BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000698
(1345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 365/1025 (35%), Positives = 546/1025 (53%), Gaps = 108/1025 (10%)
Query: 385 VDAKSPYKVLRLLNEQSGEERAVH-LWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENN 443
V A+ K L + Q G++ + L +DW I PGD +++ G + R+
Sbjct: 62 VYAQREEKHLTITASQEGDDLELCILKDDWVALQIKPGDIIHLEGNCSVDNTWTISRDTG 121
Query: 444 FLIVHPDVLVSGTRVAASFSCPRRSVLDERLK-CSERSISALLGTLLHQIFQAGLMKEIP 502
+LI++PD+L+SGT +A C RRSVL E+ K C + S L GT+LH IFQ
Sbjct: 122 YLILYPDLLISGTSIANGIRCLRRSVLSEKFKVCDKGSRQMLNGTMLHDIFQRATTCGF- 180
Query: 503 TMKFLEEYARLVLQ--KNIESLYACGVNENDIHKTLVEAIPKMLNWIILFK----DSQDL 556
T L+E A + K ++ +Y +N+ D+ + E +P + W F + Q +
Sbjct: 181 TDSVLQELAHHTVHGPKYLKEMYQLKLNQADVMGEIQEYLPSLSKWATDFMTHPLNQQQI 240
Query: 557 NTPTVDFGSDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPL 616
N T D + K+SE DIEE W+P++GLKG ID + RVKI K ++ + I+PL
Sbjct: 241 NR-TKSTAGDPTETTKVSEFLDIEENIWSPRFGLKGKIDVTARVKIHQK-SKAHLKIMPL 298
Query: 617 EFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVG 676
E KTGK N S+EHR+QV+LYTLL ER + ++GLL YL++ V R D
Sbjct: 299 ELKTGKESN---SIEHRSQVVLYTLLSQERR-EDPEAGLLLYLKTGNMYTVPGNRLDRRE 354
Query: 677 LIMRRNEFANDII----------KASTTQQLPPMLRAYGGNKECSGLGN----------- 715
L+ RNE + + K +T LP M+ K CS + N
Sbjct: 355 LLKIRNELSYYLTNVLHKSDNGSKETTLASLPAMIADRQACKYCSQMRNCALYNRSVEQQ 414
Query: 716 ------------MFDSHIYHLTTAHCSFLRHWDRLIDLEA--KEMQVVKNEIWCSRGSGG 761
+ HLT H + R W + LEA K+ ++ + IW S
Sbjct: 415 TENCYIPPEMIPVVQKETEHLTEDHLQYFRLWYLMCTLEANSKDSKMGRKNIWMMSSSER 474
Query: 762 NHFTGCLSSIVLDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMD 821
C+ +++ H ++ D ++++ F R+ P N
Sbjct: 475 EEDGQCIGNLIRTG---HVQTISDVQYLHSFQRRSGSVPATN------------------ 513
Query: 822 CTLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKPL-RLPGRNSSSDADSLLHEV 880
L SGD V++S E LA+++G I E+ +++ + L +LP + LL
Sbjct: 514 --LASGDRVVVSGEERFLALSTGYIKEVKDENITCILDRSLVKLP--------EDLL--- 560
Query: 881 WRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPALSY 938
+R+D +E NL +L S+ S +LR++I+D P F S+ D
Sbjct: 561 FRLDHEEGGGGLEFHLGNLSRLMENSSVSEKLRKLIIDFSKPNFVQHLSSILPPDAKDIV 620
Query: 939 IWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTN 998
+ LN Q++A+ +VL +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+
Sbjct: 621 ASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 680
Query: 999 SAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQK----HCLSAMNINSVEEIKKRLDQVKVV 1054
SAVDN+L+KLK + F+R+GR + +H ++Q+ A +I S+ +++ + VV
Sbjct: 681 SAVDNILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVV 740
Query: 1055 AVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTE 1114
A TC+G+ +P+ T ++FD CI+DEA Q + P+ LGPL FA +FVLVGDH QLPPLV+S E
Sbjct: 741 ATTCMGVNHPIFTRRRFDFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAE 800
Query: 1115 ARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKI 1174
ARE GM SLF+RL E + +A+ L QYRM IM LSN L+Y RL C SD ++NA +
Sbjct: 801 ARELGMSESLFKRL-ERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVV 859
Query: 1175 KVSDLSSC-----------SPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
++ + + S W+K+ L P PV F+NT+ +PA E ++ ++N +EA L
Sbjct: 860 QLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKL 919
Query: 1224 IAKITQELVKNEIEGKDIGIITPYNSQANLIR---HSLSVSSVEIHTIDKYQGRDKDCIL 1280
+ +T+ +K DIGII PY Q +I +SLS S+VE++T+DKYQGRDK I+
Sbjct: 920 VFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVII 979
Query: 1281 VSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQ 1340
VSFVRS+ + + LL DW R+NVALTRAK KLIM+G TL++ L+ LI + +
Sbjct: 980 VSFVRSNIDGK--LGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTE 1037
Query: 1341 SGILN 1345
+ I +
Sbjct: 1038 NQIYD 1042
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 361/1009 (35%), Positives = 540/1009 (53%), Gaps = 121/1009 (11%)
Query: 409 LWEDWFHTVIAPGDTVNVIGEFDDQGKCD-----VGRENNFLIVHPDVLVSGTRVAASFS 463
L DW + PGD +++ +G C + + +LI++PD+L+SGT +A+S
Sbjct: 83 LRNDWCSVPVEPGDIIHL------EGDCISNTWIIDEDFGYLILYPDMLISGTSIASSIR 136
Query: 464 CPRRSVLDERLKCSERSI-SALLGTLLHQIFQAGLMKEIPTMKFLEEYARLVLQ--KNIE 520
C RR+VL E + S+ + L+GT+LH++FQ + K L+E A +Q ++++
Sbjct: 137 CMRRAVLSETFRSSDPATRQMLIGTVLHEVFQKAVSDSFAPEK-LQELASQTIQEIRHLK 195
Query: 521 SLYACGVNENDIHKTLVEAIPKMLNWIILF---KDSQDLNTPTVDFGSDGLKK-----LK 572
+Y +N+++I + + E +P W F S D + SDG ++
Sbjct: 196 EMYRLKLNQDEIKQEVEEYLPSFSKWAGDFMHKHTSTDFPQMQLSLPSDGSNSNSTCNIE 255
Query: 573 ISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEFKTGKIPNGQSSMEH 632
++ DIEE W+P++GLKG ID ++ VKI + + I+PLE KTGK N S+EH
Sbjct: 256 VTNSLDIEESIWSPRFGLKGKIDVTVGVKIH-RGCKTKYKIMPLELKTGKESN---SIEH 311
Query: 633 RAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEFANDI---I 689
R+Q++LYTLL ER ++GLL YL++ Q V + D L+ RN+ A + I
Sbjct: 312 RSQLVLYTLLSQERRADP-EAGLLLYLKTGQMYPVPAKHLDKRELLRLRNQMAFSLFHRI 370
Query: 690 KASTTQQ-----LPPMLRAYGGNKECSGLGN-----------MFDSHI------------ 721
ST ++ LP ++ K CS +GN M DS +
Sbjct: 371 NKSTGEKTELAPLPQIIEEQQTCKYCSQMGNCALYSRAVEQQMEDSSVPTSMWPKIKEET 430
Query: 722 YHLTTAHCSFLRHWDRLIDLEAKEMQVVKN--EIWCSRGSGGNHFTGCLSSIVLDASNEH 779
HL H + W ++ LE++ +N IW S C+ S++ EH
Sbjct: 431 QHLKPIHLEYFSLWCLMLTLESQSKDNKRNYQHIWLMPASEMEESGSCIGSLI---RIEH 487
Query: 780 QKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVILSTESDRL 839
K+ D +++++F R++ AIP + L +GD +ILS E L
Sbjct: 488 VKTVCDGQYLHNFQRKN----------------GAIPITN----LMAGDRIILSGEERTL 527
Query: 840 -AVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFSVMRYN 898
A++ G + EI+ V+ S RN S +S L +R+D++E N
Sbjct: 528 FALSRGYVKEINSTTVTCSLD-------RNLSGLPESTL---FRLDQEEKNCDIDTPLGN 577
Query: 899 LVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPALSYIWSEKSLNDDQRRAIIKV 956
L +L + S +LR +I+D P+F S SV + + K LN QR+A+ KV
Sbjct: 578 LSKLMENTRASQKLRDLIIDFREPQFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKKV 637
Query: 957 LTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQSIDFV 1016
L +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+SAVDN+L+KL I F+
Sbjct: 638 LLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFL 697
Query: 1017 RIGRHEVVHKEIQKH-----CLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLTDKKF 1071
R+G+ + VH +IQK C S +I S+ +++ + +VA TC+GI +P+ + K F
Sbjct: 698 RLGQIQKVHPDIQKFTEEEICRSK-SIKSLALLEELYNSQLIVATTCMGINHPIFSRKTF 756
Query: 1072 DVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEE 1131
D CI+DEA Q + PV LGPL F+ +FVLVGDH QLPPLV + EAR GM SLF+RL E+
Sbjct: 757 DFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRL-EQ 815
Query: 1132 HPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLS----------- 1180
+ A+ L QYRM IM LSN L Y +L CGSD++ANA I + +
Sbjct: 816 NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYAD 875
Query: 1181 -SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGK 1239
S +PWL A P PV F+NT +PA E + ++N +EA L+ +T +K +
Sbjct: 876 YSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPS 935
Query: 1240 DIGIITPYNSQANLIRHSL---SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSS 1296
DIGII PY Q +I L SV VE++T+D+YQGRDK ++VSFVRS+E+
Sbjct: 936 DIGIIAPYRQQLKVISDLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNED--GTLGE 993
Query: 1297 LLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGILN 1345
LL DW R+NVA+TRAK KLI++G +LS+ P L+ L+N + + I++
Sbjct: 994 LLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHLNSEKLIID 1042
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 359/1011 (35%), Positives = 536/1011 (53%), Gaps = 108/1011 (10%)
Query: 400 QSGEERAVHLWED-WFHTVIAPGDTVNVIGEFDDQGKCDVGRENNFLIVHPDVLVSGTRV 458
Q GE+ + + + W + PGD +++ G+ + V + + I+ PD+L+SGT V
Sbjct: 73 QEGEQEVLCILRNGWSSVPVEPGDIIHIEGDCTSEPWI-VDDDFGYFILSPDMLISGTSV 131
Query: 459 AASFSCPRRSVLDERLKCSERSI-SALLGTLLHQIFQAGLMKEIPTMKFLEEYARLVLQ- 516
A+S C RR+VL E + S+ + L+GT+LH++FQ + + K L+E A L+
Sbjct: 132 ASSIRCLRRAVLSETFRVSDTATRQMLIGTILHEVFQKAISESFAPEK-LQELALQTLRE 190
Query: 517 -KNIESLYACGVNENDIHKTLVEAIPKMLNWIILFKDS--------QDLNTPTVDFGSDG 567
++++ +Y ++++++ + E +P W F L+ P+
Sbjct: 191 VRHLKEMYRLNLSQDEVRCEVEEYLPSFSKWADEFMHKGTKAEFPQMHLSLPSDSSDRSS 250
Query: 568 LKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEFKTGKIPNGQ 627
+++ + DIEE W+P++GLKG ID ++ VKI + + I+PLE KTGK N
Sbjct: 251 PCNIEVVKSLDIEESIWSPRFGLKGKIDVTVGVKIH-RDCKTKYKIMPLELKTGKESN-- 307
Query: 628 SSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEFAND 687
S+EHR QVILYTLL ER + ++G L YL++ Q V D L+ RN+ A
Sbjct: 308 -SIEHRGQVILYTLLSQERR-EDPEAGWLLYLKTGQMYPVPANHLDKRELLKLRNQLAFS 365
Query: 688 II----KASTTQQ-----LPPMLRAYGGNKECSGLGN----------MFDSHI------- 721
++ +A+ ++ LP ++ K CS +GN + D+ I
Sbjct: 366 LLHRVSRAAAGEEARLLALPQIIEEEKTCKYCSQMGNCALYSRAVEQVHDTSIPEGMRSK 425
Query: 722 -----YHLTTAHCSFLRHWDRLIDLEAKEMQVVKNE--IWCSRGSGGNHFTGCLSSIVLD 774
HLT AH + W ++ LE++ K+ IW + S C+ S+V
Sbjct: 426 IQEGTQHLTRAHLKYFSLWCLMLTLESQSKDTKKSHQSIWLTPASKLEESGNCIGSLV-- 483
Query: 775 ASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVILST 834
E K D ++++F R++ P P N L +GD +ILS
Sbjct: 484 -RTEPVKRVCDGHYLHNFQRKNGPMPATN--------------------LMAGDRIILSG 522
Query: 835 ESDRL-AVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFS 893
E +L A++ G + I V+ L RN S+ ++ L +R+D++E +
Sbjct: 523 EERKLFALSKGYVKRIDTAAVTC-------LLDRNLSTLPETTL---FRLDREEKHGDIN 572
Query: 894 VMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPALSYIWSEKSLNDDQRR 951
NL +L + S +LR +I+D + P+F + SV D + K LN QR+
Sbjct: 573 TPLGNLSKLMENTDSSKRLRELIIDFKEPQFIAYLSSVLPHDAKDTVANILKGLNKPQRQ 632
Query: 952 AIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQ 1011
A+ KVL +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+SAVDN+L+KL
Sbjct: 633 AMKKVLLSKDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSYTHSAVDNILLKLAKF 692
Query: 1012 SIDFVRIGRHEVVHKEIQKHCLSAM----NINSVEEIKKRLDQVKVVAVTCLGITNPLLT 1067
I F+R+G+ VH +IQK M +I S+ +++ + VVA TC+GI++P+ +
Sbjct: 693 KIGFLRLGQSHKVHPDIQKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFS 752
Query: 1068 DKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRR 1127
K FD CI+DEA Q + P+ LGPL F+ +FVLVGDH QLPPLV + EAR GM SLF+R
Sbjct: 753 RKTFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKR 812
Query: 1128 LSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLS------- 1180
L E + A+ L QYRM + IM LSN L Y +L CGSD +ANA I + +L
Sbjct: 813 L-ERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFY 871
Query: 1181 ---SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIE 1237
S +PWL P PV F+NTD +PA E ++ ++N EA LI +T +K
Sbjct: 872 ADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCS 931
Query: 1238 GKDIGIITPYNSQANLIRHSL---SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCT 1294
DIGII PY Q I L SV VE++T+DKYQGRDK ILVSFVRS+E+
Sbjct: 932 PSDIGIIAPYRQQLRTITDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNED--GTL 989
Query: 1295 SSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGILN 1345
LL DW R+NVA+TRAK KLI++GS +L + P L+ L + + + I N
Sbjct: 990 GELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHLNAEQLISN 1040
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 353/1030 (34%), Positives = 538/1030 (52%), Gaps = 126/1030 (12%)
Query: 398 NEQSGEERAVH--------------LWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENN 443
NE+ EE+ +H L W + PGD V++ G+ + + +
Sbjct: 58 NERGAEEKRLHVTASQDREHEVLCILRNGWSSVPVEPGDIVHLEGDCTSEPWI-IDDDFG 116
Query: 444 FLIVHPDVLVSGTRVAASFSCPRRSVLDERLKCSERSI-SALLGTLLHQIFQAGLMKEIP 502
+ I++PD+++SGT VA+S C RR+VL E + S+ + L+GT+LH++FQ + +
Sbjct: 117 YFILYPDMMISGTSVASSIRCLRRAVLSETFRGSDPATRQMLIGTILHEVFQKAISESFA 176
Query: 503 TMKFLEEYARLVLQ--KNIESLYACGVNENDIHKTLVEAIPKMLNWIILFKD---SQDLN 557
+ L+E A L+ ++++ +Y +++++I + E +P W F S +
Sbjct: 177 PER-LQELALQTLREVRHLKEMYRLNLSQDEILCEVEEYLPSFSKWAEDFMRKGPSSEFP 235
Query: 558 TPTVDFGSDGLKK-----LKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGM 612
+ SDG + +++ + DIEE W+P++GLKG ID ++ VKI + ++
Sbjct: 236 QMQLSLPSDGSNRSSPCNIEVVKSLDIEESIWSPRFGLKGKIDVTVGVKIH-RDCKMKYK 294
Query: 613 ILPLEFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRS 672
++PLE KTGK N S+EHR+QV+LYTLL ER + ++G L YL++ Q V
Sbjct: 295 VMPLELKTGKESN---SIEHRSQVVLYTLLSQERR-EDPEAGWLLYLKTGQMYPVPANHL 350
Query: 673 DLVGLIMRRNEFANDII----KASTTQQ-----LPPMLRAYGGNKECSGLGNM------- 716
D L+ RN A ++ +A+ ++ LP ++ K CS +GN
Sbjct: 351 DKRELLKLRNWLAASLLHRVSRAAPGEEARLSALPQIIEEEKTCKYCSQIGNCALYSRAV 410
Query: 717 ----------------FDSHIYHLTTAHCSFLRHWDRLIDLEA--KEMQVVKNEIWCSRG 758
HL AH + W ++ LE+ K+ + IW +
Sbjct: 411 EEQGDDASIPEAMLSKIQEETRHLQLAHLKYFSLWCLMLTLESQSKDNRKTHQSIWLTPA 470
Query: 759 SGGNHFTGCLSSIVLDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTK 818
S C+ ++V E D +++++F R++ P P N
Sbjct: 471 SELEESGNCVGNLV---RTEPVSRVCDGQYLHNFQRKNGPMPATN--------------- 512
Query: 819 DMDCTLRSGDYVILSTESDRL-AVASGLITEISRFHVSVSFSKPLR-LPGRNSSSDADSL 876
L +GD +ILS E +L A++ G + ++++ V+ + L LP
Sbjct: 513 -----LMAGDRIILSGEERKLFALSKGYVKKMNKAAVTCLLDRNLSTLPATT-------- 559
Query: 877 LHEVWRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDP 934
V+R+D++E S NL +L + S +LR +I+D P+F + SV D
Sbjct: 560 ---VFRLDREERHGDISTPLGNLSKLMESTDPSKRLRELIIDFREPQFIAYLSSVLPHDA 616
Query: 935 ALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLT 994
+ K LN QR+A+ +VL +KDY LI+GMPGTGKT+T+ V+ L G S+LLT
Sbjct: 617 KDTVANILKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSACGFSVLLT 676
Query: 995 SYTNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQK----HCLSAMNINSVEEIKKRLDQ 1050
SYT+SAVDN+L+KL + F+R+G+ VH +IQK + +I S+ +++ +
Sbjct: 677 SYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNS 736
Query: 1051 VKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLV 1110
+VA TC+GI +P+ + K FD CI+DEA Q + PV LGPL F+ +FVLVGDH QLPPLV
Sbjct: 737 HPIVATTCMGINHPIFSRKTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLV 796
Query: 1111 QSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIA 1170
+ EAR GM SLF+RL E + A+ L QYRM + IM LSN L Y +L CGSD +A
Sbjct: 797 VNREARALGMSESLFKRL-ERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVA 855
Query: 1171 NAKIKVSDLS------------SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNP 1218
NA + + +L S SPWL L P PV F+NTD +PA E ++ ++N
Sbjct: 856 NAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNV 915
Query: 1219 VEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL---SVSSVEIHTIDKYQGRD 1275
EA LI +T +K DIG+I PY Q +I L SV VE++T+DKYQGRD
Sbjct: 916 TEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSSVGMVEVNTVDKYQGRD 975
Query: 1276 KDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLIN 1335
K ILVSFVRS+E+ LL DW R+NVALTRAK KLI++GS +L + P L L +
Sbjct: 976 KSLILVSFVRSNED--GTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFD 1033
Query: 1336 KVGEQSGILN 1345
+ + IL+
Sbjct: 1034 HLNAEQLILD 1043
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 359/1009 (35%), Positives = 530/1009 (52%), Gaps = 121/1009 (11%)
Query: 409 LWEDWFHTVIAPGDTVNVIGEFDDQGKCD-----VGRENNFLIVHPDVLVSGTRVAASFS 463
L DW + PGD +++ +G C + ++ +LI++PD+L+SGT +A+S
Sbjct: 82 LRNDWCSVPVEPGDIIHL------EGDCTSDTWIIDKDFGYLILYPDMLISGTSIASSIR 135
Query: 464 CPRRSVLDERLKCSERSI-SALLGTLLHQIFQAGLMKEIPTMKFLEEYARLVLQ--KNIE 520
C RR+VL E + S+ + L+GT+LH++FQ + K L+E A +Q ++++
Sbjct: 136 CMRRAVLSETFRSSDPATRQMLIGTVLHEVFQKAINNSFAPEK-LQELAFQTIQEIRHLK 194
Query: 521 SLYACGVNENDIHKTLVEAIPKMLNWIILF---KDSQDLNTPTVDFGSDGLK-----KLK 572
+Y +++++I + + + +P W F S D + SD K ++
Sbjct: 195 EMYRLNLSQDEIKQEVEDYLPSFCKWAGDFMHKNTSTDFPQMQLSLPSDNSKDNSTCNIE 254
Query: 573 ISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEFKTGKIPNGQSSMEH 632
+ + DIEE W+P++GLKG ID ++ VKI + + I+PLE KTGK N S+EH
Sbjct: 255 VVKPMDIEESIWSPRFGLKGKIDVTVGVKIH-RGYKTKYKIMPLELKTGKESN---SIEH 310
Query: 633 RAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEFA----NDI 688
R+QV+LYTLL ER ++GLL YL++ Q V D L+ RN+ A + I
Sbjct: 311 RSQVVLYTLLSQERRADP-EAGLLLYLKTGQMYPVPANHLDKRELLKLRNQMAFSLFHRI 369
Query: 689 IKASTTQQ-----LPPMLRAYGGNKECSGLGNM-----------------------FDSH 720
K++T Q+ LP ++ K CS +GN +
Sbjct: 370 SKSATRQKTQLASLPQIIEEEKTCKYCSQIGNCALYSRAVEQQMDCSSVPIVMLPKIEEE 429
Query: 721 IYHLTTAHCSFLRHWDRLIDLEAKEMQVVKNE--IWCSRGSGGNHFTGCLSSIVLDASNE 778
HL H + W ++ LE++ KN IW S C+ +++ E
Sbjct: 430 TQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSCIGNLI---RME 486
Query: 779 HQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVILSTESDR 838
H K D +++++F +H AIP + L +GD VI+S E
Sbjct: 487 HVKIVCDGQYLHNFQCKH----------------GAIPVTN----LMAGDRVIVSGEERS 526
Query: 839 L-AVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFSVMRY 897
L A++ G + EI+ V+ L RN S +S L +R+D++E
Sbjct: 527 LFALSRGYVKEINMTTVTC-------LLDRNLSVLPESTL---FRLDQEEKNCDIDTPLG 576
Query: 898 NLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPALSYIWSEKSLNDDQRRAIIK 955
NL +L + S +LR +I+D P+F S SV D + K LN QR+A+ K
Sbjct: 577 NLSKLMENTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVACILKGLNKPQRQAMKK 636
Query: 956 VLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQSIDF 1015
VL +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+SAVDN+L+KL I F
Sbjct: 637 VLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGF 696
Query: 1016 VRIGRHEVVHKEIQKH-----CLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLTDKK 1070
+R+G+ + VH IQ+ C S +I S+ +++ + +VA TC+GI +P+ + K
Sbjct: 697 LRLGQIQKVHPAIQQFTEQEICRSK-SIKSLALLEELYNSQLIVATTCMGINHPIFSRKI 755
Query: 1071 FDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSE 1130
FD CI+DEA Q + P+ LGPL F+ +FVLVGDH QLPPLV + EAR GM SLF+RL E
Sbjct: 756 FDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRL-E 814
Query: 1131 EHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLS---------- 1180
++ A+ L QYRM IM LSN L Y +L CGSD++ANA I +
Sbjct: 815 QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA 874
Query: 1181 --SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEG 1238
S +PWL P PV F+NTD +PA E + ++N EA LI +T VK
Sbjct: 875 DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP 934
Query: 1239 KDIGIITPYNSQANLIRHSL--SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSS 1296
DIGII PY Q +I L S+ VE++T+DKYQGRDK +LVSFVRS N
Sbjct: 935 SDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRS--NKDGTVGE 992
Query: 1297 LLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGILN 1345
LL DW R+NVA+TRAK KLI++G +L+ P L+ L+N + + I++
Sbjct: 993 LLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIID 1041
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus gallus
GN=DNA2 PE=2 SV=2
Length = 992
Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust.
Identities = 352/1025 (34%), Positives = 533/1025 (52%), Gaps = 140/1025 (13%)
Query: 386 DAKSPYKVLRLLNEQS-GEERAVHLWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENNF 444
+ + P K L + ++ S G+ L W + PGD V++ G+ G + ++ +
Sbjct: 28 EGRDPEKHLAVSSDPSLGDTELCVLQNGWESVPVVPGDIVHLEGDCSS-GTWVINEQSGY 86
Query: 445 LIVHPDVLVSGTRVAASFSCPRRSVLDERLKCSE-RSISALLGTLLHQIFQAGLMKEIPT 503
LI++PD+L+SGT +++S C R++VL ER + SE S L+GT+LH+IFQ + +
Sbjct: 87 LILYPDLLLSGTTISSSIRCMRKAVLSERFRGSECGSRQTLVGTILHEIFQQSVTNNLSP 146
Query: 504 MKFLEEYARLVL--QKNIESLYACGVNENDIHKTLVEAIPKMLNWIILF------KDSQD 555
K +EE A+ ++ QK ++ +Y + + +I + + E +P W F ++
Sbjct: 147 EK-VEELAKKIVYGQKYLKEMYHLKLKQTEIMQEIEEYLPSFFKWTEDFVRNPANQNKMQ 205
Query: 556 LNTPTVDFGSDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILP 615
L P+ + D ++I ++ DIEE W+P++GLKG ID + RVKI ++ I I+P
Sbjct: 206 LKLPSENKTGDCSSTVEIVDILDIEENIWSPRFGLKGKIDVTARVKIH-RQGGIQSRIMP 264
Query: 616 LEFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLV 675
LE K+GK N S+EHR+QVILYTLL ER + ++G L YL++ V R D
Sbjct: 265 LELKSGKESN---SVEHRSQVILYTLLNLERRVDP-EAGFLLYLKTGTMYPVTGTRMDRR 320
Query: 676 GLIMRRNEFA----NDIIKASTTQQ------LPPMLRAYGGNKECSGLGNMF-------- 717
LI RN+ A + K++ +Q LPP++ K CS + N F
Sbjct: 321 ELIKLRNQVAFYLMHSTYKSAVGRQQSQLAALPPLIDDSQACKYCSQIHNCFLYSRAVEE 380
Query: 718 ---------------DSHIYHLTTAHCSFLRHWDRLIDLEAKEMQVVKN--EIWCSRGSG 760
+ HL +H + W ++ LE + K IW
Sbjct: 381 RMASVSFPPALIPIIEKETQHLKPSHLEYFSLWYLMLTLEMQSGDSKKGYKNIWMIPSLE 440
Query: 761 GNHFTGCLSSIV-LDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKD 819
C+ +++ +D E + ++++ F R++ P N
Sbjct: 441 REKAGDCVGNMIRVDQVQE----VSEGQYLHSFQRKNGAVPGAN---------------- 480
Query: 820 MDCTLRSGDYVILSTESDRL-AVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLH 878
L GD V++S E + L +A+G + EIS +S L GRN S +S
Sbjct: 481 ----LLVGDRVVVSGEENGLLGLATGYVREISATKISC-------LLGRNLSKLPES--- 526
Query: 879 EVWRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPAL 936
+R+D +E S V NL +L S S +LR +I+D PRF SV +
Sbjct: 527 TTFRLDHEEGDCSIGVPFENLSKLMKDSPVSEKLRNLIIDFHKPRFIQHLSSVLPPEAKE 586
Query: 937 SYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSY 996
+ K LN Q++A+ +VL ++DY LI+GMPGTGKT+T+ V+ L G S+LLTS+
Sbjct: 587 AVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSF 646
Query: 997 TNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKH-----CLSAMNINSVEEIKKRLDQV 1051
T++AVDN+L+KL + F+R+GR + VH +I+K C S +I SV ++++ +
Sbjct: 647 THTAVDNILLKLAKFKVGFLRLGRAQKVHPDIRKFTEEEICRSK-SIKSVTDLEELYNSQ 705
Query: 1052 KVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQ 1111
VVA C+GI +P+ K+FD CI+DEA Q + P+ LGPL + +FVLVGDH QLPPLVQ
Sbjct: 706 PVVATACMGINHPIFVQKQFDFCIVDEASQISQPICLGPLFCSKRFVLVGDHQQLPPLVQ 765
Query: 1112 STEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIAN 1171
++EAR+ GM SLF+RL E++ A+ L QYRM IM LSN L+Y +L CGS++++N
Sbjct: 766 NSEARDLGMSESLFKRL-EQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSN 824
Query: 1172 AKIKVSDLS--------SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
A + +L + WLKE L P +PV F+NT+
Sbjct: 825 ATANLPNLKMLKLEFADASKTWLKEVLEPDKPVCFLNTE--------------------- 863
Query: 1224 IAKITQELVKNEIEGKDIGIITPYNSQANLIRH---SLSVSSVEIHTIDKYQGRDKDCIL 1280
K DIGII+PY Q +I L + VE++TIDKYQGRDK I+
Sbjct: 864 ---------KAGCRPSDIGIISPYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIII 914
Query: 1281 VSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQ 1340
VSFVR+S N N +LL DW R+NVA+TRAK KLIMVG +L + P L+ L+ + +
Sbjct: 915 VSFVRNS-NDEN-LGALLKDWRRLNVAITRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSE 972
Query: 1341 SGILN 1345
+ I N
Sbjct: 973 AMIFN 977
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust.
Identities = 325/1048 (31%), Positives = 537/1048 (51%), Gaps = 137/1048 (13%)
Query: 402 GEERAVHLWEDWFHTVIAPGDTVNVI-GE--------FDDQGKCDVGRENNFLIVHPDVL 452
GE+ +V + W + GD +++I G+ DD+ +N L+++PDVL
Sbjct: 448 GEQSSVVVRHPWVYLEFEVGDVIHIIEGKNIENKRLLSDDKNPKTQLANDNLLVLNPDVL 507
Query: 453 VSGTRVAASFSCPRRSVLDERLK--CSERSISALLGTLLHQIFQAGLMKEIP----TMKF 506
S T V +S C RRS+L + + E S+ LG ++H++ Q + ++ +M+
Sbjct: 508 FSATSVGSSVGCLRRSILQMQFQDPRGEPSLVMTLGNIVHELLQDSIKYKLSHNKISMEI 567
Query: 507 LEEYARLVLQKNIESLYACGVNENDIHKTLV--EAIPKMLNWIILFKDSQDLNTPTVDFG 564
+ + +L+ S+ C E K LV E +L ++ F + T G
Sbjct: 568 IIQKLDSLLETYSFSIIICN-EEIQYVKELVMKEHAENILYFVNKFVSKSNYGCYTSISG 626
Query: 565 SDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEFKTGKIP 624
+ + + IS V DIEE W+P YGLKG +DA++ +E+ + I +PLE KTGK
Sbjct: 627 TRRTQPISISNVIDIEENIWSPIYGLKGFLDATVEANVENNKKHI----VPLEVKTGK-- 680
Query: 625 NGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEF 684
S+ + Q ++YTLL+++RY I+ LLY+ + + ++M RN
Sbjct: 681 --SRSVSYEVQGLIYTLLLNDRYEIPIEFFLLYFTRDKNMTKFPSVLHSIKHILMSRNRM 738
Query: 685 ANDII--------KASTTQQLPPMLRAYG-------------------GNKECSGL---- 713
+ + +A + +LPP+LR G E SGL
Sbjct: 739 SMNFKHQLQEVFGQAQSRFELPPLLRDSSCDSCFIKESCMVLNKLLEDGTPEESGLVEGE 798
Query: 714 GNMFDSHIYHLTTAHCSFLRHWDRLIDLEAKEMQVVKNEIWCSRGSGGNHFTG-CLSSIV 772
+ +H+ + F ++ LI E + V E++ GS +G CLS +V
Sbjct: 799 FEILTNHLSQNLANYKEFFTKYNDLITKEESSITCVNKELFLLDGSTRESRSGRCLSGLV 858
Query: 773 LDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVIL 832
+ EH+K+ + ++Y F R+ N ++ S++ + I + D+VI+
Sbjct: 859 VSEVVEHEKT--EGAYIYCFSRRR------NDNNSQSMLSSQIA---------ANDFVII 901
Query: 833 STESDRLAVASGLITEISRFHVSVSFSKPL---RLPGRNSS-----SDADSLLHE----- 879
S E + G + I+ + +S + L RL + S +S L +
Sbjct: 902 SDEEGHFCLCQGRVQFINPAKIGISVKRKLLNNRLLDKEKGVTTIQSVVESELEQSSLIA 961
Query: 880 -----VWRIDKDEIMTSFSVMRYNLVQLFLQSAQ----------------------SSQL 912
+RIDK++I S S+ R+NL+ LFL + + L
Sbjct: 962 TQNLVTYRIDKNDIQQSLSLARFNLLSLFLPAVSPGVDIVDERSKLCRKTKRSDGGNEIL 1021
Query: 913 RRMIVDLEAPRFDSGSVFSQDPALSYIWS-EKSLNDDQRRAIIKVLTAKDYALILGMPGT 971
R ++VD AP+F + DP + Y S + +LN +Q+ AI KV+ A+DYALILGMPGT
Sbjct: 1022 RSLLVDNRAPKFRDAN---DDPVIPYKLSKDTTLNLNQKEAIDKVMRAEDYALILGMPGT 1078
Query: 972 GKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKH 1031
GKT+ + +K L+ G +LLTSYT+SAVDN+LIKL++ +I +R+G VH + QK+
Sbjct: 1079 GKTTVIAEIIKILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPDTQKY 1138
Query: 1032 CLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLT--DKKFDVCIMDEAGQTTLPVSLG 1089
+ ++ S + +++ VVA TCLGI + L T +K FD I+DEA Q ++PV+LG
Sbjct: 1139 VPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPVALG 1198
Query: 1090 PLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGI 1149
PL + ++F++VGDHYQLPPLV++ AR G+E SLF+ E+HP++++ L QYRMC I
Sbjct: 1199 PLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDI 1258
Query: 1150 MELSNALIYGDRLSCGSDEIANAKIKV----------SDLSSCSPWLKEALNPCRPVIFV 1199
+ LSN LIY ++L CG++E+ +++ ++ ++ WL++ L P R V+F+
Sbjct: 1259 VTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFL 1318
Query: 1200 NTDMLP-AYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL 1258
N D P E + + N EA L + + ++ + + +DIG++T Y +Q L++
Sbjct: 1319 NYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIF 1378
Query: 1259 S---VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKL 1315
+ +EI T D++QGRDK CI++S VR N + +LL + R+NVA+TRAK KL
Sbjct: 1379 NKNVYDGLEILTADQFQGRDKKCIIISMVR--RNSQLNGGALLKELRRVNVAMTRAKSKL 1436
Query: 1316 IMVGSCRTLSKVPLLKLLINKVGEQSGI 1343
I++GS T+ VP +K +N + E++ +
Sbjct: 1437 IIIGSKSTIGSVPEIKSFVNLLEERNWV 1464
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 331/1000 (33%), Positives = 509/1000 (50%), Gaps = 100/1000 (10%)
Query: 391 YKVLRLLNEQSGEERAVHLWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENNFLIVHPD 450
++ L+L+ E + + L DW T I GD++ V FD V + +I+HP
Sbjct: 377 FRQLKLILEANDILHQLFLRGDWTETSIFVGDSIRVEATFDKDNTAIVDNDKGLIIIHPK 436
Query: 451 VLVSGTRVAASFSCPRRSVLDERLKCSERSISALL-GTLLHQIFQAGLMKEIPTMKFLEE 509
+L+S T VA+SF C R++V+ +R+ A++ G +LH FQ L + I ++ ++
Sbjct: 437 ILMSATAVASSFPCLRKAVISDRVGIYGPPTKAMVTGNILHDFFQHALYRGIDALENVDI 496
Query: 510 YARLVLQKNIESLYACGVNENDIHKTLVEAIPKMLNWII---LFKDSQDLNTPTVDFGSD 566
++ I +Y ++ ++I + L +P +L I+ L D N ++
Sbjct: 497 NLETSIKTYISDIYFADLSLDEIREELDARLP-LLKSIVERYLISKKNDNNNESI----- 550
Query: 567 GLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEFKTGKIPNG 626
IS + DIEE W+P++GLKG IDA++ V + K + + LPLE KTG+ +
Sbjct: 551 -----HISRLLDIEESIWSPRFGLKGNIDATVEVVLTEKPESSSTLTLPLELKTGRYVD- 604
Query: 627 QSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEFAN 686
++ H AQ +LYTLL+S+RY + + LL YL++ + ++ S L GLIM RN A
Sbjct: 605 --NISHFAQSLLYTLLISDRYGINTNQALLCYLENSTIKNLVASNSQLRGLIMTRNSLAQ 662
Query: 687 DIIKASTTQQLPPMLRAYGGNKECS--------------------GLGNMFDSHIYHLTT 726
+ S LP M+ CS GL ++ + +
Sbjct: 663 HNFRRS----LPEMISNRKICDHCSLVSECLFFQKMSDKGVANSNGLTESWNEWMREVKD 718
Query: 727 AHCSFLRHWDRLIDLEAKEMQVVKNEIWCSRGSGGNHFTGCLSSIVLDASNEHQKSYRDN 786
F + W++L++ E + + + + ++ + L + + + D
Sbjct: 719 EDLEFYKKWEKLLNQEERLLLLKRGDVLTFDTEELEAYGKTLYPLYITKEDIVCLEIDDR 778
Query: 787 RFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVILSTESDRLAVASGLI 846
F Y F L P + G+ V +S E ++A G I
Sbjct: 779 VFHYKFA---------------FLNDNGYPRNFLHSGFSVGERVFISDEHGHWSLAKGHI 823
Query: 847 TEISRFHVSVSFSKPLRLP---------GRNS---SSDADSLL------HEVWRIDKDEI 888
I + V L +P +N + DS L H +RIDKDE
Sbjct: 824 VHIQDSCIEVRTRHRLHIPWLKMPNFDFKKNQVFFGNYEDSKLSFIGSNHTRYRIDKDEF 883
Query: 889 MTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKSLNDD 948
+ + +R L+ L A +R MI+ L+ P+F + ++ DP K LN+D
Sbjct: 884 SSGIASIRGTLMSSVLPDA-PLIIRDMIIRLKPPKFCNSALI--DPEFL-----KCLNED 935
Query: 949 QRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKL 1008
Q A+ K A+ Y+LILGMPGTGKT+T+ +++LL + ILLTS+T+ AVDN+LIKL
Sbjct: 936 QITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILIKL 995
Query: 1009 KSQSIDFVRIGRHEVVHKEIQKHCLS-AMNINSVEEIKKRLDQVKVVAVTCLGITNPLLT 1067
K VR+G +H +++ CL+ + + +K + ++VA + LG+ + +
Sbjct: 996 KGCDSTIVRLGSPHKIHPLVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFN 1055
Query: 1068 DKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRR 1127
+KFD CI+DEA Q LP+ LGPL A KFVLVGDHYQLPPLV+++ ++G+ +SLF+
Sbjct: 1056 KRKFDYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKL 1115
Query: 1128 LSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKI---------KVSD 1178
LSE+HP+A++ L+ QYRM + I LS+ LIYG L CGS I+ K+ + D
Sbjct: 1116 LSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPD 1175
Query: 1179 LSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEG 1238
SS W+ + +NP VIF NTD + E+K + L N EA LI + ++ ++
Sbjct: 1176 SSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQ 1235
Query: 1239 KDIGIITPYNSQANLIRHSL-SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSL 1297
IGII+ Y SQ L+ +L S + +EI+T+D+YQGRDKD IL+SFVRS N +N L
Sbjct: 1236 SSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIILISFVRS--NSKNLVGEL 1293
Query: 1298 LGDWHRINVALTRAKKKLIMVGSCRTLSKVP----LLKLL 1333
L DWHR+NVAL+RAK K IM GS TLS LLKLL
Sbjct: 1294 LRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLL 1333
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 328/1047 (31%), Positives = 491/1047 (46%), Gaps = 156/1047 (14%)
Query: 370 FLVLEVSEKNRPADPVDAKSPYKVLRLLNEQSGEERAVH-LWEDWFHTVIAPGDTVNVIG 428
+ VL V E V A+ K L + Q G++ + L +DW I PGD +++ G
Sbjct: 54 YCVLNVKE-------VYAQGEEKHLTITASQEGDDLELCILKDDWVALHIKPGDIIHLEG 106
Query: 429 EFDDQGKCDVGRENNFLIVHPDVLVSGTRVAASFSCPRRSVLDERLK-CSERSISALLGT 487
+ R+ +LI++PD+L+SGT +A C RRSVL E+ K C + S L+GT
Sbjct: 107 NCAFDNTWTISRDTGYLILYPDLLISGTSIANGIRCLRRSVLSEKFKVCDKGSRQMLIGT 166
Query: 488 LLHQIFQAGLMKEIPTMKFLEEYARLVLQ--KNIESLYACGVNENDIHKTLVEAIPKMLN 545
+LH IFQ + T L+E A + K ++ +Y +N+ D+ + E +P
Sbjct: 167 MLHDIFQRATTRGF-TDSVLQELAHHTVHGPKYLKEMYQLKLNQTDVMGEVQEYLPSFAK 225
Query: 546 WIILFKDSQDLNTPTVDF----GSDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVK 601
W I F + LN ++ D + K+SE DIEE W+P++GLKG ID + RVK
Sbjct: 226 WAIDFM-THPLNQHQINVTRPTAGDPTEATKVSEFLDIEENIWSPRFGLKGKIDVTARVK 284
Query: 602 IESKRNEINGMILPLEFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQS 661
I K ++ + I+PLE KTGK N S+EHR+QV+LYTLL ER + ++GLL YL++
Sbjct: 285 IHQK-SKSHLKIMPLELKTGKESN---SIEHRSQVVLYTLLSQERR-EDPEAGLLLYLKT 339
Query: 662 DQTQGVMVQRSDLVGLIMRRNE---FANDIIKAS-------TTQQLPPMLRAYGGNKECS 711
V R D L+ RNE + +++ S T LP ++ K CS
Sbjct: 340 GNMYSVPGNRLDRRELLKIRNELSYYLTNVVHKSDNGSKEITLASLPALIADRQACKFCS 399
Query: 712 GLGN-----------------------MFDSHIYHLTTAHCSFLRHWDRLIDLE--AKEM 746
+ N + HL H + R W + LE +K+
Sbjct: 400 QMRNCALYSRSVEQQIENCYIPAEMIPVVQKETEHLNKDHLQYFRLWYLMCTLEGNSKDS 459
Query: 747 QVVKNEIWCSRGSGGNHFTGCLSSIVLDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASD 806
++ + IW S C+ +++ + + D + ++ F R+ P N
Sbjct: 460 KMGRKNIWMMSSSEREEDGQCIGNLIRTGPVQ---TISDGQHLHSFQRKSGTVPATN--- 513
Query: 807 GDSLIGAAIPTKDMDCTLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKPL-RLP 865
L SGD V++S E LA++SG I E+ +++ + L +LP
Sbjct: 514 -----------------LMSGDRVVVSGEDKFLALSSGYIKEVKHNNITCILDRSLGKLP 556
Query: 866 GRNSSSDADSLLHEVWRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFD 925
+ LL +R+D +E NL +L S S +LR++I+D P F
Sbjct: 557 --------EDLL---FRLDHEEGGGGLESHLGNLSRLMENSPVSDKLRKLIIDFSKPNFV 605
Query: 926 S--GSVFSQDPALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKA 983
SV D K LN Q++A+ +VL +KDY LI+GMPGTGKT+T+ V
Sbjct: 606 QHLSSVLPSDAKDIVANILKGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVST 665
Query: 984 LLMRGASILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHCLSAMNINSVEE 1043
L ++ + L A G H +H +N+ +
Sbjct: 666 LHLKTCTSCLVDDHREAA-----------------GTHRS-----HRHSKGTVNLGKQKR 703
Query: 1044 IKKRLDQVKVVAVTCLGITNPLLT--DKKFD-------VCIMDEAGQT------------ 1082
+ + C T P ++ +KK VCIM +T
Sbjct: 704 QHRVTSTTSSTSAKCRSKTEPAVSAENKKLQKLISGSHVCIMVNGHKTFSQNNYIIFFDN 763
Query: 1083 TLPVSLGPLMFASKFVLVGDHYQLPPLVQSTE-ARENGMEISLFRRLSEEHPQAISALQS 1141
L + PL + F L+ H V+S RE GM SLF+RL E + +A+ L
Sbjct: 764 ILLLKKLPLHYMCAFALI-HHQCFKGCVKSVSLVRELGMSESLFKRL-ERNQEAVVQLTV 821
Query: 1142 QYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSC-----------SPWLKEAL 1190
QYRM IM LSN L+Y RL C SD ++NA +K+ + + S W+K+ L
Sbjct: 822 QYRMNSQIMALSNKLVYEGRLECASDRVSNAVVKLPHIKTLLLELEFRESQESMWIKDVL 881
Query: 1191 NPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQ 1250
P PV F+NT+ +PA E ++ ++N +EA L+ +T+ +K DIGII PY Q
Sbjct: 882 EPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQ 941
Query: 1251 ANLIR---HSLSVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVA 1307
+I +SLS S+VE++T+DKYQGRDK I+VSFVRS+ + + LL DW R+NVA
Sbjct: 942 LKVISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGK--LGDLLKDWRRLNVA 999
Query: 1308 LTRAKKKLIMVGSCRTLSKVPLLKLLI 1334
LTRAK KLIM+G TLS+ L+ LI
Sbjct: 1000 LTRAKHKLIMLGCVPTLSRFLCLEQLI 1026
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 167/586 (28%), Positives = 280/586 (47%), Gaps = 94/586 (16%)
Query: 812 GAAIPTKDMDCTLRSGDYVILSTESDRLA-VASGLITEISRFHVSVSFSKP----LRLPG 866
AA+P+ + SGD V L ++ + +A+G++T +++ V+V+F + L L
Sbjct: 75 AAALPSN----SFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDR 130
Query: 867 RNSSSDADSLLHEVWRIDKDEIMTSFSVMRYNLVQLF-LQSAQSSQLRRMIVDLEAPRFD 925
NS +R+ K ++ ++ L+ L S +S L ++ AP
Sbjct: 131 ENS-----------YRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAP--- 176
Query: 926 SGSVFSQDPALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALL 985
S S+ L++ + L+ Q+ A++ L+ K+ A+I G PGTGKT+T+V + +
Sbjct: 177 --SPASEIHPLTFFNT--CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV 232
Query: 986 MRGASILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHCLSAMNINS----- 1040
+G +L + +N AVDNL+ +L +R+G + + IQ+H L A+ S
Sbjct: 233 KQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQI 292
Query: 1041 VEEIKKRLDQV------------------------------------------KVVAVTC 1058
V +I+K +DQV VV T
Sbjct: 293 VADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATN 352
Query: 1059 LGITN----PLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTE 1114
G + LL + FDV ++DE Q PL+ A K +L GDH QLPP S +
Sbjct: 353 TGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHK 412
Query: 1115 ARENGMEISLFRRLSEEH-PQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAK 1173
A G+ +SL RL+EE+ + + L QYRM Q IM ++ +Y +L+ S + A+
Sbjct: 413 AALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHS---SVAR 469
Query: 1174 IKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAY--EAKDHQTLNNPVEACLIAKITQEL 1231
+ DL P + P++ V+T + E +D Q+ NP E L++ Q L
Sbjct: 470 HLLRDL----PGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQAL 525
Query: 1232 VKNEIEGKDIGIITPYNSQANLIRHSL--SVSSVEIHTIDKYQGRDKDCILVSFVRSSEN 1289
V + +DI +++PYN Q +L+R SL +EI ++D +QGR+K+ +++SFVRS+
Sbjct: 526 VDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSN-- 583
Query: 1290 PRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLIN 1335
R L + RINVA+TRA++ + ++ RT++ LK L+
Sbjct: 584 -RKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVE 628
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/582 (28%), Positives = 272/582 (46%), Gaps = 89/582 (15%)
Query: 823 TLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKP----LRLPGRNSSSDADSLLH 878
+ SGD V L ++ +A+G++T I++ V+V+F + L L N+
Sbjct: 82 SFTSGDIVGLYDANESSQLATGVLTRITQKSVTVAFDESHDFQLNLDRENT--------- 132
Query: 879 EVWRIDKDEIMTSFSVMRYNLVQLF-LQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALS 937
+R+ K ++ ++ L+ L S +S L +++ +P S ++ P +
Sbjct: 133 --YRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDVLLGGSSP-----SPTTEIPPFT 185
Query: 938 YIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYT 997
+ + +L+ Q+ A+ L K+ A+I G PGTGKT+T+V + + +G IL + +
Sbjct: 186 FYNT--ALDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPS 243
Query: 998 NSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHCLSAM-----NINSVEEIKKRLDQV- 1051
N AVDNL+ +L +R+G + + Q+H L A+ N V +I+K +DQV
Sbjct: 244 NVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDIDQVF 303
Query: 1052 -----------------------------------------KVVAVTCLGITN----PLL 1066
VV T G ++ LL
Sbjct: 304 GKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLL 363
Query: 1067 TDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFR 1126
+ FDV ++DE Q PL+ A K +L GDH QLPP S +A G+ SL
Sbjct: 364 PENHFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLME 423
Query: 1127 RLSEEH-PQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPW 1185
RL E+H A+ L QYRM Q I ++ +Y +L+ +A +K DL P
Sbjct: 424 RLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLT-AHPSVAGHLLK--DL----PG 476
Query: 1186 LKEALNPCRPVIFVNTD--MLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGI 1243
+ + P++ ++T L + +D Q+ NP E L+ Q LV + DI +
Sbjct: 477 VADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAV 536
Query: 1244 ITPYNSQANLIRHSLSVS--SVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDW 1301
I PYN Q +L+R SLS +EI ++D +QGR+K+ ++++FVRS+ R L +
Sbjct: 537 IAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSN---RKGEVGFLAED 593
Query: 1302 HRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGI 1343
RINVA+TRA++ + ++ RT++ LK L++ E +
Sbjct: 594 RRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEV 635
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1
Length = 988
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 161/581 (27%), Positives = 271/581 (46%), Gaps = 87/581 (14%)
Query: 823 TLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKP----LRLPGRNSSSDADSLLH 878
+ SGD V L ++ +A+G++T I++ V V+F + L L N+ +
Sbjct: 82 SFTSGDIVGLYDTNESSQLATGVLTRITQKSVIVAFDESHDFQLNLDRENT--------Y 133
Query: 879 EVWRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSY 938
+ ++ D +T + + L S +S L +++ P S ++ P L++
Sbjct: 134 RLLKLAND--VTYKRLKKALLTLKKYHSGPASSLIDVLLGGSTP-----SPATEIPPLTF 186
Query: 939 IWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTN 998
+ +L+ Q+ A+ L K+ A+I G PGTGKT+T+V + + +G +L + +N
Sbjct: 187 YNT--TLDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 244
Query: 999 SAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHCLSAM-----NINSVEEIKKRLDQV-- 1051
AVDNL+ +L +R+G + + +Q+H L A+ N V +I++ +DQV
Sbjct: 245 IAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRDIDQVFG 304
Query: 1052 ----------------------------------------KVVAVTCLGITN----PLLT 1067
VV T G + LL
Sbjct: 305 KNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLP 364
Query: 1068 DKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRR 1127
+ FDV ++DE Q PL+ A K +L GDH QLPP S +A G+ SL R
Sbjct: 365 EDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMER 424
Query: 1128 LSEEHPQA-ISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWL 1186
L+E+H A + L QYRM Q I ++ +Y +L+ +A +K DL P +
Sbjct: 425 LAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLT-AHPSVAGHLLK--DL----PGV 477
Query: 1187 KEALNPCRPVIFVNTD--MLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGII 1244
+ P++ ++T L E +D Q+ NP E L+ Q LV ++ DI +I
Sbjct: 478 ADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVI 537
Query: 1245 TPYNSQANLIRHSLSVS--SVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWH 1302
PYN Q +L+R SLS +EI ++D +QGR+K+ ++++FVRS+ R L +
Sbjct: 538 APYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSN---RKGEVGFLAEDR 594
Query: 1303 RINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGI 1343
RINVA+TRA++ + ++ T++ LK L++ E +
Sbjct: 595 RINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEV 635
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/582 (27%), Positives = 270/582 (46%), Gaps = 89/582 (15%)
Query: 823 TLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKP----LRLPGRNSSSDADSLLH 878
+ SGD V L ++ +A+G++T I++ V+V+F + L L N+
Sbjct: 82 SFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQLNLDRENT--------- 132
Query: 879 EVWRIDKDEIMTSFSVMRYNLVQLF-LQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALS 937
+R+ K ++ ++ L+ L S +S L +++ P S + P LS
Sbjct: 133 --YRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDILLGSSTP-----SPAMEIPPLS 185
Query: 938 YIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYT 997
+ + +L+ Q+ A+ L K+ A+I G PGTGKT+T+V + + +G +L + +
Sbjct: 186 FYNT--TLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 243
Query: 998 NSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHCLSAM-----NINSVEEIKKRLDQV- 1051
N AVDNL+ +L +R+G + + +Q H L A+ N V +I++ +DQV
Sbjct: 244 NIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVF 303
Query: 1052 -----------------------------------------KVVAVTCLGITN----PLL 1066
VV T G ++ LL
Sbjct: 304 GKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLL 363
Query: 1067 TDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFR 1126
+ FDV ++DE Q PL+ A K +L GDH QLPP S A G+ SL
Sbjct: 364 PEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLME 423
Query: 1127 RLSEEHPQA-ISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPW 1185
RL+E+H + L QYRM Q IM ++ +Y + + +A +K DL P
Sbjct: 424 RLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFT-SHPSVAGHLLK--DL----PG 476
Query: 1186 LKEALNPCRPVIFVNTD--MLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGI 1243
+ + P++ ++T L E +D Q+ NP E L+ Q LV ++ DI +
Sbjct: 477 VTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAV 536
Query: 1244 ITPYNSQANLIRHSLSVS--SVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDW 1301
I PYN Q +L+R SLS +EI ++D +QGR+K+ +L++FVRS+ R L +
Sbjct: 537 IAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSN---RKGEVGFLAED 593
Query: 1302 HRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGI 1343
RINVA+TRA++ + ++ T++ L+ L++ E +
Sbjct: 594 RRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEV 635
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 139/441 (31%), Positives = 205/441 (46%), Gaps = 61/441 (13%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRG-ASILLTSYTNSAVDN 1003
LN Q A+ VL + +LI G PGTGKT T V L +G +L+ + +N AVD
Sbjct: 482 LNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ 540
Query: 1004 LLIKLKSQSIDFVRI--GRHEVVHKEIQKHCL--SAMNINSVEEIKKRLDQVK------- 1052
L K+ + VR+ E + + L N++S+ E++K L Q+K
Sbjct: 541 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK-LQQLKDETGELS 599
Query: 1053 -----------------------VVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLG 1089
V+ TC+G +P L +F ++DE+ Q T P +
Sbjct: 600 SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV 659
Query: 1090 PLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQG 1148
P++ +K +LVGDH QL P+V +A + G+ SLF RL + I LQ QYRM
Sbjct: 660 PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIR-LQVQYRMHPA 718
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYE 1208
+ + + Y L G K K D W + P +P+ F T
Sbjct: 719 LSAFPSNIFYEGSLQNGVTAADRVK-KGFDFQ----WPQ----PDKPMFFYVTQGQEEIA 769
Query: 1209 AKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVSS------ 1262
+ LN EA + KIT +L+K + IGIITPY Q + + + S
Sbjct: 770 SSGTSYLNR-TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKL 828
Query: 1263 ---VEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVG 1319
VEI ++D +QGR+KD I++S VR++E+ L D R+NVALTRA+ +I+VG
Sbjct: 829 YQEVEIASVDAFQGREKDFIILSCVRANEHQ---GIGFLNDPRRLNVALTRARYGVIIVG 885
Query: 1320 SCRTLSKVPLLKLLINKVGEQ 1340
+ + LSK PL L+N EQ
Sbjct: 886 NPKALSKQPLWNHLLNYYKEQ 906
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 207/445 (46%), Gaps = 61/445 (13%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRG-ASILLTSYTNSAVDN 1003
LN Q A+ VL + +LI G PGTGKT T V L +G +L+ + +N AVD
Sbjct: 477 LNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ 535
Query: 1004 LLIKLKSQSIDFVRI--GRHEVVHKEIQKHCL--SAMNINSVEEIKKRLDQVK------- 1052
L K+ + VR+ E + + L N++S+ E++K L Q+K
Sbjct: 536 LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK-LQQLKDETGELS 594
Query: 1053 -----------------------VVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLG 1089
V+ TC+G +P L +F ++DE+ Q T P +
Sbjct: 595 SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV 654
Query: 1090 PLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQG 1148
P++ +K +LVGDH QL P+V +A + G+ SLF RL + I LQ QYRM
Sbjct: 655 PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIR-LQVQYRMHPA 713
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYE 1208
+ + + Y L G K K D W + P +P+ F T
Sbjct: 714 LSAFPSNIFYEGSLQNGVTAADRVK-KGFDFQ----WPQ----PDKPMFFYVTQGQEEIA 764
Query: 1209 AKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVSS------ 1262
+ LN EA + KIT +L+K + IGIITPY Q + + + S
Sbjct: 765 SSGTSYLNR-TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKL 823
Query: 1263 ---VEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVG 1319
VEI ++D +QGR+KD I++S VR++E+ L D R+NVALTRA+ +I+VG
Sbjct: 824 YQEVEIASVDAFQGREKDFIILSCVRANEHQ---GIGFLNDPRRLNVALTRARYGVIIVG 880
Query: 1320 SCRTLSKVPLLKLLINKVGEQSGIL 1344
+ + LSK PL L++ EQ ++
Sbjct: 881 NPKALSKQPLWNHLLSYYKEQKALV 905
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1
Length = 660
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 205/441 (46%), Gaps = 76/441 (17%)
Query: 943 KSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVD 1002
K LN Q++A+ + K+ +LI G PGTGKT T+V ++ L++R IL+ +N AVD
Sbjct: 208 KELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVD 267
Query: 1003 NLLIKLKSQSIDFVRIGRHEVVHKEIQKH------------------------CLSAM-- 1036
N++ +L S I VR+G + I H CLS +
Sbjct: 268 NIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITK 327
Query: 1037 --NINSVEEIKKRLDQV-------------------KVVAVTCLGITNPLLTDKKFDVCI 1075
N EI K + ++ KVV T G + L ++FD I
Sbjct: 328 TKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVI 387
Query: 1076 MDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQA 1135
+DEA Q P PL+ +K +L GDH QL P VQS IS+F RL +
Sbjct: 388 IDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDL 442
Query: 1136 ISA-LQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCR 1194
+ L QYRM + I + + Y +L ++E+ K + DL + ++E
Sbjct: 443 VKCFLNIQYRMHELISKFPSDTFYDSKL-VPAEEV--KKRLLMDLEN----VEETELTDS 495
Query: 1195 PVIFVNTDMLPAYEAKD---------HQTLNNPVEACLIAKITQELVKNEIEGKDIGIIT 1245
P+ F +T L Y+ D + +N EA +++ L++ +E KDI ++T
Sbjct: 496 PIYFYDT--LGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVT 553
Query: 1246 PYNSQANLIRHSLSVSSVEIH--TIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHR 1303
PYN+Q LIR L +E+ ++DK QGR+K+ I+ S VRS++ L + R
Sbjct: 554 PYNAQVALIRQLLKEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVRE---VGFLAEKRR 610
Query: 1304 INVALTRAKKKLIMVGSCRTL 1324
+NVA+TR K+ L ++G T+
Sbjct: 611 LNVAITRPKRHLCVIGDSNTV 631
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 207/438 (47%), Gaps = 66/438 (15%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALL-MRGASILLTSYTNSAVDN 1003
LN Q A+ L + +LI G PGTGKT T V L+ + G ++L+ + +N+AVD
Sbjct: 452 LNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQ 510
Query: 1004 LLIKLKSQSIDFVRI---------------GRHEVVH--------KEIQKHCLSAMNINS 1040
L K+ ++ VR+ H + K++Q+ ++S
Sbjct: 511 LTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSS 570
Query: 1041 VEEIKKR----------LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGP 1090
+E + R L+ V+ TC+G + L+ KF ++DE+ Q+T P + P
Sbjct: 571 ADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVP 630
Query: 1091 LMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGI 1149
++ +K +LVGDH QL P+V +A G+ SLF RL + L+ QYRM +
Sbjct: 631 VVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFR-LEVQYRMHPEL 689
Query: 1150 MELSNALIYGDRLS---CGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPA 1206
+ + Y L C D ++K+ PW + P RP+ F+ T
Sbjct: 690 SQFPSNFFYEGSLQNGVCAEDR----RLKLD-----FPWPQ----PERPMFFLVTQGQEE 736
Query: 1207 YEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQ-ANLIR--------HS 1257
LN EA + KIT +K I+ + IGIITPY Q A L++ HS
Sbjct: 737 IAGSGTSFLNR-TEAANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHS 795
Query: 1258 LSVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIM 1317
+EI ++D +QGR+KD I++S VRS+E L D R+NVALTRAK +I+
Sbjct: 796 RLYQEIEIASVDAFQGREKDIIIMSCVRSNERQ---GIGFLNDPRRLNVALTRAKFGIII 852
Query: 1318 VGSCRTLSKVPLLKLLIN 1335
VG+ + L+K L L+N
Sbjct: 853 VGNPKVLAKQQLWNHLLN 870
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 187/401 (46%), Gaps = 68/401 (16%)
Query: 987 RGASILLTSYTNSAVDNLLIKLKSQSID-FVRIGRHEVVHKEIQKHCLSAMNINSVEEIK 1045
R +L++S TN AVD +L+ L S + F+R+G + K I + L A + N E++K
Sbjct: 509 RPWKLLISSSTNVAVDRVLLGLLSLGFENFIRVGSVRKIAKPILPYSLHAGSENESEQLK 568
Query: 1046 KR-------------------------------LDQVKVVAVTCLGITNPLLTDKKFDVC 1074
+ L QV+VV VTC P + D KF V
Sbjct: 569 ELHALMKEDLTPTERVYVRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVV 628
Query: 1075 IMDEAGQTTLPVSLGPL--MFASKFVLVGDHYQLPPLVQSTE-ARENGMEISLFRRLSEE 1131
++DE Q T P SL P+ K +LVGD QLPP +Q ++ A ENG+E +LF RL
Sbjct: 629 VLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLM 688
Query: 1132 HPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALN 1191
+ I L++QYR I ++N L Y L G EI SP L+
Sbjct: 689 GHKPI-LLRTQYRCHPAISAIANDLFYKGALMNGVTEIER-----------SPLLEWLPT 736
Query: 1192 PCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQA 1251
C F N L E + + +N EA K+ Q L+ + I G IG+IT Y SQ
Sbjct: 737 LC----FYNVKGLEQIERDN--SFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQM 790
Query: 1252 NLIRHSLS--------VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHR 1303
+ H LS + +V++ T+D +QG +K+ I++S VR+ + + R
Sbjct: 791 YKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ------VGFIDSEKR 844
Query: 1304 INVALTRAKKKLIMVGSCRTLSKVPLLKLLINKV-GEQSGI 1343
+NVALTR K+ L++VG+ L K L +I G + G+
Sbjct: 845 MNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGREDGL 885
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 204/443 (46%), Gaps = 72/443 (16%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKT---STMVHAVKALLMRGASILLTSYTNSAV 1001
LN+ Q A+ KVLTA +LI G PGTGKT S ++H + + +L+ + +N A+
Sbjct: 537 LNESQISAVNKVLTAP-LSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAI 595
Query: 1002 DNLLIKLKSQSIDFVRIG-----------RHEVVHKEIQKHCLSAMNINSVEEIKKR--- 1047
D L KL + VR+ H +HK++ K L M + +++K
Sbjct: 596 DQLTGKLHEIGLKVVRLSSKLREEVASPVEHLTLHKQVYK--LDQMGDGELGKLRKLKEA 653
Query: 1048 -----------------------LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTL 1084
L + V+ TC+G +P L+ +F ++DE+ Q +
Sbjct: 654 FGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDPRLSQFRFPHILIDESTQASE 713
Query: 1085 PVSLGPLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSE--EHPQAISALQS 1141
P L PLM +K +LVGDH QL P++ + + G+ SLF RL HP+ ++
Sbjct: 714 PECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISLGHHPERLTI--- 770
Query: 1142 QYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNT 1201
QYRM + E + Y +L ++ D S PW + P P+ F N
Sbjct: 771 QYRMHPSLTEFPSNTSYEGQL------VSELSHTDRDSQSKFPWPQ----PKDPMFFFNC 820
Query: 1202 DMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVS 1261
+ +N EA + KI + ++ IGIITPY Q I + S
Sbjct: 821 TGSEEISSSGTSFINT-TEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKS 879
Query: 1262 ---------SVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAK 1312
S+E+ ++D +QGR+KD I++S VRS++ L D R+NVALTRA+
Sbjct: 880 GKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQ---GIGFLQDPRRLNVALTRAR 936
Query: 1313 KKLIMVGSCRTLSKVPLLKLLIN 1335
LI++G+ + LSK PL LI+
Sbjct: 937 FGLIILGNAKVLSKDPLWNSLIS 959
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 205/434 (47%), Gaps = 59/434 (13%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALL-MRGASILLTSYTNSAVDN 1003
LN Q AI +VL+ +LI G PGTGKT T + L M + +L+ + +N AVD
Sbjct: 456 LNASQIAAIKQVLS-NPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQ 514
Query: 1004 LLIKLKSQSIDFVRI---GRHEV--------VHKEIQKHC-----------------LSA 1035
L ++ + VR+ R +V +H++++ + LS+
Sbjct: 515 LCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLVKLKTETGELSS 574
Query: 1036 MNINSVEEIKKR-----LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGP 1090
+ +++ ++ L VV TC+G +P L+ KF ++DE+ Q+ P + P
Sbjct: 575 QDEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIP 634
Query: 1091 LMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGI 1149
L+ K VLVGDH QL P++ + +A + G+ SLF RL + I L+ QYRM +
Sbjct: 635 LVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQFTPIR-LKVQYRMHPCL 693
Query: 1150 MELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEA 1209
E + + Y L G + V PW P P++F + A
Sbjct: 694 SEFPSNMFYEGSLQNGVTAAERLRKDVD-----FPWPV----PETPMMFWSNLGNEEISA 744
Query: 1210 KDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL---------SV 1260
LN EA + KI K ++ DIG+ITPY Q + I +++ S
Sbjct: 745 SGTSYLNR-TEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESY 803
Query: 1261 SSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGS 1320
VE+ ++D +QGR+KD I++S VRS+EN L D R+NVALTRAK L+++G+
Sbjct: 804 REVEVASVDAFQGREKDFIVLSCVRSNENQ---GIGFLSDPRRLNVALTRAKYGLVIIGN 860
Query: 1321 CRTLSKVPLLKLLI 1334
+ L K L L+
Sbjct: 861 PKVLCKHELWHHLL 874
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 199/441 (45%), Gaps = 61/441 (13%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRG-ASILLTSYTNSAVDN 1003
LN Q A+ VL K +LI G PGTGKT T V + +G +L+ + +N AVD
Sbjct: 489 LNASQVNAVKSVLQ-KPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 547
Query: 1004 LLIKLKSQSIDFVRIG--------------------RHEVVHKEIQKHCLSAMN-----I 1038
L K+ + + VR+ RH ++ + H L + +
Sbjct: 548 LAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL 607
Query: 1039 NSVEEIK----KRLDQ------VKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSL 1088
+S +E K KR + V+ TC+G + L++ +F ++DE+ Q T P L
Sbjct: 608 SSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQATEPECL 667
Query: 1089 GPLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQ 1147
PL+ K VLVGDH QL P++ +A G+ SLF RL + I LQ QYRM
Sbjct: 668 IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIR-LQVQYRMHP 726
Query: 1148 GIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAY 1207
+ E + Y L G I + PW P RP+ F
Sbjct: 727 ALSEFPSNSFYEGTLQNGVTIIERQTTGID-----FPWPV----PNRPMFFYVQLGQEEI 777
Query: 1208 EAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLS-------- 1259
A LN EA + K+ +K+ + IG+ITPY Q I + ++
Sbjct: 778 SASGTSYLNR-TEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQ 836
Query: 1260 -VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMV 1318
+E+ ++D +QGR+KD I++S VRS+E+ L D R+NVALTRA+ ++++
Sbjct: 837 LYKEIEVASVDSFQGREKDYIILSCVRSNEHQ---GIGFLNDPRRLNVALTRARYGIVIL 893
Query: 1319 GSCRTLSKVPLLKLLINKVGE 1339
G+ + LSK PL L+ E
Sbjct: 894 GNPKVLSKQPLWNGLLTHYKE 914
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 159/571 (27%), Positives = 248/571 (43%), Gaps = 69/571 (12%)
Query: 815 IPTKDMDCTLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKPLRLPGRNSSSDAD 874
+P D D L GD + L + D + G+ I V S+ + + R S
Sbjct: 329 LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIK---VPDSYGDEIAIELRTSVGAPV 385
Query: 875 SLLHEVWRIDKDEIMTSFSVMRYNLVQLFL-QSAQSSQLRRMIVDLEAPRFDSGSVFSQD 933
+ H +++D TSF M+ L + +++ S + ++ E + ++ Q
Sbjct: 386 EIPHN-YQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEV---EDVTIKCQL 441
Query: 934 PALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRG-ASIL 992
P LN Q A+ VL + +LI G PGTGKT T V L +G +L
Sbjct: 442 PKRFTANGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVL 500
Query: 993 LTSYTNSAVDNLLIKLKSQSIDFVRI--GRHEVVHKEIQKHCL--SAMNINSVEEIKKRL 1048
+ + +N AVD L K+ + VR+ E + + L N++S+ E++K L
Sbjct: 501 VCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLALHNQISNMDSMPELQK-L 559
Query: 1049 DQVK------------------------------VVAVTCLGITNPLLTDKKFDVCIMDE 1078
Q+K V+ TC+ +P L +F ++DE
Sbjct: 560 QQLKDETGELSSADEKRYRALKRTAERELLMNADVIWCTCVRAGDPRLAKMQFRSILIDE 619
Query: 1079 AGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISA 1138
+ Q T P +GP+ +K +++G+ V +A + G+ SLF RL + I
Sbjct: 620 STQATEPKCIGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVLGIRPIR- 678
Query: 1139 LQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVS-DLSSCSPWLKEALNPCRPVI 1197
LQ QYRM + + + Y L G A +IK D W + P +P+
Sbjct: 679 LQVQYRMHPALSAFPSNIFYEGSLQNGV--TAGDRIKKGFDFQ----WPQ----PEKPMF 728
Query: 1198 FVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHS 1257
F T + LN EA + KIT L+K + IGIITPY Q + +
Sbjct: 729 FYVTQGQEEIASSGTSYLNR-TEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQY 787
Query: 1258 LSVSS--------VEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALT 1309
+ S VEI ++D +QGR+KD I++S VR++E+ L D R+NVALT
Sbjct: 788 MQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQ---GIGFLNDPRRLNVALT 844
Query: 1310 RAKKKLIMVGSCRTLSKVPLLKLLINKVGEQ 1340
RAK +I+VG+ + LSK PL L+N EQ
Sbjct: 845 RAKYGVIIVGNPKALSKQPLWNNLLNNYKEQ 875
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 161/301 (53%), Gaps = 31/301 (10%)
Query: 1038 INSVEEIKKR-----LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLM 1092
IN+++EI ++ L + V+ T + +L +FDV ++DE Q P L P++
Sbjct: 357 INNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIV 416
Query: 1093 FASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMEL 1152
K ++ GDH QLPP V S ++ +LF RL +++P+ S L+ QYRM + IME
Sbjct: 417 KGRKLIMAGDHKQLPPTVLSENEE---LKKTLFERLIKKYPEFSSILEIQYRMNEKIMEF 473
Query: 1153 SNALIYGDRLSCGSDEIANAKIKVSDL---SSCSPWLKEALNPCRPVIFVNTDMLPAYEA 1209
N + Y ++L + + N I + DL ++ +N PV F+N + E
Sbjct: 474 PNKMFYNNKLKA-DESVKN--ITLLDLVKEEEIDEVDRDIINEI-PVQFINVE---GIER 526
Query: 1210 KDHQ--TLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVSS--VEI 1265
KD + + N EA + +I ++LVK +I +ITPY++Q +R + +E+
Sbjct: 527 KDKESPSYYNIEEAEKVLEIVKKLVKYKIPT---NVITPYDAQVRYLRRLFEEHNIDIEV 583
Query: 1266 HTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLS 1325
+T+D +QGR+ + I++SFVR+ L D R+NVA+TRAK+KLI++G+ L
Sbjct: 584 NTVDGFQGRENEAIVISFVRTK------NFGFLKDLRRLNVAITRAKRKLILIGNENLLK 637
Query: 1326 K 1326
+
Sbjct: 638 Q 638
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 891 SFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKSLNDDQR 950
+F M+ L + + + +L +I+ +E P +D L + +K+LN+ Q+
Sbjct: 140 TFKRMKEALREF---ARKRDKLAYIILGIEHPE----KPLREDIKLEF--YDKNLNESQK 190
Query: 951 RAIIKVLTAKDYALILGMPGTGKTSTMVHA-VKALLMRGASILLTSYTNSAVDNLLIKL- 1008
A+ K + ++D LI G PGTGKT T+ V+ + +L T+ +N A DN+L L
Sbjct: 191 LAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLI 250
Query: 1009 -KSQSIDFVRIGRHEVVHKEIQKHCL 1033
K + VR+G + K++ +H L
Sbjct: 251 KKYPDLKVVRVGHPTRISKDLIQHSL 276
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 205/439 (46%), Gaps = 71/439 (16%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKAL-LMRGASILLTSYTNSAVDN 1003
LN Q A+ VL + +LI G PGTGKT T V L + IL+ + +N AVD+
Sbjct: 409 LNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDH 467
Query: 1004 LLIKLKSQSIDFVRI---GRHEV--------VHKEIQKHC----------------LSAM 1036
L KL+ + VR+ R +V +H + + LSA
Sbjct: 468 LAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSAS 527
Query: 1037 NINSVEEIKKR-----LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPL 1091
+ ++ ++ L++ VV TC+G + L D KF ++DE+ Q + P L P+
Sbjct: 528 DTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRL-DTKFRTVLIDESTQASEPECLIPI 586
Query: 1092 MFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIM 1150
+ +K +LVGDH QL P++ +A + G++ SLF RL I L+ QYRM +
Sbjct: 587 VKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIR-LEVQYRMNPYLS 645
Query: 1151 ELSNALIYGDRLSCG----SDEIANAKIKVSDLSSCSPWLKEALNPCR--PVIFVNTDML 1204
E + + Y L G + N+K PW P R P++F
Sbjct: 646 EFPSNMFYEGSLQNGVTIEQRTVPNSKF---------PW------PIRGIPMMFWANYGR 690
Query: 1205 PAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVSS-- 1262
A LN +EA +I +L ++ ++ + IG+ITPY Q I + ++
Sbjct: 691 EEISANGTSFLNR-IEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSL 749
Query: 1263 -------VEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKL 1315
VE+ ++D +QGR+KD I++S VR++E L D R+NV LTRAK L
Sbjct: 750 DKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQ---AIGFLRDPRRLNVGLTRAKYGL 806
Query: 1316 IMVGSCRTLSKVPLLKLLI 1334
+++G+ R+L++ L L+
Sbjct: 807 VILGNPRSLARNTLWNHLL 825
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 196/434 (45%), Gaps = 58/434 (13%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRG-ASILLTSYTNSAVDN 1003
LN Q +A+ +VLT + +LI G PGTGKT V L+ + ++L+ S +N AVD+
Sbjct: 446 LNSSQMQAVKQVLT-RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDH 504
Query: 1004 LLIKLKSQSIDFVRIGRHEVVHKEIQ------KHCLSAMNINSVEEIKK----------- 1046
L K+ + VR+ H E +H L M ++++ +
Sbjct: 505 LAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKVMGGAELQKLIQLKDEAGELEFK 564
Query: 1047 ------RLDQVK---------VVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPL 1091
+L +VK V+ TC + L+ + ++DE+ Q T P L +
Sbjct: 565 DDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSKIRTRTVLIDESTQATEPEILVSI 624
Query: 1092 MFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIM 1150
M + VLVGDH QL P+V +A G+ SLF RL + LQ QYRM +
Sbjct: 625 MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFR-LQVQYRMHPVLS 683
Query: 1151 ELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAK 1210
E + + Y L G E V W K P +P F + A
Sbjct: 684 EFPSNVFYDGSLQNGVTENDRHMTGVD-----WHWPK----PNKPAFFWHCSGSEELSAS 734
Query: 1211 DHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSV---------S 1261
LN EA + K+ +L+K ++ IG+IT Y Q + I + +
Sbjct: 735 GTSFLNR-TEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYE 793
Query: 1262 SVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSC 1321
+VEI ++D +QGR+KD I+V+ VRS++ L D R+NVA+TRAK L++VG+
Sbjct: 794 NVEIASVDAFQGREKDYIIVTCVRSND---ILGIGFLSDPRRLNVAITRAKYGLVLVGNA 850
Query: 1322 RTLSKVPLLKLLIN 1335
+ L++ L LIN
Sbjct: 851 KVLARHDLWHELIN 864
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1
Length = 683
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 80/456 (17%)
Query: 944 SLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGAS--ILLTSYTNSAV 1001
+LND Q+ AI D +I G PGTGKT T++ ++ LL++ IL+ +N +V
Sbjct: 207 NLNDSQKTAI-NFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISV 265
Query: 1002 D------------NLLIKL----------KSQSIDFV------------RIGRHEVVHKE 1027
D NLL+++ K S+D + I + +K+
Sbjct: 266 DTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQENKK 325
Query: 1028 IQKHCLSAMNINSVEEIKKRLD------------QVKVVAVTCLGITNPLLTD------- 1068
++ + N N ++ ++K L Q ++V T G ++ L
Sbjct: 326 LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPN 385
Query: 1069 -KKFDVCIMDEAGQTTLPVSLGPLMFAS----KFVLVGDHYQLPPLVQSTEARE--NGME 1121
+ FD I+DE Q P PL+ K VL GD+ QLPP +++ + + + +E
Sbjct: 386 FQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLE 445
Query: 1122 ISLFRRLSEEHPQ--AISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDL 1179
+LF R+ + P+ + L QYRM Q IME + +Y +L + +AN + DL
Sbjct: 446 TTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADA-TVANRLL--IDL 502
Query: 1180 SSCSPWLKEALNPCR-PVIFVNTDMLPAYEAKDHQTL----NNPVEACLIAKITQELVKN 1234
+ E + + P+I+ +T E D T+ N E ++ + + L
Sbjct: 503 PTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSF 562
Query: 1235 EIEGKDIGIITPYNSQAN----LIRHSLSVSSVEIHTIDKYQGRDKDCILVSFVRSSENP 1290
+ IG+I+PYN+Q + LI L ++ +EI T+D +QGR+KD I++S VRS+E
Sbjct: 563 NVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNE-- 620
Query: 1291 RNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSK 1326
L + R+NVA+TR +++L++VG+ L +
Sbjct: 621 -KFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQR 655
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 202/435 (46%), Gaps = 71/435 (16%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTST---MVHAVKALLMRG----ASILLTSYT 997
LN Q A+ VL+ K +LI G PGTGKT T +V+ + + R + +L+ + +
Sbjct: 393 LNASQSEAVRAVLS-KPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPS 451
Query: 998 NSAVDNLLIKLKSQSIDFVRIG---RHEV--------VHKEIQKHCL-----------SA 1035
N AVD L K+ + VR+ R ++ +H++I+ + S
Sbjct: 452 NVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSE 511
Query: 1036 MNINSVEEIKKR-----------LDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTL 1084
N S+++ KK L V+ TC+G + ++ KF ++DEA Q +
Sbjct: 512 NNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASE 571
Query: 1085 PVSLGPLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQY 1143
P + PL+ +K VLVGDH QL P+V + + + SLF RL L QY
Sbjct: 572 PECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIILGNSPFR-LVVQY 630
Query: 1144 RMCQGIMELSNALIYGDRLSCG---SDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVN 1200
RM + E + Y L G S+ IA + D PW++ P P++F
Sbjct: 631 RMHPCLSEFPSNTFYEGTLQNGVTTSERIA----RHVDF----PWIQ----PDSPLMFYA 678
Query: 1201 TDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLS- 1259
A LN EA KI +++ + + IGI+TPY+ Q + I +
Sbjct: 679 NFGQEELSASGTSFLNR-TEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQN 737
Query: 1260 --------VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRA 1311
+VE+ ++D +QGR+KD I++S VRSSE+ + D R+NVALTRA
Sbjct: 738 NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQ---GIGFVNDPRRLNVALTRA 794
Query: 1312 KKKLIMVGSCRTLSK 1326
K +I++G+ + L+K
Sbjct: 795 KYGVIVLGNPKVLAK 809
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 203/432 (46%), Gaps = 72/432 (16%)
Query: 946 NDDQRRAIIKVLTAKDYA---LILGMPGTGKTSTMVHAVKALLMR--GASILLTSYTNSA 1000
N +Q+ A+ ++ L+ G PGTGKT T+V A+K + GA IL + +NSA
Sbjct: 526 NPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSA 585
Query: 1001 VDNLLIKL-KSQSID---FVRIGRHEVVHKEIQKHCLSAMNI---NSVEEIKKRLDQVKV 1053
D L KL SQ +D RI KEI K + N+ N + K+ L K+
Sbjct: 586 ADQLGEKLITSQHVDARNIYRIYASSRNPKEIPKVLENNSNVEGENIIFPCKEDLMPYKI 645
Query: 1054 VAVTCLGITNPLLTDKKFDV-----CIMDEAGQTTLP---VSLGPLMFA--SKFVLVGDH 1103
V C +T L F V +DEAG P +S+ L+ A + VL GD
Sbjct: 646 VV--CTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDP 703
Query: 1104 YQLPPLVQSTEARENGMEISLFRRLSEEHP-----------QAISALQSQYRMCQGIMEL 1152
QL P+++S A + G+ +SL RL ++ + ++ L YR I+++
Sbjct: 704 KQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKV 763
Query: 1153 SNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCR--PVIF---VNTDMLPA- 1206
N L Y + L +DEI++ + C+ W E L P R PVIF V D +
Sbjct: 764 PNELFYDNELKACADEISSRQY-------CT-W--EHL-PKRGFPVIFHGVVGKDEREST 812
Query: 1207 ----YEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL---- 1258
+ + + + ++ L+ + + + K I KDIGII PY Q IR ++
Sbjct: 813 SPSFFNTSEIDKIMDYLKKLLLTQAKKGIAK--ISPKDIGIIAPYRKQVEKIRQAIKIHR 870
Query: 1259 ---SVSSVE---IHTIDKYQGRDKDCILVSFVRSSEN----PRNCTSSLLGDWHRINVAL 1308
S+S +E + +++++QG+++ I+VS VRSS+ L + R NVA+
Sbjct: 871 ELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRFNVAV 930
Query: 1309 TRAKKKLIMVGS 1320
TRAK LIMVG+
Sbjct: 931 TRAKALLIMVGN 942
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 196/435 (45%), Gaps = 62/435 (14%)
Query: 945 LNDDQRRAIIKVLTAKDYAL---ILGMPGTGKTSTMVHAVKAL--LMRGASILLTSYTNS 999
LN++Q+ A+ ++L+ L + G PGTGKT T++ AV + + + IL+ + +NS
Sbjct: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNS 804
Query: 1000 AVDNLLIKLKS----QSIDFVRIGR----HEVVHKEIQKHCLSAMNINSVEEIKKRLDQV 1051
A D + ++L Q VR+ E+V ++ +C +I + +
Sbjct: 805 AADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDAVKPYCRDGEDI-------WKASRF 857
Query: 1052 KVVAVTCL--GITNPL-LTDKKFDVCIMDEAGQTTLPVSLGPLMFAS----KFVLVGDHY 1104
+++ TC G+ + + F +DEAGQ + P L PL S + VL GD
Sbjct: 858 RIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPM 917
Query: 1105 QLPPLVQSTEARENGMEISLFRRL----------------SEEHPQAISALQSQYRMCQG 1148
QL P+++S A G+ +S RL +P ++ L YR +
Sbjct: 918 QLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEA 977
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYE 1208
++ L + L Y L +D V+ L K+ P+IF A E
Sbjct: 978 LLMLPSRLFYHRELEVCADPTV-----VTSLLGWEKLPKKGF----PLIFHGVRGSEARE 1028
Query: 1209 AKDHQTLNNPVEACLIAKITQEL---VKNEIEGKDIGIITPYNSQANLIR---HSLSVSS 1262
K N P EA + + L + +++ DIG+ITPY Q IR ++ +
Sbjct: 1029 GKSPSWFN-PAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMD 1087
Query: 1263 VEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLG---DWHRINVALTRAKKKLIMVG 1319
+++ +++++QG++ I++S VRS+E+ LG + R NVA+TR K LI++G
Sbjct: 1088 IKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLG 1147
Query: 1320 SCRTLSKVPLLKLLI 1334
+ L + P L+
Sbjct: 1148 NPHVLVRDPCFGALL 1162
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 200/441 (45%), Gaps = 62/441 (14%)
Query: 940 WSEKSLNDDQRRAIIKVLTAKDYAL---ILGMPGTGKTSTMVHAVKALL--MRGASILLT 994
W +SLN Q+RA+ +L + + + G PG+GKT T++ + L+ + GA IL+
Sbjct: 779 WYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVG 838
Query: 995 SYTNSAVDNLLIKL-KSQSI---DFVRIGRHEVVHK-----EIQKHCLSAMNINSVEEIK 1045
+ +NS+ D + +L S+++ DF+R+ + V K EI +C ++ ++ +V +
Sbjct: 839 TPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATS-DVGAVGSCE 897
Query: 1046 KRLD----------QVKVVAV------TCLGITNPL---LTDKKFDVCIMDEAGQTTLPV 1086
++ Q K + TC + N L F + DEAGQ T P
Sbjct: 898 DKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPE 957
Query: 1087 SLGPLMFASK----FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEE----------- 1131
++ P++ +K VL GD QL +V S A + G IS RL E
Sbjct: 958 TMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFP 1017
Query: 1132 -----HPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWL 1186
+P ++ L YR IM + + L Y D L E + + ++ C +
Sbjct: 1018 ESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCV-FE 1076
Query: 1187 KEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITP 1246
E P F + + D + NP E + +T L + + IGIITP
Sbjct: 1077 SEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITP 1136
Query: 1247 YNSQANLIRHSLSVSSV---EIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSL-LGDWH 1302
Y Q ++R + V +I +++++QG+++D IL+S VRSSE + LG
Sbjct: 1137 YQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVR 1196
Query: 1303 ---RINVALTRAKKKLIMVGS 1320
R+NVA++RA+ +I+ G+
Sbjct: 1197 CSKRLNVAVSRARAMMIIFGN 1217
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/457 (27%), Positives = 200/457 (43%), Gaps = 73/457 (15%)
Query: 946 NDDQRRA---IIKVLTAKDYALILGMPGTGKTSTMVHAVKALL--MRGASILLTSYTNSA 1000
N +Q +A I++ T +I G PGTGKT T+V A+K ++ + A IL + +NS
Sbjct: 501 NPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG 560
Query: 1001 VD----NLLIKLKSQSIDFVRIGRH-EVVHKEIQKHC-LSAMNINSVEEIKKRLDQVKVV 1054
D L + L S + R +V ++I+ C A V KK L Q +V+
Sbjct: 561 ADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVL 620
Query: 1055 AVTCLGITNPLLTDKKFDV-----CIMDEAGQTTLP---VSLGPLM-------FASKFVL 1099
T IT L +F + +DEAG P V++ LM + VL
Sbjct: 621 ITTL--ITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVL 678
Query: 1100 VGDHYQLPPLVQSTEARENGMEISLFRRL-----------SEEHPQAISALQSQYRMCQG 1148
GD QL P+++S A ++G+ SL RL + PQ I+ L YR
Sbjct: 679 AGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPT 738
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEAL-NPCRPVIFVNTDMLPAY 1207
I+++ N L Y L +D V D W E L P+IF M
Sbjct: 739 ILDIPNQLYYDGELQACAD--------VVDRERFCRW--EGLPQQGFPIIFHGV-MGKDE 787
Query: 1208 EAKDHQTLNNPVEACLIAKITQELV-------KNEIEGKDIGIITPYNSQANLIRHSLS- 1259
+ + NP EA + ++L+ K + +++G+I+PY Q IR+ ++
Sbjct: 788 REGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITK 847
Query: 1260 ----------VSSVEIHTIDKYQGRDKDCILVSFVRSSEN----PRNCTSSLLGDWHRIN 1305
+ +++ +++++QG+++ IL+S VRSS++ + L + R N
Sbjct: 848 LDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFN 907
Query: 1306 VALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSG 1342
VA+TRAK LI+VG+ L P K + E G
Sbjct: 908 VAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGG 944
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 200/439 (45%), Gaps = 70/439 (15%)
Query: 945 LNDDQRRAIIKVLTAKDYAL---ILGMPGTGKTSTMVHAVKAL--LMRGASILLTSYTNS 999
LN++Q+ A+ ++L+ L + G PGTGKT T++ AV + + + IL+ + +NS
Sbjct: 747 LNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNS 806
Query: 1000 AVDNLLIKLKSQSID----FVRIGR----HEVVHKEIQKHCLSAMNINSVEEIKKRLDQV 1051
A D + ++L + VR+ E + I+ +C +I R +
Sbjct: 807 AADLVCLRLHESKVPKPAAMVRVNATCRFEETIIDAIKPYCRDGEDI-------WRASRF 859
Query: 1052 KVVAVTC--LGITNPL-LTDKKFDVCIMDEAGQTTLPVSLGPLMFAS----KFVLVGDHY 1104
+++ TC G+ + + F +DEAGQ + P L PL S + VL GD
Sbjct: 860 RIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPM 919
Query: 1105 QLPPLVQSTEARENGMEISLFRRLSEE----------------HPQAISALQSQYRMCQG 1148
QL P+++S A G+ +S+ RL +P ++ L YR
Sbjct: 920 QLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSA 979
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYE 1208
++ L + L Y L +D K+ S L W K P+IF A E
Sbjct: 980 LLALPSRLFYHRELEVCAD----PKVVTSLLG----WEKLPRKGF-PLIFHGVRGNEARE 1030
Query: 1209 AKDHQTLNNPVEA-------CLIAKITQELVKNEIEGKDIGIITPYNSQANLIR---HSL 1258
+ + P EA CL+A+ V +++ KDIG+ITPY Q I+ ++
Sbjct: 1031 GRSPSWFS-PAEAVQVMRYCCLLARS----VSSQVSSKDIGVITPYRKQVEKIKILLRNV 1085
Query: 1259 SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLG---DWHRINVALTRAKKKL 1315
++ +++ +++++QG++ I++S VRS+E+ LG + R NVA+TR K L
Sbjct: 1086 DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALL 1145
Query: 1316 IMVGSCRTLSKVPLLKLLI 1334
I++G+ L + P L+
Sbjct: 1146 IILGNPHVLVRDPCFGALL 1164
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 204/453 (45%), Gaps = 74/453 (16%)
Query: 940 WSEKSL--NDDQRRAIIKVLTAKDYA---LILGMPGTGKTSTMVHAVKALL--MRGASIL 992
W ++ + N++Q +A+ ++T LI G PGTGKT T+V A+K + + A IL
Sbjct: 484 WFDRKVEANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARIL 543
Query: 993 LTSYTNSAVDNLLIKLKSQSID--FVRIGRHEVVHKEIQKHCLSAMNINSVEEI----KK 1046
+ +NSA D L +L + RI +K++ N + E+ K
Sbjct: 544 ACAPSNSAADLLCQRLLTNIAPRYIYRIMASSANYKDVPADVRPCCNWDDSEKCYVYPSK 603
Query: 1047 RLDQVKVVAVTCLGITNPLLTDK----KFDVCIMDEAGQTTLP---VSLGPLMF------ 1093
+L + + +T L L++ F +DE G P V++ L+
Sbjct: 604 KLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDT 663
Query: 1094 ---ASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRL---------SEE--HPQAISAL 1139
+ VL GD QL P+ +S A ++G+ SL RL S+E +PQ ++ L
Sbjct: 664 NPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKL 723
Query: 1140 QSQYRMCQGIMELSNALIYGDRLSC--GSDEIANAKIKVSDLSSCSPWLKEALNPCRPVI 1197
YR + I+++ N L Y L GS+ D+ + +E N P+I
Sbjct: 724 LWNYRSHKAILKVPNELFYDSELKAYEGSE---------PDVRNFYCTWEELPNRGVPII 774
Query: 1198 FVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNE-------IEGKDIGIITPYNSQ 1250
F EAK N E ++ + Q+L++++ I K+IGII+PY Q
Sbjct: 775 FHGVCGEDEREAKSPSFFNT-AEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQ 833
Query: 1251 ANLIRHSLS-----------VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSL-- 1297
IR +++ + +++ +++++QG+++ IL+S VRS +
Sbjct: 834 VEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRL 893
Query: 1298 --LGDWHRINVALTRAKKKLIMVGSCRTLSKVP 1328
L + R+NVALTRAK LI+VG+ LSK P
Sbjct: 894 GFLKNPKRLNVALTRAKALLIVVGNAAVLSKDP 926
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 182/403 (45%), Gaps = 69/403 (17%)
Query: 977 MVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQSI----------DFVRIG--RHEVV 1024
+V+A + +R +L+ + +NSA+D ++++L S + VRIG H V
Sbjct: 366 VVNASRKYRLR---VLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSV 422
Query: 1025 HKEIQKHCLSAMNINSVEEIKKR-------------LDQVKVVAVTCLGITNPLL--TDK 1069
H ++ +++++ K+ L++ +V T + LL +++
Sbjct: 423 ASVSLDHLVAQKRGSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNR 482
Query: 1070 KFDVCIMDEAGQTTLPVSLGPLMFASKFV-LVGDHYQLPPLVQSTEARENGMEISLFRRL 1128
FDV I+DEA Q P +L PL K V LVGD QLP V ST A+++G S+F RL
Sbjct: 483 GFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERL 542
Query: 1129 SEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWL-- 1186
++ + L++QYRM I + Y L GSD A P+
Sbjct: 543 -QKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFF 601
Query: 1187 -----KEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGK-- 1239
KE+ +P VN D VE L+ I LV E K
Sbjct: 602 DIHEGKESQHPGATGSRVNLD---------------EVEFVLL--IYHRLVTMYPELKSS 644
Query: 1240 -DIGIITPYNSQANLIRHSL-------SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPR 1291
+ II+PYN Q + + V+I+T+D +QGR+KD + S VR++EN +
Sbjct: 645 SQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQ 704
Query: 1292 NCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLI 1334
L + R+NV +TRAK +++VGS TL PL K LI
Sbjct: 705 ---IGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDPLWKNLI 744
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 943 KSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALL 985
++LN Q+ AI L+ K + LI G PGTGKT T++ + A++
Sbjct: 256 ENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIM 298
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
Length = 1002
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 198/425 (46%), Gaps = 61/425 (14%)
Query: 944 SLNDDQRRAIIKVLTAKDYA--LILGMPGTGKTSTMVHAVKALL--MRGASILLTSYTNS 999
+LN +Q +I VL K +I G PGTGKT T+V A+ L R A +L+ + +NS
Sbjct: 396 ALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNS 455
Query: 1000 AVDNLLIKLKSQSIDFVRIGRHEV------------VHKEIQKHCLSAMNINSVEEIKKR 1047
A D++L KL ++ VRI +E+ + EI + C I +K
Sbjct: 456 AADHILEKL--LCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDELIFKCPPLKA- 512
Query: 1048 LDQVKVVAVTCLG---ITNPLLTDKKFDVCIMDEAGQTTLPVSLGPL----MFASKFVLV 1100
L + K+V T + + + F ++DEAGQ + P ++ + + + VL
Sbjct: 513 LTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLA 572
Query: 1101 GDHYQLPPLVQSTEARENGMEISLFRRL------SEEHPQAISALQSQYRMCQGIMELSN 1154
GD QL P++ S +A G+ S RL E ++ L YR I++L +
Sbjct: 573 GDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPS 632
Query: 1155 ALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQT 1214
L Y L +A+ + S L+S L N P++F + D +
Sbjct: 633 KLFYDGEL------VASKEDTDSVLAS----LNFLPNKEFPMVFY------GIQGCDERE 676
Query: 1215 LNNP-----VEACLIAKITQELVKNE-IEGKDIGIITPYNSQANLIRH---SLSVSSVEI 1265
NNP +E + + + L N+ ++ +DIG+ITPY Q I+ L ++ V++
Sbjct: 677 GNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKV 736
Query: 1266 HTIDKYQGRDKDCILVSFVRSS----ENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSC 1321
+++++QG++K I++S VRS+ E R L + R NVA+TRA L+++G+
Sbjct: 737 GSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNP 796
Query: 1322 RTLSK 1326
+ K
Sbjct: 797 HIICK 801
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 145/302 (48%), Gaps = 33/302 (10%)
Query: 1048 LDQVKVVAVTCLGITNPLLTDK--KFDVCIMDEAGQTTLPVSLGPLMFASK-FVLVGDHY 1104
L + +V T + LL + F I+DEA Q S+ PL + + V+VGD
Sbjct: 1485 LQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPN 1544
Query: 1105 QLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSC 1164
QLPP V S + + G SL+ R+ ++H ++ L QYRM I + Y +L
Sbjct: 1545 QLPPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLD 1604
Query: 1165 GSDEIANAKIKVSDLSSCSPWLKE-ALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
G + A + PW ++ L R F N A+ + ++L N EA
Sbjct: 1605 GPNMSA---------VTSRPWHEDPQLGIYR---FFNVHGTEAFS--NSKSLYNVEEASF 1650
Query: 1224 IAKITQELVKN----EIEGKDIGIITPYNSQANLIRH-------SLSVSSVEIHTIDKYQ 1272
I + + L++ + EGK IG++TPY SQ +R S+ ++IHT+D +Q
Sbjct: 1651 ILLLYERLIQCYLNIDFEGK-IGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQ 1709
Query: 1273 GRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKL 1332
G++KD I+ S VRSS + L D R+NVALTRAK L +VG+ + L + +
Sbjct: 1710 GQEKDIIIFSCVRSS---MSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYS 1766
Query: 1333 LI 1334
LI
Sbjct: 1767 LI 1768
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 904 LQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKSLNDDQRRAIIKVLTAKDYA 963
L+S + L + I+D R S F+ D I +N+ Q AI +
Sbjct: 1233 LKSLRHLPLSQRILDANVTRLPSN--FTDDKK-QKIMKSYGVNEPQAYAIYASSVNDGFT 1289
Query: 964 LILGMPGTGKTSTMVHAVKALLMRGA-----------------SILLTSYTNSAVDNLLI 1006
LI G PGTGKT T++ + A+L + IL+ + +N+A+D +L+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILL 1349
Query: 1007 KLKS-----QSIDF----VRIGRHEVVHKEIQKHCLSAMNINSVEEIKKRLDQ 1050
++K+ + I F +R+G + + ++ L I +E + DQ
Sbjct: 1350 RIKAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMIKQMELTNLKKDQ 1402
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 201/458 (43%), Gaps = 75/458 (16%)
Query: 946 NDDQRRAIIKVLTAKDYA---LILGMPGTGKTSTMVHAVKALL--MRGASILLTSYTNSA 1000
N +Q +A+ ++T +I G PGTGKT T+V A+K ++ + A IL + +NS
Sbjct: 500 NPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG 559
Query: 1001 VD----NLLIKLKSQSIDFVRIGRH-EVVHKEIQKHC-LSAMNINSVEEIKKRLDQVKVV 1054
D L + L S + R +V ++I+ C A V KK+L + +V+
Sbjct: 560 ADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVL 619
Query: 1055 AVTCLGITNPLLTDKKFDV-----CIMDEAGQTTLP---VSLGPLMF-------ASKFVL 1099
T IT L +F + +DEAG P V++ LM + VL
Sbjct: 620 ITTL--ITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVL 677
Query: 1100 VGDHYQLPPLVQSTEARENGMEISLFRRLSEEH-----------PQAISALQSQYRMCQG 1148
GD QL P+++S +++G+ SL RL + PQ I+ L YR
Sbjct: 678 AGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPT 737
Query: 1149 IMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCR--PVIFVNTDMLPA 1206
I+++ N L Y L +D V D W A P + P+IF M
Sbjct: 738 ILDIPNQLYYEGELQACAD--------VVDRERFCRW---AGLPRQGFPIIFHGV-MGKD 785
Query: 1207 YEAKDHQTLNNPVEACLIAKITQELV-------KNEIEGKDIGIITPYNSQANLIRHSLS 1259
+ + NP EA + + L+ K + + +G+I+PY Q IR+ ++
Sbjct: 786 EREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCIT 845
Query: 1260 -----------VSSVEIHTIDKYQGRDKDCILVSFVRSSEN----PRNCTSSLLGDWHRI 1304
+ +++ +++++QG+++ IL+S VRSS++ + L + R
Sbjct: 846 KLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRF 905
Query: 1305 NVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSG 1342
NVA+TRAK LI+VG+ L P K+ + E G
Sbjct: 906 NVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKENGG 943
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 194/437 (44%), Gaps = 72/437 (16%)
Query: 964 LILGMPGTGKTSTMVHAVKALL--MRGASILLTSYTNSAVD----NLLIKLKSQSIDFVR 1017
+I G PGTGKT T+V A+K ++ + A IL + +NS D L + L S +
Sbjct: 521 IIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLA 580
Query: 1018 IGRH-EVVHKEIQKHC-LSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLTDKKFDV-- 1073
R +V ++I+ C A + V KK+L + +V+ T IT L +F +
Sbjct: 581 PSRDIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTL--ITASRLVSAQFPIDH 638
Query: 1074 ---CIMDEAGQTTLP---VSLGPLMF-------ASKFVLVGDHYQLPPLVQSTEARENGM 1120
+DEAG P V++ LM + VL GD QL P+++ +++G+
Sbjct: 639 FTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGL 698
Query: 1121 EISLFRRL-----------SEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEI 1169
SL RL +PQ I+ L YR I+++ N L Y L +D
Sbjct: 699 GYSLLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACAD-- 756
Query: 1170 ANAKIKVSDLSSCSPWLKEALNPCR--PVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKI 1227
V D W E L P + P+IF M + + NP EA +
Sbjct: 757 ------VVDRERFCRW--EGL-PRQDFPIIFHGV-MGKDEREGNSPSFFNPEEAATVTSY 806
Query: 1228 TQELV-------KNEIEGKDIGIITPYNSQANLIRHSLS-----------VSSVEIHTID 1269
++L+ K + + +G+I+PY Q IR+ ++ + +++ +++
Sbjct: 807 LKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVE 866
Query: 1270 KYQGRDKDCILVSFVRSSEN----PRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLS 1325
++QG+++ IL+S VRSS++ + L + R NVA+TRAK LI+VG+ L
Sbjct: 867 EFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLG 926
Query: 1326 KVPLLKLLINKVGEQSG 1342
P K+ + E G
Sbjct: 927 HDPDWKVFLEFCKENGG 943
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 33/287 (11%)
Query: 1070 KFDVCIMDEAGQTTLPVSLGPLMFASK-FVLVGDHYQLPPLVQSTEARENGMEISLFRRL 1128
KFD I+DEA Q T S+ PL + K ++VGD QLPP V S A SLF R+
Sbjct: 1583 KFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRM 1642
Query: 1129 SEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKE 1188
E + L QYRM I + ++ Y RL G D+ + PW
Sbjct: 1643 --EKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPG---------MDILNKRPW--H 1689
Query: 1189 ALNPCRPVIFVNTDMLPAYEAKDHQTLN--NPVEACLIAKITQELVK---NEIE--GKDI 1241
L P P F D++ + ++ +T++ N E + ++ L + N+I+ GK I
Sbjct: 1690 QLEPLAPYKFF--DIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGK-I 1746
Query: 1242 GIITPYNSQANLIRHSLSV-------SSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCT 1294
GII+PY Q +R + S++ +TID +QG++K+ IL+S VR+ + +
Sbjct: 1747 GIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDT--KSS 1804
Query: 1295 SSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQS 1341
L D+ R+NVALTRAK + ++G R+L+K L + LI ++S
Sbjct: 1805 VGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRS 1851
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 34/126 (26%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKAL-------------------- 984
LN Q AI+ ++ + ++LI G PGTGKT T++ +
Sbjct: 1335 LNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNS 1394
Query: 985 -----LMRGASILLTSYTNSAVDNLLIKLKSQSID---------FVRIGRHEVVHKEIQK 1030
L++ IL+ + +N+AVD + ++LKS D VR+GR +VV+ I+
Sbjct: 1395 SNTEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSDVVNVAIKD 1454
Query: 1031 HCLSAM 1036
L +
Sbjct: 1455 LTLEEL 1460
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 202/448 (45%), Gaps = 80/448 (17%)
Query: 934 PALSYIWSEKSLNDDQRRAIIKVLTAKDYA---LILGMPGTGKTSTMVHAVKALL--MRG 988
PAL + N Q A+ ++ L+ G PGTGKT T+V A+K + +
Sbjct: 519 PALRLFDRKLEYNFQQYSAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNIPD 578
Query: 989 ASILLTSYTNSAVDNLLIKL-KSQSIDFVRIGRHEVV---HKEIQKHCLSAMNINSVEEI 1044
A IL + +NSA D L KL S+ +D +I R K+I K + N N EE+
Sbjct: 579 AYILACAPSNSAADQLCEKLITSEHVDAHKIYRLYASSRNQKDIPK--ILKDNCNVDEEM 636
Query: 1045 -----KKRLDQVKVVA---VTCLGITNPLLTDKKFDVCIMDEAG---QTTLPVSLGPLMF 1093
K+ L K++ VT + ++ F +DEAG ++ +S+ L+
Sbjct: 637 IDFPCKEDLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLN 696
Query: 1094 ASK--FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHP-----------QAISALQ 1140
A K VL GD QL P+++S A +G+++SL RL ++ + +S L
Sbjct: 697 AEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLI 756
Query: 1141 SQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCR--PVIF 1198
YR I+E+ N L Y L +DEI SS + E L P + PVIF
Sbjct: 757 MNYRSHPYILEVPNRLFYDGELKACADEI----------SSNQYCMWEHL-PSKGFPVIF 805
Query: 1199 VNTDMLPAYEAKDHQTLNNP-----VEACLIAKITQELVKNE-------IEGKDIGIITP 1246
KD + N+P E ++ ++L+ + I KDIGII P
Sbjct: 806 ------HGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAP 859
Query: 1247 YNSQANLIRHS----------LSVSSVEIHTIDKYQGRDKDCILVSFVRSSEN----PRN 1292
Y Q I+ + + + ++++ +++++QG+++ I+VS VRSS
Sbjct: 860 YRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDET 919
Query: 1293 CTSSLLGDWHRINVALTRAKKKLIMVGS 1320
L + R NVA+TRAK LIMVG+
Sbjct: 920 FNIGFLKNEKRFNVAVTRAKSLLIMVGN 947
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 142/293 (48%), Gaps = 38/293 (12%)
Query: 1071 FDVCIMDEAGQTTLPVSLGPLMF-ASKFVLVGDHYQLPPLVQSTEARENGMEISL---FR 1126
F I+DEAGQ+ +L PL+ +K +LVGD QLPP V S +A+E G + S+ F
Sbjct: 2175 FSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFC 2234
Query: 1127 RLSEEHPQ-------AISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDL 1179
RL EE+ + I L QYRM I + +Y L A I+ S
Sbjct: 2235 RLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEA---IRCS-- 2289
Query: 1180 SSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKN---EI 1236
S W P +P + D+ E +D+ + N E L+ +I + L+K+ ++
Sbjct: 2290 ---SDW------PFQPYLVF--DVGDGSERRDNDSYINVQEIKLVMEIIK-LIKDKRKDV 2337
Query: 1237 EGKDIGIITPYNSQANLIRHSLSV-----SSVEIHTIDKYQGRDKDCILVSFVRSSENPR 1291
++IGIIT Y +Q +I+ L E+ T+D +QGR KDC++V+ VR+ N
Sbjct: 2338 SFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRA--NSI 2395
Query: 1292 NCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGIL 1344
+ L R+NV +TRAK L ++G RTL + LI ++ I+
Sbjct: 2396 QGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAII 2448
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 39/132 (29%)
Query: 943 KSLNDDQRRAIIKVLTAKDYA-------LILGMPGTGKTSTMVHAVKALL---------- 985
+ N+DQ++AI ++ LI G PGTGK+ T+V + LL
Sbjct: 1932 RDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSD 1991
Query: 986 ------MRGASILLTSYTNSAVDNLLIKL----------------KSQSIDFVRIGRHEV 1023
++ +L+ + +N+AVD L+ K+ I+ VR+G +
Sbjct: 1992 ENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKS 2051
Query: 1024 VHKEIQKHCLSA 1035
++ E+ K L +
Sbjct: 2052 INSEVLKFSLDS 2063
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 135/274 (49%), Gaps = 40/274 (14%)
Query: 1071 FDVCIMDEAGQTTLPVSLGPLMF-ASKFVLVGDHYQLPPLVQSTEARENGMEISL---FR 1126
F I+DEAGQ+ +L PL+ +K +LVGD QLPP V S +A+E G + S+ F
Sbjct: 2151 FSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFC 2210
Query: 1127 RLSEEHPQA-------ISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDL 1179
+L EE+ + + L QYRM I + +Y L ++++
Sbjct: 2211 KLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTN---------RLTES 2261
Query: 1180 SSCS-PWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVK---NE 1235
CS W P +P + D+ E +D+ + N E L+ +I + L+K +
Sbjct: 2262 IRCSSEW------PFQPYLVF--DVGDGSERRDNDSYINVQEIKLVMEIIK-LIKEKRKD 2312
Query: 1236 IEGKDIGIITPYNSQANLIRHSLSV-----SSVEIHTIDKYQGRDKDCILVSFVRSSENP 1290
I ++IGIIT Y +Q +I+ L E+ T+D +QGR KDCI+V+ VR+S
Sbjct: 2313 ISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRAS--A 2370
Query: 1291 RNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTL 1324
+ L R+NV +TRAK L ++G RTL
Sbjct: 2371 VQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL 2404
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 39/132 (29%)
Query: 943 KSLNDDQRRAIIKVLTAKDYA-------LILGMPGTGKTSTMVHAVKALLM----RGAS- 990
K N+DQ++AI ++ LI G PGTGK+ T+V + LL +G S
Sbjct: 1908 KDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSD 1967
Query: 991 -----------ILLTSYTNSAVDNLLIKL----------------KSQSIDFVRIGRHEV 1023
+L+ + +N+AVD L+ K+ I+ VR+G +
Sbjct: 1968 ENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKS 2027
Query: 1024 VHKEIQKHCLSA 1035
++ E+ K L +
Sbjct: 2028 INTEVLKFSLDS 2039
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 37/316 (11%)
Query: 1042 EEIKKRLDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMF---ASKFV 1098
E K LD+ +V+ TC + L ++DEAG T P +L PL+ A K V
Sbjct: 2325 EARKFELDRHEVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVV 2384
Query: 1099 LVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIY 1158
L+GDH QL P+V++ + G++ SLF R E+ L +QYRM +GI + Y
Sbjct: 2385 LLGDHKQLRPVVKNERLQNLGLDRSLFERYHED----AHMLDTQYRMHEGICAFPSVAFY 2440
Query: 1159 GDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTD-----MLPAYEAKDHQ 1213
+L L L A PVIF + +L + + +
Sbjct: 2441 KSKLK-----------TWQGLRRPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNEN 2489
Query: 1214 TLNNPVEACLIAKITQEL-VKNEIEGKDIGIITPYNSQANLIRHSL---SVSSVEIHTID 1269
+ N E + +IT++L + +E +DI ++TPYN+QA+ I +L ++ V + +I
Sbjct: 2490 SKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGIAGVAVSSIT 2549
Query: 1270 KYQGRDKDCILVSFVRSS------ENP-RNCTSSLLG---DWHRINVALTRAKKKLIMVG 1319
K QG + +LVS VR+ + P ++ LG D +++NVA+TRA++ L ++G
Sbjct: 2550 KSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIG 2609
Query: 1320 SCRTLSKVPLLKLLIN 1335
L PL + L++
Sbjct: 2610 DHLLLRCCPLWRSLLD 2625
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 169/434 (38%), Gaps = 61/434 (14%)
Query: 935 ALSYIWSEKSLNDDQRRAIIKVLTAKDYA----------LILGMPGTGKTSTMVHAVKAL 984
AL WS L R+ + V + LI G GTGKT T+ A +
Sbjct: 502 ALPRPWSVPPLRRGNRKQELAVALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLEV 561
Query: 985 LMRGAS-ILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHE-----VVHKE----------I 1028
+ R + +L+ ++TNSA D I ++ V G E V++ + +
Sbjct: 562 IRRPETKVLICTHTNSAAD---IYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTL 618
Query: 1029 QKHCLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSL 1088
Q CL+ + L + +VV T + F ++DEA Q +L
Sbjct: 619 QYCCLTDDRQAFRPPTRAELARHRVVVTTTSQARELRVPVGFFSHILIDEAAQMLECEAL 678
Query: 1089 GPLMFAS---KFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRM 1145
PL +AS + VL GDH Q+ P + S AR E +L RL + Q + Q R
Sbjct: 679 TPLAYASHGTRLVLAGDHMQVTPRLFSV-ARARAAEHTLLHRLFLCYQQETHEVARQSR- 736
Query: 1146 CQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCR----PVIFVNT 1201
L++ + C +D I + + ++ +P P P++F +
Sbjct: 737 ----------LVFHENYRC-TDAIVSFISRHFYVAKGNPIHARGKVPPHPRHYPLMFCHV 785
Query: 1202 DMLPAYEAKDHQTLNNPVEACLIAKI-----TQELVKNEIEGKDIGIITPYNSQANLIRH 1256
P + LN A ++ K+ T E + I +++ + +Q + +R
Sbjct: 786 AGSPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQ 844
Query: 1257 SL---SVSSVEIHTIDKYQGRDKDCILVSFVRSSE---NPRNCTSSLLGDWHRINVALTR 1310
L + V + + + GR +++S V + + +P D +N LTR
Sbjct: 845 ELRRRDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTR 904
Query: 1311 AKKKLIMVGSCRTL 1324
A+ +L++VG L
Sbjct: 905 AQSQLVVVGDAVAL 918
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 135/294 (45%), Gaps = 31/294 (10%)
Query: 1045 KKRLDQVKVVAVTCLGITNPLL--TDKKFDVCIMDEAGQTTLPVSLGPLMF-ASKFVLVG 1101
K L Q VV T G + L+ + F I+DEA Q ++ PL + A K +LVG
Sbjct: 1344 KAILKQADVVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVG 1403
Query: 1102 DHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDR 1161
D QLPP V S +A SLF R+ + + L QYRM I + Y R
Sbjct: 1404 DPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSR 1463
Query: 1162 LSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEA 1221
L G D +A +V W +NP + + D+ + + N E
Sbjct: 1464 LEDG-DNMAEKTQQV--------W---HVNP-KFTQYRLFDVRGKERTSNTMSTYNLEEV 1510
Query: 1222 CLIAKITQELVKN----EIEGKDIGIITPYNSQANLIRHSLSV-------SSVEIHTIDK 1270
+ + EL+ G+ IG+ITPY SQ + +R + V S+++I T+D
Sbjct: 1511 EYLVNMVDELLNKFPDVNFTGR-IGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDG 1569
Query: 1271 YQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTL 1324
+QG++KD I S V+S L D+ R+NVALTRA+ L+++G+ TL
Sbjct: 1570 FQGQEKDIIFFSCVKSYSKH---GIGFLRDFRRLNVALTRARSSLLIIGNMETL 1620
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 27/112 (24%)
Query: 945 LNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLM------------------ 986
+N+ Q +AI+ L + LI G PGTGKT T++ + ALL+
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 987 RGASILLTSYTNSAVDNLLIKLKSQSI---------DFVRIGRHEVVHKEIQ 1029
ILL + +N+AVD +L++LK + VRIG E ++ ++
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSVR 1241
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 216/543 (39%), Gaps = 126/543 (23%)
Query: 901 QLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIW------SEKSLNDDQRRAII 954
+L SAQ+S++ + + P+F + Q P + S LN Q+ A+
Sbjct: 600 KLLPTSAQTSRILFAMTRITNPKFID-LLLGQKPIKEIYFDNRLKFSSDKLNRSQKTAVE 658
Query: 955 KVLTAKDYALILGMPGTGKTSTMVHAVKALLMR--GASILLTSYTNSAVDNLLIKLKSQ- 1011
VL ++ G PGTGKTST+ + ++ R IL + +N A+DN+ K+
Sbjct: 659 HVLN-NSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENR 717
Query: 1012 -SIDFVRI---------------GR---HEVVHKEIQKHCLSAMN-------INSVEEIK 1045
I +RI G H +V+K + N I+ E+ K
Sbjct: 718 PQIKILRILSKKKEQQYSDDHPLGEICLHNIVYKNLSPDMQVVANKTRRGEMISKSEDTK 777
Query: 1046 ----------KRLDQVKVVAVTCLGITN-PLLTDKKFDVCIMDEAGQTTLPVSLGPLMFA 1094
K + Q +++ T + L K+ V IMDEA Q++ +L PL
Sbjct: 778 FYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLP 837
Query: 1095 S--KFVLVGDHYQLPPLVQSTEARENGMEISLFRR-LSEEHPQAISALQSQYRMCQGIME 1151
FV VGD QL + +E SLF R LS + L +QYRM I E
Sbjct: 838 GIRNFVFVGDEKQLSSFSNIPQ-----LETSLFERVLSNGTYKNPLMLDTQYRMHPKISE 892
Query: 1152 LSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKD 1211
IY L G V+D P ++ P+ F D+ P +
Sbjct: 893 FPIKKIYNGELKDG----------VTDEQKAWPGVQH------PLFFYQCDLGPESRVRS 936
Query: 1212 HQ------TLNNPVEACLIAKITQEL-VKNEIEGKDIGIITPYNSQANLIRHSLS----- 1259
Q T N E I KI Q L + ++ ++IG+ITPY++Q +L+ L+
Sbjct: 937 TQRDIVGFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVI 996
Query: 1260 ------------------------------------VSSVEIHTIDKYQGRDKDCILVSF 1283
++ + + T+D +QG +K I+ S
Sbjct: 997 NPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSC 1056
Query: 1284 VR-SSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKV-PLLKLLINKVGEQS 1341
VR ++EN L D R+NVALTRAK LI+VG+ L K PL K I + EQ
Sbjct: 1057 VRNNTEN----KIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQE 1112
Query: 1342 GIL 1344
I
Sbjct: 1113 VIF 1115
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 184/448 (41%), Gaps = 84/448 (18%)
Query: 940 WSEK---SLNDDQRRAIIKVLTAKDY----ALILGMPGTGKTSTMVHAVKALLMRGAS-I 991
W E+ LN Q+ AI+ + T LI+G GTGKT T+ AVK +L + S +
Sbjct: 627 WDEQLDPRLNAKQKEAILAITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPESRV 686
Query: 992 LLTSYTNSAVDNLLIKLKSQSIDFVRIGRH--------------EVVHKEIQKHCL-SAM 1036
L+ +++NSA D + +K +V G + VH +Q++CL S
Sbjct: 687 LICTHSNSAAD---LYIKDYLHPYVEAGNPHARPLRVYFRNRWVKTVHPLVQQYCLISGA 743
Query: 1037 NINSVEEIKKRLDQVKVVAVTCLGITNPL----LTDKKFDVCIMDEAGQTTLPVSLGPLM 1092
+ ++ +++ +VV VT L + L L F ++DEA Q ++ PL
Sbjct: 744 HFTFQMPTRQDVERHRVVVVT-LSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLA 802
Query: 1093 FA---SKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISA---LQSQYRMC 1146
A ++ VL GDH QL P V S ARE + +SL RL E +P L YR
Sbjct: 803 LAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSH 862
Query: 1147 QGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPA 1206
+ I+ ++ L Y +L + + P+ F
Sbjct: 863 EAIINYTSDLFYEGKLMASGKQPPHKDFY-------------------PLTFFTARGEDV 903
Query: 1207 YEAKDHQTLNNPVEACLIAKITQELVK------NEIEGKDIGIITPYNSQANLIRHSL-- 1258
E NN E I + +E+ K ++E IG+++PY Q IR L
Sbjct: 904 QEKNSTAYYNN-AEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRK 962
Query: 1259 -SVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSL------------------LG 1299
+S V + + QG+ + +S VR+ ++ +++ L
Sbjct: 963 KRMSEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLS 1022
Query: 1300 DWHRINVALTRAKKKLIMVGSCRTLSKV 1327
++ +N A+TRA+ + +VG L V
Sbjct: 1023 NYKLLNTAITRAQSLVAVVGDPIALCSV 1050
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 189/461 (40%), Gaps = 89/461 (19%)
Query: 925 DSGSVF---SQDPALSYI----WSEK---SLNDDQRRAIIKVLTAKDY----ALILGMPG 970
D+G +F S P + + W E+ LN Q+ A++ + T LI+G G
Sbjct: 612 DNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYG 671
Query: 971 TGKTSTMVHAVKALLMRGAS-ILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEV------ 1023
TGKT T+ AVK +L + + IL+ +++NSA D + +K +V G +
Sbjct: 672 TGKTFTLAQAVKHILQQQETRILICTHSNSAAD---LYIKDYLHPYVEAGNPQARPLRVY 728
Query: 1024 --------VHKEIQKHCLSAMNINSVEEIKKRLDQVK-VVAVTCLGITNPL----LTDKK 1070
VH + ++CL + + +S ++ ++ D +K V V L + L L
Sbjct: 729 FRNRWVKTVHPVVHQYCLIS-SAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGF 787
Query: 1071 FDVCIMDEAGQTTLPVSLGPLMFAS---KFVLVGDHYQLPPLVQSTEARENGMEISLFRR 1127
F ++DEA Q ++ PL A+ + VL GDH QL P V S ARE + +SL R
Sbjct: 788 FTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDR 847
Query: 1128 LSEEHPQAISA---LQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSP 1184
L E +P L YR + I+ ++ L Y +L + A+
Sbjct: 848 LYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDF---------- 897
Query: 1185 WLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVK-----NEIEGK 1239
P+ F E NN ++ ++ + K +++
Sbjct: 898 ---------YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDG 948
Query: 1240 DIGIITPYNSQANLIRHSL---SVSSVEIHTIDKYQGRDKDCILVSFVRS------SENP 1290
IG++TPY Q IR L +S V + + QG+ + +S VR+ + P
Sbjct: 949 SIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTP 1008
Query: 1291 RNCTSSLLGD------------WHRINVALTRAKKKLIMVG 1319
LL D + +N A+TRA+ + +VG
Sbjct: 1009 IKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1049
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 178/439 (40%), Gaps = 82/439 (18%)
Query: 940 WSEK---SLNDDQRRAIIKVLTAKDY----ALILGMPGTGKTSTMVHAVKALLMRGAS-I 991
W E+ LN Q+ A++ + T LI+G GTGKT T+ A K +L + + I
Sbjct: 634 WDEQLDPRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQETRI 693
Query: 992 LLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEV--------------VHKEIQKHCLSAMN 1037
L+ +++NSA D + +K +V G + VH + ++CL + +
Sbjct: 694 LICTHSNSAAD---LYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLIS-S 749
Query: 1038 INSVEEIKKRLDQVK-VVAVTCLGITNPL----LTDKKFDVCIMDEAGQTTLPVSLGPLM 1092
S ++ ++ D +K V V L + L L F ++DEA Q ++ PL
Sbjct: 750 TQSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLA 809
Query: 1093 FASK---FVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISA---LQSQYRMC 1146
A+K VL GDH QL P V S ARE + +SL RL E +P L YR
Sbjct: 810 LATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSH 869
Query: 1147 QGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPA 1206
+ I+ ++ L Y +L + A+ P+ F
Sbjct: 870 EAIINYTSELFYEGKLMASGKQPAHKDF-------------------YPLTFFTARGEDV 910
Query: 1207 YEAKDHQTLNNPVEACLIAKITQELVK-----NEIEGKDIGIITPYNSQANLIRHSL--- 1258
E NN ++ ++ + K +++ IG++TPY Q IR L
Sbjct: 911 QEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK 970
Query: 1259 SVSSVEIHTIDKYQGRDKDCILVSFVRS------SENPRNCTSSLLGD------------ 1300
+S V + + QG+ + +S VR+ + P LL D
Sbjct: 971 RLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSN 1030
Query: 1301 WHRINVALTRAKKKLIMVG 1319
+ +N A+TRA+ + +VG
Sbjct: 1031 YKLLNTAITRAQSLVAVVG 1049
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 28/303 (9%)
Query: 1048 LDQVKVVAVTCLGITN--PLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASK-FVLVGDHY 1104
L +VV +T G +L + + I++EA + ++ L A + +L+GDH
Sbjct: 975 LKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQ 1034
Query: 1105 QLPPLVQSTEAREN-GMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLS 1163
QL P + +N +E+SLF RL + + + L Q+RMC I L IY D L
Sbjct: 1035 QLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVR-LNYQHRMCPEIARLLTPHIYQD-LE 1092
Query: 1164 CGSDEIANAKIKVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
+ KIK +SS + FV + P E ++ ++ N EA
Sbjct: 1093 NHPSVLKYEKIK--GVSS-------------NLFFVEHN-FPEQEIQEGKSHQNQHEAHF 1136
Query: 1224 IAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL---SVSSVEIHTIDKYQGRDKDCIL 1280
+ ++ + + E I I+T Y Q +R + + + V +H +DKYQG + D IL
Sbjct: 1137 VVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIIL 1196
Query: 1281 VSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQ 1340
+S VRS++ + L +RI VAL+RAKK + +G+ + L+KVPL +I+ + E
Sbjct: 1197 LSLVRSNQEGK---VGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLREN 1253
Query: 1341 SGI 1343
+ I
Sbjct: 1254 NQI 1256
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 896 RYNLVQLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKS---LNDDQRRA 952
RY+ L + + + R + L PR + DP W K L+D Q A
Sbjct: 554 RYDFTPLIENPSATGEFLRNVEGLRHPRINV-----LDPGQ---WPSKEALKLDDSQMEA 605
Query: 953 IIKVLTAKDYALILGMPGTGKTSTMVHAVKALL---------MRGASILLTSYTNSAVDN 1003
+ LT ++ A+I G PGTGKT + V+ALL ++ IL+ YTN A+D
Sbjct: 606 LQFALT-RELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNHALDQ 664
Query: 1004 LLIKL-KSQSIDFVRIG 1019
L + Q VR+G
Sbjct: 665 FLEGIYNCQKTSIVRVG 681
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 143/314 (45%), Gaps = 46/314 (14%)
Query: 1049 DQVKVVAVTCLGITNPLLTDKKFDVCI--MDEAGQTTLPVSLGPL--MFASKFVLVGDHY 1104
D V V A + G+ N L DVC +DEA Q LG L + F L+GD +
Sbjct: 1184 DLVMVTADSAKGLLNILR-----DVCAVQIDEASQLAECTLLGLLKSFNNASFGLIGDIH 1238
Query: 1105 QLPPLVQSTEARENGMEISL--------FRRLSEEHPQAISALQSQYRMCQGIMELSNAL 1156
QLPP E G+E L R +E + L++ YR EL + L
Sbjct: 1239 QLPPYC------EEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSEL 1292
Query: 1157 IYGDRLSCGSDEIANAKI--KVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQT 1214
Y L G E+A + K D W NP P++FVN K +
Sbjct: 1293 FYDGALVSGVSELARSDFMTKRDDF-----WP----NPKFPMMFVNNT---GASTKMGTS 1340
Query: 1215 LNNPVEACLIAKITQELV---KNEIEGKDIGIITPYNSQANLIRHSLSVSSVEIHTIDKY 1271
+N E ++ +I Q L+ +N + DIG+I+ Y++Q +++ L S V+ T+D +
Sbjct: 1341 TSNSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKCGTVDAF 1400
Query: 1272 QGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLK 1331
QG +K+ I++ S N R S + +R+NVA++RAK+ I++G L +
Sbjct: 1401 QGSEKEIIIM----CSTNER--ISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWS 1454
Query: 1332 LLINKVGEQSGILN 1345
++NK+ + ++N
Sbjct: 1455 TIVNKIEQNGNLVN 1468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,449,397
Number of Sequences: 539616
Number of extensions: 20762320
Number of successful extensions: 57737
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 57154
Number of HSP's gapped (non-prelim): 367
length of query: 1345
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1215
effective length of database: 121,419,379
effective search space: 147524545485
effective search space used: 147524545485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)