999998543 2 3333333445699995
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
|.+...+.+.+.+ |.+.+=.+.....++ . .+.|.+-|.++.|++. .+.+++|++|-..++||-. +..+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i-~---WkAHDGiiL~~~W~~~--s~lI~sgGED~kfKvWD~~--G~~Lf~ 222 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKII-R---WRAHDGLVLSLSWSTQ--SNIIASGGEDFRFKIWDAQ--GANLFT 222 (737)
T ss_pred ECCCCCceEEecC--CeEEEeeccccccee-E---EeccCcEEEEeecCcc--ccceeecCCceeEEeeccc--Cccccc
Confidence 5544444554433 456665555554333 2 3467799999999999 9999999999999999987 457777
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1267 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1267 ~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
-..|+.+|++++|.|+ +.++.||.+ +.+ +.. .+.+.|..++|++||..+++|...|.+.+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~~-------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYN-TAR-----------FSS-------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeee-eee-----------ecC-------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 8889999999999999 777777743 232 222 24589999999999999999999887753
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.49 E-value=1e-12 Score=146.83 Aligned_cols=216 Identities=15% Similarity=0.268 Sum_probs=162.3
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC-e
Q 000697 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-Y 1149 (1348)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~-~ 1149 (1348)
-.+.+|. +.|..+.|.+ .++..|++||.|.+|.||++....-...+......+.+|...|-. +.|+|... .
T Consensus 75 P~v~GHt---~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~----V~wHPtA~NV 146 (472)
T KOG0303|consen 75 PLVCGHT---APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL----VQWHPTAPNV 146 (472)
T ss_pred CCccCcc---ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE----Eeecccchhh
Confidence 3467888 8999999964 577899999999999999997643334444445678899988876 99999865 4
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
|+++|.|.+|.+||+.+++ .+.++. |.+- |.++ .++.+|.+|++++.|..|||||.|+++ .+..-..|.|+ .-
T Consensus 147 Llsag~Dn~v~iWnv~tge-ali~l~-hpd~-i~S~-sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~--k~ 219 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGE-ALITLD-HPDM-VYSM-SFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGA--KP 219 (472)
T ss_pred HhhccCCceEEEEeccCCc-eeeecC-CCCe-EEEE-EeccCCceeeeecccceeEEEcCCCCc-EeeecccccCC--Cc
Confidence 6667899999999999999 777777 6665 9999 778899999999999999999999998 55444455443 23
Q ss_pred EEEEEecCCCCCEEEEEE---CCCcEEEEEcCCCCcceE--EEecCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCc
Q 000697 1230 VGISFQPGLDPAKIVSAS---QAGDIQFLDIRNHKDAYL--TIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs---~DG~I~IWDlr~~~~~v~--t~~~h~~~VtsLa~spdg~~L-asgS~Dg~I~Vwd~~g~ 1303 (1348)
..+.|-.+ |.++.+|. .+..+-+||..+..+++. ++.. .+.|.-=-+.++..++ ++|-.|+.|+-|.++.+
T Consensus 220 ~Raifl~~--g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 220 ARAIFLAS--GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEecc--CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44556665 77666654 467799999887655543 3333 3345444567776654 56778999999997766
Q ss_pred e
Q 000697 1304 Q 1304 (1348)
Q Consensus 1304 ~ 1304 (1348)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 5
No 188
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6e-12 Score=146.26 Aligned_cols=277 Identities=16% Similarity=0.272 Sum_probs=197.1
Q ss_pred CCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1034 FEKGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~-Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
+....+.|..+|||+| +|+|...-.|+|||+.+-.+ .|.-|.. ..+..+..+ +.|-..++--..|.+|.+..-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlD--ae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLD--AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeeccc--ccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 4456788999999995 56777899999999975432 3444431 334343333 4565666666777777765542
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
. .. +.-.|...+..++++.-+.-|+++|....|+-++++.+. .+..+....+. ++++ ..++..
T Consensus 125 G---~h-----------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~~-lN~v-~in~~h 187 (703)
T KOG2321|consen 125 G---RH-----------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSGE-LNVV-SINEEH 187 (703)
T ss_pred C---ee-----------eeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-ccccccccccc-ceee-eecCcc
Confidence 2 10 111222223336676667778888877889999999999 88888876554 8888 566778
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCC---CCCC-----CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPH---TQQV-----ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~---~~h~-----~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.+|++|+.||.|..||.|+... +..+... ..|. ..|+++.|+.+ |-.+++|+.+|.|.|||+|.. +++
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~-~pl 263 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRAS-KPL 263 (703)
T ss_pred ceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccC-Cce
Confidence 8999999999999999998763 2222111 1122 34999999987 999999999999999999987 454
Q ss_pred EEE-ecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1265 LTI-DAHRGSLSALAVHRH--APIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1265 ~t~-~~h~~~VtsLa~spd--g~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
..- .+..-+|..+.|.+. +..+++. ....++||| .+|+....+.+ . ..++.+++-|++.++.++-.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t--------~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-T--------SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-c--------CCcCceeeecCCceEEEecC
Confidence 332 233557889999776 4456654 346789999 88999988886 2 45999999999999999987
Q ss_pred CCeEEE
Q 000697 1341 DACVSI 1346 (1348)
Q Consensus 1341 Dg~I~I 1346 (1348)
++.+..
T Consensus 334 ~~~m~~ 339 (703)
T KOG2321|consen 334 SSKMHT 339 (703)
T ss_pred CCccee
Confidence 776544
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.1e-11 Score=138.51 Aligned_cols=235 Identities=25% Similarity=0.320 Sum_probs=170.5
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--CCe
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSS 1158 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--Dg~ 1158 (1348)
..+..+.| .++...|.+|+.|| .++|+.... ++ . .......+. .+-+-|+ ...++..+. -+.
T Consensus 6 ~ti~~~~~--Nqd~~~lsvGs~~G-yk~~~~~~~-~k--~------~~~~~~~~~--IvEmLFS--SSLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 6 PTINFIGF--NQDSTLLSVGSKDG-YKIFSCSPF-EK--C------FSKDTEGVS--IVEMLFS--SSLVAIVSIKQPRK 69 (391)
T ss_pred cceeeeee--ccceeEEEccCCCc-eeEEecCch-HH--h------hcccCCCeE--EEEeecc--cceeEEEecCCCce
Confidence 35666677 78888999999997 577776431 11 0 011111111 1113343 345555543 356
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
+++++.++.. .+..+.-.+ .|.++. . +.+.|++.-.+ .|+|||+++.+ +..++.....+...+.++++++.
T Consensus 70 Lkv~~~Kk~~-~ICe~~fpt--~IL~Vr-m--Nr~RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~- 140 (391)
T KOG2110|consen 70 LKVVHFKKKT-TICEIFFPT--SILAVR-M--NRKRLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNA- 140 (391)
T ss_pred EEEEEcccCc-eEEEEecCC--ceEEEE-E--ccceEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCC-
Confidence 9999999888 777766533 388883 3 34566655544 49999999998 66666665556667777777766
Q ss_pred CCCEEEEEE--CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEE-cCCceEEEEeccCCc
Q 000697 1239 DPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRYHHPS 1314 (1348)
Q Consensus 1239 ~g~~LaSgs--~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~-I~Vwd-~~g~~l~~i~~~h~~ 1314 (1348)
+.+++--+ ..|.|.+||..+. +++..+..|++.+-+++|+++|.+||++|..|+ |+||. -+|+.+..++. -.
T Consensus 141 -n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-G~- 216 (391)
T KOG2110|consen 141 -NCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-GT- 216 (391)
T ss_pred -CceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-Cc-
Confidence 66776433 4689999999998 899999999999999999999999999999997 58999 57899988875 21
Q ss_pred ccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
....|.+++||+++++|++.|+.++|+||.
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 235789999999999999999999999973
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=8e-12 Score=141.92 Aligned_cols=193 Identities=20% Similarity=0.231 Sum_probs=144.4
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1139 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1139 ~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
.+++|+.++..+.+++.||++|||+..+.. .+.....|+.. |.++ .++++|..|++-+.| ..+|||.+++.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~e-V~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a-~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAE-VKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALA-R 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCc-cccc-eeCCCCcEEEEecCC-ceEEEEeccCchhh-h
Confidence 358999999999999999999999988777 67777777776 9999 789999999999999 99999999985332 2
Q ss_pred ecCCCCCCCCeEEEEEecCCCC---C--EEEEEECCCcEEEEEcCCCCc----ceEEEecCCCCeEEEEEeCCCCEEEEE
Q 000697 1219 TRPHTQQVERVVGISFQPGLDP---A--KIVSASQAGDIQFLDIRNHKD----AYLTIDAHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g---~--~LaSgs~DG~I~IWDlr~~~~----~v~t~~~h~~~VtsLa~spdg~~Lasg 1289 (1348)
. +..+.......+.|+.+ + . .++....-+.|+.||+..... ..+........|++++++++|+++|.|
T Consensus 223 ~-t~~~k~~~~~~cRF~~d--~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 K-TPFSKDEMFSSCRFSVD--NAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred c-CCcccchhhhhceeccc--CCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2 21233445667788766 3 2 222333446677777664422 122222224479999999999999999
Q ss_pred eCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1290 SAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+.||.|.|++.. -+.+.-++. .|...|+.+.|+|+.+++++.+.|..+.|
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999999954 344444443 25578999999999999999888887765
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.2e-11 Score=147.36 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=198.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEE-CC-CC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWN-YE-ED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd-~~-t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
|...+++.++||.++++|+|..||.|.||. .. ++ .....+.=|. ..|+++.| +.+|.+|++||..|.+-+|
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---~~V~~L~f--S~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---DEVNSLSF--SSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc---cccceeEE--ecCCceEeecccceEEEEE
Confidence 345589999999999999999999999994 33 12 3345566677 79999999 7899999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC----------CCC
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----------SSD 1179 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----------~~~ 1179 (1348)
.+.+ ++.+. ++...+.|.. +.+++++....+...|+.|.+....+.. ...++.+ ...
T Consensus 279 q~~T--~~kqf------LPRLgs~I~~----i~vS~ds~~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 279 QLET--GKKQF------LPRLGSPILH----IVVSPDSDLYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred eecC--CCccc------ccccCCeeEE----EEEcCCCCeEEEEecCceEEEEeccchh-hhhhccCccCCCcccccccc
Confidence 9987 33332 4555566666 8889999999999999999998765443 2222221 123
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----C---CCCCCeEEEEEecCCCCCEEEEEEC---
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----T---QQVERVVGISFQPGLDPAKIVSASQ--- 1248 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----~---~h~~~I~sl~~sp~~~g~~LaSgs~--- 1248 (1348)
+-.+.+ ..+|..+.++-.+..|.|.+||+-+.+.+ ..++.. . .+...++.++.+.. |.+++|+-.
T Consensus 346 ~l~t~~-~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d 421 (792)
T KOG1963|consen 346 SLTTGV-SIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARID 421 (792)
T ss_pred ccceeE-EEcCCCCceeecCCCceEEEEecccccee-eeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeeh
Confidence 324455 56676777888889999999999887643 222211 1 12235677777776 889988743
Q ss_pred -----CC--cEEEEEcCCCCc---c-eEEEecCCCCeEEEEEeC-CCC-EEEEEeCCCcEEEEEcCCc-eE------EEE
Q 000697 1249 -----AG--DIQFLDIRNHKD---A-YLTIDAHRGSLSALAVHR-HAP-IIASGSAKQLIKVFSLEGE-QL------GTI 1308 (1348)
Q Consensus 1249 -----DG--~I~IWDlr~~~~---~-v~t~~~h~~~VtsLa~sp-dg~-~LasgS~Dg~I~Vwd~~g~-~l------~~i 1308 (1348)
|| .+|+|-.....+ . ......|...+...++.+ ... .+++++.||.++||-+++. .+ ...
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 33 478997764321 1 123346777666666554 333 7889999999999986321 11 111
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. -.. -|..++++++|+.||..|+.+ .|++|.+||
T Consensus 502 ~~-i~s---y~k~~i~a~~fs~dGslla~s-~~~~Itiwd 536 (792)
T KOG1963|consen 502 KA-IGS---YHKTPITALCFSQDGSLLAVS-FDDTITIWD 536 (792)
T ss_pred ee-eec---cccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence 11 001 145789999999999766655 688999997
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.45 E-value=6.9e-12 Score=135.58 Aligned_cols=258 Identities=17% Similarity=0.257 Sum_probs=182.6
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeC----CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEE
Q 000697 1067 DTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASC----NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1141 (1348)
Q Consensus 1067 ~~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~----DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1141 (1348)
++.+..+..+- .+.++.|...++ +.+|+.|+- .+.|.|-.+....++ ++. +.-.+|..+++. +
T Consensus 35 ~~eiy~Y~ap~----~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e--~~~--~a~fd~~YP~tK----~ 102 (364)
T KOG0290|consen 35 RKEIYTYNAPW----PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE--LVE--DANFDHPYPVTK----L 102 (364)
T ss_pred cceEEEecCCC----ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc--eec--cCCCCCCCCccc----e
Confidence 34455555554 678888854343 346777763 456777777653332 221 122467777777 8
Q ss_pred EEecCCC----eEEEEECCCeEEEEECCCCceee---eee----cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 000697 1142 DWQQQSG----YLYASGEVSSIMLWDLEKEQQMV---NPI----PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1348)
Q Consensus 1142 ~ws~~~~----~Ll~gg~Dg~IrVWDl~t~~~~v---~~l----~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr 1210 (1348)
-|.|+.. .+++++. ..+|+|.+..+...+ ..+ ..+...++++..|...+.+++.+.+-|-+..|||+.
T Consensus 103 ~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EecCCccccCcchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 8888763 3454444 469999887533011 111 234456799998888899999999999999999999
Q ss_pred CCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--CCCeEEEEEeCCCC-EE
Q 000697 1211 TPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVHRHAP-II 1286 (1348)
Q Consensus 1211 ~~~~-~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--~~~VtsLa~spdg~-~L 1286 (1348)
++.. .+++ .+-.|...|..++|..+ +.+.|++.+.||.||+||+|......-.++.. ..++..++|++... ++
T Consensus 182 ~~~~~~vkT--QLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 182 TGVSGTVKT--QLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred eccccceee--EEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 8732 1222 23368899999999987 67899999999999999999764333333322 45788899998654 67
Q ss_pred EEEeCC-CcEEEEEc--CCceEEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1287 ASGSAK-QLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1287 asgS~D-g~I~Vwd~--~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
|+-..| ..|.|.|+ ....+..+++ |. +.|++++|.|+. ..|+|+|.|..+.|||
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~-H~-------a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRN-HQ-------ASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhc-Cc-------ccccceEecCCCCceeeecCCcceEEEEe
Confidence 765444 46889995 4677888888 65 899999999987 6899999999999997
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.44 E-value=4e-12 Score=142.24 Aligned_cols=230 Identities=11% Similarity=0.226 Sum_probs=168.3
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000697 1032 TRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1103 (1348)
..|.++|..++|+|..+ .||+|++|.+|.||++-.+ +.+..+.+|. .+|--++|.+ ...+.|+++|.|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---rrVg~V~wHP-tA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---RRVGLVQWHP-TAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---eeEEEEeecc-cchhhHhhccCC
Confidence 56778999999999776 7889999999999998654 4567788999 8999999953 356789999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
.+|.+|++.+ ++.. + .+. |...|.+ +.|+.+|+.+++++.|+.|||||.++++ .+..-.+|.+..-.
T Consensus 154 n~v~iWnv~t--geal-i----~l~-hpd~i~S----~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 154 NTVSIWNVGT--GEAL-I----TLD-HPDMVYS----MSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPA 220 (472)
T ss_pred ceEEEEeccC--Ccee-e----ecC-CCCeEEE----EEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCcc
Confidence 9999999976 4332 2 234 8888887 9999999999999999999999999999 88887777665444
Q ss_pred EEEEecCCCCEEEEEeC---CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1184 ALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~---DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
.. .+-.+|.++.+|+. +..+-+||...-+...... .. ...+.|.---+.++ .+-..++|-.||.|+.|.+...
T Consensus 221 Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-DtSnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 221 RA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-DTSNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ee-EEeccCceeeeccccccccceeccCcccccCcceeE-Ee-ccCCceEEeeecCC-CCEEEEEecCCcceEEEEecCC
Confidence 44 34457777777764 6789999988655332221 22 22356666667887 4445566778999999999876
Q ss_pred CcceEEEec--CCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDA--HRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~--h~~~VtsLa~spd 1282 (1348)
..-++-+.. ...+-+.+.|-|.
T Consensus 297 ~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 297 PPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CceeEEecccccCCcccccccccc
Confidence 222332221 1234455566554
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.44 E-value=5.8e-11 Score=140.16 Aligned_cols=249 Identities=9% Similarity=0.123 Sum_probs=161.3
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEecc
Q 000697 1036 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDY 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs-~dg~I~VWd~~t-~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~ 1112 (1348)
..+..++++|++++|++++ .++.|.+|+++. ++. ....... .......+.| ++++++|++++. ++.|.+|++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~-~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP-LPGSPTHIST--DHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-CCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEEC
Confidence 5677899999999887765 588999999873 332 2221111 1135678888 789998888764 8899999986
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-----eecCCCCCCeEEEE
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN-----PIPSSSDCSISALT 1186 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~-----~l~~~~~~~VtsL~ 1186 (1348)
......+.+ ..+.+ ...... ++++|+++++++++ .++.|.+||+.+.. .+. ......+.....+
T Consensus 111 ~~g~~~~~~---~~~~~-~~~~~~----~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~- 180 (330)
T PRK11028 111 KDGIPVAPI---QIIEG-LEGCHS----ANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHM- 180 (330)
T ss_pred CCCCCCCce---eeccC-CCcccE----eEeCCCCCEEEEeeCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceE-
Confidence 421111111 11221 122233 67899999998876 66999999998643 221 1111122335677
Q ss_pred EecCCCCEEEEEeC-CCeEEEEECCCC--C-eeeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcC
Q 000697 1187 ASQVHGGQLAAGFV-DGSVRLYDVRTP--D-MLVCSTRPHT---QQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIR 1258 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~-DG~VrvwDlr~~--~-~~v~~~~~~~---~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr 1258 (1348)
.+++++++++++.. +++|.+||+... + ..+....... .+......+.++|+ +++++++.. ++.|.+|++.
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd--g~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD--GRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC--CCEEEEecCCCCeEEEEEEe
Confidence 66789999887776 899999999742 2 1222221111 11223456889999 888888754 6889999996
Q ss_pred CCCcc---eEEEecCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC
Q 000697 1259 NHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLE 1301 (1348)
Q Consensus 1259 ~~~~~---v~t~~~h~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~ 1301 (1348)
..... +..+.. ......+.++|+|++|++++. +++|.+|+++
T Consensus 259 ~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 259 EDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 54222 222222 124568899999998887765 8899999864
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=1.8e-10 Score=128.91 Aligned_cols=234 Identities=16% Similarity=0.226 Sum_probs=162.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~ 1113 (1348)
..+..+.|+++...|.+|+.|| .++|+.+.-........ .+..|..+-| ...+++..+.+. .+++++...
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~---~~~~IvEmLF----SSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT---EGVSIVEMLF----SSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC---CCeEEEEeec----ccceeEEEecCCCceEEEEEccc
Confidence 4567777999999999999776 57887765443211111 1245666666 456666666543 477777644
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC--CCCCeEEEEEecCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS--SDCSISALTASQVH 1191 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~--~~~~VtsL~~~s~d 1191 (1348)
...-+++. ....|.+ +.++ .+.|++.=.+. |+|||++..+ .+.++..- +...+.++ ..+..
T Consensus 78 ~~~ICe~~--------fpt~IL~----VrmN--r~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~Al-S~n~~ 140 (391)
T KOG2110|consen 78 KTTICEIF--------FPTSILA----VRMN--RKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCAL-SPNNA 140 (391)
T ss_pred CceEEEEe--------cCCceEE----EEEc--cceEEEEEccc-EEEEecccce-eehhhhccCCCccceEee-ccCCC
Confidence 11111111 1223333 4443 45666664443 9999999999 88888754 22235555 44445
Q ss_pred CCEEEEE--eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceEEEe
Q 000697 1192 GGQLAAG--FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1192 g~~LvsG--s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~t~~ 1268 (1348)
+.+++-- ...|.|.+||..+-+ .+..+. .|++.+-+++|+++ |.+||++|..|+ ||||.+.++ +.+..|+
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~---aH~~~lAalafs~~--G~llATASeKGTVIRVf~v~~G-~kl~eFR 213 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQ-PVNTIN---AHKGPLAALAFSPD--GTLLATASEKGTVIRVFSVPEG-QKLYEFR 213 (391)
T ss_pred CceEEecCCCCCceEEEEEcccce-eeeEEE---ecCCceeEEEECCC--CCEEEEeccCceEEEEEEcCCc-cEeeeee
Confidence 5577743 346999999999877 455543 67799999999999 999999999998 899999988 6777776
Q ss_pred cC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1269 AH--RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1269 ~h--~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
-. ...|.+++|||++++|++.|..++|.||.++
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 32 3468899999999999999999999999864
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.7e-11 Score=146.86 Aligned_cols=279 Identities=13% Similarity=0.189 Sum_probs=186.3
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEeccCCCCceeE
Q 000697 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQKL 1120 (1348)
Q Consensus 1042 ~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~~~~~~l 1120 (1348)
.|++|+++++... +..|.||...+|.++..+.+|. ..++++.+.++... .++++++.||.|++||... .++
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~----~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD----GEL 94 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCC----cEE
Confidence 4899999888777 6799999999999999999999 88999998654443 6788999999999999854 333
Q ss_pred EeeeecccCCCCcccccceEEEEecCCCeEEEEECC------------CeEEEEECCCCceeeeee-cCCCCCCeEEEEE
Q 000697 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------------SSIMLWDLEKEQQMVNPI-PSSSDCSISALTA 1187 (1348)
Q Consensus 1121 vs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D------------g~IrVWDl~t~~~~v~~l-~~~~~~~VtsL~~ 1187 (1348)
... +..+ .++....+..++-.....++++..| +.++-+.+.+.......+ ..+.. -.++ .
T Consensus 95 lkt---~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~--~~~I-~ 167 (792)
T KOG1963|consen 95 LKT---FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE--PKSI-V 167 (792)
T ss_pred EEE---EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC--CccE-E
Confidence 322 2111 1111111101111111111122222 222223322221011111 11111 1333 3
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC---CCcce
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN---HKDAY 1264 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~---~~~~v 1264 (1348)
+.+.|...... .+..+.+|+..+........+....|...+++.+++|. ++++++|..||.|.+|.--. .....
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccccccc
Confidence 44555555444 45678888888755333333344567778999999999 99999999999999996432 22455
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeE
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1344 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I 1344 (1348)
+.+.-|...|++++|+++|.+|.+|+..|.+.+|.+.... .+ |+.+-.++|..+.++||+.+.+....|+.|
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq-------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ-------FLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc-------cccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 6777889999999999999999999999999999965433 22 233345899999999999999999999998
Q ss_pred EE
Q 000697 1345 SI 1346 (1348)
Q Consensus 1345 ~I 1346 (1348)
.+
T Consensus 317 ~l 318 (792)
T KOG1963|consen 317 HL 318 (792)
T ss_pred EE
Confidence 76
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.2e-12 Score=140.27 Aligned_cols=186 Identities=17% Similarity=0.256 Sum_probs=142.0
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
..++++-..|.|++||..+++ .+..++++... +..+.+.+. .++.+.+++.||+||+||+|...+..+. ...+|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~-~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPAT-TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--SWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCc-ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--eccCCC
Confidence 457777899999999999988 88899887665 677755554 5678999999999999999987643322 222333
Q ss_pred -CCeEEEEEecCCCCCEEEEEEC----CCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1227 -ERVVGISFQPGLDPAKIVSASQ----AGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1227 -~~I~sl~~sp~~~g~~LaSgs~----DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
.+..+++.+-. ++.+++|+. +-.|.+||+|+.++++..+ ..|.+.|+++.|||..+ +|++||.||.|.|||
T Consensus 117 ~~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 56777777655 788888864 5669999999886645544 57999999999999755 999999999999999
Q ss_pred cCCce-----EEEEeccCCcccccccCCeEEEEEeCCC-CEEEEEECCCeEEEcC
Q 000697 1300 LEGEQ-----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~g~~-----l~~i~~~h~~f~~~~~~~Vtslafspdg-~~Latgs~Dg~I~IWd 1348 (1348)
+++.. +.++. +.+.|.++.|+..+ +.+.+-+..+...+|+
T Consensus 195 ~~~d~EeDaL~~viN---------~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 195 TKKDNEEDALLHVIN---------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred cCCCcchhhHHHhhc---------ccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 76541 12221 34679999999888 4577777888888885
No 198
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=4.5e-11 Score=131.88 Aligned_cols=257 Identities=15% Similarity=0.257 Sum_probs=177.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-c----EEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEEe
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEED-T----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~----~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
.-|.++.|..+|.+|+||+.+|.|.++.-+.. + ....++.|.+. ...|..+.|....+...++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 56899999999999999999999999965432 2 34556677643 2468899997656667888889
Q ss_pred CCCeEEEEeccCCCCcee-----------EE-----------------eeeecc-cCCCCcccccceEEEEecCCCeEEE
Q 000697 1102 CNGNIRIWKDYDQKDKQK-----------LV-----------------TAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~-----------lv-----------------s~~~~l-~~h~~~V~si~~~v~ws~~~~~Ll~ 1152 (1348)
.|.+|++|.+.....+.+ .+ .+.+.+ ..|+.-+.+ +.++.|...+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS----IS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS----ISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee----eeecCccceEee
Confidence 999999999965322210 00 011111 234545555 666666666665
Q ss_pred EECCCeEEEEECCCCce--eeeeecCCCC----CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeE---eecC--
Q 000697 1153 SGEVSSIMLWDLEKEQQ--MVNPIPSSSD----CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC---STRP-- 1221 (1348)
Q Consensus 1153 gg~Dg~IrVWDl~t~~~--~v~~l~~~~~----~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~---~~~~-- 1221 (1348)
.+|=.|.+|+++-..+ .+..++.+.- .-|++-.+.+...++|+-.+..|+|++.|+|...-+-. .+..
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4667799999874431 2333443321 12666656666778999999999999999995431111 1110
Q ss_pred -------CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC---------------CeEEEEE
Q 000697 1222 -------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG---------------SLSALAV 1279 (1348)
Q Consensus 1222 -------~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~---------------~VtsLa~ 1279 (1348)
+.+--..|..+.|+.. |+++++-+. -+|++||+.....++.+++.|.. .-..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~s--GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS--GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC--CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 0111246889999998 999998764 58999999776689999988742 2346789
Q ss_pred eCCCCEEEEEeCCCcEEEEEc
Q 000697 1280 HRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1280 spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
+.++.+++|||....+++|+.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 999999999999999999994
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.39 E-value=4.2e-11 Score=131.50 Aligned_cols=230 Identities=14% Similarity=0.212 Sum_probs=172.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
..+|+|.+|++|+..+|++.....|.||..... +..++++.|+ ..|++++| .+..+.|++++.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdW--ap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDW--APKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---cceeEEee--cCCCCceeEccCCCCcccccc
Confidence 368999999999999999999999999988754 5678889999 89999999 789999999999999999998
Q ss_pred -cCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee--eeeecCCCCCCeEEEEEe
Q 000697 1112 -YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM--VNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1112 -~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~--v~~l~~~~~~~VtsL~~~ 1188 (1348)
....-++.++ +..+....++ +.|+|.++.+++|+..+.|.||-.+.+..- -+.++....+.|+++ .+
T Consensus 85 ~~~~~Wkptlv-----LlRiNrAAt~----V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dW 154 (361)
T KOG1523|consen 85 PSGGTWKPTLV-----LLRINRAATC----VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DW 154 (361)
T ss_pred CCCCeecccee-----EEEeccceee----EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-ec
Confidence 3323334444 4556666666 999999999999999999999988776511 112333334459999 66
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-----CC---------eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRT-----PD---------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~-----~~---------~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I 1254 (1348)
.+++-++++|+.|+..|||..-- .. +.-..+.......++|..+.|+|. |..|+-.+.|+.|.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEE
Confidence 78899999999999999986421 10 000111112234589999999999 999999999999999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
-|.....+.+.+.....-+..++.|-.
T Consensus 233 ~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 233 VDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred eecCCCchhccchhhccCCceeeEeec
Confidence 998866434444443335566666644
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=7.1e-11 Score=124.96 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=163.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE------EEEeeC--C--CCCCCCeEEEEEEeeCCCCEEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL------LNSFDN--H--DFPDKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~------l~~~~~--h--~~~~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
..|+++|+.++|+ +.+|++|+ ||.|+=|.|..... +...+. + ..+--.|+++-. .|..+-+++++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~Ag 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFAG 133 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEec
Confidence 4578999999998 56888887 69999999864321 111111 1 111236888887 56666777777
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-----
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----- 1176 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~----- 1176 (1348)
.|+.+.-||+++ |+.+ +.+++|++.+.+ +.--..++.+++|+.||++|+||.++.+ ++..+..
T Consensus 134 GD~~~y~~dlE~--G~i~-----r~~rGHtDYvH~----vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 134 GDGVIYQVDLED--GRIQ-----REYRGHTDYVHS----VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPN 201 (325)
T ss_pred CCeEEEEEEecC--CEEE-----EEEcCCcceeee----eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChh
Confidence 999999999987 6655 448999999988 5554567899999999999999999999 8877653
Q ss_pred ----CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE
Q 000697 1177 ----SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1252 (1348)
Q Consensus 1177 ----~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I 1252 (1348)
+-+.+|.++ ..+.+.+++|+ ...+.+|.+|..+ ..+++ ... ..+..+.|.. +.+++++....|
T Consensus 202 ~lRp~~g~wigal---a~~edWlvCGg-Gp~lslwhLrsse-~t~vf-pip---a~v~~v~F~~----d~vl~~G~g~~v 268 (325)
T KOG0649|consen 202 LLRPDWGKWIGAL---AVNEDWLVCGG-GPKLSLWHLRSSE-STCVF-PIP---ARVHLVDFVD----DCVLIGGEGNHV 268 (325)
T ss_pred hcCcccCceeEEE---eccCceEEecC-CCceeEEeccCCC-ceEEE-ecc---cceeEeeeec----ceEEEeccccce
Confidence 234456666 23567888775 4579999999988 66666 443 6788888864 488888888889
Q ss_pred EEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1253 QFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1253 ~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.-|.+. +.....+.......++..|+-. -+++-.++....+.|+.
T Consensus 269 ~~~~l~--Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTLN--GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeec--cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 999887 3333333333333444444322 23444455555565553
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1e-11 Score=137.93 Aligned_cols=260 Identities=14% Similarity=0.170 Sum_probs=183.6
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC--CCceeEEeeeeccc-CCCCcccccceEEEEecCCC
Q 000697 1072 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1072 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+.+|. +.|.++.| +.++.+|++|++|..+++|++... ...++.+ .... .|...|.+ ++|...+.
T Consensus 51 D~~~H~---GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI---~~~~~~H~SNIF~----L~F~~~N~ 118 (609)
T KOG4227|consen 51 DVREHT---GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI---GVMEHPHRSNIFS----LEFDLENR 118 (609)
T ss_pred hhhhhc---cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCc---eeccCccccceEE----EEEccCCe
Confidence 355677 89999999 668999999999999999998541 0111111 1111 23344544 99999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
.+++|+.+++|..-|+++.+ .+..+... ..+.|..+ ..+|..+.|++.+.+|.|.+||.|........+ .......
T Consensus 119 ~~~SG~~~~~VI~HDiEt~q-si~V~~~~~~~~~VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQ-SIYVANENNNRGDVYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccce-eeeeecccCcccceeec-ccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCc
Confidence 99999999999999999988 66555432 22358998 566778999999999999999999765322222 1122346
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
....+.|+|. ...+|++++..|-+.+||++....++....+. ...-.++.|+|.|..+.+--....-.+||+-
T Consensus 196 ~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 196 NFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred cceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 7788999998 67889999999999999999765554433222 1223567899999988776555555678866
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+..++..|...---.+..+.+++|..+.. +++|+.+=.|++|.
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 55555555423210112345678888987655 88999999999994
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.37 E-value=1.1e-11 Score=144.42 Aligned_cols=245 Identities=18% Similarity=0.231 Sum_probs=171.2
Q ss_pred EcCCCCEEEE--EECCCcEEEEECCCC-cE----EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1043 LQPFSPIVVA--ADENERIKIWNYEED-TL----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1043 fspdg~~Lat--gs~dg~I~VWd~~t~-~~----l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
|+.+...+|+ ++..|.|-||++... ++ +-.+.+ +..|+++.|. .-|...|+++++||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N----gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN----GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc----CceeeecccC-CCChHHeeecccCceEEEEEeccCC
Confidence 4445555554 456899999998753 22 222222 3579999994 3578899999999999999997754
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~ 1194 (1348)
......+.-..+..|...|++ +.|+|-. ..|++++.|-+|++||+.+.+ ....+.+|.+. |.++ .|+++|+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~s----lRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdq-If~~-AWSpdGr~ 734 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITS----LRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQ-IFGI-AWSPDGRR 734 (1012)
T ss_pred CCcccCCcceeeecccceEEE----EEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCc-eeEE-EECCCCcc
Confidence 433333444567889988888 8999864 456677899999999999998 88889999887 9999 78999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC----cEEEEEcCCCC-cceEEEec
Q 000697 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG----DIQFLDIRNHK-DAYLTIDA 1269 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG----~I~IWDlr~~~-~~v~t~~~ 1269 (1348)
+++.+.||+|++|..|+++..+..-+.-.+ ..--.|.|--+ |+++++.+.|. .|.+||..+.. .++.+..-
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacd--gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACD--GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEec--CcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999999988765544332222 22335556555 88887776653 48888877542 23332211
Q ss_pred CCC-CeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCc
Q 000697 1270 HRG-SLSALAVHRH-APIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1270 h~~-~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
... .+.--.+.+| +.++++|-.|..|.+|.+..+
T Consensus 811 Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 100 0111123344 347889999999999995443
No 203
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.36 E-value=6.2e-11 Score=133.69 Aligned_cols=253 Identities=12% Similarity=0.235 Sum_probs=178.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--------C--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYE--------E--------DTLLNSFDNHDFPDKGISKLCLVNELDVS 1095 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~--------t--------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~ 1095 (1348)
.+|...|+++.|+|+|++||+|+++|.|.+|... + ....+.+.+|. ..|..++| ++++.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~---~diydL~W--s~d~~ 136 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR---DDIYDLAW--SPDSN 136 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc---cchhhhhc--cCCCc
Confidence 3567889999999999999999999999999765 2 12344566787 89999999 78999
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~ 1175 (1348)
++++|+.|..+++||+.. |... ..+.+|...+.. ++|.|-+.++++-+.|...+++++.... .+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~--G~l~-----~~~~dh~~yvqg----vawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~ 204 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHA--GQLL-----AILDDHEHYVQG----VAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHG 204 (434)
T ss_pred eeeeeeccceEEEEEecc--ceeE-----eeccccccccce----eecchhhhhhhhhccCcccceeeeeeee-eeeeee
Confidence 999999999999999966 4433 347889888888 9999999999988888877777765544 222111
Q ss_pred ---------CCCCCCeEEE------------EEecCCCCEEEEEeC----CC-----eEEEEECCCCCeeeEeecCCCCC
Q 000697 1176 ---------SSSDCSISAL------------TASQVHGGQLAAGFV----DG-----SVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1176 ---------~~~~~~VtsL------------~~~s~dg~~LvsGs~----DG-----~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
.+..+.++.| ..+.|+|.++++... +| ..++|+....+.....+.. -
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~---~ 281 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS---P 281 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC---C
Confidence 1112223333 035678888887642 22 3356655533333322211 2
Q ss_pred CCCeEEEEEecC-------C---------CCCEEEEEECCCcEEEEEcCCCCcceEEE-ecCCCCeEEEEEeCCCCEEEE
Q 000697 1226 VERVVGISFQPG-------L---------DPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1226 ~~~I~sl~~sp~-------~---------~g~~LaSgs~DG~I~IWDlr~~~~~v~t~-~~h~~~VtsLa~spdg~~Las 1288 (1348)
......+.++|- . -+-.++.++. ..|.+||..+. .++... ..|-..|+.++|+++|.+++.
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~-~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTL-EPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccc-cceEEEeeeeeeeecceeecCCCcEEEE
Confidence 244445555442 0 0334566665 47999999986 555444 458889999999999999999
Q ss_pred EeCCCcEEEEEcCCceEE
Q 000697 1289 GSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~g~~l~ 1306 (1348)
.|.||...+-.+++..+.
T Consensus 360 SS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eccCCceEEEEEcchhcc
Confidence 999999988887765555
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=4.6e-11 Score=134.31 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCcEEEEe------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1036 KGTKTALLQPFSP--IVVAADENERIKIWNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fspdg~--~Latgs~dg~I~VWd~~t~~~l~~~------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
..|+.++|.-+++ .|...+.+..+..+..+........ .... ..|..++. .+..|++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~---~~I~gl~~----~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT---KSIKGLKL----ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc---ccccchhh----cCCEEEEEecCCcEE
Confidence 3566777766554 4444446777777777765544432 2233 67888876 446888899999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EECC--CeEEEEECCCCceeeeeecCC-------
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEV--SSIMLWDLEKEQQMVNPIPSS------- 1177 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg~D--g~IrVWDl~t~~~~v~~l~~~------- 1177 (1348)
+|......-..... ..+..+ ..+.. +.-.+...+|++ ||.. ..+.+||++..+ .+.+-+.-
T Consensus 129 ~~~~k~~d~hss~l---~~la~g-~g~~~----~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKL---IKLATG-PGLYD----VRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL 199 (412)
T ss_pred EEeccCCccccccc---eeeecC-Cceee----eccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc
Confidence 99986422101111 011111 11221 333344555555 6777 789999999876 44432221
Q ss_pred -CCCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1178 -SDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1178 -~~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
..-+++++.+.+. ....|++++.-+.||+||.+.+..++..+... ...|+++...|+ ++.+++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~--gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPS--GNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCC--CcEEEEecccchhhee
Confidence 1224666744433 16789999999999999999888888877444 488999999999 9999999999999999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
|++.+......+.+-.+.|+++..||.++++|+++-|..|+|+|+..
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99988444445888899999999999999999999999999999765
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=141.79 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1032 ~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
..|.++|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+. +|. ..|.+++|.+..+..++++|..|..|+++|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4578999999999999999999999999999999888888875 566 889999999888899999999999999999
Q ss_pred ccCCCCcee---EEeeeecccCCCCcccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCC------CC-
Q 000697 1111 DYDQKDKQK---LVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSS------SD- 1179 (1348)
Q Consensus 1111 l~~~~~~~~---lvs~~~~l~~h~~~V~si~~~v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~------~~- 1179 (1348)
+...++... .....+....|...|+. ++-.|++ ..+.+++.||+|+-+|++....|-.....+ ..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKr----ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKR----IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhh----eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 975332211 22233556778888888 4445777 578888999999999998744121111111 00
Q ss_pred -CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe-----------------eeEeecCCCCCC-----------CCeE
Q 000697 1180 -CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----------------LVCSTRPHTQQV-----------ERVV 1230 (1348)
Q Consensus 1180 -~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~-----------------~v~~~~~~~~h~-----------~~I~ 1230 (1348)
-...|++..+.+..+|++|+.|-..++||.|...+ ++..+. .+|. ..++
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeE
Confidence 12466756666788999999999999999652110 111111 1121 1256
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1231 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1231 sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
-+.|+|+ |..|+..-..-.|.++|+...+
T Consensus 278 ~vtfnpN--GtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPN--GTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEECCC--CcEEEEeeCCeEEEEEeecCCC
Confidence 7888998 7666665555679999988654
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=142.85 Aligned_cols=228 Identities=17% Similarity=0.297 Sum_probs=176.5
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|..++| .|||..|+.+..+ .+.+||..+ |.. . +++++|...|.+ ++|+.+|..+++|+.|+.|.+
T Consensus 14 ci~d~af--kPDGsqL~lAAg~-rlliyD~nd--G~l--l---qtLKgHKDtVyc----VAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSD--GTL--L---QPLKGHKDTVYC----VAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEE--CCCCceEEEecCC-EEEEEeCCC--ccc--c---cccccccceEEE----EEEccCCceeccCCCceeEEE
Confidence 6899999 7899988887665 689999866 432 2 568999999998 999999999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
|.-.-+- .++-.++..|.|+ .++|-...+++++-+ ..-+|...... +...+ ....+.+++|..+ |.
T Consensus 80 W~~klEG----~LkYSH~D~IQCM-sFNP~~h~LasCsLs-dFglWS~~qK~--V~K~k----ss~R~~~CsWtnD--Gq 145 (1081)
T KOG1538|consen 80 WTSKLEG----ILKYSHNDAIQCM-SFNPITHQLASCSLS-DFGLWSPEQKS--VSKHK----SSSRIICCSWTND--GQ 145 (1081)
T ss_pred ecccccc----eeeeccCCeeeEe-ecCchHHHhhhcchh-hccccChhhhh--HHhhh----hheeEEEeeecCC--Cc
Confidence 9865444 3333334449999 778888888887654 46688766443 22111 1367889999998 99
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEe---cCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCceEEEEeccCC
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTID---AHRGSLSALAVHRHA-----PIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1313 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~---~h~~~VtsLa~spdg-----~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~ 1313 (1348)
+++.|-.||+|.+-+-.. ++...+. +...+|.+++|+|.. ..+++....+++.+|.++|+.+..-+. -.
T Consensus 146 ylalG~~nGTIsiRNk~g--Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~ 222 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNKNG--EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA-LN 222 (1081)
T ss_pred EEEEeccCceEEeecCCC--CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc-CC
Confidence 999999999999986543 3333333 357799999999963 389999999999999999988875443 22
Q ss_pred cccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1314 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1314 ~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-...|+++.++|.++..||.|+.+++|
T Consensus 223 -------FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 223 -------FDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred -------CCchhheeccCCcEEEEccCCCceEEE
Confidence 235789999999999999999999887
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=7.1e-11 Score=144.48 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=160.3
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
+..|.|||.+... ...+..+. ..+.+..| ++||+.|+.++.+ ..|.+||+.+ ++.+.+ ..+.++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l---~~~~g~~- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS---QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRS--GARKVV---ASFRGHN- 250 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC---CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCC--CceEEE---ecCCCcc-
Confidence 5789999987444 45566666 67899999 8899999887654 4699999865 443333 2233332
Q ss_pred cccccceEEEEecCCCeEEEEE-CCCeEEEE--ECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeEEEEE
Q 000697 1133 GVRCSNVVVDWQQQSGYLYASG-EVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYD 1208 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVW--Dl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~VrvwD 1208 (1348)
.. .+|+|++..|+.++ .+|.+.|| |+.++. ...+..+... +.+. .++++|+.++.++ .+|...+|+
T Consensus 251 --~~----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~-~~~~-~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 251 --GA----PAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGN-NTEP-SWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --Cc----eeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCC-cCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 23 78999999888875 67765554 666655 4445544333 6677 6788999777655 578888988
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Las 1288 (1348)
+.......... .. .. .+..|+|+ |+.|+.++.++ +.+||+.++ ... .+..+ .....+.|+|+|++|+.
T Consensus 321 ~~~~~~~~~~l-~~---~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 321 MSASGGGASLV-GG---RG--YSAQISAD--GKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIY 388 (429)
T ss_pred EECCCCCeEEe-cC---CC--CCccCCCC--CCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEE
Confidence 76433222322 22 22 45789999 88988887765 556999876 332 22222 12356789999999999
Q ss_pred EeCCCcEEEEE---cCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1289 GSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1289 gS~Dg~I~Vwd---~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
++.++.+.+|+ .+|+.+..+.. |. +.+...+|+|.
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPG-SD-------GQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccC-CC-------CCCCCcccCCC
Confidence 99998887776 57888888876 54 66788899885
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.3e-11 Score=140.15 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=147.5
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000697 1084 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163 (1348)
Q Consensus 1084 tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD 1163 (1348)
..++| +.+|..|++|+.||++|||++.. -... .....|...|.+ ++|++++..|++.|.| ..+|||
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps--~~t~-----l~e~~~~~eV~D----L~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPS--MLTI-----LEEIAHHAEVKD----LDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCc--chhh-----hhhHhhcCcccc----ceeCCCCcEEEEecCC-ceEEEE
Confidence 57888 68999999999999999999754 1111 235678899999 9999999999999999 899999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEecCCC---CEEE--EEeCCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEec
Q 000697 1164 LEKEQQMVNPIPSSSDCSISALTASQVHG---GQLA--AGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQP 1236 (1348)
Q Consensus 1164 l~t~~~~v~~l~~~~~~~VtsL~~~s~dg---~~Lv--sGs~DG~VrvwDlr~~~~--~v~~~~~~~~h~~~I~sl~~sp 1236 (1348)
++++. ++............+.+-+..++ .+++ .-..-|.|+.||+...+. ..+..+.. .....|+++++++
T Consensus 214 ~~~g~-~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 214 VNTGA-ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD 291 (398)
T ss_pred eccCc-hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence 99997 77666532222222222444444 2333 333456677777653331 11111111 1225799999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1237 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1237 ~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+ |++++.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++.+.|..+.|..+..
T Consensus 292 d--Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 D--GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred C--CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9 999999999999999999987444445568999999999999999999999999998887544
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.1e-10 Score=131.29 Aligned_cols=250 Identities=15% Similarity=0.224 Sum_probs=179.7
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
..|++++|...+..+.+...+.|..+..+.+....-...+ ............|.+.. ..++.|+++-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-~~~~~~~l~~~~I~gl~------~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-DDAKTVSLGTKSIKGLK------LADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-ccccccccccccccchh------hcCCEEEEEecCCcEE
Confidence 5789999965555566666667777777776542111111 11122333445555522 2478899999999999
Q ss_pred EEECCCCc---eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC--CeEEEEECCCCCeeeEeecCCC------CCCCCe
Q 000697 1161 LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD--GSVRLYDVRTPDMLVCSTRPHT------QQVERV 1229 (1348)
Q Consensus 1161 VWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D--G~VrvwDlr~~~~~v~~~~~~~------~h~~~I 1229 (1348)
+|..+.+. .....+..+ .++..|.-.+....++++|+.. ..+++||+...+++.... ... .-.-|+
T Consensus 129 ~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK-NvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK-NVPNDRLGLRVPVWI 205 (412)
T ss_pred EEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc-CCCCccccceeeeee
Confidence 99887432 023444443 2366664455556777789998 889999999775332211 111 012478
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE-EE-
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GT- 1307 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l-~~- 1307 (1348)
+++.|-++.....|++++.-+.|++||.+.++.++..+.-...+|+++...|.+.++++|..-|.+..||.++..+ ..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 8899977534678999999999999999999899999999899999999999999999999999999999776544 33
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+++ -.+.|+++..||.+++||++|-|..|+|+|
T Consensus 286 ~kg--------~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 286 LKG--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCC--------ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 333 348899999999999999999999999987
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.1e-10 Score=123.41 Aligned_cols=294 Identities=18% Similarity=0.228 Sum_probs=182.6
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1106 (1348)
+..|.. ..+..++||+.-..+|++..|..|+|||-.+ +....++... ...|++++|-+ -.+.-|++|+.. -|
T Consensus 93 vt~ws~---~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--QrnvtclawRP-lsaselavgCr~-gI 164 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--QRNVTCLAWRP-LSASELAVGCRA-GI 164 (445)
T ss_pred hhhhhh---cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--hcceeEEEecc-CCcceeeeeecc-ee
Confidence 455654 4688999999777889999999999998775 4444444322 26799999942 234466666665 59
Q ss_pred EEEeccCCCCceeEE---e----eeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCC
Q 000697 1107 RIWKDYDQKDKQKLV---T----AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lv---s----~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.||.........+.+ + ..-...+| ..|++ +.|++|+..+++++ .|..|.|||..++. ++.-.....
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVts----mqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~gl 238 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTS----MQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKGL 238 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeE----EEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccCC
Confidence 999874311111100 0 00112233 34444 99999999999997 67889999999998 555443333
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
++ ++-+ -++|++++|.++.-|+..++|.........+ +... .+.|...+|+|. |+.|+-.+. |.-++|.+.
T Consensus 239 gg-~slL-kwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lg---sgrvqtacWspc--GsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 239 GG-FSLL-KWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILG---SGRVQTACWSPC--GSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred Cc-eeeE-EEcCCCCEEEEecccceeeeehhcccceecc-eecc---CCceeeeeecCC--CCEEEEEEc-CCceEEEEe
Confidence 44 7777 7899999999999999999995543321111 1122 258999999999 665544332 344455543
Q ss_pred CCCcc--------------eEEEe-----cC----CCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCceEEE
Q 000697 1259 NHKDA--------------YLTID-----AH----RGSLSALAVHRHAPIIASGSAK--------QLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1259 ~~~~~--------------v~t~~-----~h----~~~VtsLa~spdg~~LasgS~D--------g~I~Vwd~~g~~l~~ 1307 (1348)
..+++ +..+. .. .+++.+++|.|.|.+||+.-.. ..|.+||.....+..
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 21110 00000 11 3578899999999999987543 346778866555555
Q ss_pred EeccCCcccccccCCeEEEEEeC---CCCEEEEEECCCeEEEc
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHP---YQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafsp---dg~~Latgs~Dg~I~IW 1347 (1348)
+.+ . ++.++ ....-++|+| ++.+|..+=+.|.+.-|
T Consensus 390 ls~-c-g~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 390 LSY-C-GMIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred EEe-c-ccccC--CCCceEEeeecccCCcEEEEEeccCceEee
Confidence 442 1 12221 1234455555 34566555556766544
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=9.3e-10 Score=121.16 Aligned_cols=237 Identities=19% Similarity=0.334 Sum_probs=160.6
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeE-EEEECC----
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL-YASGEV---- 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~L-l~gg~D---- 1156 (1348)
...+++| ++|...+++|.++| .|||+..--+.... +...+..-.+.. +-| ..+++ ++||.+
T Consensus 7 ~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~-----r~~~~~G~~~ve----MLf--R~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 7 KTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESAS-----RQFIDGGFKIVE----MLF--RSNYLALVGGGSRPKY 72 (346)
T ss_pred ceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhh-----hccccCchhhhh----Hhh--hhceEEEecCCCCCCC
Confidence 4456888 78889999888776 89998854111111 001111111111 111 12333 344433
Q ss_pred --CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1157 --SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1157 --g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
..|.|||-..+. ++.++.-. ++|.++ ... ++.+++.- .+.|.||.....-+..+.+.+.... ..+.+ +
T Consensus 73 ~pNkviIWDD~k~~-~i~el~f~--~~I~~V-~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~--~ 142 (346)
T KOG2111|consen 73 PPNKVIIWDDLKER-CIIELSFN--SEIKAV-KLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCS--L 142 (346)
T ss_pred CCceEEEEecccCc-EEEEEEec--cceeeE-EEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEe--e
Confidence 469999977777 88887753 348988 443 45566554 6789999988555456655444322 22333 3
Q ss_pred ecCCCCCEEEE-EECCCcEEEEEcCCCCc-ceEEEecCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEE-cCCceEEEEec
Q 000697 1235 QPGLDPAKIVS-ASQAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1235 sp~~~g~~LaS-gs~DG~I~IWDlr~~~~-~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~-I~Vwd-~~g~~l~~i~~ 1310 (1348)
.|..+..+||. |-.-|.|+|-|+..... .-..+.+|.+.|.|++.+-+|.++||+|..|+ |+||| .+|+.+..++.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 34412444544 33569999999986522 34788999999999999999999999999997 69999 78999999875
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
- .....|.+++|+|+..+||++|..|+|+||.
T Consensus 223 -G-----~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 223 -G-----VDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred -C-----CchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 1 2346899999999999999999999999973
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=3.6e-09 Score=116.62 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=157.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEeCC------CeEEEE
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCN------GNIRIW 1109 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L-~tgs~D------G~IrIW 1109 (1348)
...+++|++|...+++|.++ -.+||+.+.-+...+-+-+. .+-.+..+-| ..++| ++||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~-~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFID-GGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhcccc-CchhhhhHhh----hhceEEEecCCCCCCCCCceEEEE
Confidence 45569999999999999855 58999987533322222111 1134444545 23444 344443 479999
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC-CCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~-~~VtsL~~~ 1188 (1348)
|-.. +..... + ....+|.+ +... ...|++. ..+.|+||.....-+.++.+....+ ....++ ..
T Consensus 81 DD~k--~~~i~e-----l-~f~~~I~~----V~l~--r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~-~~ 144 (346)
T KOG2111|consen 81 DDLK--ERCIIE-----L-SFNSEIKA----VKLR--RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL-CP 144 (346)
T ss_pred eccc--CcEEEE-----E-Eeccceee----EEEc--CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee-cC
Confidence 9543 222111 1 23455665 4544 4455554 4567999998743225666654431 224444 22
Q ss_pred cCCCCEEEE-EeCCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceE
Q 000697 1189 QVHGGQLAA-GFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1189 s~dg~~Lvs-Gs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~ 1265 (1348)
..+..+|+. |..-|.|+|-|+...+.- -. ....|.+.|.|++.+-+ |..+||+|..|+ |||||..++ ..+.
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~---~I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g-~~l~ 218 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPS---IINAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG-TLLQ 218 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCce---EEEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-cEee
Confidence 223334443 566799999999876531 12 22367799999999998 999999999998 899999998 7887
Q ss_pred EEec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1266 TIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1266 t~~~--h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
.++. ....|.+++|+|++.+||++|+.|++.||.+.+
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 7763 245799999999999999999999999998643
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.27 E-value=6.3e-11 Score=126.88 Aligned_cols=145 Identities=17% Similarity=0.270 Sum_probs=111.0
Q ss_pred EEEEECCCeEEEEECCCCceeeeee----------cCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1150 LYASGEVSSIMLWDLEKEQQMVNPI----------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~~~v~~l----------~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
+++|-.+|.|.+||+.++. .+..+ ..| ..+|.++.+. +.-+.=++|+.+..+..|.+.........-
T Consensus 168 llaGyEsghvv~wd~S~~~-~~~~~~~~~kv~~~~ash-~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGD-KIIQLPQSSKVESPNASH-KQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEeccCCeEEEEEccCCc-eeeccccccccccchhhc-cCcceeeeec-hhhcCCcCCCccccceeeeeccccCccccc
Confidence 4555689999999999985 33333 233 4458998544 344445677778888899887442111111
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1220 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
..+.-..-.|..+.+-|+ ++++++++.||.|+||..++. .++..++.|.+.|++++|||+..++|++|.|++|.+|+
T Consensus 245 ~e~~lknpGv~gvrIRpD--~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPD--GKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ceEEecCCCccceEEccC--CcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 111112356889999999 999999999999999999998 89999999999999999999999999999999999998
Q ss_pred c
Q 000697 1300 L 1300 (1348)
Q Consensus 1300 ~ 1300 (1348)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 4
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=1.8e-10 Score=143.02 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=191.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC-CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~-~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
+..+..+-. ++|++|. .-.|.+||+.++..+..+..... ....+.... .-.+.+++++..-+.+..=+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~-- 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN-- 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh--
Confidence 344444433 6777665 66799999998866554432110 000000000 02345666665544444322211
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE--EEEecCCCC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA--LTASQVHGG 1193 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vts--L~~~s~dg~ 1193 (1348)
+. +......+.. ..+.-++..++.++.++.+.+||...+. ....+.........+ +.-++.+.-
T Consensus 81 ~~---------~~~~s~wi~g----~~l~~e~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 81 QI---------IERFSDWIFG----AKLFEENKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred hh---------hhhccccccc----cchhhhcceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEE
Confidence 11 1111222222 2223357888889999999999998877 666555433221111 112455566
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1273 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~ 1273 (1348)
++++|+.-|.|.+|+....+... ...+|.+.|.++.++-+ |+++++.|.|.++++|++.+......+.-+|...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~----~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI----RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEEeccccccEEEEeccccCCcc----eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCcccccccce
Confidence 88999999999999998444333 23588999999999998 9999999999999999999884444466689999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+..+.|+|+ .+++++.|.+.++|+.+++.+..++. |. ...++.++.++....++|++.||.+++|+
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~-h~------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDE-HS------GKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEecccceehhhhh-hh------hcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999998 99999999999999999999998887 65 37899999999999999999999999996
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=4.7e-10 Score=123.17 Aligned_cols=272 Identities=13% Similarity=0.168 Sum_probs=181.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCCeEEEEeccCCCCce
Q 000697 1040 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1040 sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
-++|+|+|+++|+.+ +..+.|-|.++-+..+.|..- +.|.-+.| ..|..+++ ....|+.|.+|++.. .
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cl----dki~yieW--~ads~~ilC~~yk~~~vqvwsl~Q----p 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCL----DKIVYIEW--KADSCHILCVAYKDPKVQVWSLVQ----P 81 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHH----HHhhheee--eccceeeeeeeeccceEEEEEeec----c
Confidence 467999999999998 448888898877665555443 36888888 55665554 557888999999965 2
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1197 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lvs 1197 (1348)
+.. -.+..-..++.. .+|+|+|..|+.. ..+-.|.||.+.+.+ +.. ++ +....+..+ .+.++|++.+.
T Consensus 82 ew~---ckIdeg~agls~----~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~-~~-~pK~~~kg~-~f~~dg~f~ai 150 (447)
T KOG4497|consen 82 EWY---CKIDEGQAGLSS----ISWSPDGRHILLTSEFDLRITVWSLNTQK-GYL-LP-HPKTNVKGY-AFHPDGQFCAI 150 (447)
T ss_pred eeE---EEeccCCCccee----eeECCCcceEeeeecceeEEEEEEeccce-eEE-ec-ccccCceeE-EECCCCceeee
Confidence 222 123444455555 8999999777766 478899999999877 332 22 223335666 56778877665
Q ss_pred EeC------------------------------------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1198 GFV------------------------------------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1198 Gs~------------------------------------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
.+. +..+-+||---.-+ +..+ +..-.+..+.|+|. ++
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aY----e~~lG~k~v~wsP~--~q 223 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAY----ERGLGLKFVEWSPC--NQ 223 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeee----eeccceeEEEeccc--cc
Confidence 542 22344555433221 1111 11246889999998 99
Q ss_pred EEEEEECCCcEEEEEcCCCC------------------------c-----------------------------------
Q 000697 1242 KIVSASQAGDIQFLDIRNHK------------------------D----------------------------------- 1262 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~------------------------~----------------------------------- 1262 (1348)
+++.|+.|+.+++.+--+.+ +
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 99999999999886622110 0
Q ss_pred ceEEEe------cCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1263 AYLTID------AHRGSLSALAVHRHAPIIASGSAK--QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1263 ~v~t~~------~h~~~VtsLa~spdg~~LasgS~D--g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
.+..++ .....+..++|++|..++|+-.+. +.+-+||+....+..+-. . ..+|....|+|....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Q-------k~piraf~WdP~~pr 375 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-Q-------KHPIRAFEWDPGRPR 375 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-h-------ccceeEEEeCCCCce
Confidence 000000 012246679999999999987543 568899987766655433 2 268999999999999
Q ss_pred EEEEECCCeEEEcC
Q 000697 1335 LAAGSADACVSIHS 1348 (1348)
Q Consensus 1335 Latgs~Dg~I~IWd 1348 (1348)
|+.+....++++|.
T Consensus 376 L~vctg~srLY~W~ 389 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWA 389 (447)
T ss_pred EEEEcCCceEEEEc
Confidence 98888778888884
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.24 E-value=1e-10 Score=134.86 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=133.4
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
...++.++.||.+.+.+-. ++ ..+.+.+|.+. |.+- -++++|.-|++.+.||.|++|.....- ..+ .....
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~r-VE~sv~AH~~A-~~~g-RW~~dGtgLlt~GEDG~iKiWSrsGML--RSt---l~Q~~ 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-AR-VERSISAHAAA-ISSG-RWSPDGAGLLTAGEDGVIKIWSRSGML--RST---VVQNE 145 (737)
T ss_pred cceEEEEcCCceEEEeccc-ch-hhhhhhhhhhh-hhhc-ccCCCCceeeeecCCceEEEEeccchH--HHH---HhhcC
Confidence 4578888999999988743 33 45667777665 7776 678999999999999999999865332 111 11234
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1306 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~ 1306 (1348)
..|.|++|.|+ ..+.+.+.+ |.+.|=-+... ..+..+++|++-|.+++|++...++++|+.|-..+|||--|..+.
T Consensus 146 ~~v~c~~W~p~-S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf 221 (737)
T KOG1524|consen 146 ESIRCARWAPN-SNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF 221 (737)
T ss_pred ceeEEEEECCC-CCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc
Confidence 78999999999 455555543 56666666665 567788999999999999999999999999999999999898887
Q ss_pred EEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1307 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1307 ~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.-.. |+ .+|++++|+|+ ..++.++
T Consensus 222 ~S~~-~e-------y~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 222 TSAA-EE-------YAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cCCh-hc-------cceeeeeeccc-cceeeee
Confidence 7666 55 89999999999 5555555
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.23 E-value=5e-10 Score=123.17 Aligned_cols=231 Identities=10% Similarity=0.116 Sum_probs=170.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~Ir 1160 (1348)
.+|+|.+| +.|...++++-....|.||..... +-.+.. +++..|...|++ ++|.+..+.|++++.|..-+
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~-~~w~~~---htls~Hd~~vtg----vdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGA-DLWEPA---HTLSEHDKIVTG----VDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCC-CCceec---eehhhhCcceeE----EeecCCCCceeEccCCCCcc
Confidence 68999999 789999999999999999998651 113333 778999999988 99999999999999999999
Q ss_pred EEECCCC-c-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1161 LWDLEKE-Q-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1161 VWDl~t~-~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
||....+ + .+.-.+..+... ++++ -++|.++.|++|+....|.||-......--........+.+.|++++|+|+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrA-At~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn- 157 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRA-ATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN- 157 (361)
T ss_pred ccccCCCCeeccceeEEEeccc-eeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence 9998433 2 123333334343 8999 678899999999999999999877654221000011234588999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-----------------CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNH-----------------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~-----------------~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
+-.++.|+.|+..++|..--. ++.+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|..
T Consensus 158 -nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 158 -NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred -cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 999999999999999974211 02333444456789999999999999999999999999966
Q ss_pred Cce--EEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1302 GEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1302 g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
+.. +..... . .-+..++.|-.+..
T Consensus 237 ~p~~~v~~~~~-~-------~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 237 GPSERVQSVAT-A-------QLPLLSVSWISENS 262 (361)
T ss_pred CCchhccchhh-c-------cCCceeeEeecCCc
Confidence 542 443333 1 13556666654443
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=9.6e-11 Score=135.43 Aligned_cols=170 Identities=21% Similarity=0.389 Sum_probs=134.0
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-CEEEEEeCCCe
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGS 1203 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-~~LvsGs~DG~ 1203 (1348)
+.+.||.+.|.+ ++|+.+|..|++|++|-.+.|||.-..+ .+..+...+...|.++.+.+..+ .++++|..|..
T Consensus 44 ~eL~GH~GCVN~----LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNC----LEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecc----eeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 357899999999 9999999999999999999999999888 88888877766799998877654 56778999999
Q ss_pred EEEEECCCCCe------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe---------
Q 000697 1204 VRLYDVRTPDM------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--------- 1268 (1348)
Q Consensus 1204 VrvwDlr~~~~------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--------- 1268 (1348)
|++||+...+. +.........|...|..++..|+ +.+.+.++++||+|+-+|+|....+-....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999985221 11122234467789999999998 458999999999999999997422211111
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 000697 1269 AHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1269 ~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd~ 1300 (1348)
..--...|+.++|..+ +||+|+.|-..++||.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 1123578999999766 8999999999999993
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.22 E-value=9.7e-12 Score=149.27 Aligned_cols=240 Identities=16% Similarity=0.277 Sum_probs=175.5
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~ 1147 (1348)
+.++.+.+|. ..|.|+.| ...|.++++|++|..|+||...+ +. + .....||.+.++. ++.+..+
T Consensus 181 k~ikrLlgH~---naVyca~f--Drtg~~Iitgsdd~lvKiwS~et--~~--~---lAs~rGhs~ditd----lavs~~n 244 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIF--DRTGRYIITGSDDRLVKIWSMET--AR--C---LASCRGHSGDITD----LAVSSNN 244 (1113)
T ss_pred HHHHHHHhhh---hheeeeee--ccccceEeecCccceeeeeeccc--hh--h---hccCCCCccccch----hccchhh
Confidence 3445567888 88999999 78999999999999999999755 22 2 2467899999998 6666677
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCC-CCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-QQV 1226 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~-~h~ 1226 (1348)
-.+++++.|..|++|-+..+. ++..+.+|.+. |+++ .++|-. +.+.||++++||.|-.. ....-+... ..+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~-pvsvLrghtga-vtai-afsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGA-PVSVLRGHTGA-VTAI-AFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhhcccCceEEEEecCCCc-hHHHHhccccc-eeee-ccCccc----cCCCCCceEeccccccc-cccCCCCCCcccc
Confidence 778888999999999999999 99999999887 9999 555543 78899999999999222 111111111 112
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE-cCCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS-LEGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd-~~g~~ 1304 (1348)
.-+.++.+... +.-++||+.|+.-..|.+... .. +...+.-+..+.+ ..+.+++-.+..+.+|+ .+|..
T Consensus 317 ~~~~s~~~~~~--~~~f~Tgs~d~ea~n~e~~~l-~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 317 DLVDSILFENN--GDRFLTGSRDGEARNHEFEQL-AW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred cceeeeecccc--ccccccccCCcccccchhhHh-hh------hccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 45667777666 889999999999998887642 11 1111111111111 24566666778899999 67777
Q ss_pred EEEEeccCCcccccccCCeEEEEEeCCCCEE-EEEECCCeEEEcC
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIHS 1348 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafspdg~~L-atgs~Dg~I~IWd 1348 (1348)
+..+.+ |. ..+..+.+||-+..+ .+++.||...|||
T Consensus 388 ~H~l~g-hs-------d~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 388 LHNLMG-HS-------DEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhhhcc-cc-------cceeeeeecCCCcHhhhhccCCCceEeee
Confidence 766666 54 789999999988554 5677899999997
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=8.4e-10 Score=135.05 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=147.1
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---g~I~VWd~~t~~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIW 1109 (1348)
..+...+|+|||+.|+.++.+ ..|.+||+.+++. +..+.++ ...++| ++||+.|+.++ .+|.+.||
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~~~~w--SPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NGAPAF--SPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cCceeE--CCCCCEEEEEEecCCcEEEE
Confidence 568899999999999887643 3699999988753 3333333 346788 88999888765 68887777
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
.+....+... .+..+...+.. ..|++++..|+.++ .+|...||++.........+ .+.. .+. .+
T Consensus 276 ~~d~~~~~~~------~lt~~~~~~~~----~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~-~~ 340 (429)
T PRK01742 276 VMGANGGTPS------QLTSGAGNNTE----PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSA-QI 340 (429)
T ss_pred EEECCCCCeE------eeccCCCCcCC----EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCc-cC
Confidence 5543223322 23444444444 89999999877665 57888888765432022223 2222 234 57
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-CCcceEEE
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-HKDAYLTI 1267 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~-~~~~v~t~ 1267 (1348)
+++|+.++.++.++ +.+||+.+++. ....... ...++.|+|+ |+.|+.++.+|.+.+|++.. .+.....+
T Consensus 341 SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~-----~~~~~~~sPd--G~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 341 SADGKTLVMINGDN-VVKQDLTSGST-EVLSSTF-----LDESPSISPN--GIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCC-----CCCCceECCC--CCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 89999998887765 55599988763 2221111 2346789999 99999999999988887632 23678888
Q ss_pred ecCCCCeEEEEEeCC
Q 000697 1268 DAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1268 ~~h~~~VtsLa~spd 1282 (1348)
..|.+.+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888999999984
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=3.6e-09 Score=126.17 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=170.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEeccCCCCc
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~ 1117 (1348)
..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++ ++||++++++. ..+.+.|+|..+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~t---- 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAV--SPDGKYVYVANYEPGTVSVIDAET---- 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE----TTTEEEEEEEETTEEEEEETTT----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEE--cCCCCEEEEEecCCCceeEecccc----
Confidence 457799999999999999999999999999999998766 5678898 78999998775 689999999865
Q ss_pred eeEEeeeecc--c--CCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCcee-eeeecCCCCCCeEEEEEecCC
Q 000697 1118 QKLVTAFSSI--Q--GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQM-VNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1118 ~~lvs~~~~l--~--~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~-v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.+.+..+..- . .....+.. +.-++....+++.- +.+.|.+.|....+.. +..+.. +...... .++++
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~a----Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~-~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAA----IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDG-GFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEE----EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEE-EE-TT
T ss_pred ccceeecccccccccccCCCcee----EEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--ccccccc-ccCcc
Confidence 2222111111 1 11222323 44456666566655 4588888887765412 223332 2235666 67889
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecC--------CCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1192 GGQLAAG-FVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPG--------LDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1192 g~~LvsG-s~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~--------~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
+++++++ ..+..|-++|.++.+. +..+. ....|...+..+ .+|. ..+...++.-..+.+.+||....
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~-v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w- 259 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKL-VALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW- 259 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEE-EEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT-
T ss_pred cceeeecccccceeEEEeeccceE-EEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcC-
Confidence 9887664 5677999999998873 33332 223344444443 2333 01222222333345667888887
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEE----eCCCcEEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASG----SAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1336 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~Lasg----S~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~La 1336 (1348)
+.++++....+. .-+..||+++++.+. ...+.|.|+|... +.+..+.. .. ...+..+.|+++|..+.
T Consensus 260 kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~------~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GP------GKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HH------T--EEEEEE-TTSSEEE
T ss_pred eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cC------CCcEeccEECCCCCEEE
Confidence 788999877666 778889999999887 4458999999654 44555543 11 13489999999998766
Q ss_pred EEEC--CCeEEEcC
Q 000697 1337 AGSA--DACVSIHS 1348 (1348)
Q Consensus 1337 tgs~--Dg~I~IWd 1348 (1348)
.+.. ++.|.|||
T Consensus 332 vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 332 VSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEE--TTEEEEEE
T ss_pred EEEecCCCEEEEEE
Confidence 5555 44798886
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=9.7e-09 Score=125.62 Aligned_cols=236 Identities=11% Similarity=0.096 Sum_probs=155.5
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe---CCCeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs---~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
...|.+||.+.... +.+..+. ..+.+.+| ++||+.|+..+ .+..|.+|++.. ++.+.+ ..+.++
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l---~~~~~~-- 244 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV---ASFPRH-- 244 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCC--CCeEEc---cCCCCC--
Confidence 34788888875443 3344444 57889999 78999888654 245788999865 444433 122222
Q ss_pred cccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-CeEEE--
Q 000697 1133 GVRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRL-- 1206 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G~Vrv-- 1206 (1348)
+.. ..|+|++..|+.. +.+| .|++||+.+++ .. .+..+.. .+... .++++|+.|+..+.+ |...+
T Consensus 245 -~~~----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~-~lt~~~~-~~~~~-~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 -NGA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRS-NNTEP-TWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -cCC----eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EccCCCC-CcCce-EECCCCCEEEEEeCCCCCceEEE
Confidence 233 7899999988876 3444 59999998877 43 3433333 35666 678999988877654 44444
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1207 wDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
+|+.+++ .. .+.. +........|+|+ |+.|+..+.+ ..|.+||+.++ . ...+... .......|+|||
T Consensus 316 ~d~~~g~-~~-~lt~---~~~~~~~~~~SpD--G~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 316 VNINGGA-PQ-RITW---EGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNG 385 (429)
T ss_pred EECCCCC-eE-Eeec---CCCCccCEEECCC--CCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCC
Confidence 4666554 22 2211 1234567889999 8888776543 35888998876 3 3334322 223467899999
Q ss_pred CEEEEEeCCCc---EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1284 PIIASGSAKQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1284 ~~LasgS~Dg~---I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+.|+.++.++. +.+++++|.....+.. |. +.+...+|+|.
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~-~~-------~~~~~p~Wsp~ 428 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 428 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCCeEECcc-CC-------CCcCCcccCCC
Confidence 99998887764 6777888988888876 54 56778888873
No 223
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=1.9e-09 Score=117.47 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=176.5
Q ss_pred CCcEEEEECCCCcEEE--EeeCCCCCCCCeEEEEEEee-CCCC-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1056 NERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNE-LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~--~~~~h~~~~~~ItsL~f~ns-~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
.|.+.+|++++.+... +++... ...+..+.|.-. .++. .++-+..+|.|.++.......... ++.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d--ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD--TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKK 118 (339)
T ss_pred ccceEEEeecccccCccceeeeec--ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhh
Confidence 4678888887654433 222111 146777777422 2444 567778889999998754211111 12233222
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr 1210 (1348)
-.+. ..++++|+..+..++++-.+|.+.+-+..... +.++.++.|.-. .+...+...+.+++.+|+.||.+..||+|
T Consensus 119 i~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 ISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEec
Confidence 2222 24568999999999999899998865544433 134467776544 55555666778999999999999999999
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC--CCEEEE
Q 000697 1211 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH--APIIAS 1288 (1348)
Q Consensus 1211 ~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd--g~~Las 1288 (1348)
.++ ...+...+-|...|.+|.-+|. .+.++++|+.|-.|++||.|+.++++..-.. .+.|+.+..||. +.++++
T Consensus 197 ~p~--~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 197 IPK--TFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred CCc--ceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHH
Confidence 554 3344444567799999999887 7899999999999999999977677765442 478999999995 335555
Q ss_pred EeCCCcEEEEEcCC---c---eEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCeEE-Ec
Q 000697 1289 GSAKQLIKVFSLEG---E---QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVS-IH 1347 (1348)
Q Consensus 1289 gS~Dg~I~Vwd~~g---~---~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~I~-IW 1347 (1348)
+=.+| .+|-+.+. + .+...+. |. +-+..-.|.....+|||++. |+.++ +|
T Consensus 273 CMh~G-~ki~~~~~~~~e~~~~~~s~~~-hd-------Sl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 273 CMHNG-AKILDSSDKVLEFQIVLPSDKI-HD-------SLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHhcC-ceEEEecccccchheeeecccc-cc-------ceeeccccccccceeeeeeccccceeeee
Confidence 54444 56666432 2 2222222 22 44455556444567888765 77755 66
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.16 E-value=9.2e-09 Score=113.22 Aligned_cols=274 Identities=14% Similarity=0.158 Sum_probs=180.5
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEeccCC
Q 000697 1037 GTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1037 ~I~sl~fspdg~~La-tgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.|.-+.|..|.-+++ ++..++.|.+|++...+-...+.... .++.+++| +||| .+|.+..-+-.|.||.+.+.
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC---CcceeeeE--CCCcceEeeeecceeEEEEEEeccc
Confidence 455666777766554 55678899999999888888888777 79999999 8899 56666777899999999762
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE------------------------------------CCCe
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG------------------------------------EVSS 1158 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg------------------------------------~Dg~ 1158 (1348)
.+ -.+ +-....+.. ++|++++.+.+..+ ++..
T Consensus 125 ~~--~~~------~~pK~~~kg----~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 125 KG--YLL------PHPKTNVKG----YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred ee--EEe------cccccCcee----EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 22 111 111112222 45555554433322 1223
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCe------------------------
Q 000697 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM------------------------ 1214 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~------------------------ 1214 (1348)
+.|||.--+- .+..+. .+-.+..+ .++|.+++++.|+.|+.+|+.+--+-+.
T Consensus 193 laVwd~~Ley-kv~aYe--~~lG~k~v-~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 193 LAVWDNVLEY-KVYAYE--RGLGLKFV-EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred EEEecchhhh-eeeeee--eccceeEE-EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 4556643333 222222 22347788 6789999999999999998855322110
Q ss_pred -----------------------------------eeEeec---CCCCCCCCeEEEEEecCCCCCEEEEEECC--CcEEE
Q 000697 1215 -----------------------------------LVCSTR---PHTQQVERVVGISFQPGLDPAKIVSASQA--GDIQF 1254 (1348)
Q Consensus 1215 -----------------------------------~v~~~~---~~~~h~~~I~sl~~sp~~~g~~LaSgs~D--G~I~I 1254 (1348)
.+...+ ........+.-++|+++ ..++++-... ..+.+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D--s~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD--STYAATRNDKYPNALWL 346 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC--ceEEeeecCCCCceEEE
Confidence 000000 00011234667889998 7788776543 56999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
||++.. .+..+-....+|....|+|..+.|+.+....++++|...|-....... .| -.|..+.|+-.|..
T Consensus 347 Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~G------F~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 347 WDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KG------FNIQKLQWLQPGEF 416 (447)
T ss_pred Eechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CC------ceeeeEEecCCCcE
Confidence 999976 333333456789999999999988888777889999988855444433 22 46899999999999
Q ss_pred EEEEECCCe
Q 000697 1335 LAAGSADAC 1343 (1348)
Q Consensus 1335 Latgs~Dg~ 1343 (1348)
++..+.|..
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 999988864
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=127.07 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=129.9
Q ss_pred cCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC----e---
Q 000697 1145 QQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----M--- 1214 (1348)
Q Consensus 1145 ~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~---~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----~--- 1214 (1348)
+.+-.+++|-..|.|.+.|....+ ..+-+.. -....|+|+.|...+...|+++..+|.+.+||..... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345678888888999999876643 2111111 1224599999998889999999999999999874210 0
Q ss_pred --------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCe
Q 000697 1215 --------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1274 (1348)
Q Consensus 1215 --------------------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~V 1274 (1348)
.+..+.. -.+.|...+|+|+ |++||+.+.||.+||||..+. +.+..++..-+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGL 335 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCC--CceEEEEecCceEEEeeccHH-HHHHHHHhhccce
Confidence 0001101 1347889999999 999999999999999999987 6777777777889
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1275 SALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1275 tsLa~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
.|++|+|||++|++|++|--|.||.+ +.+.+..=++ | .+.|+.++|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-H-------kSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-H-------KSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-c-------ccceeeEeecc
Confidence 99999999999999999999999995 4555555555 4 48899999983
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=5.3e-10 Score=128.53 Aligned_cols=255 Identities=13% Similarity=0.133 Sum_probs=178.2
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec--CC
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QS 1147 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~--~~ 1147 (1348)
...+..|. +.|..|.| ...|..|++|++|..|.+||+.. +...+ +-..+|...|.. ..|-| +.
T Consensus 135 ~~kL~~H~---GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~--~~~~l----~f~SGH~~NvfQ----aKFiP~s~d 199 (559)
T KOG1334|consen 135 QKKLNKHK---GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVS--GSPKL----SFESGHCNNVFQ----AKFIPFSGD 199 (559)
T ss_pred hhcccCCC---Cccceeee--cccCceeeccCccceEEeehhhc--cCccc----ccccccccchhh----hhccCCCCC
Confidence 34567788 89999999 68999999999999999999976 33322 234677777766 33433 34
Q ss_pred CeEEEEECCCeEEEEECCCCceee--eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1148 GYLYASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1148 ~~Ll~gg~Dg~IrVWDl~t~~~~v--~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
..+++++.||.|++=.+.....+. ..+..|.+ +|.-++..+.....|.+++.|+.|.-+|+|......... ....+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~ 277 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREAD 277 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccC
Confidence 578888999999987654333022 23334444 488886666677899999999999999999776322222 22223
Q ss_pred CC---CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCc-----ceEEEecC------CCCeEEEEEeCCCCEEEEEeC
Q 000697 1226 VE---RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD-----AYLTIDAH------RGSLSALAVHRHAPIIASGSA 1291 (1348)
Q Consensus 1226 ~~---~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~-----~v~t~~~h------~~~VtsLa~spdg~~LasgS~ 1291 (1348)
.. ....++.+|. +...+++|+.|..+++||.+.-.+ .+..+..| .-.|++++++.++.-+.+.-.
T Consensus 278 ~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 33 5778999998 667999999999999999985421 12333322 346999999977665555556
Q ss_pred CCcEEEEEc---CC----------ceEEE-EeccCCcccccccCCeEEEEE-eCCCCEEEEEECCCeEEEcC
Q 000697 1292 KQLIKVFSL---EG----------EQLGT-IRYHHPSFMAQKIGSVNCLTF-HPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1292 Dg~I~Vwd~---~g----------~~l~~-i~~~h~~f~~~~~~~Vtslaf-spdg~~Latgs~Dg~I~IWd 1348 (1348)
|-.|++++. .| ..+.. +++ |. ....|.++-| -|...++++|+.=|+|.||+
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG-Hr-----N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG-HR-----NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcc-cc-----cccccceeeeccCccceEEecCccceEEEEe
Confidence 677999973 23 11222 555 44 3345777765 57789999999999999996
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=2.6e-09 Score=116.24 Aligned_cols=157 Identities=23% Similarity=0.363 Sum_probs=114.5
Q ss_pred EEEEecCCCeEEEEEC----------CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEE--EeCCCeEEEE
Q 000697 1140 VVDWQQQSGYLYASGE----------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGSVRLY 1207 (1348)
Q Consensus 1140 ~v~ws~~~~~Ll~gg~----------Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lvs--Gs~DG~Vrvw 1207 (1348)
.+.|+++|.+|++-.. -|...+|.++.....+..+......+|.++ .++|+|+.|++ |..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~-~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV-AWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE-EECcCCCEEEEEEccCCcccEEE
Confidence 4889999988777533 133555655332214555555445569999 67889988754 4467899999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~---DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|++. + .+..+. ...+..+.|+|+ |+++++|+. .|.|.+||.++. +.+.+.. | ..++.++|+|+|+
T Consensus 89 d~~~-~-~i~~~~-----~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr 156 (194)
T PF08662_consen 89 DVKG-K-KIFSFG-----TQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGR 156 (194)
T ss_pred cCcc-c-EeEeec-----CCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCC
Confidence 9973 2 233331 357889999999 999999874 467999999976 6666654 3 3478999999999
Q ss_pred EEEEEeC------CCcEEEEEcCCceEEEEe
Q 000697 1285 IIASGSA------KQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1285 ~LasgS~------Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
++++++. |+.++||+..|+.+....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998864 788999999999887654
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=1.6e-10 Score=131.87 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=171.8
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
+-..+.| +.+|.+|+.|+..|.|-.+|+.+ +..... + .-...|.+ +.|-.+..++ +....+.++|
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t--~~L~~E-----i-~v~Etv~D----v~~LHneq~~-AVAQK~y~yv 195 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVT--KKLHFE-----I-NVMETVRD----VTFLHNEQFF-AVAQKKYVYV 195 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeeccc--ceeeee-----e-ehhhhhhh----hhhhcchHHH-HhhhhceEEE
Confidence 4567888 78999999999999999999976 222211 1 12234555 6666554444 4456678999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
||-..- .+..++.+.. |..+. +-|..-+|++++..|.++--|+.+++ ++..+.+- .+.+..++-+|. ..
T Consensus 196 YD~~Gt--ElHClk~~~~--v~rLe-FLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~---~G~~~vm~qNP~--Na 264 (545)
T KOG1272|consen 196 YDNNGT--ELHCLKRHIR--VARLE-FLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTG---AGRTDVMKQNPY--NA 264 (545)
T ss_pred ecCCCc--EEeehhhcCc--hhhhc-ccchhheeeecccCCceEEEeechhh-hhHHHHcc---CCccchhhcCCc--cc
Confidence 996544 3667766533 78884 45677889999999999999999998 55544333 378888999998 88
Q ss_pred EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEeccCCccccccc
Q 000697 1242 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKI 1320 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~h~~f~~~~~ 1320 (1348)
++-+|..+|+|.+|..... +++..+..|.++|++++++++|.++||.+.|..++|||+.. ..+.++.. .
T Consensus 265 Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---------p 334 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---------P 334 (545)
T ss_pred eEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---------C
Confidence 9999999999999999887 78888889999999999999999999999999999999764 33333322 1
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+...++||..| +||.+ ....|.||.
T Consensus 335 ~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CCcccccccccc-ceeee-cCCeeeeeh
Confidence 356778888655 44443 455788884
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.09 E-value=3e-09 Score=123.61 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=162.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE------EeeCCCCCCCCeEEEEEE---eeCCCCEEEEEeCCCeEEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLN------SFDNHDFPDKGISKLCLV---NELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~------~~~~h~~~~~~ItsL~f~---ns~d~~~L~tgs~DG~IrI 1108 (1348)
+....++-.|++|+-.- ...+.||++..+..+. .+++ ...+|-.|. -.+++--|+.|-.-|.|.+
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g-----t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~ 199 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG-----TSPTCHDFNSFTATPKGLDLLIGFTTGQVQL 199 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC-----CCCceecccccccCCCCcceEEeeccCceEE
Confidence 33444444556655443 3467888877432211 1222 223344441 1245667888888899999
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCc-------------------
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQ------------------- 1168 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~------------------- 1168 (1348)
.|.... .-.++ +.....-..+..+++.|-+.+..++.. -.+|.+++||.+-..
T Consensus 200 idp~~~-~~skl------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 200 IDPINF-EVSKL------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ecchhh-HHHHh------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 887441 11111 111111111223348998876655554 588999999764210
Q ss_pred --------eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000697 1169 --------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1348)
Q Consensus 1169 --------~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g 1240 (1348)
.++..+....+ .|... ++++||++|++.+.||.+||||..+.+ +...++.. -+...|++|+|+ |
T Consensus 273 t~ksk~~rNPv~~w~~~~g-~in~f-~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSY---FGGLLCvcWSPD--G 344 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEG-SINEF-AFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSY---FGGLLCVCWSPD--G 344 (636)
T ss_pred eeeccccCCccceeEeccc-cccce-eEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhh---ccceEEEEEcCC--c
Confidence 01111111222 47788 677899999999999999999999877 55555443 378999999999 9
Q ss_pred CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----------------------------------C--
Q 000697 1241 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----------------------------------A-- 1283 (1348)
Q Consensus 1241 ~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----------------------------------g-- 1283 (1348)
++|++|++|.-|.||.+... +.+..-++|+.+|+.++|.|. +
T Consensus 345 KyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred cEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 99999999999999999987 788888999999999999831 1
Q ss_pred -----------CEEEEEeCCCcEEEEEcCCceEEE
Q 000697 1284 -----------PIIASGSAKQLIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1284 -----------~~LasgS~Dg~I~Vwd~~g~~l~~ 1307 (1348)
-.|.+.+.|-.+.+||++...+..
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhhccc
Confidence 146677889999999987655543
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.2e-08 Score=125.02 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=152.6
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.+||.+. ...+.+..+. ..+.+..| ++|++.|+.++.+ ..|.+||+.. ++.+.+ ......
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~---~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~--g~~~~l------~~~~g~ 249 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSA---EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLAT--GQRELV------ASFRGI 249 (433)
T ss_pred EEEEEECCCC-CCceEeecCC---CccccccC--CCCCCEEEEEecCCCCcEEEEEECCC--CCEEEe------ccCCCC
Confidence 4688999864 4344455555 57888999 7899998887643 4699999865 443333 222222
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CCe--EEEE
Q 000697 1134 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLY 1207 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG~--Vrvw 1207 (1348)
... ..|++++..++.+ +.+| .|++||+.+++ . ..+..+... .... .++++|+.++.++. +|. |.++
T Consensus 250 ~~~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~-~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGA----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-L-TRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccC----ceECCCCCEEEEEEeCCCCceEEEEECCCCC-e-EECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEE
Confidence 223 7899999988654 4444 69999998877 3 444443322 4556 67889998887764 454 6666
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|+.+++ ..+.. .. .......+|+|+ |+.|+..+.++ .|.+||+.++ ... .+. +........|+|+|+
T Consensus 322 dl~~g~-~~~lt--~~--g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 322 AASGGS-AERLT--FQ--GNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred ECCCCC-eEEee--cC--CCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCCCCCCceECCCCC
Confidence 776655 22221 11 234457899999 88887765443 5999999876 333 333 223445679999999
Q ss_pred EEEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1285 IIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1285 ~LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
.++..+.+ +.|.+++.+|.....+.. +. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGRVRQRLVS-AD-------GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCCceEEccc-CC-------CCCCCCccCC
Confidence 87776653 457888888877776654 33 4566677776
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=5.3e-09 Score=116.07 Aligned_cols=245 Identities=15% Similarity=0.228 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VW-d~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
...+++...-|-++-+++.+.|.+++|| +.+.++.-..+....+ .+++++.+ ..+...|++|-.+|++.-+.+..
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y--~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEY--VSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeee--eccceEEEEEEecceEEEEEhhh
Confidence 3557777777888889999999999999 4555555444443332 58899999 67889999999999999998865
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
.-.+.... +....|...+.. +-|+.....+++.|.|..+.---.+.+. .+..+..... -+++.+ +-.
T Consensus 100 dfnkm~~~---r~~~~h~~~v~~----~if~~~~e~V~s~~~dk~~~~hc~e~~~-~lg~Y~~~~~--~t~~~~---d~~ 166 (404)
T KOG1409|consen 100 DFNKMTFL---KDYLAHQARVSA----IVFSLTHEWVLSTGKDKQFAWHCTESGN-RLGGYNFETP--ASALQF---DAL 166 (404)
T ss_pred hhhhcchh---hhhhhhhcceee----EEecCCceeEEEeccccceEEEeeccCC-cccceEeecc--CCCCce---eeE
Confidence 33333333 556678887777 5666677889998988766443344443 2222111000 111100 011
Q ss_pred EEEEEeCCCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1272 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~ 1272 (1348)
+...|...|.|.+-.+.... ..+. ...+|.+.+++++|.+. ...+.+|..|..|.+||+-..........+|.+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~---~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLIT---TFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred EEEecccccceEEEEEeecCCceEE---EEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 44456666776665554332 1222 44578899999999998 999999999999999999876566778889999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|..+..-+..+.+.+++.||.|.+|+.+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999999999999999964
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=121.26 Aligned_cols=283 Identities=12% Similarity=0.191 Sum_probs=197.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
.....|++|+....++++|+.||.++|-.+.+.. .-+++.+|+ ..|.-+.| +.....|-|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~---~sV~vvTW--Ne~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN---ASVMVVTW--NENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc---ceEEEEEe--ccccccccc
Confidence 3568899999999999999999999999876431 123567888 89999999 567788889
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~ 1179 (1348)
...+|.|.||-++...--.+++ ..... +...+++|+.+|..|...-.||.|.|=.++...-.-+.+++..
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi------NnRnK---SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~- 158 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI------NNRNK---SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL- 158 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh------hCcCc---cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe-
Confidence 9999999999998732222222 22222 2223499999999999998898887776665440112233221
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC-------eeeEeecCCCCCCCCeEEEEEecC------CCCCEEEEE
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-------MLVCSTRPHTQQVERVVGISFQPG------LDPAKIVSA 1246 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~-------~~v~~~~~~~~h~~~I~sl~~sp~------~~g~~LaSg 1246 (1348)
...+ .++++...++.+-.+|.+.+||....- +.+.....+......|..++|..+ .+...++.+
T Consensus 159 --l~hv-~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 159 --LAHV-LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred --ccce-eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence 2344 577888888899999999999986431 112211111112234666776422 126789999
Q ss_pred ECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCceEEEEeccCCcccc
Q 000697 1247 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---------QLIKVFSLEGEQLGTIRYHHPSFMA 1317 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---------g~I~Vwd~~g~~l~~i~~~h~~f~~ 1317 (1348)
-.+|.+.|-.-.+...++..-.+ -.+....|+++|.+||.++.+ +.|.+|..-|+.+.+++. ..
T Consensus 236 y~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv-pg---- 308 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV-PG---- 308 (1189)
T ss_pred EcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec-CC----
Confidence 99999998766655455543333 468899999999999998764 367888877888888887 43
Q ss_pred cccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1318 QKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1318 ~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
..|++++|-..|-.+|.+ .|+.|.+
T Consensus 309 ---~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 309 ---SCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ---ceeeeeEEcCCceEEEEE-ecceEEE
Confidence 789999998888777665 3666654
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.1e-08 Score=122.66 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=147.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.++|.+ |.....+..+. ..+.+.+| ++||+.|+..+.+ ..|.+||+.+ ++...+ ......
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP---EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVV------ANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCC---CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCC--CCEEEe------ecCCCC
Confidence 457777774 44444455555 67888999 7899988877643 3599999865 433332 112222
Q ss_pred ccccceEEEEecCCCeEEE-EECCCeEEEEE--CCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CCeEEEEEC
Q 000697 1134 VRCSNVVVDWQQQSGYLYA-SGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1209 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~-gg~Dg~IrVWD--l~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG~VrvwDl 1209 (1348)
+.. ..|+|++..|+. .+.+|...+|. ..++. ...+..+.. .+.+. .++++|+.++..+. +|...+|.+
T Consensus 242 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSA----PAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSG-IDTEP-FFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccc----eEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCC-CCcCe-EEcCCCCEEEEEecCCCCcEEEEE
Confidence 233 899999998875 46677766654 44444 444444332 24555 57889998876654 466666655
Q ss_pred C--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1210 R--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1210 r--~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
. ++. ..+.. ..+ .......|+|+ |++|+..+.++ .|.+||+.++ .. ..+..+ .......|+|+|+
T Consensus 314 ~~~~g~-~~~lt--~~g--~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 314 PASGGA-AQRVT--FTG--SYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATG-QV-TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred ECCCCc-eEEEe--cCC--CCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCC-CCccCceECCCCC
Confidence 4 433 22221 111 33446789999 88888777654 5999999876 33 333322 2346789999999
Q ss_pred EEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1285 IIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1285 ~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.|+.++.++ .+.+.+.+|.....+.. +. +.+...+|+|.
T Consensus 384 ~l~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp~ 425 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSSDGRIKQRLSV-QG-------GDVREPSWGPF 425 (427)
T ss_pred EEEEEEecCCCEEEEEEECCCCceEEeec-CC-------CCCCCCccCCC
Confidence 887776544 35556677877666654 33 55677788774
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=6.3e-08 Score=118.92 Aligned_cols=234 Identities=10% Similarity=0.056 Sum_probs=152.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEeccCCCCceeEEeeeecccCCCCc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1133 (1348)
..|.+||.+ +...+.+..+. ..+.+..| ++||+.|+..+. +..|.+||+.+ +..+.+ ..+...
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~---~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l------~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS---SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLET--GQRELV------GNFPGM 247 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC---CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCC--CcEEEe------ecCCCc
Confidence 478888886 44445566666 68999999 789998887753 46899999965 443333 333334
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEE
Q 000697 1134 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLY 1207 (1348)
Q Consensus 1134 V~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~Vrvw 1207 (1348)
+.. ..|+|++..|+.+ +.+| .|.+||+.++. ...+..+.. ...+. .++++|+.++..+. +| .|.++
T Consensus 248 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~-~~~~~-~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFA----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPA-IDTSP-SYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccC----cEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCC-ccCce-eEcCCCCEEEEEECCCCCCeEEEE
Confidence 444 7899999987654 4454 48888988876 344544333 24555 67889998887764 33 68888
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC
Q 000697 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1208 Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
|+..++ ..+.. . +...+....|+|+ |+.|+..+.+ ..|.+||+..+ ....+. ....+....|+|+|+
T Consensus 320 d~~g~~-~~~lt-~---~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 320 NADGSN-PRRIS-F---GGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred ECCCCC-eEEee-c---CCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCCCCCeECCCCC
Confidence 887665 32222 1 1245667889999 8888776643 25888887644 233333 233467889999999
Q ss_pred EEEEEeCC------CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1285 IIASGSAK------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1285 ~LasgS~D------g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
.|+..+.+ ..+.++|++|.....+.. . +.+...+|+|.
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~--~-------~~~~~p~Wsp~ 433 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT--P-------GDASDPAWSPL 433 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC--C-------CCccCcccCCC
Confidence 87765442 257788888766655432 1 33556677763
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.7e-08 Score=111.06 Aligned_cols=237 Identities=14% Similarity=0.191 Sum_probs=150.7
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.+..++| ++.-..++++..|-+|++|+-.. +....+. ......|++ ++|-|.+..-++.+.-+-|.+
T Consensus 100 dlr~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtc----lawRPlsaselavgCr~gIci 166 (445)
T KOG2139|consen 100 DLRGVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTC----LAWRPLSASELAVGCRAGICI 166 (445)
T ss_pred ceeeEee--chhhhhhhhhccCcEEEEeccCC-CCCceec------chhhcceeE----EEeccCCcceeeeeecceeEE
Confidence 4667788 55556788889999999999754 1111111 122334555 999998776666655566999
Q ss_pred EECCCCce-----------eeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1162 WDLEKEQQ-----------MVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1162 WDl~t~~~-----------~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
|....... +.+.++.....+|++| .++++|..+++++ .|..|.|||..++...--..+. .+.+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsm-qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~ 241 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSM-QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGF 241 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEE-EEcCCCCEEeecccCcceEEEEcCCCCCcccccccC----CCce
Confidence 97653220 1112222223469999 6677888888765 5678999999988733222222 3689
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCceEEE
Q 000697 1230 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGT 1307 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~l~~ 1307 (1348)
+-+.|+|+ +.+|.+++-|+..++|.........+ .....+.|....|+|+|++|.-... |.-.+|. ..++....
T Consensus 242 slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 242 SLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred eeEEEcCC--CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 99999999 99999999999999996553322222 2233558999999999996544332 3334554 22221111
Q ss_pred -----EeccCC------cc-----cccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1308 -----IRYHHP------SF-----MAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1308 -----i~~~h~------~f-----~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
++. +. .. ..--.+...+++|.|.|.+||+.-..
T Consensus 318 ~~~~~~k~-~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 318 LRPQSIKR-VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cCccccee-eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 000 00 00 00124678999999999999987653
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=2.1e-08 Score=111.22 Aligned_cols=258 Identities=15% Similarity=0.196 Sum_probs=171.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC-CceeEEeeeecccCCCCcc---cc-----cceEEEEecCCC--e
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGV---RC-----SNVVVDWQQQSG--Y 1149 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V---~s-----i~~~v~ws~~~~--~ 1149 (1348)
.-|+++.| ..+|++|+||..+|.|.++.-.... ++....+ .++.|...- .+ -.-.+.|.++++ .
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t---~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQT---EFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeee---eeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 46899999 7899999999999999999764422 2222332 233333221 11 111267876654 5
Q ss_pred EEEEECCCeEEEEECCCCc----------------------------------eeeeeecCCCCCCeEEEEEecCCCCEE
Q 000697 1150 LYASGEVSSIMLWDLEKEQ----------------------------------QMVNPIPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~----------------------------------~~v~~l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
++..+.|++|++|-+.... .+.+.+...+..-|.++ ..+.++..+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI-S~NsD~Et~ 179 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI-SVNSDKETF 179 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee-eecCccceE
Confidence 7788899999999875322 01112222233347888 566677777
Q ss_pred EEEeCCCeEEEEECCCCCeeeEeecCCC----CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc---eEEEe
Q 000697 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHT----QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTID 1268 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~~~~v~~~~~~~----~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~---v~t~~ 1268 (1348)
+++ .|=.|.+|.+.-......+..... .-..-|++..|+|. ..+.++-.+..|+|++-|+|...-+ .+.+.
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 765 577899999885443333331111 11245889999998 7888999999999999999954211 11111
Q ss_pred c------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--CCceEEEEeccCCccc--------ccccCCeEEE
Q 000697 1269 A------------HRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFM--------AQKIGSVNCL 1326 (1348)
Q Consensus 1269 ~------------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~--~g~~l~~i~~~h~~f~--------~~~~~~Vtsl 1326 (1348)
. --..|+.+.|+++|+++++-+. -+|++||+ +.+++.++.. |...+ ....-.-..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhheeEE
Confidence 1 1236889999999999998655 58999994 6778888777 65321 1222334678
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~Dg~I~IWd 1348 (1348)
+|+.++.+++||+..+.+++|+
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEcCCcceEecccccceEEEec
Confidence 9999999999999999999885
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=8.7e-08 Score=117.30 Aligned_cols=215 Identities=11% Similarity=0.055 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCC--eEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAAD---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNG--NIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs---~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG--~IrIW 1109 (1348)
..+...+|+|||+.|+..+ .+..|.+|++.+++.... .... ..+....| ++||+.|+.. +.+| .|.+|
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~---~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC---CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEE
Confidence 4678999999999888654 245799999988754332 2222 23446788 8899988765 4455 47888
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC-Ce--EEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SS--IMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D-g~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ ++.+. +..+...+.. ..|+|++..|+.++++ |. |.++|+.++. ...+...... ..+.
T Consensus 273 d~~t--g~~~~------lt~~~~~~~~----~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~-~~~~- 336 (429)
T PRK03629 273 DLAS--GQIRQ------VTDGRSNNTE----PTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQ-NQDA- 336 (429)
T ss_pred ECCC--CCEEE------ccCCCCCcCc----eEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCC-ccCE-
Confidence 8755 33322 2223333333 8999999988877653 44 5555776665 3333322222 4455
Q ss_pred EecCCCCEEEEEeCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc---EEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD---IQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~---I~IWDlr~~ 1260 (1348)
.++++|+.++..+.+ ..|.+||+.+++ ... +... .......|+|+ |+.|+.++.++. +.++++..
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~-Lt~~----~~~~~p~~SpD--G~~i~~~s~~~~~~~l~~~~~~G- 407 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQV-LTDT----FLDETPSIAPN--GTMVIYSSSQGMGSVLNLVSTDG- 407 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-eEE-eCCC----CCCCCceECCC--CCEEEEEEcCCCceEEEEEECCC-
Confidence 678999988876543 358889998776 222 2111 12346789999 999988887765 66777752
Q ss_pred CcceEEEecCCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spd 1282 (1348)
.....+.+|.+.+...+|+|-
T Consensus 408 -~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCeEECccCCCCcCCcccCCC
Confidence 466777788888899999873
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.97 E-value=2.6e-08 Score=108.38 Aligned_cols=144 Identities=12% Similarity=0.207 Sum_probs=100.5
Q ss_pred EecCCCCEEEEEeC----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE--EECCCcEEE
Q 000697 1187 ASQVHGGQLAAGFV----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS--ASQAGDIQF 1254 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~----------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaS--gs~DG~I~I 1254 (1348)
.+++.|+.|+.-.. -|...+|.++.....+..+.. ...+.|.+++|+|+ |+.|++ |..++.|.+
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l--~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL--KKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec--cCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 45566665554322 244666666544433433322 12357999999999 777654 446789999
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1330 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafsp 1330 (1348)
||++ . +.+..+. ...+..+.|+|+|++|++|+. .|.|.+||.+ .+.+...+. ..++.++|+|
T Consensus 88 yd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----------~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----------SDATDVEWSP 153 (194)
T ss_pred EcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----------CcEEEEEEcC
Confidence 9997 3 5666664 567889999999999999874 3679999965 444444432 3578999999
Q ss_pred CCCEEEEEEC------CCeEEEcC
Q 000697 1331 YQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1331 dg~~Latgs~------Dg~I~IWd 1348 (1348)
+|++|++++. |+.++||+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEE
Confidence 9999999875 78888885
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.5e-07 Score=115.66 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=134.6
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.+||... ...+. +..+...+.. ..|+|++..|+..+ .+..|.+||+.+++ . ..+....+
T Consensus 182 ~~l~~~d~dg--~~~~~------lt~~~~~v~~----p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g- 246 (435)
T PRK05137 182 KRLAIMDQDG--ANVRY------LTDGSSLVLT----PRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPG- 246 (435)
T ss_pred eEEEEECCCC--CCcEE------EecCCCCeEe----eEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCC-
Confidence 3678888643 22222 3455555655 89999999888775 34689999998877 3 33333333
Q ss_pred CeEEEEEecCCCCEEE-EEeCCCe--EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000697 1181 SISALTASQVHGGQLA-AGFVDGS--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lv-sGs~DG~--VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG--~I~I 1254 (1348)
.+.+. .++++|+.++ +.+.+|. |.+||+.++. ... + ..+........|+|+ |+.|+..+. +| .|.+
T Consensus 247 ~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~-L---t~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTR-L---TDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCc-EECCCCCEEEEEEecCCCceEEEEECCCCc-eEE-c---cCCCCccCceeEcCC--CCEEEEEECCCCCCeEEE
Confidence 25566 6788998775 5555555 7777888776 322 2 223355677899999 888777663 44 5777
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
||+..+ ....+..+.+.+....|+|+|+.|+..+.+ ..|.+||.++.....+.. . ..+....|+|+
T Consensus 319 ~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~--~-------~~~~~p~~spD 387 (435)
T PRK05137 319 MNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS--G-------FLVEGPTWAPN 387 (435)
T ss_pred EECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC--C-------CCCCCCeECCC
Confidence 787654 334444445567778999999998876543 368888877665544432 1 23567899999
Q ss_pred CCEEEEEEC
Q 000697 1332 QVLLAAGSA 1340 (1348)
Q Consensus 1332 g~~Latgs~ 1340 (1348)
|++|+..+.
T Consensus 388 G~~i~~~~~ 396 (435)
T PRK05137 388 GRVIMFFRQ 396 (435)
T ss_pred CCEEEEEEc
Confidence 998877655
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1e-07 Score=116.67 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=121.9
Q ss_pred cCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEE-EEeCCCe
Q 000697 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGS 1203 (1348)
Q Consensus 1128 ~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lv-sGs~DG~ 1203 (1348)
..+...+.+ .+|+|++..|+.++.+ ..|.+||+.+++ .. .+....+. +.+. .++++|+.++ +.+.+|.
T Consensus 192 ~~~~~~v~~----p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~-~l~~~~g~-~~~~-~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 192 LSSPEPIIS----PAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RR-VVANFKGS-NSAP-AWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ccCCCCccc----ceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EE-EeecCCCC-ccce-EECCCCCEEEEEEccCCC
Confidence 344455555 8999999998877632 469999999887 43 23222222 4555 6788998876 5677887
Q ss_pred EEEEECC--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCCcceEEEecCCCCeEEEEEe
Q 000697 1204 VRLYDVR--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1280 (1348)
Q Consensus 1204 VrvwDlr--~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~s 1280 (1348)
..+|.+. .+. ...+ ..+........|+|+ |+.|+..+. +|...+|.+.........+..+.......+|+
T Consensus 264 ~~Iy~~d~~~~~--~~~l---t~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 264 SQIYTVNADGSG--LRRL---TQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRIS 336 (427)
T ss_pred ceEEEEECCCCC--cEEC---CCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEEC
Confidence 6666543 333 2222 223345667889999 887776554 56777776642222233332233334567899
Q ss_pred CCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1281 RHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1281 pdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
|+|++|+..+.++ .|.+||+.+.....+.. . .......|+|+|++|+.++.++
T Consensus 337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 337 PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--------CCccCceECCCCCEEEEEEecC
Confidence 9999998776554 69999976555554433 1 1235679999999888877643
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=3.8e-07 Score=109.00 Aligned_cols=266 Identities=17% Similarity=0.227 Sum_probs=161.3
Q ss_pred CEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1048 PIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1048 ~~L-atgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+++ ++-..+|.|.|.|.++.+.+.++.... ..-..+.| ++|++++++++.||.|.++|+.+ .+ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~--~~--~v~~--- 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKF--SPDGRYLYVANRDGTVSVIDLAT--GK--VVAT--- 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE---TT-SSEEEEEETTSEEEEEETTS--SS--EEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEe--cCCCCEEEEEcCCCeEEEEECCc--cc--EEEE---
Confidence 344 445578999999999999999998765 33344667 89999999999999999999976 22 3322
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC------CCCCeEEEEEecCCCCEEEEEe
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~------~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
+.. .....+ ++++++|.+++++. ..+.+.++|.++.+ .+..++.. ..+.+.++ ..++....++..-
T Consensus 74 i~~-G~~~~~----i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aI-v~s~~~~~fVv~l 146 (369)
T PF02239_consen 74 IKV-GGNPRG----IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAI-VASPGRPEFVVNL 146 (369)
T ss_dssp EE--SSEEEE----EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEE-EE-SSSSEEEEEE
T ss_pred Eec-CCCcce----EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeE-EecCCCCEEEEEE
Confidence 221 112233 88899999999886 78999999999998 88887653 23347778 5566677566555
Q ss_pred C-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCcceEEEe----cCCCC
Q 000697 1200 V-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTID----AHRGS 1273 (1348)
Q Consensus 1200 ~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~~~~~v~t~~----~h~~~ 1273 (1348)
. .|.|.+.|....+......-. .........|+|+ +++++.+ ..+..|-++|..+. +.+..+. .|...
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~---~g~~~~D~~~dpd--gry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIK---VGRFPHDGGFDPD--GRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGP 220 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TT--SSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETT
T ss_pred ccCCeEEEEEeccccccceeeec---ccccccccccCcc--cceeeecccccceeEEEeeccc-eEEEEeeccccccccc
Confidence 5 488999998766533222111 1256778999999 8877664 55678999999987 5555543 23444
Q ss_pred eEEEEEeCCC-CEEEEE---------eCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE---E
Q 000697 1274 LSALAVHRHA-PIIASG---------SAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG---S 1339 (1348)
Q Consensus 1274 VtsLa~spdg-~~Lasg---------S~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg---s 1339 (1348)
+..+ .||.. .+.+++ -....+.+|+ .+.+.+.++.. .. ++ .-+.-||+++++.+. +
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G-------~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QG-------GG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SS-------SS---EE--TT-SEEEEE-TT-
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC-CC-------Cc-ceeecCCCCccEEeeccCC
Confidence 4443 34432 222222 1123455666 45678888876 32 34 677889999999988 3
Q ss_pred C-CCeEEEcC
Q 000697 1340 A-DACVSIHS 1348 (1348)
Q Consensus 1340 ~-Dg~I~IWd 1348 (1348)
. .++|.|+|
T Consensus 291 ~~~~~v~viD 300 (369)
T PF02239_consen 291 PDADTVQVID 300 (369)
T ss_dssp SSHT-EEEEE
T ss_pred CCCceEEEEE
Confidence 3 46777765
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.4e-07 Score=110.99 Aligned_cols=277 Identities=11% Similarity=0.165 Sum_probs=173.5
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEE-------E---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAA-------D---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latg-------s---~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1099 (1348)
|..... .+.++.|+|-|.+|.+- . ..-.+.+|+.+++.....++... ..-++..| +.|..+ ++
T Consensus 69 lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~---Q~~W~~qf--s~dEsl-~a 141 (566)
T KOG2315|consen 69 LCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM---QNGWVPQF--SIDESL-AA 141 (566)
T ss_pred EEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh---hcCccccc--ccchhh-hh
Confidence 333333 78899999999988762 1 13457899999976666665544 22257888 455543 33
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEEE-----ECCCeEEEEECCCCceeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYAS-----GEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~g-----g~Dg~IrVWDl~t~~~~v~ 1172 (1348)
--..+.+.+|++...++... .-|...+.. +.+++... .+++- |.-+.|+||-..-+. .-.
T Consensus 142 rlv~nev~f~~~~~f~~~~~--------kl~~~~i~~----f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~ 208 (566)
T KOG2315|consen 142 RLVSNEVQFYDLGSFKTIQH--------KLSVSGITM----LSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQ 208 (566)
T ss_pred hhhcceEEEEecCCccceee--------eeeccceee----EEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccc
Confidence 23345799999865222211 113344444 66666532 23221 344679999876322 111
Q ss_pred eecC---CCCCCeEEEEEecCCCCEEEEEeC--C---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1173 PIPS---SSDCSISALTASQVHGGQLAAGFV--D---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1173 ~l~~---~~~~~VtsL~~~s~dg~~LvsGs~--D---------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
.+.. -....|.-. |......+|+..+. | .+++++++......+. + ...++|.++.|+|+
T Consensus 209 ~~a~ksFFkadkvqm~-WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L----~k~GPVhdv~W~~s- 281 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMK-WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-L----LKEGPVHDVTWSPS- 281 (566)
T ss_pred hhhhccccccceeEEE-eccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-c----CCCCCceEEEECCC-
Confidence 1110 001113332 43333334443332 2 4688888884443332 2 12489999999999
Q ss_pred CCCEEEE--EECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEE-cCCceEEEEeccC
Q 000697 1239 DPAKIVS--ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFS-LEGEQLGTIRYHH 1312 (1348)
Q Consensus 1239 ~g~~LaS--gs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd-~~g~~l~~i~~~h 1312 (1348)
++.+++ |-.--.+.|||++. .++..+. .++-+++-|+|+|++++.++- -|.|-||| .+-+.+..+..
T Consensus 282 -~~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-- 354 (566)
T KOG2315|consen 282 -GREFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-- 354 (566)
T ss_pred -CCEEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc--
Confidence 776654 44567899999994 4666654 677789999999998887765 47899999 45677777776
Q ss_pred CcccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1313 PSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1313 ~~f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
..-+-+.|+|||.+++|++. |+.++||+
T Consensus 355 --------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 355 --------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred --------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34577899999999998876 78888884
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.91 E-value=4.2e-06 Score=99.61 Aligned_cols=276 Identities=14% Similarity=0.173 Sum_probs=171.7
Q ss_pred EEEEECC----CcEEEEEC--CCCcEE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----CCeEEEEeccCCCCc
Q 000697 1050 VVAADEN----ERIKIWNY--EEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVASC----NGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1050 Latgs~d----g~I~VWd~--~t~~~l--~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----DG~IrIWdl~~~~~~ 1117 (1348)
+++|+.. +.|.+|++ ++++.. ..+... ...+.+++ ++++++|+++.. +|.|..|++....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES----SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC----CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence 4566655 78999987 444332 222222 35677888 789999999877 579999999774455
Q ss_pred eeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee---eec---------CCCCCCeEE
Q 000697 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN---PIP---------SSSDCSISA 1184 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~---~l~---------~~~~~~Vts 1184 (1348)
.+.+..... . ..... .++.++++.+++++. .+|.|.++++........ .+. ........+
T Consensus 76 L~~~~~~~~-~--g~~p~----~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPS-G--GSSPC----HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEE-S--SSCEE----EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeecc-C--CCCcE----EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 555532221 1 11112 378889999999997 689999999987420211 111 112233567
Q ss_pred EEEecCCCCEEEEEe-CCCeEEEEECCCCCe-ee--EeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCC
Q 000697 1185 LTASQVHGGQLAAGF-VDGSVRLYDVRTPDM-LV--CSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRN 1259 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs-~DG~VrvwDlr~~~~-~v--~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~ 1259 (1348)
+ .++|+++++++.. ....|.+|++..... +. ..+.. .....-+.+.|+|+ ++++++. ..++.|.+|++..
T Consensus 149 v-~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pd--g~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 149 V-VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPD--GKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp E-EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TT--SSEEEEEETTTTEEEEEEEET
T ss_pred E-EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCC--cCEEEEecCCCCcEEEEeecc
Confidence 7 6788988777654 456899999986552 21 11111 22467899999999 7766554 4678899999982
Q ss_pred CC---cceEEEecC------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC--ceEEEEeccCCcccccccCCeEEEE
Q 000697 1260 HK---DAYLTIDAH------RGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1260 ~~---~~v~t~~~h------~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~g--~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
.. +.+..+... ......+.++|+|++|.++. .+..|.+|+++. ..+..+.. .. ........++
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~~Pr~~~ 298 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGKFPRHFA 298 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSSSEEEEE
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCCCccEEE
Confidence 21 222233321 12578999999999877654 567899999732 23333322 11 0123478999
Q ss_pred EeCCCCEEEEEEC-CCeEEEcC
Q 000697 1328 FHPYQVLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1328 fspdg~~Latgs~-Dg~I~IWd 1348 (1348)
++|+|++|+++.. ++.|.+|+
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEE
Confidence 9999999998876 67888873
No 244
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=5.2e-09 Score=134.71 Aligned_cols=194 Identities=15% Similarity=0.295 Sum_probs=149.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..|.++.=||...+-+||+.||.|++|.|..++.+..++...+ ..|+.+.| +..|+.+..+..||.+.+|....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCceeeeccCCceeecccCC--
Confidence 5677888899999999999999999999999999998886553 78999999 67899999999999999999842
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEecC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~Dg~IrVWDl~t~~--~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+.. ...+.|...... +.|- +..++++| +++.+.+||..... .++. ..|.++ ++++ .+-|
T Consensus 2283 ---k~~---~s~qchnk~~~D----f~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l-~~~P 2346 (2439)
T KOG1064|consen 2283 ---KPY---TSWQCHNKALSD----FRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVL-AYAP 2346 (2439)
T ss_pred ---cce---eccccCCccccc----eeee--ehhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEE-EEcC
Confidence 223 334567766666 4443 24555553 67899999976443 1333 455454 9999 6678
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
..++|++|+.+|.|++||+|..+ ..+.++. ++ . ..++++|+..|.++||++... ..++++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrq-l~h~~~~------------~~-~--~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA------------LD-T--REYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHH-HHHHhhh------------hh-h--hheeeccCcccceEEEEcccc-chhhcCc
Confidence 89999999999999999999877 4444321 33 3 679999999999999999976 5555554
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=4.5e-07 Score=110.58 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
...|.++|...+ ..+.+..+. ..+.+..| ++||++|+.++.+ ..|.+||+.+ ++...+ ..+..
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSR---EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLAT--GQREKV------ASFPG 234 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCC---CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEe------ecCCC
Confidence 445777787633 344455455 56778888 8899999887654 4799999866 433332 22233
Q ss_pred cccccceEEEEecCCCeEEEE-ECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEE
Q 000697 1133 GVRCSNVVVDWQQQSGYLYAS-GEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRL 1206 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~g-g~D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~Vrv 1206 (1348)
.+.. ..|++++..|+.+ +.+ ..|++||+.++. ...+..+... .... .++++|+.|+..+.. | .|.+
T Consensus 235 ~~~~----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGA----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccc----eEECCCCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 3333 7899999888765 333 459999998776 3344433222 3444 567889888766543 3 5788
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1207 wDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG---~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
+|+.+++ ..... .+...+....|+|+ |+.++.++.++ .|.+||+.++ . ...+... .......|+|+|
T Consensus 307 ~d~~~~~-~~~l~----~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~-~~~~~p~~spdg 376 (417)
T TIGR02800 307 MDADGGE-VRRLT----FRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDT-GLDESPSFAPNG 376 (417)
T ss_pred EECCCCC-EEEee----cCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC-C-eEEccCC-CCCCCceECCCC
Confidence 8887665 22221 12356778899999 88888888775 7889998864 2 3333322 234456899999
Q ss_pred CEEEEEeCCC---cEEEEEcCCceEEEEec
Q 000697 1284 PIIASGSAKQ---LIKVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1284 ~~LasgS~Dg---~I~Vwd~~g~~l~~i~~ 1310 (1348)
+.|+..+.++ .+.+.+.+|+....+..
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 9887776653 46666777877666654
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=9.8e-09 Score=132.25 Aligned_cols=224 Identities=18% Similarity=0.244 Sum_probs=158.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|.++.- ++...+-+||+.||.|++|.... ...+.+|++... ..|.. +.|+.+|+..-++..||.+.+
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~--s~vtr----~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGN--SRVTR----SRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccC----CCeEEEeeccCc--chhhh----hhhcccCCceeeeccCCceee
Confidence 3555544 56778899999999999999844 344555665443 55666 678889999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~ 1238 (1348)
|.+. .+ .....+.|... .....+.. ..+++++ .++.+.+||......... .++.|.+.++++++-|.
T Consensus 2278 ~q~~-pk-~~~s~qchnk~-~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2278 WQAS-PK-PYTSWQCHNKA-LSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSL---VHTCHDGGATVLAYAPK- 2347 (2439)
T ss_pred cccC-Cc-ceeccccCCcc-ccceeeee---hhhhccccCCCCCcccchhcccCcccce---eeeecCCCceEEEEcCc-
Confidence 9987 44 67778887665 66664442 4555543 478999999875542211 23578899999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-ceEEEEecc--CCcc
Q 000697 1239 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYH--HPSF 1315 (1348)
Q Consensus 1239 ~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-~~l~~i~~~--h~~f 1315 (1348)
...|++|+.+|.|++||++.. +.+++++. ++ ...++++|+..|.|+||++++ ..+.++... +.+|
T Consensus 2348 -~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2348 -HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred -ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 999999999999999999976 67666664 45 567999999999999999664 333333221 3444
Q ss_pred cccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1316 MAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1316 ~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
.. +.+ ..+-.. ..+.|.+|+.||+
T Consensus 2416 Fr-~~g--~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FR-NIG--MQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred hh-hcC--ceeeec-cCceEEEecCCCC
Confidence 22 222 222222 3356777777874
No 247
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=3.6e-08 Score=107.72 Aligned_cols=255 Identities=15% Similarity=0.257 Sum_probs=169.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----cEEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVA 1100 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-----~~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tg 1100 (1348)
...|+++.|...|.+|++|+..|.|.+|.-+.. +....|++|.+. ...|..+.|.-......++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 367999999999999999999999999976532 334457777642 136888999643444567778
Q ss_pred eCCCeEEEEeccCCCCceeEE-------------------------------------eeeecc-cCCCCcccccceEEE
Q 000697 1101 SCNGNIRIWKDYDQKDKQKLV-------------------------------------TAFSSI-QGHKPGVRCSNVVVD 1142 (1348)
Q Consensus 1101 s~DG~IrIWdl~~~~~~~~lv-------------------------------------s~~~~l-~~h~~~V~si~~~v~ 1142 (1348)
+.|.+|++|.++... .+++ .+.+.. ..|...+.+ +.
T Consensus 106 tNdktiKlWKiyekn--lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS----iS 179 (460)
T COG5170 106 TNDKTIKLWKIYEKN--LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS----IS 179 (460)
T ss_pred cCCceeeeeeeeccc--chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee----ee
Confidence 899999999997631 1110 000111 223333333 56
Q ss_pred EecCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCC----CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000697 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC----SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1216 (1348)
Q Consensus 1143 ws~~~~~Ll~gg~Dg~IrVWDl~t~~~--~v~~l~~~~~~----~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v 1216 (1348)
++.+...+++ .+|=.|.+|+++.... .+..++.|.-. -|++-.+.+...+.|.-.+..|.|++-|+|...-+.
T Consensus 180 ~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 180 FNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 6666555554 5667799998875431 23444444221 256665555567788889999999999999443111
Q ss_pred E---eec---------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC------------C
Q 000697 1217 C---STR---------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------------G 1272 (1348)
Q Consensus 1217 ~---~~~---------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~------------~ 1272 (1348)
. .+. .+.+-.+.|..+.|++. |+++++-+. -+|+|||.+..+.++.++.-|. .
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 1 110 01122357889999998 999988765 4899999999889999997663 2
Q ss_pred Ce---EEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1273 SL---SALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1273 ~V---tsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.| ..+.|+.+.+.+.+|+.....-+|-
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeec
Confidence 22 3577888888888888877666665
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2.2e-07 Score=113.98 Aligned_cols=203 Identities=16% Similarity=0.102 Sum_probs=129.6
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~---Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.+||... ..... +..+...+.+ ..|+|++..|+.++. ...|++||+.+++ .. .+....+
T Consensus 184 ~~l~i~D~~g--~~~~~------lt~~~~~v~~----p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~-~l~~~~g- 248 (433)
T PRK04922 184 YALQVADSDG--YNPQT------ILRSAEPILS----PAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RE-LVASFRG- 248 (433)
T ss_pred EEEEEECCCC--CCceE------eecCCCcccc----ccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EE-EeccCCC-
Confidence 4688888743 22222 3344445555 899999999888763 3469999998876 32 2322222
Q ss_pred CeEEEEEecCCCCEEE-EEeCCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCc--EEE
Q 000697 1181 SISALTASQVHGGQLA-AGFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGD--IQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lv-sGs~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~--I~I 1254 (1348)
...+. .++++|+.++ +.+.+| .|++||+.+++ ... + ..+.......+|+|+ |+.|+.++ .+|. |.+
T Consensus 249 ~~~~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~-l---t~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 249 INGAP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTR-L---TNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CccCc-eECCCCCEEEEEEeCCCCceEEEEECCCCC-eEE-C---ccCCCCccceEECCC--CCEEEEEECCCCCceEEE
Confidence 23455 6788998775 445555 59999998876 322 2 223345567899999 88877666 4455 555
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+|+..+ + ...+..+.......+|+|+|+.|+..+.++ .|.+||..+.....+.. . .......|+|+
T Consensus 321 ~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~--~-------~~~~~p~~spd 389 (433)
T PRK04922 321 VAASGG-S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP--G-------SLDESPSFAPN 389 (433)
T ss_pred EECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC--C-------CCCCCceECCC
Confidence 666554 2 333333334455789999999988765433 68999976555544432 1 12345689999
Q ss_pred CCEEEEEEC
Q 000697 1332 QVLLAAGSA 1340 (1348)
Q Consensus 1332 g~~Latgs~ 1340 (1348)
|++|+..+.
T Consensus 390 G~~i~~~s~ 398 (433)
T PRK04922 390 GSMVLYATR 398 (433)
T ss_pred CCEEEEEEe
Confidence 998877665
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.2e-07 Score=110.34 Aligned_cols=196 Identities=15% Similarity=0.240 Sum_probs=141.9
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccc--cceEEEEec--------------CCCeEEEEEC
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC--SNVVVDWQQ--------------QSGYLYASGE 1155 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s--i~~~v~ws~--------------~~~~Ll~gg~ 1155 (1348)
+...+++....||.+|||+...++-..+.. ....-.+...+ .++.+..+| +...++-|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 456789999999999999986632222211 11111111111 001111111 3345666778
Q ss_pred CCeEEEEECCCCceeeeeec-CCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1156 VSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1156 Dg~IrVWDl~t~~~~v~~l~-~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.|.|.+|++..++ ....+. +.+...|+++ .+..+-..|.+++.|+.+..|+..... ..+.++.. ...+.++++
T Consensus 79 ~g~v~~ys~~~g~-it~~~st~~h~~~v~~~-~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~---~~~~~sl~i 152 (541)
T KOG4547|consen 79 QGSVLLYSVAGGE-ITAKLSTDKHYGNVNEI-LDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQ---KPLVSSLCI 152 (541)
T ss_pred CccEEEEEecCCe-EEEEEecCCCCCcceee-ecccccCceEecCCceeEEEEecccce-eeeeeccC---CCccceEEE
Confidence 8999999999998 777776 4556668988 556677899999999999999999887 66766544 478999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-----CCEEEE-EeCCCcEEEEEcCC
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----APIIAS-GSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-----g~~Las-gS~Dg~I~Vwd~~g 1302 (1348)
+|+ |..+++|+ +.|++||+.+. +.+.+|.+|.++|+++.|--. |.++.+ ...+.-|.+|-.++
T Consensus 153 s~D--~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPD--GKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCC--CCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999 99999987 68999999998 899999999999999999877 555544 45566678887543
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=6.9e-09 Score=119.65 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=155.9
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.+..|.+|. ..|..+.-+ .+.+-+++++.|++|++|.+.....+.....+.-+++.|+.+|.++++ -.+..
T Consensus 727 rL~nf~GH~---~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf----L~~lr 797 (1034)
T KOG4190|consen 727 RLCNFTGHQ---EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF----LADLR 797 (1034)
T ss_pred eeecccCcH---HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee----eeccc
Confidence 345677888 777777763 467789999999999999997643333322233567889999999544 33433
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeec-C---CCCCCeEEEEEecCCCCEEEEE-eCCCeEEEEECCCCCeeeEeecCC-
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIP-S---SSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH- 1222 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~-~---~~~~~VtsL~~~s~dg~~LvsG-s~DG~VrvwDlr~~~~~v~~~~~~- 1222 (1348)
+ +++.||.|.+||.-.+. .+..+. . .....|.|+ -+.+..++++| +...+|+++|.|..+ .++.++..
T Consensus 798 ~--i~ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl--~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcn 871 (1034)
T KOG4190|consen 798 S--IASCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCL--ENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCN 871 (1034)
T ss_pred e--eeeccCcceeecccccc-hhHhhhcCcccCCCceeEec--ccCcchheeeeccchhhheeeeccccc-ceeeEEecc
Confidence 3 34568889999987666 444222 1 122234554 23356677776 678899999999876 44444433
Q ss_pred -CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEE-EE-
Q 000697 1223 -TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV-FS- 1299 (1348)
Q Consensus 1223 -~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~V-wd- 1299 (1348)
.+....+.++++.+. |++++.|-.+|.|.+.|.|++ +.+..++.....+..++- |....++....|.++.| |.
T Consensus 872 a~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehh
Confidence 345577899999998 999999999999999999998 778777765554444443 45567788888889988 88
Q ss_pred cCCceEEEEec
Q 000697 1300 LEGEQLGTIRY 1310 (1348)
Q Consensus 1300 ~~g~~l~~i~~ 1310 (1348)
.+|....+.+.
T Consensus 948 ldgimh~q~kp 958 (1034)
T KOG4190|consen 948 LDGIMHLQDKP 958 (1034)
T ss_pred cCCeeeeccCC
Confidence 67766655554
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=9.6e-06 Score=96.59 Aligned_cols=252 Identities=14% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeE
Q 000697 1036 KGTKTALLQPFSPIVVAADE----NERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~----dg~I~VWd~~t~----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~I 1106 (1348)
..+.-++++|++++|.++.+ +|.|..|++... +.+.+..... .....+++ ++++++|+++. .+|.|
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~--~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAV--DPDGRFLYVANYGGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEE--CTTSSEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEE--ecCCCEEEEEEccCCeE
Confidence 56788999999999998876 578999988764 2333443222 45667888 78999999887 58999
Q ss_pred EEEeccCCCCceeEEeeeecccC--------CCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCce-e--eeee
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQG--------HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQ-M--VNPI 1174 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~--------h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~-~--v~~l 1174 (1348)
.++++... +............+ ...... .+.++|+++++++.. ....|.+|++..... . ...+
T Consensus 112 ~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H----~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 112 SVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPH----QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp EEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEE----EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred EEEEccCC-cccceeeeecccCCCCCcccccccccce----eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 99999763 33222211111111 111222 378999999999985 345799999876541 1 2334
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEE-eCCCeEEEEECCCCCe---eeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDM---LVCSTRPHT---QQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsG-s~DG~VrvwDlr~~~~---~v~~~~~~~---~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
....+..-..+ .++++++++++. -.++.|.+|++..... ......... ........|+++|+ |++|+++.
T Consensus 187 ~~~~G~GPRh~-~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd--g~~lyvsn 263 (345)
T PF10282_consen 187 KVPPGSGPRHL-AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD--GRFLYVSN 263 (345)
T ss_dssp ECSTTSSEEEE-EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT--SSEEEEEE
T ss_pred ccccCCCCcEE-EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC--CCEEEEEe
Confidence 44445557888 677888877554 5578899999982221 112221211 11236889999999 88777665
Q ss_pred -CCCcEEEEEcCCC-C--cceEEEecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 000697 1248 -QAGDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSL 1300 (1348)
Q Consensus 1248 -~DG~I~IWDlr~~-~--~~v~t~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~ 1300 (1348)
.++.|.+|++... + +.+..+.......+.++++|+|++|+++. .++.|.+|++
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 5577999999432 1 23344444445589999999999888776 5678999985
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.83 E-value=1.8e-07 Score=102.36 Aligned_cols=249 Identities=13% Similarity=0.157 Sum_probs=160.4
Q ss_pred CCeEEEEEcC---CCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1036 KGTKTALLQP---FSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1036 ~~I~sl~fsp---dg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
+.+..|.|.. +|. .|+-+..+|.|.++.....+....+++-....-.+. ++...+++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455566642 344 567778899999998775555444544331112222 33333378888899999999998544
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeEEEEEe
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTAS 1188 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~-~~~Ll~gg~Dg~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~ 1188 (1348)
... .. +...+..+.|..+.+. ..|+.. .+.+++||+|+.+..||++.....+.. .+.|..+ |.+|...
T Consensus 150 ~t~--~~---le~vq~wk~He~E~Wt----a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G-V~SI~ss 219 (339)
T KOG0280|consen 150 ETE--MV---LEKVQTWKVHEFEAWT----AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG-VVSIYSS 219 (339)
T ss_pred cce--ee---eeecccccccceeeee----eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc-eEEEecC
Confidence 322 22 2223567788887776 555433 357888999999999999943325544 4455555 9999788
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-c---ce
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-D---AY 1264 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~---~v 1264 (1348)
++.+.++++|+.|-.|++||.|+..+.+... .-.+.|..+..+|.-.+..++++-.+ -.+|-+..... + ..
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVL 294 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheee
Confidence 8889999999999999999999655444332 12378999999997222334444444 46777776542 2 33
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEe-CCCcEE-EEE
Q 000697 1265 LTIDAHRGSLSALAVHRHAPIIASGS-AKQLIK-VFS 1299 (1348)
Q Consensus 1265 ~t~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~-Vwd 1299 (1348)
...+.|.+-...-.|.....++||++ .|+.++ +|-
T Consensus 295 ~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred eccccccceeeccccccccceeeeeeccccceeeeee
Confidence 44556666666667754456788864 455544 664
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2e-07 Score=110.64 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=141.8
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecC--CCCCCeEEEEEe-------------------cCCCCEEEEEeCCCeEE
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPS--SSDCSISALTAS-------------------QVHGGQLAAGFVDGSVR 1205 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~--~~~~~VtsL~~~-------------------s~dg~~LvsGs~DG~Vr 1205 (1348)
..+++....||.+|+||..+++ ....+.. +..+.-++..|. +.+...++-|...|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 4567777899999999999887 5555432 111112222121 12345788899999999
Q ss_pred EEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1206 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1206 vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+|+...++ +...+ .-..|.+.|+++.++.. -..|.+++.|+.+..|+.... ..+..+......+.+++++|||..
T Consensus 84 ~ys~~~g~-it~~~-st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 84 LYSVAGGE-ITAKL-STDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEEecCCe-EEEEE-ecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCE
Confidence 99999988 54444 33478899999999887 889999999999999999987 788899988899999999999999
Q ss_pred EEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCC-----CCEEEEE-ECCCeEEEc
Q 000697 1286 IASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-----QVLLAAG-SADACVSIH 1347 (1348)
Q Consensus 1286 LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspd-----g~~Latg-s~Dg~I~IW 1347 (1348)
+++++ +.|++||+ +++.+..|.+ |. ++|++++|--. |.++.++ ..+..+.+|
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftg-h~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTG-HG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecC-CC-------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 99998 78999995 4677777877 65 89999999877 5555544 335556665
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=7.4e-08 Score=114.51 Aligned_cols=238 Identities=12% Similarity=0.178 Sum_probs=169.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCcee--------EEeeeecccCCCCcccccceEEEEecCCCeEEE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK--------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~--------lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~ 1152 (1348)
....++.| +...+++++||.||.++|-++.+...... -.+--+++.||...|.- +.|+.+...|-+
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v----vTWNe~~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV----VTWNENNQKLTT 88 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE----EEeccccccccc
Confidence 47889999 78899999999999999999865321111 11123567889888876 999988888888
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000697 1153 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1232 (1348)
Q Consensus 1153 gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl 1232 (1348)
+..+|.|.||-+-++.-+...+.....+-|.++ .|..+|..+.....||.|.+=.+..+..--+.++ ......+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-sWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-----g~~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-SWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-----GQLLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEE-EEcCCCcEEEEEEccCCEEEEeeccceecchhcc-----hheccce
Confidence 889999999999888722333445556668888 7788999999999999998887776552222221 1345578
Q ss_pred EEecCCCCCEEEEEECCCcEEEEEcCCCC------cceEE----EecCCCCeEEEEEe--------CCCCEEEEEeCCCc
Q 000697 1233 SFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLT----IDAHRGSLSALAVH--------RHAPIIASGSAKQL 1294 (1348)
Q Consensus 1233 ~~sp~~~g~~LaSgs~DG~I~IWDlr~~~------~~v~t----~~~h~~~VtsLa~s--------pdg~~LasgS~Dg~ 1294 (1348)
.|+++ .+.++.+-.+|.+.+||....- .+... +......|..+.|. |+.+.+|.+-.+|.
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 89999 8888888889999999976321 11111 11112235555553 58889999999999
Q ss_pred EEEEEcCC-ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC
Q 000697 1295 IKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1341 (1348)
Q Consensus 1295 I~Vwd~~g-~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D 1341 (1348)
+.|..... .....+.. .-.+.+..|+++|.+||.+|.|
T Consensus 241 ~QiMR~eND~~Pvv~dt---------gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---------GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhcCCCCCeEEec---------ccEeecceecCCCcEEEEccCc
Confidence 99887332 22222222 1468899999999999999875
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=2.1e-06 Score=105.41 Aligned_cols=234 Identities=11% Similarity=0.099 Sum_probs=144.6
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.|.++|.+.+. ...+..+. ..+....| ++||+.|+..+.+ ..|.+|++.+ ++.+.+ ......+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~---~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~l------~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR---EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQI------TNFEGLN 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCC---CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCC--CCEEEc------cCCCCCc
Confidence 47777877444 34444444 57888899 7899988776543 3688888865 443333 2222222
Q ss_pred cccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEEE
Q 000697 1135 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1208 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~g-g~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~VrvwD 1208 (1348)
.. ..|+|++..|+.. ..+| .|++||+.++. . ..+..+... .... .++++|+.++..+. +| .|.++|
T Consensus 246 ~~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~-~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 246 GA----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-L-SRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CC----eEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988754 3444 68889998876 3 344433322 4455 57889988776654 33 577778
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G--~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+.+++ ..+.. ..+ .......|+|+ |+.++..+.+ | .|.+||+.++ .. ..+.. ........|+|+|+.
T Consensus 318 ~~~g~-~~~lt--~~~--~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 318 VNGGR-AERVT--FVG--NYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred CCCCC-EEEee--cCC--CCccceEECCC--CCEEEEEEccCCceEEEEEECCCC-CE-EEccC-CCCCCCceECCCCCE
Confidence 77765 22221 111 23345789999 8888776643 3 4888898876 22 33322 222235689999998
Q ss_pred EEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1286 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1286 LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
++..+.+ ..+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRLPLPT-AQ-------GEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 8776543 347777888876655554 32 45666777763
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.4e-06 Score=102.01 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=174.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCC
Q 000697 1036 KGTKTALLQPFSPIVVAAD-----------ENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCN 1103 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs-----------~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~D 1103 (1348)
..|.-+.|||.+++|+|-+ +...++|||+.+|...+.|.....+ ..+. -..| +.|+++++.-..+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frW--S~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRW--SHDDKYFARMTGN 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEe--ccCCceeEEeccc
Confidence 5799999999999999864 2357999999999999988874311 1222 2345 8899999987775
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE--CC---CeEEEEECCCCceeeeeecCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EV---SSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg--~D---g~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.|.||+... ..++ ..-.-...+|+. ..|+|.+..|+-=. .+ ..+.+..+.+.+ .+++-..++
T Consensus 327 -sisIyEtps----f~ll---d~Kslki~gIr~----FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfn 393 (698)
T KOG2314|consen 327 -SISIYETPS----FMLL---DKKSLKISGIRD----FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFN 393 (698)
T ss_pred -eEEEEecCc----eeee---cccccCCccccC----cccCCCcceEEEEcccccCCcceEEEEecCccc-eeeecccee
Confidence 699998633 2222 001112344555 78888755554332 11 235556665555 444443332
Q ss_pred CCCeEEEEEecCCCCEEEEEe----------CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1179 DCSISALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1179 ~~~VtsL~~~s~dg~~LvsGs----------~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
-+ =..| .++..|++|+.-- .=..+.|+.++.....+... .. +..|...+|-|. |+.+++-+.
T Consensus 394 Vs-DckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-el---ke~vi~FaWEP~--gdkF~vi~g 465 (698)
T KOG2314|consen 394 VS-DCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-EL---KESVIAFAWEPH--GDKFAVISG 465 (698)
T ss_pred ee-ccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ec---chheeeeeeccC--CCeEEEEEc
Confidence 21 1123 5677787776421 11246677777766445444 23 378999999999 777666553
Q ss_pred C---CcEEEEEcCCC-C--cceEEEecCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEcCCceEEEEeccCCcccccc
Q 000697 1249 A---GDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1319 (1348)
Q Consensus 1249 D---G~I~IWDlr~~-~--~~v~t~~~h~~~VtsLa~spdg~~Lasg---S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~ 1319 (1348)
+ .++.+|-+.+. . ..+..+. ....+.+.|+|.|++++.+ |..|.+.++|.+-..+..... .. |
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~e-----h 537 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PE-----H 537 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cc-----c
Confidence 3 56899988732 1 3344443 3457889999999988776 456889999976422222211 11 1
Q ss_pred cCCeEEEEEeCCCCEEEEEECCC
Q 000697 1320 IGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1320 ~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
...+.+.|.|.|+|++|+++-.
T Consensus 538 -~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 -FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -cccccceECCCCCEEEEeeehh
Confidence 3467899999999999998743
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=1.6e-07 Score=117.35 Aligned_cols=191 Identities=16% Similarity=0.287 Sum_probs=142.9
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
.+...++.++.+..+-+||... + .+. ..+.............+-.+.+.-++++|+--+.|.+|+..... .-
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~--~--~~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p 168 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN--S--SVL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KP 168 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc--C--cee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Cc
Confidence 3667888888888999999854 1 111 11111111111111223345555677888888999999988444 33
Q ss_pred eeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000697 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1251 (1348)
Q Consensus 1172 ~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~ 1251 (1348)
..+.+|.+. |-++ .++.+|.++++.+.|.++|+|++.+.+.... ..-+|...|..+++.|. .+++++.|.+
T Consensus 169 ~~l~GHeG~-iF~i-~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---~~fgHsaRvw~~~~~~n----~i~t~gedct 239 (967)
T KOG0974|consen 169 IRLKGHEGS-IFSI-VTSLDGRYIASVSDDRSIRLWPIDSREVLGC---TGFGHSARVWACCFLPN----RIITVGEDCT 239 (967)
T ss_pred ceecccCCc-eEEE-EEccCCcEEEEEecCcceeeeecccccccCc---ccccccceeEEEEeccc----eeEEeccceE
Confidence 357777776 8898 6788999999999999999999998874431 22378999999999975 9999999999
Q ss_pred EEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1252 IQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.++|+... ..+..+..|. ..+..++.+++....+|++.|+.+++|+..
T Consensus 240 crvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 240 CRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99997663 4666888885 479999999999999999999999999954
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.76 E-value=1.7e-06 Score=105.66 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=131.7
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCC
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
..|.++|... ...+. +..+...+.. ..|++++..++.+..+ ..|++||+.++. .. .+.....
T Consensus 170 ~~l~~~d~~g--~~~~~------l~~~~~~~~~----p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~-~~~~~~~- 234 (417)
T TIGR02800 170 YELQVADYDG--ANPQT------ITRSREPILS----PAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-RE-KVASFPG- 234 (417)
T ss_pred ceEEEEcCCC--CCCEE------eecCCCceec----ccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EeecCCC-
Confidence 3577777643 22222 2334444444 7899999998887533 479999998876 32 2222222
Q ss_pred CeEEEEEecCCCCEEEE-EeCCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000697 1181 SISALTASQVHGGQLAA-GFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1254 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~Lvs-Gs~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG--~I~I 1254 (1348)
.+.++ .++++|+.|+. .+.+| .|++||+.++. ..... .+........|+|+ |+.|+..+. +| .|.+
T Consensus 235 ~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~----~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLT----NGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccce-EECCCCCEEEEEECCCCCccEEEEECCCCC-EEECC----CCCCCCCCEEECCC--CCEEEEEECCCCCceEEE
Confidence 25556 57889887764 44444 58888988765 22221 22244556789998 887776554 34 4777
Q ss_pred EEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1255 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1255 WDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg---~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
+|+..+ + ...+..+........|+|+|++++.++.++ .|.+||+.+.....+.. . ......+|+|+
T Consensus 307 ~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------~~~~~p~~spd 375 (417)
T TIGR02800 307 MDADGG-E-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T--------GLDESPSFAPN 375 (417)
T ss_pred EECCCC-C-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C--------CCCCCceECCC
Confidence 787755 2 344554556678889999999998887765 78888976655544443 1 12344689999
Q ss_pred CCEEEEEECCC
Q 000697 1332 QVLLAAGSADA 1342 (1348)
Q Consensus 1332 g~~Latgs~Dg 1342 (1348)
+++|+.++.++
T Consensus 376 g~~l~~~~~~~ 386 (417)
T TIGR02800 376 GRMILYATTRG 386 (417)
T ss_pred CCEEEEEEeCC
Confidence 99888877654
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=1.8e-05 Score=93.01 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=165.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----------CCeEEEEe
Q 000697 1046 FSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC----------NGNIRIWK 1110 (1348)
Q Consensus 1046 dg~~Latgs~d-----g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----------DG~IrIWd 1110 (1348)
++..+.+.+.. ++|.|.|.++++.+.++.....+ ..+ + ++|++.|+++.. +..|.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----NPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----cee-E--CCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34445544433 89999999999999999876622 233 5 789998888765 78999999
Q ss_pred ccCCCCceeEEeeeecccCC-CCcccccceEEEEecCCCeEEEEE-C-CCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1111 DYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-E-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h-~~~V~si~~~v~ws~~~~~Ll~gg-~-Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
..+.+-..++. +... ...+-...-.+.++++++++++.. . +..|-+.|+.+++ .+.++...... .-.
T Consensus 84 ~~t~~~~~~i~-----~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp~~~--~vy-- 153 (352)
T TIGR02658 84 PQTHLPIADIE-----LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVPDCY--HIF-- 153 (352)
T ss_pred CccCcEEeEEc-----cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCCCCc--EEE--
Confidence 97732222222 1110 000000011278899999999885 4 7899999999999 88888763322 111
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCee-eEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC----
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK---- 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~~-v~~~~~~~~h~~~I~-sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---- 1261 (1348)
-..+ ..+.+-+.||.....-+....+. ......+.+....+. .-.+.+. +|.++..... |.|.+.|+....
T Consensus 154 ~t~e-~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 154 PTAN-DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred EecC-CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceec
Confidence 1122 22334456776666554432211 111111100000000 0034552 2777776666 999999965431
Q ss_pred cceEEEec-------CCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEE-cCCceEEEEeccCCcccccccCCe
Q 000697 1262 DAYLTIDA-------HRGSLSALAVHRHAPIIASGS----------AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1262 ~~v~t~~~-------h~~~VtsLa~spdg~~LasgS----------~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
..+..+.. ..+.+.-+++|++++.+.... ..+.|.++| .+++.+..+.. ...+
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~ 301 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEI 301 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCce
Confidence 23333221 233445599999998776632 124799999 45677777765 1478
Q ss_pred EEEEEeCCCC-EEEEEE-CCCeEEEcC
Q 000697 1324 NCLTFHPYQV-LLAAGS-ADACVSIHS 1348 (1348)
Q Consensus 1324 tslafspdg~-~Latgs-~Dg~I~IWd 1348 (1348)
..++++||++ +|++.. .++.|.|+|
T Consensus 302 ~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 302 DSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 9999999999 777666 478888875
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=7.9e-08 Score=114.93 Aligned_cols=287 Identities=14% Similarity=0.165 Sum_probs=190.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+++.++.++|.|+-+|.++.-| +.|-|++.. ....-+..-.+ -.|-.+.|.+++...+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 46788999999999999998665 455566543 32222222221 357778886666666766666666778999865
Q ss_pred CC-CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1114 QK-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1114 ~~-~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. ...+++ +.+|...++. +.|+++...+++. +-|-.+..||+++....+..+..-+.. -+.+.+.-.+
T Consensus 101 ss~~aIef~-----lhghsraitd----~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~ 170 (1081)
T KOG0309|consen 101 SSSNAIEFV-----LHGHSRAITD----INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKD 170 (1081)
T ss_pred CCccceEEE-----EecCccceec----cccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccC
Confidence 33 233444 7889999998 8898887665554 688999999999876455555543333 5666565566
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1271 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~ 1271 (1348)
++.++ .+....|++||.|.+.......+ +|...|..+.|... ....+.+++.||+|++||..+..+.-.......
T Consensus 171 p~vla-sshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 171 PNVLA-SSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cchhh-hccCCceEEEeccCCCcceEEec---ccceeeehHHHhhh-hhhhhcccCCCCceeeecccccccccceecccc
Confidence 66665 45567899999998886776554 46789999999876 567899999999999999985432222222345
Q ss_pred CCeEEEEEeCCCCEEEEE--eCCCcEEEEEc-----------CCceEEEEeccCCcccccccCCeEEEEEeCC-------
Q 000697 1272 GSLSALAVHRHAPIIASG--SAKQLIKVFSL-----------EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY------- 1331 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~-----------~g~~l~~i~~~h~~f~~~~~~~Vtslafspd------- 1331 (1348)
.+|..-.+-|-|.-.+.- -.+..+.+++. ....+.++.+ |+ ..|...-|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~-------D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HD-------DVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cc-------hHHHHHhhhhcccccCCC
Confidence 566666777765522221 11123444331 1356778888 65 44444444222
Q ss_pred ---CCEEEEEECCCeEEEc
Q 000697 1332 ---QVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1332 ---g~~Latgs~Dg~I~IW 1347 (1348)
.-.|+|-+.|.++++|
T Consensus 318 d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CccceeEEEeecCCceEee
Confidence 1369999999999999
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.2e-07 Score=109.04 Aligned_cols=205 Identities=14% Similarity=0.228 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCc
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1117 (1348)
-..|+++...--|..++....|.-+|++.|..+..|.... +.++++.. ++-..+|++|+.+|.|..||..... .
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~---~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ks-r 209 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS---GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKS-R 209 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccccccccccccc---ccceeeee--cCccceEEecccCceEEEecchhhh-h
Confidence 3456666444434444446678888999999999998877 78999998 5677899999999999999987622 1
Q ss_pred eeEEeeeecccCCCC-----cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1118 QKLVTAFSSIQGHKP-----GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1118 ~~lvs~~~~l~~h~~-----~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
...+..-..+..|.. .|++ +.|+.+|-.+.+|..+|.|.|||+++.+ ++..-.-....+|..+.|...++
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTa----l~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTA----LKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred heeeecccccCCCccccccCcceE----EEecCCceeEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccccCC
Confidence 122211122223332 2444 8898888889999999999999999988 55544444455788886655544
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
.--+.......++|||-.+++.... +. ....+..+|+-|+ +..+++|-.++.+..|=+...
T Consensus 285 q~~v~S~Dk~~~kiWd~~~Gk~~as-iE----pt~~lND~C~~p~--sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECTGKPMAS-IE----PTSDLNDFCFVPG--SGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEecchHHhhhcccccCCceee-cc----ccCCcCceeeecC--CceEEEecCCCcceeEEcccc
Confidence 4444455667899999999985433 32 2356999999999 889999999988888877654
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3.2e-06 Score=104.14 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=141.3
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CC--eEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.|.++|.+.... +.+..+. ..+.+..| ++||+.|+..+. ++ .|.+||+.+ ++.+.+ ....+ ..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~---~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~t--g~~~~l---t~~~g---~~ 264 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP---EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYT--QVREKV---TSFPG---IN 264 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC---CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCC--CCeEEe---cCCCC---Cc
Confidence 566667654332 3344444 57888899 889998887654 33 577778755 443333 11221 12
Q ss_pred cccceEEEEecCCCeEEEE-ECCCe--EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC--eEEEEE
Q 000697 1135 RCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1208 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~g-g~Dg~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG--~VrvwD 1208 (1348)
.. ..|+|++..|+.. +.+|. |+++|+.+++ ...+..+.. ..... .++++|+.++..+. +| .|.++|
T Consensus 265 ~~----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~-~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GA----PRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA-IDTEP-SWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CC----eeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC-Cccce-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988765 55564 8888988776 344444332 24555 57789988776554 34 466677
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc--EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1209 lr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~-DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
+.+++ ..... ..+ ......+|+|+ |+.|+..+. ++. |.++|+.++ . ...+.... ......|+|+|+.
T Consensus 337 l~~g~-~~~Lt--~~g--~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~~-~d~~ps~spdG~~ 406 (448)
T PRK04792 337 LASGK-VSRLT--FEG--EQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETG-A-MQVLTSTR-LDESPSVAPNGTM 406 (448)
T ss_pred CCCCC-EEEEe--cCC--CCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCC-C-eEEccCCC-CCCCceECCCCCE
Confidence 77665 22221 111 23345789999 777766554 443 555677765 2 23333221 1224579999997
Q ss_pred EEEEeCC-C--cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC
Q 000697 1286 IASGSAK-Q--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1331 (1348)
Q Consensus 1286 LasgS~D-g--~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd 1331 (1348)
|+..+.+ + .+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 407 I~~~~~~~g~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~Wsp~ 447 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSIDGRFKARLPA-GQ-------GEVKSPAWSPF 447 (448)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 7665543 3 37777888887777765 33 45667778763
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.2e-06 Score=103.49 Aligned_cols=241 Identities=15% Similarity=0.233 Sum_probs=159.8
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-----EeCCCeEEEEeccC
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-----ASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-----gs~DG~IrIWdl~~ 1113 (1348)
++..|+.|+.+.+--. .+.+.+|+..+-+.+. -+-|. ..|+.+.+.+.+....+++ +|.-+.|+||....
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~-~kl~~---~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ-HKLSV---SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCCcccee-eeeec---cceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 4667888877443222 5579999987632221 12233 6788999854434455554 35556899999853
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEE-EE--CC---------CeEEEEECCCCceeeeeecCCCCCC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SG--EV---------SSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~-gg--~D---------g~IrVWDl~t~~~~v~~l~~~~~~~ 1181 (1348)
+......+.+.+ -.+..+.+.|++-+.-|++ ++ -| .++++.++..+. +...+. ..++
T Consensus 204 --~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~--k~GP 272 (566)
T KOG2315|consen 204 --EGQHQPVANKSF------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLL--KEGP 272 (566)
T ss_pred --ccccchhhhccc------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecC--CCCC
Confidence 111111011111 1222234889877664433 22 22 358888888655 555544 3667
Q ss_pred eEEEEEecCCCCEEEE--EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEE
Q 000697 1182 ISALTASQVHGGQLAA--GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLD 1256 (1348)
Q Consensus 1182 VtsL~~~s~dg~~Lvs--Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWD 1256 (1348)
|.++ .|++++..|++ |..--.+.|||++..- +..+ - .++=+++-|+|. |++++.++-+ |.|-|||
T Consensus 273 Vhdv-~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~---egpRN~~~fnp~--g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 273 VHDV-TWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--P---EGPRNTAFFNPH--GNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred ceEE-EECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--C---CCCccceEECCC--CCEEEEeecCCCCCceEEEe
Confidence 9999 66788876654 6677899999999764 3333 1 267788999999 9998887754 8899999
Q ss_pred cCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCCceEEEE
Q 000697 1257 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA------KQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~------Dg~I~Vwd~~g~~l~~i 1308 (1348)
+.+. +.+..+.... -+-+.|+|||.+|+|++. |+.++||+.+|..+..-
T Consensus 343 v~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 343 VPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred ccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 9985 7888887554 456899999999998864 68899999999877643
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.71 E-value=1.9e-07 Score=100.61 Aligned_cols=211 Identities=17% Similarity=0.276 Sum_probs=126.0
Q ss_pred CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEEC-----CCeEEEEECCC
Q 000697 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLEK 1166 (1348)
Q Consensus 1093 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg~IrVWDl~t 1166 (1348)
.++-+++++.||.+.+.+.+. ...+. +.+. .|.+. ++.++...+..+.+++. -+..++|+++.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~---~~i~~~~~~~-----as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK---DLALM---SRIPSIHSGS-----ASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred cCCceEecCCCceEEEEechH---HHhhh---hhcccccccc-----cccceeecccEEecCCcceEeeccceeeecccc
Confidence 457799999999999998743 10100 0011 11111 11222223444444321 13455666654
Q ss_pred CceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1167 ~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
.+ ....-...-+ .|++++..+...+++++|+.||.+.+||.|....++..+ ..|+..|..+.|+|. ++..|+++
T Consensus 169 ~~-t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l---~ahk~~i~eV~FHpk-~p~~Lft~ 242 (319)
T KOG4714|consen 169 IK-TLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL---KAHKAEIWEVHFHPK-NPEHLFTC 242 (319)
T ss_pred cc-cccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH---HHhhhhhhheeccCC-CchheeEe
Confidence 43 1111111122 388886666667888999999999999999886555544 456799999999999 89999999
Q ss_pred ECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEE
Q 000697 1247 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1247 s~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
+.||.+.-||..+. .+ .++++. ..+..| ++|..+...-. -++........|+++
T Consensus 243 sedGslw~wdas~~--~l-------------~i~~~~---------s~~s~W-LsgD~v~s~i~-i~~ll~~~~~Sinsf 296 (319)
T KOG4714|consen 243 SEDGSLWHWDASTT--FL-------------SISNQA---------SVISSW-LSGDPVKSRIE-ITSLLPSRSLSINSF 296 (319)
T ss_pred cCCCcEEEEcCCCc--eE-------------EecCcc---------cccccc-ccCCcccceEe-eeccccccceeeeee
Confidence 99999999997742 11 122221 234455 34444333111 122222333456655
Q ss_pred EEeCCCCEEEEEECCCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. .|..|++|+.-+-|++++
T Consensus 297 DV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 297 DV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ec--cCceEEeccccceEEEec
Confidence 54 577899999888888763
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.70 E-value=2.4e-07 Score=103.23 Aligned_cols=248 Identities=13% Similarity=0.198 Sum_probs=166.8
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecc-cCCCCcccccceEEEEecC
Q 000697 1068 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQ 1146 (1348)
Q Consensus 1068 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~~h~~~V~si~~~v~ws~~ 1146 (1348)
..+..++++. +.|++... .+...-+++.+.|.++|||--.+...-. ..+ .....+++. +.+..+
T Consensus 15 ~ll~~~eG~~---d~vn~~~l--~~~e~gv~~~s~drtvrv~lkrds~q~w------psI~~~mP~~~~~----~~y~~e 79 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAIL--IPKEEGVISVSEDRTVRVWLKRDSGQYW------PSIYHYMPSPCSA----MEYVSE 79 (404)
T ss_pred hhhhhhcCch---hhhhhhee--ccCCCCeEEccccceeeeEEeccccccC------chhhhhCCCCceE----eeeecc
Confidence 3455677777 67777776 3566779999999999999865522211 112 122334444 788888
Q ss_pred CCeEEEEECCCeEEEEECC----CCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC
Q 000697 1147 SGYLYASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~----t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
...|++|-++|++.-+.+. +.. ..+....|... |..+ .++.....+++.+.|..+.---.+.+..+-... +
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~-~~r~~~~h~~~-v~~~-if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~ 154 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMT-FLKDYLAHQAR-VSAI-VFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--F 154 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcc-hhhhhhhhhcc-eeeE-EecCCceeEEEeccccceEEEeeccCCcccceE--e
Confidence 8899999999999888543 344 45555566554 8888 666777888888888877544444443211100 0
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC-CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~-~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
...-+++.+. -.+...|...|.|..-.+... -.++.++.+|.+.++++.|.+...++.+|..|..|.+||+-
T Consensus 155 ---~~~~t~~~~d----~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 155 ---ETPASALQFD----ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ---eccCCCCcee----eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 0111111111 114455666666655544321 26888999999999999999999999999999999999976
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|..-..... .+|...|..+..-+.-+.|.+++.||.|-+|+
T Consensus 228 g~~g~~~el------~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 228 GRKGTAYEL------QGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred CCcceeeee------ccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 654333222 12447888888888889999999999999996
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=4.1e-05 Score=87.08 Aligned_cols=271 Identities=13% Similarity=0.216 Sum_probs=171.7
Q ss_pred CCcEEEEECCCCc-EEEEe--eCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEeccCCCCceeEEeeeecccC
Q 000697 1056 NERIKIWNYEEDT-LLNSF--DNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQG 1129 (1348)
Q Consensus 1056 dg~I~VWd~~t~~-~l~~~--~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~ 1129 (1348)
++.|.+|++++.. .+... -... ..++-|+| +++++.|+++.. +|.|-.|.+....|...++... .+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc---CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCC
Confidence 5679999887421 11111 1122 46788999 789999998865 4789999887655666665221 1222
Q ss_pred CCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeee--ecCCCC--------CC-eEEEEEecCCCCEEEE
Q 000697 1130 HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNP--IPSSSD--------CS-ISALTASQVHGGQLAA 1197 (1348)
Q Consensus 1130 h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~--l~~~~~--------~~-VtsL~~~s~dg~~Lvs 1197 (1348)
+.. . -++.++++.+++++. ..|.|.++-++..-..... ...|.+ .+ +.+. -+.|+++++++
T Consensus 89 ~~p--~----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a-~~tP~~~~l~v 161 (346)
T COG2706 89 SPP--C----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSA-NFTPDGRYLVV 161 (346)
T ss_pred CCC--e----EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcccee-eeCCCCCEEEE
Confidence 221 2 378889999999996 5689999988653201111 111111 11 3344 57789988887
Q ss_pred EeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCcceEEEecC-----
Q 000697 1198 GFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH----- 1270 (1348)
Q Consensus 1198 Gs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h----- 1270 (1348)
... --.|.+|++..+. ........-.....-+.|.|+|+ +++..+.+ -+++|.+|........+..++.+
T Consensus 162 ~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 162 PDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred eecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 653 3479999998655 22111111123467889999999 88776655 58999999998743333443322
Q ss_pred ----CCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC--CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECC-C
Q 000697 1271 ----RGSLSALAVHRHAPIIASGSA-KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-A 1342 (1348)
Q Consensus 1271 ----~~~VtsLa~spdg~~LasgS~-Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~D-g 1342 (1348)
......+.++++|++|.++.. ...|.+|.++ +..+..+.. .. .+...-..+.|++++++|++++.| .
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCcCCccceeCCCCCEEEEEccCCC
Confidence 346778999999999988743 2367788743 444544433 22 112336789999999999999874 4
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
.|.+|
T Consensus 314 ~i~vf 318 (346)
T COG2706 314 NITVF 318 (346)
T ss_pred cEEEE
Confidence 56665
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.67 E-value=1.5e-05 Score=95.97 Aligned_cols=264 Identities=16% Similarity=0.124 Sum_probs=158.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
++..+++++.+|.+..+|.++|+.+....... .+.+.-. -.++.++.++.+|.|..||..+ ++.... ..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~---v~~~~v~v~~~~g~l~a~d~~t--G~~~W~--~~ 172 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPL---VANGLVVVRTNDGRLTALDAAT--GERLWT--YS 172 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCE---EECCEEEEECCCCeEEEEEcCC--CceeeE--Ec
Confidence 46788888899999999999999887765433 2222111 1345778888899999999876 332211 00
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CCe---EEEE-EecCCCCEEEEE
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CSI---SALT-ASQVHGGQLAAG 1198 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~---~~V---tsL~-~~s~dg~~LvsG 1198 (1348)
............ .... .++.++++..+|.+..+|.++++ .+-....... ..+ ..+. .....++.++++
T Consensus 173 -~~~~~~~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 173 -RVTPALTLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred -cCCCceeecCCC-CCEE--ECCEEEEECCCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 111000000000 0111 13578888888999999999887 5543321100 000 0000 000135678888
Q ss_pred eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCCeEEE
Q 000697 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSAL 1277 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~VtsL 1277 (1348)
+.+|.++.||.++++. ..... . ........ . +..++.++.+|.+..+|..++ +.+...... .....+.
T Consensus 248 ~~~g~l~a~d~~tG~~-~W~~~-~----~~~~~p~~--~--~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 248 SYQGRVAALDLRSGRV-LWKRD-A----SSYQGPAV--D--DNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAP 316 (377)
T ss_pred EcCCEEEEEECCCCcE-EEeec-c----CCccCceE--e--CCEEEEECCCCeEEEEECCCC-cEEEccccccCCccccC
Confidence 8999999999998873 32221 1 11122222 2 567888889999999999887 454433221 1122222
Q ss_pred EEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1278 AVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1278 a~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.. .+..+++++.+|.|.++| .+|+.+..++. +.+ ....+..+.. ..|+.++.||.|..|
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~~~------~~~~sp~~~~--~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-DGS------GIASPPVVVG--DGLLVQTRDGDLYAF 376 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCC------ccccCCEEEC--CEEEEEeCCceEEEe
Confidence 23 356888899999999999 46888888876 331 1122223333 347788899999865
No 268
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.2e-06 Score=105.28 Aligned_cols=260 Identities=19% Similarity=0.292 Sum_probs=196.0
Q ss_pred HhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhch---hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhc
Q 000697 441 EQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ---CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510 (1348)
Q Consensus 441 ~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~---~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL 510 (1348)
+|+++.+.+-++-+..++|| |.+|...+.|... .-++.|--.|.+.-.-+.-.....+..|..|.|++||
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 57777777766666666677 7888888877532 2233444333333322233334446789999999999
Q ss_pred cCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCC-cchhHHHHhhchH
Q 000697 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH-RRGQEACIEAGLI 589 (1348)
Q Consensus 511 ~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~-~~gq~~~~~~~~~ 589 (1348)
+++..+++--+++-++.|...-+.|..-+++.+...-.+..|+.......+|. ++-+|+.||++- |.....-+ ..++
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~v-~~iL 239 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDVV-APIL 239 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHHH-HHHH
Confidence 99999999999999999999999999999999999999999987664334444 455788999886 66665543 4457
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcC
Q 000697 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1348)
Q Consensus 590 ~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1348)
..+..+|. ..+++|.+=+|-+|+.|-++.++.-.+.++.++..+|..+|...++-|+..++-++|.++..
T Consensus 240 p~L~~ll~-------~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--- 309 (514)
T KOG0166|consen 240 PALLRLLH-------STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--- 309 (514)
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---
Confidence 78888888 77999999999999999999889888899999999999999999999999999999997721
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHhhhcc-CCChhhHHHHHHHHHHHHHhc
Q 000697 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS-DGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~-D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
.+..-+.-+.......|..+.. -...-.|+|+.+.+|-+...-
T Consensus 310 -----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 310 -----------SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred -----------cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 1112122344445555666555 555669999999999877643
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=6.5e-06 Score=100.70 Aligned_cols=242 Identities=12% Similarity=0.050 Sum_probs=139.0
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCE---EEEEeCCCe--EEEEeccCCCCceeEEeeeecccCCC
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL---LLVASCNGN--IRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~---L~tgs~DG~--IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
..|.+.|.+.+.. +.+.... ..+.+-.| +|||+. +++...+|. |.+.++.. ++.+.+ ....
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~l------t~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKKI------LALQ 230 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCC--CCceEe------ecCC
Confidence 4566677764433 3343333 45566788 789874 335555554 55556544 444443 1122
Q ss_pred CcccccceEEEEecCCCeEEEEEC-CC----eEEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEe-CCCeE
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGE-VS----SIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSV 1204 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~-Dg----~IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-~DG~V 1204 (1348)
+.... ..|+|||..|+..++ +| .+..||+..+. .....+........... .++++|+.|+..+ .+|..
T Consensus 231 g~~~~----p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 231 GNQLM----PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred CCccc----eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECCCCCc
Confidence 22222 789999998887653 22 34457766421 01222222221223455 6789999877665 46755
Q ss_pred EEE--ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1205 RLY--DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1205 rvw--Dlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
.+| ++.........+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.++ +. ..+......+....|
T Consensus 306 ~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe---ccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEE
Confidence 555 443211112222 122356678899999 8887766543 36999999876 33 334333445678999
Q ss_pred eCCCCEEEEEeC---CCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCC
Q 000697 1280 HRHAPIIASGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1280 spdg~~LasgS~---Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg 1332 (1348)
+|+|+.|+..+. ...|.++|+++.....+.. .. +.+...+|+|..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~-------g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS-------GEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC-------CcccCceecCCC
Confidence 999997765432 3568888887766555543 22 445667787753
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=9.7e-05 Score=84.08 Aligned_cols=251 Identities=11% Similarity=0.183 Sum_probs=164.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADE---NERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~---dg~I~VWd~~t--~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIW 1109 (1348)
..++-|+|+|++++|.++.. +|.|..|.++. |+. ..+......+.+-+.+++ ++++++|+++.. .|.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEE--CCCCCEEEEEEccCceEEEE
Confidence 66889999999999988754 57888888875 433 222222222244578888 789999998864 5889999
Q ss_pred eccCCCCceeEEeeeecccCCCCc----------ccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee--eecC
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPG----------VRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN--PIPS 1176 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~----------V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~--~l~~ 1176 (1348)
.+... |...... + ...|.+. +.. ..+.|++.++++.. .--.|.+|++..+. ... ....
T Consensus 117 p~~~d-G~l~~~v--~-~~~h~g~~p~~rQ~~~h~H~----a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v 187 (346)
T COG2706 117 PLQAD-GSLQPVV--Q-VVKHTGSGPHERQESPHVHS----ANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEV 187 (346)
T ss_pred EcccC-Cccccce--e-eeecCCCCCCccccCCccce----eeeCCCCCEEEEeecCCceEEEEEcccCc-ccccccccc
Confidence 98663 3322221 1 1122222 333 67889999999885 33459999998665 221 1111
Q ss_pred CCCCCeEEEEEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCC---C---CCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1177 SSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPH---T---QQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~---~---~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
..+..-..| .++|++++....++ +++|-+|........+..++.+ . ....+...|+++++ |++|.++...
T Consensus 188 ~~G~GPRHi-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d--GrFLYasNRg 264 (346)
T COG2706 188 KPGAGPRHI-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD--GRFLYASNRG 264 (346)
T ss_pred CCCCCcceE-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC--CCEEEEecCC
Confidence 233346788 77889998776654 8999999998742223322221 1 12457789999999 9999887642
Q ss_pred -CcEEEEEcCCCCcceE---EEecCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcC
Q 000697 1250 -GDIQFLDIRNHKDAYL---TIDAHRGSLSALAVHRHAPIIASGSAK-QLIKVFSLE 1301 (1348)
Q Consensus 1250 -G~I~IWDlr~~~~~v~---t~~~h~~~VtsLa~spdg~~LasgS~D-g~I~Vwd~~ 1301 (1348)
..|.+|.+...+..+. ....+...-+.+.++++|++|+++..+ ..|.+|..+
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4688888875432232 223344457899999999988888765 468898854
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=4.2e-06 Score=90.72 Aligned_cols=263 Identities=8% Similarity=0.001 Sum_probs=163.0
Q ss_pred CCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCC
Q 000697 1055 ENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1132 (1348)
....+-+|+..+.. .+..+++-. .+-..|+ ....+|+.||..|...+|...+.++-..+. ..|..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y~g~~-----F~p~s~~--~kc~~la~gG~~g~fd~~~~~tn~~h~~~c------d~snn 116 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFYTGMT-----FTPGSFI--NKCVTLADGGASGQFDLFACNTNDGHLYQC------DVSNN 116 (344)
T ss_pred ceeeeEeccccCCchhhEEeeeccc-----ccchHhh--ccccEEEeccccceeeeecccCcccceeee------ccccc
Confidence 34457777765442 233333222 1122232 245689999999999999997644433322 22222
Q ss_pred cccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1133 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1133 ~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
.|.- .-.+.-....+..++.|.++++.+++.+. ......... -.+.++ ..+++++++++.+....|-.|.+...
T Consensus 117 ~v~~---~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~~h~~~-~~~ns~-~~snd~~~~~~Vgds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 117 DVTL---VKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFAVHNQN-LTQNSL-HYSNDPSWGSSVGDSRRVFRYAIDDE 190 (344)
T ss_pred chhh---hhhhcccccceeeccCCcceeEEEEecCc-ccceeeccc-cceeee-EEcCCCceEEEecCCCcceEEEeCCc
Confidence 2211 01111124467778889999998887655 222222211 125666 67889999999999999999998754
Q ss_pred C-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEE----ecCCCCeEEEEEeCCCC--E
Q 000697 1213 D-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI----DAHRGSLSALAVHRHAP--I 1285 (1348)
Q Consensus 1213 ~-~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~----~~h~~~VtsLa~spdg~--~ 1285 (1348)
. ...++... .....=.+..|+.. ...+|+++.||++.|||+|..+.+..+. ..|.+.++.+.|++.|. +
T Consensus 191 sey~~~~~~a--~t~D~gF~~S~s~~--~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 191 SEYIENIYEA--PTSDHGFYNSFSEN--DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred cceeeeeEec--ccCCCceeeeeccC--cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE
Confidence 3 23332212 22344567788887 8899999999999999999875444333 35889999999999776 4
Q ss_pred EEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1286 IASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1286 LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
|...-.-+.+.|-|+ ++...+.+....+.+.......|....|+.++....+.+.
T Consensus 267 Lf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 267 LFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 444444578899994 4555555544122233333455888888887766555544
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.64 E-value=4.5e-05 Score=100.77 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=187.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEE----ECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIW----NYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VW----d~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
....|.++.+-++...|+.+..+|.|.+. +..+. +.+..+ + .+|.+++| +||+++|+..+.+|++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d---~GI~a~~W--SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---D---SGILAASW--SPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---c---CcEEEEEE--CCCcCEEEEEeCCCEEE
Confidence 34789999999999999999999999999 44433 223322 2 68999999 89999999999999888
Q ss_pred EEeccC-----------CCCceeEEe--------eeecccCC---------C------Cc--ccccceEEEEecCCCeEE
Q 000697 1108 IWKDYD-----------QKDKQKLVT--------AFSSIQGH---------K------PG--VRCSNVVVDWQQQSGYLY 1151 (1348)
Q Consensus 1108 IWdl~~-----------~~~~~~lvs--------~~~~l~~h---------~------~~--V~si~~~v~ws~~~~~Ll 1151 (1348)
+..-.- ..+..+.++ .|+.-.+. . +. .......++|-.||.+++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 754210 011111110 11000000 0 00 111234589999999999
Q ss_pred EEEC---C---CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC---CCeEEEEECCCCCeeeEeecCC
Q 000697 1152 ASGE---V---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1152 ~gg~---D---g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~---DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
+++- . +.||||+.+ +. +........+--.++ .|.|.|+++++.-. ...|.+|..+.-+.-...++ .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l-~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~ 300 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGAL-SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-F 300 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCc-cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-C
Confidence 9853 2 579999976 33 333332323323456 67899999988764 35688887664432222221 1
Q ss_pred CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecC-CCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1223 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH-RGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h-~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
......|..+.|+++ +..|+....|. |.+|-..+.. -..+.+... ...+..+.|||... .|..++.+|.+..++
T Consensus 301 ~~~~~~v~~l~Wn~d--s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 301 DPEEEKVIELAWNSD--SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceeeEEEECCC--CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 233468999999999 99999987665 9999988652 122233322 23455699999655 566666667776654
Q ss_pred cC-----C--------ceEEEEeccCCc----c------------cccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1300 LE-----G--------EQLGTIRYHHPS----F------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1300 ~~-----g--------~~l~~i~~~h~~----f------------~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.. + ..+..+.+ ..- | .-.-..+|.+++|++++..+|+-..||.|.+|.
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 21 1 11222222 110 0 012346899999999998899999999998873
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=1.1e-05 Score=94.44 Aligned_cols=275 Identities=13% Similarity=0.147 Sum_probs=173.4
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------------CcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---------------ERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLV 1099 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---------------g~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~t 1099 (1348)
..|..+.|+|.+++|.+-+.. ..+.|||..+|..+..|.....+. ... -+.| +.++.+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~--s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKF--SIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeee--eecchhhhh
Confidence 568899999999999986533 359999999999999998766321 133 5677 567766654
Q ss_pred EeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC--eEEE-----EECCCeEEEEECCCCceeee
Q 000697 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYA-----SGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1100 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~--~Ll~-----gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
-. ...+.|+++.. ... ...++.+. ...+.. ..|+|.++ .|+. .+..+.+++|.+.... .+.
T Consensus 149 vv-~~sl~i~e~t~---n~~-~~p~~~lr--~~gi~d----FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~ 216 (561)
T COG5354 149 VV-GSSLYIHEITD---NIE-EHPFKNLR--PVGILD----FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLV 216 (561)
T ss_pred hc-cCeEEEEecCC---ccc-cCchhhcc--ccceee----EEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eee
Confidence 42 23699999722 111 11112222 122333 56666532 2222 2567889999988766 443
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEE-----------eCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAG-----------FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsG-----------s~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
+-.--.-+ =..+ -++..|++++.- .....+.+++++.....+.. +-.++|...+|.|. ++
T Consensus 217 tk~lfk~~-~~qL-kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~--S~ 287 (561)
T COG5354 217 TKNLFKVS-GVQL-KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----DLKDPVHDFTWEPL--SS 287 (561)
T ss_pred eeeeEeec-ccEE-EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----cccccceeeeeccc--CC
Confidence 32211111 1233 344555544421 12356888888855422221 23589999999999 55
Q ss_pred EEE--EEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCceEE--EEeccCCc
Q 000697 1242 KIV--SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLG--TIRYHHPS 1314 (1348)
Q Consensus 1242 ~La--Sgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd~~g~~l~--~i~~~h~~ 1314 (1348)
.++ +|-.+..+.++|++.. ....+ ....=+.+.|+|++++++.++-| |.|-+||..|+.+. .+.+
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---- 359 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---- 359 (561)
T ss_pred ceeEEecccccceeecccccc--eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec----
Confidence 544 4457888999999954 33333 34455678899999998887655 67999997665443 3444
Q ss_pred ccccccCCeEEEEEeCCCCEEEEEEC------CCeEEEcC
Q 000697 1315 FMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1348 (1348)
Q Consensus 1315 f~~~~~~~Vtslafspdg~~Latgs~------Dg~I~IWd 1348 (1348)
...+-+.|+|++.++.+... |..|+||+
T Consensus 360 ------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 360 ------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ------CCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 34566789999998877643 78899985
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.59 E-value=8.6e-06 Score=95.21 Aligned_cols=274 Identities=13% Similarity=0.142 Sum_probs=173.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-----------
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG----------- 1104 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG----------- 1104 (1348)
-++..++|||.|.+|++.. ...|.+|+...+..+..+... .|..+.| ++.+.+|.|=+..+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~-----~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP-----DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cchhheeecCcchheehhh-ccceEEccccchhheeeeecC-----Cceeccc--CcccceeeeeccCCccChhhccCCc
Confidence 4678899999999999877 456999998887777766654 4888999 88999999876544
Q ss_pred ----eEEEEeccCCCCceeEEeeeecccCCCCc--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC
Q 000697 1105 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178 (1348)
Q Consensus 1105 ----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~--V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~ 1178 (1348)
.+.|||... + .++.+ +.....+ .+. .+.|+-++.+.+-- ....++|+++ +.......+..-.
T Consensus 105 ~~~n~~~vwd~~s--g--~iv~s---f~~~~q~~~~Wp---~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 105 TSKNNVFVWDIAS--G--MIVFS---FNGISQPYLGWP---VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred cccCceeEEeccC--c--eeEee---ccccCCcccccc---eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence 389999865 2 33422 2222222 221 37888777665444 3346899997 3330122222222
Q ss_pred CCCeEEEEEecCC--CCEEEE-----EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----
Q 000697 1179 DCSISALTASQVH--GGQLAA-----GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS---- 1247 (1348)
Q Consensus 1179 ~~~VtsL~~~s~d--g~~Lvs-----Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs---- 1247 (1348)
...|... .++|. +..|+. +..++.+++|.+-.+..+ ....-+. ..=..+.|++. |+++++--
T Consensus 173 ~~gi~dF-sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk---~~~~qLkW~~~--g~~ll~l~~t~~ 245 (561)
T COG5354 173 PVGILDF-SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFK---VSGVQLKWQVL--GKYLLVLVMTHT 245 (561)
T ss_pred ccceeeE-EecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEe---ecccEEEEecC--CceEEEEEEEee
Confidence 2236666 33443 333432 467889999999865532 2211111 23346788887 77665321
Q ss_pred -------CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCCceEEEEeccCCccccc
Q 000697 1248 -------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG--SAKQLIKVFSLEGEQLGTIRYHHPSFMAQ 1318 (1348)
Q Consensus 1248 -------~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~ 1318 (1348)
....+.+++++.. .+.......++|...+|.|++..+++. -.+..+.++|+.|+....+..
T Consensus 246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe-------- 315 (561)
T COG5354 246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE-------- 315 (561)
T ss_pred ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--------
Confidence 1245788888844 333333567899999999998866554 578889999999986554433
Q ss_pred ccCCeEEEEEeCCCCEEEEEECC---CeEEEcC
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSAD---ACVSIHS 1348 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~D---g~I~IWd 1348 (1348)
..=+.+.|+|++++++.++-| |.|-+||
T Consensus 316 --~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 316 --QKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred --cccccccccCcccEEEEecCCccccceEEec
Confidence 334556778888777776654 4566654
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.59 E-value=1.9e-05 Score=95.24 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=158.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
.+..+++++.+|.|..+|..+|+.+..+.... ........ +++.+++++.+|.+..+|..+ ++.... .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~---~ 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE---RLSGGVGA----DGGLVFVGTEKGEVIALDAED--GKELWR---A 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC---CcccceEE----cCCEEEEEcCCCEEEEEECCC--CcEeee---e
Confidence 36788889889999999999999988776555 21223333 567888999999999999866 443221 1
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC----eEEEEEecCCCCEEEEEeCC
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS----ISALTASQVHGGQLAAGFVD 1201 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~----VtsL~~~s~dg~~LvsGs~D 1201 (1348)
.. ...+.+... . .++.+++++.+|.|..||.++++ .+-.+....... ..+... .+..++.+..+
T Consensus 132 ~~---~~~~~~~p~---v--~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~ 199 (377)
T TIGR03300 132 KL---SSEVLSPPL---V--ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAG 199 (377)
T ss_pred cc---CceeecCCE---E--ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEE---ECCEEEEECCC
Confidence 11 112222111 1 35688888889999999999988 665554322110 011111 13477888899
Q ss_pred CeEEEEECCCCCeeeEeecCCC--CCC--CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEE
Q 000697 1202 GSVRLYDVRTPDMLVCSTRPHT--QQV--ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1277 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~~~~~~~--~h~--~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsL 1277 (1348)
|.+..+|.++++..- ...... +.. ..+..+.-+|...+..+++++.+|.+..||..++ +.+..... ......
T Consensus 200 g~v~ald~~tG~~~W-~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~--~~~~~p 275 (377)
T TIGR03300 200 GKLVALDLQTGQPLW-EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDA--SSYQGP 275 (377)
T ss_pred CEEEEEEccCCCEee-eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeecc--CCccCc
Confidence 999999999887322 111100 000 0011111111001457888888999999999987 45444431 112222
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEc-CCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1278 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1278 a~spdg~~LasgS~Dg~I~Vwd~-~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.+ .+..++.++.||.+..+|. +|+.+..... .. . ....+... .+..|++++.||.|.++|
T Consensus 276 ~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~---~---~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 276 AV--DDNRLYVTDADGVVVALDRRSGSELWKNDE-LK---Y---RQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eE--eCCEEEEECCCCeEEEEECCCCcEEEcccc-cc---C---CccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 22 4567777888999999995 6766654421 11 0 11222222 356788888899888774
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=2.6e-07 Score=110.65 Aligned_cols=246 Identities=13% Similarity=0.217 Sum_probs=159.5
Q ss_pred eEEEEEcCCC--CEEEEEECCCcEEEEECCC---CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1038 TKTALLQPFS--PIVVAADENERIKIWNYEE---DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1038 I~sl~fspdg--~~Latgs~dg~I~VWd~~t---~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
|-.+.|++.. ++-++......-.||++.. ...-..+.+|. ..|+.+.|. .+....+++++.|-.|..||+.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---raitd~n~~-~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---RAITDINFN-PQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---cceeccccC-CCCCcceeeccccccceeeecc
Confidence 3344454432 2333333344556787653 22333456777 899999994 4677899999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
......-. ...-..... .+.|+-.++.+++.+..+.|++||.+.+..++..+++|... |.++.+.....
T Consensus 146 Sp~~p~ys------~~~w~s~as----qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 146 SPHRPFYS------TSSWRSAAS----QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS-VNSIDFNRFKY 214 (1081)
T ss_pred CCCcceee------eecccccCc----eeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee-eehHHHhhhhh
Confidence 62211111 111111222 38999999999999999999999999887578888886555 77776555556
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE---------ECCCcEEEEEcCCCCcc
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA---------SQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg---------s~DG~I~IWDlr~~~~~ 1263 (1348)
..+.+.+.||+|+.||.......-....+ ...+|..-++.|-+.|.++.-- ..+..-..|+..+...+
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 78899999999999998855422111111 1245555555565222222211 11223344555555578
Q ss_pred eEEEecCCCCeEEEEEeCCC--------C--EEEEEeCCCcEEEEEcC
Q 000697 1264 YLTIDAHRGSLSALAVHRHA--------P--IIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1264 v~t~~~h~~~VtsLa~spdg--------~--~LasgS~Dg~I~Vwd~~ 1301 (1348)
+++|.+|.+.|..+-|-..+ + .|++-|.|.++++|-+.
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 99999999888766664322 2 69999999999999864
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.56 E-value=3e-05 Score=102.43 Aligned_cols=288 Identities=14% Similarity=0.188 Sum_probs=174.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC---------------C--------CcEEEEeeCCCCC------------
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYE---------------E--------DTLLNSFDNHDFP------------ 1079 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~---------------t--------~~~l~~~~~h~~~------------ 1079 (1348)
+.+|.+++||||+..|+..+.+|++.+-+-+ . |++-..|+|...+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4789999999999999999989998876421 0 1122223221100
Q ss_pred ---------CCCeEEEEEEeeCCCCEEEEEeC---C---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEe
Q 000697 1080 ---------DKGISKLCLVNELDVSLLLVASC---N---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1144 (1348)
Q Consensus 1080 ---------~~~ItsL~f~ns~d~~~L~tgs~---D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws 1144 (1348)
...-..|+| ..||.++++.+- . ..||||+-+ | .+. ....++.++.-.++|.
T Consensus 200 ~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re---G--~L~-------stSE~v~gLe~~l~Wr 265 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE---G--ELQ-------STSEPVDGLEGALSWR 265 (928)
T ss_pred ccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC---c--eEE-------eccccCCCccCCccCC
Confidence 113345566 899999999875 3 467888742 3 222 1122333333358999
Q ss_pred cCCCeEEEEE---CCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec
Q 000697 1145 QQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220 (1348)
Q Consensus 1145 ~~~~~Ll~gg---~Dg~IrVWDl~t~~~~v~~l~~-~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~ 1220 (1348)
|.|..|++.. +...|.+|..+.-+--...++. ..+..|..| .|+.++..|+....|. |.+|-..+-.-..+.--
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI 343 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE-EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE
Confidence 9998888874 3456777875543201122222 334458999 7788999999988665 99998876541111110
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC----CCC-------cceEEEec--------------------
Q 000697 1221 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR----NHK-------DAYLTIDA-------------------- 1269 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr----~~~-------~~v~t~~~-------------------- 1269 (1348)
.+ .....+..+.|+|. ....|...+.+|.+..++.. .+. ..+..+.+
T Consensus 344 ~~-~~~~~~~~~~Wdpe-~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 344 RF-SSSESVNFVKWDPE-KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred Ec-cCCCCCCceEECCC-CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 11 11234556999997 67778888877777665542 110 11222221
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEE---------EEeccC---CcccccccCCeEEEEEeCCCCE
Q 000697 1270 ---HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG---------TIRYHH---PSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1270 ---h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~---------~i~~~h---~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
-...|.+++|++++..+|+-..||.|.+|....+... .+.. . ..........+..++|..+..+
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL-DSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc-ccccccccccccccEEEEEEeCCCEE
Confidence 1457899999999988999999999999984322111 1111 0 0000112356788888888877
Q ss_pred EEEEECC
Q 000697 1335 LAAGSAD 1341 (1348)
Q Consensus 1335 Latgs~D 1341 (1348)
++....+
T Consensus 501 ~~~~~~~ 507 (928)
T PF04762_consen 501 LVLSDSD 507 (928)
T ss_pred EEEEecC
Confidence 6666554
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.56 E-value=3.1e-05 Score=104.12 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=156.2
Q ss_pred EEEEEEeeC-CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec--ccCCCCc-----ccccceEEEEecCCCeEEEEE-
Q 000697 1084 SKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS--IQGHKPG-----VRCSNVVVDWQQQSGYLYASG- 1154 (1348)
Q Consensus 1084 tsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~--l~~h~~~-----V~si~~~v~ws~~~~~Ll~gg- 1154 (1348)
..+++ +. ++.++++-+.++.|++||... ..... +.. ..+.... ......-++++++++.|+++.
T Consensus 571 ~gvav--d~~~g~lyVaDs~n~rI~v~d~~G---~~i~~--ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 571 GKLAI--DLLNNRLFISDSNHNRIVVTDLDG---NFIVQ--IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred ceEEE--ECCCCeEEEEECCCCeEEEEeCCC---CEEEE--EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 35666 44 456777777888999999743 22111 010 0000000 000012378888888887775
Q ss_pred CCCeEEEEECCCCceeeeeecCCC----------------CCCeEEEEEecC-CCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000697 1155 EVSSIMLWDLEKEQQMVNPIPSSS----------------DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVC 1217 (1348)
Q Consensus 1155 ~Dg~IrVWDl~t~~~~v~~l~~~~----------------~~~VtsL~~~s~-dg~~LvsGs~DG~VrvwDlr~~~~~v~ 1217 (1348)
..+.|+++|..++. +.++.+.. -..-..+ .+++ ++.++++.+.++.|++||..++.. .
T Consensus 644 ~n~~Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad~~~~~I~v~d~~~g~v--~ 718 (1057)
T PLN02919 644 ENHALREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAMAGQHQIWEYNISDGVT--R 718 (1057)
T ss_pred CCceEEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEECCCCeEEEEECCCCeE--E
Confidence 56789999988765 44442210 0012466 4455 677888888899999999987652 1
Q ss_pred eecCC------CC------CCCCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCCCCcceEE------------EecC--
Q 000697 1218 STRPH------TQ------QVERVVGISFQPGLDPA-KIVSASQAGDIQFLDIRNHKDAYLT------------IDAH-- 1270 (1348)
Q Consensus 1218 ~~~~~------~~------h~~~I~sl~~sp~~~g~-~LaSgs~DG~I~IWDlr~~~~~v~t------------~~~h-- 1270 (1348)
.+... .+ .-.....++++|+ +. .+++-+.++.|++||+.++...+.. +-.+
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 11110 01 1134567999998 66 5566667799999999865321110 0000
Q ss_pred ------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCC--ccc-----ccccCCeEEEEEeCCCCEEEE
Q 000697 1271 ------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP--SFM-----AQKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1271 ------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~--~f~-----~~~~~~Vtslafspdg~~Lat 1337 (1348)
-....+++++++|.++++-+.+++|++||.++..+..+.+ .. ++. ........+++++++|+++++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 1124688999999999999999999999987766666544 21 111 112346789999999998888
Q ss_pred EECCCeEEEcC
Q 000697 1338 GSADACVSIHS 1348 (1348)
Q Consensus 1338 gs~Dg~I~IWd 1348 (1348)
.+.+++|++||
T Consensus 876 Dt~Nn~Irvid 886 (1057)
T PLN02919 876 DTNNSLIRYLD 886 (1057)
T ss_pred ECCCCEEEEEE
Confidence 88899999986
No 279
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=1.3e-05 Score=98.52 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCC--eEEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~d---g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~DG--~IrIW 1109 (1348)
..+....|+|||+.|+..+.+ ..|.+||+++++... +.... +.+....| ++||+.|+ +.+.+| .|.+|
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEE--CCCCCEEEEEEccCCCceEEEE
Confidence 457888999999988876533 368899998876543 22222 33456788 78998877 445555 47777
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ +..+. +..+...... ..|++++..++..++ + ..|+++|+.+++ .. .+...... ....
T Consensus 273 d~~~--~~~~~------lt~~~~~~~~----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~-~lt~~~~~-~~~~- 336 (430)
T PRK00178 273 DLAS--RQLSR------VTNHPAIDTE----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AE-RVTFVGNY-NARP- 336 (430)
T ss_pred ECCC--CCeEE------cccCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCC-ccce-
Confidence 7755 33322 2333333333 789999998877653 3 358888887776 32 22211111 2233
Q ss_pred EecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G--~I~IWDlr~~ 1260 (1348)
.++++|+.++....+ | .|.+||+.+++ . +.+ ... .......|+|+ |+.++..+.+ | .+.++++..
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~-~~l-t~~---~~~~~p~~spd--g~~i~~~~~~~g~~~l~~~~~~g- 407 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGS-V-RIL-TDT---SLDESPSVAPN--GTMLIYATRQQGRGVLMLVSING- 407 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCC-E-EEc-cCC---CCCCCceECCC--CCEEEEEEecCCceEEEEEECCC-
Confidence 568899988876653 3 58889998876 2 222 111 12225689999 7777766543 3 366666653
Q ss_pred CcceEEEecCCCCeEEEEEeCC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHRH 1282 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~spd 1282 (1348)
.....+..+.+.+...+|+|.
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CceEECcCCCCCcCCCccCCC
Confidence 344455555666777777763
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.51 E-value=7.3e-05 Score=100.60 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=155.8
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-----------CCCeEEEEEEeeCCCCEEEEEe-CC
Q 000697 1037 GTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFP-----------DKGISKLCLVNELDVSLLLVAS-CN 1103 (1348)
Q Consensus 1037 ~I~sl~fspdg-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~-----------~~~ItsL~f~ns~d~~~L~tgs-~D 1103 (1348)
-+..+++++.+ .++++-..++.|++||.. ++.+..+.+.... -.....+++ .++++.|+++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCC
Confidence 34678898764 455555678889999986 5555444331100 123578888 56777666654 45
Q ss_pred CeEEEEeccCCCCceeEEeeee----cccCCCC---cccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeec
Q 000697 1104 GNIRIWKDYDQKDKQKLVTAFS----SIQGHKP---GVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1104 G~IrIWdl~~~~~~~~lvs~~~----~l~~h~~---~V~si~~~v~ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~ 1175 (1348)
+.|+++|..+ +....+.... ...+... ........++++++++.++++ +.++.|++||..++. . ..+.
T Consensus 646 ~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~ 721 (1057)
T PLN02919 646 HALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFS 721 (1057)
T ss_pred ceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEe
Confidence 7799998755 2222110000 0000000 000011237888877777666 577899999988765 2 2221
Q ss_pred CC---------C-----CCCeEEEEEecCCCC-EEEEEeCCCeEEEEECCCCCeeeEee---------cCCCC-------
Q 000697 1176 SS---------S-----DCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCST---------RPHTQ------- 1224 (1348)
Q Consensus 1176 ~~---------~-----~~~VtsL~~~s~dg~-~LvsGs~DG~VrvwDlr~~~~~v~~~---------~~~~~------- 1224 (1348)
+. . -.....| .++++++ ++++.+.++.|++||+.++......- .....
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 0 0123457 5567776 66677778999999998765221100 00000
Q ss_pred -CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--------------CCCeEEEEEeCCCCEEEEE
Q 000697 1225 -QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------------RGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1225 -h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h--------------~~~VtsLa~spdg~~Lasg 1289 (1348)
.-....+++++++ |+.+++-+.++.|++||..++ . +.++.+. -.....++++++|+++++-
T Consensus 801 ~~l~~P~Gvavd~d--G~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKD--GQIYVADSYNHKIKKLDPATK-R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCC--CcEEEEECCCCEEEEEECCCC-e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0123468899998 889999999999999999865 2 3333221 1256789999999999999
Q ss_pred eCCCcEEEEEcCCc
Q 000697 1290 SAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~g~ 1303 (1348)
+.++.|++||+...
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999996543
No 281
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.7e-05 Score=97.81 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCCe--EEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADE-NE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGN--IRIW 1109 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~-dg--~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~--IrIW 1109 (1348)
..+.+..|+|||+.|+..+. ++ .|.+||+.+++... +.... .......| ++||+.|+. .+.+|. |.+|
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~---g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP---GINGAPRF--SPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC---CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEE
Confidence 45678899999998887653 33 58888988776432 22212 23346778 789997764 566776 5555
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CC--eEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
|+.+ ++.+. +..+...... ..|++++..|+..+. +| .|.++|+.+++ . ..+...... ....
T Consensus 292 dl~t--g~~~~------lt~~~~~~~~----p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~-~~Lt~~g~~-~~~~- 355 (448)
T PRK04792 292 DIAT--KALTR------ITRHRAIDTE----PSWHPDGKSLIFTSERGGKPQIYRVNLASGK-V-SRLTFEGEQ-NLGG- 355 (448)
T ss_pred ECCC--CCeEE------CccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEEecCCCC-CcCe-
Confidence 6644 33322 3333333333 789999998877653 33 57777887766 3 333211111 2334
Q ss_pred EecCCCCEEEEEeC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCc--EEEEEcCCC
Q 000697 1187 ASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGD--IQFLDIRNH 1260 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~-DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~--I~IWDlr~~ 1260 (1348)
.++++|+.++..+. ++ .|.++|+.+++ .. .+... .......|+|+ |+.|+..+ .+|. +.++|.. +
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~-~lt~~----~~d~~ps~spd--G~~I~~~~~~~g~~~l~~~~~~-G 426 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGA-MQ-VLTST----RLDESPSVAPN--GTMVIYSTTYQGKQVLAAVSID-G 426 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCC-eE-EccCC----CCCCCceECCC--CCEEEEEEecCCceEEEEEECC-C
Confidence 56889988877654 34 45667877765 22 22111 11224579999 77666554 4444 6666764 3
Q ss_pred CcceEEEecCCCCeEEEEEeC
Q 000697 1261 KDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1261 ~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
.....+..+.+.+...+|+|
T Consensus 427 -~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 427 -RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 45666666666778888887
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.48 E-value=0.00024 Score=83.66 Aligned_cols=251 Identities=10% Similarity=0.137 Sum_probs=145.8
Q ss_pred CeEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEeeCCCCC----CCCeEEEEEEeeCCCCEEEEEe-
Q 000697 1037 GTKTALLQPFSPIVVAADE----------NERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS- 1101 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~----------dg~I~VWd~~t~~~l~~~~~h~~~----~~~ItsL~f~ns~d~~~L~tgs- 1101 (1348)
....+ ++||++.|+++.. ++.|.|||..+++.+..+.....+ +.....+++ ++||++|++..
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l--s~dgk~l~V~n~ 124 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL--TPDNKTLLFYQF 124 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE--CCCCCEEEEecC
Confidence 44455 9999998877654 789999999999999988754311 122335667 78999999876
Q ss_pred C-CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecC-CC
Q 000697 1102 C-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPS-SS 1178 (1348)
Q Consensus 1102 ~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~-~~v~~l~~-~~ 1178 (1348)
. +..|.+.|+.. ++ .+.. +.- +. + ...+..+.+ .. ++-+.||........... ........ +.
T Consensus 125 ~p~~~V~VvD~~~--~k--vv~e---i~v--p~--~-~~vy~t~e~-~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 125 SPSPAVGVVDLEG--KA--FVRM---MDV--PD--C-YHIFPTAND-TF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEEECCC--Cc--EEEE---EeC--CC--C-cEEEEecCC-cc-EEEeecCceEEEEecCCCceEEeeeeeecC
Confidence 3 68999999976 22 2211 110 00 0 001222111 11 122233333332222111 01111110 00
Q ss_pred -CCCeEEE-EEecCCCCEEEEEeCCCeEEEEECCCCCe----eeEeecCCC----CCCCCeEEEEEecCCCCCEEEEEE-
Q 000697 1179 -DCSISAL-TASQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPHT----QQVERVVGISFQPGLDPAKIVSAS- 1247 (1348)
Q Consensus 1179 -~~~VtsL-~~~s~dg~~LvsGs~DG~VrvwDlr~~~~----~v~~~~~~~----~h~~~I~sl~~sp~~~g~~LaSgs- 1247 (1348)
..++..- .+...+|..+..... |.|.+.|+..... ....+.... -..+.+.-++++++ ++.+++..
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g~~lyV~~~ 267 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--RDRIYLLAD 267 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC--CCEEEEEec
Confidence 0000000 123347777777776 9999999654321 111111000 02234555999998 66666532
Q ss_pred ---------CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEE-cCCceEEEEe
Q 000697 1248 ---------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGS-AKQLIKVFS-LEGEQLGTIR 1309 (1348)
Q Consensus 1248 ---------~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~-~LasgS-~Dg~I~Vwd-~~g~~l~~i~ 1309 (1348)
..+.|.++|..+. +.+..+.. ...+..++++||++ .|++.+ .++.|.|+| .+++.+.++.
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 1247999999987 67777764 44789999999999 777665 578899999 5677887773
No 283
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=3.9e-05 Score=93.97 Aligned_cols=190 Identities=15% Similarity=0.066 Sum_probs=114.5
Q ss_pred EEEecCCCeE---EEEECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-CC----eEEEEECC
Q 000697 1141 VDWQQQSGYL---YASGEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG----SVRLYDVR 1210 (1348)
Q Consensus 1141 v~ws~~~~~L---l~gg~D--g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-DG----~VrvwDlr 1210 (1348)
-.|+|++..+ +++..+ ..|.+.|+.+++ .. .+....+. .... .++|+|+.|+..+. +| .+..||+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~-~lt~~~g~-~~~p-~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GK-KILALQGN-QLMP-TFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCC-ce-EeecCCCC-ccce-EECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 7899998753 244333 458888988776 22 22221121 3344 67899988876553 23 34557766
Q ss_pred CC--CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEEc--CCCCcceEEEecCCCCeEEEEEeCCCCE
Q 000697 1211 TP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDI--RNHKDAYLTIDAHRGSLSALAVHRHAPI 1285 (1348)
Q Consensus 1211 ~~--~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~IWDl--r~~~~~v~t~~~h~~~VtsLa~spdg~~ 1285 (1348)
.+ ....+... ++.......+|+|+ |+.|+..+ .+|...+|.+ ...+.....+..+...+....|+|+|+.
T Consensus 266 ~g~~g~~~~lt~---~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLN---EAFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeec---CCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 43 11222221 11234467899999 88777655 5676566644 3221234445545556788999999998
Q ss_pred EEEEeCC---CcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-C--CeEEEc
Q 000697 1286 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-D--ACVSIH 1347 (1348)
Q Consensus 1286 LasgS~D---g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-D--g~I~IW 1347 (1348)
|+..+.+ ..|.+||..+.....+.. .. ..+....|+|+|++|+..+. + +.|.+|
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 8876543 468999987666655543 21 34567899999988875443 2 345544
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.45 E-value=3.4e-05 Score=89.15 Aligned_cols=224 Identities=16% Similarity=0.159 Sum_probs=143.6
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEe-e--eecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVT-A--FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs-~--~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~ 1168 (1348)
.||+.++- +..|.|.+||..+. +.+.+. . ...-......+.-..+.-.|+...+.+++--.-|...|.+...+-
T Consensus 276 sDGkrIvF-q~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 46665553 45677999998762 222110 0 000000111111111112244444444444345667776655444
Q ss_pred eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1169 ~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. ++..+...|.-. -...+++-++.|..|| .+-|||.++++ ..+....+ +.|.++..+++ |++++.+.
T Consensus 353 -~---iqv~~~~~VrY~-r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l----g~I~av~vs~d--GK~~vvaN 420 (668)
T COG4946 353 -S---IQVGKKGGVRYR-RIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL----GNIEAVKVSPD--GKKVVVAN 420 (668)
T ss_pred -e---EEcCCCCceEEE-EEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc----cceEEEEEcCC--CcEEEEEc
Confidence 2 222233337666 4566777899999999 89999999987 33333233 78999999999 99999999
Q ss_pred CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCceEEEEeccCCcccccccCCe
Q 000697 1248 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK----QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D----g~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
....+.+.|+.++ .....-+...+-|+.++|||+++++|-+--+ +.|++||+.|..+..+.. .. +.=
T Consensus 421 dr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t-------a~D 491 (668)
T COG4946 421 DRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT-------AYD 491 (668)
T ss_pred CceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc-------ccc
Confidence 9999999999988 4444444556789999999999999987544 579999998877776655 32 233
Q ss_pred EEEEEeCCCCEEEEEE
Q 000697 1324 NCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1324 tslafspdg~~Latgs 1339 (1348)
.+-+|.|++++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 4567888988776443
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.44 E-value=2.4e-05 Score=84.92 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=146.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCcE-EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~-l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
...+||.|+..|...+|...+.+. +.....+. ..|+-+.=. -....-+..++.|.++++.++.....+..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~----- 153 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFA----- 153 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccc---cchhhhhhh-cccccceeeccCCcceeEEEEecCcccce-----
Confidence 345899999999999999886543 33333333 223221110 11233566788999999999865222211
Q ss_pred ecccCCCCc--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCCCCCCeEEEEEecCCCCEEEEEeCC
Q 000697 1125 SSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201 (1348)
Q Consensus 1125 ~~l~~h~~~--V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D 1201 (1348)
-|... +.+ +.+++++..+++.|+...|..|.+..+.. .+..........--+. .++.....|++++.|
T Consensus 154 ----~h~~~~~~ns----~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~-S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 154 ----VHNQNLTQNS----LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN-SFSENDLQFAVVFQD 224 (344)
T ss_pred ----eeccccceee----eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee-eeccCcceEEEEecC
Confidence 12222 334 78899999999999999999998876542 2332222211112344 456778899999999
Q ss_pred CeEEEEECCCCCeee-EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec-------CC-C
Q 000697 1202 GSVRLYDVRTPDMLV-CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-------HR-G 1272 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v-~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~-------h~-~ 1272 (1348)
|++.|||+|....+. ..-.....|.+.+..+.|++.+.-..|...-.-+.+.+.|+|+.. -.+.+.. |. .
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-NHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-eeeEEecCcccccccccc
Confidence 999999999654322 222233458899999999987223455555566889999999874 3333322 22 2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1273 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1273 ~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.|..-.|+.++.-+.+.+.+ .+.=|++.
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ccccccccCCCcccccccch-hhheeecc
Confidence 36666777666655554443 23445443
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.42 E-value=4.6e-06 Score=91.63 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=158.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC-ceeEEeeeecccCCCCcc--------cccceEEEEecCC--Ce
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD-KQKLVTAFSSIQGHKPGV--------RCSNVVVDWQQQS--GY 1149 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~-~~~lvs~~~~l~~h~~~V--------~si~~~v~ws~~~--~~ 1149 (1348)
..|+++.| ...|.+|+||...|.|.+|.-....+ +.+.. ..+++|.... ..-...+.|-.++ ..
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~---teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFF---TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhh---hhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 57999999 77899999999999999997654221 11222 2234443321 1111126676554 36
Q ss_pred EEEEECCCeEEEEECCCCc------------------ee------------------ee-----eecCCCCCCeEEEEEe
Q 000697 1150 LYASGEVSSIMLWDLEKEQ------------------QM------------------VN-----PIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1150 Ll~gg~Dg~IrVWDl~t~~------------------~~------------------v~-----~l~~~~~~~VtsL~~~ 1188 (1348)
++.++.|++|++|.+.... .+ +. .....+..-|.++ .+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi-S~ 180 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI-SF 180 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee-ee
Confidence 8888999999999876431 00 00 0001112235666 45
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC-----CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ-----VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1263 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h-----~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~ 1263 (1348)
..+...+++ ..|=.|.+|.+........... .+.| ..-|++..|+|. ....+.-.+..|.|++-|+|...-+
T Consensus 181 NsD~et~lS-aDdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 181 NSDKETLLS-ADDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred cCchheeee-ccceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhhhc
Confidence 555555554 4677899998886554333331 1122 235889999998 6777888888999999999943211
Q ss_pred ---eEEE------------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE--cCCceEEEEeccCCcccc--------c
Q 000697 1264 ---YLTI------------DAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMA--------Q 1318 (1348)
Q Consensus 1264 ---v~t~------------~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd--~~g~~l~~i~~~h~~f~~--------~ 1318 (1348)
.+.+ .+-...|+.+.|+++|+++++-+. -+|+||| ....++.++.- |...+. .
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech-HHHHHHHHHhhhhcc
Confidence 1111 111346889999999999998765 5899999 45677888765 543211 1
Q ss_pred ccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1319 KIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1319 ~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..-.-..+.|+.+...+.+|+..+..-||
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeee
Confidence 12223457788888888888766554443
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=8.4e-07 Score=102.87 Aligned_cols=281 Identities=15% Similarity=0.292 Sum_probs=178.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000697 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t-------~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1105 (1348)
.|...|..++--.+++-+++++.|.+|++|.++. ..+..+++.|. .+|.++.|. .+-.++ ++.||.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---k~i~~igfL--~~lr~i--~ScD~g 805 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---KPIHDIGFL--ADLRSI--ASCDGG 805 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---Ccccceeee--ecccee--eeccCc
Confidence 4556777777666778899999999999998863 23667788899 899999995 344454 456889
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEec-CCCeEEEE-ECCCeEEEEECCCCceeeeeecCC----CC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSS----SD 1179 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~-~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~----~~ 1179 (1348)
|.+||... +..-..-.+..-.+..+.|. +... +...+++| +...+|+++|.+... .+..++.. .+
T Consensus 806 iHlWDPFi--gr~Laq~~dapk~~a~~~ik------cl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 806 IHLWDPFI--GRLLAQMEDAPKEGAGGNIK------CLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPN 876 (1034)
T ss_pred ceeecccc--cchhHhhhcCcccCCCceeE------ecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCc
Confidence 99999855 22110000000011111222 2222 34445555 467899999999877 66665532 22
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE-EEcC
Q 000697 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF-LDIR 1258 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~I-WDlr 1258 (1348)
..+.++ ...+.|+.+++|-.+|.|.+.|.|+++ .+..|+... .....++- |. ...++....|.++.+ |-.-
T Consensus 877 a~~R~i-aVa~~GN~lAa~LSnGci~~LDaR~G~-vINswrpme---cdllqlaa-ps--dq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 877 ALTRAI-AVADKGNKLAAALSNGCIAILDARNGK-VINSWRPME---CDLLQLAA-PS--DQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred hheeEE-EeccCcchhhHHhcCCcEEEEecCCCc-eeccCCccc---chhhhhcC-ch--hHHHHhhcccceeEeeehhc
Confidence 347788 667889999999999999999999998 666665543 33333332 44 567777777888888 8665
Q ss_pred CCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-----ceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g-----~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
.+ ....+.+....+.. -...-|+-+++......+.||.-.+ ..+..++. +.| .+..++++--|-+.
T Consensus 949 dg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f----~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 949 DG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEF----PGTLTALAPLPLNC 1019 (1034)
T ss_pred CC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc--ccc----CCccceeeeccccc
Confidence 54 23333332222111 0112366677777667788886332 22233332 222 35678888888888
Q ss_pred EEEEEECCCeEEE
Q 000697 1334 LLAAGSADACVSI 1346 (1348)
Q Consensus 1334 ~Latgs~Dg~I~I 1346 (1348)
-+..|+..|.|.+
T Consensus 1020 afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCCCCceee
Confidence 8888888888875
No 288
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=2.5e-06 Score=105.01 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=172.6
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------ 1103 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------ 1103 (1348)
|.....++|.++.|.....++..|+..|.+.-+-....+....|+.|.. ..|..+.- -...+.+.+..
T Consensus 49 ~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~--~~v~~~~~----~~~~i~~ls~~alr~~~ 122 (1118)
T KOG1275|consen 49 SVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSI--DGVRRIEP----TESGIFTLSKTALRATT 122 (1118)
T ss_pred eeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEecc--chhhhhhh----hhhhheeeeHHHhhhhh
Confidence 4445556888999988888888888887776554444444455554441 11222211 11111121111
Q ss_pred -CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000697 1104 -GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1348)
Q Consensus 1104 -G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~V 1182 (1348)
+-+-++|... .....-... +. -+...++.||--..+..+|+++.+ ..+........ |
T Consensus 123 r~gl~~~~~~~--------------~s~~~M~~~----~~--~~~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~-v 180 (1118)
T KOG1275|consen 123 RQGLPVFDFTC--------------PSMTKMASS----LH--MGPSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASG-V 180 (1118)
T ss_pred ccCceeecccC--------------CCHHHHHHH----hc--cCCcceeecchhhheeeeecccce-eeeeeeccCCc-e
Confidence 0011222110 000000011 11 145677778877778899999987 55555444333 5
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---------CCcEE
Q 000697 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---------AGDIQ 1253 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~---------DG~I~ 1253 (1348)
+-| ..+++.+.+|...|+|.+-|.++.+ .++.+. .|.+.|..+.++ |+.|++++. |..|+
T Consensus 181 ~im---R~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~---aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 181 TIM---RYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFD---AHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred EEE---EecCcEEEeecccceEEeecCCcCc-eeeeee---ccccceeeeecc----CCeEEEeecccccccccccchhh
Confidence 555 3468899999999999999999887 555554 566899888875 788988875 45589
Q ss_pred EEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE---cCCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1254 FLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd---~~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
|||+|+. ..+.-+.-+.++ .-+.|+|. ...+++.+..|...+-| +..-....... +. ..+.+..++++
T Consensus 250 VYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p-----~~s~i~~fDiS 321 (1118)
T KOG1275|consen 250 VYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NP-----NGSGISAFDIS 321 (1118)
T ss_pred hhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE-cc-----CCCcceeEEec
Confidence 9999987 455555544443 55778886 44788888889999988 33222333332 22 23559999999
Q ss_pred CCCCEEEEEECCCeEEEcC
Q 000697 1330 PYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1330 pdg~~Latgs~Dg~I~IWd 1348 (1348)
+++..||.|..+|.|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999994
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.9e-05 Score=87.47 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=169.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-----------CCeE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-----------NGNI 1106 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-----------DG~I 1106 (1348)
-+-+.|||-|.+|++--. ..|.+|--++-..++.|. |. .|.-+.| +|..++|+|-+. ...+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp----~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HP----GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CC----Cceeeec--CCccceEEEecCCccccCcccCCCceE
Confidence 356889999999999874 458899766555555554 33 5888899 889999999653 2579
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
+|||+.+ |. +..++..+. ....+.. .+.|+.++.+++.-+. ..|.||+..+-. ++ ..+.-.-..|...
T Consensus 285 ~IWDI~t--G~--lkrsF~~~~-~~~~~WP---~frWS~DdKy~Arm~~-~sisIyEtpsf~-ll-d~Kslki~gIr~F- 352 (698)
T KOG2314|consen 285 IIWDIAT--GL--LKRSFPVIK-SPYLKWP---IFRWSHDDKYFARMTG-NSISIYETPSFM-LL-DKKSLKISGIRDF- 352 (698)
T ss_pred EEEEccc--cc--hhcceeccC-CCccccc---eEEeccCCceeEEecc-ceEEEEecCcee-ee-cccccCCccccCc-
Confidence 9999977 32 222222221 2223333 3899999988887766 458999877643 22 2222222236776
Q ss_pred EecCCCCEEEEEeCC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----------CCCc
Q 000697 1187 ASQVHGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS----------QAGD 1251 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D-----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs----------~DG~ 1251 (1348)
.++|.+++|+-=... ..+.+-.+-+.. .+++...+ .-.=..+.|+.. |.+|+.-- .-..
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlf---nVsDckLhWQk~--gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLF---NVSDCKLHWQKS--GDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccce---eeeccEEEeccC--CcEEEEEEEeeccccccceEee
Confidence 566777776643221 234555554444 22222111 122235667766 77776432 1224
Q ss_pred EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcC--CceEEEEeccCCcccccccCCeEEE
Q 000697 1252 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCL 1326 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~---Dg~I~Vwd~~--g~~l~~i~~~h~~f~~~~~~~Vtsl 1326 (1348)
+.|+.++...-++..+. -...|-..+|-|+|.-+++-+. ..++.+|.++ +....-++. .+ ....+.+
T Consensus 427 ~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~-~d------k~~~N~v 498 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE-LD------KKFANTV 498 (698)
T ss_pred EEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh-hc------ccccceE
Confidence 67788887655665554 4567899999999997766443 3568888754 222111111 11 1456889
Q ss_pred EEeCCCCEEEEEEC---CCeEEEcC
Q 000697 1327 TFHPYQVLLAAGSA---DACVSIHS 1348 (1348)
Q Consensus 1327 afspdg~~Latgs~---Dg~I~IWd 1348 (1348)
.|+|.|++++.++- .|.+.+||
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEe
Confidence 99999999887654 56666664
No 290
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.33 E-value=3.4e-05 Score=105.91 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=182.9
Q ss_pred CchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhh
Q 000697 461 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1348)
Q Consensus 461 ~~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~ 538 (1348)
+-+|.+.++|.++ ..+..|+..|+..-.-..-.+...++-|.+|++++||.++..+.|.-++.++.-+....+.+|.-
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4688899988763 34555665555544434444444557799999999999988889988999999999876677765
Q ss_pred hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcch----------------hHHH-------------------
Q 000697 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG----------------QEAC------------------- 583 (1348)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~g----------------q~~~------------------- 583 (1348)
..+.|.++.++++|.+.+ ++.|..++..|+.+..+-... +..+
T Consensus 526 V~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 557799999999998764 477777777776665322111 1111
Q ss_pred --HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 584 --IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 584 --~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
...+.+..+.++|+ .+++..+.-++-+|+.++.+..+.....+..++...++.+|.++..+||++++.||+
T Consensus 604 g~~~~ggL~~Lv~LL~-------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 604 GSAANDALRTLIQLLS-------SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhhccccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 12457778888888 778999999999999999988887666788888889999999999999999999999
Q ss_pred hhcccCcCCCCCCCCCCCCCchHH-HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhcc
Q 000697 662 TLLDIGFDSCRDGVEGDEECDDDE-KIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 724 (1348)
Q Consensus 662 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~ 724 (1348)
.+.... .+.+ ..-.+...+..|+.++.+.+..|+.+++.+|..++..-+
T Consensus 677 nL~~~~--------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 677 ALSRSI--------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHhCC--------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 998321 1122 222567778889999999999999999999998886543
No 291
>PRK09687 putative lyase; Provisional
Probab=98.30 E-value=1.2e-05 Score=92.35 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=59.1
Q ss_pred hhhhHHh-ccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhH
Q 000697 503 FPYVLKL-LQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1348)
Q Consensus 503 fpyvlkl-L~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~ 581 (1348)
+|.+..+ ++++..+.|..++..+..+..-...-+.. ....+...+.+++ ++-|..++..|+.+-
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~-----a~~~l~~~~~D~~--~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK-----IVEQSQITAFDKS--TNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH-----HHHHHHHHhhCCC--HHHHHHHHHHHhccC--------
Confidence 4444444 44455555655555555543322111111 1112223333332 355555555554331
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
...++..++..|+ |+++.||.|++.+||++-.+.++ +...|..+|.|..++||.+++.+||
T Consensus 157 ---~~~ai~~L~~~L~-------d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ---DEAAIPLLINLLK-------DPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ---CHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2234555555555 55566666666666655211222 2224555556666666666666665
Q ss_pred hh
Q 000697 662 TL 663 (1348)
Q Consensus 662 ~~ 663 (1348)
.+
T Consensus 218 ~~ 219 (280)
T PRK09687 218 LR 219 (280)
T ss_pred cc
Confidence 53
No 292
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.8e-05 Score=95.28 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=192.0
Q ss_pred CCCchhhHHHHhhchhhHH--HHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCch-hhhhHHHHHHHHHhccC-hh
Q 000697 459 PPEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTP-ELRQILVFIWTKILALD-KS 534 (1348)
Q Consensus 459 ~p~~lP~vLq~LlS~~~rl--ral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~-elr~~~~FIwa~il~~~-~~ 534 (1348)
..+-.|+..++|.|+.-.+ .|+--|+++.--||-.++..|+.|+++-.+.+|+.+.. -+..-++..++.+|+.- |+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 3488999999999986554 78889999999999999999999999999999997754 22233677788888874 65
Q ss_pred hhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHH
Q 000697 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 614 (1348)
Q Consensus 535 ~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~ 614 (1348)
-..+-++ .........|...|. +-.+.+|-.|+.+-++-.+.=..-+..++...+..+|. .+.+-++.-+
T Consensus 230 P~~~~v~-~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-------~~~~~v~~Pa 299 (514)
T KOG0166|consen 230 PPFDVVA-PILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-------HSSPKVVTPA 299 (514)
T ss_pred CcHHHHH-HHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-------CCCcccccHH
Confidence 5555554 355666677776664 78899999999999888887777799999999999999 6678888899
Q ss_pred HHHHHHhhccchHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHH
Q 000697 615 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1348)
Q Consensus 615 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1348)
+-++|....+.++-.+..++.++...|..++. .+..-.|+|++..++.+.. +..+.-+.-++..+
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--------------G~~~qiqaVida~l 365 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--------------GNQEQIQAVIDANL 365 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--------------CCHHHHHHHHHccc
Confidence 99999999998888888899999999999997 6666699999999999972 11122233356677
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHH
Q 000697 694 IRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~ls~~~~ 721 (1348)
.-.|+.+...+---.|+|++++++....
T Consensus 366 ~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 366 IPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 7778888777778899999999986543
No 293
>PRK09687 putative lyase; Provisional
Probab=98.28 E-value=1.1e-05 Score=92.67 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=120.7
Q ss_pred cCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhh-ccCCCCchHHHHHHHHHHHHHhcCCcc
Q 000697 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF-LDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1348)
Q Consensus 500 ~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~-L~~~~~~~~~r~~~afiLa~l~~~~~~ 578 (1348)
.-+|+.+.+++++..++.|..++.++..|=.-+ ..|. ..+...... +.+++ ++.|+.++-.|+.++.....
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-----~a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-----NVFNILNNLALEDKS--ACVRASAINATGHRCKKNPL 124 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHhcccccccc
Confidence 346889999999998999999999998764322 1121 122333333 34444 69999999999999754432
Q ss_pred hhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHH
Q 000697 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVF 658 (1348)
Q Consensus 579 gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~ 658 (1348)
. ...+.+.+...+. |++++||..++.+||++-.. .+...|+.+|+|+++.||.++++
T Consensus 125 ~-----~~~a~~~l~~~~~-------D~~~~VR~~a~~aLg~~~~~-----------~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 125 Y-----SPKIVEQSQITAF-------DKSTNVRFAVAFALSVINDE-----------AAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred c-----chHHHHHHHHHhh-------CCCHHHHHHHHHHHhccCCH-----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 1 3345666777777 78999999999999977531 24457999999999999999999
Q ss_pred HHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 659 SLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 659 aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
+||.+- .. ...+...|+..+.|..+.||.+++.+|+.+
T Consensus 182 aLg~~~-~~----------------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNK-YD----------------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCC-CC----------------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 999982 10 012234566777999999999999999864
No 294
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.27 E-value=5.2e-05 Score=104.14 Aligned_cols=240 Identities=22% Similarity=0.201 Sum_probs=181.3
Q ss_pred CCchhhHHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccCh----
Q 000697 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK---- 533 (1348)
Q Consensus 460 p~~lP~vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~---- 533 (1348)
.|-+|.+.++|.++. .+..|+-.|++.---.+-.+.....-|++|.++++|.+...+.|..++..+..++....
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I 566 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI 566 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH
Confidence 378999999998754 44566666666554333344444467999999999998877888777777777753211
Q ss_pred ------------hhhhh---------------------hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 534 ------------SCQVD---------------------LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 534 ------------~~q~~---------------------l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
..+.. ....++......+|...+ ++.|..+|.+|+.++.+.+.-.
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHH
Confidence 11110 112457777778887554 5899999999999998877765
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh-hhccCchhhhhhhccCCCHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~-~~~~~~~~~l~~ll~D~sP~VRaa~v~a 659 (1348)
..-+..+++.-++.+|. ....++|..++.+|+.+..+..+.+.. .++.++...|+.+|++.+.+|+..++.+
T Consensus 645 ~avv~agaIpPLV~LLs-------s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLT-------NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHh-------cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 66678899999999999 778899999999999999876666544 4888898899999999999999999999
Q ss_pred HHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 660 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
|+.+...+ +....+. +......|..++.++++.+|+.++.+|..+...+
T Consensus 718 LanLl~~~--------------e~~~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 718 LANLLSDP--------------EVAAEAL-AEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHcCc--------------hHHHHHH-hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 99999432 1111122 3345677888899999999999999998877654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.27 E-value=0.00075 Score=76.33 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=140.5
Q ss_pred EEEEEeeC-CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000697 1085 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163 (1348)
Q Consensus 1085 sL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD 1163 (1348)
++.| .+ ++.++++--..+.|..|+... +..... ...+ ..+ +.+...++.++++...+ +.++|
T Consensus 4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~----~~~~----~~G----~~~~~~~g~l~v~~~~~-~~~~d 66 (246)
T PF08450_consen 4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDT--GEVEVI----DLPG----PNG----MAFDRPDGRLYVADSGG-IAVVD 66 (246)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTT--TEEEEE----ESSS----EEE----EEEECTTSEEEEEETTC-EEEEE
T ss_pred ceEE--ECCCCEEEEEEcCCCEEEEEECCC--CeEEEE----ecCC----Cce----EEEEccCCEEEEEEcCc-eEEEe
Confidence 5677 45 666777766789999999865 333222 1111 233 56664557888877655 45559
Q ss_pred CCCCceee--eeec-CC-CCCCeEEEEEecCCCCEEEEEeCC--------CeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1164 LEKEQQMV--NPIP-SS-SDCSISALTASQVHGGQLAAGFVD--------GSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1164 l~t~~~~v--~~l~-~~-~~~~VtsL~~~s~dg~~LvsGs~D--------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
..+++ .. .... .. .....+.+ ...++|++.++.... |.|..++.. ++ ........ ...+.
T Consensus 67 ~~~g~-~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~----~~pNG 138 (246)
T PF08450_consen 67 PDTGK-VTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGL----GFPNG 138 (246)
T ss_dssp TTTTE-EEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEE----SSEEE
T ss_pred cCCCc-EEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCc----ccccc
Confidence 88875 32 2221 11 33347788 667889977776644 567777777 33 33223222 56789
Q ss_pred EEEecCCCCCEEE-EEECCCcEEEEEcCCCCcce---EEE---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCce
Q 000697 1232 ISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAY---LTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1304 (1348)
Q Consensus 1232 l~~sp~~~g~~La-Sgs~DG~I~IWDlr~~~~~v---~t~---~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~ 1304 (1348)
++|+|+ ++.|+ +-+..+.|..||+......+ ..+ ....+..-.+++..+|.+.++....+.|.+++.+|+.
T Consensus 139 i~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 999999 77654 66677889999987432211 222 2222347889999999998888888999999999999
Q ss_pred EEEEeccCCcccccccCCeEEEEEe-CCCCEEEEE
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAG 1338 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafs-pdg~~Latg 1338 (1348)
+..+.. .. ..+++++|. ++...|...
T Consensus 217 ~~~i~~-p~-------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIEL-PV-------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE--SS-------SSEEEEEEESTTSSEEEEE
T ss_pred EEEEcC-CC-------CCEEEEEEECCCCCEEEEE
Confidence 998887 32 578999994 565555443
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.26 E-value=3e-06 Score=91.58 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe-----CCCeEEEEECCCCCeeeEeec
Q 000697 1146 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTR 1220 (1348)
Q Consensus 1146 ~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs-----~DG~VrvwDlr~~~~~v~~~~ 1220 (1348)
.+..+++++.||.+.+++.+.-.+....+...+.. --+.+.. ..++.+.++. .-+..+.|+++..+......+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-cccccee-ecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 46778889999999999987633122222222111 1111111 1234443332 123456677665442222221
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEE
Q 000697 1221 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1221 ~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spd-g~~LasgS~Dg~I~Vwd 1299 (1348)
.. ..|++++-+|. ....+++|+.||.+-+||.|+...++..+..|+.+|+.+.|||. +..|.++++||.+.-||
T Consensus 178 ~~----~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 AL----DAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cc----ccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 22 34999999998 67888999999999999999887788888999999999999995 55899999999999999
Q ss_pred cCCceEE
Q 000697 1300 LEGEQLG 1306 (1348)
Q Consensus 1300 ~~g~~l~ 1306 (1348)
.+++.+.
T Consensus 253 as~~~l~ 259 (319)
T KOG4714|consen 253 ASTTFLS 259 (319)
T ss_pred CCCceEE
Confidence 8877766
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=5.7e-05 Score=91.87 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=167.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC----------CCEEEEEeCCCeEE
Q 000697 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD----------VSLLLVASCNGNIR 1107 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d----------~~~L~tgs~DG~Ir 1107 (1348)
-.++.|+|.| ++|-|+ ...|.|-|..+-+.+.+++-|. ..|+.+.|.+.+. .-+|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4467788765 677776 6688999999999999999999 8999999964321 22567777789999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEe---cCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws---~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~Vt 1183 (1348)
+||... +... ..+..|..++.. ++|- ++. ..+++-....+|.+|+..+++ .+-.....+.- ..
T Consensus 93 l~d~~~--~s~~-----~~l~~~~~~~qd----l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~i-Ls 159 (1062)
T KOG1912|consen 93 LVDFVL--ASVI-----NWLSHSNDSVQD----LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEI-LS 159 (1062)
T ss_pred EEEehh--hhhh-----hhhcCCCcchhh----eeeeeccCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcc-ee
Confidence 999865 2222 225667777766 6663 334 345555778899999999998 66666554443 56
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCC---eeeEeecCCCCCCC----------------C---------eEEEEEe
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPD---MLVCSTRPHTQQVE----------------R---------VVGISFQ 1235 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~---~~v~~~~~~~~h~~----------------~---------I~sl~~s 1235 (1348)
|+.+.+-+.+.|..-+..|.|.+.+.-... ...+.++....|.+ . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 676666677778777778888777654211 11111111111111 0 1145678
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~--~LasgS~Dg~I~Vwd 1299 (1348)
|. -+.++-......+.++|++-. .++.......+.+.-+.+-|+++ .|.++-.||.+.+|-
T Consensus 240 p~--~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 240 PH--WRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hh--hhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 87 555555666788999999987 78888887778777888888755 899999999999996
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.00055 Score=83.15 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=153.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1125 (1348)
++..+++++.+|.+..+|.++|+.+.+.+... ....+... .+..+++++.+|.|..+|..+ ++..-.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESD--GAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccC--CCEeeeecCC
Confidence 35677788889999999999999988776544 11122222 245677788899999999876 4433221000
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CCe---EEEEEecC--CCCEEEE
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CSI---SALTASQV--HGGQLAA 1197 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~---~~V---tsL~~~s~--dg~~Lvs 1197 (1348)
.........+.. + . .++.+++++.+|.+..+|..+++ .+-....... ..+ ..+ ...| .++.+++
T Consensus 190 -~~~~~~~~~~sP--~-v--~~~~v~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~-~~sP~v~~~~vy~ 261 (394)
T PRK11138 190 -VPSLTLRGESAP--A-T--AFGGAIVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDV-DTTPVVVGGVVYA 261 (394)
T ss_pred -CCcccccCCCCC--E-E--ECCEEEEEcCCCEEEEEEccCCh-hhheeccccCCCccchhccccc-CCCcEEECCEEEE
Confidence 000000000100 1 1 24568888889999999999887 5443321110 000 000 0011 2456777
Q ss_pred EeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC-CCCeEE
Q 000697 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSA 1276 (1348)
Q Consensus 1198 Gs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-~~~Vts 1276 (1348)
++.+|.+..+|..+++..-+ . .. .....+.. . +..++.++.+|.+..+|..++ +.+-....- .....+
T Consensus 262 ~~~~g~l~ald~~tG~~~W~-~-~~----~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWK-R-EY----GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTA 330 (394)
T ss_pred EEcCCeEEEEECCCCCEEEe-e-cC----CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccC
Confidence 88899999999999873322 1 11 11122222 2 567888889999999999887 333322211 111222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1277 LAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1277 La~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
..+ .+..++.++.||.|.+.| .+|+.+...+. ... .......+ .+..|+.++.||.|..+
T Consensus 331 p~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~------~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 331 PVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSS------GFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCC------cceeCCEE--ECCEEEEEeCCceEEEE
Confidence 223 245777889999999999 57888777654 220 11112222 24468888899998765
No 299
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.17 E-value=1.4e-05 Score=78.90 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred hhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q 000697 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1348)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~L 618 (1348)
.++.++++.++.+|.+.+ +..|.-++.+|+.++.+.+.......+.++++.++.+|+ ++++.+|..++.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-------SEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 567889999999998766 589999999999999998888888889999999999999 78999999999999
Q ss_pred HHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+.|..+.+......++.++...+..++++++..||..++.+|+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888888888889999999999999999999999999875
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=6.5e-06 Score=92.03 Aligned_cols=166 Identities=17% Similarity=0.259 Sum_probs=119.9
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC----eeeEeecCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQ 1224 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~----~~v~~~~~~~~ 1224 (1348)
+-++.|.+-.|-+-|++++. .+.+.. .+.|.++ -+...++++..|+.+|.|..+|+|.+. .....+ -
T Consensus 226 yhfs~G~sqqv~L~nvetg~--~qsf~s--ksDVfAl-Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----y 296 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH--QQSFQS--KSDVFAL-QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----Y 296 (425)
T ss_pred eeecccccceeEEEEeeccc--cccccc--chhHHHH-HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----E
Confidence 33666777789999999886 445553 3347887 455568899999999999999999762 122222 3
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcc---eEEEecCCCCeEEE--EEeCCCCEEEEEeCCCcEEEEE
Q 000697 1225 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1225 h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~---v~t~~~h~~~VtsL--a~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
|.+.|+++..-.. .+.+|++.+.+|+|++||.|.. ++ +.++.+|-..-.-+ .+++....+++++.|...+||.
T Consensus 297 h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhcc-ccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 6688999887663 3889999999999999999976 45 88888886544333 4556667888899999999999
Q ss_pred c-CCceEEEEeccCCcccccccCCeEEEEEe
Q 000697 1300 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1300 ~-~g~~l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
+ +|..+.++.. .. ......+.+++|.
T Consensus 375 l~~ghLl~tipf-~~---s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDSGHLLCTIPF-PY---SASEVDIPSVAFD 401 (425)
T ss_pred cccCceeeccCC-CC---ccccccccceehh
Confidence 5 4777777765 21 1112346666664
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.16 E-value=0.00071 Score=78.65 Aligned_cols=171 Identities=14% Similarity=0.173 Sum_probs=121.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-eEEEEeccCCCCceeEEeee
Q 000697 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1046 dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
+|++++..+ .|...|.+...+-.++. ++. .+|.-..+ ..+++-++.|..|| .+-|+|... ++.+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~---~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~--~e~kr---- 396 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKK---GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDG--GEVKR---- 396 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCC---CceEEEEE--ccCCcceEEeccCCceEEEEecCC--ceEEE----
Confidence 677888887 67777776554444332 233 56777777 56777899999999 899999866 43332
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC--
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1202 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-- 1202 (1348)
+....+.|.. +..+++|+.++++.+...|.+.|+.++. ++.+......-|+.+ .+++++++++-+.-+|
T Consensus 397 --~e~~lg~I~a----v~vs~dGK~~vvaNdr~el~vididngn--v~~idkS~~~lItdf-~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 397 --IEKDLGNIEA----VKVSPDGKKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDF-DWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred --eeCCccceEE----EEEcCCCcEEEEEcCceEEEEEEecCCC--eeEecccccceeEEE-EEcCCceeEEEecCccee
Confidence 3344455555 8888999999999988999999999998 555555455569999 6789999999888776
Q ss_pred --eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000697 1203 --SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1203 --~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
.|++||+..++ ..... +.. +.=.+-+|.|+ +++|.--
T Consensus 468 tq~Iklydm~~~K-iy~vT-T~t---a~DfsPaFD~d--~ryLYfL 506 (668)
T COG4946 468 TQSIKLYDMDGGK-IYDVT-TPT---AYDFSPAFDPD--GRYLYFL 506 (668)
T ss_pred eeeEEEEecCCCe-EEEec-CCc---ccccCcccCCC--CcEEEEE
Confidence 58999999887 44332 222 23345567777 6665543
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.00031 Score=85.66 Aligned_cols=311 Identities=11% Similarity=0.142 Sum_probs=194.1
Q ss_pred ccccccCCCCCeEEEEEcCC---C-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC
Q 000697 1027 IACWDTRFEKGTKTALLQPF---S-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspd---g-~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~ 1102 (1348)
...|-..+..++..++|-+. . ..|++-....+|.+||..+|+++....... ....|+.+.+ -|...+..-+.
T Consensus 101 ~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~---~iLs~f~~DP-fd~rh~~~l~s 176 (1062)
T KOG1912|consen 101 VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH---EILSCFRVDP-FDSRHFCVLGS 176 (1062)
T ss_pred hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC---cceeeeeeCC-CCcceEEEEcc
Confidence 34466667788888988653 3 366666678899999999999988776555 4566788732 36666777777
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCC------------ccc----c---c--ceEEEEecCCCeEEEEECCCeEEE
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKP------------GVR----C---S--NVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~------------~V~----s---i--~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
.|.+-+-+.-...........++.-.+|.. .++ + + ..-++|+|.-..++-....+.+.|
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv 256 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV 256 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence 777777765321111000001111122211 000 0 0 112566777777777777788999
Q ss_pred EECCCCceeeeeecCCCCC-CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCC------------------eeeEeecC-
Q 000697 1162 WDLEKEQQMVNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPD------------------MLVCSTRP- 1221 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~-~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~------------------~~v~~~~~- 1221 (1348)
+|++-+. ++..+....++ ++..+ .-.+..+.+.++..||.+.+|-.+... ..++.++.
T Consensus 257 ~dle~~~-~l~vvpier~~akfv~v-lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~ 334 (1062)
T KOG1912|consen 257 FDLEYEC-CLAVVPIERGGAKFVDV-LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF 334 (1062)
T ss_pred Ecchhhc-eeEEEEeccCCcceeEe-ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence 9999888 88777654443 23333 233445678888899998888765411 01111100
Q ss_pred --------------------------------------------------------------------CCCCCCCeEEEE
Q 000697 1222 --------------------------------------------------------------------HTQQVERVVGIS 1233 (1348)
Q Consensus 1222 --------------------------------------------------------------------~~~h~~~I~sl~ 1233 (1348)
..+|....++..
T Consensus 335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeee
Confidence 012333344443
Q ss_pred EecC---------CCC-------CEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEe-------
Q 000697 1234 FQPG---------LDP-------AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS------- 1290 (1348)
Q Consensus 1234 ~sp~---------~~g-------~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS------- 1290 (1348)
.+|- -++ ..++.|+..|+|.++|+.++ .....+..|.+.|.++.|-....++-.+.
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSAS 493 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeeeeeccceeEEEeeeccccccc
Confidence 3332 012 35789999999999999988 78888999999999999987665553332
Q ss_pred --CCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1291 --AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1291 --~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.-+.+.|-|+....-..|++ ..+....+|..+..+..++||+..-.|.-+-+||
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~----l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRG----LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred cceeeeEEEEEccccccccccc----CCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 12334455544333333432 1224568999999999999999999998888886
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.12 E-value=2.5e-05 Score=89.42 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE---EeCCCeEEE
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLV---ASCNGNIRI 1108 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t---gs~DG~IrI 1108 (1348)
..+..+..++.+.+||++..+....++++.... .+..+.... .-+++.|+ .+.....+ +++...+.+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~--~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFI--REDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----Ccceeeee--eccceEEEEeecCCceeeee
Confidence 456667788999999999988888888876443 233333222 34455553 22333333 345566667
Q ss_pred EeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEe
Q 000697 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1348)
Q Consensus 1109 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~ 1188 (1348)
|.... +..+ .+-||...+.. ++|++|+.+|+++..|..|||-...... .+..+--+|..-|..++..
T Consensus 137 ~s~~~--~~~~------~~lGhvSml~d----VavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 137 LSADS--GRCE------PILGHVSMLLD----VAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLT 203 (390)
T ss_pred ecccc--cCcc------hhhhhhhhhhe----eeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeec
Confidence 76543 3333 24688888887 9999999999999999999998777665 5666665444448888443
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCee
Q 000697 1189 QVHGGQLAAGFVDGSVRLYDVRTPDML 1215 (1348)
Q Consensus 1189 s~dg~~LvsGs~DG~VrvwDlr~~~~~ 1215 (1348)
++..|++|+.|++|++||+++++.+
T Consensus 204 --~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 204 --DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred --cCceeeecCCCCcEEEEecccCCcc
Confidence 4667999999999999999998843
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.12 E-value=0.0011 Score=73.81 Aligned_cols=235 Identities=12% Similarity=0.120 Sum_probs=128.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1041 ALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1041 l~fspdg~~Latgs~dg~I~VWd~~t~--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
++.+.+|+.||+-- |..|.|-..++. ..+.+.+....+.-.-..++| ++|+.+|+.+...|+|+++|+.. ...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g--~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMG--SEL 77 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEeccc--cee
Confidence 56788999888776 777887765543 344444444433346678899 89999999999999999999854 221
Q ss_pred eEEeeeeccc-CCCCcccccceEEEEecC------CCeEEEEECCCeEEEEECCCC--c--ee--eeeecCCCCCCeEEE
Q 000697 1119 KLVTAFSSIQ-GHKPGVRCSNVVVDWQQQ------SGYLYASGEVSSIMLWDLEKE--Q--QM--VNPIPSSSDCSISAL 1185 (1348)
Q Consensus 1119 ~lvs~~~~l~-~h~~~V~si~~~v~ws~~------~~~Ll~gg~Dg~IrVWDl~t~--~--~~--v~~l~~~~~~~VtsL 1185 (1348)
-.+..-.... .....|.+ +.|-+. ...|++-..+|.++-|-+..+ + +. ...+..+....|.++
T Consensus 78 f~I~p~~~~~~d~~~Aiag----l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAG----LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred EEcCcccccCCccccceee----eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 1121111111 11122222 333221 235777788888887765321 1 02 223444545559998
Q ss_pred EEecCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE-EEEEECCCc------EEEEEc
Q 000697 1186 TASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK-IVSASQAGD------IQFLDI 1257 (1348)
Q Consensus 1186 ~~~s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~-LaSgs~DG~------I~IWDl 1257 (1348)
.+.+..++|+.|+. ...-..+. .....+++-.+-.+ ...+ .++...|+. -.+|.+
T Consensus 154 -vy~p~h~LLlVgG~~~~~~~~s~---------------a~~~GLtaWRiL~~-~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 154 -VYHPKHRLLLVGGCEQNQDGMSK---------------ASSCGLTAWRILSD-SPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred -EEcCCCCEEEEeccCCCCCcccc---------------ccccCceEEEEcCC-CCcEEEccccCccccccccccceeec
Confidence 55666677766654 32100000 00112222222111 0001 112222211 123332
Q ss_pred CCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1258 RNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1258 r~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
-+. ............|..|..+|||..||+...+|.|.+|++..
T Consensus 217 ~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 217 PSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 221 11111122456899999999999999999999999999643
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.08 E-value=0.0017 Score=72.29 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=127.6
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
+.+|++|++- .|..|.|=...++-. ..+...+.-++..+.=+. ++|++|+..|+.+...|+|+++|+....
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRk----l~WSpD~tlLa~a~S~G~i~vfdl~g~~-- 76 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRK----LAWSPDCTLLAYAESTGTIRVFDLMGSE-- 76 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheE----EEECCCCcEEEEEcCCCeEEEEecccce--
Confidence 4566666654 455666655544211 111111222222333333 9999999999999999999999998754
Q ss_pred eeeecCC------CCCCeEEEEEecCC-----CCEEEEEeCCCeEEEEECCCC--C--eeeEeecCCCCCCCCeEEEEEe
Q 000697 1171 VNPIPSS------SDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTP--D--MLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1171 v~~l~~~------~~~~VtsL~~~s~d-----g~~LvsGs~DG~VrvwDlr~~--~--~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
+..++.. ....|..|.+.... ...|++-..+|.++-|-+..+ + .....+.-...+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 3344322 22346666444433 335666778888888876321 1 1223332222346789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEE--EEEeCCCc------EEEEEcCCceEEE
Q 000697 1236 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII--ASGSAKQL------IKVFSLEGEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~L--asgS~Dg~------I~Vwd~~g~~l~~ 1307 (1348)
|. .+.|++|+.... ..+ .-++....+++-.+-.+.++. ++...|+. -.+|.+-.-.+..
T Consensus 157 p~--h~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PK--HRLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CC--CCEEEEeccCCC------CCc-----cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 98 777777764322 100 011122334443333332211 12222221 1233322111111
Q ss_pred EeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
.++ +....|..|..+|||..||+...+|.|.+|+
T Consensus 224 ~~~-------~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 224 RQG-------QEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccc-------cCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 111 2347899999999999999999999999995
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.0026 Score=71.08 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=133.7
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1055 ~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
++|+|..||..+|+.+....... ......+... .+++.+++++.++.|..||..+ ++.... ..+ ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~t--G~~~W~---~~~---~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAV---PDGGRVYVASGDGNLYALDAKT--GKVLWR---FDL---PGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEE---EETTEEEEEETTSEEEEEETTT--SEEEEE---EEC---SSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEE---EeCCEEEEEcCCCEEEEEECCC--CCEEEE---eec---cccc
Confidence 37899999999999998886522 0122222222 3677888889999999999866 443322 111 1222
Q ss_pred cccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCC-CCC-eEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 000697 1135 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSS-DCS-ISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1135 ~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-~~~~-~~~-VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~ 1211 (1348)
... . ...++.+++++.++.|+.+|..+++ .+-.. .... ... .... .....++.++++..+|.|..+|.++
T Consensus 69 ~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 69 SGA---P--VVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GSG---E--EEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCSEEEEEETTT
T ss_pred cce---e--eecccccccccceeeeEecccCCcc-eeeeecccccccccccccc-CceEecCEEEEEeccCcEEEEecCC
Confidence 221 1 1247788888888999999999998 66663 3221 110 1111 1122378899999999999999999
Q ss_pred CCeeeEeecCCCCC-CCC------eEEEEEecCCCCCEEEEEECCCc-EEEEEcCCCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1212 PDMLVCSTRPHTQQ-VER------VVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h-~~~------I~sl~~sp~~~g~~LaSgs~DG~-I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
++. +......... ... +..-.+..+ + .++.++.+|. +.+ |+.++ +.+-... ...+..+ ...++
T Consensus 142 G~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~g~~~~~-d~~tg-~~~w~~~--~~~~~~~-~~~~~ 212 (238)
T PF13360_consen 142 GKL-LWKYPVGEPRGSSPISSFSDINGSPVISD--G-RVYVSSGDGRVVAV-DLATG-EKLWSKP--ISGIYSL-PSVDG 212 (238)
T ss_dssp TEE-EEEEESSTT-SS--EEEETTEEEEEECCT--T-EEEEECCTSSEEEE-ETTTT-EEEEEEC--SS-ECEC-EECCC
T ss_pred CcE-EEEeecCCCCCCcceeeecccccceEEEC--C-EEEEEcCCCeEEEE-ECCCC-CEEEEec--CCCccCC-ceeeC
Confidence 984 3333222111 011 122222223 4 7777777776 555 99988 4333222 2223331 44567
Q ss_pred CEEEEEeCCCcEEEEEc-CCceE
Q 000697 1284 PIIASGSAKQLIKVFSL-EGEQL 1305 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~-~g~~l 1305 (1348)
..+++++.++.|..||. +|+.+
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 78888779999999994 55544
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00069 Score=84.15 Aligned_cols=218 Identities=11% Similarity=0.133 Sum_probs=134.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCC-eEEEEEEeeCCCCEEEEEeCCC-----eEEEEeccCCC
Q 000697 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG-ISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQK 1115 (1348)
Q Consensus 1042 ~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~-ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~~ 1115 (1348)
+|++.+..++.|+.+|.|.+.+-. -+.++.|+.+. .. |..+... ...++|++.+.|+ .|+||+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccC
Confidence 467888899999999998888743 34557788877 55 4444431 2336777777664 49999997643
Q ss_pred C-c-eeEEeeeecccCCCCc-ccccceEEEEecCCCeEEEEECCCeEEEEE--CCCCceeeeeecCCCCCCeEEEEEecC
Q 000697 1116 D-K-QKLVTAFSSIQGHKPG-VRCSNVVVDWQQQSGYLYASGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~-~-~~lvs~~~~l~~h~~~-V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWD--l~t~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
+ . +.+....+.+ .+..+ -.....+++.+.+-..+++|-.+|.|..+. +.+.......+....+.+||.+ .+..
T Consensus 104 ~n~sP~c~~~~ri~-~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL-~~~~ 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIF-TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL-ALRS 181 (933)
T ss_pred CCCCcceeeeeeee-ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee-EEec
Confidence 2 2 3333111222 22222 112223477888888899998999999883 3333211223333445579999 4555
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-c
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-A 1269 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~ 1269 (1348)
++..++....-..|.+|.+....+..+ .+..|...+.|..+++. ...+++|+. ..+.+||.... .+-.++. +
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~---~ld~~G~~lnCss~~~~--t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK---VLDNNGISLNCSSFSDG--TYQFICAGS-EFLYFYDSDGR-GPCFAFEVG 254 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee---eeccCCccceeeecCCC--CccEEEecC-ceEEEEcCCCc-ceeeeecCC
Confidence 665523333346799999985442233 34456688999999887 444555544 36999998865 4555555 6
Q ss_pred CCCCe
Q 000697 1270 HRGSL 1274 (1348)
Q Consensus 1270 h~~~V 1274 (1348)
|+..+
T Consensus 255 ~kk~~ 259 (933)
T KOG2114|consen 255 EKKEM 259 (933)
T ss_pred CeEEE
Confidence 65443
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00013 Score=89.06 Aligned_cols=271 Identities=13% Similarity=0.203 Sum_probs=156.2
Q ss_pred eEEEEEcCCCCEEEEEE----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1038 TKTALLQPFSPIVVAAD----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs----~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
.+-..|||..+++++++ ..|.|.||- ++|+.-+...-. -.+++++| +|..-.|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCW--Hpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCW--HPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc----eehhhhcc--ChHHHHHhhccccceeEEEecCC
Confidence 44567999999999887 578898883 445543322211 24567888 77888899999999999999755
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC-Cc-e---------------eeeeecC
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-EQ-Q---------------MVNPIPS 1176 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t-~~-~---------------~v~~l~~ 1176 (1348)
.+... ....|..++.. +.|+++|+.++++..-|.|.+|.... ++ + +...+..
T Consensus 91 --~e~ht-----v~~th~a~i~~----l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~ 159 (1416)
T KOG3617|consen 91 --TETHT-----VVETHPAPIQG----LDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY 159 (1416)
T ss_pred --ceeee-----eccCCCCCcee----EEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence 22222 24567777777 99999999999999999999996541 11 0 0011110
Q ss_pred C--------------CCCCeEEE-------------EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCC-----CC
Q 000697 1177 S--------------SDCSISAL-------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----TQ 1224 (1348)
Q Consensus 1177 ~--------------~~~~VtsL-------------~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~-----~~ 1224 (1348)
. .+..+..+ ..-.++|..|..++.+|+|+-.|-......+...... .+
T Consensus 160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~ 239 (1416)
T KOG3617|consen 160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMG 239 (1416)
T ss_pred ChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhc
Confidence 0 00001101 1123467788889999999988865443222221100 01
Q ss_pred CCCCeEEEE--------EecC---------------CCCC--EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1225 QVERVVGIS--------FQPG---------------LDPA--KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1225 h~~~I~sl~--------~sp~---------------~~g~--~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
....|..+. +.+. .+|+ -++++-..|. ++. .....+. ....++|+++
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv-----Lr~--~eKyg~e-~ge~~~c~cY 311 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV-----LRK--SEKYGLE-LGEGILCMCY 311 (1416)
T ss_pred ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc-----ccC--Ccchhhh-cCCceEEEEE
Confidence 111222111 1111 0000 0222222220 010 0111111 2356999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcC-----C---ceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1280 HRHAPIIASGSAKQLIKVFSLE-----G---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1280 spdg~~LasgS~Dg~I~Vwd~~-----g---~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
+..+..++.|...|.+.+|.-. | .....+.+ .. ...+.|+.+.|.|-...++..+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~-~~----e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG-KR----ESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecC-ch----hhccceEEEEeccccchhhhhh
Confidence 9999999999999999999722 2 22333333 11 2347899999998766555444
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=6.1e-06 Score=100.67 Aligned_cols=214 Identities=15% Similarity=0.218 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~ 1112 (1348)
...-+|++|+-+.++|++|+..|.|++|++.+|........|. ..|+-+.= +.||..+++.+.-. -..+|++.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---cccccccc--cCCcceeeeeccccCchHHHhccc
Confidence 3778999999999999999999999999999999999999999 88988875 77888888776543 47899985
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC--CCCeEEEEEecC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQV 1190 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~--~~~VtsL~~~s~ 1190 (1348)
. .+.. . +.+.+ -. ++.|+.....-+.|+......+||+.+.. .+.++-... ...-..++.++|
T Consensus 1176 s-~~~~--~---Hsf~e----d~----~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1176 S-TGGP--R---HSFDE----DK----AVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred c-ccCc--c---ccccc----cc----eeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence 4 1111 1 11211 12 26776655555666666778999999998 555532211 111223447788
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC
Q 000697 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1191 dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
+..+++ .|| .+||+|..+ .++.+..+. .-..=.|+|+ |..++..+. |||+|+. +.+++...-
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft----~~~~G~FHP~--g~eVIINSE-----IwD~RTF-~lLh~VP~L 1302 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE-AIHRFDQFT----DYGGGGFHPS--GNEVIINSE-----IWDMRTF-KLLHSVPSL 1302 (1516)
T ss_pred CcceEe---eCc--eeeeeccHH-HHhhhhhhe----ecccccccCC--CceEEeech-----hhhhHHH-HHHhcCccc
Confidence 887776 456 479999886 555554442 1223358999 888887764 8999987 566555432
Q ss_pred CCCeEEEEEeCCCCEEEE
Q 000697 1271 RGSLSALAVHRHAPIIAS 1288 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~Las 1288 (1348)
. -..+.|+..|.++..
T Consensus 1303 d--qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 D--QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred c--ceEEEeccCccchhh
Confidence 2 356777777776654
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.97 E-value=8.4e-05 Score=85.29 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=104.9
Q ss_pred eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE---ECCCeEEEEECCCC
Q 000697 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKE 1167 (1348)
Q Consensus 1091 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g---g~Dg~IrVWDl~t~ 1167 (1348)
++++.+|+++..+....+++........++... ... ...-+. +.+-.+.....++ |+...+.+|....+
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~---~~v-~~~~~a----i~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV---SCV-PKRPTA----ISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeE---eec-ccCcce----eeeeeccceEEEEeecCCceeeeeeccccc
Confidence 567788888887777777776553332333311 111 111111 3333445555555 45666777776654
Q ss_pred ceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000697 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1247 (1348)
Q Consensus 1168 ~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs 1247 (1348)
. ...+-+|-.- ++.+ .+++|++.++++..|+.||+-.....- .+..+ .-||+..|..+++.++ ..|++|+
T Consensus 143 ~--~~~~lGhvSm-l~dV-avS~D~~~IitaDRDEkIRvs~ypa~f-~Iesf--clGH~eFVS~isl~~~---~~LlS~s 212 (390)
T KOG3914|consen 143 R--CEPILGHVSM-LLDV-AVSPDDQFIITADRDEKIRVSRYPATF-VIESF--CLGHKEFVSTISLTDN---YLLLSGS 212 (390)
T ss_pred C--cchhhhhhhh-hhee-eecCCCCEEEEecCCceEEEEecCccc-chhhh--ccccHhheeeeeeccC---ceeeecC
Confidence 3 4445555554 8999 788999999999999999997665433 23332 2389999999999875 5699999
Q ss_pred CCCcEEEEEcCCCCcceEEEe
Q 000697 1248 QAGDIQFLDIRNHKDAYLTID 1268 (1348)
Q Consensus 1248 ~DG~I~IWDlr~~~~~v~t~~ 1268 (1348)
.|++|++||++++ +.+.++.
T Consensus 213 GD~tlr~Wd~~sg-k~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSG-KLLDTCD 232 (390)
T ss_pred CCCcEEEEecccC-Ccccccc
Confidence 9999999999998 4555554
No 311
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.95 E-value=7.1e-05 Score=73.89 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=106.4
Q ss_pred HHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCC
Q 000697 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1348)
Q Consensus 497 al~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~ 576 (1348)
.++.|++++++++|++...++|.-++..++.++...+.+....++.++++.++.+|.+.+ +..+.-++.+|+.|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCc
Confidence 357899999999999888889999999999999998888888999999999999998754 689999999999999999
Q ss_pred cchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 577 ~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
+.......+.++...+..+|+ +.+..+|..++.+|+.|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~-------~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLD-------SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHh-------cCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999 778999999999999886
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0039 Score=76.19 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=119.8
Q ss_pred CeEEEEEEeeCCCCE-EEEEeCC---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---
Q 000697 1082 GISKLCLVNELDVSL-LLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--- 1154 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~-L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg--- 1154 (1348)
.+....| ++||+. ++..+.+ ..|.++|+.+ ++.+.+. ...+... ...|+|++..++...
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~~lt------~~~g~~~----~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYT--GKKEKIA------SSQGMLV----VSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCC--CcEEEEe------cCCCcEE----eeEECCCCCEEEEEEccC
Confidence 4566778 789874 5544433 4577778755 5555441 1222222 267999998877653
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1155 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1155 ~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
.+..|.++|+.++. ...+..+... .... .++++|+.|+..+.. | .|.+.|+.+++ ..+.. ..+. . .
T Consensus 255 g~~~Iy~~dl~~g~--~~~LT~~~~~-d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt--~~g~--~--~ 323 (419)
T PRK04043 255 GQPDIYLYDTNTKT--LTQITNYPGI-DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVV--FHGK--N--N 323 (419)
T ss_pred CCcEEEEEECCCCc--EEEcccCCCc-cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCc--cCCC--c--C
Confidence 34568888988776 3334333221 2233 578899887776642 3 58888888776 22222 1111 1 2
Q ss_pred EEEecCCCCCEEEEEECC---------CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEE
Q 000697 1232 ISFQPGLDPAKIVSASQA---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFS 1299 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~D---------G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D---g~I~Vwd 1299 (1348)
..|+|+ |+.++..+.. ..|.+.|+..+ . .+.+... +......|+|||+.++..+.+ ..+.+.+
T Consensus 324 ~~~SPD--G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 324 SSVSTY--KNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred ceECCC--CCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 489999 8777666543 25788888766 2 3334332 223357899999977665433 2466777
Q ss_pred cCCceEEEEec
Q 000697 1300 LEGEQLGTIRY 1310 (1348)
Q Consensus 1300 ~~g~~l~~i~~ 1310 (1348)
++|.....+..
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 88876666644
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.94 E-value=0.0001 Score=91.37 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=129.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee
Q 000697 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1172 (1348)
Q Consensus 1093 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~ 1172 (1348)
++..++.|+-...+..+|+.+ .+.... ..-..+.+. .+. .++..+++|...|+|.+-|.++.+ .++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~--~~e~r~-----~~v~a~~v~----imR--~Nnr~lf~G~t~G~V~LrD~~s~~-~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT--EKETRT-----TNVSASGVT----IMR--YNNRNLFCGDTRGTVFLRDPNSFE-TIH 211 (1118)
T ss_pred CCcceeecchhhheeeeeccc--ceeeee-----eeccCCceE----EEE--ecCcEEEeecccceEEeecCCcCc-eee
Confidence 556677777777788888865 221111 111111121 133 357889999999999999999999 999
Q ss_pred eecCCCCCCeEEEEEecCCCCEEEEEeC---------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000697 1173 PIPSSSDCSISALTASQVHGGQLAAGFV---------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1243 (1348)
Q Consensus 1173 ~l~~~~~~~VtsL~~~s~dg~~LvsGs~---------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~L 1243 (1348)
++.+|++. |..+ +..|+.|++++. |.-|+|||+|..+.+. .+... ..-.-+.|+|. -...+
T Consensus 212 t~~aHs~s-iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~----~~P~flrf~Ps-l~t~~ 281 (1118)
T KOG1275|consen 212 TFDAHSGS-ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFP----YGPQFLRFHPS-LTTRL 281 (1118)
T ss_pred eeeccccc-eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccC-Ccccc----cCchhhhhccc-ccceE
Confidence 99999887 7665 557899998875 5568999999776322 12111 12256778887 46778
Q ss_pred EEEECCCcEEEEEcCCCCcc---eEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1244 VSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1244 aSgs~DG~I~IWDlr~~~~~---v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
++++..|...+-|..+...+ +..+......+.+++++++|..+|.|..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88899999999994433222 333444455699999999999999999999999997
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.011 Score=66.98 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=134.7
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1040 TALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1040 sl~fsp-dg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+.+ ...+..|+.+...+ +.++|..+ ++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----~~~G~~~--~~~~g~l~v~~~~~-~~~~d~~~--g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----GPNGMAF--DRPDGRLYVADSGG-IAVVDPDT--GKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----SEEEEEE--ECTTSEEEEEETTC-EEEEETTT--TEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----CCceEEE--EccCCEEEEEEcCc-eEEEecCC--CcE
Confidence 567888 55566665578999999998765433 3322 2567777 42335566666554 45558755 443
Q ss_pred eEEeeeecccC-CCCcccccceEEEEecCCCeEEEEECC--------CeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1119 KLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEV--------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1119 ~lvs~~~~l~~-h~~~V~si~~~v~ws~~~~~Ll~gg~D--------g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
+....... .. .....+. +++.+++...++.... |.|..++.. ++ . ..+...-. ..+.| .++
T Consensus 73 ~~~~~~~~-~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~-~~~~~~~~-~pNGi-~~s 142 (246)
T PF08450_consen 73 TVLADLPD-GGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-V-TVVADGLG-FPNGI-AFS 142 (246)
T ss_dssp EEEEEEET-TCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-E-EEEEEEES-SEEEE-EEE
T ss_pred EEEeeccC-CCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-E-EEEecCcc-cccce-EEC
Confidence 33311100 11 2223344 7788887755554332 567778877 44 2 22222222 25778 677
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCCCe-e--eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1190 VHGGQLA-AGFVDGSVRLYDVRTPDM-L--VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1190 ~dg~~Lv-sGs~DG~VrvwDlr~~~~-~--v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
++++.|+ +-+..+.|..||+..... . .+.+.......+..-.+++..+ |++.++....+.|.++|.+ + +.+.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G-~~~~ 218 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-G-KLLR 218 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-S-CEEE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-c-cEEE
Confidence 8887664 667788999999974432 1 1122122221234788999998 9988888889999999988 4 6787
Q ss_pred EEecCCCCeEEEEEe-CCCCEEEE
Q 000697 1266 TIDAHRGSLSALAVH-RHAPIIAS 1288 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~s-pdg~~Las 1288 (1348)
.+......+++++|. ++...|..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEE
Confidence 777665689999994 56554443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00054 Score=85.04 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=127.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC-----eEEEEECCCC---
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-----SVRLYDVRTP--- 1212 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-----~VrvwDlr~~--- 1212 (1348)
-+|++.++.++.|+.+|.|.+.+-.- + .++.++.+..+-|+.+ +...+.+.|++.+.|+ .|++||+...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~-~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-Q-LIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-e-eeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 57888999999999999888877432 2 4577777666546666 4444446788777665 4999999743
Q ss_pred --Ceee---Eeec-CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC---CCCcceEEEecCCCCeEEEEEeCCC
Q 000697 1213 --DMLV---CSTR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDAYLTIDAHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1213 --~~~v---~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr---~~~~~v~t~~~h~~~VtsLa~spdg 1283 (1348)
..+. +.+. .......++.+++++.+ -..+|+|-.||.|..+.-. ..+....-....+++||++++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1122 2221 11123567889999988 8999999999999998633 2212222222346799999999988
Q ss_pred CEEEEEeCCCcEEEEEcCCce--EEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1284 PIIASGSAKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1284 ~~LasgS~Dg~I~Vwd~~g~~--l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..++-......|.+|.++|+. +..+.. +..++.|.+|++....+++++ +..+.+|+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDN--------NGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeecc--------CCccceeeecCCCCccEEEec-CceEEEEc
Confidence 862222223579999988877 333333 337888888887766455554 34566654
No 316
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0002 Score=80.23 Aligned_cols=256 Identities=19% Similarity=0.276 Sum_probs=181.5
Q ss_pred CcchHHhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHH-----------
Q 000697 436 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLA----------- 497 (1348)
Q Consensus 436 ~~ff~~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~la----------- 497 (1348)
|+=.++||.|--.|=++=+....|| |-.|-+.+.+-+-.+.+-. |= -.||.-.-
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlq------fE--AaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQ------FE--AAWALTNIASGTTQQTKVV 153 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHH------HH--HHHHHhhhccCcccceEEE
Confidence 5556788877555544444555566 4455555555333332211 21 12664432
Q ss_pred HhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCc-hHHHHHHHHHHHHHhcC-
Q 000697 498 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAY-PEQRAMAAFVLAVIVDG- 575 (1348)
Q Consensus 498 l~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~-~~~r~~~afiLa~l~~~- 575 (1348)
+..|-.|.|++||.++..+.|.-++.-+.-|--..+.|.--.+..|...-.+.+|.+.... ..+| -+...||-+|++
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGk 232 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGK 232 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCC
Confidence 3568899999999999888988777666666666667777777888888889888765431 2333 345678999988
Q ss_pred CcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHH
Q 000697 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRAS 655 (1348)
Q Consensus 576 ~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa 655 (1348)
.|.--|.-+ ..++.++.+++. ..+||+--=+|-+++.|-++..|.-...++.+++.+|+.+|.+++..|..-
T Consensus 233 nP~P~w~~i-sqalpiL~KLiy-------s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 233 NPPPDWSNI-SQALPILAKLIY-------SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred CCCCchHHH-HHHHHHHHHHHh-------hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 455555544 345778888888 678999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 656 AVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 656 ~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
++-+.|.+|... +.+.++-+.-.....+..+++.+...+|||+-+-+|-+-..
T Consensus 305 alR~vGNIVTG~--------------D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 305 ALRSVGNIVTGS--------------DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHhhcCeeecC--------------ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC
Confidence 999999998321 11112334455566677777888889999999888765543
No 317
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.85 E-value=0.00022 Score=95.22 Aligned_cols=152 Identities=21% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCCchhhHHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000697 459 PPEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1348)
Q Consensus 459 ~p~~lP~vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q 536 (1348)
+++.+|.+.++|..+. -|..|+.-|.++.+.- .--+.++++|+++.++.|..++-.+..+=.
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 5677888888886654 5555666666653211 112456677777777888776666644321
Q ss_pred hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000697 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1348)
Q Consensus 537 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l 616 (1348)
+....++..|.+++ ++.|..++..|+.+ .. ...++..|. |++|+||..++-
T Consensus 714 ------~~~~~l~~~L~D~d--~~VR~~Av~aL~~~-~~-------------~~~l~~~l~-------D~~~~VR~~aa~ 764 (897)
T PRK13800 714 ------GDAALFAAALGDPD--HRVRIEAVRALVSV-DD-------------VESVAGAAT-------DENREVRIAVAK 764 (897)
T ss_pred ------CCHHHHHHHhcCCC--HHHHHHHHHHHhcc-cC-------------cHHHHHHhc-------CCCHHHHHHHHH
Confidence 11224566676655 47787777777764 11 122445566 777888888888
Q ss_pred HHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+|+.+......+ ...|..+++|+.|+||++++-+|+.+-
T Consensus 765 aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 765 GLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 888776542211 235667777777777777777777664
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00028 Score=81.64 Aligned_cols=252 Identities=13% Similarity=0.162 Sum_probs=166.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--C-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEec
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEE--D-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t--~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl 1111 (1348)
.-|+.+.-+ --+++.+++-||.++.|.-.. | +.+..+..|. ..|.+++. +.++.++.|++. |..++++|+
T Consensus 10 d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL---~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 10 DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL---GVILSLAV--SYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHH---HHHHhhhc--cccceeEeeccCcccceeEEEe
Confidence 345544333 346899999999999996543 2 4556677787 78888888 679999999888 999999999
Q ss_pred cCCCCceeEEeeeecccCCCCcccccceEEEEecCCC----eEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG----YLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1112 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~----~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
.+- .++.-.+ +....+ + ++|....+ .++++. ++|.|.|+|-.........+..-+..+|..+
T Consensus 84 En~----DminmiK-L~~lPg------~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i- 150 (558)
T KOG0882|consen 84 ENF----DMINMIK-LVDLPG------F-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI- 150 (558)
T ss_pred ecc----chhhhcc-cccCCC------c-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE-
Confidence 651 1110000 111111 1 34433333 455553 7799999997765412334444455679999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCC----CC-eeeEeec------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRT----PD-MLVCSTR------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~----~~-~~v~~~~------~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
...+.++.+++....|.|.-|.... .+ .....++ .....+...+++.|+|+ +..+.+-+.|..|+++
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--GAQISTLNPDRKVRGF 228 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc--cCcccccCcccEEEEE
Confidence 6777899999999999999998773 11 0111110 11123467889999999 9999999999999999
Q ss_pred EcCCCCcceEEEec--------------------------------CC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 000697 1256 DIRNHKDAYLTIDA--------------------------------HR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1302 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~--------------------------------h~-~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g 1302 (1348)
+.+++ +.++.+.. |. ..-+.+.|...|.+|+-|+-=| |+|.++..
T Consensus 229 ~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 229 VFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred Eeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 99987 34433321 11 1235677888899999887655 88888665
Q ss_pred ceEEEEec
Q 000697 1303 EQLGTIRY 1310 (1348)
Q Consensus 1303 ~~l~~i~~ 1310 (1348)
..+..+-+
T Consensus 307 n~v~ri~g 314 (558)
T KOG0882|consen 307 NTVVRILG 314 (558)
T ss_pred CeEEEEec
Confidence 55544443
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.78 E-value=6.9e-05 Score=58.81 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=36.4
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.015 Score=64.88 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=111.3
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC
Q 000697 1146 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1348)
Q Consensus 1146 ~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h 1225 (1348)
+++.+++++.++.|..||..+++ .+-........... . ...++.+++++.++.|+.+|.++++..-+.......-
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~-~---~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGK-VLWRFDLPGPISGA-P---VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSE-EEEEEECSSCGGSG-E---EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-EEEEeeccccccce-e---eecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 58899999999999999999998 66665542221111 1 1245677778889999999999998544322111000
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCC----------eEEEEEeCCCCEEEEEeCCCc-
Q 000697 1226 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS----------LSALAVHRHAPIIASGSAKQL- 1294 (1348)
Q Consensus 1226 ~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~----------VtsLa~spdg~~LasgS~Dg~- 1294 (1348)
............ +..++.+..+|.|..+|.+++ +.+......... +.+-.+..++ .+..++.++.
T Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 110 AGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp CSTB--SEEEEE--TTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred cccccccCceEe--cCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 112222333333 678888888999999999998 676666654322 1222222244 6666666775
Q ss_pred EEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1295 IKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
+.+ |.. |+.+ .+. .. ..+.. ....++..|+.++.|+.|..||
T Consensus 186 ~~~-d~~tg~~~--w~~-~~-------~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 186 VAV-DLATGEKL--WSK-PI-------SGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp EEE-ETTTTEEE--EEE-CS-------S-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred EEE-ECCCCCEE--EEe-cC-------CCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 555 854 5434 232 11 22222 1356777888887899998875
No 321
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.73 E-value=0.00038 Score=92.99 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=108.3
Q ss_pred chhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000697 462 QLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 462 ~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
.++.+++.|..+ .-|..|+..|+++-+ .+.+|-++++|.++..+.|..++--+.+|....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 566778888775 466678888887642 346788889999998899988888887774322221
Q ss_pred hhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
...+..|++++ ++.|..++-.|+.+-.. -...++..|. |++|.||..++.+|+
T Consensus 687 ------~~L~~~L~~~d--~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-------D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 687 ------PALRDHLGSPD--PVVRAAALDVLRALRAG------------DAALFAAALG-------DPDHRVRIEAVRALV 739 (897)
T ss_pred ------HHHHHHhcCCC--HHHHHHHHHHHHhhccC------------CHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 23445666543 68999998888876311 1235667888 899999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.+ +. .+.|+.+++|++|+||.+++-+|+.+-
T Consensus 740 ~~-~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 740 SV-DD-------------VESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred cc-cC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 86 11 124778999999999999999999885
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0002 Score=82.89 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg~I 1159 (1348)
+.|+.+.- ...+++.+++-||.++.|.-.... ..+.+ +.+..|...+.+ ++-+.++-.+.+.++ |..+
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~is-GvEfV---KhFraHL~~I~s----l~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRIS-GVEFV---KHFRAHLGVILS----LAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCcc-ceeeh---hhhHHHHHHHHh----hhccccceeEeeccCcccce
Confidence 56666554 467899999999999999864311 22333 345556666665 555556655566576 8999
Q ss_pred EEEECCCCceeeeeecCCC-CCCeEEEEEecCCC----CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1160 MLWDLEKEQQMVNPIPSSS-DCSISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~-~~~VtsL~~~s~dg----~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
+++|++.-. .+.-++... ...+. |....| .+-++...+|.+.++|-+...+....++ .-|.++|..+.+
T Consensus 79 KvfDvEn~D-minmiKL~~lPg~a~---wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFD-MINMIKLVDLPGFAE---WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRY 152 (558)
T ss_pred eEEEeeccc-hhhhcccccCCCceE---EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEe
Confidence 999998776 443333211 11122 222333 3344456789999999987654433332 247799999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEcCC-CC----cce---------EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1235 QPGLDPAKIVSASQAGDIQFLDIRN-HK----DAY---------LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1235 sp~~~g~~LaSgs~DG~I~IWDlr~-~~----~~v---------~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
.+. +..+++....|.|.-|.... .+ ... ..+.-.+...+++.|+|+|..+++-+.|..|++++.
T Consensus 153 ~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 998 99999999999999998872 10 111 111122456789999999999999999999999995
Q ss_pred -CCceEEE
Q 000697 1301 -EGEQLGT 1307 (1348)
Q Consensus 1301 -~g~~l~~ 1307 (1348)
+|+.++.
T Consensus 231 KtGklvqe 238 (558)
T KOG0882|consen 231 KTGKLVQE 238 (558)
T ss_pred ccchhhhh
Confidence 4444433
No 323
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00027 Score=79.16 Aligned_cols=234 Identities=15% Similarity=0.231 Sum_probs=178.0
Q ss_pred CchhhHHHHhhchhhH--HHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhH--HHHHHHHHhccC---h
Q 000697 461 EQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQI--LVFIWTKILALD---K 533 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~r--lral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~--~~FIwa~il~~~---~ 533 (1348)
+-.|.+.|+|.|.... -.|+-.|++.-.-++-++.-.|..|.+--+|-||++.+..++-+ +...++-.|+.- |
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 6789999999996554 45666777777777788888899999999999999988765543 566677777763 2
Q ss_pred hhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHH
Q 000697 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1348)
Q Consensus 534 ~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w 613 (1348)
+-+. + ........+.+...+ +|.--=+|..+|.|.++-.+.-.+-+..+....+.++|. .++..+..=
T Consensus 237 ~w~~--i-sqalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs-------~~sa~iqtP 304 (526)
T COG5064 237 DWSN--I-SQALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS-------HESAKIQTP 304 (526)
T ss_pred chHH--H-HHHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc-------CccccccCH
Confidence 2221 1 122345555665555 477777888889998888887777789999999999998 556556666
Q ss_pred HHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHH
Q 000697 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1348)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1348)
++=.+|.+..+.+.-..+-|++++...+..+|+.+---+|+|++.-++.+-. +..+.-++-+|..+
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--------------Gnteqiqavid~nl 370 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--------------GNTEQIQAVIDANL 370 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--------------CCHHHHHHHHhccc
Confidence 6667899999988877778999999999999999999999999999998761 11222345577777
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 694 IRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
+-.|+.++.-+.-..|||+-++++-..
T Consensus 371 iPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 371 IPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888877777889999999988654
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.70 E-value=0.012 Score=71.51 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC--CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD--KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~--~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1124 (1348)
+..++++..+|.+..+|.++|+.+..+....+.. ....+-.. .+..++.++.+|.+..+|..+ ++..-....
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v----~~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~ 233 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT----AFGGAIVGGDNGRVSAVLMEQ--GQLIWQQRI 233 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----ECCEEEEEcCCCEEEEEEccC--Chhhheecc
Confidence 4567778889999999999999988876543100 00111112 234577788889998888765 332211000
Q ss_pred ecccC-C----CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe
Q 000697 1125 SSIQG-H----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1125 ~~l~~-h----~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
..-.+ + ...+... ... .++.+++++.+|.+..+|..+++ .+-.... .. ...+ . ..++.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~s---P~v--~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~--~~-~~~~-~--~~~~~vy~~~ 301 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTT---PVV--VGGVVYALAYNGNLVALDLRSGQ-IVWKREY--GS-VNDF-A--VDGGRIYLVD 301 (394)
T ss_pred ccCCCccchhcccccCCC---cEE--ECCEEEEEEcCCeEEEEECCCCC-EEEeecC--CC-ccCc-E--EECCEEEEEc
Confidence 00000 0 0001110 011 26788888899999999999988 5543332 11 1122 1 1366788888
Q ss_pred CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeE-EEE
Q 000697 1200 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALA 1278 (1348)
Q Consensus 1200 ~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vt-sLa 1278 (1348)
.+|.+..+|..+++..-+ ..... .....+..+. +..++.++.+|.|...|..++ +.+...+.....+. ...
T Consensus 302 ~~g~l~ald~~tG~~~W~-~~~~~--~~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 302 QNDRVYALDTRGGVELWS-QSDLL--HRLLTAPVLY----NGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPV 373 (394)
T ss_pred CCCeEEEEECCCCcEEEc-ccccC--CCcccCCEEE----CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCE
Confidence 999999999998873222 11111 0112222232 557888999999999999987 66666654333232 222
Q ss_pred EeCCCCEEEEEeCCCcEEEEE
Q 000697 1279 VHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1279 ~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+ .+..|+.++.||.|+.++
T Consensus 374 ~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 374 V--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred E--ECCEEEEEeCCceEEEEe
Confidence 2 234677788899887765
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.00011 Score=82.53 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=106.7
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC-CCceeEEeeeecccCCC
Q 000697 1053 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1053 gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~ 1131 (1348)
.+.+-.|-+-|+++|.. ..|. .. +.|.++.| ...++++..|..+|.|.++|+... .|+.... + .--|.
T Consensus 230 ~G~sqqv~L~nvetg~~-qsf~-sk---sDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a---~-rlyh~ 298 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ-QSFQ-SK---SDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA---Q-RLYHD 298 (425)
T ss_pred ccccceeEEEEeecccc-cccc-cc---hhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcce---E-EEEcC
Confidence 34466788888887643 3344 22 57999999 677899999999999999999763 2222221 1 12377
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee---eeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~---v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwD 1208 (1348)
..|+++.. +.| ++..|++++.+|.|++||.+--+ + ++.+.+|.+..-.-.....+....+++++.|...|+|.
T Consensus 299 Ssvtslq~-Lq~--s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 299 SSVTSLQI-LQF--SQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cchhhhhh-hcc--ccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 77777332 333 57789999999999999999777 6 88888886542222223455667888899999999999
Q ss_pred CCCCCeeeEee
Q 000697 1209 VRTPDMLVCST 1219 (1348)
Q Consensus 1209 lr~~~~~v~~~ 1219 (1348)
++.+. ..+++
T Consensus 375 l~~gh-Ll~ti 384 (425)
T KOG2695|consen 375 LDSGH-LLCTI 384 (425)
T ss_pred cccCc-eeecc
Confidence 99887 55544
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.68 E-value=0.0077 Score=77.79 Aligned_cols=249 Identities=14% Similarity=0.117 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc---
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY--- 1112 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~--- 1112 (1348)
..|.++.|..+...++.+...|.|.+-|.++..... ...-. .+|.+++| ++|+..++..+..+++.+-.-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd---~GI~aasw--S~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVD---NGISAASW--SPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeecc---CceEEEee--cCCCcEEEEEeCCcEEEEEeccccc
Confidence 579999999999999999999999999887654322 22222 58999999 8999999999988887765430
Q ss_pred -CC-------CCceeEE--------eeeecccC---------CCC--c---ccccceEEEEecCCCeEEEEE----CC-C
Q 000697 1113 -DQ-------KDKQKLV--------TAFSSIQG---------HKP--G---VRCSNVVVDWQQQSGYLYASG----EV-S 1157 (1348)
Q Consensus 1113 -~~-------~~~~~lv--------s~~~~l~~---------h~~--~---V~si~~~v~ws~~~~~Ll~gg----~D-g 1157 (1348)
.. .+..+.+ +.++.-.+ +.. + +.+--..+.|--+|.++++.+ .+ +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 00 0000000 01110000 000 0 111123489998888888852 33 7
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000697 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1348)
Q Consensus 1158 ~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~ 1234 (1348)
.|+|||.+ +. +..........=.++ .|.|.|..+++-. .|+.|.+|..+.-..-.... ........|..++|
T Consensus 223 kirV~drE-g~--Lns~se~~~~l~~~L-sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GA--LNSTSEPVEGLQHSL-SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-ch--hhcccCcccccccce-eecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-CCcccccchheeee
Confidence 89999987 33 333333333323556 5667888888743 45679999876433211111 12222345999999
Q ss_pred ecCCCCCEEEE---EECCCcEEEEEcCCCCc-ceEEEecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 000697 1235 QPGLDPAKIVS---ASQAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1235 sp~~~g~~LaS---gs~DG~I~IWDlr~~~~-~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg~I~Vwd 1299 (1348)
+.+ +..|++ ......|++|-+.+..- ....+....... +.|||... .+.+-..+|.+.+++
T Consensus 298 ns~--sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 298 NSN--SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cCC--CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 998 888887 44445599999886521 112222222222 67777433 222222455555544
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.67 E-value=2.3e-05 Score=93.85 Aligned_cols=233 Identities=22% Similarity=0.287 Sum_probs=145.4
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-----CC
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EV 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-----~D 1156 (1348)
.+.|+++....+..++++|..+|.|-+-.+...... .+....++....++ ++|++-+..++++| .|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~----lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTS----LAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccc----cccccccHHHHHhhhhhhccc
Confidence 566777643445568889999999999887653222 22345667776666 88987655555554 35
Q ss_pred CeEEEEECCCCce-eee--eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000697 1157 SSIMLWDLEKEQQ-MVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1157 g~IrVWDl~t~~~-~v~--~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
..+.|||+.+.-. +.. .+.+.......++++. .+.+++.+|.....++++|+|........+. +..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccce
Confidence 6799999987620 111 1222222335677444 7888999999999999999995432222221 24677888
Q ss_pred EecCCCCCEEEEEECCCcEEEEE-cCCCCcceEEEecCCC----CeEEEEEeCCCC-EEEEEeC-CCcEEEEEcC--C--
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLD-IRNHKDAYLTIDAHRG----SLSALAVHRHAP-IIASGSA-KQLIKVFSLE--G-- 1302 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWD-lr~~~~~v~t~~~h~~----~VtsLa~spdg~-~LasgS~-Dg~I~Vwd~~--g-- 1302 (1348)
+.|- .++++++-. ||.|.+|| .++-+.++.++...+. .+..++|.|... .+++.+. .++|+.|++. +
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 8885 377777665 99999999 5554445544443333 489999999755 4555544 4689999842 1
Q ss_pred ---ceEEEEeccCCcccc---cccCCeEEEEEeCCC
Q 000697 1303 ---EQLGTIRYHHPSFMA---QKIGSVNCLTFHPYQ 1332 (1348)
Q Consensus 1303 ---~~l~~i~~~h~~f~~---~~~~~Vtslafspdg 1332 (1348)
+.-..+.. ...|.- ...+.|.+..||+..
T Consensus 281 ~s~nn~~~~~~-~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 281 GSANNSVFVNY-ESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccccccceeee-cccccccccccccceeecCcCcCC
Confidence 11111111 111211 224578888888755
No 328
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0013 Score=75.71 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
+..+..|+-.|--|+.----| +.-++.|+..-++..|+++..++|..++++++.+....|.+|+..+..++....+.+|
T Consensus 97 le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567778888777776222222 2235889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
...+. -.-|.=+-|-++.++++++.||..-++.+.+..+...|+.- +.+..++.=++++++.|......-+...
T Consensus 176 s~~~~-~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-----~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 176 SSDDP-NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-----NTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred ccCCC-chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-----CcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 84443 34557788889999999999999999999999999999831 2578888999999999998766666655
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
-.......+..+..-..-+++-+++-++-+++.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 555666666677777777899998888888873
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.62 E-value=0.00013 Score=57.23 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=34.6
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+.+.++++ |. +.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~-h~-------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HS-------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SS-------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CC-------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356677777 65 8999999999999999999999999997
No 330
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.012 Score=71.89 Aligned_cols=190 Identities=7% Similarity=-0.026 Sum_probs=113.4
Q ss_pred CeEEEEEcCCCCE-EEEEEC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCC--eEEEE
Q 000697 1037 GTKTALLQPFSPI-VVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNG--NIRIW 1109 (1348)
Q Consensus 1037 ~I~sl~fspdg~~-Latgs~---dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG--~IrIW 1109 (1348)
.+..-.|+|||+. ++..+. +..|.++|+.+++...... .. +......| ++||+.|+. .+.+| .|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~---g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ---GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC---CcEEeeEE--CCCCCEEEEEEccCCCcEEEEE
Confidence 4567889999984 664443 3468888998876544333 22 34556778 789976654 44444 46666
Q ss_pred eccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC-CC--eEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1110 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~-Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
++.. +..+. +..+...... ..|+|++..|+..++ .| .|.++|+.+++ ..+ +...... ..
T Consensus 263 dl~~--g~~~~------LT~~~~~d~~----p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~r-lt~~g~~---~~- 324 (419)
T PRK04043 263 DTNT--KTLTQ------ITNYPGIDVN----GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQ-VVFHGKN---NS- 324 (419)
T ss_pred ECCC--CcEEE------cccCCCccCc----cEECCCCCEEEEEECCCCCceEEEEECCCCC-eEe-CccCCCc---Cc-
Confidence 6644 33332 2322221122 579999988877763 23 68888998877 322 2221111 12
Q ss_pred EecCCCCEEEEEeCC---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-Cc--EEE
Q 000697 1187 ASQVHGGQLAAGFVD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GD--IQF 1254 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~D---------G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-G~--I~I 1254 (1348)
.++++|+.++..... ..|.+.|+.++. .. .+.. . .......|+|+ |+.++..+.+ +. +.+
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~-~LT~-~---~~~~~p~~SPD--G~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IR-RLTA-N---GVNQFPRFSSD--GGSIMFIKYLGNQSALGI 396 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eE-ECCC-C---CCcCCeEECCC--CCEEEEEEccCCcEEEEE
Confidence 568899988776653 368888888776 32 2211 1 12335889999 7766655543 33 455
Q ss_pred EEcC
Q 000697 1255 LDIR 1258 (1348)
Q Consensus 1255 WDlr 1258 (1348)
.++.
T Consensus 397 ~~l~ 400 (419)
T PRK04043 397 IRLN 400 (419)
T ss_pred EecC
Confidence 5554
No 331
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=6.6e-05 Score=92.03 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=131.7
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCe
Q 000697 1070 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149 (1348)
Q Consensus 1070 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~ 1149 (1348)
.++|..++ ...+|++| +.+.+.|++|+..|.|+++++.+ |..+ ....+|...++. +.-+.+|..
T Consensus 1094 w~~frd~~---~~fTc~af--s~~~~hL~vG~~~Geik~~nv~s--G~~e-----~s~ncH~SavT~----vePs~dgs~ 1157 (1516)
T KOG1832|consen 1094 WRSFRDET---ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSS--GSME-----ESVNCHQSAVTL----VEPSVDGST 1157 (1516)
T ss_pred chhhhccc---cceeeEEe--ecCCceEEeeeccceEEEEEccC--cccc-----cccccccccccc----ccccCCcce
Confidence 34566677 78999999 78899999999999999999977 4333 236788888877 565667888
Q ss_pred EEEEEC-CC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000697 1150 LYASGE-VS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1348)
Q Consensus 1150 Ll~gg~-Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~ 1227 (1348)
+++.+. .. -..+|++..--...+++.+. .++ -++.....-+.|+....+.+||+.+...+...+....+...
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed-----~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED-----KAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccccc-----cee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 777753 33 57799987533255555542 333 23333333445666678999999998855443433222233
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1228 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1228 ~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
.-++..|+|. ...++ .|| .+||+|.. +.++.|......+ .=.|||+|.-++..+ .|||+.
T Consensus 1232 ~~n~a~FsP~--D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1232 SNNLAHFSPC--DTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred hccccccCCC--cceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhH
Confidence 3478899998 66554 345 48999987 6777666443222 236999999888776 478854
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0046 Score=79.28 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=127.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-ECCCeE
Q 000697 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSI 1159 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~Dg~I 1159 (1348)
....+|+.-...|..+++-|+ .|-|++... .+..+..+.+..+....+......-.+-...+...|+.. .....|
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~-~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGS---KIGVFKNTD-DDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CccceeEeeeccCceEEECCC---cEeEEECCC-CCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 344555552112444444333 477777653 233444444333332222111100012233444555554 356789
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEec----CCCCEEEEEeCCCeEEEEECCCCC-eeeEeecCCC-CCCCCeEEEE
Q 000697 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQ----VHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHT-QQVERVVGIS 1233 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~~~VtsL~~~s----~dg~~LvsGs~DG~VrvwDlr~~~-~~v~~~~~~~-~h~~~I~sl~ 1233 (1348)
+-.|+++++ .+..+..+...+|..++-.. .++...+.|-.+..+..||.|-.. +++... .+. ......+|++
T Consensus 507 y~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 507 YKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNNFSCFA 584 (794)
T ss_pred EEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCCceEEE
Confidence 999999999 99999998877777773221 123455678889999999999643 233211 111 2234567777
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
-+. ..+||+|+.+|.||+||- .+......+.+-..+|.+|+++.||+++++.+. ..+.+++
T Consensus 585 Tt~---~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 585 TTE---DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ecC---CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 654 468999999999999994 333555566677889999999999998877654 4677777
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.003 Score=78.31 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=117.7
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
+..++-|+.+|.|++++....- .+...|+.+ ..+|.++++|+.||+|.|..+-+.+. .... .+ .
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~-~~~~-df---~ 112 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE-ITQY-DF---K 112 (846)
T ss_pred cceeeeccccceEEEEecCCcc---ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc-ceeE-ec---C
Confidence 6788888999999999875432 222233221 45799999999999999999988773 3333 22 2
Q ss_pred CCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCcceE-EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-C
Q 000697 1227 ERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-E 1301 (1348)
Q Consensus 1227 ~~I~sl~~sp~---~~g~~LaSgs~DG~I~IWDlr~~~~~v~-t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~-~ 1301 (1348)
.++.+|+++|+ ...+.+++|+..| +.++.-+-.+.... ......|+|.++.|. |.++|-++.+| |+|||+ .
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccc
Confidence 68999999998 3567899999999 87876553322211 355567899999995 67898888777 899994 5
Q ss_pred CceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1302 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1302 g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
+..+..++..+. .......-..+.|.++.++++ | +..+|+|
T Consensus 189 ~~~l~~i~~p~~--~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i 229 (846)
T KOG2066|consen 189 RQRLTNIPPPSQ--SVRPELFPPHLHWQDEDRLVI-G-WGDSVKI 229 (846)
T ss_pred cceeeccCCCCC--CCCcccCCCceEecCCCeEEE-e-cCCeEEE
Confidence 666666665221 111112234577776654443 3 3334554
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.48 E-value=0.01 Score=76.83 Aligned_cols=200 Identities=18% Similarity=0.142 Sum_probs=130.5
Q ss_pred CcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECC-
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR- 1210 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr- 1210 (1348)
..|.+ +.|..+...++++...|.|.+-|..+.. ..+-+.-+..|.++ .+++++..++..+.++++.+-+-.
T Consensus 69 ~~i~s----~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg~vd~GI~aa-swS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVS----VQFLADTNSICVITALGDIILVDPETLE---LEIVGNVDNGISAA-SWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEE----EEEecccceEEEEecCCcEEEEcccccc---eeeeeeccCceEEE-eecCCCcEEEEEeCCcEEEEEeccc
Confidence 45555 8888899999999999999999877654 33334444458888 788999999988888887664331
Q ss_pred ---CCCee----------e--------EeecCCCC------------------CCCCeEEEEEecCCCCCEEEEEE----
Q 000697 1211 ---TPDML----------V--------CSTRPHTQ------------------QVERVVGISFQPGLDPAKIVSAS---- 1247 (1348)
Q Consensus 1211 ---~~~~~----------v--------~~~~~~~~------------------h~~~I~sl~~sp~~~g~~LaSgs---- 1247 (1348)
..+.. + ..+++..| ..+.=++|+|--+ |.++++..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESE 218 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEecc
Confidence 11100 0 01110000 1112345888776 88988732
Q ss_pred -CCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEcCCceEEEEeccCCcccccccCCe
Q 000697 1248 -QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1248 -~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg---S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
....|++||-. + ..-.+-....+.-.+++|-|.|..+|+- ++|+.|.+|.-+|-.-..+.. . +. .....|
T Consensus 219 ~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~--~p-~de~~v 292 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-P--FP-LDEKEV 292 (1265)
T ss_pred CCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-C--Cc-ccccch
Confidence 23689999977 3 2222222234445689999999999885 456689999988866444432 1 11 122349
Q ss_pred EEEEEeCCCCEEEE---EECCCeEEEc
Q 000697 1324 NCLTFHPYQVLLAA---GSADACVSIH 1347 (1348)
Q Consensus 1324 tslafspdg~~Lat---gs~Dg~I~IW 1347 (1348)
..++|+.++..||+ ......|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999998 4445559988
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.45 E-value=0.073 Score=61.18 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred CeEEEEEcCCC-CEEEEEECCCc-EEEEECCCCcEEEEeeCCCCCCCCe--EEEEEEeeCCCCEEEEEeC-----CCeEE
Q 000697 1037 GTKTALLQPFS-PIVVAADENER-IKIWNYEEDTLLNSFDNHDFPDKGI--SKLCLVNELDVSLLLVASC-----NGNIR 1107 (1348)
Q Consensus 1037 ~I~sl~fspdg-~~Latgs~dg~-I~VWd~~t~~~l~~~~~h~~~~~~I--tsL~f~ns~d~~~L~tgs~-----DG~Ir 1107 (1348)
....++.+|.. ..++.+-.-|+ ..+||..+++....+.... +.- -.-.| ++||++|+|.-. .|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~---gRHFyGHg~f--s~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP---GRHFYGHGVF--SPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC---CCEEecCEEE--cCCCCEEEEeccccCCCcEEEE
Confidence 45678889954 46666766665 6789999998887665432 111 13367 789999999744 48999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEE-EC------CC-----------eEEEEECCCCce
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GE------VS-----------SIMLWDLEKEQQ 1169 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~g-g~------Dg-----------~IrVWDl~t~~~ 1169 (1348)
|||... ..+.+ ..+..+.-.-.. +.+.+++..|+++ |. .| ++...|..+++
T Consensus 81 Vyd~~~---~~~ri---~E~~s~GIGPHe----l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~- 149 (305)
T PF07433_consen 81 VYDAAR---GYRRI---GEFPSHGIGPHE----LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA- 149 (305)
T ss_pred EEECcC---CcEEE---eEecCCCcChhh----EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-
Confidence 999963 22223 223434333344 6778888888887 21 12 34455677777
Q ss_pred eeeeecC----CCCCCeEEEEEecCCCCEEEEEeCCCe-------EEEEECCCCCeeeEeecC----CCCCCCCeEEEEE
Q 000697 1170 MVNPIPS----SSDCSISALTASQVHGGQLAAGFVDGS-------VRLYDVRTPDMLVCSTRP----HTQQVERVVGISF 1234 (1348)
Q Consensus 1170 ~v~~l~~----~~~~~VtsL~~~s~dg~~LvsGs~DG~-------VrvwDlr~~~~~v~~~~~----~~~h~~~I~sl~~ 1234 (1348)
.+..... |..+ |..| ....+|..++..-..|. |-+++.... ...+.. ...-...+-+|++
T Consensus 150 ll~q~~Lp~~~~~lS-iRHL-a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 150 LLEQVELPPDLHQLS-IRHL-AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred eeeeeecCccccccc-eeeE-EecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEE
Confidence 5555322 3344 8888 55666666555443332 333333221 111110 0112368999999
Q ss_pred ecCCCCCEE-EEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1235 QPGLDPAKI-VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1235 sp~~~g~~L-aSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
+++ +..+ +|+=..|.+.+||..++ ..+....- ..+..++..+++ ++++.+ .|.+
T Consensus 225 ~~~--g~~ia~tsPrGg~~~~~d~~tg-~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 225 DRD--GRLIAVTSPRGGRVAVWDAATG-RLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eCC--CCEEEEECCCCCEEEEEECCCC-CEeecccc--CceeeeeecCCc-eEEeCC-CccE
Confidence 998 7666 55557788999999988 56555442 346777777776 555543 3443
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.086 Score=57.98 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=61.6
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1028 ~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
-.|....+.+|.+-+.- -|++++.|...|.+++.+..+|+....|..-. .|.+-+-. ..++.++..|+.|++..
T Consensus 45 ~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~~-d~~~glIycgshd~~~y 118 (354)
T KOG4649|consen 45 LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVKVRAQC-DFDGGLIYCGSHDGNFY 118 (354)
T ss_pred EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh----hhccceEE-cCCCceEEEecCCCcEE
Confidence 35776666666655544 57789999999999999999998888887655 33333322 56999999999999999
Q ss_pred EEeccC
Q 000697 1108 IWKDYD 1113 (1348)
Q Consensus 1108 IWdl~~ 1113 (1348)
.-|.++
T Consensus 119 alD~~~ 124 (354)
T KOG4649|consen 119 ALDPKT 124 (354)
T ss_pred Eecccc
Confidence 999866
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.15 Score=62.18 Aligned_cols=246 Identities=12% Similarity=0.179 Sum_probs=132.2
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECC----------C-cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADEN----------E-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~d----------g-~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~ 1098 (1348)
|+.+....=..++..|.|..+|...++ . .|+||+.. |+.+.++.-.. +.|.++.| .. ...|+
T Consensus 23 W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~w--t~-~e~Lv 95 (410)
T PF04841_consen 23 WSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGW--TD-DEELV 95 (410)
T ss_pred CCccccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEE--CC-CCeEE
Confidence 655543333456677777777776543 2 48999876 77887766554 68999999 43 56677
Q ss_pred EEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEE-ECCCCceeee---ee
Q 000697 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW-DLEKEQQMVN---PI 1174 (1348)
Q Consensus 1099 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVW-Dl~t~~~~v~---~l 1174 (1348)
+-..||.+++||+.... ...+. ... ....|........+..++|.++..+ ++.+.+. +..... ..+ .+
T Consensus 96 vV~~dG~v~vy~~~G~~-~fsl~---~~i--~~~~v~e~~i~~~~~~~~GivvLt~-~~~~~~v~n~~~~~-~~~~~~~~ 167 (410)
T PF04841_consen 96 VVQSDGTVRVYDLFGEF-QFSLG---EEI--EEEKVLECRIFAIWFYKNGIVVLTG-NNRFYVVNNIDEPV-KLRRLPEI 167 (410)
T ss_pred EEEcCCEEEEEeCCCce-eechh---hhc--cccCcccccccccccCCCCEEEECC-CCeEEEEeCccccc-hhhccccC
Confidence 77899999999985311 00000 000 1111111000011222344444433 3444333 322221 111 11
Q ss_pred cCCC-----CCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1175 PSSS-----DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1175 ~~~~-----~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
.... ......+.....+....+....++.+.+.|-...+. + ...+++..++++|+ |++++.-..+
T Consensus 168 p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i----~~~~~i~~iavSpn--g~~iAl~t~~ 237 (410)
T PF04841_consen 168 PGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----I----DSDGPIIKIAVSPN--GKFIALFTDS 237 (410)
T ss_pred CCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----c----cCCCCeEEEEECCC--CCEEEEEECC
Confidence 1110 000111112333445555555566666554333221 1 11368999999999 9999999999
Q ss_pred CcEEEEEcCCCCcceEEEecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1303 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h-~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~ 1303 (1348)
|.+.+.+..-. +.+..+... ......+.|.-+..+++.- ...|.+....+.
T Consensus 238 g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~ 289 (410)
T PF04841_consen 238 GNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGD 289 (410)
T ss_pred CCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCC
Confidence 99999987655 555555543 4466788887665444433 334555554443
No 338
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.41 E-value=0.03 Score=64.27 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=124.6
Q ss_pred EEEecCCCeEEEE-ECCC-eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeC-----CCeEEEEECCCCC
Q 000697 1141 VDWQQQSGYLYAS-GEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-----DGSVRLYDVRTPD 1213 (1348)
Q Consensus 1141 v~ws~~~~~Ll~g-g~Dg-~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~-----DG~VrvwDlr~~~ 1213 (1348)
++.+|.....++- -.-| ...+||..+++ ....+....+.-...=..++++|++|++.-. .|.|-|||.+..-
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~-~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQ-LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 5566755544444 3444 47899999998 7777665444323333468899999998643 5899999999433
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------------------CCcEEEEEcCCCCcceEEEe----cCC
Q 000697 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------------------AGDIQFLDIRNHKDAYLTID----AHR 1271 (1348)
Q Consensus 1214 ~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~------------------DG~I~IWDlr~~~~~v~t~~----~h~ 1271 (1348)
..+..+ ..|.-.-..+.+.|+ |+.|+++.. +-.+.+.|.+++ +.+.... .|+
T Consensus 89 ~ri~E~---~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 89 RRIGEF---PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQ 162 (305)
T ss_pred EEEeEe---cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccc
Confidence 234433 333345566778888 777766532 233555666666 5555533 367
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCc-------EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC-CCe
Q 000697 1272 GSLSALAVHRHAPIIASGSAKQL-------IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1343 (1348)
Q Consensus 1272 ~~VtsLa~spdg~~LasgS~Dg~-------I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~-Dg~ 1343 (1348)
..|+.+++.++|.+++..-..|. |-+++. ++.+..+.. .......-.+.+-+++++.++.++++.+- .|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 78999999999887776644432 333332 222333332 22111233468999999999988766655 788
Q ss_pred EEEcC
Q 000697 1344 VSIHS 1348 (1348)
Q Consensus 1344 I~IWd 1348 (1348)
+.+||
T Consensus 241 ~~~~d 245 (305)
T PF07433_consen 241 VAVWD 245 (305)
T ss_pred EEEEE
Confidence 99985
No 339
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0078 Score=69.50 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=128.7
Q ss_pred hhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHH
Q 000697 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1348)
Q Consensus 503 fpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 582 (1348)
+|-+.--.++...|-|..+.+-+.-.+....+++ ++++-+|..-.+.+|+..+ +++|..+|.+++...+|+|..|..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~~l~~~~--~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLGYLENSD--AELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHHHhcCCc--HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444444455666778888877777666665 7889999999999888776 499999999999999999999999
Q ss_pred HHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccC--CCHHHHHHHHHHH
Q 000697 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSL 660 (1348)
Q Consensus 583 ~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sP~VRaa~v~aL 660 (1348)
.++.++..+++..|.. +..-.+|.-+.++++.|+.+++.+.....+.+-...|...+++ .++..+.=+++.+
T Consensus 162 v~E~~~L~~Ll~~ls~------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILSS------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHcc------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999984 5566789999999999999999999988887778789999987 6777777788889
Q ss_pred Hhhccc
Q 000697 661 GTLLDI 666 (1348)
Q Consensus 661 ~~~i~~ 666 (1348)
+.++..
T Consensus 236 ~~Ll~~ 241 (342)
T KOG2160|consen 236 SLLLQE 241 (342)
T ss_pred HHHHHh
Confidence 988843
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.38 E-value=0.00011 Score=88.19 Aligned_cols=249 Identities=14% Similarity=0.189 Sum_probs=145.2
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCcEE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----CCCeEE
Q 000697 1036 KGTKTALLQP--FSPIVVAADENERIKIWNYEEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVAS----CNGNIR 1107 (1348)
Q Consensus 1036 ~~I~sl~fsp--dg~~Latgs~dg~I~VWd~~t~~~l--~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----~DG~Ir 1107 (1348)
..+.|+++.- +..++++|..+|.|.+-......-- .....+. ..+++++|. +-|.+.|++|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---r~Ct~lAwn-eLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---RPCTSLAWN-ELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---ccccccccc-cccHHHHHhhhhhhcccCCcc
Confidence 4566776543 3358899999999999876533211 1223344 688999994 56778888874 356799
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~ 1187 (1348)
|||+...-..+. ..+.-..+...... +++|..+...+++|...+.+.++|++........+.. . .|..++.
T Consensus 133 Iwdi~s~ltvPk--e~~~fs~~~l~gqn----s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLTVPK--ESPLFSSSTLDGQN----SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITV 203 (783)
T ss_pred ceecccccCCCc--cccccccccccCcc----ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hccccee
Confidence 999976211111 11111111222233 3889878888888888889999999843312223322 1 1455533
Q ss_pred ecCCCCEEEEEeCCCeEEEEE-CCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCC---
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYD-VRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHK--- 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwD-lr~~~~~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~-DG~I~IWDlr~~~--- 1261 (1348)
.+-.++++++-. ||.|-+|| .+.-+..+..+...+ .....+..++|.|. ....+++.+. .++|+++|++...
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-rtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-RTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-CcchhhhhccCcceEEEecccccCCcc
Confidence 333677777654 99999999 555443333331111 11235899999998 3445555554 5789999987432
Q ss_pred ----cceEE------EecCC--CCeEEEEEeCCCC--EEEEEeCCCcEEEEE
Q 000697 1262 ----DAYLT------IDAHR--GSLSALAVHRHAP--IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ----~~v~t------~~~h~--~~VtsLa~spdg~--~LasgS~Dg~I~Vwd 1299 (1348)
..... ++... ..|.++.||+..+ ....+..+-.++-++
T Consensus 282 s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~ 333 (783)
T KOG1008|consen 282 SANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFS 333 (783)
T ss_pred cccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhcc
Confidence 11111 11112 4688888887652 333443333444333
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0059 Score=75.81 Aligned_cols=145 Identities=15% Similarity=0.264 Sum_probs=100.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEeCCCeEEEEeccCCCCcee
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASCNGNIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~DG~IrIWdl~~~~~~~~ 1119 (1348)
.+|.++++|+.||+|.|-.+.+.+...++.-+. ++.++++ +|+ .+.+++||..| +.++.-.-.+.+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r----piksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR----PIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS 153 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecCC----cceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence 368999999999999999998888777776665 8899999 555 57899999998 66664321111111
Q ss_pred EEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-----CeEEEEEecCCCCE
Q 000697 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-----SISALTASQVHGGQ 1194 (1348)
Q Consensus 1120 lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~-----~VtsL~~~s~dg~~ 1194 (1348)
. .+....+.|.+ +.|. |..|+-+.++| |+|||+.+++ .+..++..+.. .-..+ .|. +.+.
T Consensus 154 v-----~l~~~eG~I~~----i~W~--g~lIAWand~G-v~vyd~~~~~-~l~~i~~p~~~~R~e~fpphl-~W~-~~~~ 218 (846)
T KOG2066|consen 154 V-----VLSEGEGPIHS----IKWR--GNLIAWANDDG-VKVYDTPTRQ-RLTNIPPPSQSVRPELFPPHL-HWQ-DEDR 218 (846)
T ss_pred e-----eeecCccceEE----EEec--CcEEEEecCCC-cEEEeccccc-eeeccCCCCCCCCcccCCCce-Eec-CCCe
Confidence 1 24455666776 8886 66777777777 9999999988 77766644332 11234 343 3556
Q ss_pred EEEEeCCCeEEEEECCCC
Q 000697 1195 LAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1195 LvsGs~DG~VrvwDlr~~ 1212 (1348)
++.|=.| +|+|..++.+
T Consensus 219 LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEecCC-eEEEEEEecc
Confidence 7777655 7889888833
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.35 E-value=0.069 Score=60.33 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=117.9
Q ss_pred ecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCe
Q 000697 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1348)
Q Consensus 1125 ~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~ 1203 (1348)
+.+.+....+.+ ++|+++++.|++.. ..+.|..++.. ++ .++.+........-.|++ -.++.++++.-.++.
T Consensus 15 ~~l~g~~~e~SG----LTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLPGILDELSG----LTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQR 87 (248)
T ss_dssp EE-TT--S-EEE----EEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTE
T ss_pred eECCCccCCccc----cEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCc
Confidence 345666666777 99999988887775 56888888864 56 677776543333677744 344555554445899
Q ss_pred EEEEECCCCCe-----eeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC--CCcceEEEe------
Q 000697 1204 VRLYDVRTPDM-----LVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN--HKDAYLTID------ 1268 (1348)
Q Consensus 1204 VrvwDlr~~~~-----~v~~~~--~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~--~~~~v~t~~------ 1268 (1348)
+.++++..... .+..+. ....++..+-.++|++. ++.|+.+-...-..+|.++. ....+....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 99999843221 111121 12234567999999998 66666676666677777764 111221111
Q ss_pred --cCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCceEEEEeccCCcccc--cccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1269 --AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1269 --~h~~~VtsLa~spdg-~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~--~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
..-..+++++++|.. .+++-...++.|..+|.+|+.+..+.- ..++.+ .....--+|+|.++|.+.++ +.-+.
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L-~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl 243 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSL-DRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL 243 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEe-CCcccCcccccCCccEEEECCCCCEEEE-cCCce
Confidence 123468999999974 566777778889999999998888776 443322 33345789999999865554 46666
Q ss_pred EEEc
Q 000697 1344 VSIH 1347 (1348)
Q Consensus 1344 I~IW 1347 (1348)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0071 Score=69.76 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEec
Q 000697 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1348)
Q Consensus 1033 ~~~~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1111 (1348)
.++..|..++|+|+.. ++..++-+..|+|.|+++...+..+..+. .+++++|. -.+.++++.|-.+|.|.|||+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~wSC~wD-lde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QIWSCCWD-LDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cceeeeec-cCCcceeEEeccCceEEEEEc
Confidence 3456799999999988 78889999999999999999999888887 89999994 345678999999999999999
Q ss_pred cCC
Q 000697 1112 YDQ 1114 (1348)
Q Consensus 1112 ~~~ 1114 (1348)
...
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 763
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.30 E-value=0.11 Score=65.21 Aligned_cols=277 Identities=12% Similarity=0.026 Sum_probs=145.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCC--CC-CCe--EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEE
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDF--PD-KGI--SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~--~~-~~I--tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv 1121 (1348)
+..+.+++.++.|.-.|.++|+.+.++..... .. ..+ ..+.. .++..++.++.+|.|.-+|..+ ++..-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~T--G~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAET--GKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCC--CCEeee
Confidence 45677777789999999999998887765431 00 001 11122 1236888899999999999876 443322
Q ss_pred eeeecccCC---CCcccccceEEEEecCCCeEEEEE---------CCCeEEEEECCCCceeeeeecCCCC----------
Q 000697 1122 TAFSSIQGH---KPGVRCSNVVVDWQQQSGYLYASG---------EVSSIMLWDLEKEQQMVNPIPSSSD---------- 1179 (1348)
Q Consensus 1122 s~~~~l~~h---~~~V~si~~~v~ws~~~~~Ll~gg---------~Dg~IrVWDl~t~~~~v~~l~~~~~---------- 1179 (1348)
.....+ ...+.+.. .. .++.+++++ .+|.|..+|..+++ .+-.+.....
T Consensus 136 ---~~~~~~~~~~~~i~ssP---~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 136 ---FGNNDQVPPGYTMTGAP---TI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred ---ecCCCCcCcceEecCCC---EE--ECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCCC
Confidence 111111 00122211 11 135666654 36789999999988 5555443211
Q ss_pred ---------CCeEEEEEecCCCCEEEEEeCCC------------------eEEEEECCCCCeeeEeecCCCCCCCC----
Q 000697 1180 ---------CSISALTASQVHGGQLAAGFVDG------------------SVRLYDVRTPDMLVCSTRPHTQQVER---- 1228 (1348)
Q Consensus 1180 ---------~~VtsL~~~s~dg~~LvsGs~DG------------------~VrvwDlr~~~~~v~~~~~~~~h~~~---- 1228 (1348)
..|.+-....+.+..++.++.|+ .|.-+|..+++..- ..+. ..|..+
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W-~~~~-~~~~~~~~~~ 284 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW-FYQT-TPHDLWDYDG 284 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE-EeeC-CCCCCccccc
Confidence 11111112334567788887776 79999999998433 2211 111110
Q ss_pred eEEEEEec---CCCCC---EEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE-------------
Q 000697 1229 VVGISFQP---GLDPA---KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG------------- 1289 (1348)
Q Consensus 1229 I~sl~~sp---~~~g~---~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg------------- 1289 (1348)
.....+.+ . ++. .++.++.+|.+...|.+++ +.+-..... ...++.+| +.+++.+
T Consensus 285 ~s~p~~~~~~~~-~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~ 358 (488)
T cd00216 285 PNQPSLADIKPK-DGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKK 358 (488)
T ss_pred CCCCeEEecccc-CCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC-ceEEEccccccccCcccccC
Confidence 00011110 1 132 6788889999999999998 555444321 11223333 2222211
Q ss_pred ----eCCCcEEEEE-cCCceEEEEeccCCcc-cccccCCe--EEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1290 ----SAKQLIKVFS-LEGEQLGTIRYHHPSF-MAQKIGSV--NCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1290 ----S~Dg~I~Vwd-~~g~~l~~i~~~h~~f-~~~~~~~V--tslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..+|.+.-.| .+|+.+-+... .... ......+. ..+. -.+..|++++.||.|+.+|
T Consensus 359 ~~~~~~~G~l~AlD~~tG~~~W~~~~-~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 359 RCKKPGKGGLAALDPKTGKVVWEKRE-GTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CCCCCCceEEEEEeCCCCcEeeEeeC-CccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 1346677777 45666655543 1000 00000011 1122 2456777777888887654
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.17 Score=55.76 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=92.8
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeec
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
..+++.|+..+.+.--|.++|+....-.-. .+|.+-+.. -|++++.|...|.+.+-+..+ |..-. .+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~w--~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQIW--NFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhhee--eeee
Confidence 447888999999999999999887653322 245554442 467899999999999999876 32211 1111
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrv 1206 (1348)
. ..|.+ ......+++.+..|+.|+..+..|.++.. ++...+..... ..--...+....+.++...|.|.-
T Consensus 92 ~----~~vk~---~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 92 L----ETVKV---RAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred h----hhhcc---ceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCce--eccceecCCCceEEEEeccceEEE
Confidence 1 22222 12334579999999999999999999998 88887654332 111123343334555555666655
Q ss_pred EECCCC
Q 000697 1207 YDVRTP 1212 (1348)
Q Consensus 1207 wDlr~~ 1212 (1348)
-..+..
T Consensus 162 vt~~~~ 167 (354)
T KOG4649|consen 162 VTKNPY 167 (354)
T ss_pred EccCCC
Confidence 555443
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.037 Score=68.27 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
...|.--+++..+++++.|++.|.+.+|+-..++....-.... ..++++..+ +.+..+++.|+..|.|.|+-+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~- 107 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNK- 107 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc---cceEEEEEe-cchhHhhhhhcCCceEEeehhhc-
Confidence 3456666788889999999999999999988665433222122 355555544 67888899999999999998865
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCc---eeeeeecCCCCCCeEEEEEecCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~---~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.....+.--...-..|...|++ ++|++++..+++|...|+|..-.+.... ...+.+-. .+++|..+... +
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTa----l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~--q 180 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTA----LEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL--Q 180 (726)
T ss_pred cCCCcceeeccccccCCceEEE----EEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc--c
Confidence 2222222111111235666776 9999999999999999999888776621 01222222 23447777333 3
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 000697 1192 GGQLAAGFVDGSVRLYDVRT 1211 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~ 1211 (1348)
+.+|++...- -.+++...
T Consensus 181 ~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 181 SYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred ceehHhhhhh--hheeecch
Confidence 4555544432 23455543
No 347
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.22 E-value=0.0013 Score=61.61 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=64.1
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcC
Q 000697 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1348)
Q Consensus 590 ~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1348)
+.+++.|.+ +++|.+|..++.+||++... .+...|..+++|++|.||.+++.+||.+=
T Consensus 2 ~~L~~~l~~------~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 2 PALLQLLQN------DPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHT------SSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 467777732 89999999999999977532 23457888999999999999999999872
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHhhhc-cCCChhhHHHHHHHHH
Q 000697 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVV-SDGSPLVRAEVAVALA 717 (1348)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~-~D~sp~VR~e~~~~ls 717 (1348)
.......|..+. +|....||.+++.+|+
T Consensus 60 --------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 112234455544 4667889999998875
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.20 E-value=0.17 Score=58.94 Aligned_cols=262 Identities=15% Similarity=0.178 Sum_probs=155.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----------CCCeEEEEeccCCCCceeEEeeeec
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----------~DG~IrIWdl~~~~~~~~lvs~~~~ 1126 (1348)
+.+.|+|.++++.+..+...- .-.+.. +++++.+++++ ..-.|.+||..+..-..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----- 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----- 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----
Confidence 479999999999888877644 233455 78999888754 23469999997743333333
Q ss_pred ccCC-CC-cccccceEEEEecCCCeEEEEE--CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCC
Q 000697 1127 IQGH-KP-GVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1127 l~~h-~~-~V~si~~~v~ws~~~~~Ll~gg--~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
+... .. .+.... ....+.+++++++.- -...|-|.|+...+ .+.++... + ...+ ++..++-|.+-|.||
T Consensus 85 iP~k~R~~~~~~~~-~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~P--G-C~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 85 IPPKPRAQVVPYKN-MFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTP--G-CWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp ETTS-B--BS--GG-GEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGT--S-EEEE--EEEETTEEEEEETTS
T ss_pred cCCcchheeccccc-ceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCC--C-EEEE--EecCCCceEEEecCC
Confidence 2221 11 111111 267788888888873 45679999999998 78777652 2 2233 344456788999999
Q ss_pred eEEEEECCC-CCeeeEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC-cceEEEecC---------
Q 000697 1203 SVRLYDVRT-PDMLVCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH--------- 1270 (1348)
Q Consensus 1203 ~VrvwDlr~-~~~~v~~~~~~~~h~~~I~-sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~-~~v~t~~~h--------- 1270 (1348)
++.-..+.. ++...+..+.+.....++. .-.+... +..++--+.+|.|+--|+.... +....+..-
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 999998883 4422221112211122232 3334444 5555557889999998888653 122223211
Q ss_pred -CCCeEEEEEeCCCCEEEEE---eC-----CC--cEEEEE-cCCceEEEEeccCCcccccccCCeEEEEEeCCCC-EEEE
Q 000697 1271 -RGSLSALAVHRHAPIIASG---SA-----KQ--LIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAA 1337 (1348)
Q Consensus 1271 -~~~VtsLa~spdg~~Lasg---S~-----Dg--~I~Vwd-~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~-~Lat 1337 (1348)
.+.-.-+++|+....|.+- +. |+ .|-++| .+++.+.++.. . ..+.+++.+.+.+ +|++
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~--------~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-E--------HPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-E--------EEESEEEEESSSS-EEEE
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-C--------CccceEEEccCCCcEEEE
Confidence 1233457888765544332 11 22 366667 56788888875 1 3577999998875 6655
Q ss_pred EE-CCCeEEEcC
Q 000697 1338 GS-ADACVSIHS 1348 (1348)
Q Consensus 1338 gs-~Dg~I~IWd 1348 (1348)
.+ .++.+.|||
T Consensus 307 ~~~~~~~l~v~D 318 (342)
T PF06433_consen 307 LSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEe
Confidence 54 478999986
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.18 E-value=0.24 Score=60.70 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1225 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1225 h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
..+.|.+++++|+ ...++.|+.||.|.+||...+ +.......-..+.++|||+|.++++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPS--EDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcc--cceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4578999999999 999999999999999998855 22232344567899999999999999999999999953
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.18 E-value=0.082 Score=64.82 Aligned_cols=216 Identities=16% Similarity=0.140 Sum_probs=115.9
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEE
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV 1161 (1348)
....+.+ +|+|+++++ +.||...|+.... .+-. ....+....|.. .+.+++-...+.|.|
T Consensus 34 ~p~~ls~--npngr~v~V-~g~geY~iyt~~~----~r~k------------~~G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 34 YPQSLSH--NPNGRFVLV-CGDGEYEIYTALA----WRNK------------AFGSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp --SEEEE---TTSSEEEE-EETTEEEEEETTT----TEEE------------EEEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCeeEEE--CCCCCEEEE-EcCCEEEEEEccC----Cccc------------ccCceeEEEEec-CccEEEEECCCeEEE
Confidence 4678888 789999998 5567777776322 1101 112223478987 566777777888999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000697 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1348)
Q Consensus 1162 WDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~ 1241 (1348)
+.--++. ....+... ..+..| +. |.+|...+. +.|.+||..+++ .++.+.. ..|..+.|+++ |.
T Consensus 94 ~kn~~~~-~~k~i~~~--~~~~~I-f~---G~LL~~~~~-~~i~~yDw~~~~-~i~~i~v-----~~vk~V~Ws~~--g~ 157 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLP--FSVEKI-FG---GNLLGVKSS-DFICFYDWETGK-LIRRIDV-----SAVKYVIWSDD--GE 157 (443)
T ss_dssp EETTEE--TT-----S--S-EEEE-E----SSSEEEEET-TEEEEE-TTT---EEEEESS------E-EEEEE-TT--SS
T ss_pred EEcCccc-cceEEcCC--cccceE-Ec---CcEEEEECC-CCEEEEEhhHcc-eeeEEec-----CCCcEEEEECC--CC
Confidence 7433333 23344432 126667 33 777766654 489999999998 6666632 34899999998 99
Q ss_pred EEEEEECCCcEEEEEcCCC----------CcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEecc
Q 000697 1242 KIVSASQAGDIQFLDIRNH----------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYH 1311 (1348)
Q Consensus 1242 ~LaSgs~DG~I~IWDlr~~----------~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~ 1311 (1348)
+++..+.+ .+.|++.... ...+..+..-...|.+..|..+ .++-.+.. +++- +-+.....+..
T Consensus 158 ~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~- 230 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH- 230 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-
T ss_pred EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE-
Confidence 99888765 6777775521 0144444443567888899876 44433333 6665 33344444443
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
-+ .++.=+...+....+.....|+.|..+
T Consensus 231 ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 231 LD-------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -S-------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred cC-------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 22 456667778877788888888777654
No 351
>PTZ00429 beta-adaptin; Provisional
Probab=97.12 E-value=0.02 Score=73.97 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=96.5
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhH
Q 000697 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1348)
Q Consensus 502 ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~ 581 (1348)
.||.|+|+++++..|+|.|.-.-|.......|. .. ++ ..+.|.+=|++++ |..|+++.=.|+.|- .
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe-la-lL---aINtl~KDl~d~N--p~IRaLALRtLs~Ir-------~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE-KA-LL---AVNTFLQDTTNSS--PVVRALAVRTMMCIR-------V 134 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH-HH-HH---HHHHHHHHcCCCC--HHHHHHHHHHHHcCC-------c
Confidence 499999999999999998844444444332322 11 11 1345566565554 688888877776663 1
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHH
Q 000697 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1348)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1348)
.-+-..+...+.+.|. |++|.||..+++|+.+++..+++ ...+.+..+.|..+|+|.+|+|.+.++.+|.
T Consensus 135 ~~i~e~l~~~lkk~L~-------D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVA-------DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred HHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 1122233444455566 88999999999999999987664 2234456667888999999999999999999
Q ss_pred hhcc
Q 000697 662 TLLD 665 (1348)
Q Consensus 662 ~~i~ 665 (1348)
.+..
T Consensus 205 eI~~ 208 (746)
T PTZ00429 205 EVND 208 (746)
T ss_pred HHHH
Confidence 8863
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.07 E-value=0.11 Score=63.00 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=130.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-------------------------EeeCC---------------
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN-------------------------SFDNH--------------- 1076 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~-------------------------~~~~h--------------- 1076 (1348)
.|+.+.|.++..-|++|...|.|.||.+...+.-. .+..-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875432111 00000
Q ss_pred CCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccC------CCCcccccceEE-EEecCC--
Q 000697 1077 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVVV-DWQQQS-- 1147 (1348)
Q Consensus 1077 ~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~------h~~~V~si~~~v-~ws~~~-- 1147 (1348)
+...+.|++++. .|-.+++.|..+|.+.|.|++. +.++.. ..+.. ....++++.+.+ .+..|+
T Consensus 83 ~~~~g~vtal~~---S~iGFvaigy~~G~l~viD~RG----PavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKN---SDIGFVAIGYESGSLVVIDLRG----PAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTT----TEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEec---CCCcEEEEEecCCcEEEEECCC----CeEEee-ccccccccccccccCeeEEEEEEEecCCCccc
Confidence 001368999987 3778999999999999999944 222211 12222 122233322211 122222
Q ss_pred -CeEEEEECCCeEEEEECCC---Cc---eeeeeecCCCCCCeEEEEEecCC-C-------------------CEEEEEeC
Q 000697 1148 -GYLYASGEVSSIMLWDLEK---EQ---QMVNPIPSSSDCSISALTASQVH-G-------------------GQLAAGFV 1200 (1348)
Q Consensus 1148 -~~Ll~gg~Dg~IrVWDl~t---~~---~~v~~l~~~~~~~VtsL~~~s~d-g-------------------~~LvsGs~ 1200 (1348)
-.+++|.+.|.+.+|.+.- +. +..... ...+.+|..+..++.+ | +-++....
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688889999999997652 11 011111 1233446666555322 1 13444455
Q ss_pred CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec---CCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC----CC
Q 000697 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP---GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR----GS 1273 (1348)
Q Consensus 1201 DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp---~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~----~~ 1273 (1348)
+..+|++..-+.+...+.++. ......+.+-+ ...+..|++-..+|.|++|.+... +.+....... ..
T Consensus 234 e~~irv~~~~~~k~~~K~~~~----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDD----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRR 308 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH
T ss_pred ccceEEEeCCCCcccceeecc----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCcccccc
Confidence 788999999887755554421 12223334421 002778999999999999999987 5666665432 23
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1274 LSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1274 VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
+....++++|.+++-.+. ..+.++.
T Consensus 309 ~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 309 LSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp HTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred ccccEECCCCCEEEEeCc-ccEEEEE
Confidence 445677888887766543 2344443
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.02 E-value=0.16 Score=60.89 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=140.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC------C--------CCCeEEEEEEeeCCCCEEEEEe
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF------P--------DKGISKLCLVNELDVSLLLVAS 1101 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~------~--------~~~ItsL~f~ns~d~~~L~tgs 1101 (1348)
..+....|+|+|+.++... ++.|.+++..+++..+.-..... + -+.-.++-| +||+++|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEE
Confidence 5688999999999999887 78999999887744332111110 0 012345666 89999888765
Q ss_pred -CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeec---C
Q 000697 1102 -CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIP---S 1176 (1348)
Q Consensus 1102 -~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v-~~l~---~ 1176 (1348)
++..|+.+.+........ .-..+.. +.+-..|.... .-.+.|+|+.+++ .. .... .
T Consensus 120 ~d~~~v~~~~~~~~~~~~~----------~yp~~~~----~~YPk~G~~np----~v~l~v~~~~~~~-~~~~~~~~~~~ 180 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS----------QYPEVES----IRYPKAGDPNP----RVSLFVVDLASGK-TTELDPPNSLN 180 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE----------SS-EEEE----EE--BTTS-------EEEEEEEESSSTC-CCEE---HHHH
T ss_pred ECCcCCceEEeeccCCccc----------cCCcccc----cccCCCCCcCC----ceEEEEEECCCCc-EEEeeeccccC
Confidence 345565555422111100 0001111 22211121111 1136678888776 32 1222 1
Q ss_pred CCCCCeEEEEEecCCCCEEEEE--eCC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe-cCCCCCEEEEEECCC
Q 000697 1177 SSDCSISALTASQVHGGQLAAG--FVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ-PGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1177 ~~~~~VtsL~~~s~dg~~LvsG--s~D---G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s-p~~~g~~LaSgs~DG 1250 (1348)
..+..+..+. +.++++.|+.. ..+ -.+.++|..++...........+--..-....+. ++ +..++.....+|
T Consensus 181 ~~~~yl~~v~-W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~-~~~~l~~s~~~G 258 (353)
T PF00930_consen 181 PQDYYLTRVG-WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD-GNEFLWISERDG 258 (353)
T ss_dssp TSSEEEEEEE-EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT-SSEEEEEEETTS
T ss_pred CCccCcccce-ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC-CCEEEEEEEcCC
Confidence 2244477774 45566634333 222 2467778877653322221222111222355554 55 466666777888
Q ss_pred cEEEEEcCCCCcceEEEecCCCCeEE-EEEeCCCCE-EEEEeCC----CcEEEEEcC-CceEEEEeccCCcccccccCCe
Q 000697 1251 DIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRHAPI-IASGSAK----QLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1251 ~I~IWDlr~~~~~v~t~~~h~~~Vts-La~spdg~~-LasgS~D----g~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
.-+||-+...+...+.+....-.|+. +.+++++.. ..++..+ ..+..-+++ +..+..+.. .. +.-
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~-------~~~ 330 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-ED-------GDH 330 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-TS-------STT
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CC-------CCc
Confidence 76666555433445555555666755 678887664 4455442 245455577 777777766 33 112
Q ss_pred EEEEEeCCCCEEEEEE
Q 000697 1324 NCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1324 tslafspdg~~Latgs 1339 (1348)
..+.|+|++++++-..
T Consensus 331 ~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred eEEEECCCCCEEEEEE
Confidence 6899999999877554
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.01 E-value=0.25 Score=61.82 Aligned_cols=237 Identities=14% Similarity=0.170 Sum_probs=132.5
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC--CCCeE-EEEEEeeCCCCEEEEEe---------CCCeEEEEeccCCC
Q 000697 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFP--DKGIS-KLCLVNELDVSLLLVAS---------CNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~--~~~It-sL~f~ns~d~~~L~tgs---------~DG~IrIWdl~~~~ 1115 (1348)
..+++++.+|.|.-+|.++|+.+..+...... ...+. +..+ .+..++.++ .+|.|..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVET-- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCC--
Confidence 67888888999999999999999887755410 00011 2222 224555554 357788888766
Q ss_pred CceeEEeeeecccC----------------C-CCcccccceEEEEecCCCeEEEEECCC------------------eEE
Q 000697 1116 DKQKLVTAFSSIQG----------------H-KPGVRCSNVVVDWQQQSGYLYASGEVS------------------SIM 1160 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~----------------h-~~~V~si~~~v~ws~~~~~Ll~gg~Dg------------------~Ir 1160 (1348)
++..-.. ..... + ...+.+ .....+.++.+++++.++ .|.
T Consensus 185 G~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vw~---~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 185 GKLLWRF--YTTEPDPNAFPTWGPDRQMWGPGGGTSWA---SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred CceeeEe--eccCCCcCCCCCCCCCcceecCCCCCccC---CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 4333221 11000 0 011111 134445578888887554 799
Q ss_pred EEECCCCceeeeeecCCCCC-----CeE--EEEE-ecCCCC---EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000697 1161 LWDLEKEQQMVNPIPSSSDC-----SIS--ALTA-SQVHGG---QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1348)
Q Consensus 1161 VWDl~t~~~~v~~l~~~~~~-----~Vt--sL~~-~s~dg~---~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I 1229 (1348)
-+|..+++ .+-.++..... ... .+.- ...++. .+++++.+|.+..+|.++++..-. .+.. .
T Consensus 260 Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~-~~~~------~ 331 (488)
T cd00216 260 ALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA-RPEV------E 331 (488)
T ss_pred EEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE-eEee------c
Confidence 99999998 66554421110 000 1100 012333 678899999999999999984332 2110 0
Q ss_pred EEEEEecCCCCCEEEEE------------------ECCCcEEEEEcCCCCcceEEEecCC--------CCe--EEEEEeC
Q 000697 1230 VGISFQPGLDPAKIVSA------------------SQAGDIQFLDIRNHKDAYLTIDAHR--------GSL--SALAVHR 1281 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSg------------------s~DG~I~IWDlr~~~~~v~t~~~h~--------~~V--tsLa~sp 1281 (1348)
..+..+|+ .++.+ ..+|.+.-.|..++ +.+-+..... ... ..+..
T Consensus 332 ~~~~~~~~----~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~-- 404 (488)
T cd00216 332 QPMAYDPG----LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT-- 404 (488)
T ss_pred cccccCCc----eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe--
Confidence 11122221 22221 23567777888777 4443333220 111 11222
Q ss_pred CCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1282 HAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1282 dg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
.+.+++.|+.||.|+.+| .+|+.+-+.+.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456888889999999999 67888887765
No 355
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.01 E-value=0.02 Score=71.73 Aligned_cols=255 Identities=16% Similarity=0.184 Sum_probs=175.0
Q ss_pred hHHHhcCCCCCCCCCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHH
Q 000697 446 FEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF 523 (1348)
Q Consensus 446 fe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rlral~--ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~F 523 (1348)
++.+|+.......-|...|++.+.|.++...+|.+. .|+|.+.-..-++.++.+.++++.++..|.++..+....++=
T Consensus 62 L~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~ 141 (503)
T PF10508_consen 62 LKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIK 141 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555333222234567778888888888877775 467888777777888889999999999999998888888999
Q ss_pred HHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCC
Q 000697 524 IWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603 (1348)
Q Consensus 524 Iwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~ 603 (1348)
++.++....+.. ..++..++...+.+.+...+.....|... ++..+...-+..-..|.+.|+++.++..|.
T Consensus 142 ~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e--l~v~i~~~S~~~~~~~~~sgll~~ll~eL~------ 212 (503)
T PF10508_consen 142 ALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYE--LLVEIASHSPEAAEAVVNSGLLDLLLKELD------ 212 (503)
T ss_pred HHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHH--HHHHHHhcCHHHHHHHHhccHHHHHHHHhc------
Confidence 999999865544 45778888777777776533223444333 466677888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHh--hcccCcCCCCCCCCCCCCC
Q 000697 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT--LLDIGFDSCRDGVEGDEEC 681 (1348)
Q Consensus 604 ~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~--~i~~~~~~~~~~~~~~~~~ 681 (1348)
+.+.+|+.-++=+|+.|.. .+++-..-.+.++..+|..++.+..-.-|-..++-.|. |.+.-. ..
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la-----------~~ 279 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA-----------RV 279 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH-----------hc
Confidence 7899999999999999999 56666666888999999999854422214444444444 332210 00
Q ss_pred chHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 682 DDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 682 ~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
...+....=..+...+..+.....+..+.-++-.++.+...
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 11122211223344555666667777776666666655433
No 356
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.97 E-value=0.0011 Score=56.51 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 608 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 608 p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
|.||..++.+||.+.+..++.-.. .-..+...|..+|+|+++.||.+++.|||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987665544332 4455566888999999999999999999974
No 357
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.027 Score=65.14 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=98.5
Q ss_pred ccCCCCcccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVR 1205 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~-~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vr 1205 (1348)
+.++...|++ ++|+|... .+..++.+..|+|.|+++.. ++..+..+ ..+++++|.-.+.+++++|..+|.|.
T Consensus 189 lp~~g~~Ird----lafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 189 LPGEGSFIRD----LAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccccchhhhh----hccCccccceeeeeccCceEEEEecccce-eeeheecc--CCceeeeeccCCcceeEEeccCceEE
Confidence 5677778888 78888765 67777899999999999998 88888876 34899977777788999999999999
Q ss_pred EEECCCCCeeeEeecCCCCCCCCeEEEEEecC---C-CCCEEEEEECCCcEEEEEcCCCCc-ceEEEe-cCCCCeEEEEE
Q 000697 1206 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---L-DPAKIVSASQAGDIQFLDIRNHKD-AYLTID-AHRGSLSALAV 1279 (1348)
Q Consensus 1206 vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~---~-~g~~LaSgs~DG~I~IWDlr~~~~-~v~t~~-~h~~~VtsLa~ 1279 (1348)
+||+|..+.....+... -...+|..++.-+. + .|..++..+. ...+|++..... ...+.+ +..+...+++.
T Consensus 262 vyD~R~~~~~~~e~~a~-~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVAN-VTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhh-hccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99999877554433221 11234444443221 0 1444554443 356777654321 111111 22455566666
Q ss_pred eCCCC-EEEEE
Q 000697 1280 HRHAP-IIASG 1289 (1348)
Q Consensus 1280 spdg~-~Lasg 1289 (1348)
++-.+ +|++.
T Consensus 339 ~~~snh~l~ty 349 (463)
T KOG1645|consen 339 HGVSNHLLLTY 349 (463)
T ss_pred cCccceEEEEe
Confidence 66444 44444
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.93 E-value=0.19 Score=59.34 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=128.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEeC----------CCeEEEEeccCC---CCce
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASC----------NGNIRIWKDYDQ---KDKQ 1118 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~----------DG~IrIWdl~~~---~~~~ 1118 (1348)
..|++.|..+.+.+.++.-.. ...+++++...-.+ ..++++|+. .|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 468899988888777665433 14677776643232 568887753 289999999763 1123
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsG 1198 (1348)
+++. -....++|.++ ..+ ++.++++. .+.|.+|++...+..+..-..+....++++... ++++++|
T Consensus 80 ~~i~----~~~~~g~V~ai---~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 80 KLIH----STEVKGPVTAI---CSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEE----EEEESS-EEEE---EEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEE
T ss_pred EEEE----EEeecCcceEh---hhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEE
Confidence 3331 12234556552 223 56655554 578999998876612222122223358888544 6799999
Q ss_pred eCCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC------Cc-ce-EEEec
Q 000697 1199 FVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH------KD-AY-LTIDA 1269 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~-~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~------~~-~v-~t~~~ 1269 (1348)
.....|.++..+.... ....-+. ....+++++.+-++ ++.++.+..+|.+.++..... +. .+ ....-
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f 221 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVD--EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF 221 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-S--SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE
T ss_pred EcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecC--CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE
Confidence 9999999885554322 2222211 22467999999877 569999999999999987631 11 12 12222
Q ss_pred C-CCCeEEE---EEeC--CC------CEEEEEeCCCcEEEE
Q 000697 1270 H-RGSLSAL---AVHR--HA------PIIASGSAKQLIKVF 1298 (1348)
Q Consensus 1270 h-~~~VtsL---a~sp--dg------~~LasgS~Dg~I~Vw 1298 (1348)
| ...|+++ .+.| .+ ..++.++.+|.|.+.
T Consensus 222 ~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 222 HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 2 4467777 4444 12 247778888888743
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.93 E-value=0.13 Score=64.21 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=143.2
Q ss_pred EEEcCCCCEEEE-EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC----CeEEEEeccCCC
Q 000697 1041 ALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GNIRIWKDYDQK 1115 (1348)
Q Consensus 1041 l~fspdg~~Lat-gs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~IrIWdl~~~~ 1115 (1348)
+=+.|||+.+.. .-..+.+.+.|.++.+...++.... ...-+.+ +++++++++.+.+ +++..-+..+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~--spdGk~afvTsyNsE~G~tl~em~a~e-- 269 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDT--DYDGKYAFSTCYNSEEGVTLAEMMAAE-- 269 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceE--CCCCCEEEEeccCcccCcceeeecccc--
Confidence 345677775543 3356778888988877777666543 3345566 6789988887632 2232222211
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC-----CceeeeeecCCCCCCeEEEEEecC
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-----EQQMVNPIPSSSDCSISALTASQV 1190 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t-----~~~~v~~l~~~~~~~VtsL~~~s~ 1190 (1348)
.....+-.+.. + -++.+++++..+ .++.|.+.|..+ .. .+..+..... ...+ ..+|
T Consensus 270 ~d~~vvfni~~-------i------ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGKs--PHGV-~vSP 330 (635)
T PRK02888 270 RDWVVVFNIAR-------I------EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPKN--PHGV-NTSP 330 (635)
T ss_pred CceEEEEchHH-------H------HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCCC--ccce-EECC
Confidence 11111100000 0 122346666665 367899999998 34 6666665433 4667 6789
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCCe-----------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1191 HGGQLAAGF-VDGSVRLYDVRTPDM-----------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1191 dg~~LvsGs-~DG~VrvwDlr~~~~-----------~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
+|+++++++ .+++|.|+|+.+.+. ++...+. ...-...+|.++ |+.+.|-..|..|..||+.
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~--G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGR--GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCC--CCEEEeEeecceeEEEehH
Confidence 999877655 489999999987552 1211111 123446678777 8889999999999999987
Q ss_pred CC---------CcceEEEecCCCCe-----EEEEEeCCCCEEEEEe---CCCc----------EEEEEcCCceEEEEecc
Q 000697 1259 NH---------KDAYLTIDAHRGSL-----SALAVHRHAPIIASGS---AKQL----------IKVFSLEGEQLGTIRYH 1311 (1348)
Q Consensus 1259 ~~---------~~~v~t~~~h~~~V-----tsLa~spdg~~LasgS---~Dg~----------I~Vwd~~g~~l~~i~~~ 1311 (1348)
.. ...+..+..|-.+- .+=.-.++|++|++.. .|+. -.+.|++|+.+.-+..
T Consensus 405 ~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d- 483 (635)
T PRK02888 405 AAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD- 483 (635)
T ss_pred HHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec-
Confidence 51 02334444343221 1122367888888864 3432 3467788887776655
Q ss_pred CCcc
Q 000697 1312 HPSF 1315 (1348)
Q Consensus 1312 h~~f 1315 (1348)
+..|
T Consensus 484 ~p~~ 487 (635)
T PRK02888 484 GPTF 487 (635)
T ss_pred CCCC
Confidence 4433
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.90 E-value=0.14 Score=62.75 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=110.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..+..+.++|.|+++++++ +|...|+......... + +.-...+| .. .+.+++-...+.|.|++.....
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-~-------G~g~~~vw--~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-F-------GSGLSFVW--SS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-E-------EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-c-------CceeEEEE--ec-CccEEEEECCCeEEEEEcCccc
Confidence 4588999999999999966 8888888844333222 1 12235667 44 4557777778899997553311
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~L 1195 (1348)
.... +.- ...+.. + |. |..|.+. .++.|.+||+.+++ .+..+... +|..+ .|+++|+++
T Consensus 101 ~~k~-------i~~-~~~~~~----I-f~--G~LL~~~-~~~~i~~yDw~~~~-~i~~i~v~---~vk~V-~Ws~~g~~v 159 (443)
T PF04053_consen 101 VVKS-------IKL-PFSVEK----I-FG--GNLLGVK-SSDFICFYDWETGK-LIRRIDVS---AVKYV-IWSDDGELV 159 (443)
T ss_dssp TT-------------SS-EEE----E-E---SSSEEEE-ETTEEEEE-TTT---EEEEESS----E-EEE-EE-TTSSEE
T ss_pred cceE-------EcC-Ccccce----E-Ec--CcEEEEE-CCCCEEEEEhhHcc-eeeEEecC---CCcEE-EEECCCCEE
Confidence 1001 110 011222 1 11 4444444 45589999999999 89998853 27888 788899999
Q ss_pred EEEeCCCeEEEEECCCC----------CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceE
Q 000697 1196 AAGFVDGSVRLYDVRTP----------DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1196 vsGs~DG~VrvwDlr~~----------~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~ 1265 (1348)
+..+.+ .+.+++.... +........ -...|.+..|.. +.++-.+.. .++. +..+ ...
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~----d~fiYtT~~-~lkY--l~~G--e~~ 226 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVE----DCFIYTTSN-HLKY--LVNG--ETG 226 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEET----TEEEEE-TT-EEEE--EETT--EEE
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEc----CEEEEEcCC-eEEE--EEcC--Ccc
Confidence 988765 6777776543 001111111 125677777763 344444444 6665 3322 222
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1266 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1266 t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
++..-..++.=+.+.+....+.....|+.|..+.+
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 33323445666666666566666666766666654
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.84 E-value=0.23 Score=56.17 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1036 ~~I~sl~fspdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
..+..++|+|+.+ ++++.+..+.|..++.+ |+.++++.-.. .+...+|++. .++.++++.-.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g--~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG--FGDYEGITYL--GNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS---SSEEEEEE---STTEEEEEETTTTEEEEEEE---
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC--CCCceeEEEE--CCCEEEEEEcCCCcEEEEEEecc
Confidence 4599999999866 66667778888888864 88888876443 1468899994 56666666656899999988542
Q ss_pred CCceeE--Eeeee--cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCC---Cceeee--e---ec--CCCCC
Q 000697 1115 KDKQKL--VTAFS--SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---EQQMVN--P---IP--SSSDC 1180 (1348)
Q Consensus 1115 ~~~~~l--vs~~~--~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t---~~~~v~--~---l~--~~~~~ 1180 (1348)
...... ...+. ....+.....+ ++|++.++.++++-...-..+|.+.. .. .+. . +. ...-.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EG----la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEG----LAYDPKTNRLFVAKERKPKRLYEVNGFPGGF-DLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EE----EEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEE----EEEcCCCCEEEEEeCCCChhhEEEccccCcc-ceeeccccccccccceec
Confidence 222111 11111 11123445566 99999999999987666666666553 11 111 1 11 11122
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCC------CCCeEEEEEecCCCCCEEEEEECCCcE
Q 000697 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ------VERVVGISFQPGLDPAKIVSASQAGDI 1252 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h------~~~I~sl~~sp~~~g~~LaSgs~DG~I 1252 (1348)
.+.++++.+..+++++-...+..|..+| +.++ .+..+.-..+. -..--.|+|.++ |+..+++ +-+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvs-EpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD--GNLYIVS-EPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEE-TTTEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC--CCEEEEc-CCceE
Confidence 3778877777788888888899999999 4444 33333222111 135678999988 7665554 43333
No 362
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.81 E-value=0.081 Score=64.59 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=66.7
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1159 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1159 IrVWDl~t~~-~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
-++|+..+.+ +++........+.|.+. ..+++...++.|+.||+|.+||...+..... ...-..+.++|+|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICC-ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEE-ecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCC
Confidence 3456655443 12222222234447887 7789999999999999999999987642211 11245789999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 000697 1238 LDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1238 ~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
|.++++|+..|.+.+||+.-.
T Consensus 311 --gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998744
No 363
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.81 E-value=0.0038 Score=67.10 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHH
Q 000697 607 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 686 (1348)
Q Consensus 607 ~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~ 686 (1348)
+|.+|.-++++||-|+-.++.. -+.....+...|+|++|.||+.++..|++++...-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~-----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------------------ 57 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL-----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------------------ 57 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH-----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------------------
Confidence 4899999999999999887652 23344578899999999999999999999994321
Q ss_pred HHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 687 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 687 ~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
+..+..+...++..+.|.++.||..+..++..+....
T Consensus 58 ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 58 IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 1222333344556679999999999999999988873
No 364
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=96.79 E-value=0.00044 Score=78.04 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhccC-CCceEEEEEcCCCCCCCCC-CCeEEEecCCCC
Q 000697 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA-KGERVLFHYNGHGVPKPTA-NGEIWLFNKSYT 219 (1348)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~-~~~r~lfhy~ghg~p~pt~-~g~i~~~~~~~~ 219 (1348)
+.+=.+.+.+.| +.+ .+.. ... ...|||.+++++.+..+-+.+ +.+.++|||-|||...+.. .+++..++..
T Consensus 20 ~~~D~~~~~~~L-~~~-gf~~-~~~-l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~-- 93 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKL-GFDV-ENI-LIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGY-- 93 (248)
T ss_dssp HHHHHHHHHHHH-HHT-TEEE-EEE-EEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSE--
T ss_pred HHHHHHHHHHHH-HHc-CCce-eec-cccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccccCCccCcccccccce--
Confidence 344455666666 222 1111 111 356999999999988886555 6789999999999775432 3444444322
Q ss_pred eeeecc----hHhhhhhcC------CCeEEEEeCCchhhHHHHHHhhccCC-----------------CCCCCCCCcceE
Q 000697 220 QYIPLP----ISDLDSWLK------TPSIYVFDCSAAGMIVNAFIELHDWG-----------------ASNYSGSTRDCI 272 (1348)
Q Consensus 220 ~y~p~~----~~~l~~~~~------~p~~~v~dc~~ag~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 272 (1348)
.+|+. +.+.+..+. .|-++|+||..+|.+........... .........+.+
T Consensus 94 -~~~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (248)
T PF00656_consen 94 -LLPLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFI 172 (248)
T ss_dssp -EEEHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEE
T ss_pred -eeecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcE
Confidence 24654 344333332 34599999999999877653321110 011123566889
Q ss_pred EEEecCCcCCCCCCCCCCchhhhhcccch
Q 000697 273 LLAACEAHETLPQSEEFPADVFTSCLTTP 301 (1348)
Q Consensus 273 ~~~ac~~~e~lp~~~~lp~D~ftscl~tP 301 (1348)
+++||..+|.---.+....=+||-.|..=
T Consensus 173 ~~~as~~~~~s~e~~~~~~g~ft~~L~~~ 201 (248)
T PF00656_consen 173 VLSASRPGQTSYEDSPGSGGLFTYALLEA 201 (248)
T ss_dssp EEESSSTTBCEEEECTTTEEHHHHHHHHH
T ss_pred EEEeccccceeecccCccCHHHHHHHHHH
Confidence 99999999988877778888999888543
No 365
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.033 Score=63.64 Aligned_cols=245 Identities=17% Similarity=0.190 Sum_probs=162.1
Q ss_pred CCchhhHHHHhhc--hhhHHHHHHHHHHHhcCCHHHHHHHHhcC--chhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000697 460 PEQLPIVLQVLLS--QCHRFRALVLLGRFLDMGPWAVDLALSVG--IFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 460 p~~lP~vLq~LlS--~~~rlral~ll~~Fld~~~wAv~lal~~g--ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
.|-+|++.-+|-| .+-+.++..-++. |....-|+.-....+ ..|-.+.|..++.+..|-.+.--+ ++++-|-.-
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisn-IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL-rnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISN-IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL-RNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhh-hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH-hhhcccchh
Confidence 3778888887776 3444555544333 223334444444455 788889999888776664433333 788889999
Q ss_pred hhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000697 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~ 615 (1348)
|.+.+..|+....++.|+++.. |+.-+ ..||+--| .-+|-.-..-...++..-+..+|.. ..+-|....+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~-plila-sVaCIrni-sihplNe~lI~dagfl~pLVrlL~~------~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMG-PLILA-SVACIRNI-SIHPLNEVLIADAGFLRPLVRLLRA------GDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcch-hHHHH-HHHHHhhc-ccccCcccceecccchhHHHHHHhc------CCchhhhhhHH
Confidence 9999999999999999988765 33322 22333111 1233333333466777777777763 23344554444
Q ss_pred HHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 000697 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1348)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1348)
=.|-.|-..++..+..-.+.++..++..|+.|+.-+||.++--+++.+.-. +.++....+..++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~---------------d~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN---------------DNDKEALLDSGIIP 420 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc---------------cccHHHHhhcCCcc
Confidence 444444455666666668889999999999999999999998888888622 12223445777788
Q ss_pred HHhhhccCCChhhHHHHHHHHHHHHHhc--chhHHHH
Q 000697 696 SLLTVVSDGSPLVRAEVAVALARFAFGH--KQHLKSI 730 (1348)
Q Consensus 696 ~ll~~~~D~sp~VR~e~~~~ls~~~~~~--~~~f~~~ 730 (1348)
.|+++..|.|-+||-.+..+|.-|.... +..|+.+
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 8999999999999999999888776553 3444443
No 366
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.76 E-value=0.25 Score=59.85 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=126.2
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce----------------------eEEe--------------eee
Q 000697 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ----------------------KLVT--------------AFS 1125 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~----------------------~lvs--------------~~~ 1125 (1348)
.|+.+.| ..+..-|++|...|.|-||+....+... ++.. +..
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 5888999 6788889999999999999875421111 0000 000
Q ss_pred cccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-------cCCCCCCeEEEEEe----cCCC--
Q 000697 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-------PSSSDCSISALTAS----QVHG-- 1192 (1348)
Q Consensus 1126 ~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l-------~~~~~~~VtsL~~~----s~dg-- 1192 (1348)
.+....+.|.. ++.+ +=+.+++|..+|.+.|.|++... .+..- .......|+++.|. ..|+
T Consensus 81 l~~~~~g~vta----l~~S-~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 81 LLDAKQGPVTA----LKNS-DIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EE---S-SEEE----EEE--BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred heeccCCcEeE----EecC-CCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 01112233333 4444 67899999999999999998877 55442 22234457777432 2222
Q ss_pred -CEEEEEeCCCeEEEEECCC-C-C-eeeEeecCCCCCCCCeEEEEEe-cC------------------CCCCEEEEEECC
Q 000697 1193 -GQLAAGFVDGSVRLYDVRT-P-D-MLVCSTRPHTQQVERVVGISFQ-PG------------------LDPAKIVSASQA 1249 (1348)
Q Consensus 1193 -~~LvsGs~DG~VrvwDlr~-~-~-~~v~~~~~~~~h~~~I~sl~~s-p~------------------~~g~~LaSgs~D 1249 (1348)
-.+++|...|.+.+|.+-. . . -.+........+.+.|..+..- .+ ..-+-++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 4788999999999998862 1 1 1111111112345666666532 22 001224444456
Q ss_pred CcEEEEEcCCCCcceEEEecCCCCeEEEEE-----eCCCCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCe
Q 000697 1250 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV-----HRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSV 1323 (1348)
Q Consensus 1250 G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~-----spdg~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~V 1323 (1348)
..++++...+.+...+.++ ..-....+.+ ...+..|++-..+|.|++|.+- -+.+..++. ... .....+
T Consensus 235 ~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l-~~~---~d~~~~ 309 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL-PPP---LDSRRL 309 (395)
T ss_dssp SEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--SS------HHHH
T ss_pred cceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC-CCc---cccccc
Confidence 7899999887643344442 2122233444 2356688888999999999964 466666665 321 122334
Q ss_pred EEEEEeCCCCEEEEEEC
Q 000697 1324 NCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1324 tslafspdg~~Latgs~ 1340 (1348)
....++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887765543
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.73 E-value=0.54 Score=57.49 Aligned_cols=248 Identities=14% Similarity=0.159 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC--------
Q 000697 1038 TKTALLQPFSPIVVAA-DENE----RIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCN-------- 1103 (1348)
Q Consensus 1038 I~sl~fspdg~~Latg-s~dg----~I~VWd~~t~~~l~~-~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-------- 1103 (1348)
+....++|+|+++|.+ +..| .++|+|+++|+.+.. +.... ...+.| .+++..|+-...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-----~~~~~W--~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-----FSSVSW--SDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-----SEEEEE--CTTSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-----cceEEE--eCCCCEEEEEEeCcccccccC
Confidence 4467899999988865 3334 499999999977653 23221 234888 6776665554422
Q ss_pred ---CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE---CC-CeEEEEECCCC---ceeeee
Q 000697 1104 ---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EV-SSIMLWDLEKE---QQMVNP 1173 (1348)
Q Consensus 1104 ---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg---~D-g~IrVWDl~t~---~~~v~~ 1173 (1348)
..|..|++.+....-.++ +.+...... .+.+..+.++.++++.. .+ ..+.+.|+..+ ......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lv-----fe~~~~~~~--~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELV-----FEEPDEPFW--FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEE-----EC-TTCTTS--EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred CCCcEEEEEECCCChHhCeeE-----EeecCCCcE--EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 237777776533333344 343333331 12377889999988763 23 45888888874 112333
Q ss_pred ecCCCCCCeEEEEEecCCCCEEEEE---eCCCeEEEEECCCCCe--eeEeecCCCCCCC--CeEEEEEecCCCCCEEEEE
Q 000697 1174 IPSSSDCSISALTASQVHGGQLAAG---FVDGSVRLYDVRTPDM--LVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1174 l~~~~~~~VtsL~~~s~dg~~LvsG---s~DG~VrvwDlr~~~~--~v~~~~~~~~h~~--~I~sl~~sp~~~g~~LaSg 1246 (1348)
+..+.......+ ... ++.+++.. ..++.|...++..... ....+- .|.. .+..+.... +.+++..
T Consensus 272 l~~~~~~~~~~v-~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~---~~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYV-DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK---DYLVLSY 343 (414)
T ss_dssp EEESSSS-EEEE-EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET---TEEEEEE
T ss_pred EeCCCCceEEEE-Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC---CEEEEEE
Confidence 333333323333 222 33344433 2346788888887652 111221 2223 455555532 3455555
Q ss_pred ECCCc--EEEEEcCCCCcceEEEec-CCCCeEEEEEeCCCCEE-EE-EeC--CCcEEEEEcCCceEEEE
Q 000697 1247 SQAGD--IQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPII-AS-GSA--KQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1247 s~DG~--I~IWDlr~~~~~v~t~~~-h~~~VtsLa~spdg~~L-as-gS~--Dg~I~Vwd~~g~~l~~i 1308 (1348)
..++. |+++|+..+ .....+.. -.+.|..+...+++..+ ++ .|. -+++..||+....+..+
T Consensus 344 ~~~~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EETTEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EECCccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 55554 888898822 23333332 34456666655655532 22 222 24567777655544444
No 368
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.68 E-value=0.094 Score=65.48 Aligned_cols=89 Identities=6% Similarity=-0.038 Sum_probs=59.9
Q ss_pred CcEEEEEcCC----CCcceEEEecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCce-------------EEEEecc
Q 000697 1250 GDIQFLDIRN----HKDAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-------------LGTIRYH 1311 (1348)
Q Consensus 1250 G~I~IWDlr~----~~~~v~t~~~h~~~VtsLa~spdg~~Lasg-S~Dg~I~Vwd~~g~~-------------l~~i~~~ 1311 (1348)
+.|.+.|.++ +...+..+.. ......+.++|||++++++ ..+.+|.|+|+.... ..+++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4577778776 2234444443 3456889999999977665 458899999965321 222221
Q ss_pred CCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1312 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1312 h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...-...+|.++|....|-.-|..|..||
T Consensus 374 --------GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 374 --------GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred --------CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 12335678999998888888899999996
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.59 E-value=0.03 Score=69.44 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
-.+++++|||..-.|+.|-.-|.+.||...+.+.-.....|. ..|..+.| +++|+.++|+..-|.|.+|+...-.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~---a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP---APIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC---CCceeEEe--cCCCCeEEEcCCCceeEEEEeeecc
Confidence 456789999999999999999999999988777666667777 89999999 8999999999999999999875210
Q ss_pred ------------CceeEEeeeecccC-------CCCcccc----cceEEEEe-------------cCCCeEEEEECCCeE
Q 000697 1116 ------------DKQKLVTAFSSIQG-------HKPGVRC----SNVVVDWQ-------------QQSGYLYASGEVSSI 1159 (1348)
Q Consensus 1116 ------------~~~~lvs~~~~l~~-------h~~~V~s----i~~~v~ws-------------~~~~~Ll~gg~Dg~I 1159 (1348)
++.....+++--.. ....|.+ +-....|. ++|..+++++.+|+|
T Consensus 135 ~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtV 214 (1416)
T KOG3617|consen 135 EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTV 214 (1416)
T ss_pred ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceE
Confidence 01111111111100 0000100 00001222 456678888999999
Q ss_pred EEEECCCCceeeeeecCCCC---------CCeEEEEEe--------cCCCC------EEE---EEeCCCeEEEEECCCCC
Q 000697 1160 MLWDLEKEQQMVNPIPSSSD---------CSISALTAS--------QVHGG------QLA---AGFVDGSVRLYDVRTPD 1213 (1348)
Q Consensus 1160 rVWDl~t~~~~v~~l~~~~~---------~~VtsL~~~--------s~dg~------~Lv---sGs~DG~VrvwDlr~~~ 1213 (1348)
+..|-.... ....+..+. ..|.++.-+ .+.|. .=+ .|+..|.|-+=... +
T Consensus 215 yyvdq~g~~--~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-G- 290 (1416)
T KOG3617|consen 215 YYVDQNGRQ--RTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-G- 290 (1416)
T ss_pred EEEcCCCcE--EEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-c-
Confidence 888854332 222222111 113332111 11110 000 01111111110000 0
Q ss_pred eeeEeecC-CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---cc---eEEEe---cCCCCeEEEEEeCCC
Q 000697 1214 MLVCSTRP-HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DA---YLTID---AHRGSLSALAVHRHA 1283 (1348)
Q Consensus 1214 ~~v~~~~~-~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~---~~---v~t~~---~h~~~VtsLa~spdg 1283 (1348)
+.+.-.. -......++|+++... +..++.|...|.+.+|--...+ .+ ..++. ...+.|+.+.|.|-.
T Consensus 291 -vLr~~eKyg~e~ge~~~c~cY~~~--~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 291 -VLRKSEKYGLELGEGILCMCYGEK--EIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred -cccCCcchhhhcCCceEEEEEecc--ceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 0000000 0012467999999988 8899999999999999533211 12 22232 335789999999977
Q ss_pred CEEEEEeCC
Q 000697 1284 PIIASGSAK 1292 (1348)
Q Consensus 1284 ~~LasgS~D 1292 (1348)
+.++..+..
T Consensus 368 ~~~avn~~~ 376 (1416)
T KOG3617|consen 368 STAAVNTEE 376 (1416)
T ss_pred chhhhhhhh
Confidence 666655543
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.56 E-value=0.12 Score=66.78 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCC
Q 000697 1054 DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130 (1348)
Q Consensus 1054 s~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h 1130 (1348)
.....|.-.|++.|+.+..|+.+.. ..|..++=.. .-+....++|-++..+..||.+... .+++.. ..+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~----~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDS----QSK 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeec----ccc
Confidence 3567788889999999999998871 2255443210 0124456677788889999997632 223310 111
Q ss_pred CCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 000697 1131 KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1348)
Q Consensus 1131 ~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDl 1209 (1348)
.. .+...+.+.-....|+|++|+.+|.||+||--... ....+++ -+.+|.+| ..+.+|+++++.+ +..+.++|.
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~-lG~pI~~i-Dvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPG-LGDPIIGI-DVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cc-ccCCCceEEEecCCceEEEEeCCCcEEeecccchh-hhhcCCC-CCCCeeEE-EecCCCcEEEEee-cceEEEEEE
Confidence 10 11111223334468999999999999999954333 3344444 45679999 6788999998776 456777775
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.51 E-value=0.12 Score=60.98 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC------CCEEEEEeC----------CCeEEEEECCCC----Ceee
Q 000697 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH------GGQLAAGFV----------DGSVRLYDVRTP----DMLV 1216 (1348)
Q Consensus 1157 g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d------g~~LvsGs~----------DG~VrvwDlr~~----~~~v 1216 (1348)
+.|++.|..+.+ .+..+.-.....+++++.+.-. ..+|+.|+. .|.|.+|++... .+..
T Consensus 2 s~i~l~d~~~~~-~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFE-VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSS-EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCe-EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 358888988887 7776665555557777554422 467777754 299999999984 1122
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe-cCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 000697 1217 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLI 1295 (1348)
Q Consensus 1217 ~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~-~h~~~VtsLa~spdg~~LasgS~Dg~I 1295 (1348)
... . ....++|++++--. +. |+++. ++.|.+|++.........-. .....++++... +.+++.|...+.+
T Consensus 81 ~i~-~-~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 81 LIH-S-TEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEE-E-EEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEE-E-EeecCcceEhhhhC---CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 111 1 12358899998762 44 54444 47899999997731222221 123356666665 5699999988888
Q ss_pred EEEE--cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1296 KVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1296 ~Vwd--~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.++. ..+..+..+.. .. ....++++.|-+++..++++..+|.+.++
T Consensus 152 ~~~~~~~~~~~l~~va~-d~-----~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DY-----QPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ES-----S-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEEEEEccCCEEEEEEe-cC-----CCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 8875 44555555543 21 13568889998666788899999999876
No 372
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.0085 Score=73.58 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=82.7
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEE
Q 000697 1229 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTI 1308 (1348)
Q Consensus 1229 I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i 1308 (1348)
|.--+++.. +.+++.|+.-|.+.+|+-..+........+..+.+..+.+|++..++|.|+..|.|.|+.+........
T Consensus 36 v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 333344444 889999999999999997765333333434556677888999999999999999999998543222221
Q ss_pred eccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEE
Q 000697 1309 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1346 (1348)
Q Consensus 1309 ~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~I 1346 (1348)
.+ -..+...|...|++++|+++++.+.+|...|+|..
T Consensus 114 ~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 114 DY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ee-eccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 11 11112236689999999999999999999898764
No 373
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.047 Score=71.05 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=108.5
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
.++++-.+|++++- -.|--+...||.+.++-.. +....-.+++.+.+..|+ ||.|.||.++|.|+||+=.
T Consensus 349 ~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEW--KERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhh
Confidence 35777788887775 5566566677888766544 344456778888999999 9999999999999999998
Q ss_pred cchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHH-HHHHHH-HHhhh
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRA-EISIIR-SLLTV 700 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~-~ll~~ 700 (1348)
++...-.....+.+...|+..+.|. .|.|-+.++.||=.|... +.... +.- =..+.. .+..+
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--------------~~~~~-l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--------------CDKSI-LEPYLDGLMEKKLLLL 483 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--------------CcHHH-HHHHHHHHHHHHHHHH
Confidence 8765444334455555566666655 789999998888888722 21111 110 011122 44556
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcchhH
Q 000697 701 VSDGSPLVRAEVAVALARFAFGHKQHL 727 (1348)
Q Consensus 701 ~~D~sp~VR~e~~~~ls~~~~~~~~~f 727 (1348)
...++|.|++.++-+++-+...=+..|
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 778999999999999887665433333
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.33 E-value=3.6 Score=52.03 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC-CCe-------EEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD-KGI-------SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~-~~I-------tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+..|++++.++.|.-.|.++|+.+.++....... ..+ ..+.+ .+..++.++.||.+.-.|..+ ++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~T--Gk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKT--GKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCC--CCE
Confidence 5577777778899999999999988876432100 010 11233 245777888899999888866 443
Q ss_pred eEEeeeecccCCC--CcccccceEEEEecCCCeEEEEEC------CCeEEEEECCCCceeeeeecCC-------------
Q 000697 1119 KLVTAFSSIQGHK--PGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSS------------- 1177 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~--~~V~si~~~v~ws~~~~~Ll~gg~------Dg~IrVWDl~t~~~~v~~l~~~------------- 1177 (1348)
.-.. ....+. ..+.+..++ .++.++++.. +|.|..+|.++++ .+-.+..-
T Consensus 143 ~W~~---~~~~~~~~~~~tssP~v-----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 143 VWSK---KNGDYKAGYTITAAPLV-----VKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred Eeec---ccccccccccccCCcEE-----ECCEEEEeecccccCCCcEEEEEECCCCc-eeEeccCcCCCcccccccccc
Confidence 3221 111111 112221111 1456666642 6889999999988 54433221
Q ss_pred -----------------CCCCeEEEEEecCCCCEEEEEeCC-----C-----------eEEEEECCCCCeeeEeecCCCC
Q 000697 1178 -----------------SDCSISALTASQVHGGQLAAGFVD-----G-----------SVRLYDVRTPDMLVCSTRPHTQ 1224 (1348)
Q Consensus 1178 -----------------~~~~VtsL~~~s~dg~~LvsGs~D-----G-----------~VrvwDlr~~~~~v~~~~~~~~ 1224 (1348)
.+..+......+++.++++.+..+ + +|.-.|+++++ ..-.++.. .
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~-~~W~~Q~~-~ 291 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK-IKWHYQTT-P 291 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC-EEEeeeCC-C
Confidence 111233222445556677766633 2 67777888887 44334321 2
Q ss_pred CCC-------CeEEEEEecCCCCC---EEEEEECCCcEEEEEcCCCCcce
Q 000697 1225 QVE-------RVVGISFQPGLDPA---KIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1225 h~~-------~I~sl~~sp~~~g~---~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
|.. ...-+.+..+ |+ .++.++.+|.+.+.|-+++ +++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~--G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKD--GKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred CCCccccCCCCcEEEEeccC--CcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 221 1122223233 54 7889999999999999887 554
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.32 E-value=2.8 Score=50.03 Aligned_cols=280 Identities=11% Similarity=0.036 Sum_probs=117.6
Q ss_pred EEcCCCCEEEEE-ECCCc--EEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCce
Q 000697 1042 LLQPFSPIVVAA-DENER--IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1042 ~fspdg~~Latg-s~dg~--I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
+|.++|+.|+.+ ..+|. +.+.|+++++..+--.+.. .......+ +++++.++-...+..|+--|+.+ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~T--~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFL--SPDDRALYYVKNGRSLRRVDLDT--LEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE---TTSSEEEEEETTTEEEEEETTT----E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---CCccceEE--ecCCCeEEEEECCCeEEEEECCc--CcE
Confidence 467889755544 44555 5555888877665443321 11112333 46667665555556777777766 333
Q ss_pred eEEeeeecccCCCCcccccceEEEEe-cCCCeEEEEEC-----------------------CCeEEEEECCCCceeeeee
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGE-----------------------VSSIMLWDLEKEQQMVNPI 1174 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws-~~~~~Ll~gg~-----------------------Dg~IrVWDl~t~~~~v~~l 1174 (1348)
+.+ ..+. ...+-. ..|. ..++..+++.. ...|.-.|+.+++ ....+
T Consensus 115 ~~v---y~~p--~~~~g~----gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~ 184 (386)
T PF14583_consen 115 RVV---YEVP--DDWKGY----GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVF 184 (386)
T ss_dssp EEE---EE----TTEEEE----EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEE
T ss_pred EEE---EECC--cccccc----cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEE
Confidence 333 1121 111111 2332 22333343321 1234455666665 32222
Q ss_pred cCCCCCCeEEEEEecCCCCEEEEEeC---CC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE-EE-C
Q 000697 1175 PSSSDCSISALTASQVHGGQLAAGFV---DG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-AS-Q 1248 (1348)
Q Consensus 1175 ~~~~~~~VtsL~~~s~dg~~LvsGs~---DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaS-gs-~ 1248 (1348)
. . ...+..+.+.+.+..+|+-+-+ +. .-|+|=+++.....+.+.... ....+.-=-|.|+ |..|.- +. .
T Consensus 185 ~-~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~D--G~~i~y~~~~~ 259 (386)
T PF14583_consen 185 E-D-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPD--GSTIWYDSYTP 259 (386)
T ss_dssp E-E-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TT--SS-EEEEEEET
T ss_pred e-c-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCC--CCEEEEEeecC
Confidence 2 2 2346777555556666666543 22 136676664432333332221 1234444557777 554432 22 2
Q ss_pred ---CCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCC----------------cEEEEEcCCceEEEEe
Q 000697 1249 ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ----------------LIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1249 ---DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg----------------~I~Vwd~~g~~l~~i~ 1309 (1348)
+..|.-+|..++. ...... ...-..+..+++|.+++-=+.|. -|++++........+.
T Consensus 260 ~~~~~~i~~~d~~t~~-~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGE-RRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TT--EEEEEE-TTT---EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCceEEEeeCCCCCC-ceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 2246667777652 222121 12344566678888887544432 4556776655555555
Q ss_pred ccCCc-c---cccccCCeEEEEEeCCCCEEEEEE-CCCeEEEc
Q 000697 1310 YHHPS-F---MAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIH 1347 (1348)
Q Consensus 1310 ~~h~~-f---~~~~~~~Vtslafspdg~~Latgs-~Dg~I~IW 1347 (1348)
. |.. + .+.+...=....|+||+++++-.| ..|...||
T Consensus 337 ~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 337 R-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred e-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 4 431 1 111111225679999998766554 47877765
No 376
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.29 E-value=0.14 Score=64.18 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=154.9
Q ss_pred HhHhhhHHHhcCCCCCCCCCCchhhHHHHhhchhhHH--HHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhh
Q 000697 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1348)
Q Consensus 441 ~~Ltafe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rl--ral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr 518 (1348)
+.|+.++..+..-+.....|. |+++..|.+...+. -++.+|.+.++...+... ..++.+++.+.|+++.+..|
T Consensus 20 ~~L~~l~~~~~~~~~l~~~~~--~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 20 EALPELKTELSSSPFLERLPE--PVLFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred HHHHHHHHHHhhhhHHHhchH--HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHH
Confidence 557777766654442222222 34555566552221 233356777766655543 46888999999999999999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000697 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1348)
Q Consensus 519 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 598 (1348)
..++-.+.++..........+...+.+...+..|.+++. +....++=+|..+.. ++.+-..-+..++...+..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~- 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMS- 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHh-
Confidence 998888888887655545556677888999999988875 778888889999986 4555555668888888888887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 599 ~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
.++..+|-=+.=++.++....++.-..+.+.++...++..|++....||..++=.|+.+..
T Consensus 171 ------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 171 ------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred ------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 4455666556667888888888888888999999999999999999999999999999984
No 377
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.26 E-value=0.013 Score=54.67 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=63.6
Q ss_pred hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 000697 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1348)
Q Consensus 546 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~ 625 (1348)
+.+++.|.. +..+..|..++.+|+.+. ...+...+..+++ |++|.||.+++.+||++=.
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~i~~-- 60 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELG-----------DPEAIPALIELLK-------DEDPMVRRAAARALGRIGD-- 60 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-------SSSHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC--
Confidence 345667733 223689999999998442 3367888999998 8999999999999998821
Q ss_pred hHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHH
Q 000697 626 TEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLG 661 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~ 661 (1348)
..+...|..++. |.+..||.+++.+||
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123346777664 567889999999987
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.25 E-value=0.11 Score=50.73 Aligned_cols=100 Identities=17% Similarity=0.320 Sum_probs=67.8
Q ss_pred EEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1141 VDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1141 v~ws~~~-~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
++|..++ ..|++|++|..||+|+-. . .+.++.... .|++++.. .+..|+.|..+|+|.+|+.... .|
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e-~~~Ei~e~~--~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~R-----lW 75 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--E-IVAEITETD--KVTSLCSL--GGGRFAYALANGTVGVYDRSQR-----LW 75 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--c-EEEEEeccc--ceEEEEEc--CCCEEEEEecCCEEEEEeCcce-----ee
Confidence 4455443 579999999999999854 4 677776643 38888444 4578999999999999986432 22
Q ss_pred cCCCCCCCCeEEEEEecC-C-CCCEEEEEECCCcEEE
Q 000697 1220 RPHTQQVERVVGISFQPG-L-DPAKIVSASQAGDIQF 1254 (1348)
Q Consensus 1220 ~~~~~h~~~I~sl~~sp~-~-~g~~LaSgs~DG~I~I 1254 (1348)
+... +..++++++..- + +...|++|-.+|.|-+
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2221 244777766443 1 3358999999998743
No 379
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.20 E-value=0.087 Score=66.49 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=101.7
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 501 gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
-+|+.+++++++...+.|.+.-..|..+...++.-- .+ ..+.+.+-|.+++ +..|.++.=+|+.+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n--~~~~~lAL~~l~~i~------- 107 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPN--PYIRGLALRTLSNIR------- 107 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSS--HHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCC--HHHHHHHHhhhhhhc-------
Confidence 678999999999999999886666667777665511 11 2234444455544 578888888888876
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1348)
..-+-..+...+...|. +++|.||.-+++|+.++...+++. ++......+..+|.|.+|.|+.+++.++
T Consensus 108 ~~~~~~~l~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp SHHHHHHHHHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 11133456777788888 899999999999999999876552 1122566888999999999999999999
Q ss_pred Hhh
Q 000697 661 GTL 663 (1348)
Q Consensus 661 ~~~ 663 (1348)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.18 E-value=1.9 Score=50.49 Aligned_cols=210 Identities=12% Similarity=0.134 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCEEEEEE--CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1038 TKTALLQPFSPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1038 I~sl~fspdg~~Latgs--~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
...++++.||+++++.. -.-.|.|-|++.++.+..+.... ..+.| +..+ .-+.+-+.||.+.-..+.. .
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iy-P~~~-~~F~~lC~DGsl~~v~Ld~-~ 167 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIY-PSGN-RGFSMLCGDGSLLTVTLDA-D 167 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEE-EEET-TEEEEEETTSCEEEEEETS-T
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEE-ecCC-CceEEEecCCceEEEEECC-C
Confidence 34567889999887754 44579999999999998888665 22333 3333 4577888999999888875 3
Q ss_pred CceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCC-----------CCCCeE
Q 000697 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSS-----------SDCSIS 1183 (1348)
Q Consensus 1116 ~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~v~~l~~~-----------~~~~Vt 1183 (1348)
|+.... ....+.....++.. .-.+...++.++-.+.+|.|+--|+..... ....+..- .+..+.
T Consensus 168 Gk~~~~-~t~~F~~~~dp~f~---~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 168 GKEAQK-STKVFDPDDDPLFE---HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp SSEEEE-EEEESSTTTS-B-S-----EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCEeEe-eccccCCCCccccc---ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 443322 22233332333322 134455666666678888888888876650 11222110 111222
Q ss_pred EEEEecCCCCEEEEEe--CCC-------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEE
Q 000697 1184 ALTASQVHGGQLAAGF--VDG-------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQ 1253 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs--~DG-------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs-~DG~I~ 1253 (1348)
+ +....+++++.-. .+| .|.+||+.+++.+ ..+ ... ..+.+|.++.+ ....|++.+ .++.+.
T Consensus 244 A--~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv-~Ri-~l~---~~~~Si~Vsqd-~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 244 A--YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV-ARI-PLE---HPIDSIAVSQD-DKPLLYALSAGDGTLD 315 (342)
T ss_dssp E--EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE-EEE-EEE---EEESEEEEESS-SS-EEEEEETTTTEEE
T ss_pred e--eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE-EEE-eCC---CccceEEEccC-CCcEEEEEcCCCCeEE
Confidence 2 2334444444321 122 5888899998844 444 221 46779999988 556776654 578999
Q ss_pred EEEcCCCCcceEEEec
Q 000697 1254 FLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1254 IWDlr~~~~~v~t~~~ 1269 (1348)
+||..++ +.++++..
T Consensus 316 v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 316 VYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEETTT---EEEEE--
T ss_pred EEeCcCC-cEEeehhc
Confidence 9999998 78887764
No 381
>PTZ00429 beta-adaptin; Provisional
Probab=96.05 E-value=0.062 Score=69.65 Aligned_cols=141 Identities=12% Similarity=0.144 Sum_probs=95.5
Q ss_pred cChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 543 ~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
.+|...++.+++.+ .++|.|+-+-|...-+..++- ---+.+.+.+=++ |++|.+|..++=.|+.+-
T Consensus 68 ~LF~dVvk~~~S~d--~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~-------d~Np~IRaLALRtLs~Ir 133 (746)
T PTZ00429 68 YLFVDVVKLAPSTD--LELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTT-------NSSPVVRALAVRTMMCIR 133 (746)
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcC-------CCCHHHHHHHHHHHHcCC
Confidence 35556666666665 499999998887775444331 1112334444455 889999999999998766
Q ss_pred ccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 000697 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS 702 (1348)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~ 702 (1348)
.. + +-+.+...+-.++.|++|-||+.+++++.++.....+.. .+..+...|..++.
T Consensus 134 ~~--~-----i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-----------------~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 134 VS--S-----VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-----------------YQQDFKKDLVELLN 189 (746)
T ss_pred cH--H-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----------------cccchHHHHHHHhc
Confidence 42 1 222334456788899999999999999999974432111 12223344556678
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 000697 703 DGSPLVRAEVAVALARFAF 721 (1348)
Q Consensus 703 D~sp~VR~e~~~~ls~~~~ 721 (1348)
|.+|+|...++.+|..+..
T Consensus 190 D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 9999999999998877753
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.24 Score=59.54 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=97.7
Q ss_pred EecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC-------CEEEEEeCCCeEEEEECCCCCe
Q 000697 1143 WQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-------GQLAAGFVDGSVRLYDVRTPDM 1214 (1348)
Q Consensus 1143 ws~~~~~Ll~g-g~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg-------~~LvsGs~DG~VrvwDlr~~~~ 1214 (1348)
...+.+.|+.. +.-..++-.|+++++ .+.++..+.+-.+..+ .++. ..-+.|-.|..|.-||.|-...
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~di~mv~~---t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDDINMVDI---TPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccce-eeeEeeccCCcceeec---cCCcchhcccccccEEeecCCceEEecccccCc
Confidence 33455555555 445668999999999 9999998766223332 2322 2234577899999999995442
Q ss_pred -eeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCC
Q 000697 1215 -LVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1292 (1348)
Q Consensus 1215 -~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~D 1292 (1348)
.+...+.+. ..+....|.+-.. ..+||+||.+|.|++||- .+......+.+-..+|..+..+.+|++|++.+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~- 491 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK- 491 (644)
T ss_pred ceeeeeeccccccccccceeeecC---CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence 111111111 1123344555443 568999999999999997 443566677788889999999999998876654
Q ss_pred CcEEEEE
Q 000697 1293 QLIKVFS 1299 (1348)
Q Consensus 1293 g~I~Vwd 1299 (1348)
..+.+.+
T Consensus 492 tyLlLi~ 498 (644)
T KOG2395|consen 492 TYLLLID 498 (644)
T ss_pred cEEEEEE
Confidence 4666666
No 383
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.03 E-value=0.02 Score=61.53 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1348)
|..|.-+..+++-+|..|+. +=+.....+...|+ |++|.||.-++.+|++|... +- +-++..+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~-------D~~~~VR~~al~~Ls~Li~~-d~---ik~k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLR-------DEDPLVRKTALLVLSHLILE-DM---IKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHc-Cc---eeehhhhh
Confidence 57899999999999988876 44556778888899 89999999999999999854 11 22444554
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhhccc
Q 000697 639 AIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 666 (1348)
..++.++.|++|+||+.+.++|..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999854
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.99 E-value=4.1 Score=46.66 Aligned_cols=238 Identities=15% Similarity=0.192 Sum_probs=124.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeE---E
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL---V 1121 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l---v 1121 (1348)
..++.|+.|.++| +.+++.........+.... .|..+... ++-+.|++-+ ||.+.++++..-...... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 4678999999888 8999984333333333222 48899885 4555555554 499999998652211100 0
Q ss_pred eeee-cccCCCCcccccceEEE--EecCCCeEEEEECCCeEEEEECCCC-----ceeeeeecCCCCCCeEEEEEecCCCC
Q 000697 1122 TAFS-SIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIMLWDLEKE-----QQMVNPIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1122 s~~~-~l~~h~~~V~si~~~v~--ws~~~~~Ll~gg~Dg~IrVWDl~t~-----~~~v~~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
..-. .............+ .+ -...+...++....+.|.+|..... . ..+++... ..+.++++. ++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~-~~ke~~lp--~~~~~i~~~---~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK-LLKEISLP--DPPSSIAFL---GN 149 (275)
T ss_pred ccccccccccccccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccc-eeEEEEcC--CCcEEEEEe---CC
Confidence 0000 00001111111100 11 1123444555555568888877653 3 45555543 337888665 67
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCC---------CCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ---------QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1264 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~---------h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v 1264 (1348)
.++.|..++ ..+.|+.++. .......... ...++..+.. ++ +.+|++- |..-.+.|.. + ++.
T Consensus 150 ~i~v~~~~~-f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~e~Ll~~--~~~g~fv~~~-G-~~~ 220 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SD--NEFLLCY--DNIGVFVNKN-G-EPS 220 (275)
T ss_pred EEEEEeCCc-eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe-CC--ceEEEEe--cceEEEEcCC-C-CcC
Confidence 888887655 7788998665 2222211110 1123333333 22 4555543 3333444443 2 222
Q ss_pred E--EEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCceEEEEec
Q 000697 1265 L--TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1310 (1348)
Q Consensus 1265 ~--t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd-~~g~~l~~i~~ 1310 (1348)
+ .+.- .....+++++ .+++++.+. +.|.||+ .+|+.++.+..
T Consensus 221 r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 221 RKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2 2222 2245566664 467777665 4599999 57888888876
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.99 E-value=0.57 Score=57.27 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=87.2
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeE-----EE
Q 000697 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV-----GI 1232 (1348)
Q Consensus 1158 ~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~-----sl 1232 (1348)
.|+||+..... +..+.-.. ..|.++ .|.. ...|++-..||.+++||+.... ...+ ...-....|. ..
T Consensus 62 ~I~iys~sG~l--l~~i~w~~-~~iv~~-~wt~-~e~LvvV~~dG~v~vy~~~G~~--~fsl-~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDS-GRIVGM-GWTD-DEELVVVQSDGTVRVYDLFGEF--QFSL-GEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCCCCE--eEEEEECC-CCEEEE-EECC-CCeEEEEEcCCEEEEEeCCCce--eech-hhhccccCccccccccc
Confidence 58999876554 66655444 459999 4544 4567777899999999997433 1111 0000111222 22
Q ss_pred EEecCCCCCEEEEEECCCcEEEEEcCCCCcce--EEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEec
Q 000697 1233 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1310 (1348)
Q Consensus 1233 ~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v--~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~ 1310 (1348)
.+..+ |-.++ ..++.+.+. .+..++. +.+..-........+.+....+...+.++.+.|.-..|..+..+..
T Consensus 134 ~~~~~--GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~ 207 (410)
T PF04841_consen 134 WFYKN--GIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDE 207 (410)
T ss_pred ccCCC--CEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEc
Confidence 22222 43333 334544443 2221121 1111111111111112211112223334444444445555554443
Q ss_pred cCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
+....-...+++..|+.||+++++|.-..+|.+.|.
T Consensus 208 -~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 208 -NSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred -cccccccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 221000123689999999999999999999998775
No 386
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.07 Score=68.02 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=106.2
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000697 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1348)
Q Consensus 501 gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 580 (1348)
.+||-|+|..++...|+|.++=+-|-++-...|.-+..+ .+.|.+=|++++ ++.|.++.=-|+.+ .
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kDl~d~N--~~iR~~AlR~ls~l-------~ 120 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VNTIQKDLQDPN--EEIRGFALRTLSLL-------R 120 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhhccCCC--HHHHHHHHHHHHhc-------C
Confidence 459999999998899999998888877777777333222 345666666665 69998888777766 2
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHH
Q 000697 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1348)
Q Consensus 581 ~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1348)
.-.+-+.++.-+.++++ |+.|.||+-+++|++++..-.. ...-+.+....+-.++.|.+|.|-++|+.+|
T Consensus 121 ~~el~~~~~~~ik~~l~-------d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 121 VKELLGNIIDPIKKLLT-------DPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred hHHHHHHHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 22345666777777888 9999999999999999995322 2334444566677888999999999999999
Q ss_pred Hhhc
Q 000697 661 GTLL 664 (1348)
Q Consensus 661 ~~~i 664 (1348)
-.+-
T Consensus 191 ~~i~ 194 (757)
T COG5096 191 AEID 194 (757)
T ss_pred HHhc
Confidence 8876
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.86 E-value=7.6 Score=50.58 Aligned_cols=279 Identities=16% Similarity=0.179 Sum_probs=146.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCc-------EEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEe---CCCeE
Q 000697 1039 KTALLQPFSPIVVAADENERIKIWNYEEDT-------LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS---CNGNI 1106 (1348)
Q Consensus 1039 ~sl~fspdg~~Latgs~dg~I~VWd~~t~~-------~l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs---~DG~I 1106 (1348)
.|+..-+ ...|.+|+.-|.=.+-.+.+.. .+.+|.+- ++|.+++..+.. .+..++|++ .||++
T Consensus 310 ssi~~L~-ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NL----gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 310 SSINYLD-NGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNL----GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred hhhhccc-CceEEEeccCCceeeEEccccCCCCchhhhhhhcccc----cceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 3444443 4477888877776666654322 22334433 489999887544 456777765 58999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000697 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~ 1186 (1348)
||.+..- +-.++. ...+.| ...++.+...+.=+.+. +++.+- -+.-++..+..+- ......+-... ...+.
T Consensus 385 RiiRngi--~I~e~A--~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~-ee~~~~gf~~~-~~Tif 455 (1096)
T KOG1897|consen 385 RIIRNGI--GIDELA--SIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEV-EETEDPGFSTD-EQTIF 455 (1096)
T ss_pred EEEeccc--ccceee--EeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccce-EEecccccccc-CceEE
Confidence 9998743 211211 112333 22222211111112222 555543 3334455544332 22222222221 33342
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEE
Q 000697 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1266 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t 1266 (1348)
+..-.++.++=.. ...||++|-. + ....|+.. ..++....+-+ ...++.++.++.+...++...+ ++.
T Consensus 456 ~S~i~g~~lvQvT-s~~iRl~ss~-~--~~~~W~~p----~~~ti~~~~~n--~sqVvvA~~~~~l~y~~i~~~~--l~e 523 (1096)
T KOG1897|consen 456 CSTINGNQLVQVT-SNSIRLVSSA-G--LRSEWRPP----GKITIGVVSAN--ASQVVVAGGGLALFYLEIEDGG--LRE 523 (1096)
T ss_pred EEccCCceEEEEe-cccEEEEcch-h--hhhcccCC----CceEEEEEeec--ceEEEEecCccEEEEEEeeccc--eee
Confidence 3334455544333 3468888766 1 23334332 34444444444 5577788878888888887663 222
Q ss_pred Ee--cCCCCeEEEEEeCC------CCEEEEEeCCCcEEEEE--cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEE
Q 000697 1267 ID--AHRGSLSALAVHRH------APIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1336 (1348)
Q Consensus 1267 ~~--~h~~~VtsLa~spd------g~~LasgS~Dg~I~Vwd--~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~La 1336 (1348)
.. .....|.|++++|- .++++.|.++..+.+.- -+...+..... ... .-...|--..|-.+..+|.
T Consensus 524 ~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-~~~---~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 524 VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-SGE---IIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-CCC---ccchheeeEEeeccceEEE
Confidence 22 23568999999974 23789998877665544 23333222211 000 0113455566666788999
Q ss_pred EEECCCeEEEc
Q 000697 1337 AGSADACVSIH 1347 (1348)
Q Consensus 1337 tgs~Dg~I~IW 1347 (1348)
++..||.+.-|
T Consensus 600 valgdG~l~~f 610 (1096)
T KOG1897|consen 600 VALGDGALLYF 610 (1096)
T ss_pred EEcCCceEEEE
Confidence 99999987644
No 388
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.72 E-value=2.6 Score=48.32 Aligned_cols=217 Identities=14% Similarity=0.193 Sum_probs=119.3
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000697 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1348)
Q Consensus 1092 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v 1171 (1348)
..++.|+.|+.+| +.+++.....+..+.. +...|.. +..-++-+.+++-+ ||.++++|+..-. ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~q----l~vl~~~~~llvLs-d~~l~~~~L~~l~-~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQ----LSVLPELNLLLVLS-DGQLYVYDLDSLE-PV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEE----EEEecccCEEEEEc-CCccEEEEchhhc-cc
Confidence 4678999999999 8888883312222211 1122555 44455556666554 4999999987654 22
Q ss_pred eee-------------cCCCCCCeEEEE-EecCCCCEEEEEeCCCeEEEEECCCCC----eeeEeecCCCCCCCCeEEEE
Q 000697 1172 NPI-------------PSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVGIS 1233 (1348)
Q Consensus 1172 ~~l-------------~~~~~~~VtsL~-~~s~dg~~LvsGs~DG~VrvwDlr~~~----~~v~~~~~~~~h~~~I~sl~ 1233 (1348)
..- .......+...+ .....+...++......|.+|...... ...+.+. . ...+.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l---p~~~~~i~ 145 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L---PDPPSSIA 145 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c---CCCcEEEE
Confidence 210 111111244442 122344444555556699998887642 2333332 2 26889999
Q ss_pred EecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 000697 1234 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1301 (1348)
Q Consensus 1234 ~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h------------~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~ 1301 (1348)
|.. +.++.|..+ ...+.|+.++ .....+... ..++..+... ++.+|++. |..-.+.|..
T Consensus 146 ~~~----~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 146 FLG----NKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred EeC----CEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC
Confidence 974 477777755 4788899865 333222211 1233334443 45666654 3444556677
Q ss_pred CceEE--EEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1302 GEQLG--TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1302 g~~l~--~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
|+... .++- .....++++. ..+|++.+. +.|.||+
T Consensus 217 G~~~r~~~i~W---------~~~p~~~~~~--~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 217 GEPSRKSTIQW---------SSAPQSVAYS--SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred CCcCcccEEEc---------CCchhEEEEE--CCEEEEECC-CEEEEEE
Confidence 76554 3332 1345666663 457776654 4588774
No 389
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.62 E-value=0.017 Score=57.15 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=64.7
Q ss_pred hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 585 ~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+-.++.+++.+|.. ..+|..-+-+|.=||.|+.-+|.++.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 41 ~~~llk~L~~lL~~------s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDK------SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcc------CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44577888888853 458999999999999999999999999988899999999999999999999999999988
Q ss_pred c
Q 000697 665 D 665 (1348)
Q Consensus 665 ~ 665 (1348)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.62 E-value=0.026 Score=41.72 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.1
Q ss_pred cceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000697 1262 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1262 ~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd 1299 (1348)
.+...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999996
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.53 E-value=0.5 Score=46.31 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=68.1
Q ss_pred eEEEEEecCCC---CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 000697 1182 ISALTASQVHG---GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1258 (1348)
Q Consensus 1182 VtsL~~~s~dg---~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr 1258 (1348)
|++|+.+.-++ +.|++|+.|..||+|+-.. ++..+.. .+.|++++-.. +..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e----~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE----TDKVTSLCSLG---GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec----ccceEEEEEcC---CCEEEEEecCCEEEEEeCc
Confidence 56665555444 6899999999999997542 4444422 26788887664 4679999999999999864
Q ss_pred CCCcceEEEecCCCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 000697 1259 NHKDAYLTIDAHRGSLSALAVHR-H--A-PIIASGSAKQLIKV 1297 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~VtsLa~sp-d--g-~~LasgS~Dg~I~V 1297 (1348)
. .+-.++. +..++++++.. + | +-|++|-.+|.|-+
T Consensus 72 ~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 2223332 33466666554 2 2 27888888887743
No 392
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.51 E-value=6.1 Score=45.38 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=133.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC-------CCcEEEEeeCCC--CCCCCeEEEEEEeeCCCC------------
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYE-------EDTLLNSFDNHD--FPDKGISKLCLVNELDVS------------ 1095 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~-------t~~~l~~~~~h~--~~~~~ItsL~f~ns~d~~------------ 1095 (1348)
-.+.|+|+|.+.+-++....+...+||.. ...++-++.... ......+.+.| +....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVf--N~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVF--NGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEE--eCCCceEEcCCCcccce
Confidence 36789999999887777788999999986 112333443211 11246788888 22222
Q ss_pred EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCC-CCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-
Q 000697 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN- 1172 (1348)
Q Consensus 1096 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h-~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~- 1172 (1348)
.++.+++||+|.-|....... .+......+... ...|+. ++.+.-...+.+|+++. ..++|.|+|-.-.. ...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t--~~~~~~~~~d~s~~gavYk-GLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTT--RMTRAEIVVDASQQGNVYK-GLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcc--cccccEEEEccCCCcceee-eeEEeecCCCceEEEeccCCCceEEecCcccc-ccCC
Confidence 367788999999998643111 111111112211 233433 22333334467888885 67999999865332 110
Q ss_pred -e-----ecCCC-CCCeEEE--------EEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1173 -P-----IPSSS-DCSISAL--------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1173 -~-----l~~~~-~~~VtsL--------~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
. ++..- ...|..+ +...++++.=+.|..-|.|-+||.... .++.+ ...+.-..-..|+..|.
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe-ccCCcccCCceeeeChh
Confidence 0 11100 0012111 011222333344556689999998754 34444 33344455667777554
Q ss_pred ----CCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC------CCeEEEEEeC
Q 000697 1238 ----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------GSLSALAVHR 1281 (1348)
Q Consensus 1238 ----~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~------~~VtsLa~sp 1281 (1348)
..+.+|+---.||+|..||..++ ..+-.+.... ..++.|.|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 24778887778999999999877 5555555432 3577888875
No 393
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.45 E-value=0.3 Score=61.62 Aligned_cols=180 Identities=18% Similarity=0.153 Sum_probs=131.1
Q ss_pred CCCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000697 458 KPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 458 ~~p~~lP~vLq~LlS~~~rlral~--ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
+...-+|-|.+++.|+.+++|-+. .+..|.+..|-...|+ ..-+.|=|+++.+..|..++=.++.|.. +.-
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~ 111 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNPYIRGLALRTLSNIRT--PEM 111 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cch
Confidence 344688999999999999998887 4568888888766654 3556788888888888888777777662 221
Q ss_pred hhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000697 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~ 615 (1348)
- +.+.....+.|.+++ |..|.=++.++..+.+.+|.- +-.. +.+.+..+|. |++|.|+..++
T Consensus 112 ~-----~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~-------d~~~~V~~~a~ 173 (526)
T PF01602_consen 112 A-----EPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLS-------DKDPSVVSAAL 173 (526)
T ss_dssp H-----HHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTT-------HSSHHHHHHHH
T ss_pred h-----hHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhcc-------CCcchhHHHHH
Confidence 1 223455666776555 588999999999999887762 1122 6888889998 88999999999
Q ss_pred HHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.+|..+ ...+..-. .+-......|..++.+++|-++..++-.|..+.
T Consensus 174 ~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 174 SLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 999999 33333211 222333456777789999999999999999887
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.41 E-value=7.8 Score=49.07 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=90.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEeC------CCeEEEEeccCCCCcee
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASC------NGNIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~-~~~ItsL~f~ns~d~~~L~tgs~------DG~IrIWdl~~~~~~~~ 1119 (1348)
+..++.++.++.+.-.|.++|+.+..+...... ...+++--.+ .+..++++.. +|.|..+|..+ ++..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~T--G~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKT--GKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCC--Ccee
Confidence 346777888999999999999998876543211 0122221111 1234555542 67888888866 3222
Q ss_pred EEeeeecccCC----------------------------CCcccccceEEEEecCCCeEEEEEC-----CC---------
Q 000697 1120 LVTAFSSIQGH----------------------------KPGVRCSNVVVDWQQQSGYLYASGE-----VS--------- 1157 (1348)
Q Consensus 1120 lvs~~~~l~~h----------------------------~~~V~si~~~v~ws~~~~~Ll~gg~-----Dg--------- 1157 (1348)
-. +...... ...+.. ...+.+..+.++.+.. ++
T Consensus 195 W~--~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~---~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 195 WR--RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWG---TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred Ee--ccCcCCCcccccccccccccccccCCCCCCccccCCCCccC---ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 11 1111110 112222 2566777788887742 22
Q ss_pred --eEEEEECCCCceeeeeecCCCCC-------CeEEEEEecCCCC---EEEEEeCCCeEEEEECCCCCe
Q 000697 1158 --SIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDM 1214 (1348)
Q Consensus 1158 --~IrVWDl~t~~~~v~~l~~~~~~-------~VtsL~~~s~dg~---~LvsGs~DG~VrvwDlr~~~~ 1214 (1348)
.|.-.|+++++ ..-.++..+.. .-..|.-...+|+ .++.+..+|.+.+.|.++++.
T Consensus 270 ~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 270 TSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 57778999988 66555532111 0111211224555 788999999999999999874
No 395
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.38 E-value=5 Score=48.05 Aligned_cols=263 Identities=11% Similarity=0.097 Sum_probs=132.3
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCC
Q 000697 1044 QPFSPIVVAAD---------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1044 spdg~~Latgs---------~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1114 (1348)
|||+++++... ..+.+.|||+++++....... . ..+....| +|+|+.++-.. ++.|.+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~- 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLAT- 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE---SSSTEEEEEE-TTEEEEESSTT-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---ccccccee--ecCCCeeEEEe-cCceEEEECCC-
Confidence 67888777642 356789999998765443333 2 57888899 78999988876 46899998765
Q ss_pred CCceeEEeeee---cccCCCC-----cccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCC-CCCeEE
Q 000697 1115 KDKQKLVTAFS---SIQGHKP-----GVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1184 (1348)
Q Consensus 1115 ~~~~~lvs~~~---~l~~h~~-----~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~-~~~Vts 1184 (1348)
+....++.-. .+.|... .+......+-|+|++.+|+... ++..|+.+.+.... ..+. -..+..
T Consensus 73 -~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~------~~~~~yp~~~~ 145 (353)
T PF00930_consen 73 -GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS------PPDSQYPEVES 145 (353)
T ss_dssp -SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES------SSTESS-EEEE
T ss_pred -CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC------CccccCCcccc
Confidence 2222221100 0001110 1111122488999999998874 55555554432111 0000 011344
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEE--ECCC---cEEEEEcC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSA--SQAG---DIQFLDIR 1258 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~-~~~~h~~~I~sl~~sp~~~g~~LaSg--s~DG---~I~IWDlr 1258 (1348)
+ -.+.-|.--. .-.+.|+|+.+++....... ........+..+.|.++ +..|+.. +.+. .+.++|..
T Consensus 146 ~-~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 I-RYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp E-E--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEEEEEEC
T ss_pred c-ccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEEEEECC
Confidence 4 2232222221 12466788887763211111 01123467899999998 6633333 3333 36777887
Q ss_pred CCCcceEEEecCCCCe---EEEEEe-CCCC-EEEEEeCCCc--EEEEEcCCceEEEEeccCCcccccccCCeEE-EEEeC
Q 000697 1259 NHKDAYLTIDAHRGSL---SALAVH-RHAP-IIASGSAKQL--IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC-LTFHP 1330 (1348)
Q Consensus 1259 ~~~~~v~t~~~h~~~V---tsLa~s-pdg~-~LasgS~Dg~--I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vts-lafsp 1330 (1348)
++...+.......+.| ....+. +++. ++.....||. |.+++.++.....+.. . .-.|.. +.+++
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G-------~~~V~~i~~~d~ 290 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-G-------DWEVTSILGWDE 290 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S-------SS-EEEEEEEEC
T ss_pred CCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-C-------ceeecccceEcC
Confidence 6532222222233332 245554 5555 5555556665 5555677776555443 1 134533 67777
Q ss_pred CCCEEE
Q 000697 1331 YQVLLA 1336 (1348)
Q Consensus 1331 dg~~La 1336 (1348)
++..|.
T Consensus 291 ~~~~iy 296 (353)
T PF00930_consen 291 DNNRIY 296 (353)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 776554
No 396
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.69 Score=53.34 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=120.8
Q ss_pred CchhhHHHHhhchhhHHHHHHHHH-HHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLG-RFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~-~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
.-.|-+.++.-+...+.+-.--++ |-|....-=..--+.-|.+|..++|||++.--+-.--||.. |=+++.|---. +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI-rnisihplNe~-l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI-RNISIHPLNEV-L 328 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH-hhcccccCccc-c
Confidence 344555555555554444332211 22222211123334669999999999987432222223332 22555554333 3
Q ss_pred hhccC-hhhhhhhccCCCCchHHHHHH-HHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Q 000697 540 VKDGG-HAYFIRFLDSMEAYPEQRAMA-AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1348)
Q Consensus 540 ~k~~~-~~yf~~~L~~~~~~~~~r~~~-afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~ 617 (1348)
+-+.| ..-.+++|...++ |.-|.. .=.|=-+-..+.....+-+..+++.+|.+++- |..-+||.=.--|
T Consensus 329 I~dagfl~pLVrlL~~~dn--EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-------D~pvsvqseisac 399 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDN--EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-------DGPVSVQSEISAC 399 (550)
T ss_pred eecccchhHHHHHHhcCCc--hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-------cCChhHHHHHHHH
Confidence 33444 4556778876665 333322 22232233346777888889999999999998 6667788888888
Q ss_pred HHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcc
Q 000697 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1348)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1348)
+++|--+ +.-|..-.+.++...|++++.|.+-|||--+.-||+.|-+
T Consensus 400 ~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 400 IAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 8887643 3445566888999899999999999999999999999973
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.28 E-value=0.054 Score=39.93 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1321 GSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1321 ~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
..|.++.|++++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 7899999999999999999999999997
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.51 Score=61.12 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=65.8
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000697 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1348)
Q Consensus 1029 ~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1108 (1348)
.|+...+++|++++|+.+|..++.|-.+|.|.+||...++.++.+..+..+...|-.+.+ ..++..++++...|. +
T Consensus 124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~--t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGR--TSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEE--eCCCcEEEEccCCCc--e
Confidence 577888899999999999999999999999999999999999998888855556666666 345667888888776 6
Q ss_pred Eec
Q 000697 1109 WKD 1111 (1348)
Q Consensus 1109 Wdl 1111 (1348)
|..
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 665
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.22 E-value=0.79 Score=58.41 Aligned_cols=224 Identities=13% Similarity=0.168 Sum_probs=115.6
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-C-----eEEEEeccC
Q 000697 1046 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-G-----NIRIWKDYD 1113 (1348)
Q Consensus 1046 dg~~Latgs~d------g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G-----~IrIWdl~~ 1113 (1348)
.+.++++|+.+ ..+..||..+++......-.. ...-.+++.. ++.+.++||.| | .+..||...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~--~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS--PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc--ccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC
Confidence 44566666655 357788888764433222221 1234455552 56788889888 3 466677654
Q ss_pred CCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeEEEEE
Q 000697 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1114 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg-----~IrVWDl~t~~~-~v~~l~~~~~~~VtsL~~ 1187 (1348)
++ |..+......-...+ ++- -+|...++||.|| +|-.||..+.+- .+..+... ..+...
T Consensus 359 --~~------W~~~a~M~~~R~~~~--v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~----r~~~gv 423 (571)
T KOG4441|consen 359 --NQ------WTPVAPMNTKRSDFG--VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR----RSGHGV 423 (571)
T ss_pred --Cc------eeccCCccCccccce--eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc----eeeeEE
Confidence 22 223332222211211 111 1456667777775 477888877650 11112221 122222
Q ss_pred ecCCCCEEEEEeCCC------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-----EEEEE
Q 000697 1188 SQVHGGQLAAGFVDG------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-----IQFLD 1256 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~-----I~IWD 1256 (1348)
..-+|.+.++|+.|| +|..||..++.- .............. ++.. ++.+.+.|+.||. |..||
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g-~a~~---~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFG-VAVL---NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccce-EEEE---CCEEEEECCccCCCccceEEEEc
Confidence 233688888888665 577888887651 11112111112222 3332 3778888888873 77788
Q ss_pred cCCCCcceEEEe---cCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEE
Q 000697 1257 IRNHKDAYLTID---AHRGSLSALAVHRHAPIIASGSAKQL-----IKVFS 1299 (1348)
Q Consensus 1257 lr~~~~~v~t~~---~h~~~VtsLa~spdg~~LasgS~Dg~-----I~Vwd 1299 (1348)
..+.. ...+. .....+....+ ++.+.++|+.||. |..||
T Consensus 498 p~~~~--W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 498 PETNQ--WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred CCCCc--eeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcC
Confidence 87652 22222 12222222222 5678888887753 55555
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.22 E-value=5.9 Score=47.81 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=107.0
Q ss_pred CCCEEEEEe-CCCeEEEEeccCCCCceeEEeeeecccCCC-CcccccceEEEEecCCCeEEEE-E-CC----CeEEEEEC
Q 000697 1093 DVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYAS-G-EV----SSIMLWDL 1164 (1348)
Q Consensus 1093 d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~v~ws~~~~~Ll~g-g-~D----g~IrVWDl 1164 (1348)
+.++|+..+ ..+.|.|.|+.+...++++...+..-.-+. ...... -.+..-++++.++++ | .+ |-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P-HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP-HTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE-EEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC-ceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 456777777 678899999987677777774332200010 011110 012333566677776 2 22 56888898
Q ss_pred CCCceeeeeecCCCC--CCeEEEEEecCCCCEEEEEeC--------------------CCeEEEEECCCCCeeeEeecCC
Q 000697 1165 EKEQQMVNPIPSSSD--CSISALTASQVHGGQLAAGFV--------------------DGSVRLYDVRTPDMLVCSTRPH 1222 (1348)
Q Consensus 1165 ~t~~~~v~~l~~~~~--~~VtsL~~~s~dg~~LvsGs~--------------------DG~VrvwDlr~~~~~v~~~~~~ 1222 (1348)
++.+ ....+..... ..-..+ ++++..+.+++..- ..++.+||+.+.+ ..+++..-
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDf-w~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg 241 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDF-WYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLG 241 (461)
T ss_dssp TT---EEEE--SB-TT------E-EEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-
T ss_pred cccc-ccceeccCCCCCCCCCCe-EEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecC
Confidence 8877 6666664322 224566 78888888888642 3589999999988 66666322
Q ss_pred CCCCCCeEEEEEecCCCCCE-EEEEECCCcEEEEEc-CCCC---cceEEEecC-----------------CCCeEEEEEe
Q 000697 1223 TQQVERVVGISFQPGLDPAK-IVSASQAGDIQFLDI-RNHK---DAYLTIDAH-----------------RGSLSALAVH 1280 (1348)
Q Consensus 1223 ~~h~~~I~sl~~sp~~~g~~-LaSgs~DG~I~IWDl-r~~~---~~v~t~~~h-----------------~~~VtsLa~s 1280 (1348)
........|.|..+-...+ ++.+.-.+.|..|-- ..+. +.+.++... ..-|+.+.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1123455666643311333 444434445555543 3221 222222211 2347899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCC----ceEEEEeccCCccc--------c-cccCCeEEEEEeCCCCEEEEEE
Q 000697 1281 RHAPIIASGS-AKQLIKVFSLEG----EQLGTIRYHHPSFM--------A-QKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1281 pdg~~LasgS-~Dg~I~Vwd~~g----~~l~~i~~~h~~f~--------~-~~~~~Vtslafspdg~~Latgs 1339 (1348)
-|.++|...+ .+|.|+.||++. +.+.++.- -..+. + .-.+...-+..|-||+.|...+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l-GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL-GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE--BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE-CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999877655 589999999653 34444332 11000 0 1112335677888887776553
No 401
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.075 Score=64.92 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc-CCce
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVFSL-EGEQ 1304 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vt-sLa~spdg~~LasgS~Dg~I~Vwd~-~g~~ 1304 (1348)
..|..+.|+|. -..+|.+..+|.|-+..+. . +.+.++..|...++ +++|.|||++||.|-.||+|++.|. .|..
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 56888999999 9999999999999999888 4 67778887777777 9999999999999999999999994 4555
Q ss_pred EEEEeccCCcccccccCCeEEEEEe
Q 000697 1305 LGTIRYHHPSFMAQKIGSVNCLTFH 1329 (1348)
Q Consensus 1305 l~~i~~~h~~f~~~~~~~Vtslafs 1329 (1348)
+..... .....|+++-|.
T Consensus 97 l~~~~~-------s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLF-------SVETDISKGIWD 114 (665)
T ss_pred eecccc-------ccccchheeecc
Confidence 555211 012467777775
No 402
>PHA02713 hypothetical protein; Provisional
Probab=95.09 E-value=1.2 Score=56.69 Aligned_cols=219 Identities=9% Similarity=0.019 Sum_probs=105.4
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------CeEEEEeccCCCCceeEEeeeecccCCC
Q 000697 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1348)
Q Consensus 1058 ~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------G~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1131 (1348)
.+..||..+++....-.... + ..-.+++. .++.+.++||.+ ..+..||..+ +. |..+....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~-r~~~~~a~---l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~------W~~~~~m~ 339 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-H-IINYASAI---VDNEIIIAGGYNFNNPSLNKVYKINIEN--KI------HVELPPMI 339 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-c-ccceEEEE---ECCEEEEEcCCCCCCCccceEEEEECCC--Ce------EeeCCCCc
Confidence 56778887664322111111 0 11122333 266777777754 2466777654 22 22222222
Q ss_pred CcccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCceee--eeecCCCCCCeEEEEEecCCCCEEEEEeCCC--
Q 000697 1132 PGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1202 (1348)
Q Consensus 1132 ~~V~si~~~v~ws~~~~~Ll~gg~Dg-----~IrVWDl~t~~~~v--~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG-- 1202 (1348)
.+.... .++. -++...+.||.++ .+..||..+.+ -. ..++..... . +++. -+|.+.+.|+.++
T Consensus 340 ~~R~~~--~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~-~-~~~~--~~g~IYviGG~~~~~ 411 (557)
T PHA02713 340 KNRCRF--SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSS-Y-GMCV--LDQYIYIIGGRTEHI 411 (557)
T ss_pred chhhce--eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCccccc-c-cEEE--ECCEEEEEeCCCccc
Confidence 111111 1111 1455556666543 48889988765 22 222221111 1 1212 2677888887653
Q ss_pred ---------------------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEE
Q 000697 1203 ---------------------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFL 1255 (1348)
Q Consensus 1203 ---------------------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG------~I~IW 1255 (1348)
.|..||.++.+ -. ............ +++.. ++.+.+.|+.++ .|..|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~-~v~~m~~~r~~~-~~~~~---~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WE-TLPNFWTGTIRP-GVVSH---KDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCe-Ee-ecCCCCcccccC-cEEEE---CCEEEEEeCCCCCCccceeEEEe
Confidence 47778887664 11 111111101111 22222 267777777542 36789
Q ss_pred EcCC-CC-cceEEEecCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCceE
Q 000697 1256 DIRN-HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ--LIKVFSLEGEQL 1305 (1348)
Q Consensus 1256 Dlr~-~~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg--~I~Vwd~~g~~l 1305 (1348)
|..+ .. ..+..+.........+.+ ++++.++|+.|+ .+..||.....-
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 9886 31 222333322222222222 678999999888 667777554433
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.06 E-value=0.049 Score=59.25 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=88.9
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000697 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~ 1228 (1348)
.+.+.+.+|.|+-++++..+...+.-.. +.+.......+..+++|+.+|.|.+|............... ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc---ccc
Confidence 4555678888888888765411111111 22221223346789999999999999887332111111111 122
Q ss_pred eEE-EEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-CCeEEEEEeCCCCEEEEE--eCCCcEEEEEcC
Q 000697 1229 VVG-ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASG--SAKQLIKVFSLE 1301 (1348)
Q Consensus 1229 I~s-l~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-~~VtsLa~spdg~~Lasg--S~Dg~I~Vwd~~ 1301 (1348)
|.+ +..-. .+.+..+++.||.|+.|++.-. +.+.....|. .++..+.....+++++.. |.|..++.|++.
T Consensus 104 i~~~Ip~~~--~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 104 IDLGIPNGR--DSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceecccccc--ccceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 222 22222 2568999999999999999876 5565556666 566677777777788877 888888888853
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.24 Score=64.15 Aligned_cols=191 Identities=9% Similarity=0.012 Sum_probs=118.4
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC--------CCce-------eeeeecCCCCCCeEEEEEecCCCCEEEE--EeCCCe
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLE--------KEQQ-------MVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGS 1203 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~--------t~~~-------~v~~l~~~~~~~VtsL~~~s~dg~~Lvs--Gs~DG~ 1203 (1348)
++.++.-+.+++++..+.+.|+-.. ...+ ...++..+...+|..+ ...+|+...++ .+.+-.
T Consensus 47 la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~-v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 47 LAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIF-VCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEE-EeccCCceEEEEEecCCce
Confidence 3334455566666666655554322 1110 1133444455556666 33345544333 333447
Q ss_pred EEEEECCCCCeee-------EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEE
Q 000697 1204 VRLYDVRTPDMLV-------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA 1276 (1348)
Q Consensus 1204 VrvwDlr~~~~~v-------~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vts 1276 (1348)
|..||+++-.... +.-+..........++.|+|. -....+.+..|+.|++..+......+..+. .....++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta 203 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA 203 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence 8999998533111 111111122345668888887 455677788899999988875433333333 3456899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEE
Q 000697 1277 LAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1338 (1348)
Q Consensus 1277 La~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latg 1338 (1348)
++|+|.|+.++.|-..|++.-|...++....+.+ .... ....|.++.|-....+|+.-
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp~~---e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PPVE---ENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EEeccccceeeEecCCCeEEEeecccceeecccC-CCcC---CCcceeEEEEecceeEEEEe
Confidence 9999999999999999999999988887777765 3322 14789999998887777654
No 405
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.92 E-value=0.33 Score=58.95 Aligned_cols=118 Identities=19% Similarity=0.020 Sum_probs=85.2
Q ss_pred hhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000697 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 545 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~ 624 (1348)
...++..|.+.+ +..|+=++--|+.+= ...+...++..|+ +++|.||...+-++|..-.+
T Consensus 88 ~~~L~~~L~d~~--~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGP--EGLCAGIQAALGWLG-----------GRQAEPWLEPLLA-------ASEPPGRAIGLAALGAHRHD 147 (410)
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHhcCC-----------chHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccC
Confidence 455666776554 357777776776552 4556778888888 88999999888888873222
Q ss_pred chHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCC
Q 000697 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 704 (1348)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 704 (1348)
..+.+..+|+|.+|.||++++-+||.+-... ....|.....|.
T Consensus 148 ------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-------------------------a~~~L~~al~d~ 190 (410)
T TIGR02270 148 ------------PGPALEAALTHEDALVRAAALRALGELPRRL-------------------------SESTLRLYLRDS 190 (410)
T ss_pred ------------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-------------------------chHHHHHHHcCC
Confidence 2346888999999999999999999875210 011244557899
Q ss_pred ChhhHHHHHHHHHHH
Q 000697 705 SPLVRAEVAVALARF 719 (1348)
Q Consensus 705 sp~VR~e~~~~ls~~ 719 (1348)
+|.||..++..++.+
T Consensus 191 ~~~VR~aA~~al~~l 205 (410)
T TIGR02270 191 DPEVRFAALEAGLLA 205 (410)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998765
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.039 Score=60.03 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCC
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~ 1226 (1348)
+..+++|+.+|.|.+|...... ............|.++...-.++.+..+++.||.||.|++...+.. ... .+|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-g~~---g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG-AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-GYV---GQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccc-hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee-eee---cccc
Confidence 5789999999999999987544 2333222222235555233344568899999999999999877733 222 1233
Q ss_pred -CCeEEEEEecCCCCCEEEEE--ECCCcEEEEEcCC
Q 000697 1227 -ERVVGISFQPGLDPAKIVSA--SQAGDIQFLDIRN 1259 (1348)
Q Consensus 1227 -~~I~sl~~sp~~~g~~LaSg--s~DG~I~IWDlr~ 1259 (1348)
..+......-. ++.++++ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~s--d~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGS--DEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecC--CceEEeeccccchhhhhcchhh
Confidence 34444444443 5666666 6677777777654
No 407
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.79 E-value=0.28 Score=54.77 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch-HHHHhhhccCchh
Q 000697 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRADAPA 639 (1348)
Q Consensus 561 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~-~~~~~~~~~~~~~ 639 (1348)
.-.-+|.+++.+....... ..-+-..++..++..+. ++..-+|+.+.-||-.++.... ..+ -...
T Consensus 69 v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~ 134 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPK------ILLE 134 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--H------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHH------HHHH
Confidence 3345666777776655554 22235566777888888 7889999999999999998755 222 1144
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
.+...+++.+|.||..++-.|..++...... ..... .. ..=..+...+...++|+.|.||+.+...+..+
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~-------~~~l~-~~--~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWGSD-------SSVLQ-KS--AFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG---H--HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHccch-------Hhhhc-cc--chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999553200 00000 00 00134556677788999999999999999888
Q ss_pred HHhcc
Q 000697 720 AFGHK 724 (1348)
Q Consensus 720 ~~~~~ 724 (1348)
...|.
T Consensus 205 ~~~~~ 209 (228)
T PF12348_consen 205 YSHFP 209 (228)
T ss_dssp HHHH-
T ss_pred HHHCC
Confidence 65553
No 408
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.71 E-value=0.028 Score=42.02 Aligned_cols=25 Identities=44% Similarity=0.756 Sum_probs=22.4
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.++.+++|++|+||.+++.+|+.+.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.37 Score=58.01 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-----EEEEEeCCCeEEEEeccCCCCce
Q 000697 1045 PFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-----LLLVASCNGNIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1045 pdg~-~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-----~L~tgs~DG~IrIWdl~~~~~~~ 1118 (1348)
.+.+ +|.++.....++--|++.|+.+..++.+. .|+-+.+.|...+. .-+.|-+|..|.-||.+.. ++.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-GKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEeccccc-Ccc
Confidence 3444 34456666778888999999999999888 37666763322222 2345667778888998752 222
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEE
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsG 1198 (1348)
.+. ...+|.- .+...+.+.-...+++|++|+.+|.||+||. .+.+....+++- +.+|+.+ -...+|.++++.
T Consensus 418 kl~----~~q~kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hV-dvtadGKwil~T 489 (644)
T KOG2395|consen 418 KLA----VVQSKQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHV-DVTADGKWILAT 489 (644)
T ss_pred eee----eeecccc-ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeE-EeeccCcEEEEe
Confidence 222 1122211 1111111222346899999999999999997 433133344543 4569999 566789888866
Q ss_pred eCCCeEEEEECC
Q 000697 1199 FVDGSVRLYDVR 1210 (1348)
Q Consensus 1199 s~DG~VrvwDlr 1210 (1348)
+ +..+.+-|+.
T Consensus 490 c-~tyLlLi~t~ 500 (644)
T KOG2395|consen 490 C-KTYLLLIDTL 500 (644)
T ss_pred c-ccEEEEEEEe
Confidence 5 5566676665
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=5.1 Score=45.70 Aligned_cols=202 Identities=10% Similarity=0.158 Sum_probs=125.4
Q ss_pred ccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 000697 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1348)
Q Consensus 1127 l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vrv 1206 (1348)
+.+....+.+ +.|+|+...|++..+...-.||=...++ .+.+++-..-..--.+.+. .+|++.++--.++.+.+
T Consensus 81 i~g~~~nvS~----LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSS----LTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccc----eeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEEe-cCCEEEEEehhcceEEE
Confidence 3444445665 9999999999999988877777666777 8888774322223344222 34555555556788888
Q ss_pred EECCCCCeeeEe------ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcce--EEEecC-------C
Q 000697 1207 YDVRTPDMLVCS------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAH-------R 1271 (1348)
Q Consensus 1207 wDlr~~~~~v~~------~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v--~t~~~h-------~ 1271 (1348)
+.+......... +......+...-.++|.|. ...|..+-+-.-+.||.+......+ .....+ -
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 877654322111 1111112566789999998 6666666666667777766432111 111111 1
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccc--cccCCeEEEEEeCCCCEEEE
Q 000697 1272 GSLSALAVHRH-APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAA 1337 (1348)
Q Consensus 1272 ~~VtsLa~spd-g~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~--~~~~~Vtslafspdg~~Lat 1337 (1348)
..|+++.|++. +.+++-+.+++.+.-.|.+|+.+..+.. +.++.+ .....--+++..++|.+.++
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 25778889875 5577777778888888999998877766 554432 33344566777777754443
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.68 E-value=1 Score=57.40 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=92.0
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeee--eecCC-CCCCeEEEEEecCCCCEEEEEeCCCe-----EEEEECCC
Q 000697 1146 QSGYLYASGEV------SSIMLWDLEKEQQMVN--PIPSS-SDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRT 1211 (1348)
Q Consensus 1146 ~~~~Ll~gg~D------g~IrVWDl~t~~~~v~--~l~~~-~~~~VtsL~~~s~dg~~LvsGs~DG~-----VrvwDlr~ 1211 (1348)
++...++||.| ..+..||.++.+ -.. .+... ....+..+ +|.+.++|+.||. |..||.++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCC
Confidence 35566667777 357788888776 333 22211 12112222 6889999999974 77888887
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEEEcCCCC-cceEEEecCCCCeEEEEEeCCCC
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP 1284 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG------~I~IWDlr~~~-~~v~t~~~h~~~VtsLa~spdg~ 1284 (1348)
.+-. ...... ....+.....- +|.+.++|+.+| +|..||..+.. ..+..+..-..... ++.- ++.
T Consensus 406 ~~W~--~va~m~---~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~ 477 (571)
T KOG4441|consen 406 NKWT--PVAPML---TRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGK 477 (571)
T ss_pred Cccc--ccCCCC---cceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCE
Confidence 6511 111111 12222222222 378888888654 46788877652 11111111112222 2222 567
Q ss_pred EEEEEeCCCc-----EEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1285 IIASGSAKQL-----IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1285 ~LasgS~Dg~-----I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
+.+.||.|+. |..||...+.-..+.. - ....+.+..... +++..++|+.||.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m----~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAP-M----TSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEccc-C----ccccccccEEEE--CCEEEEEecccCc
Confidence 8888887763 6778865544444322 1 111122222222 5667778877764
No 412
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.66 E-value=0.13 Score=64.21 Aligned_cols=209 Identities=19% Similarity=0.223 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
-++-+-+++-+++++|-.+ ...++.|.++||+.++.. +|-+.++..|.++=..-+..-+++..|..|..=+
T Consensus 308 ~~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr---~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~ 378 (690)
T KOG1243|consen 308 ASDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDR---QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGF 378 (690)
T ss_pred chhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcch---HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhc
Confidence 3466778888888998888 557899999999998754 4446667777766444444567889999999877
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
.+.+. -+|.-..-+++.+.--. ++. -++.+++..+...-. |..+.+|+|..+|||+.-......+
T Consensus 379 ~DTn~--~Lre~Tlksm~~La~kL--~~~-~Ln~Ellr~~ar~q~-------d~~~~irtntticlgki~~~l~~~~--- 443 (690)
T KOG1243|consen 379 LDTNA--TLREQTLKSMAVLAPKL--SKR-NLNGELLRYLARLQP-------DEHGGIRTNTTICLGKIAPHLAASV--- 443 (690)
T ss_pred ccCCH--HHHHHHHHHHHHHHhhh--chh-hhcHHHHHHHHhhCc-------cccCcccccceeeecccccccchhh---
Confidence 66553 55553333333332111 122 356666655555444 7889999999999999876543333
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEV 712 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~ 712 (1348)
........+...+.|+-+--|.|.+++|.....-+ +..+ +-..+...+..+.-|....||..+
T Consensus 444 R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--------------~~~~---va~kIlp~l~pl~vd~e~~vr~~a 506 (690)
T KOG1243|consen 444 RKRVLASAFTRALKDPFVPARKAGVLALAATQEYF--------------DQSE---VANKILPSLVPLTVDPEKTVRDTA 506 (690)
T ss_pred hccccchhhhhhhcCCCCCchhhhhHHHhhccccc--------------chhh---hhhhccccccccccCcccchhhHH
Confidence 12222345666899999999999999998765221 1111 112233444556679999999999
Q ss_pred HHHHHHHHHh
Q 000697 713 AVALARFAFG 722 (1348)
Q Consensus 713 ~~~ls~~~~~ 722 (1348)
-.++..|...
T Consensus 507 ~~~i~~fl~k 516 (690)
T KOG1243|consen 507 EKAIRQFLEK 516 (690)
T ss_pred HHHHHHHHhh
Confidence 8888777644
No 413
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.12 Score=57.28 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=67.7
Q ss_pred hchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc--CCCHHHHHHHHHHHHhh
Q 000697 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS--EPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~--D~sP~VRaa~v~aL~~~ 663 (1348)
...++.+.+-|. ++++++|-=++++||||-.. ..++ .|.+.|. -..||||-+|..|||.+
T Consensus 186 EeaI~al~~~l~-------~~SalfrhEvAfVfGQl~s~----------~ai~-~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 186 EEAINALIDGLA-------DDSALFRHEVAFVFGQLQSP----------AAIP-SLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHhcc-------cchHHHHHHHHHHHhhccch----------hhhH-HHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 345666777777 67999999999999999754 2222 3555554 34899999999999987
Q ss_pred cccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 664 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 664 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
-+. .....|-..++|.+++||++..++|+-.-
T Consensus 248 a~e-------------------------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 248 ADE-------------------------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cCH-------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 611 11234556789999999999999998543
No 414
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.37 Score=60.48 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=96.2
Q ss_pred hhHHhccCCchhhh-hHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHH
Q 000697 505 YVLKLLQTTTPELR-QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEAC 583 (1348)
Q Consensus 505 yvlklL~s~a~elr-~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~ 583 (1348)
-..++|.|....+| --+=+|++.|...+- .+ ..|.-.++.....+ .|.|.+.-+-|=+.-+.-+. .+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS------~~Fp~VVKNVaskn--~EVKkLVyvYLlrYAEeqpd---LA 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VS------LLFPAVVKNVASKN--IEVKKLVYVYLLRYAEEQPD---LA 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHhhccC--HHHHHHHHHHHHHHhhcCCC---ce
Confidence 34578887744333 345789988887753 22 12223333344444 47777655444333222111 11
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
-=-++.+-.-|. ||+|++|+|++=.|+-+ |--.|-.-+...+-++..|++|.||+.++.|+-.+
T Consensus 107 --LLSIntfQk~L~-------DpN~LiRasALRvlSsI-------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 107 --LLSINTFQKALK-------DPNQLIRASALRVLSSI-------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred --eeeHHHHHhhhc-------CCcHHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 111345556677 99999999999888733 21112222222344677899999999999999999
Q ss_pred cccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 000697 664 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 717 (1348)
Q Consensus 664 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls 717 (1348)
-+-.. ++ ...+...+=.++.|.+|+|--.++.++-
T Consensus 171 YsLd~---------------e~----k~qL~e~I~~LLaD~splVvgsAv~AF~ 205 (968)
T KOG1060|consen 171 YSLDP---------------EQ----KDQLEEVIKKLLADRSPLVVGSAVMAFE 205 (968)
T ss_pred hcCCh---------------hh----HHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 84321 11 1112222233558999999998888764
No 415
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.14 Score=62.73 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEeccC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1113 (1348)
..|.-+.|+|.-+++|++..+|.|.+.... .+.+.++..++ ..++ +++| .+||++|++|-.||+|++.|+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~---~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG---ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC---Cccceeeee--cCCCCEEEEEecCCeEEEEEccC
Confidence 568889999999999999999999999888 78888888666 5666 9999 89999999999999999999976
No 416
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.38 E-value=4.9 Score=49.31 Aligned_cols=182 Identities=17% Similarity=0.127 Sum_probs=101.3
Q ss_pred CeEEEEEEeeCCCCEEEEEe---CC-CeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CC
Q 000697 1082 GISKLCLVNELDVSLLLVAS---CN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EV 1156 (1348)
Q Consensus 1082 ~ItsL~f~ns~d~~~L~tgs---~D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~D 1156 (1348)
.+..-+| ++++..++-.+ .. ..+.++++.. +....+. ...++.. .-.|+|++..++.+. .|
T Consensus 194 ~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~---~~~g~~~-------~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 194 LILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVIL---NFNGNNG-------APAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceecccc--CcCCCceEEEEEecCCCceEEEEeccC--Cccceee---ccCCccC-------CccCCCCCCEEEEEECCC
Confidence 4445555 45555443321 22 4588888876 3333331 1222221 267899999887774 55
Q ss_pred Ce--EEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000697 1157 SS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1348)
Q Consensus 1157 g~--IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~D-G--~VrvwDlr~~~~~v~~~~~~~~h~~~I~s 1231 (1348)
|. |.++|+.+.. ..+ +... .+ +..--.++++|+.++..+.. | .|.++|...... .+.. .. + ..-..
T Consensus 260 g~~~iy~~dl~~~~-~~~-Lt~~-~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~-~--~~~~~ 330 (425)
T COG0823 260 GSPDIYLMDLDGKN-LPR-LTNG-FG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FS-G--GGNSN 330 (425)
T ss_pred CCccEEEEcCCCCc-cee-cccC-Cc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-cc-C--CCCcC
Confidence 55 6677887766 333 3322 21 33344678999988876653 4 366667666652 2221 11 1 11127
Q ss_pred EEEecCCCCCEEEEEEC-CCc--EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEe
Q 000697 1232 ISFQPGLDPAKIVSASQ-AGD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1290 (1348)
Q Consensus 1232 l~~sp~~~g~~LaSgs~-DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS 1290 (1348)
-.|+|+ |++|+..+. +|. |.+.|+.++.. ++.+. +......-+|.+++..+...+
T Consensus 331 p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 331 PVWSPD--GDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCC--CCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEec
Confidence 788999 888877764 344 66777766532 33332 333344556777877655443
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.32 E-value=25 Score=46.17 Aligned_cols=292 Identities=12% Similarity=0.082 Sum_probs=142.6
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC----CEEEEEeC
Q 000697 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV----SLLLVASC 1102 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~----~~L~tgs~ 1102 (1348)
+..|... ..++....+.+...++.++.++.+...+.+.+. +.....+. ....|.|+.+.|-+++ .++++|..
T Consensus 481 ~~~W~~p--~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~-~e~evaCLDisp~~d~~~~s~~~aVG~W 556 (1096)
T KOG1897|consen 481 RSEWRPP--GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKE-FEYEVACLDISPLGDAPNKSRLLAVGLW 556 (1096)
T ss_pred hhcccCC--CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeehe-ecceeEEEecccCCCCCCcceEEEEEee
Confidence 4556544 456666666666678888767777777777655 22222222 1257999998543333 37888877
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec-CCCCCC
Q 000697 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCS 1181 (1348)
Q Consensus 1103 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~-~~~~~~ 1181 (1348)
+..+.+--... ...... ....+-..--+++. ..++..+..+|+++..||.+.-|-+...+......+ .+-+..
T Consensus 557 s~~~~~l~~~p--d~~~~~---~~~l~~~~iPRSIl-~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~ 630 (1096)
T KOG1897|consen 557 SDISMILTFLP--DLILIT---HEQLSGEIIPRSIL-LTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQ 630 (1096)
T ss_pred cceEEEEEECC--Ccceee---eeccCCCccchhee-eEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCC
Confidence 76655543321 111111 11111111223332 356777788999999999987665443331122221 111111
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEE-EEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG-ISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~s-l~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
-..+..++..+..-+.+..|.-..+|.-+..- ..... .. ..+.. +.|+.+..+..++++. .+.+++..+..-
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL-v~spl-s~----kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i 703 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGKL-VYSPL-SL----KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEI 703 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCcE-EEecc-ch----HHhhhhcccccccCCceEEEec-CCceEEEEecch
Confidence 22333344444433344455555566544321 11111 11 11111 1222221244555554 456777776643
Q ss_pred C-cceEEEecCCCCeEEEEEeCCCCEEEEEeC-----------CCc---EEEEEcCCceEEEEeccCCcccccccCCeEE
Q 000697 1261 K-DAYLTIDAHRGSLSALAVHRHAPIIASGSA-----------KQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC 1325 (1348)
Q Consensus 1261 ~-~~v~t~~~h~~~VtsLa~spdg~~LasgS~-----------Dg~---I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vts 1325 (1348)
+ -.++++.- ......+++++....+++.+. ... ++++| .+....+.. |.--.......|.+
T Consensus 704 qkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD--~nTf~vl~~-hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 704 QKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD--QNTFEVLSS-HEFERNETALSIIS 779 (1096)
T ss_pred hhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec--CCceeEEee-ccccccceeeeeee
Confidence 2 23444443 345677888875555554432 122 33443 333334433 33111223345667
Q ss_pred EEEeCC-CCEEEEEE
Q 000697 1326 LTFHPY-QVLLAAGS 1339 (1348)
Q Consensus 1326 lafspd-g~~Latgs 1339 (1348)
+.|+.| +.+++.|.
T Consensus 780 ~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGT 794 (1096)
T ss_pred eeecCCCceEEEEEE
Confidence 779888 67777775
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.27 E-value=2.1 Score=51.53 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=110.8
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCC
Q 000697 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDC 1180 (1348)
Q Consensus 1102 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~ 1180 (1348)
.++.|-|+...+ .+..+...+++.+....+......-.+-..++...|+..| ....++-.|++.++ .+..+..+.+.
T Consensus 435 R~n~IGVFk~~d-e~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv 512 (776)
T COG5167 435 RGNSIGVFKNTD-EGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV 512 (776)
T ss_pred eCCeeeeEeccC-CcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccce-eeeEeecCCcc
Confidence 455677887655 2345555444444333222111112255566677776654 55678888999999 89899887654
Q ss_pred CeEEEEEecCC-------CCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCc
Q 000697 1181 SISALTASQVH-------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGD 1251 (1348)
Q Consensus 1181 ~VtsL~~~s~d-------g~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs~DG~ 1251 (1348)
| + .+.|. ...-+.|-.+..|.-.|.|-....+... .. +..++.-.|+.. ....+++.||..|.
T Consensus 513 -v--V-qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-es---KdY~tKn~Fss~~tTesGyIa~as~kGD 584 (776)
T COG5167 513 -V--V-QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ES---KDYKTKNKFSSGMTTESGYIAAASRKGD 584 (776)
T ss_pred -e--e-ecCCchhHHhcCccceEEeecccceEEecccccCCceeee-ee---hhccccccccccccccCceEEEecCCCc
Confidence 2 1 23332 2233446667777667877443222221 11 122222222221 12568999999999
Q ss_pred EEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 000697 1252 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1300 (1348)
Q Consensus 1252 I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~ 1300 (1348)
|++||--.. .....+.+-...|..+..+.+|+++++.+. ..+.+-|+
T Consensus 585 irLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 585 IRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 999996533 444556667778999999999997776654 46667774
No 419
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.11 E-value=0.091 Score=44.65 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL 621 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l 621 (1348)
|..|.-++.+|+.+....+.. ..-+..+++..+...|+ |+++.||..+|.+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~-------d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQ-------DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTT-------SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhcC
Confidence 467899999999976665553 33378889999999998 78889999999999975
No 420
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=0.75 Score=57.24 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=76.8
Q ss_pred HHHHHhccChhhhhhhhhccChhhhhhh----ccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCC
Q 000697 524 IWTKILALDKSCQVDLVKDGGHAYFIRF----LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGS 599 (1348)
Q Consensus 524 Iwa~il~~~~~~q~~l~k~~~~~yf~~~----L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~ 599 (1348)
.+|+|+...+ |.+.=. .+..+++.| +..++. --|--+|-+|+.+.++..+- -.-+..++.++++..|.
T Consensus 65 fla~fv~sl~--q~d~e~-DlV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~-- 136 (892)
T KOG2025|consen 65 FLARFVESLP--QLDKEE-DLVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK-- 136 (892)
T ss_pred HHHHHHHhhh--ccCchh-hHHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh--
Confidence 3456665544 322221 234444444 445554 56778899999998744331 11244555566667777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHH
Q 000697 600 MPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1348)
Q Consensus 600 ~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1348)
|..|-||-=+++||++|-++..+. +..+...+..++ +|||||||.+++..+.
T Consensus 137 -----Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 -----DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999999653331 234444565555 8999999999877654
No 421
>PHA02713 hypothetical protein; Provisional
Probab=93.92 E-value=1.2 Score=56.73 Aligned_cols=188 Identities=10% Similarity=0.088 Sum_probs=94.7
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-----eEEEEeccCC
Q 000697 1046 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQ 1114 (1348)
Q Consensus 1046 dg~~Latgs~d------g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~ 1114 (1348)
++...++||.+ ..+..||..+++-.. +..-..+........+ ++.+.+.||.+| .+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~- 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD- 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC-
Confidence 45666667643 346778877654321 1111101112222222 677778888764 477888765
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC-----------------------CeEEEEECCCCcee-
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-----------------------SSIMLWDLEKEQQM- 1170 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D-----------------------g~IrVWDl~t~~~~- 1170 (1348)
+. |..+..........+. +.. ++...+.||.+ ..+..||..+.+ -
T Consensus 377 -~~------W~~~~~mp~~r~~~~~-~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~ 445 (557)
T PHA02713 377 -DK------WKMLPDMPIALSSYGM-CVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WE 445 (557)
T ss_pred -Ce------EEECCCCCcccccccE-EEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-Ee
Confidence 22 2223322222222111 222 34555556543 247788887765 2
Q ss_pred -eeeecCCCCCCeEEEEEecCCCCEEEEEeCCC------eEEEEECCC-CCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000697 1171 -VNPIPSSSDCSISALTASQVHGGQLAAGFVDG------SVRLYDVRT-PDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1348)
Q Consensus 1171 -v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG------~VrvwDlr~-~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~ 1242 (1348)
+..+...... .+++. .++.+.+.|+.++ .|..||..+ .+ -.. .............+.+ ++.+
T Consensus 446 ~v~~m~~~r~~--~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~-~~~m~~~r~~~~~~~~----~~~i 515 (557)
T PHA02713 446 TLPNFWTGTIR--PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WEL-ITTTESRLSALHTILH----DNTI 515 (557)
T ss_pred ecCCCCccccc--CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeE-ccccCcccccceeEEE----CCEE
Confidence 2222221111 12212 2577778887642 467899887 44 211 1122211222223332 3789
Q ss_pred EEEEECCC--cEEEEEcCCC
Q 000697 1243 IVSASQAG--DIQFLDIRNH 1260 (1348)
Q Consensus 1243 LaSgs~DG--~I~IWDlr~~ 1260 (1348)
.++|+.+| .+..||..+.
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEeeecceeehhhcCcccc
Confidence 99999888 6778888765
No 422
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.91 E-value=0.47 Score=60.85 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHh
Q 000697 516 ELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH 595 (1348)
Q Consensus 516 elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~ 595 (1348)
+-+.-+=.|+|.+...+. -+ .++.-.++.....+ .|+|.++=+=|=..-+..|+-+..| .+.+.+=
T Consensus 35 ~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd--~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRD--VELKRLLYLYLERYAKLKPELALLA-----VNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhh
Confidence 344445677777666543 11 23334455555434 5999999888866655566322222 2233334
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCC
Q 000697 596 LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGV 675 (1348)
Q Consensus 596 l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~ 675 (1348)
|+ |++|++|..++=.|+.+=.. .+-..+...+-.+++|++|.||+.|++|+..+-....
T Consensus 101 l~-------d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------- 159 (757)
T COG5096 101 LQ-------DPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------- 159 (757)
T ss_pred cc-------CCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-------
Confidence 55 89999999998888876432 2334455578899999999999999999999984321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 676 EGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 676 ~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
.+--|.+....+-.++.|.+|.|-+.++.++.-+...
T Consensus 160 ----------~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 ----------DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----------hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1222333444555677899999999999988665444
No 423
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.88 E-value=4.6 Score=52.31 Aligned_cols=238 Identities=18% Similarity=0.154 Sum_probs=152.1
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCC-chhhhhHHHHHHHHHhccChhhhhhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVDL 539 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~-a~elr~~~~FIwa~il~~~~~~q~~l 539 (1348)
|.+|-+..+|..+.++.-++.+|-+. ....-++.+....+++|.++++|-+. ..+.. .-+-.++.-|+.++.+++.+
T Consensus 372 GlIPkLv~LL~d~~~~~val~iLy~L-S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaqlm 449 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFREVALKILYNL-SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQLM 449 (708)
T ss_pred CCcHHHHHHhCCCchHHHHHHHHHHh-ccCHhhHHHHhhcchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHHH
Confidence 78888889888888877677665543 34455667666778899999977543 33332 22333344467777766667
Q ss_pred hhccChhhhhhhccC---------------CCC------------------chHHHHHHHHHHHHHhcCC-cchhH--HH
Q 000697 540 VKDGGHAYFIRFLDS---------------MEA------------------YPEQRAMAAFVLAVIVDGH-RRGQE--AC 583 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~---------------~~~------------------~~~~r~~~afiLa~l~~~~-~~gq~--~~ 583 (1348)
++.+|.+-+++.... .+. ..+---+.+=|||.+-+-- +.-.| .+
T Consensus 450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred HhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 777776555433211 010 0111123444555553221 11122 23
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCC--HHHHHHHHHHHH
Q 000697 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ--PEVRASAVFSLG 661 (1348)
Q Consensus 584 ~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s--P~VRaa~v~aL~ 661 (1348)
-+.+++..+..+|... ...+.+..=+++.+|++..+..-|.. -.+.++...|+.+|+... -|.=--++|++.
T Consensus 530 ~~~~llp~L~~~L~~g-----~~~dDl~LE~Vi~~gtla~d~~~A~l-L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPG-----ASEDDLLLEVVILLGTLASDPECAPL-LAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HhCCHHHHHHHHhCCC-----CCChHHHHHHHHHHHHHHCCHHHHHH-HHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 3568888999988732 23456777788999999976555544 356777888999996554 677777899999
Q ss_pred hhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 662 TLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 662 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
+|+--. ++.+.+-.+..+...++.+..|..+.||+-.=..|..+.
T Consensus 604 ~ll~h~--------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 604 QLLFHE--------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHcCh--------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999321 223334345667788999999999999999988887655
No 424
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=7.8 Score=46.98 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=119.2
Q ss_pred CeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEecc
Q 000697 1037 GTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDY 1112 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~---dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~ 1112 (1348)
.+..++++++++.+.++.. ++++.+.|..+++.+.+..... .+ ..+++ .++++.++++. .++.|.+.|..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~---~P-~~~a~--~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN---TP-TGVAV--DPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC---Cc-ceEEE--CCCCCeEEEEecCCCeEEEEeCC
Confidence 6889999999998887765 6889999999988888866554 33 77888 78999777665 78899999964
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeee-ecCCCCCCeEEEEEe
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNP-IPSSSDCSISALTAS 1188 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~~-l~~~~~~~VtsL~~~ 1188 (1348)
. ..... .. ....-.+......+.+++++..+++.... +.+.+.|..++. .... ...... .-..+ ..
T Consensus 191 ~----~~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~-~~~~v-~~ 260 (381)
T COG3391 191 G----NSVVR-GS--VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGSG-APRGV-AV 260 (381)
T ss_pred C----cceec-cc--cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEeccccccC-CCCce-eE
Confidence 4 11110 00 00000011111237888999988887533 689999998887 4443 333332 23444 56
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000697 1189 QVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1348)
Q Consensus 1189 s~dg~~LvsGs~-DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~ 1237 (1348)
.|+|..+.+... .+.|.+.|..+.. ..........-...+..+++.+.
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDR-VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCc-eeeeecccccccccceeccceee
Confidence 788888887744 4899999998876 44443333222334566666554
No 425
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=20 Score=43.45 Aligned_cols=240 Identities=12% Similarity=0.165 Sum_probs=141.7
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEeccCC
Q 000697 1037 GTKTALLQPFSPIVVAADE-NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYDQ 1114 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~-dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl~~~ 1114 (1348)
.+..+...+++..+.+... ...+.+-+.............. ..-..+.. ++.+. ..++...++.|.+.|....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---~~p~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---VYPAGVAV--NPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---ccccceee--CCCCCeEEEecCCCCeEEEEcCccc
Confidence 5677888888865554442 2245555544222211111111 22345566 45666 4444555688999996441
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCC
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~---Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~d 1191 (1348)
.. .... ..+. ... .++++++++.++++.. ++.+.+.|..+.+ .......... + ..+ ..+++
T Consensus 107 ~~-~~~~-----~vG~--~P~----~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~-P-~~~-a~~p~ 170 (381)
T COG3391 107 TV-LGSI-----PVGL--GPV----GLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNT-P-TGV-AVDPD 170 (381)
T ss_pred ce-eeEe-----eecc--CCc----eEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCC-c-ceE-EECCC
Confidence 11 1100 1111 112 3888999999999854 6889999999888 7777555432 2 556 67788
Q ss_pred CCEEE-EEeCCCeEEEEECCCCCeeeEeecC--CCCCCCCeEEEEEecCCCCCEEEEEEC-C--CcEEEEEcCCCCcceE
Q 000697 1192 GGQLA-AGFVDGSVRLYDVRTPDMLVCSTRP--HTQQVERVVGISFQPGLDPAKIVSASQ-A--GDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1192 g~~Lv-sGs~DG~VrvwDlr~~~~~v~~~~~--~~~h~~~I~sl~~sp~~~g~~LaSgs~-D--G~I~IWDlr~~~~~v~ 1265 (1348)
|+.++ +-..++.|.+.|..... ..+ -.. ...-...-..+.++|+ |..+..... + +.+...|..++ ....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~-v~~-~~~~~~~~~~~~P~~i~v~~~--g~~~yV~~~~~~~~~v~~id~~~~-~v~~ 245 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNS-VVR-GSVGSLVGVGTGPAGIAVDPD--GNRVYVANDGSGSNNVLKIDTATG-NVTA 245 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcc-eec-cccccccccCCCCceEEECCC--CCEEEEEeccCCCceEEEEeCCCc-eEEE
Confidence 88554 44578999999977665 221 100 0111234567888998 665544443 3 58888898876 3333
Q ss_pred E-EecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 000697 1266 T-IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG 1302 (1348)
Q Consensus 1266 t-~~~h~~~VtsLa~spdg~~LasgS-~Dg~I~Vwd~~g 1302 (1348)
. ..........+.++|+|..+.+.. ..+.+.+.|...
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 3 221111456789999999887774 447888888443
No 426
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.24 Score=63.95 Aligned_cols=108 Identities=13% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CceE
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQL 1305 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~-g~~l 1305 (1348)
..+.+.+.. +..++.|+..|.|-..|.+..-.+...-..-.++|++++|+.+|++++.|-.+|.|.+||.. ++.+
T Consensus 90 ~~v~s~a~~----~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 90 AGVISSAIV----VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cceeeeeee----eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 344444443 56899999999999999885312222222336789999999999999999999999999964 5777
Q ss_pred EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCe
Q 000697 1306 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1343 (1348)
Q Consensus 1306 ~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~ 1343 (1348)
..+.. |. .....|-.+.+..++..+.++...|.
T Consensus 166 ~~i~e-~~----ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 KVITE-HG----APVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeee-cC----CccceEEEEEEeCCCcEEEEccCCCc
Confidence 76665 43 11223444444555566777766664
No 427
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.26 Score=61.76 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=108.7
Q ss_pred HHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh-hhhhhc
Q 000697 466 VLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ-VDLVKD 542 (1348)
Q Consensus 466 vLq~LlS~~--~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q-~~l~k~ 542 (1348)
+.++|-|.- -.+.|+.-+---|.-|.-+ --.||-|+|...+...|.|.. ||+. .+.+-..-| ..|++
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkL-VyvY--LlrYAEeqpdLALLS- 109 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKL-VYVY--LLRYAEEQPDLALLS- 109 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHH-HHHH--HHHHhhcCCCceeee-
Confidence 456677743 4445655322233233322 136999999999999998864 4544 122212222 12333
Q ss_pred cChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000697 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1348)
Q Consensus 543 ~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~ 622 (1348)
+++|.+-|.+++ ++.|+|+.=+|+-|= .-.+..-++-..-+... |+.|-||+-+++++-+|.
T Consensus 110 --IntfQk~L~DpN--~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~-------D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 110 --INTFQKALKDPN--QLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVT-------DPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred --HHHHHhhhcCCc--HHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhc-------CCcHHHHHHHHHhhHHHh
Confidence 689999998877 599999999998872 11122222222223334 899999999999999999
Q ss_pred ccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.--++-+. .+.+.+-.||+|.+|.|--++|+|+-...
T Consensus 172 sLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 172 SLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred cCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 76555443 34456678999999999999999988765
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=8.9 Score=43.85 Aligned_cols=169 Identities=9% Similarity=0.142 Sum_probs=110.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCC
Q 000697 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1115 (1348)
..+.++.|+|+.+.|.+..+...-.||=..+|+.+.++.-... .....+.|+ .++.+.++--.++.+.++.+....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYI--GGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--CChhHeEEe--cCCEEEEEehhcceEEEEEEcCCc
Confidence 3499999999999998888888888887778999988764321 245577884 577777777788888888875522
Q ss_pred CceeEEe---eeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-e-eeeecCCC------CCCeEE
Q 000697 1116 DKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-M-VNPIPSSS------DCSISA 1184 (1348)
Q Consensus 1116 ~~~~lvs---~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~-~-v~~l~~~~------~~~Vts 1184 (1348)
....... +.........+-.+ ++|++.++.++++-.-+-+.||.+..... . +.....+. -..|.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEG----lA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEG----LAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCCCcCcee----eecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 2111111 01111111333444 89999999999998777777776553320 0 00000110 012666
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1185 L~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
+.+....+.+++-+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 7666677888888989999888887755
No 429
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.72 E-value=0.092 Score=39.20 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.6
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 588 ~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
++..+++.++ |++|+||.+++.|||.+.+
T Consensus 1 llp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 3567888898 9999999999999999875
No 430
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.66 E-value=0.62 Score=51.99 Aligned_cols=185 Identities=22% Similarity=0.217 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhc
Q 000697 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 473 ~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 552 (1348)
+..|.|||.-|-.-++.+. .-++.|-.-+-...+|.=++|.+.. .|+. .-.+.....|
T Consensus 19 l~~r~rALf~Lr~l~~~~~-----------i~~i~ka~~d~s~llkhe~ay~LgQ------~~~~-----~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA-----------IKAITKAFIDDSALLKHELAYVLGQ------MQDE-----DAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCChHH-----------HHHHHHhcccchhhhccchhhhhhh------hccc-----hhhHHHHHHh
Confidence 5789999987666664433 3455555555455677777888732 2222 2344566777
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccc-------
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF------- 625 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~------- 625 (1348)
.+.+..|-.|-=++++|+.+- .....+++-++.+ ||..+||--+-+++.++=...
T Consensus 77 ~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~-------dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIK-------DPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred cccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhc-------CCccccchHHHHHHHHHHHhhccccccc
Confidence 776666778888999998885 3344555555555 777777777777777663110
Q ss_pred ---------------------------------hHHHH-hhhcc----CchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 626 ---------------------------------TEAQT-IGRRA----DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 626 ---------------------------------~~~~~-~~~~~----~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
+.-+. +.++. .+...|..-+.|+|++.|-++.|.||.+-+.-
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ 218 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA 218 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh
Confidence 00000 11111 11225666777888889998888888876321
Q ss_pred cCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 000697 668 FDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
.+ ..+...|.. .-..||||.|++.+|..+.
T Consensus 219 ------------------ai---~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 219 ------------------AI---PSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred ------------------hh---HHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 00 111122222 2346999999999998654
No 431
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.66 E-value=17 Score=42.65 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=115.4
Q ss_pred CCCC-EEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000697 1092 LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1092 ~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~ 1170 (1348)
++.. ++.+--..+.|.-|+..+ ++.+.. .+...+.+ ...-..++.|+++ ..| ++++|.+++. .
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~-------~~p~~~~~----~~~~d~~g~Lv~~-~~g-~~~~~~~~~~-~ 97 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPET--GKKRVF-------PSPGGFSS----GALIDAGGRLIAC-EHG-VRLLDPDTGG-K 97 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCc--CceEEE-------ECCCCccc----ceeecCCCeEEEE-ccc-cEEEeccCCc-e
Confidence 3444 444445567777777754 322221 11222222 2222344455544 333 5566665444 3
Q ss_pred eeeec----CCCCCCeEEEEEecCCCCEEEEEeC-----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000697 1171 VNPIP----SSSDCSISALTASQVHGGQLAAGFV-----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1348)
Q Consensus 1171 v~~l~----~~~~~~VtsL~~~s~dg~~LvsGs~-----------DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~s 1235 (1348)
+..+. ......-+.+ ...++|.+.++... -|.|+.+|. .+. ..+... ++-..-+.|+|+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~-~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~---~~~~~~NGla~S 171 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDG-VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLD---DDLTIPNGLAFS 171 (307)
T ss_pred eEEeccccCCCCcCCCCce-eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeec---CcEEecCceEEC
Confidence 22221 1111223344 34566665554333 134555554 222 333322 222456789999
Q ss_pred cCCCCCEEEEEEC-CCcEEEEEcCC--C---Cc-ceEEEecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCceEEE
Q 000697 1236 PGLDPAKIVSASQ-AGDIQFLDIRN--H---KD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQ-LIKVFSLEGEQLGT 1307 (1348)
Q Consensus 1236 p~~~g~~LaSgs~-DG~I~IWDlr~--~---~~-~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg-~I~Vwd~~g~~l~~ 1307 (1348)
|+ ++.++.+.. .+.|.-|++.. + .. ....+....+..-.++...+|.+.+++-.+| .|.+|+.+|+.+..
T Consensus 172 pD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 172 PD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred CC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEE
Confidence 99 766666654 47788887752 1 01 1222223456666788888898886555554 89999999999999
Q ss_pred EeccCCcccccccCCeEEEEEeC-CCCEEEEEE
Q 000697 1308 IRYHHPSFMAQKIGSVNCLTFHP-YQVLLAAGS 1339 (1348)
Q Consensus 1308 i~~~h~~f~~~~~~~Vtslafsp-dg~~Latgs 1339 (1348)
++. .. ..+++++|-- +.+.|...+
T Consensus 250 i~l-P~-------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 250 IKL-PV-------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEC-CC-------CCCccceEeCCCcCEEEEEe
Confidence 987 42 4678888853 444444433
No 432
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.62 E-value=0.62 Score=51.97 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhch-HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH-HHHhh---h
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGL-IHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE-AQTIG---R 633 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~-~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~-~~~~~---~ 633 (1348)
.-.|+-+.-+|-.+|+... ....+ ...+...++ +.+|.+|.-++-+|..++..... ..... .
T Consensus 108 ~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~-------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCS------YSPKILLEILSQGLK-------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 4677777778888886655 12233 666667777 88999999999999999988772 11111 1
Q ss_pred ccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 634 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
-..+...+..+++|+.|+||+++--++..|.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 1345567889999999999999988888886
No 433
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.60 E-value=0.12 Score=51.15 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000697 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1348)
Q Consensus 546 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~ 624 (1348)
+..+++|..++ .+..-+.+|.=|+.+++.||.|+..+-+.++-..+..+++ .++|+||--|++|+.+|+..
T Consensus 46 k~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 46 KKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHh
Confidence 35566665444 3788899999999999999999999999999999999999 88999999999999998753
No 434
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=0.53 Score=61.70 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=111.5
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh--hccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcch
Q 000697 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV--KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG 579 (1348)
Q Consensus 502 ifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~--k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~g 579 (1348)
+|+++-++|||+.--.|.-.+--++.|-.. |+.... =+..+...++.|++++ |.-|..||++++++--|+...
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcHH
Confidence 478888999988555554433344444432 332221 2556778888888877 599999999999999998765
Q ss_pred hHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh-hhhhhccCCCHHHHHHHHH
Q 000697 580 QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA-IYVPLLSEPQPEVRASAVF 658 (1348)
Q Consensus 580 q~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~-~l~~ll~D~sP~VRaa~v~ 658 (1348)
=.--....+...++..+.+ ..+|.|.+-++-||=.|.++.+...-..+=+.+.+ ++..|+..+.|.||..+|.
T Consensus 424 iqk~~~e~l~~aL~~~ld~------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDS------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHhccHHHHHHhcc------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3333455566666666663 56899999999999999988776655555555555 6777889999999999999
Q ss_pred HHHhhcccC
Q 000697 659 SLGTLLDIG 667 (1348)
Q Consensus 659 aL~~~i~~~ 667 (1348)
|+|.....-
T Consensus 498 aIasvA~AA 506 (1075)
T KOG2171|consen 498 AIASVADAA 506 (1075)
T ss_pred HHHHHHHHH
Confidence 999887543
No 435
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.40 E-value=0.27 Score=47.57 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh
Q 000697 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631 (1348)
Q Consensus 561 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~ 631 (1348)
.|.-+.=+||.+|-+.+..|....+.+.+..++..-.-+ +.+|.+|.|+++|+=.|++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356677789999999999999998888888887764421 779999999999999999999999874
No 436
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.35 E-value=0.37 Score=58.58 Aligned_cols=123 Identities=24% Similarity=0.205 Sum_probs=83.8
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
+...|+..|...+. ++.+..+++.|... . ....++.++..|. |+++.||..++-+||.+-.
T Consensus 55 a~~~L~~aL~~d~~-~ev~~~aa~al~~~---~--------~~~~~~~L~~~L~-------d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 55 ATELLVSALAEADE-PGRVACAALALLAQ---E--------DALDLRSVLAVLQ-------AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHHHhhCCC-hhHHHHHHHHHhcc---C--------ChHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCc
Confidence 34566667743332 56777666555222 0 1123788888888 7888899999999996542
Q ss_pred cchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1348)
. .+...|+.+|+|..|.||++++-+++..-.. -...++..+.|
T Consensus 116 ~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~--------------------------~~~~L~~~L~d 158 (410)
T TIGR02270 116 R-----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD--------------------------PGPALEAALTH 158 (410)
T ss_pred h-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------------------------hHHHHHHHhcC
Confidence 2 2234688999999999999999888864300 01235555679
Q ss_pred CChhhHHHHHHHHHHHHHh
Q 000697 704 GSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 704 ~sp~VR~e~~~~ls~~~~~ 722 (1348)
.+|.||++++..++++-..
T Consensus 159 ~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 159 EDALVRAAALRALGELPRR 177 (410)
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999999876543
No 437
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.12 E-value=1.3 Score=52.44 Aligned_cols=185 Identities=24% Similarity=0.279 Sum_probs=123.7
Q ss_pred CCchhhHHHHhhchhhHHH--HHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhh
Q 000697 460 PEQLPIVLQVLLSQCHRFR--ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1348)
Q Consensus 460 p~~lP~vLq~LlS~~~rlr--al~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~ 537 (1348)
+...+.++++|.+....+| |...|+.+= ..-.+|-..++|.+.....|..+++.+..+-
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 4678889999988644444 443322211 1234688889999888888888888442221
Q ss_pred hhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCC----------
Q 000697 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTE---------- 607 (1348)
Q Consensus 538 ~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~---------- 607 (1348)
.+..+..++..|.. +...-.|.-++..|+.+- ....+.-++..++ ++.
T Consensus 103 ---~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~-----------~~~a~~~l~~~l~-------~~~~~~a~~~~~~ 160 (335)
T COG1413 103 ---DPEAVPPLVELLEN-DENEGVRAAAARALGKLG-----------DERALDPLLEALQ-------DEDSGSAAAALDA 160 (335)
T ss_pred ---ChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcC-----------chhhhHHHHHHhc-------cchhhhhhhhccc
Confidence 12234556666664 222578999999998883 2333556666666 322
Q ss_pred H--HHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHH
Q 000697 608 P--LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDE 685 (1348)
Q Consensus 608 p--~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~ 685 (1348)
+ .+|..++-.|+.+-.. .....+..++.|....||.+++.+|+.+.+. .
T Consensus 161 ~~~~~r~~a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~-----------------~- 211 (335)
T COG1413 161 ALLDVRAAAAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSE-----------------N- 211 (335)
T ss_pred hHHHHHHHHHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc-----------------h-
Confidence 2 4777777777766532 2334688899999999999999999998722 0
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 000697 686 KIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1348)
Q Consensus 686 ~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 719 (1348)
..+...+.....|.+..||...+..++..
T Consensus 212 -----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 212 -----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred -----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 23345566778899999999999888764
No 438
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.05 E-value=6.1 Score=46.36 Aligned_cols=192 Identities=16% Similarity=0.089 Sum_probs=101.6
Q ss_pred EEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEee
Q 000697 1141 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg-~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~ 1219 (1348)
-.|.++.+.|+-.. ..+.|.-||..++. ...+..... +.++......+. |+++ .. .+.++|...+.......
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~--~~~~~~p~~--~~~~~~~d~~g~-Lv~~-~~-g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK--KRVFPSPGG--FSSGALIDAGGR-LIAC-EH-GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc--eEEEECCCC--cccceeecCCCe-EEEE-cc-ccEEEeccCCceeEEec
Confidence 34567777666664 67889999998775 333332222 455534444443 3333 33 35666765554211111
Q ss_pred cCCCC-CCCCeEEEEEecCCCCCEEEEEEC-----C----CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEE
Q 000697 1220 RPHTQ-QVERVVGISFQPGLDPAKIVSASQ-----A----GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1220 ~~~~~-h~~~I~sl~~sp~~~g~~LaSgs~-----D----G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~Lasg 1289 (1348)
....+ .....+.+.+.|+ |.+.++... . ..-.+|-+...+..++.+..+-..-+.|+||||++.|...
T Consensus 103 ~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 11111 1245667888888 776665443 0 0113444442224555555555566789999999877666
Q ss_pred -eCCCcEEEEEcC---CceE----EEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC-eEEEcC
Q 000697 1290 -SAKQLIKVFSLE---GEQL----GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA-CVSIHS 1348 (1348)
Q Consensus 1290 -S~Dg~I~Vwd~~---g~~l----~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg-~I~IWd 1348 (1348)
+..+.|.-|++. +..- ..... ...+..-.++...+|.+.+++..+| .|.+|+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-------~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFD-------EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEcc-------CCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 445778777754 2111 11111 1124445566666666665444443 565553
No 439
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.80 E-value=1.3 Score=53.77 Aligned_cols=168 Identities=14% Similarity=0.262 Sum_probs=106.6
Q ss_pred CHHHHHHHHhcCchhhhHHhccCCchh-hhhHHHHHHHHHhccC------hhhhhhhhhccChhhhhhhccC-CCCchHH
Q 000697 490 GPWAVDLALSVGIFPYVLKLLQTTTPE-LRQILVFIWTKILALD------KSCQVDLVKDGGHAYFIRFLDS-MEAYPEQ 561 (1348)
Q Consensus 490 ~~wAv~lal~~gifpyvlklL~s~a~e-lr~~~~FIwa~il~~~------~~~q~~l~k~~~~~yf~~~L~~-~~~~~~~ 561 (1348)
.+-++......+++|-++.+++....| .=.+++.|+--++... ..+...++..++.+ .+..|+. .=..+++
T Consensus 217 ~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL 295 (429)
T cd00256 217 NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDL 295 (429)
T ss_pred cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHH
Confidence 333555555678899999999865443 3346777776777642 12333444334433 3333431 1011233
Q ss_pred HHHHHHHHHHHhcCC---------------------cch-----------hHHHHhhchHHHHHHhhcCCCCCCCCCCHH
Q 000697 562 RAMAAFVLAVIVDGH---------------------RRG-----------QEACIEAGLIHVCLKHLQGSMPNDAQTEPL 609 (1348)
Q Consensus 562 r~~~afiLa~l~~~~---------------------~~g-----------q~~~~~~~~~~~~~~~l~~~~~~~~d~~p~ 609 (1348)
.....++-..+=+.+ |.. +..--+-.++.++.++|.. ..+|.
T Consensus 296 ~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~d~~ 369 (429)
T cd00256 296 TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SVDPI 369 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CCCcc
Confidence 333333332221111 111 1111123455677788853 45788
Q ss_pred HHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 610 FLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 610 ~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
.-+-+|.=+|.|+..+|++|.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999888889899999999999999999999999987
No 440
>PF05536 Neurochondrin: Neurochondrin
Probab=92.35 E-value=1.5 Score=55.58 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=127.2
Q ss_pred HHHHhhc--hhhHHHHHHHHHHHhcCCHH-HHHH-HH--hcCchhhhHHhccC-------CchhhhhHHHHHHHHHhccC
Q 000697 466 VLQVLLS--QCHRFRALVLLGRFLDMGPW-AVDL-AL--SVGIFPYVLKLLQT-------TTPELRQILVFIWTKILALD 532 (1348)
Q Consensus 466 vLq~LlS--~~~rlral~ll~~Fld~~~w-Av~l-al--~~gifpyvlklL~s-------~a~elr~~~~FIwa~il~~~ 532 (1348)
-+++|.+ ..+|+-+|.++.|+++-++- +... .+ ++| |.+.-+||.+ ++.+.+..++=|++.|+...
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 4566666 46999999999999998882 2211 22 345 7888899997 56788889999999999943
Q ss_pred hhhh-hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHH
Q 000697 533 KSCQ-VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611 (1348)
Q Consensus 533 ~~~q-~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R 611 (1348)
.... .+. .+-++.++.++..... .+.-.-|.-||..+. .++.|+.+.++.+.+..+++.+.+ .+...
T Consensus 89 ~~a~~~~~--~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--------~~~~~ 156 (543)
T PF05536_consen 89 ELASSPQM--VSRIPLLLEILSSSSD-LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--------QSFQM 156 (543)
T ss_pred hhhcCHHH--HHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--------CcchH
Confidence 2221 112 2346778888865443 467778888999998 999999999999999999999873 34444
Q ss_pred HHHHHHHHHhhccchHHHHhhhc---cCchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 612 QWLCLCLGKLWEDFTEAQTIGRR---ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 612 ~w~~l~Lg~l~~~~~~~~~~~~~---~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
--++-+|..++.....--|..-. ..+...+........-+-+-+++-.|+.|+...
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 45555555555443321111111 122234555555556677778888888888553
No 441
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.33 E-value=3.1 Score=53.84 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=119.7
Q ss_pred hhchhhHHHHHH-HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhh
Q 000697 470 LLSQCHRFRALV-LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1348)
Q Consensus 470 LlS~~~rlral~-ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf 548 (1348)
+..|.+=+|+.. +|.++-. .+....-.+..||+++.+++|++...|+.-.++=.+ +=|++++.++....+.+.....
T Consensus 259 ~~kQeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 259 IRKQEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHH
Confidence 445666666555 5444442 234445557889999999999988878754333333 4567778888899999999999
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH
Q 000697 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1348)
Q Consensus 549 ~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~ 628 (1348)
.++|+..+. +++..+.=+|--+. ..+..+..-++.|++..+..+|. + +..|..++-.|.++-.+ +++
T Consensus 337 ~kLl~s~~~--~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~-------d--~~~~~val~iLy~LS~d-d~~ 403 (708)
T PF05804_consen 337 LKLLPSENE--DLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLK-------D--PNFREVALKILYNLSMD-DEA 403 (708)
T ss_pred HHHhcCCCH--HHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhC-------C--CchHHHHHHHHHHhccC-Hhh
Confidence 999987653 56665555554443 34445667789999999999998 3 34566566666666654 566
Q ss_pred HHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHHhhc
Q 000697 629 QTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 629 ~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~~~i 664 (1348)
|.+....+....+..++ .-+.++|..+++-++-.+.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 66554444444566554 5567778777655555554
No 442
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.23 E-value=8.8 Score=43.77 Aligned_cols=233 Identities=16% Similarity=0.129 Sum_probs=141.2
Q ss_pred CCchhhHHHHhhc---hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000697 460 PEQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1348)
Q Consensus 460 p~~lP~vLq~LlS---~~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q 536 (1348)
|++|.-++.+|.+ +.-+-+|+..+++. ..-|-+....-..|+.+-+.++|.+|.++.|.-++-.+.- ++.....|
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N-ls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN-LSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh-cCCChhhH
Confidence 5788888888885 33566788888884 3446777777789999999999999998888655544443 34443333
Q ss_pred hhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000697 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1348)
Q Consensus 537 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l 616 (1348)
. -++.-+-..|-..+..+-..+.|.+=+- .|..+.- -...|.. + .+.+..++.+|. ..+..+|-=+.-
T Consensus 89 ~-~Ik~~i~~Vc~~~~s~~lns~~Q~agLr-lL~nLtv-~~~~~~~-l-~~~i~~ll~LL~-------~G~~~~k~~vLk 156 (254)
T PF04826_consen 89 E-QIKMYIPQVCEETVSSPLNSEVQLAGLR-LLTNLTV-TNDYHHM-L-ANYIPDLLSLLS-------SGSEKTKVQVLK 156 (254)
T ss_pred H-HHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHccCC-Ccchhhh-H-HhhHHHHHHHHH-------cCChHHHHHHHH
Confidence 2 3444333444444443333345533222 2222211 1222333 2 234556778888 667778877777
Q ss_pred HHHHhhccchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhccc---CcCCCCCCCCCCCCCchHH--H-HHH
Q 000697 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDI---GFDSCRDGVEGDEECDDDE--K-IRA 689 (1348)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~---~~~~~~~~~~~~~~~~~~~--~-~~~ 689 (1348)
+|..|=.+.+.++.. +...+...++.+++.. .-++.-.++..+..+-.. ....+. ..++..+. . .+.
T Consensus 157 ~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~-----~~~~~~~~L~~~~~e 230 (254)
T PF04826_consen 157 VLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV-----QDDFSEDSLFSLFGE 230 (254)
T ss_pred HHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec-----cccCCchhHHHHHcc
Confidence 888887776666654 4445777888888654 677777777777766422 111111 12222221 2 223
Q ss_pred HHHHHHHHhhhccCCChhhHHHH
Q 000697 690 EISIIRSLLTVVSDGSPLVRAEV 712 (1348)
Q Consensus 690 e~~~~~~ll~~~~D~sp~VR~e~ 712 (1348)
+..++.+|..+...+.|+||..+
T Consensus 231 ~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 231 SSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHHcCCCHHHhhhc
Confidence 44478889998899999999865
No 443
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.19 E-value=28 Score=46.06 Aligned_cols=121 Identities=7% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCC-----CeEEEEEEee--------------CCCCEEEEEeCCCeEE
Q 000697 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK-----GISKLCLVNE--------------LDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1047 g~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~-----~ItsL~f~ns--------------~d~~~L~tgs~DG~Ir 1107 (1348)
+..|.+++.++.|.-.|.++|+.+.++........ ....+.+... ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788888889999988888765432111 1233444211 1345788888999988
Q ss_pred EEeccCCCCceeEEee------ee-cccCCCC---cccccceEEEEecCCCeEEEEEC----------CCeEEEEECCCC
Q 000697 1108 IWKDYDQKDKQKLVTA------FS-SIQGHKP---GVRCSNVVVDWQQQSGYLYASGE----------VSSIMLWDLEKE 1167 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~------~~-~l~~h~~---~V~si~~~v~ws~~~~~Ll~gg~----------Dg~IrVWDl~t~ 1167 (1348)
-.|..+ ++...... ++ .+..... .+++..++ .++.+++|+. +|.|+-+|++++
T Consensus 274 ALDA~T--Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-----~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADT--GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-----AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCC--CCEEEEecCCCceeeecccCcCCCcccccccCCEE-----ECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 888766 43221100 00 0001110 11121111 2567777742 588999999999
Q ss_pred ceeeeeec
Q 000697 1168 QQMVNPIP 1175 (1348)
Q Consensus 1168 ~~~v~~l~ 1175 (1348)
+ .+-.+.
T Consensus 347 k-l~W~~~ 353 (764)
T TIGR03074 347 A-LVWAWD 353 (764)
T ss_pred c-EeeEEe
Confidence 9 666554
No 444
>PRK10115 protease 2; Provisional
Probab=91.99 E-value=52 Score=43.24 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=120.3
Q ss_pred CeEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-C-----Ce
Q 000697 1037 GTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-N-----GN 1105 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs-----~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-D-----G~ 1105 (1348)
.+..+.++|||++|+.+. +...|+|.|+.+|+.+...-... . ..++| .+|++.|+.+.. + ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~-~~~~w--~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----E-PSFVW--ANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----c-eEEEE--eeCCCEEEEEEecCCCCCCCE
Confidence 467788999999888654 23358888998775432211111 2 45788 567765554433 2 25
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCcccccceEEEE-ecCCCeEEEEE---CCCeEEEEECCC--CceeeeeecCCCC
Q 000697 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASG---EVSSIMLWDLEK--EQQMVNPIPSSSD 1179 (1348)
Q Consensus 1106 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~w-s~~~~~Ll~gg---~Dg~IrVWDl~t--~~~~v~~l~~~~~ 1179 (1348)
|..+++.+...+.+++ +.+...... + ..+ +.++.+++..+ .++.+.+++... +. ....+....+
T Consensus 201 v~~h~lgt~~~~d~lv-----~~e~~~~~~---~-~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 270 (686)
T PRK10115 201 VWRHTIGTPASQDELV-----YEEKDDTFY---V-SLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRKD 270 (686)
T ss_pred EEEEECCCChhHCeEE-----EeeCCCCEE---E-EEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCCC
Confidence 6667776532233333 222222111 1 233 33677766653 346789998532 22 2222222222
Q ss_pred CCeEEEEEecCCCCEEEEEeCC----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1180 CSISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1180 ~~VtsL~~~s~dg~~LvsGs~D----G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
. ...+ .... +.|..-+.. ..|...++.........+ ... ....|..+.+. . ...+++...+|.-+++
T Consensus 271 ~-~~~~--~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~-~~~~i~~~~~~-~--~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 271 H-EYSL--DHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPR-ENIMLEGFTLF-T--DWLVVEERQRGLTSLR 341 (686)
T ss_pred C-EEEE--EeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEE-CCC-CCCEEEEEEEE-C--CEEEEEEEeCCEEEEE
Confidence 2 3333 1222 333333322 234444554221111222 221 12367788876 3 5677777778876665
Q ss_pred EcCCCCcceEEEe-cCCCCeEEEEEe--CCCC-EEEEEeC---CCcEEEEEcCCceEEEEe
Q 000697 1256 DIRNHKDAYLTID-AHRGSLSALAVH--RHAP-IIASGSA---KQLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~-~h~~~VtsLa~s--pdg~-~LasgS~---Dg~I~Vwd~~g~~l~~i~ 1309 (1348)
-+......+..+. .....+..+.++ +++. ++++.++ -+.+..+|..+.....+.
T Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 342 QINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred EEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 5443222344433 222233434444 3333 4444332 356777886544444443
No 445
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.89 E-value=19 Score=43.58 Aligned_cols=232 Identities=11% Similarity=0.139 Sum_probs=101.6
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----cEEEEeeCCCCC-CCCe---EEEEEEeeCCCCEEEEEe--CC----CeEEEEe
Q 000697 1046 FSPIVVAAD-ENERIKIWNYEED----TLLNSFDNHDFP-DKGI---SKLCLVNELDVSLLLVAS--CN----GNIRIWK 1110 (1348)
Q Consensus 1046 dg~~Latgs-~dg~I~VWd~~t~----~~l~~~~~h~~~-~~~I---tsL~f~ns~d~~~L~tgs--~D----G~IrIWd 1110 (1348)
+.++|++.+ ..+.|.|.|+.+. +..+.++..... ...+ ..+.- -++|++++++= .+ |-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc--lp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC--LPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee--cCCccEEEEeccCCCCCCCCcEEEEc
Confidence 445777766 7889999998843 444555421100 0011 11111 25777887752 22 4566776
Q ss_pred ccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--------------------CCeEEEEECCCCcee
Q 000697 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------------------VSSIMLWDLEKEQQM 1170 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--------------------Dg~IrVWDl~t~~~~ 1170 (1348)
-++ .++...|..-.+... .++-+-|++..+.++++.. ...+.+||+.+.+ .
T Consensus 164 ~~t----f~v~g~We~~~~~~~----~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~ 234 (461)
T PF05694_consen 164 GET----FEVKGRWEKDRGPQP----FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-L 234 (461)
T ss_dssp TTT------EEEE--SB-TT----------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-E
T ss_pred Ccc----ccccceeccCCCCCC----CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-E
Confidence 543 344444433222222 2233777887777777532 3579999999999 8
Q ss_pred eeeecCCCCCC-eEEEEE-ecCCCCE-EEEEeCCCeEEEEEC-CCCCe---eeEeecCC--------------CCCCCCe
Q 000697 1171 VNPIPSSSDCS-ISALTA-SQVHGGQ-LAAGFVDGSVRLYDV-RTPDM---LVCSTRPH--------------TQQVERV 1229 (1348)
Q Consensus 1171 v~~l~~~~~~~-VtsL~~-~s~dg~~-LvsGs~DG~VrvwDl-r~~~~---~v~~~~~~--------------~~h~~~I 1229 (1348)
++++....+.. ...|.+ +.|+..+ |+.+...++|..|-. ..++- .+..+... ..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88887654431 333422 2333333 444444555655544 33220 11111000 0002347
Q ss_pred EEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCcceEEEecC------------------CCCeEEEEEeCCCCEEEEEe
Q 000697 1230 VGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH------------------RGSLSALAVHRHAPIIASGS 1290 (1348)
Q Consensus 1230 ~sl~~sp~~~g~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h------------------~~~VtsLa~spdg~~LasgS 1290 (1348)
+.|.++-+ .++|...+ ..|.|+.||+.....+..+-+.. .+....+..|-||+.|...+
T Consensus 315 tDI~iSlD--DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 315 TDILISLD--DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TT--S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeEEEccC--CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 89999998 77766555 68999999999765554433211 12346778888888766543
No 446
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=0.82 Score=56.53 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=96.1
Q ss_pred hhhhhhhhccChh----hhhhhccCCC-CchHHHHHHHHHHHHHhcCCcchhHHHHhhchH----HHHHHhhcCCCCCCC
Q 000697 534 SCQVDLVKDGGHA----YFIRFLDSME-AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLI----HVCLKHLQGSMPNDA 604 (1348)
Q Consensus 534 ~~q~~l~k~~~~~----yf~~~L~~~~-~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~----~~~~~~l~~~~~~~~ 604 (1348)
+.|..+.+-+.|. |.+.+|-... .....|+.+-++| +|.-.|.+--+..+.. .-|+.-|-
T Consensus 32 ~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlL----KNnvr~~~~~~~~~~~~yiKs~~l~~lg------- 100 (885)
T KOG2023|consen 32 NVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLL----KNNVRGHYNSIPSEVLDYIKSECLHGLG------- 100 (885)
T ss_pred HHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhH----hccccccccCCChHHHHHHHHHHHhhcc-------
Confidence 3444455544454 4444443221 1246688887766 6655554433333322 34566666
Q ss_pred CCCHHHHHHHHHHHHHhhccc----------------------------hHHHHhh------hcc--------Cchhhhh
Q 000697 605 QTEPLFLQWLCLCLGKLWEDF----------------------------TEAQTIG------RRA--------DAPAIYV 642 (1348)
Q Consensus 605 d~~p~~R~w~~l~Lg~l~~~~----------------------------~~~~~~~------~~~--------~~~~~l~ 642 (1348)
|++|++|+-.-+.++++.... ..-+.++ ++. -...+++
T Consensus 101 d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl 180 (885)
T KOG2023|consen 101 DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFL 180 (885)
T ss_pred CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHH
Confidence 777888887777776665321 0001111 111 0122777
Q ss_pred hhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 643 PLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 643 ~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
...++++|-.|+.++.++.+||-.... .=.++++ .....+..+.+|..|+|||.+-.++..+...
T Consensus 181 ~f~~h~spkiRs~A~~cvNq~i~~~~q--------------al~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 181 QFFKHPSPKIRSHAVGCVNQFIIIQTQ--------------ALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHhCCChhHHHHHHhhhhheeecCcH--------------HHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999944211 1012222 2445677788999999999998888776543
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.67 E-value=37 Score=40.90 Aligned_cols=212 Identities=17% Similarity=0.203 Sum_probs=111.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEE--eeCCCCE--EEEEe-CC---CeEEEEeccCCCC
Q 000697 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV--NELDVSL--LLVAS-CN---GNIRIWKDYDQKD 1116 (1348)
Q Consensus 1045 pdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~--ns~d~~~--L~tgs-~D---G~IrIWdl~~~~~ 1116 (1348)
|...+++....++-+.+||++ |+.+..+... ++.-+... ..-++.. |++++ .+ ..|++|.+....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 445588888889999999998 7777777533 33333321 1123332 44444 32 4799999865333
Q ss_pred ceeEEeee-ecccCCCCcccccceEEEEecCCC--eEEEEECCCeEEEEECC---CCc---eeeeeecCCCCCCeEEEEE
Q 000697 1117 KQKLVTAF-SSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLE---KEQ---QMVNPIPSSSDCSISALTA 1187 (1348)
Q Consensus 1117 ~~~lvs~~-~~l~~h~~~V~si~~~v~ws~~~~--~Ll~gg~Dg~IrVWDl~---t~~---~~v~~l~~~~~~~VtsL~~ 1187 (1348)
....+... ..+......+.. +|+--++..+ +.++.+.+|.+..|-+. .+. ..++++...+ .+-.+ .
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yG--lcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGC-V 214 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYG--LCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGC-V 214 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEE--EEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEE-E
T ss_pred cceEcCCCCccccccccccee--eEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEE-E
Confidence 33222110 001111112333 3333344333 56666889988888664 221 2567776643 36777 4
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcEEEEEcCCCC
Q 000697 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDIQFLDIRNHK 1261 (1348)
Q Consensus 1188 ~s~dg~~LvsGs~DG~VrvwDlr~~~~----~v~~~~~~~~h~~~I~sl~~sp~--~~g~~LaSgs~DG~I~IWDlr~~~ 1261 (1348)
.+.....|+.|-++.-|.-|+...... .+... .-.+....|-.|++-.. +.|.+|+|.-.+++..+||.....
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 445666888899999899998873321 12111 11123467888888543 123455555567889999988543
Q ss_pred cceEEEe
Q 000697 1262 DAYLTID 1268 (1348)
Q Consensus 1262 ~~v~t~~ 1268 (1348)
..+..|.
T Consensus 294 ~~~g~f~ 300 (381)
T PF02333_consen 294 AYVGSFR 300 (381)
T ss_dssp -EEEEEE
T ss_pred cccceEE
Confidence 4444443
No 448
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.58 E-value=0.47 Score=39.22 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL 1069 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~ 1069 (1348)
...|.+++|+|..++||.|..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 4544
No 449
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.54 E-value=30 Score=39.53 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=110.5
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000697 1030 WDTRFEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1348)
Q Consensus 1030 Wd~~~~~~I~sl~fspdg~~Latgs~dg--~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1107 (1348)
..+....-...+.|..+|.++-+.+.-| .|+.+|+++++.+....-... ---..++.. ++.+..-.-.+|...
T Consensus 39 ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~---~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 39 YPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL---GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE---TTEEEEEESSSSEEE
T ss_pred CCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE---CCEEEEEEecCCeEE
Confidence 3333345577888977888777777655 699999999988776654330 112344442 445555566789999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC----CCeE
Q 000697 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD----CSIS 1183 (1348)
Q Consensus 1108 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~----~~Vt 1183 (1348)
+||..+ .+.+..+. +. ..-+. ++ .++..|+.+.....|+.+|..+.+ .+..+....+ ..++
T Consensus 114 ~yd~~t----l~~~~~~~-y~---~EGWG----Lt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 114 VYDPNT----LKKIGTFP-YP---GEGWG----LT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp EEETTT----TEEEEEEE--S---SS--E----EE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EE
T ss_pred EEcccc----ceEEEEEe-cC---CcceE----EE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcE
Confidence 999855 23332221 22 23344 33 468888888888899999998877 6665543211 1255
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecC---------CC---CCCCCeEEEEEecCCCCCEEEEE
Q 000697 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---------HT---QQVERVVGISFQPGLDPAKIVSA 1246 (1348)
Q Consensus 1184 sL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~---------~~---~h~~~I~sl~~sp~~~g~~LaSg 1246 (1348)
-+.+. +|.+.+=.-....|...|..+++ +...+.. .. ....-.+.|+++|. .+++++||
T Consensus 179 ELE~i--~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-~~~l~vTG 249 (264)
T PF05096_consen 179 ELEYI--NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-TDRLFVTG 249 (264)
T ss_dssp EEEEE--TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred eEEEE--cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-CCEEEEEe
Confidence 56544 45555545555667777877776 3332210 00 11356889999998 56667776
No 450
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=2.2 Score=54.13 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccC-hhhhhhhhhccChhhhhhhc
Q 000697 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALD-KSCQVDLVKDGGHAYFIRFL 552 (1348)
Q Consensus 474 ~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~-~~~q~~l~k~~~~~yf~~~L 552 (1348)
..|.-|+.-+-..+-+| ..++ +.||=|+|..|+-.-|+|.| ++...+.-+-- |..+..++ +.|++=-
T Consensus 28 ~kr~~a~kkvIa~Mt~G---~DvS---slF~dvvk~~~T~dlelKKl-vyLYl~nYa~~~P~~a~~av-----nt~~kD~ 95 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVG---KDVS---SLFPDVVKCMQTRDLELKKL-VYLYLMNYAKGKPDLAILAV-----NTFLKDC 95 (734)
T ss_pred hhHHHHHHHHHhcCccC---cchH---hhhHHHHhhcccCCchHHHH-HHHHHHHhhccCchHHHhhh-----hhhhccC
Confidence 34445555444455455 2222 56999999999888899987 55554444432 33322221 2222222
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000697 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1348)
Q Consensus 553 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 632 (1348)
.+..|+.|.++.=-++.+ ....+-..+.+=|...++ |..|.+|..+++|..+|.....+ ++
T Consensus 96 --~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~-------d~~~yvRktaa~~vakl~~~~~~---~~ 156 (734)
T KOG1061|consen 96 --EDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLK-------DDDPYVRKTAAVCVAKLFDIDPD---LV 156 (734)
T ss_pred --CCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHhhcCChh---hc
Confidence 233468887765333322 222234455566677787 88999999999999999976544 66
Q ss_pred hccCchhhhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
...+..+.|-.++.|.+|+|=|.++-||.-+....
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 77888889999999999999999999999998554
No 451
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.25 E-value=0.67 Score=59.08 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000697 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1348)
Q Consensus 559 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1348)
+..|+-+.+-||.+|--+.. +-..++..+...|+. ....-+|-=.++++|-||..|.. .++..++
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~------~~~~aiRnNiV~am~D~C~~YTa----m~d~YiP 1009 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEY------NTAHAIRNNIVLAMGDICSSYTA----MTDRYIP 1009 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHh------hhHHHHhcceeeeehhhHHHHHH----HHHHhhH
Confidence 78899888899998833322 334456677777774 44677899999999999987743 1334444
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 000697 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1348)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~ 718 (1348)
++...|.|++|.||+-.++.|+++++.+. +...-.+-...+..+-|.++-+|.-+-+.++.
T Consensus 1010 -~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~------------------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1010 -MIAASLCDPSVIVRRQTIILLARLLQFGI------------------VKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred -HHHHHhcCchHHHHHHHHHHHHHHHhhhh------------------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 88899999999999999999999995421 11112222233333459999999999999999
Q ss_pred HHHh-----cchhHHHHHHhh
Q 000697 719 FAFG-----HKQHLKSIAAAY 734 (1348)
Q Consensus 719 ~~~~-----~~~~f~~~a~~~ 734 (1348)
++.. +..+|+..-+..
T Consensus 1071 vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1071 VLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHhhcCccchHHHHHHHHHHH
Confidence 8876 445566654443
No 452
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.22 E-value=44 Score=40.89 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEE-EEEeCC-----------------CCEE-E
Q 000697 1227 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRH-----------------APII-A 1287 (1348)
Q Consensus 1227 ~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~Vts-La~spd-----------------g~~L-a 1287 (1348)
..+.+++.+|. +++.++...-|.|.++|+..+ ..++.+++.++.=.. +..... ..+| +
T Consensus 308 R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPS--GRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCC--CCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 45788999999 899888888899999999987 778888776542111 111100 1122 2
Q ss_pred EEeCCCcEEEEEc-CCceEEEEec
Q 000697 1288 SGSAKQLIKVFSL-EGEQLGTIRY 1310 (1348)
Q Consensus 1288 sgS~Dg~I~Vwd~-~g~~l~~i~~ 1310 (1348)
-.-.-|.|.||++ .|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 3455678888884 5666666554
No 453
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.13 E-value=0.54 Score=38.88 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceE
Q 000697 1271 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1305 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l 1305 (1348)
...|.+++|+|...+||.|+.+|.|.+|.++++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 45699999999999999999999999999887654
No 454
>PHA03098 kelch-like protein; Provisional
Probab=91.09 E-value=13 Score=47.17 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=88.2
Q ss_pred CCCEEEEEECCC------cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-----CeEEEEeccCC
Q 000697 1046 FSPIVVAADENE------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIRIWKDYDQ 1114 (1348)
Q Consensus 1046 dg~~Latgs~dg------~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~IrIWdl~~~ 1114 (1348)
++..++.|+.++ .+..||..+++... +.....+......+.+ ++.+.+.||.+ ..+..||..+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~- 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE- 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC-
Confidence 455666666432 46777877665422 2211111122223333 67777778765 2466777654
Q ss_pred CCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC--C----CeEEEEECCCCceeee--eecCCCCCCeEEEE
Q 000697 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--V----SSIMLWDLEKEQQMVN--PIPSSSDCSISALT 1186 (1348)
Q Consensus 1115 ~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--D----g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~ 1186 (1348)
++... ......+.... .++. -++..++.||. + +.+..||..+.+ -.. .++..... .++.
T Consensus 368 -~~W~~------~~~lp~~r~~~--~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~--~~~~ 434 (534)
T PHA03098 368 -SKWRE------EPPLIFPRYNP--CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYG--GCAI 434 (534)
T ss_pred -Cceee------CCCcCcCCccc--eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccC--ceEE
Confidence 32222 22111111111 1111 13444555552 1 458899988765 221 22211111 1221
Q ss_pred EecCCCCEEEEEeCCC--------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcEE
Q 000697 1187 ASQVHGGQLAAGFVDG--------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDIQ 1253 (1348)
Q Consensus 1187 ~~s~dg~~LvsGs~DG--------~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-----G~I~ 1253 (1348)
. .++.+++.|+.++ .+.+||..+.+ -.. .............+.+ + +..++.|+.+ +.|.
T Consensus 435 ~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~-~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 435 Y--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTE-LSSLNFPRINASLCIF--N--NKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred E--ECCEEEEECCccCCCCCcccceEEEecCCCCc-eee-CCCCCcccccceEEEE--C--CEEEEEcCCcCCcccceeE
Confidence 2 2566777776532 38889988765 111 1111111111112222 3 6777777654 4678
Q ss_pred EEEcCCC
Q 000697 1254 FLDIRNH 1260 (1348)
Q Consensus 1254 IWDlr~~ 1260 (1348)
+||..+.
T Consensus 507 ~yd~~~~ 513 (534)
T PHA03098 507 VYDDKTN 513 (534)
T ss_pred EEeCCCC
Confidence 8887754
No 455
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.98 E-value=3.8 Score=50.31 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=77.3
Q ss_pred CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc--EEEEEcCCCCcceEEEecCCCCeEEEEE
Q 000697 1202 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD--IQFLDIRNHKDAYLTIDAHRGSLSALAV 1279 (1348)
Q Consensus 1202 G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~--I~IWDlr~~~~~v~t~~~h~~~VtsLa~ 1279 (1348)
..+.++|+.+++... .. ... +.-..-+|+|+ +..++++...||. |.++|+... . ...+....+.-+.=.|
T Consensus 218 ~~i~~~~l~~g~~~~-i~-~~~---g~~~~P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~-~-~~~Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPV-IL-NFN---GNNGAPAFSPD-GSKLAFSSSRDGSPDIYLMDLDGK-N-LPRLTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccce-ee-ccC---CccCCccCCCC-CCEEEEEECCCCCccEEEEcCCCC-c-ceecccCCccccCccC
Confidence 459999999887332 22 222 34446689999 3445556667776 555566654 2 3334433333346679
Q ss_pred eCCCCEEEEEeC-CC--cEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1280 HRHAPIIASGSA-KQ--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1280 spdg~~LasgS~-Dg--~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
+|+|+.++-.++ .| .|.+++.+|.....+.. .. +.-..-.|+|+|.+++..+.
T Consensus 290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~-------~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SG-------GGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cC-------CCCcCccCCCCCCEEEEEec
Confidence 999997776544 34 46666788887776665 32 12226788999999887764
No 456
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.84 E-value=35 Score=39.51 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=109.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC------CCceeeeeecCCC----CCCeEEEEEecCCC------------CEEEEE
Q 000697 1141 VDWQQQSGYLYASGEVSSIMLWDLE------KEQQMVNPIPSSS----DCSISALTASQVHG------------GQLAAG 1198 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg~IrVWDl~------t~~~~v~~l~~~~----~~~VtsL~~~s~dg------------~~LvsG 1198 (1348)
++++|.+..-++....+...+||.. ..+..+.+++... ....+.+. ++... ..|+.+
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiV-fN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQV-FNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEE-EeCCCceEEcCCCcccceeEEEE
Confidence 6778877666665677899999987 2222455655321 12356663 33211 347788
Q ss_pred eCCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEEcCCCCcce-EEEecC--
Q 000697 1199 FVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAY-LTIDAH-- 1270 (1348)
Q Consensus 1199 s~DG~VrvwDlr~~~~----~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSg-s~DG~I~IWDlr~~~~~v-~t~~~h-- 1270 (1348)
++||+|.-|...-... ....+... ....-...+++-....+.+|..+ -.+|+|.+||-.-....+ ..+...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 9999999998643321 11122111 11123345665533224555544 467999999876431100 011110
Q ss_pred ---CC-----------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCC-----
Q 000697 1271 ---RG-----------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY----- 1331 (1348)
Q Consensus 1271 ---~~-----------~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspd----- 1331 (1348)
-. .|+-..-.+++.-=+.|..-|.|-+||.+|+.++++.. . ..-..-+.|+..|-
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as--~----g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS--S----GRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc--C----CcccCCceeeeChhhhCCC
Confidence 00 01111112222222333445789999999999998854 2 12355677777553
Q ss_pred -CCEEEEEECCCeEEEcC
Q 000697 1332 -QVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1332 -g~~Latgs~Dg~I~IWd 1348 (1348)
+.+|+---.||+|..||
T Consensus 260 sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCCeEEeecCCceeEEec
Confidence 46666666699999987
No 457
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=11 Score=42.69 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=87.1
Q ss_pred EEecCCCeEEEEECC-----CeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEE-----------
Q 000697 1142 DWQQQSGYLYASGEV-----SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVR----------- 1205 (1348)
Q Consensus 1142 ~ws~~~~~Ll~gg~D-----g~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~Vr----------- 1205 (1348)
.|++++.+|+++-+| |.|-|||.+.+-+.+-++.++.-. -..+ .+..||+.++.+. |-|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG-pHev-~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG-PHEV-TLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC-ccee-EEecCCcEEEEeC--CceecccccCccccc
Confidence 578999999998433 789999998665467777776544 3455 4557898888753 3333
Q ss_pred ---------EEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE----EEEEcCCCCcceEEEecC--
Q 000697 1206 ---------LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI----QFLDIRNHKDAYLTIDAH-- 1270 (1348)
Q Consensus 1206 ---------vwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I----~IWDlr~~~~~v~t~~~h-- 1270 (1348)
+.|..+++-+.+..-....+.-.|..++..++ |..++-+-..|.- -+--....++++.-+...
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee 273 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE 273 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH
Confidence 33333333111110010123345777777766 6655544333210 000000111233332211
Q ss_pred -----CCCeEEEEEeCCCCEEEEEeCCC-cEEEEE-cCCceEEE
Q 000697 1271 -----RGSLSALAVHRHAPIIASGSAKQ-LIKVFS-LEGEQLGT 1307 (1348)
Q Consensus 1271 -----~~~VtsLa~spdg~~LasgS~Dg-~I~Vwd-~~g~~l~~ 1307 (1348)
...|-+++.+.+..+++..|-.| ...+|| .+|..+..
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 23577888887766666655544 567899 45665544
No 458
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.68 E-value=40 Score=39.50 Aligned_cols=276 Identities=14% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEe--eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 000697 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSF--DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1348)
Q Consensus 1034 ~~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~--~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1110 (1348)
....+..|.|.....-.++|. .+. |+...+| +.=... ....+..-...++.| . +...+++ +..|.| +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f--~-~~~g~iv-G~~g~l--l~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISF--D-GNEGWIV-GEPGLL--LH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEE--E-TTEEEEE-EETTEE--EE
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEe--c-CCceEEE-cCCceE--EE
Confidence 346899999996556666665 553 4544443 211111 111111134667777 2 2334444 455543 33
Q ss_pred ccCCCCceeEEeeeeccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEec
Q 000697 1111 DYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1348)
Q Consensus 1111 l~~~~~~~~lvs~~~~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s 1189 (1348)
..+.....+.+. +. ........ +.... .+....++..|.|+.= .+.++ .=+.+.......+..+ ...
T Consensus 86 T~DgG~tW~~v~----l~~~lpgs~~~----i~~l~-~~~~~l~~~~G~iy~T-~DgG~-tW~~~~~~~~gs~~~~-~r~ 153 (302)
T PF14870_consen 86 TTDGGKTWERVP----LSSKLPGSPFG----ITALG-DGSAELAGDRGAIYRT-TDGGK-TWQAVVSETSGSINDI-TRS 153 (302)
T ss_dssp ESSTTSS-EE--------TT-SS-EEE----EEEEE-TTEEEEEETT--EEEE-SSTTS-SEEEEE-S----EEEE-EE-
T ss_pred ecCCCCCcEEee----cCCCCCCCeeE----EEEcC-CCcEEEEcCCCcEEEe-CCCCC-CeeEcccCCcceeEeE-EEC
Confidence 333222222220 11 01111111 22222 3344445555654432 22222 1122222223347777 566
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec
Q 000697 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1269 (1348)
Q Consensus 1190 ~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~ 1269 (1348)
++|.+++++..-....-||--...-..... .....|.++.|.|+ +...+.+ ..|.|++=+... ...++..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~---~~~~w~~ 223 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNR----NSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPD---DGETWSE 223 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TT---EEEEE--
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEcc----CccceehhceecCC--CCEEEEe-CCcEEEEccCCC---Ccccccc
Confidence 888888777655555677755332111111 12378999999998 6665544 888888877221 1222221
Q ss_pred -------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCC
Q 000697 1270 -------HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1342 (1348)
Q Consensus 1270 -------h~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg 1342 (1348)
..-.+..+++.+++.+.|+|+. |.+.+=.-.|+.=...+. -. .-.+.+..+.|....+-++.| .||
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~-~~----~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRV-GE----NVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GG-GT----TSSS---EEEEEETTEEEEE--STT
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECcc-cc----CCCCceEEEEEcCCCceEEEC-CCc
Confidence 2234789999999888887764 444332233544444332 11 112467888997766555554 788
Q ss_pred eEEEc
Q 000697 1343 CVSIH 1347 (1348)
Q Consensus 1343 ~I~IW 1347 (1348)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87665
No 459
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=1 Score=56.93 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=99.9
Q ss_pred ChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000697 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1348)
Q Consensus 544 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~ 623 (1348)
+|+=+++..+..+. |+|.||=+=|...-...|..+..|++.- +.++. |++|++|..++=-+|.+.-
T Consensus 50 lF~dvvk~~~T~dl--elKKlvyLYl~nYa~~~P~~a~~avnt~--------~kD~~----d~np~iR~lAlrtm~~l~v 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL--ELKKLVYLYLMNYAKGKPDLAILAVNTF--------LKDCE----DPNPLIRALALRTMGCLRV 115 (734)
T ss_pred hhHHHHhhcccCCc--hHHHHHHHHHHHhhccCchHHHhhhhhh--------hccCC----CCCHHHHHHHhhceeeEee
Confidence 45556666666665 9999998888666666666665544332 22221 8899999877666665553
Q ss_pred cchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 000697 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1348)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1348)
+ .+-+.+.+-|..+++|..|.||+.+++....+-....+.+ .+..+...|-.+..|
T Consensus 116 ~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~-----------------~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 116 D-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV-----------------EDSGLVDALKDLLSD 171 (734)
T ss_pred h-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc-----------------cccchhHHHHHHhcC
Confidence 3 1334566678999999999999999999999874433222 133445556667779
Q ss_pred CChhhHHHHHHHHHHHHHhcc
Q 000697 704 GSPLVRAEVAVALARFAFGHK 724 (1348)
Q Consensus 704 ~sp~VR~e~~~~ls~~~~~~~ 724 (1348)
.+|+|-..++-+++-+.....
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCC
Confidence 999999999999988776653
No 460
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.42 E-value=33 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEC--CCCC----eeeEeecCCCCC-CCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000697 1183 SALTASQVHGGQLAAGFVDGSVRLYDV--RTPD----MLVCSTRPHTQQ-VERVVGISFQPGLDPAKIVSASQAGDIQFL 1255 (1348)
Q Consensus 1183 tsL~~~s~dg~~LvsGs~DG~VrvwDl--r~~~----~~v~~~~~~~~h-~~~I~sl~~sp~~~g~~LaSgs~DG~I~IW 1255 (1348)
+.++|......+.++-+.+-+|.-||. .++. ..+..++..+.. .-.--.+++.-. |...++.-..|+|...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEEE
Confidence 345444333344556677788888883 3332 111111111000 111223444444 8888888889999999
Q ss_pred EcCCCCcceEEEecCCCCeEEEEEeC
Q 000697 1256 DIRNHKDAYLTIDAHRGSLSALAVHR 1281 (1348)
Q Consensus 1256 Dlr~~~~~v~t~~~h~~~VtsLa~sp 1281 (1348)
|..++ +.+.++.-....|++++|--
T Consensus 239 dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCC-cEEEEEEcCCCceEEEEecC
Confidence 99998 78888888888999999964
No 461
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.33 E-value=4.3 Score=48.12 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=103.2
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCc----hhhhHHhcc-CCchhhhhHHHHHHHHHhccChhh
Q 000697 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGI----FPYVLKLLQ-TTTPELRQILVFIWTKILALDKSC 535 (1348)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~Fld~~~wAv~lal~~gi----fpyvlklL~-s~a~elr~~~~FIwa~il~~~~~~ 535 (1348)
+.+|-...+|.+..+.+|-..+ | +|.... .|.++++|+ +...-.|.-+++.+.++-.- .+
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~---~----------aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~a 138 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAA---D----------ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE--RA 138 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH---H----------HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--hh
Confidence 5677777878887776665554 2 343322 567778888 46556676666666555432 22
Q ss_pred hhhhhhccChhhhhhhccCCC--------Cch--HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCC
Q 000697 536 QVDLVKDGGHAYFIRFLDSME--------AYP--EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQ 605 (1348)
Q Consensus 536 q~~l~k~~~~~yf~~~L~~~~--------~~~--~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d 605 (1348)
... .+..|++.. ..+ ..|..++..|+.+- .......+..++. +
T Consensus 139 ~~~---------l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~-------~ 191 (335)
T COG1413 139 LDP---------LLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLE-------D 191 (335)
T ss_pred hHH---------HHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHh-------C
Confidence 221 222333222 001 45777777776663 4456777888888 7
Q ss_pred CCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 606 TEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 606 ~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+...+|.+++.+||++.... ..+...+...+.|++..||.+++.+||..-
T Consensus 192 ~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 192 EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 78899999999999998875 334457889999999999999999999875
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=20 Score=45.78 Aligned_cols=244 Identities=14% Similarity=0.121 Sum_probs=117.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcccc
Q 000697 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1136 (1348)
Q Consensus 1057 g~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1136 (1348)
-.|+||++. |..+.++--.. +.+-.+.| + +...|++...+|++.||++... ..+.. -.........|..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~---~~lI~mgW--s-~~eeLI~v~k~g~v~Vy~~~ge--~ie~~--svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH---GELIGMGW--S-DDEELICVQKDGTVHVYGLLGE--FIESN--SVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC---CCeeeecc--c-CCceEEEEeccceEEEeecchh--hhccc--ccccccccCceeE
Confidence 458888875 66666654444 47888888 3 5667778889999999998541 11100 0001111222222
Q ss_pred cceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEecCCCCEEEEEeCCCe--EEEEECCC
Q 000697 1137 SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGS--VRLYDVRT 1211 (1348)
Q Consensus 1137 i~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~---~~~~~VtsL~~~s~dg~~LvsGs~DG~--VrvwDlr~ 1211 (1348)
+-.|+ +|..+-..++..+.+-+..... ..+++. .... -+|-+.+.++.+....-..+-. ..++-...
T Consensus 133 ---c~~f~--~GVavlt~~g~v~~i~~~~~~~--~~~~~diP~~~~~-~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~ 204 (829)
T KOG2280|consen 133 ---CRFFH--NGVAVLTVSGQVILINGVEEPK--LRKMPDIPYNELP-KSCWTVFQPHRQSTILLDVDVAVGLHICQVEE 204 (829)
T ss_pred ---EEEec--CceEEEecCCcEEEEcCCCcch--hhhCCCCCCccCC-CcceeEecCCCcceeEEeechhhhhcccceec
Confidence 23333 4444444444444454544432 333322 1111 1233223332221111111100 01111111
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEe--cCCCCeEEEEEeCCCCEEEEE
Q 000697 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASG 1289 (1348)
Q Consensus 1212 ~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~--~h~~~VtsLa~spdg~~Lasg 1289 (1348)
....... ...-.+.+..+.++|+ +++|+-=..+|.|.+-++... +....+. .|. .--.++|.-+...++
T Consensus 205 ~~~q~~~---~~~~~~~~~ki~VS~n--~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~-~p~qm~WcgndaVvl-- 275 (829)
T KOG2280|consen 205 SRVQLHA---LSWPNSSVVKISVSPN--RRFLALYTETGKIWVVSIDLS-QILCEFNCTDHD-PPKQMAWCGNDAVVL-- 275 (829)
T ss_pred ccccccc---cCCCCceEEEEEEcCC--cceEEEEecCCcEEEEecchh-hhhhccCCCCCC-chHhceeecCCceEE--
Confidence 1101111 1111256888999998 999999999999999988765 4555554 222 222566654442222
Q ss_pred eCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEE
Q 000697 1290 SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1290 S~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs 1339 (1348)
+.+..+.+..-.|..+.-+.. ++ +. +.--+||-.+++.+
T Consensus 276 ~~e~~l~lvgp~gd~V~f~yd-~t---------~~-l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 276 SWEVNLMLVGPPGDSVQFYYD-ET---------AI-LSAEVDGVRIITST 314 (829)
T ss_pred EEeeeEEEEcCCCCccccccC-CC---------ce-eeeccCeeEEeccc
Confidence 223334444444555444333 22 11 55555665555543
No 463
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.09 E-value=1.8 Score=52.83 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=78.9
Q ss_pred ccChhhhhhhhhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHH
Q 000697 530 ALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPL 609 (1348)
Q Consensus 530 ~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~ 609 (1348)
..||.| .+++. +.+.|.++.+.+++. --|--++=+||.+.+..++--.. +-.++.+++.+.+- |-.|-
T Consensus 80 ~~dpeg-~~~V~-~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~-------DRE~~ 147 (885)
T COG5218 80 PDDPEG-EELVA-GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLF-------DREKA 147 (885)
T ss_pred CCChhh-hHHHH-HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHh-------cchHH
Confidence 346666 45553 456677777777765 67778888999999887774433 44556667777776 77899
Q ss_pred HHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhc-cCCCHHHHHHHHHHHH
Q 000697 610 FLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1348)
Q Consensus 610 ~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1348)
||.=++.||.++-+.-...+. .+...|..++ +|||.|||.+++.-+.
T Consensus 148 VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 148 VRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 999999999999754322221 1222344444 8999999998876553
No 464
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.02 E-value=6.2 Score=49.60 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhh-hhhhccChhhhhhhcc
Q 000697 476 RFRALVLLGRFLDMGP-WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV-DLVKDGGHAYFIRFLD 553 (1348)
Q Consensus 476 rlral~ll~~Fld~~~-wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~-~l~k~~~~~yf~~~L~ 553 (1348)
--|-+.++++|+.-=| .-.--=+=.|+|.|+||-+.++..-.|-=+.-|+++++.. .+|. |-+-+++..-...-|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHh
Confidence 3467778888873222 0000002358899999999988666666688899999872 2331 1122223333333344
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh-------hccch
Q 000697 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL-------WEDFT 626 (1348)
Q Consensus 554 ~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l-------~~~~~ 626 (1348)
+.+ |--|--+.++|+.+= +.+..- +..+.+.+..++++ ||+||||.++++++.-= .+...
T Consensus 137 Dre--p~VRiqAv~aLsrlQ-~d~~de----e~~v~n~l~~liqn------DpS~EVRRaaLsnI~vdnsTlp~IveRar 203 (892)
T KOG2025|consen 137 DRE--PNVRIQAVLALSRLQ-GDPKDE----ECPVVNLLKDLIQN------DPSDEVRRAALSNISVDNSTLPCIVERAR 203 (892)
T ss_pred ccC--chHHHHHHHHHHHHh-cCCCCC----cccHHHHHHHHHhc------CCcHHHHHHHHHhhccCcccchhHHHHhh
Confidence 444 468888999999984 322211 34567888888987 99999999999987632 22211
Q ss_pred HHH----HhhhccCch-------------hhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 627 EAQ----TIGRRADAP-------------AIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 627 ~~~----~~~~~~~~~-------------~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
+++ ...+...+. ..+-.-|+|..--||.|++=+|..=|
T Consensus 204 DV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W 258 (892)
T KOG2025|consen 204 DVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW 258 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 111 111111110 01223568999999999988777644
No 465
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=89.65 E-value=2.1 Score=48.40 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhccC---CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecch
Q 000697 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA---KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226 (1348)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~---~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~ 226 (1348)
.++|.+-++.+-- ......|.+.+++++.+..+.+.. ..+=++|-|-|||. .|.|+--|.. ++++
T Consensus 32 ~~~l~~~f~~lgF--~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-----~~~l~~~D~~-----~v~l 99 (241)
T smart00115 32 AENLTELFQSLGY--EVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-----EGGIYGTDHS-----PLPL 99 (241)
T ss_pred HHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-----CCeEEEecCC-----EEEH
Confidence 4555555555333 456789999999999998886642 34557888999995 4678776643 6788
Q ss_pred Hhhhhhc---------CCCeEEEEeCCchhhHHHHHHhhccCCCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhc
Q 000697 227 SDLDSWL---------KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSC 297 (1348)
Q Consensus 227 ~~l~~~~---------~~p~~~v~dc~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftsc 297 (1348)
.+|.+.+ |.|-+||+|..-....-..+....+. ... .+......+. ...-++|+|-+.
T Consensus 100 ~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~---~~~---------~~~~~~~~~~-~~p~~~D~li~y 166 (241)
T smart00115 100 DEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDV---DDP---------PTEFEDDAIY-KIPVEADFLAAY 166 (241)
T ss_pred HHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeeccccc---ccc---------cccccccccc-cCCCcCcEEEEE
Confidence 8888877 67999999987543211111000000 000 0001111111 122478999999
Q ss_pred ccchHHHHHH
Q 000697 298 LTTPITMALR 307 (1348)
Q Consensus 298 l~tP~~~al~ 307 (1348)
-|.|-..|.+
T Consensus 167 sT~pG~va~r 176 (241)
T smart00115 167 STTPGYVSWR 176 (241)
T ss_pred eCCCCeEeec
Confidence 9999988754
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.62 E-value=0.16 Score=64.11 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=113.2
Q ss_pred CCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc
Q 000697 1056 NERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1348)
Q Consensus 1056 dg~I~VWd~~t~~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1134 (1348)
.+-+++-|.++...- ..+++.. +.+-.+.|- +.+...+. -.-|...|||+..-+|+....-..+........+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~---G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFP---GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCC---CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 344555555432210 1123333 567778883 33433333 4457899999866444432111111112122222
Q ss_pred cccceEEEEec---CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC---------CeEEEEEecCCCCEEEEEeCCC
Q 000697 1135 RCSNVVVDWQQ---QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC---------SISALTASQVHGGQLAAGFVDG 1202 (1348)
Q Consensus 1135 ~si~~~v~ws~---~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~---------~VtsL~~~s~dg~~LvsGs~DG 1202 (1348)
.- +.|.| +.-++..+-+++.|++....+.. ...+..|... .+.-+...++||..|++.+.||
T Consensus 184 ~~----V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 184 QL----VSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred ce----eeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 11 34433 34455555677888887776654 2333444333 1223344689999999999999
Q ss_pred eEEEEECCC-CC---eeeEeecCCCCCCCCeEEEEEecC-----CCC--CEEEEEE-CCCcEEEEEcCCCCcceEEEecC
Q 000697 1203 SVRLYDVRT-PD---MLVCSTRPHTQQVERVVGISFQPG-----LDP--AKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH 1270 (1348)
Q Consensus 1203 ~VrvwDlr~-~~---~~v~~~~~~~~h~~~I~sl~~sp~-----~~g--~~LaSgs-~DG~I~IWDlr~~~~~v~t~~~h 1270 (1348)
.++.|-+.- ++ .+...++.+.+| +-.|..++.. .-+ .++++++ .+..+++|..... +|+ +...
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~--p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w-~Cl--l~~~ 332 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKH--PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW-QCL--LDKL 332 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCC--CceeeeeccccccCCccceeEEEEecccCCcceeEeeccch-hhh--hhhc
Confidence 999887652 22 134444444433 2222224322 001 2334444 3456999987766 444 1111
Q ss_pred CCCeEEEEEeCCCC------------EEEEEeCCCcEEEEE
Q 000697 1271 RGSLSALAVHRHAP------------IIASGSAKQLIKVFS 1299 (1348)
Q Consensus 1271 ~~~VtsLa~spdg~------------~LasgS~Dg~I~Vwd 1299 (1348)
...|..+. -++|. .+++-+-++.|++|.
T Consensus 333 ~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 333 IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 22333333 22222 123456678888886
No 467
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.00 E-value=1.7 Score=41.94 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc
Q 000697 567 FVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 646 (1348)
Q Consensus 567 fiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~ 646 (1348)
.+|+.++-..+.. ..-.-..++.-.+..+. |+++.||..+|=+|.++.....+.- ...-..+.+.|.+++.
T Consensus 8 i~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~-------D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 8 IGLAAVAIALGKD-ISKYLDEILPPVLKCFD-------DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHchHh-HHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 4445444333332 33345566667777777 8999999999999999986543221 1123455567899999
Q ss_pred CCCHHHHHHHHH
Q 000697 647 EPQPEVRASAVF 658 (1348)
Q Consensus 647 D~sP~VRaa~v~ 658 (1348)
|+.|.||.++-+
T Consensus 79 D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 79 DPDENVRSAAEL 90 (97)
T ss_pred CCchhHHHHHHH
Confidence 999999999854
No 468
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.89 E-value=13 Score=42.31 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=44.9
Q ss_pred EEcCCCCEEEEEE-----CCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000697 1042 LLQPFSPIVVAAD-----ENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1348)
Q Consensus 1042 ~fspdg~~Latgs-----~dg~I~VWd~~t~-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1109 (1348)
.|||||.+|...- ..|.|-|||...+ +.+..|..|. -.-..+.| ..||..++.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G---iGpHev~l--m~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG---IGPHEVTL--MADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC---cCcceeEE--ecCCcEEEEeC--Cceecc
Confidence 3999999988764 3578999999854 5667788777 55667778 57999888764 335544
No 469
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.80 E-value=31 Score=44.32 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCCcEEEE--ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-CeE
Q 000697 1036 KGTKTALLQPFSPIVVAAD------ENERIKIW--NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1106 (1348)
Q Consensus 1036 ~~I~sl~fspdg~~Latgs------~dg~I~VW--d~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1106 (1348)
..+...+++|+|+.++... .|+.-.|| +.. +.. ..+... ...+.-.| +++|..|++..+. ..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g----~~~t~PsW--spDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG----HSLTRPSW--SLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC----CCCCCceE--CCCCCceEEEecCcceE
Confidence 3578899999999777654 24444444 542 222 333222 23667778 7898888877643 223
Q ss_pred EEEeccCCCCceeEEeeee--ccc-CCCCcccccceEEEEecCCCeEEEEECCCeEEE---EECCCCceee---eeecCC
Q 000697 1107 RIWKDYDQKDKQKLVTAFS--SIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML---WDLEKEQQMV---NPIPSS 1177 (1348)
Q Consensus 1107 rIWdl~~~~~~~~lvs~~~--~l~-~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrV---WDl~t~~~~v---~~l~~~ 1177 (1348)
++.+-.. .++.... ... ... .....|.. +.|++||..++... +|.|.+ -....+...+ ..+...
T Consensus 422 ~v~~~~~-~gql~~~-~vd~ge~~~~~~g~Iss----l~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 422 RVIRDPA-TGQLART-PVDASAVASRVPGPISE----LQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEeccCC-CceEEEE-eccCchhhhccCCCcCe----EEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 3333211 1111100 000 000 12334555 99999999988776 466766 3322332011 112222
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1178 ~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
....+.++. |..++.+ +.+..++...+|.+.-.-.....+ ........+..|+-.+. .++....+|.+.
T Consensus 495 l~~~~~~l~-W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLD-WRTGDSL-VVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS----TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccce-EecCCEE-EEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc----eEEEEcCCceEE
Confidence 222257774 5556664 455555555555544222111111 11112356777766543 455566666443
No 470
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.76 E-value=49 Score=37.79 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=104.8
Q ss_pred EEEecCCCeEEEEECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCCCeeeEe
Q 000697 1141 VDWQQQSGYLYASGEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1141 v~ws~~~~~Ll~gg~Dg--~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~~~~v~~ 1218 (1348)
+.|..++..+-++|.-| .|+.+|+.+++ ......-....---.++.. ++.+..-.=.+|...+||..+-+ .+..
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-KIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE-EEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce-EEEE
Confidence 55644554455556544 69999999998 6655443322212333222 44556666788999999999876 4444
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecCC-----CCeEEEEEeCCCCEEEEEeCCC
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGSAKQ 1293 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~-----~~VtsLa~spdg~~LasgS~Dg 1293 (1348)
+ ... +.=..++ .+ +..|+.......+.++|..+. +..+++.... ..++.+.+. +|.+.|=.=...
T Consensus 126 ~-~y~---~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 F-PYP---GEGWGLT--SD--GKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp E-E-S---SS--EEE--EC--SSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred E-ecC---CcceEEE--cC--CCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 4 222 2333444 33 666776666778999998876 5565555332 246667776 566666655556
Q ss_pred cEEEEE-cCCceEEEEeccCCccc---------ccccCCeEEEEEeCCCCEEEEEE
Q 000697 1294 LIKVFS-LEGEQLGTIRYHHPSFM---------AQKIGSVNCLTFHPYQVLLAAGS 1339 (1348)
Q Consensus 1294 ~I~Vwd-~~g~~l~~i~~~h~~f~---------~~~~~~Vtslafspdg~~Latgs 1339 (1348)
.|...| .+|+....+.. .. .. .......+++|++|....|...|
T Consensus 196 ~I~~Idp~tG~V~~~iDl-s~-L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDL-SG-LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE--HH-HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEh-hH-hhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677778 56777776643 11 10 01246789999998876554444
No 471
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.42 E-value=36 Score=44.60 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=86.7
Q ss_pred HhcCchhhhHHhccCC---chhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCC----CCchHHHH---HHHH
Q 000697 498 LSVGIFPYVLKLLQTT---TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSM----EAYPEQRA---MAAF 567 (1348)
Q Consensus 498 l~~gifpyvlklL~s~---a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~----~~~~~~r~---~~af 567 (1348)
++--+.+-++.||+|| ..++-.++-|--|-.....+ +-.|.-.++.|+.+ .....+|| -.|-
T Consensus 731 ~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~--------~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~ 802 (1233)
T KOG1824|consen 731 ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP--------DLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAK 802 (1233)
T ss_pred HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC--------CccHHHHHHHHcCCcccccccchhHHHHHHHHH
Confidence 3445677888888887 34454444443332222111 11244555555532 11136666 3677
Q ss_pred HHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccC
Q 000697 568 VLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE 647 (1348)
Q Consensus 568 iLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D 647 (1348)
|.|.++.-++ |.. .-+...+..-+... ..+--.|-.+.|.||.+-...+..- ..++...++..++.
T Consensus 803 cvA~Lt~~~~--~~s---~s~a~kl~~~~~s~-----~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 803 CVAALTCACP--QKS---KSLATKLIQDLQSP-----KSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNS 868 (1233)
T ss_pred HHHHHHHhcc--ccc---hhHHHHHHHHHhCC-----CCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCC
Confidence 8888876666 222 12233344333311 3345688899999999876654422 23344578899999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 000697 648 PQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 648 ~sP~VRaa~v~aL~~~i 664 (1348)
++-+|++|+.||||.+-
T Consensus 869 p~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLA 885 (1233)
T ss_pred ChHHHHHHHHHHhhhhh
Confidence 99999999999999986
No 472
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.33 E-value=12 Score=47.98 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=81.1
Q ss_pred eEEEEEecCCCCEEEEEe------CCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC----
Q 000697 1182 ISALTASQVHGGQLAAGF------VDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---- 1249 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs------~DG--~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D---- 1249 (1348)
+.+. ..+++|+.++... .|+ .|.+++..... .... . + ...+.-.|+|+ |..+++.+..
T Consensus 352 vssp-aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt--~-g--~~~t~PsWspD--G~~lw~v~dg~~~~ 421 (591)
T PRK13616 352 ITSA-ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL--E-G--HSLTRPSWSLD--ADAVWVVVDGNTVV 421 (591)
T ss_pred cccc-eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee--c-C--CCCCCceECCC--CCceEEEecCcceE
Confidence 6666 5678898877665 243 55666653222 2211 1 1 24788899998 7777666432
Q ss_pred --------CcEEEEEcCCCCcceEEEecCCCCeEEEEEeCCCCEEEEEeCCCcEEE---EEc-CCceEEEEeccCCcccc
Q 000697 1250 --------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV---FSL-EGEQLGTIRYHHPSFMA 1317 (1348)
Q Consensus 1250 --------G~I~IWDlr~~~~~v~t~~~h~~~VtsLa~spdg~~LasgS~Dg~I~V---wd~-~g~~l~~i~~~h~~f~~ 1317 (1348)
+.+.+.++..+ +... ...+.|..+.|+|||..+|... +++|.| -.. .|. ..+.. ......
T Consensus 422 ~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~-~~~l~~ 493 (591)
T PRK13616 422 RVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTN-PREVGP 493 (591)
T ss_pred EEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecc-cEEeec
Confidence 23333344332 2221 2356799999999999887765 477776 332 343 22211 000000
Q ss_pred cccCCeEEEEEeCCCCEEEEEECCCeEEEc
Q 000697 1318 QKIGSVNCLTFHPYQVLLAAGSADACVSIH 1347 (1348)
Q Consensus 1318 ~~~~~Vtslafspdg~~Latgs~Dg~I~IW 1347 (1348)
.-...+.++.|..++.++ ++..++...+|
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceE
Confidence 112346889999999855 54444433333
No 473
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.28 E-value=0.46 Score=56.08 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=120.1
Q ss_pred hhhHHHhcC-CCC-C--CCCCCchhhHHHHhhchhhHH--HHHH-HHHHHhcCCH------HHHHHHHhcCchhhhHHhc
Q 000697 444 TAFEVWLDH-GSE-H--KKPPEQLPIVLQVLLSQCHRF--RALV-LLGRFLDMGP------WAVDLALSVGIFPYVLKLL 510 (1348)
Q Consensus 444 tafe~~L~~-g~~-~--~~~p~~lP~vLq~LlS~~~rl--ral~-ll~~Fld~~~------wAv~lal~~gifpyvlklL 510 (1348)
+.|-+||-. .+- + .+--..+|.+.+++...+.+. |-++ ++.++||.|| -+....+-.++ |--+++|
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L 298 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSL 298 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHH
Confidence 457777643 221 1 111256777778777665543 4333 5567888885 22222333333 3344444
Q ss_pred cCC---chhhhhHHHHHHHHHhccChhhhhhhhhccC-hhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHH--
Q 000697 511 QTT---TPELRQILVFIWTKILALDKSCQVDLVKDGG-HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI-- 584 (1348)
Q Consensus 511 ~s~---a~elr~~~~FIwa~il~~~~~~q~~l~k~~~-~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~-- 584 (1348)
+.. ..|+..-+-||-.+.-. +.|..+--|.- -..+...|..+ |-||- ..||+.+- .++
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~---svq~LsSFDeY~sEl~sG~L~WS---P~Hk~------e~FW~eNa----~rlne 362 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKN---SVQDLSSFDEYKSELRSGRLEWS---PVHKS------EKFWRENA----DRLNE 362 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHH---HHHhhccHHHHHHHHHhCCcCCC---ccccc------cchHHHhH----HHHhh
Confidence 422 45677666777654432 22211111100 01122233322 22321 12343321 123
Q ss_pred -hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhh
Q 000697 585 -EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1348)
Q Consensus 585 -~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1348)
+-+++.++.++|+. ..+|.+-+-+|.=+|++..-+|+++.+..+-++-+.+..|++++.|+||-.|+.|+.++
T Consensus 363 nnyellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 363 NNYELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred ccHHHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 33567788888985 55699999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 000697 664 LD 665 (1348)
Q Consensus 664 i~ 665 (1348)
+.
T Consensus 437 m~ 438 (442)
T KOG2759|consen 437 MV 438 (442)
T ss_pred Hh
Confidence 73
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.25 E-value=16 Score=47.18 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeE-----eecC--------CCC-----CCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000697 1192 GGQLAAGFVDGSVRLYDVRTPDMLVC-----STRP--------HTQ-----QVERVVGISFQPGLDPAKIVSASQAGDIQ 1253 (1348)
Q Consensus 1192 g~~LvsGs~DG~VrvwDlr~~~~~v~-----~~~~--------~~~-----h~~~I~sl~~sp~~~g~~LaSgs~DG~I~ 1253 (1348)
.++++++. .+.|.||+.+....... .+.. ... -...|+.+.+..-++..+|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666654 67899998874332110 0000 000 11235555554434567889999999999
Q ss_pred EEEcCCCC-------------------cceEEEecCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCC--ceEEEEec
Q 000697 1254 FLDIRNHK-------------------DAYLTIDAHRGSLSALAVH--RHAPIIASGSAKQLIKVFSLEG--EQLGTIRY 1310 (1348)
Q Consensus 1254 IWDlr~~~-------------------~~v~t~~~h~~~VtsLa~s--pdg~~LasgS~Dg~I~Vwd~~g--~~l~~i~~ 1310 (1348)
+|.+..-- ++...+. -....+++++| ...++||+++....|.||-... +.....+.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 99763100 1122222 23478999999 8888999999999999987432 11111111
Q ss_pred cCCcccccccCCeEEEEEeCCC------CEEEEEECCCeEEEcC
Q 000697 1311 HHPSFMAQKIGSVNCLTFHPYQ------VLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1311 ~h~~f~~~~~~~Vtslafspdg------~~Latgs~Dg~I~IWd 1348 (1348)
+ .+...|.+++|-++. ..|++++-.|.+-+|+
T Consensus 207 -~-----~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 207 -H-----QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred -c-----ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 1 244678899997654 2677777799887763
No 475
>PHA03098 kelch-like protein; Provisional
Probab=88.16 E-value=17 Score=46.00 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCCeEEEEECC-----CeEEEEECCCCceeee--eecCCCCCCeEEEEEecCCCCEEEEEeCC------CeEEEEECCCC
Q 000697 1146 QSGYLYASGEV-----SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGGQLAAGFVD------GSVRLYDVRTP 1212 (1348)
Q Consensus 1146 ~~~~Ll~gg~D-----g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~~~s~dg~~LvsGs~D------G~VrvwDlr~~ 1212 (1348)
++..++.||.+ ..+..||..+.+ -.. .++..... .++ ...++.+++.|+.+ ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~--~~~--~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYN--PCV--VNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCcc--ceE--EEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 45555666644 357788887765 221 22211111 112 12356777777732 46889998865
Q ss_pred CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC--------cEEEEEcCCCCcceEEEec---CCCCeEEEEEeC
Q 000697 1213 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA---HRGSLSALAVHR 1281 (1348)
Q Consensus 1213 ~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG--------~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~sp 1281 (1348)
+ -. ............ ++.. -+ +..++.|+.++ .+.+||..+.. ...+.. .......+.+
T Consensus 417 ~-W~-~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-- 486 (534)
T PHA03098 417 K-WS-KGSPLPISHYGG-CAIY-HD--GKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF-- 486 (534)
T ss_pred e-ee-ecCCCCccccCc-eEEE-EC--CEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--
Confidence 4 11 111111101111 2222 23 66777776432 38888987642 222211 1111122222
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCceEEEEe
Q 000697 1282 HAPIIASGSAK-----QLIKVFSLEGEQLGTIR 1309 (1348)
Q Consensus 1282 dg~~LasgS~D-----g~I~Vwd~~g~~l~~i~ 1309 (1348)
++++++.|+.+ +.|.+||...+.-..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 66777777654 46788886655444443
No 476
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.02 E-value=3.9 Score=52.74 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh
Q 000697 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA 639 (1348)
Q Consensus 560 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~ 639 (1348)
-.|...|=||+.++-..|+ .++.++-..+. .+.|-.|.-++-+.--.+.+.+.--..-+... ..
T Consensus 947 gtR~vvAECLGkL~l~epe--------sLlpkL~~~~~-------S~a~~~rs~vvsavKfsisd~p~~id~~lk~~-ig 1010 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVLIEPE--------SLLPKLKLLLR-------SEASNTRSSVVSAVKFSISDQPQPIDPLLKQQ-IG 1010 (1233)
T ss_pred hhHHHHHHHhhhHHhCChH--------HHHHHHHHHhc-------CCCcchhhhhhheeeeeecCCCCccCHHHHHH-HH
Confidence 4588888899888754443 34555555565 66777887777777666655443222222222 34
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhhcccC
Q 000697 640 IYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1348)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1348)
.++.++.||.++||.+++.+|.+++...
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 7899999999999999999999999553
No 477
>PHA02790 Kelch-like protein; Provisional
Probab=87.92 E-value=16 Score=45.77 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=86.2
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEeccCCCCce
Q 000697 1046 FSPIVVAADENE-----RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYDQKDKQ 1118 (1348)
Q Consensus 1046 dg~~Latgs~dg-----~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~~~~~~ 1118 (1348)
++.++++|+.++ .+..||..+++....-.... +......+. -++.+.+.||.++ .+..||..+ +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~----~~~~iYviGG~~~~~sve~ydp~~--n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYASGVP----ANNKLYVVGGLPNPTSVERWFHGD--AAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcceEEE----ECCEEEEECCcCCCCceEEEECCC--CeE
Confidence 345666776543 46667777654332211111 111222222 2677777777543 577777643 222
Q ss_pred eEEeeeecccCCCCcccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeee--eecCCCCCCeEEEEEecCCCC
Q 000697 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGG 1193 (1348)
Q Consensus 1119 ~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~D---g~IrVWDl~t~~~~v~--~l~~~~~~~VtsL~~~s~dg~ 1193 (1348)
..+........... ++. -++...+.||.+ ..+..||.++.+ -.. .+...... .+++. .++.
T Consensus 344 ------~~~~~l~~~r~~~~--~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~--~~~~~--~~~~ 409 (480)
T PHA02790 344 ------VNMPSLLKPRCNPA--VAS-INNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYK--SCALV--FGRR 409 (480)
T ss_pred ------EECCCCCCCCcccE--EEE-ECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCcccc--ceEEE--ECCE
Confidence 22232222222211 111 134455555544 347789987765 222 11111111 12212 2566
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 000697 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDIQFLDIRNH 1260 (1348)
Q Consensus 1194 ~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D-----G~I~IWDlr~~ 1260 (1348)
+.+.| |.+.+||.++++ -. ............ +++.. + +++.+.|+.+ ..|..||..+.
T Consensus 410 IYv~G---G~~e~ydp~~~~-W~-~~~~m~~~r~~~-~~~v~-~--~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 410 LFLVG---RNAEFYCESSNT-WT-LIDDPIYPRDNP-ELIIV-D--NKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEEC---CceEEecCCCCc-Ee-EcCCCCCCcccc-EEEEE-C--CEEEEECCcCCCcccceEEEEECCCC
Confidence 66766 457889987665 11 111221111222 22222 2 6788888754 34667776644
No 478
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.83 E-value=2.7 Score=52.55 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred hhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH
Q 000697 548 FIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 627 (1348)
Q Consensus 548 f~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~ 627 (1348)
|..+|......+..|.++|=.++.+++.||. +...+++..+.+.+ |.+..+|.+++=.|-.|+.+.++
T Consensus 25 y~~il~~~kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcE-------Ded~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 25 YKEILDGVKGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCE-------DEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--------SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHh-------cccHHHHHHHHHhHHHHHHhHHH
Confidence 3344443334478999999999999999999 55667888889998 88999999999999999988544
Q ss_pred HHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 628 AQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 628 ~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
- -..++..|..||.-..|..+.++=-+|-+++
T Consensus 93 ~-----v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 H-----VSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp ------HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred H-----HhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 1234567888998888888888877777776
No 479
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.73 E-value=76 Score=38.72 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=112.1
Q ss_pred eeCCCCEEEEE-eCCC----eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEEC---------
Q 000697 1090 NELDVSLLLVA-SCNG----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------- 1155 (1348)
Q Consensus 1090 ns~d~~~L~tg-s~DG----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~--------- 1155 (1348)
.++++++++.+ +..| .|+++|+.+ ++. +... +. .+.. ..+.|.+++..++....
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~~-l~d~---i~----~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLET--GKF-LPDG---IE----NPKF--SSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTT--TEE-EEEE---EE----EEES--EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCC--CcC-cCCc---cc----cccc--ceEEEeCCCCEEEEEEeCcccccccC
Confidence 38999988865 3333 599999976 321 1111 11 1111 12899999887776642
Q ss_pred --CCeEEEEECCCCcee-eeeecCCCCCC-eEEEEEecCCCCEEEEEeCC----CeEEEEECCCC----CeeeEeecCCC
Q 000697 1156 --VSSIMLWDLEKEQQM-VNPIPSSSDCS-ISALTASQVHGGQLAAGFVD----GSVRLYDVRTP----DMLVCSTRPHT 1223 (1348)
Q Consensus 1156 --Dg~IrVWDl~t~~~~-v~~l~~~~~~~-VtsL~~~s~dg~~LvsGs~D----G~VrvwDlr~~----~~~v~~~~~~~ 1223 (1348)
...|+.|.+.+.... ...+....... ...+ ..+.++++++..... ..|.+.|.... ...........
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-SRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-EE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-EecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776411 23344433332 4555 567888887754433 35788888874 11222221121
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCc--ceEEEecCCCCeEEEEEeCCCC-EEEEEeCCC--cE
Q 000697 1224 QQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKD--AYLTIDAHRGSLSALAVHRHAP-IIASGSAKQ--LI 1295 (1348)
Q Consensus 1224 ~h~~~I~sl~~sp~~~g~~LaSgs~---DG~I~IWDlr~~~~--~v~t~~~h~~~VtsLa~spdg~-~LasgS~Dg--~I 1295 (1348)
+....+... + +.+++.... ++.|.-.++..... ....+..+...+.-..+...+. +++....++ .|
T Consensus 278 ---~~~~~v~~~-~--~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 278 ---GVEYYVDHH-G--DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp ---S-EEEEEEE-T--TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred ---ceEEEEEcc-C--CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEE
Confidence 222333333 3 444444432 35677778776631 2335555665433333333444 444444444 58
Q ss_pred EEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCC
Q 000697 1296 KVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1333 (1348)
Q Consensus 1296 ~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~ 1333 (1348)
++++.. +.....+.. .. .+.|..+...+++.
T Consensus 352 ~v~~~~~~~~~~~~~~-p~------~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL-PE------AGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEETT-TEEEEEEES-SS------SSEEEEEES-TT-S
T ss_pred EEEECCCCcEEeeecC-Cc------ceEEeccCCCCCCC
Confidence 889988 777777765 32 24455555555543
No 480
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.66 E-value=68 Score=38.11 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=45.1
Q ss_pred ceEEEecCCCCeEEEEEeCC-------CCEEEEEeCCCcEEEEEcC-CceEEEEeccCCcccccccCCeEEEEEeCCCCE
Q 000697 1263 AYLTIDAHRGSLSALAVHRH-------APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1334 (1348)
Q Consensus 1263 ~v~t~~~h~~~VtsLa~spd-------g~~LasgS~Dg~I~Vwd~~-g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~ 1334 (1348)
++..+..| ..++.+.|... |.++++.-..+.|....++ +..+.. +..+.......+..+++.|||.+
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE----EEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE----EEEECTTSSS-EEEEEEETTSEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc----eEEccccCCCCceEEEEcCCCeE
Confidence 45555555 45677777643 4466655555677766644 322221 12222333458999999999999
Q ss_pred EEEEECCCeEE
Q 000697 1335 LAAGSADACVS 1345 (1348)
Q Consensus 1335 Latgs~Dg~I~ 1345 (1348)
+++.+.+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 98888888874
No 481
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.33 E-value=42 Score=38.22 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred CeEEEEEecCCCCEEEEEe---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE-
Q 000697 1181 SISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD- 1256 (1348)
Q Consensus 1181 ~VtsL~~~s~dg~~LvsGs---~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWD- 1256 (1348)
.+.+. ..+++++.+++.. ....++++...... .... . ...++.-.|+++ +...+....+...+++.
T Consensus 25 ~~~s~-AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---~--g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSP-AVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---T--GGSLTRPSWDPD--GWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccce-EECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---c--CCccccccccCC--CCEEEEEcCCCceEEEEe
Confidence 36666 6778888777655 23345555443322 2211 1 247888899998 77777777677777774
Q ss_pred cCCCCcceEEEecC--CCCeEEEEEeCCCCEEEEEe---CCCcEEEEEc----CCceEEEEeccCCcccccccCCeEEEE
Q 000697 1257 IRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGS---AKQLIKVFSL----EGEQLGTIRYHHPSFMAQKIGSVNCLT 1327 (1348)
Q Consensus 1257 lr~~~~~v~t~~~h--~~~VtsLa~spdg~~LasgS---~Dg~I~Vwd~----~g~~l~~i~~~h~~f~~~~~~~Vtsla 1327 (1348)
...+.......... .+.|+.+.++|||..+|.-. .++.|.|--+ +|.. ..+.. ...........+++++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~-~~l~~-~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP-RRLTG-PRRVAPPLLSDVTDVA 172 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc-ceecc-ceEecccccCcceeee
Confidence 23221122222222 12799999999999776654 3567776642 2311 11111 0001112236889999
Q ss_pred EeCCCCEEEEEEC
Q 000697 1328 FHPYQVLLAAGSA 1340 (1348)
Q Consensus 1328 fspdg~~Latgs~ 1340 (1348)
|.+++.+++.+..
T Consensus 173 W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 173 WSDDSTLVVLGRS 185 (253)
T ss_pred ecCCCEEEEEeCC
Confidence 9999988777655
No 482
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.18 E-value=0.79 Score=60.15 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhcc-CCCHHHHHHHHHHHHhhccc
Q 000697 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDI 666 (1348)
Q Consensus 588 ~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~ 666 (1348)
+.+.|-..-. -.+|++++++-+|||+|+--..+ +=+.....|...++ .++|.||+=+|++||-|.=.
T Consensus 924 v~e~c~n~~~-------~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 924 VVEGCRNPGL-------FSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHhcCCCc-------CCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Q ss_pred CcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHh
Q 000697 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1348)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 722 (1348)
..+.... ....|...+.|.+++||+.++..+++++..
T Consensus 992 fpnlie~-------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 992 FPNLIEP-------------------WTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred cccccch-------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHh
No 483
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.01 E-value=78 Score=38.13 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCeEEEEEEeeCCCCEEEEEe-----------CCC-eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCC
Q 000697 1081 KGISKLCLVNELDVSLLLVAS-----------CNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1348)
Q Consensus 1081 ~~ItsL~f~ns~d~~~L~tgs-----------~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~ 1148 (1348)
.....|+| .++|.++++-. ..+ .|.+++..+..++....+ .+......... +++.+++
T Consensus 14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~---vfa~~l~~p~G----i~~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN---VFAEELSMVTG----LAVAVGG- 83 (367)
T ss_pred CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE---EeecCCCCccc----eeEecCC-
Confidence 35667888 67777666642 223 677776554344433221 12222222344 6666655
Q ss_pred eEEEEECCCeEEEEECCCC-----c--eeeeeecCC---CCCCeEEEEEecCCCCEEEEEeCC-----------------
Q 000697 1149 YLYASGEVSSIMLWDLEKE-----Q--QMVNPIPSS---SDCSISALTASQVHGGQLAAGFVD----------------- 1201 (1348)
Q Consensus 1149 ~Ll~gg~Dg~IrVWDl~t~-----~--~~v~~l~~~---~~~~VtsL~~~s~dg~~LvsGs~D----------------- 1201 (1348)
++++......++.|.... + ..+..+... .......+ .+.++|.+.++-+..
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l-~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL-AWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc-eECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 666665554455565321 1 022223322 11225566 566788776654421
Q ss_pred --CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000697 1202 --GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1248 (1348)
Q Consensus 1202 --G~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~ 1248 (1348)
|.|.-+|....+ . ..+ . .+ -.....++|++. |+.+++-..
T Consensus 162 ~~g~i~r~~pdg~~-~-e~~-a-~G-~rnp~Gl~~d~~--G~l~~tdn~ 203 (367)
T TIGR02604 162 LGGGLFRYNPDGGK-L-RVV-A-HG-FQNPYGHSVDSW--GDVFFCDND 203 (367)
T ss_pred cCceEEEEecCCCe-E-EEE-e-cC-cCCCccceECCC--CCEEEEccC
Confidence 445555555443 1 122 1 11 134568899998 888776443
No 484
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.96 E-value=0.95 Score=35.97 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=33.8
Q ss_pred hHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhc
Q 000697 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1348)
++.+...++.++...|+.+|++++++||.+++.||+.+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 455566688899999999999999999999999999874
No 485
>PHA02790 Kelch-like protein; Provisional
Probab=86.88 E-value=27 Score=43.71 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=67.3
Q ss_pred CCCeEEEEECC--CeEEEEECCCCcee--eeeecCCCCCCeEEEEEecCCCCEEEEEeCCC---eEEEEECCCCCeeeEe
Q 000697 1146 QSGYLYASGEV--SSIMLWDLEKEQQM--VNPIPSSSDCSISALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCS 1218 (1348)
Q Consensus 1146 ~~~~Ll~gg~D--g~IrVWDl~t~~~~--v~~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG---~VrvwDlr~~~~~v~~ 1218 (1348)
++...++||.+ ..+..||..+++ - +..+...... . ++ ..-+|.+.+.|+.++ .+..||.++.+ -..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~r~~-~-~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~- 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKPRCN-P-AV--ASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQF- 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe-EEECCCCCCCCcc-c-EE--EEECCEEEEecCcCCCCccEEEEeCCCCE-EEe-
Confidence 44455555543 458889877654 2 2222221111 1 22 123678888888654 47788887654 111
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEec---CCCCeEEEEEeCCCCEEEEEeCC---
Q 000697 1219 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAK--- 1292 (1348)
Q Consensus 1219 ~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~---h~~~VtsLa~spdg~~LasgS~D--- 1292 (1348)
.............+.+ + +.+.+.| |.+.+||.++. ....+.. ..... +++.. ++++.+.|+.+
T Consensus 391 ~~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~-~~~v~-~~~IYviGG~~~~~ 459 (480)
T PHA02790 391 GPSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNP-ELIIV-DNKLLLIGGFYRGS 459 (480)
T ss_pred CCCCCCccccceEEEE--C--CEEEEEC---CceEEecCCCC--cEeEcCCCCCCcccc-EEEEE-CCEEEEECCcCCCc
Confidence 1111111111112222 2 6666666 45788998754 2222221 12222 22332 56777887754
Q ss_pred --CcEEEEEcCC
Q 000697 1293 --QLIKVFSLEG 1302 (1348)
Q Consensus 1293 --g~I~Vwd~~g 1302 (1348)
..|..||...
T Consensus 460 ~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 YIDTIEVYNNRT 471 (480)
T ss_pred ccceEEEEECCC
Confidence 2455666443
No 486
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=86.85 E-value=4 Score=46.26 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccccccccccCCCHHHHHHHHHHhhc-cC-CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeecchH
Q 000697 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRR-YA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPIS 227 (1348)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~-~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~ 227 (1348)
.+.|..-++.+.- ......|++.+++++.+..+.+ +. ..+=++|-|-|||.- |.|+--|. .++++.
T Consensus 34 ~~~l~~~f~~lgF--~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~-----~~l~~~D~-----~~v~l~ 101 (243)
T cd00032 34 AENLTKLFESLGY--EVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE-----GGIYGTDG-----DVVPID 101 (243)
T ss_pred HHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC-----CEEEEecC-----cEEEHH
Confidence 4555555555433 4567899999999999888774 33 445578889999963 77887774 467888
Q ss_pred hhhhhc---------CCCeEEEEeCCchhh
Q 000697 228 DLDSWL---------KTPSIYVFDCSAAGM 248 (1348)
Q Consensus 228 ~l~~~~---------~~p~~~v~dc~~ag~ 248 (1348)
||.+.+ |.|-|||+|..-...
T Consensus 102 ~i~~~f~~~~~~sl~~kPKl~~iqACRg~~ 131 (243)
T cd00032 102 EITSLFNGDNCPSLAGKPKLFFIQACRGDE 131 (243)
T ss_pred HHHHhhccCCCccccCCCcEEEEECCCCCc
Confidence 887666 468899999876543
No 487
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=86.67 E-value=9.5 Score=49.75 Aligned_cols=347 Identities=16% Similarity=0.156 Sum_probs=181.0
Q ss_pred chhhHHHHHHHHHHHHhhccCCHHHHHHhhhhh--hHHHHHHHHHH-HHHHhhhcCCcccccCCCCCCCCCCchhhhHHH
Q 000697 337 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQD--LLVASLFRNFL-LAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413 (1348)
Q Consensus 337 ~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d--~~va~lfrnfl-la~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~ 413 (1348)
.+|++...+.. ++.++.+. ++|+.|-+-| .+....+-.+. +++-++..-.+.=...|.+=..-.-+.|..--+
T Consensus 260 ~l~~~a~~~~~---~~~~s~v~-~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~ 335 (759)
T KOG0211|consen 260 NLGNIAKVLES---EIVKSEVL-PTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYM 335 (759)
T ss_pred hhHHHHHHHHH---HHHHhhcc-HHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHH
Confidence 45555554443 66666554 5667665543 33322222222 222222221111122333333456677887777
Q ss_pred HHHHHHhcCccccCCCCCCcCCCcchHHhHhh---------------hHHHhcCCCCCCCC-CCchhhHHHHhhchhhHH
Q 000697 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTA---------------FEVWLDHGSEHKKP-PEQLPIVLQVLLSQCHRF 477 (1348)
Q Consensus 414 ~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Lta---------------fe~~L~~g~~~~~~-p~~lP~vLq~LlS~~~rl 477 (1348)
+.|.+. -|-..+....+..+....|.+++.- |+-++...+-..-+ -.+||++-.+..+.+.+.
T Consensus 336 ~~~~~~-~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 336 VADKFS-ELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred Hhhhhh-hHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH
Confidence 777665 2333222222223344455554421 44444422211101 146898877777777877
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhccChhhhhhhccCCC
Q 000697 478 RALVLLGRFL-DMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSME 556 (1348)
Q Consensus 478 ral~ll~~Fl-d~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~ 556 (1348)
|+... -++ -+.|-.-.--.-.-..|-++.+|++-.++.|-=+.=+++.+..+....-.+.++.....- +....
T Consensus 415 r~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~----i~el~ 488 (759)
T KOG0211|consen 415 RSALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA----IVELA 488 (759)
T ss_pred HHHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh----hhhhc
Confidence 77654 111 111100000000112567777777655555533322225555444333333333222111 11111
Q ss_pred CchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccC
Q 000697 557 AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 636 (1348)
Q Consensus 557 ~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~ 636 (1348)
.....|.-.+|+-.+=+.-...|+. -+...+-..|..-|. |-+-++|..++..|..+...+. .+|. ...
T Consensus 489 ~d~~wRvr~ail~~ip~la~q~~~~-~~~~~~~~l~~~~l~-------d~v~~Ir~~aa~~l~~l~~~~G-~~w~--~~~ 557 (759)
T KOG0211|consen 489 EDLLWRVRLAILEYIPQLALQLGVE-FFDEKLAELLRTWLP-------DHVYSIREAAARNLPALVETFG-SEWA--RLE 557 (759)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhH-HhhHHHHHHHHhhhh-------hhHHHHHHHHHHHhHHHHHHhC-cchh--HHH
Confidence 1113444444443332211122211 134445566777777 7788999999999999998876 5553 333
Q ss_pred chhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 000697 637 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716 (1348)
Q Consensus 637 ~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l 716 (1348)
...+++.+..+++-.+|..+++++..|+...+ .+.. ...+...+..+..|+.|+||--++..|
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g---------------~ei~--~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG---------------QEIT--CEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHhc---------------cHHH--HHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 44478888888899999999999998885421 1111 233455677789999999999999999
Q ss_pred HHHHHh
Q 000697 717 ARFAFG 722 (1348)
Q Consensus 717 s~~~~~ 722 (1348)
-.++..
T Consensus 621 ~~i~~~ 626 (759)
T KOG0211|consen 621 PKILKL 626 (759)
T ss_pred HHHHhh
Confidence 888744
No 488
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.67 E-value=3.5 Score=50.56 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCC
Q 000697 569 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP 648 (1348)
Q Consensus 569 La~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~ 648 (1348)
......+.|+|-. +=.+.+..++.-+. .++--||.=+|=.|+.+.+...+.... +-....++|..-+-|.
T Consensus 75 ~~Y~~~~dpeg~~--~V~~~~~h~lRg~e-------skdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~DR 144 (885)
T COG5218 75 FEYDMPDDPEGEE--LVAGTFYHLLRGTE-------SKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFDR 144 (885)
T ss_pred HHhcCCCChhhhH--HHHHHHHHHHhccc-------CcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhcc
Confidence 3345567788722 34445555555565 677889999999999988765553322 2223445777777899
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhh-hccCCChhhHHHHHHHH
Q 000697 649 QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLT-VVSDGSPLVRAEVAVAL 716 (1348)
Q Consensus 649 sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~-~~~D~sp~VR~e~~~~l 716 (1348)
-|-||.++|++|..|-+-. . ..|..++..|+. +-+|+|.+||+.+..-+
T Consensus 145 E~~VR~eAv~~L~~~Qe~~------------~-------neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 145 EKAVRREAVKVLCYYQEME------------L-------NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hHHHHHHHHHHHHHHHhcc------------C-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 9999999999999996221 1 114444555544 35899999999887544
No 489
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.54 E-value=0.83 Score=58.02 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCeEEEEEecCC-CCCEEEEEECCCcEEEEEcCCCCcceEEEecCCCCeEEE-----------EEeCCCCEEEEEeCCCc
Q 000697 1227 ERVVGISFQPGL-DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL-----------AVHRHAPIIASGSAKQL 1294 (1348)
Q Consensus 1227 ~~I~sl~~sp~~-~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h~~~VtsL-----------a~spdg~~LasgS~Dg~ 1294 (1348)
..+.-|.|.|-- +.-++..+..+|.|++..+... ....+++|...++.+ .++|||.++|..+.||.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 344555554430 1467777788899998877643 234455565544433 37899999999999999
Q ss_pred EEEEE--cCCce----EEEEeccCCcccccccCCeEEEEEeCCC---------CEEEEEEC-CCeEEEcC
Q 000697 1295 IKVFS--LEGEQ----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ---------VLLAAGSA-DACVSIHS 1348 (1348)
Q Consensus 1295 I~Vwd--~~g~~----l~~i~~~h~~f~~~~~~~Vtslafspdg---------~~Latgs~-Dg~I~IWd 1348 (1348)
+++|. +.|+. +...+. |++ ++-.|.-|+.+. .++++++. +..+++|.
T Consensus 259 v~f~Qiyi~g~~~~rclhewkp-hd~------~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKP-HDK------HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred cceeeeeeeccccHhhhhccCC-CCC------CCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 99998 55543 344555 441 333333354432 34555554 45677773
No 490
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.46 E-value=16 Score=43.94 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred eEEEEEecCCCCEEEEEe-----------CCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000697 1182 ISALTASQVHGGQLAAGF-----------VDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1249 (1348)
Q Consensus 1182 VtsL~~~s~dg~~LvsGs-----------~DG-~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~D 1249 (1348)
...| .+.++|+++++-. ..+ .|.+++-..+.-.......+.........+++.++ + +++ ++..
T Consensus 16 P~~i-a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~--G-lyV-~~~~ 90 (367)
T TIGR02604 16 PIAV-CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG--G-VYV-ATPP 90 (367)
T ss_pred Ccee-eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC--C-EEE-eCCC
Confidence 4555 4566777766642 223 67666544322111111011111245678899887 6 444 4444
Q ss_pred CcEEEEEcCCCC------c-ceEEEec----CCCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEE
Q 000697 1250 GDIQFLDIRNHK------D-AYLTIDA----HRGSLSALAVHRHAPIIASGSAK-------------------QLIKVFS 1299 (1348)
Q Consensus 1250 G~I~IWDlr~~~------~-~v~t~~~----h~~~VtsLa~spdg~~LasgS~D-------------------g~I~Vwd 1299 (1348)
...++.|..... + .+..+.. +......+.|.|+|.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 333344553211 1 1122322 13447789999999876654421 3455555
Q ss_pred cCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEEC
Q 000697 1300 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1340 (1348)
Q Consensus 1300 ~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~ 1340 (1348)
.++..+..+.. .......++|+++|.++++-..
T Consensus 171 pdg~~~e~~a~--------G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLRVVAH--------GFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEEEEec--------CcCCCccceECCCCCEEEEccC
Confidence 55555544432 1134578999999988776443
No 491
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.24 E-value=1e+02 Score=41.02 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=65.8
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-------CeEEEEEec---------------CCCCEEEEEeCCCeE
Q 000697 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQ---------------VHGGQLAAGFVDGSV 1204 (1348)
Q Consensus 1147 ~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~-------~VtsL~~~s---------------~dg~~LvsGs~DG~V 1204 (1348)
++.+++++.++.|.-.|..+++ .+-.+...... ....+..+. ..+..++.++.||.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 5677777778888888888887 55444322110 011222221 134578889999999
Q ss_pred EEEECCCCCeeeEeecCC---------CCCCCCeEEEEEecCCCCCEEEEEEC----------CCcEEEEEcCCCCcceE
Q 000697 1205 RLYDVRTPDMLVCSTRPH---------TQQVERVVGISFQPGLDPAKIVSASQ----------AGDIQFLDIRNHKDAYL 1265 (1348)
Q Consensus 1205 rvwDlr~~~~~v~~~~~~---------~~h~~~I~sl~~sp~~~g~~LaSgs~----------DG~I~IWDlr~~~~~v~ 1265 (1348)
.-.|.++++.+ ..+... ......-..+.-.|--.+..+++|+. +|.|+-+|.+++ +.+-
T Consensus 273 iALDA~TGk~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl~W 350 (764)
T TIGR03074 273 IALDADTGKLC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-ALVW 350 (764)
T ss_pred EEEECCCCCEE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-cEee
Confidence 99999999844 222110 00000000111111101345666643 688999999998 4554
Q ss_pred EEe
Q 000697 1266 TID 1268 (1348)
Q Consensus 1266 t~~ 1268 (1348)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 443
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.09 E-value=99 Score=41.26 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=105.9
Q ss_pred ccccccCCCCCeEEEEEc---C--C--CCEEEEEECCCcEEEEECCC---------------CcEEEEeeCCCCCCCCeE
Q 000697 1027 IACWDTRFEKGTKTALLQ---P--F--SPIVVAADENERIKIWNYEE---------------DTLLNSFDNHDFPDKGIS 1084 (1348)
Q Consensus 1027 i~~Wd~~~~~~I~sl~fs---p--d--g~~Latgs~dg~I~VWd~~t---------------~~~l~~~~~h~~~~~~It 1084 (1348)
...|....+.+|..|+|. . + .++|++=. ...+.|+..+- ...+..+..+...+....
T Consensus 71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred cceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 345876778999999998 2 1 23666554 55677776211 134455555555556888
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEeccCCCCceeEEeeeecccCCCCcc------cccceEEEEecCCCeEEEEECCCe
Q 000697 1085 KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV------RCSNVVVDWQQQSGYLYASGEVSS 1158 (1348)
Q Consensus 1085 sL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V------~si~~~v~ws~~~~~Ll~gg~Dg~ 1158 (1348)
+++|. ..+...||+....|.-.||++...... ....++....+.+.+ .+.-..+.|..+...|++.+. ..
T Consensus 150 Dv~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~--~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 150 DVAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKR--KSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred eEEec-cCccceEEEEeccCcEEEEEecccccc--CCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 99994 346679999999999999999221110 011111122222222 111124789888788887764 45
Q ss_pred EEEEECCCCceeee-eecCCCCCCeEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 000697 1159 IMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1348)
Q Consensus 1159 IrVWDl~t~~~~v~-~l~~~~~~~VtsL~~~s~dg~~LvsGs~DG~VrvwDlr~~ 1212 (1348)
+.++|+++.. ... -+.......|..+...+.+.++++.- ....|...|++..
T Consensus 226 l~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 8899999876 322 33333445588885444333333332 2367888888873
No 493
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.95 E-value=89 Score=37.71 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=105.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC----------------
Q 000697 1041 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG---------------- 1104 (1348)
Q Consensus 1041 l~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG---------------- 1104 (1348)
...+++++.++-......|+--|+++.+....+.... ..+-...|+.+.|+..++..-...
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~---~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD---DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T---TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc---ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 4466888877666556788888999887766666555 455556675345666554332110
Q ss_pred ----eEEEEeccCCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCC----e-EEEEECCCCceeeeeec
Q 000697 1105 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS----S-IMLWDLEKEQQMVNPIP 1175 (1348)
Q Consensus 1105 ----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg----~-IrVWDl~t~~~~v~~l~ 1175 (1348)
..+|..+....++.+.+. .....+.. +.|+|....+++-+..| . -|||-+++.......+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~------~~~~wlgH----~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVF------EDTDWLGH----VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp HC---EEEEEEETTT--EEEEE------EESS-EEE----EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred hhCCCceEEEEECCCCceeEEE------ecCccccC----cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 012222221123333321 11112222 67788888777765332 2 36776554321344444
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEe-----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000697 1176 SSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1250 (1348)
Q Consensus 1176 ~~~~~~VtsL~~~s~dg~~LvsGs-----~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG 1250 (1348)
.+....+..=.++.++|..+.--+ .+..|.-+|..+.+.. ... .. .+..-...+++ |++++-=+.|.
T Consensus 233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~-~~----p~~~H~~ss~D--g~L~vGDG~d~ 304 (386)
T PF14583_consen 233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLM-EM----PWCSHFMSSPD--GKLFVGDGGDA 304 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEE-EE-----SEEEEEE-TT--SSEEEEEE---
T ss_pred cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEE-eC----CceeeeEEcCC--CCEEEecCCCC
Confidence 443333444458888888766422 2446777888877632 111 11 22223333455 77665433332
Q ss_pred ----------------cEEEEEcCCCCcceEEEecCC----------C-CeEEEEEeCCCCEE-EEEeCCCcEEEEE
Q 000697 1251 ----------------DIQFLDIRNHKDAYLTIDAHR----------G-SLSALAVHRHAPII-ASGSAKQLIKVFS 1299 (1348)
Q Consensus 1251 ----------------~I~IWDlr~~~~~v~t~~~h~----------~-~VtsLa~spdg~~L-asgS~Dg~I~Vwd 1299 (1348)
.|.++++..+. . ..+..|. . .=....|+|||+.+ .++...|...||-
T Consensus 305 p~~v~~~~~~~~~~~p~i~~~~~~~~~-~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 305 PVDVADAGGYKIENDPWIYLFDVEAGR-F-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ----------------EEEEEETTTTE-E-EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CccccccccceecCCcEEEEeccccCc-e-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 35567776542 2 2222221 1 12457899999954 5556677777764
No 494
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=77 Score=36.51 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=108.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEeccCCCC
Q 000697 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1348)
Q Consensus 1037 ~I~sl~fspdg~~Latgs~dg~I~VWd~~t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~ 1116 (1348)
-+..+.++ +++...+..+.-++|.|+.+...-.....-+ ....++.+.-.|++..++.-|.-+-+.|+.+ ..
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-----t~gyaygv~vsGn~aYVadlddgfLivdvsd-ps 159 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSD-PS 159 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-----CCceEEEEEecCCEEEEeeccCcEEEEECCC-CC
Confidence 34555565 4577777888889999998654433222222 1123333345889999998666677889876 23
Q ss_pred ceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEE
Q 000697 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1196 (1348)
Q Consensus 1117 ~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~Lv 1196 (1348)
++.+.- ........... ++. .|++-+++..|+-+.+-|+.....++..-.-..+..+.++ +.+++..+++
T Consensus 160 sP~lag---rya~~~~d~~~----v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv-~vsdnr~y~v 229 (370)
T COG5276 160 SPQLAG---RYALPGGDTHD----VAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV-SVSDNRAYLV 229 (370)
T ss_pred Cceeee---eeccCCCCcee----EEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE-EecCCeeEEE
Confidence 344431 12211221122 233 3778888888888999998876522221111122236777 4444443443
Q ss_pred EEeCCCeEEEEECCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 000697 1197 AGFVDGSVRLYDVRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1260 (1348)
Q Consensus 1197 sGs~DG~VrvwDlr~~~~~v~~~~~~~-~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~ 1260 (1348)
. .+--+.+-|....+.. ..+...+ .....++.+.++ +++...+..+.-+.+-|+.+.
T Consensus 230 v--y~egvlivd~s~~ssp-~~~gsyet~~p~~~s~v~Vs----~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 V--YDEGVLIVDVSGPSSP-TVFGSYETSNPVSISTVPVS----GEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred E--cccceEEEecCCCCCc-eEeeccccCCcccccceecc----cceeeeeccccCceeEeccCC
Confidence 3 3444667777766522 2221111 111223333443 567777777777778888765
No 495
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=84.32 E-value=11 Score=42.92 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=107.1
Q ss_pred hhccChhhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000697 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1348)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg 619 (1348)
+..+.++.++.+|+..+. |..+..+.+.++.. ..|+..|..-.+.|....+..+|+ +++|.+|.-++-+|.
T Consensus 9 l~~~~l~~Ll~lL~~t~d-p~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-PFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHH
Confidence 444557788888886654 67888888888885 889999999999999999999999 899999999999999
Q ss_pred HhhccchHHHHhhhccCchhhhhhhccCC-CHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHh
Q 000697 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698 (1348)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 698 (1348)
.|=.+.+... .++..+...+-.++.++ ..+|.-+.+=+|..+--. .++ .+.+. .....++
T Consensus 80 Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~------------~~~--~~~l~---~~i~~ll 140 (254)
T PF04826_consen 80 NLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT------------NDY--HHMLA---NYIPDLL 140 (254)
T ss_pred hcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC------------cch--hhhHH---hhHHHHH
Confidence 8865543322 25555554444455543 567777888888877411 111 11221 1233456
Q ss_pred hhccCCChhhHHHHHHHHHHHH
Q 000697 699 TVVSDGSPLVRAEVAVALARFA 720 (1348)
Q Consensus 699 ~~~~D~sp~VR~e~~~~ls~~~ 720 (1348)
.+...|+..+|..++..|..+.
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhc
Confidence 6777788888888877776544
No 496
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.11 E-value=36 Score=37.54 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=88.6
Q ss_pred CEEEEEECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC------eEEEEeccCCCCcee
Q 000697 1048 PIVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG------NIRIWKDYDQKDKQK 1119 (1348)
Q Consensus 1048 ~~Latgs~dg~I~VWd~~--t~~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG------~IrIWdl~~~~~~~~ 1119 (1348)
+.|..+.....|.+|++. ..+.+.+|..-. .|..+.+ +..|++|+|--.+. .+|+|-.-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~----~V~~l~y--~~~GDYlvTlE~k~~~~~~~fvR~Y~NW------- 95 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG----RVLQLVY--SEAGDYLVTLEEKNKRSPVDFVRAYFNW------- 95 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchh----heeEEEe--ccccceEEEEEeecCCccceEEEEEEEh-------
Confidence 445444557789999988 346677777654 8999999 67899999974332 56665331
Q ss_pred EEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCCCEEEEEe
Q 000697 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1348)
Q Consensus 1120 lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg~~LvsGs 1199 (1348)
+.......+++. .++ |+-+.++..+.. ..+..+.+++. ..++.++++.+..|+++++.
T Consensus 96 -----r~~~~~~~~v~v---Ria-----G~~v~~~~~~~~------~~qleiiElPl--~~~p~ciaCC~~tG~LlVg~- 153 (215)
T PF14761_consen 96 -----RSQKEENSPVRV---RIA-----GHRVTPSFNESS------KDQLEIIELPL--SEPPLCIACCPVTGNLLVGC- 153 (215)
T ss_pred -----hhhcccCCcEEE---EEc-----ccccccCCCCcc------ccceEEEEecC--CCCCCEEEecCCCCCEEEEc-
Confidence 111112222221 000 111111111111 11102334443 33478888888899887743
Q ss_pred CCCeEEEEECCCCCeee---EeecCCC----CC--CCCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 000697 1200 VDGSVRLYDVRTPDMLV---CSTRPHT----QQ--VERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1257 (1348)
Q Consensus 1200 ~DG~VrvwDlr~~~~~v---~~~~~~~----~h--~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDl 1257 (1348)
++++.+|.++...... ..+ .+. .| +-....+++. +.++|..+. -.++++.+
T Consensus 154 -~~~l~lf~l~~~~~~~~~~~~l-DFe~~l~~~~~~~~p~~v~ic----~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 154 -GNKLVLFTLKYQTIQSEKFSFL-DFERSLIDHIDNFKPTQVAIC----EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred -CCEEEEEEEEEEEEecccccEE-echhhhhheecCceEEEEEEE----eeEEEEecC-CEEEEEEE
Confidence 5688899876443101 111 110 11 1224566665 447776654 46666654
No 497
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.63 E-value=41 Score=45.18 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchH
Q 000697 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684 (1348)
Q Consensus 605 d~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~ 684 (1348)
-..+.+++..+++++++..++...-.-..=..+.+.+.-.|...+|+||.+||=++..+|..-. +.
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p--------------e~ 861 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP--------------EE 861 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC--------------HH
Confidence 3468888888999999997654432222223334456667889999999999999999994421 11
Q ss_pred HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhcchhHHHH
Q 000697 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSI 730 (1348)
Q Consensus 685 ~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~ 730 (1348)
-.......+.-.++.+..|..-.||..+...+-+++.+|.-..+..
T Consensus 862 ~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 1223455567778889999999999999999999999887655544
No 498
>PRK13684 Ycf48-like protein; Provisional
Probab=83.39 E-value=1.1e+02 Score=36.53 Aligned_cols=279 Identities=11% Similarity=0.025 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCC-CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEecc
Q 000697 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1348)
Q Consensus 1035 ~~~I~sl~fspdg~~Latgs~dg~I~VWd~~t~-~~l~~~~~h~-~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1112 (1348)
...+.+|.|.....-+++|. +|. ||...++ +.-....... .....+.++.| .. +..+++ +..|.| |.-.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~--~~-~~~~~~-G~~g~i--~~S~ 115 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISF--KG-DEGWIV-GQPSLL--LHTT 115 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEE--cC-CcEEEe-CCCceE--EEEC
Confidence 35788999986666677775 443 4444332 2211111100 01135778877 22 333444 455543 3333
Q ss_pred CCCCceeEEeeeecccCCCCcccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEecCCC
Q 000697 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1348)
Q Consensus 1113 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ws~~~~~Ll~gg~Dg~IrVWDl~t~~~~v~~l~~~~~~~VtsL~~~s~dg 1192 (1348)
+.....+.+..-..+.++. .. .... ..+.+++++..|.|..=+- .++ .-..+.......+.++ ...+++
T Consensus 116 DgG~tW~~~~~~~~~~~~~---~~---i~~~--~~~~~~~~g~~G~i~~S~D-gG~-tW~~~~~~~~g~~~~i-~~~~~g 184 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPGSP---YL---ITAL--GPGTAEMATNVGAIYRTTD-GGK-NWEALVEDAAGVVRNL-RRSPDG 184 (334)
T ss_pred CCCCCCeEccCCcCCCCCc---eE---EEEE--CCCcceeeeccceEEEECC-CCC-CceeCcCCCcceEEEE-EECCCC
Confidence 3112222210000011111 11 1222 2233444555554433221 222 1122222223347787 455666
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCcceEEEecC--
Q 000697 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-- 1270 (1348)
Q Consensus 1193 ~~LvsGs~DG~VrvwDlr~~~~~v~~~~~~~~h~~~I~sl~~sp~~~g~~LaSgs~DG~I~IWDlr~~~~~v~t~~~h-- 1270 (1348)
.++ ..+..|.+..- .+.+......... .-...++++.+.++ ++.+++| ..|.+.+=....+ ........+
T Consensus 185 ~~v-~~g~~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d~G-~sW~~~~~~~~ 256 (334)
T PRK13684 185 KYV-AVSSRGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPDDL-ESWSKPIIPEI 256 (334)
T ss_pred eEE-EEeCCceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCC--CCEEEEe-cCCEEEEccCCCC-CccccccCCcc
Confidence 555 44556655432 1122111111111 22367889999988 7776665 4576643223332 222222211
Q ss_pred --CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCceEEEEeccCCcccccccCCeEEEEEeCCCCEEEEEECCCeEEEcC
Q 000697 1271 --RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1348 (1348)
Q Consensus 1271 --~~~VtsLa~spdg~~LasgS~Dg~I~Vwd~~g~~l~~i~~~h~~f~~~~~~~Vtslafspdg~~Latgs~Dg~I~IWd 1348 (1348)
...+.++.+++++.++++| .+|.|..=.-.|+.-...+. ... .......+.|..++..+++| ..|.|-.|+
T Consensus 257 ~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~-~~~----~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 257 TNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPV-GEE----VPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred ccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCc-CCC----CCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 2357889999988876665 45655432233444333322 111 11357788888777776655 577776653
No 499
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=52 Score=42.53 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=124.3
Q ss_pred CCchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChh---
Q 000697 460 PEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS--- 534 (1348)
Q Consensus 460 p~~lP~vLq~LlS~--~~rlral~ll~~Fld~~~wAv~lal~~gifpyvlklL~s~a~elr~~~~FIwa~il~~~~~--- 534 (1348)
|.-+|=|-.+|+.+ .-|.||++-+.||+-..|--+.. +.+-+-++|-+..+-.-.-.+-+...+|...+.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 35678888888874 57889999999999777754443 345555666543211111122333344444221
Q ss_pred ----hhhhhhh------ccCh------------------hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhh
Q 000697 535 ----CQVDLVK------DGGH------------------AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586 (1348)
Q Consensus 535 ----~q~~l~k------~~~~------------------~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~ 586 (1348)
|..++++ .++| -+++++|...+. +-.-..+=||++++.+-...+.++ +.
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdsskN~G-nA 292 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAG-NA 292 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccch-hH
Confidence 1111111 0000 123333332221 111122235666655544433321 11
Q ss_pred chHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH-HHhh---------hccCch----hhhhhhccCCCHHH
Q 000697 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA-QTIG---------RRADAP----AIYVPLLSEPQPEV 652 (1348)
Q Consensus 587 ~~~~~~~~~l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~~~~-~~~~---------~~~~~~----~~l~~ll~D~sP~V 652 (1348)
-+++-....+. ..+++.||-.++-+||+|+.+.+.. |.++ .+..+. ..++.+|+|+.+-.
T Consensus 293 ILYE~V~TI~~------I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 293 ILYECVRTIMD------IRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred HHHHHHHHHHh------ccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 22332222222 2678999999999999999775432 2222 223332 36899999999999
Q ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhc
Q 000697 653 RASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1348)
Q Consensus 653 Raa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 723 (1348)
|..++=.+-.++.. . . =..+...|+..+.-..+.++.+++..+..++.+|
T Consensus 367 krralELs~~lvn~-------------~----N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 367 KRRALELSYALVNE-------------S----N----VRVMVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHhcc-------------c----c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 99887666666621 0 0 1123445556555557788888887777777776
No 500
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=4.8 Score=49.13 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=86.9
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHh-hcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 000697 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH-LQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1348)
Q Consensus 547 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~-l~~~~~~~~d~~p~~R~w~~l~Lg~l~~~~ 625 (1348)
|.-..|.+.+ +.+|.--+|-+|.-..+-- +.+++..++.. .+ |.+-.||.+++++||-.|-+.
T Consensus 520 ~I~ell~d~d--s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avs-------D~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 520 YINELLYDKD--SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVS-------DGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred HHHHHhcCch--HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecc-------cCchHHHHHHHHheeeeEecC
Confidence 3334444444 5888877777766543221 33445555554 44 778899999999999887553
Q ss_pred hHHHHhhhccCchhhhhhhccCCCHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhhccCCC
Q 000697 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGS 705 (1348)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~s 705 (1348)
..+ +...+-.|.+.-.|-||+...+|||-+....+ .+.....|-.+..|+.
T Consensus 584 ~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G---------------------~~~a~diL~~L~~D~~ 634 (926)
T COG5116 584 RDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTG---------------------DKVATDILEALMYDTN 634 (926)
T ss_pred cch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCc---------------------cHHHHHHHHHHhhCcH
Confidence 321 22233333455689999999999998884321 0111222334678999
Q ss_pred hhhHHHHHHHHHHHHHhcchh
Q 000697 706 PLVRAEVAVALARFAFGHKQH 726 (1348)
Q Consensus 706 p~VR~e~~~~ls~~~~~~~~~ 726 (1348)
..||+.+.++++.+..++...
T Consensus 635 dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 635 DFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999888776544
Done!