BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000699
(1345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 276 bits (705), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 225/382 (58%), Gaps = 39/382 (10%)
Query: 88 ENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSIN----------GH----T 133
ENL S V+V+VR RP+N +E KV D + + H T
Sbjct: 12 ENLYFQGSSESVRVVVRCRPMNGKEKAASY--DKVVDVDVKLGQVSVKNPKGTAHEMPKT 69
Query: 134 FTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEE 193
FTFD+V D A Q +++ PLV++ L GFN ++FAYGQTG+GKTYTM G
Sbjct: 70 FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG----- 124
Query: 194 NLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ-RN 252
+++G+ P F+ +F+ I+ Q + Y R S+LEIY E+I DLL Q +
Sbjct: 125 --DPEKRGVIPNSFDHIFTHISRSQNQQ------YLVRASYLEIYQEEIRDLLSKDQTKR 176
Query: 253 LQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVV 312
L+++E +GVYV++L+ ++K++ ++ G NR GAT++N SSRSH++F +
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 313 ESRCKSKA-DGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
E C DG + + ++NLVDLAGSERQ TGA GERLKEA IN SLS LGN+I+
Sbjct: 237 E--CSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISA 294
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + GK HIPYRDS+LT LLQ+SLGGNAK M+ + PA ET +TLR+A RA
Sbjct: 295 LVD----GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRA 350
Query: 432 KAIKNKAVVNEVMQDDVNYLRE 453
K IKNK VNE +D + LRE
Sbjct: 351 KNIKNKPRVNEDPKDAL--LRE 370
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 273 bits (698), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/353 (43%), Positives = 219/353 (62%), Gaps = 25/353 (7%)
Query: 95 SDSGVKVIVRMRPLNKEENE--GEMIVQKVADDSLSINGH----TFTFDSVADMEATQLD 148
S + +KV+ R RP N+ E E G+ IV D+ +++ +FTFD V DM Q D
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFE 208
+F P V++ L+G+N +VFAYGQTG+GK+YTM G + +++ D +G+ PR+ E
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTS---IDD---PDGRGVIPRIVE 117
Query: 209 RLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENL 268
++F+ I + + Y R S++EIY E+I DLL P NL + E+ GVYV+ L
Sbjct: 118 QIFT-----SILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGL 172
Query: 269 TEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKS 328
E YV ++++V +++ +G + R AT++N ESSRSHS+F + + KS
Sbjct: 173 LEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA----KS 228
Query: 329 SRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRD 388
++ LVDLAGSE+ TGA+G+ L+EA INKSLS LG +IN L + GK H+PYRD
Sbjct: 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD----GKSSHVPYRD 284
Query: 389 SRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVN 441
S+LT +LQESLGGN++ +I SP+ +ET STLRF RAK+IKNKA VN
Sbjct: 285 SKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 211/371 (56%), Gaps = 42/371 (11%)
Query: 94 VSDSGVKVIVRMRPLNK-------------EENEGEMIV-----QKVADDSLSINGHTFT 135
+S +KVIVR RPLN +E ++IV +K A + + TFT
Sbjct: 1 MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKV-PRTFT 59
Query: 136 FDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENL 195
FD+V D + +FQ PL++ L GFNS++FAYGQTG+GKT+TM G
Sbjct: 60 FDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG---------- 109
Query: 196 SSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQI 255
+ ++ G P F+ LF IN + N+ S+LE+YNE+I DL+ + + L +
Sbjct: 110 NKEEPGAIPNSFKHLFDAINS-----SSSNQNFLVIGSYLELYNEEIRDLIKNNTK-LPL 163
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
+ED G+YV+ L+ V T +++ L+ KG +NR AT +N SSRSHS+F +E
Sbjct: 164 KEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIE-- 221
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
C + + ++NLVDLAGSERQ TGA GE L E IN SLS LG +I+ L E
Sbjct: 222 CSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG 281
Query: 376 SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
+ HIPYRDS+LT LLQ+SLGGN+K M ISPA + ET STLR+A RAK IK
Sbjct: 282 AT-----HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
Query: 436 NKAVVNEVMQD 446
NK +NE +D
Sbjct: 337 NKPRINEDPKD 347
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 253 bits (647), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 221/380 (58%), Gaps = 41/380 (10%)
Query: 87 PENLVPGVSDSGVKVIVRMRPLNKEE--NEGEMIVQKVADDSLSINGH-------TFTFD 137
P N+ PG S VKV VR+RP N E + + I+Q + +N +F+FD
Sbjct: 14 PINM-PGAS---VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFD 69
Query: 138 -------SVADME-ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANA 189
S D+ A+Q V++ +G ++++ G+N +FAYGQTG+GK+YTM G
Sbjct: 70 YSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-- 127
Query: 190 LLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS 249
DQQG+ P++ E LFSRIN+ + ++Y S++EIY E++ DLL+P
Sbjct: 128 ------EKDQQGIIPQLCEDLFSRINDT----TNDNMSYSVEVSYMEIYCERVRDLLNPK 177
Query: 250 QR-NLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVF 308
+ NL++RE G YVE+L++ V + D+ L+ G R AT++N SSRSH+VF
Sbjct: 178 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVF 237
Query: 309 TCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNL 368
+ + I+ K S+I+LVDLAGSER TGA G RLKE NINKSL+ LG +
Sbjct: 238 NIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKV 297
Query: 369 INILAEV-------SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSET 421
I+ LAE+ + K IPYRDS LT+LL+E+LGGN++ AM+ A+SPA ET
Sbjct: 298 ISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET 357
Query: 422 FSTLRFAQRAKAIKNKAVVN 441
STLR+A RAK I+N VN
Sbjct: 358 LSTLRYADRAKQIRNTVSVN 377
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 252 bits (644), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 37/373 (9%)
Query: 94 VSDSGVKVIVRMRPLNKEE--NEGEMIVQKVADDSLSINGH-------TFTFD------- 137
++ + VKV VR+RP N E + + I+Q + +N +F+FD
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 138 SVADME-ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLS 196
S D+ A+Q V++ +G ++++ G+N +FAYGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--------E 112
Query: 197 SDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQR-NLQI 255
DQQG+ P++ E LFSRIN+ + ++Y S++EIY E++ DLL+P + NL++
Sbjct: 113 KDQQGIIPQLCEDLFSRINDT----TNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
RE G YVE+L++ V + D+ L+ G R AT++N SSRSH+VF + +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
I+ K S+I+LVDLAGSER TGA G RLKE NINKSL+ LG +I+ LAE+
Sbjct: 229 RHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 376 -------SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFA 428
+ K IPYRDS LT+LL+E+LGGN++ AM+ A+SPA ET STLR+A
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 429 QRAKAIKNKAVVN 441
RAK I+N VN
Sbjct: 349 DRAKQIRNTVSVN 361
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 252 bits (644), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 209/355 (58%), Gaps = 29/355 (8%)
Query: 95 SDSGVKVIVRMRPLN-KEENEGEMIVQK----VADDSLSINGHTFTFDSVADMEATQLDV 149
++ +KV+ R RPLN EE G V K V ++ +SI G + FD V A+Q V
Sbjct: 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKV 68
Query: 150 FQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFER 209
+ +V + L+G+N ++FAYGQT SGKT+TM G S +QG+ PR+
Sbjct: 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIG-------DSVKQGIIPRIVND 121
Query: 210 LFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLT 269
+F+ I ++ L + + S+ EIY ++I DLLD S+ NL + ED YV+ T
Sbjct: 122 IFNHIYAMEV-----NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGAT 176
Query: 270 EEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFK-- 327
E +V + +DV +++ +G SNR T++N SSRSHSVF V K + + K
Sbjct: 177 ERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINV------KQENLENQKKL 230
Query: 328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYR 387
S ++ LVDLAGSE+ TGA G L EA NINKSLS LGN+I+ LA+ G + HIPYR
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD----GNKTHIPYR 286
Query: 388 DSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNE 442
DS+LT +LQESLGGNA+ ++ SPA +SET STL F +RAK +KN VNE
Sbjct: 287 DSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE 341
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 252 bits (644), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 216/362 (59%), Gaps = 40/362 (11%)
Query: 97 SGVKVIVRMRPLNKEENE------GEMIVQKVADDSLSIN---------GHTFTFD---- 137
S VKV VR+RP+N+ E + ++ KV + ++ N F +D
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 138 ----SVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEE 193
SV + A Q VF+ +G +++N G+N+ +FAYGQTGSGK+YTM G A
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA------ 114
Query: 194 NLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDP--SQR 251
DQ GL PR+ LF R +E+ +++ +++ S++EIYNE++ DLLDP S++
Sbjct: 115 ----DQPGLIPRLCSGLFERTQKEE----NEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQ 166
Query: 252 NLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
L++RE G YV+ L++ V + KD+ L+ +G +R AT++N ESSRSH+VF
Sbjct: 167 TLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 226
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ G S K +++LVDLAGSER TGAAG+RLKE NINKSL+ LG +I+
Sbjct: 227 LTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISA 286
Query: 372 LAEVSQT-GKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQR 430
LA+ S K + +PYRDS LT+LL++SLGGN+K AM+ +SPA ET STLR+A R
Sbjct: 287 LADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
Query: 431 AK 432
AK
Sbjct: 347 AK 348
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 37/373 (9%)
Query: 94 VSDSGVKVIVRMRPLNKEE--NEGEMIVQKVADDSLSINGH-------TFTFD------- 137
++ + VKV VR+RP N E + + I+Q + +N +F+FD
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 138 SVADME-ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLS 196
S D+ A+Q V++ +G ++++ G+N +FAYGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--------E 112
Query: 197 SDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQR-NLQI 255
DQQG+ P++ E LFSRIN+ + ++Y S++EIY E++ DLL+P + NL++
Sbjct: 113 KDQQGIIPQLCEDLFSRINDT----TNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
RE G YVE+L++ V + D+ L+ G R AT++N SSRSH+VF + +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
I+ K S+I+LVDLAGSER TGA G RLKE NINKSL+ LG +I+ LAE+
Sbjct: 229 RHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 376 -------SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFA 428
+ K IPYRDS LT+LL+E+LGGN++ AM+ A+SPA ET STLR+A
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 429 QRAKAIKNKAVVN 441
RAK I+N VN
Sbjct: 349 DRAKQIRNTVSVN 361
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 37/373 (9%)
Query: 94 VSDSGVKVIVRMRPLNKEE--NEGEMIVQKVADDSLSINGH-------TFTFD------- 137
++ + VKV VR+RP N E + + I+Q + +N +F+FD
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 138 SVADME-ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLS 196
S D+ A+Q V++ +G ++++ G+N +FAYGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--------E 112
Query: 197 SDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQR-NLQI 255
DQQG+ P++ E LFSRIN+ + ++Y S++EIY E++ DLL+P + NL++
Sbjct: 113 KDQQGIIPQLCEDLFSRINDT----TNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
RE G YVE+L++ V + D+ L+ G R AT++N SSRSH+VF + +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
I+ K S+I+LVDLAGSER TGA G RLKE NINKSL+ LG +I+ LAE+
Sbjct: 229 RHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 376 -------SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFA 428
+ K IPYRDS LT+LL+E+LGGN++ AM+ A+SPA ET STLR+A
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 429 QRAKAIKNKAVVN 441
RAK I+N VN
Sbjct: 349 DRAKQIRNTVSVN 361
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 249 bits (636), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 164/405 (40%), Positives = 225/405 (55%), Gaps = 61/405 (15%)
Query: 88 ENLVPGVSDSGVKVIVRMRPLN-KEENEG--EMIVQKVADDSLSING---------HTFT 135
ENL + +KV+ R RPL+ KEE G +++ V +++ TFT
Sbjct: 12 ENLYFQGASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFT 71
Query: 136 FDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENL 195
FD+V D + Q D++ PL+++ L GFN +VFAYGQTG+GKTYTM G +E L
Sbjct: 72 FDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG---TWVEPEL 128
Query: 196 SSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLL--DPSQRNL 253
+G+ P FE +F+ I+ Q + Y R S+LEIY E+I DLL +P +R L
Sbjct: 129 ----RGVIPNAFEHIFTHISRSQNQQ------YLVRASYLEIYQEEIRDLLSKEPGKR-L 177
Query: 254 QIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVE 313
+++E+ ++GVY+++L+ +K++ ++ G R G+T +N SSRSH++F VE
Sbjct: 178 ELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE 237
Query: 314 SRCKSKA-DGISRFKSSRINLVDLAGSERQKLTG---AAG-------------------- 349
C + DG + ++NLVDLAGSERQ G A G
Sbjct: 238 --CSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAG 295
Query: 350 -ERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMI 408
ER KEA IN SLS LGN+I LA T HIPYRDS+LT LLQ+SLGGNAK M+
Sbjct: 296 GERPKEASKINLSLSALGNVIAALAGNRST----HIPYRDSKLTRLLQDSLGGNAKTIMV 351
Query: 409 CAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLRE 453
+ PA E+ STLRFA RAK IKNK VNE +D + LRE
Sbjct: 352 ATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTL--LRE 394
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 249 bits (636), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 214/361 (59%), Gaps = 29/361 (8%)
Query: 96 DSGVKVIVRMRPLN-KEENEGEM--IVQKVADDSL-SING-HTFTFDSVADMEATQLDVF 150
+ V V VR+RPLN +EE+ GE + K ++ + ++G +F FD V T +V+
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVY 62
Query: 151 QLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERL 210
+ + P++++ + G+N ++FAYGQT SGKTYTM G S D G+ PR +
Sbjct: 63 EEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----------SEDHLGVIPRAIHDI 112
Query: 211 FSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRN--LQIREDVKSGVYVENL 268
F +I K D++ + R S++EIYNE ITDLL +Q+ L IREDV VYV +L
Sbjct: 113 FQKIK----KFPDRE--FLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADL 166
Query: 269 TEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGI-SRFK 327
TEE V T + + + KG +R G T +N SSRSH++F ++ESR K + K
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYR 387
S +NLVDLAGSER TGAAG RLKE NIN+SL LG +I L++ Q G I YR
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGG--FINYR 283
Query: 388 DSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD 447
DS+LT +LQ SLGGNAK +IC I+P ET + L+FA AK +KN VNEV D+
Sbjct: 284 DSKLTRILQNSLGGNAKTRIICTITPVSF--DETLTALQFASTAKYMKNTPYVNEVSTDE 341
Query: 448 V 448
+
Sbjct: 342 L 342
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 203/350 (58%), Gaps = 23/350 (6%)
Query: 94 VSDSGVKVIVRMRPLNKEE-NEGEMIVQKV-ADDSLSINGHTFTFDSVADMEATQLDVFQ 151
+++ +KV+ R RPLN+ E N G+ + K +D++ I + FD V +Q V+
Sbjct: 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLF 211
+V++ L G+N ++FAYGQT SGKT+TM G + + G+ PR+ + +F
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH-------DPEGMGIIPRIVQDIF 116
Query: 212 SRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEE 271
+ I D+ L + + S+ EIY ++I DLLD S+ NL + ED YV+ TE
Sbjct: 117 N-----YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 272 YVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRI 331
+VC+ +V + +G SNR T++N SSRSHS+F V K + + S ++
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV----KQENTQTEQKLSGKL 227
Query: 332 NLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRL 391
LVDLAGSE+ TGA G L EA NINKSLS LGN+I+ LAE S ++PYRDS++
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-----YVPYRDSKM 282
Query: 392 TFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVN 441
T +LQ+SLGGN + ++ SP+ +SET STL F QRAK IKN VN
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 201/349 (57%), Gaps = 23/349 (6%)
Query: 95 SDSGVKVIVRMRPLNKEE-NEGEMIVQKV-ADDSLSINGHTFTFDSVADMEATQLDVFQL 152
++ +KV+ R RPLN+ E N G+ V K +D++ I + FD V +Q V+
Sbjct: 5 AECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKPYAFDRVFQSSTSQEQVYND 64
Query: 153 VGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFS 212
+V++ L G+N ++FAYGQT SGK +TM G + + G+ PR+ + +F+
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLH-------DPEGMGIIPRIVQDIFN 117
Query: 213 RINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEY 272
I D+ L + + S+ EIY ++I DLLD S+ NL + ED YV+ TE +
Sbjct: 118 -----YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF 172
Query: 273 VCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRIN 332
VC+ +V + +G SNR T++N SSRSHS+F V K + + S ++
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV----KQENTQTEQKLSGKLY 228
Query: 333 LVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLT 392
LVDLAGSE+ TGA G L EA NINKSLS LGN+I+ LAE S ++PYRDS++T
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-----YVPYRDSKMT 283
Query: 393 FLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVN 441
+LQ+SLGGN + ++ SP+ +SET STL F QRAK IKN VN
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 208/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQK-------------VADDSLSINGHTFTFDSVADME 143
++V+VR+RP N E + IV+ +AD S + T+TFD V
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 75
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N+++FAYGQTG+GKT+TM G + E D G+
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 136 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 188
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 189 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 247
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 304
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 305 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 438 AVVNE 442
VN+
Sbjct: 363 PEVNQ 367
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 199/343 (58%), Gaps = 23/343 (6%)
Query: 94 VSDSGVKVIVRMRPLNKEE-NEGEMIVQKV-ADDSLSINGHTFTFDSVADMEATQLDVFQ 151
+++ +KV+ R RPLN+ E N G+ + K +D++ I + FD V +Q V+
Sbjct: 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYN 63
Query: 152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLF 211
+V++ L G+N ++FAYGQT SGKT+TM G + + G+ PR+ + +F
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH-------DPEGMGIIPRIVQDIF 116
Query: 212 SRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEE 271
+ I D+ L + + S+ EIY ++I DLLD S+ NL + ED YV+ TE
Sbjct: 117 N-----YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 272 YVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRI 331
+VC+ +V + +G SNR T++N SSRSHS+F V K + + S ++
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV----KQENTQTEQKLSGKL 227
Query: 332 NLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRL 391
LVDLAGSE+ TGA G L EA NINKSLS LGN+I+ LAE S ++PYRDS++
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-----YVPYRDSKM 282
Query: 392 TFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434
T +LQ+SLGGN + ++ SP+ +SET STL F QRAK I
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 205/365 (56%), Gaps = 33/365 (9%)
Query: 95 SDSGVKVIVRMRPLNKEE------------NEGEMIVQKVADDSLSINGHTFTFDSVADM 142
S+ ++V VR+RPLN E E++ + D L+ FTFD
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLT---KKFTFDRSFGP 77
Query: 143 EATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQ-G 201
E+ Q DV+ +V PL+E L+G+N +VFAYGQTG+GKT+TM G A L+ + D G
Sbjct: 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIG 137
Query: 202 LTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRN-LQIREDV- 259
+ PR LF + +++ Y R S+LE+YNE++ DLL ++I +D
Sbjct: 138 IIPRALSHLFDELRMMEVE-------YTMRISYLELYNEELCDLLSTDDTTKIRIFDDST 190
Query: 260 -KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKS 318
K V ++ L E V + DV +LL KG R+T T +NA+SSRSH+VF+ VV R ++
Sbjct: 191 KKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR-EN 249
Query: 319 KADGISRFKSSRINLVDLAGSERQKLTG-AAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+G K ++NLVDLAGSE G G R++E NIN+SL LG +I L +
Sbjct: 250 GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD--- 306
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT LLQESLGG K ++I ISP ET STL +A RAK I+NK
Sbjct: 307 --RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNK 364
Query: 438 AVVNE 442
VN+
Sbjct: 365 PEVNQ 369
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 75
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 136 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 188
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 189 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 247
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 304
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 305 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 438 AVVNE 442
VN+
Sbjct: 363 PEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 75
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 136 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 188
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 189 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 247
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 304
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 305 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 438 AVVNE 442
VN+
Sbjct: 363 PEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 74
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 134
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 135 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 187
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 188 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 246
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 247 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 303
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 304 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 361
Query: 438 AVVNE 442
VN+
Sbjct: 362 PEVNQ 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 75
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 136 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 188
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 189 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 247
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 304
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 305 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 438 AVVNE 442
VN+
Sbjct: 363 PEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 66
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 126
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 127 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 179
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 180 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 238
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 239 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 295
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 296 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 353
Query: 438 AVVNE 442
VN+
Sbjct: 354 PEVNQ 358
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 37/365 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 77
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 137
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 138 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 190
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 191 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 249
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 250 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 306
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 307 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 364
Query: 438 AVVNE 442
VN+
Sbjct: 365 PEVNQ 369
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 206/367 (56%), Gaps = 41/367 (11%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 75
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG---PANALLEENLSSDQQ 200
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G P E +
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVP--LA 133
Query: 201 GLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIRE 257
G+ PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +
Sbjct: 134 GIIPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
Query: 258 DV--KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
D K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + +
Sbjct: 187 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK 246
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
++ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 247 -ETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 376 SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I
Sbjct: 305 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 436 NKAVVNE 442
NK VN+
Sbjct: 361 NKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 203/360 (56%), Gaps = 37/360 (10%)
Query: 99 VKVIVRMRPLNKEENEGEM--IVQ-------------KVADDSLSINGHTFTFDSVADME 143
++V+VR RP N E + IV+ +AD S + T+TFD V
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS---SRKTYTFDMVFGAS 60
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQ-QGL 202
Q+DV++ V P+++ + G+N ++FAYGQTG+GKT+TM G + E D G+
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 120
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ---RNLQIREDV 259
PR ++F ++ D + + S LEIYNE++ DLL+PS LQ+ +D
Sbjct: 121 IPRTLHQIFEKL-------TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 173
Query: 260 --KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317
K GV ++ L E V +V Q+L KG + R T AT +NA SSRSHSVF+ + + +
Sbjct: 174 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK-E 232
Query: 318 SKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ 377
+ DG K ++NLVDLAGSE +GA +R +EAGNIN+SL LG +I L E
Sbjct: 233 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 289
Query: 378 TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437
+ H+PYR+S+LT +LQ+SLGG + ++I ISPA ET STL +A RAK I NK
Sbjct: 290 --RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 197/340 (57%), Gaps = 43/340 (12%)
Query: 133 TFTFD-------SVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185
+FTFD + + ATQ V+ +G +++ G+++ +FAYGQTGSGK+YTM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 186 PANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDL 245
+ DQ GL PR E LF RI Q + + ++Y + S+ E+YNE + DL
Sbjct: 157 ----------TPDQPGLIPRTCEDLFQRIASAQDETPN--ISYNVKVSYFEVYNEHVRDL 204
Query: 246 LDPSQRN-----LQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAE 300
L P N L++RE G YV++LTE V ++++ + + G +R +T +N
Sbjct: 205 LAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDT 264
Query: 301 SSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINK 360
SSRSH+VFT +++ + +SSRI LVDLAGSER K T A G+RL+E NINK
Sbjct: 265 SSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINK 324
Query: 361 SLSQLGNLINILAEVS----------QTGKQRH-------IPYRDSRLTFLLQESLGGNA 403
SL+ LG +I LA+ ++G+ R +PYRDS LT+LL++SLGGN+
Sbjct: 325 SLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNS 384
Query: 404 KLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443
K AMI ISP ET STLR+A +AK I+ +AVVN+V
Sbjct: 385 KTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 224 bits (571), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 204/353 (57%), Gaps = 24/353 (6%)
Query: 91 VPGVSDSGVKVIVRMRPL-NKEENEGEMIVQKVADD----SLSINGHTFTFDSVADMEAT 145
+PG ++ V+V +R+RPL KE G +V +L + H F F V +A
Sbjct: 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH-FGFHVVLAEDAG 63
Query: 146 QLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPR 205
Q V+Q PL+E GFN++VFAYGQTGSGKTYTM + A L E D+QG+ PR
Sbjct: 64 QEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE----DEQGIVPR 119
Query: 206 VFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD--PSQRNLQIREDVKSGV 263
F I+E + L+ S+LE+Y E+ DLL+ + R++Q+RED + V
Sbjct: 120 AMAEAFKLIDENDL------LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 264 YVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKA--- 320
+ + E V + +V LL G + R TGAT +N SSRSH+VFT +E R ++ +
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP 233
Query: 321 -DGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTG 379
+ S+ + VDLAGSER TG+ GERLKE+ IN SL LGN+I+ L + + G
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRG 293
Query: 380 KQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432
HIPYRDS++T +L++SLGGNAK MI +SP+ S ET +TL +A RA+
Sbjct: 294 S--HIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 210/355 (59%), Gaps = 49/355 (13%)
Query: 99 VKVIVRMRPLNKEEN---EGEMIVQKVADDSLSINGHTF--------TFDSVADMEATQL 147
++V R+RPLN++E+ E +M+ D ++ H + +D V DM A+Q
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLT---TVDEFTVE-HPWKDDKRKQHIYDRVFDMRASQD 70
Query: 148 DVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVF 207
D+F+ LV++ + G+N +FAYGQTGSGKT+T++G E N GLTPR
Sbjct: 71 DIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGH-----ESN-----PGLTPRAT 119
Query: 208 ERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS---QRNLQIREDVKSGVY 264
+ LF+ +K K+ ++ + +E+Y + + DLL P + L+I++D K V+
Sbjct: 120 KELFN-----ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVF 174
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVES---RCKSKAD 321
VEN+T + T++++ +L +G R T++N ESSRSH + + V+ES + +S A
Sbjct: 175 VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAAR 234
Query: 322 GISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQ 381
G +++ VDLAGSER K +G+AG +LKEA +INKSLS LG++I L+ +Q
Sbjct: 235 G-------KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ---- 283
Query: 382 RHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKN 436
HIPYR+ +LT L+ +SLGGNAK M +SPA+S ET+++L +A R + I N
Sbjct: 284 -HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 203/353 (57%), Gaps = 37/353 (10%)
Query: 95 SDSGVKVIVRMRPLNKEENEGEMIVQKVA----DDSLSINGH-----TFTFDSVADMEAT 145
S ++VI R+RP+ KE+ EG V DDS+ H +F D V +A+
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS 61
Query: 146 QLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPR 205
Q DVFQ V LV +C+ GFN +FAYGQTG+GKTYTM G A + G+ R
Sbjct: 62 QQDVFQEVQA-LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA----------ENPGINQR 110
Query: 206 VFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS-QRNLQIR--EDVKSG 262
+ LFS + E K +D + Y S EIYNE + DLL Q L+IR D
Sbjct: 111 ALQLLFSEVQE---KASDWE--YTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQ 165
Query: 263 VYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADG 322
+YV LTE V ++ D+ ++ G +NR T T++N SSRSH++ +V R + G
Sbjct: 166 LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALL--IVTVRGVDCSTG 223
Query: 323 ISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQR 382
+ + ++NLVDLAGSER +GA G RL+EA +INKSLS LG++I L +Q
Sbjct: 224 LR--TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS-----RQG 276
Query: 383 HIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
H+P+R+S+LT+LLQ+SL G++K M+ +SP + SET +L+FA+R ++++
Sbjct: 277 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 202/353 (57%), Gaps = 24/353 (6%)
Query: 91 VPGVSDSGVKVIVRMRPL-NKEENEGEMIVQKVADD----SLSINGHTFTFDSVADMEAT 145
+PG ++ V+V +R+RPL KE G +V +L + H F F V +A
Sbjct: 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH-FGFHVVLAEDAG 63
Query: 146 QLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPR 205
Q V+Q PL+E GFN++VFAYGQTGSGKTYTM + A L E D+QG+ PR
Sbjct: 64 QEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE----DEQGIVPR 119
Query: 206 VFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD--PSQRNLQIREDVKSGV 263
F I+E + L+ S+LE+Y E+ DLL+ + R++Q+RED + V
Sbjct: 120 AMAEAFKLIDENDL------LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 264 YVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKA--- 320
+ + E V + +V LL G + R TGAT +N SSRSH+VFT ++ R ++ +
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLP 233
Query: 321 -DGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTG 379
+ S+ + VDLAGSER TG+ GE KE+ IN SL LGN+I+ L + + G
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRG 293
Query: 380 KQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432
+IPYRDS++T +L++SLGGNAK MI +SP+ S ET +TL +A RA+
Sbjct: 294 S--NIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 211/379 (55%), Gaps = 42/379 (11%)
Query: 99 VKVIVRMRPL------NKEENE----GEMIVQKVADDSLSINGHTFTFDSVADMEATQLD 148
++V R+RPL KE N E V+ + D +D V D ATQ D
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD---KAKQHMYDRVFDGNATQDD 63
Query: 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFE 208
VF+ LV++ + G+N +FAYGQTGSGKT+T++G + GLTPR
Sbjct: 64 VFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYG----------ADSNPGLTPRAMS 112
Query: 209 RLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRN---LQIREDVKSGVYV 265
LF RI +K + ++ + +E+Y + + DLL P Q L I++D K V V
Sbjct: 113 ELF-RI----MKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSV 167
Query: 266 ENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISR 325
EN+T + T +++ ++ +G R T T +N +SSRSH + + ++ES + I+R
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIES-TNLQTQAIAR 226
Query: 326 FKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIP 385
+++ VDLAGSER K +G+AG +LKEA +INKSLS LG++I+ L+ +Q HIP
Sbjct: 227 ---GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ-----HIP 278
Query: 386 YRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ 445
YR+ +LT L+ +SLGGNAK M ISPA+S ET ++L +A R ++I N N V
Sbjct: 279 YRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN-VSS 337
Query: 446 DDVNYLREVIRQLRDELHR 464
+V L++++ +++ R
Sbjct: 338 KEVARLKKLVSYWKEQAGR 356
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 202/367 (55%), Gaps = 54/367 (14%)
Query: 99 VKVIVRMRPLN-KEENEGEMIVQKVADDSLSI-----------NGHT------------- 133
+KV+VR+RP N KE+ G V V D + + +G
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 134 --FTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALL 191
F FD+V D +TQ +VF+ P++ + L+G+N +V AYG TG+GKT+TM G
Sbjct: 72 LKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG------ 125
Query: 192 EENLSSDQQG---LTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDP 248
S+D+ G LT + I EE+I S+LE+YNEQI DLL
Sbjct: 126 ----SADEPGVMYLTMLHLYKCMDEIKEEKI--------CSTAVSYLEVYNEQIRDLLVN 173
Query: 249 SQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVF 308
S L +RED + GV V LT + +++ LL G NR T +NA SSRSH+VF
Sbjct: 174 SGP-LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232
Query: 309 TCVVESRCKSKADGISR-FKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGN 367
+ R + K I++ + ++++L+DLAGSER +GA G R E NIN+SL LGN
Sbjct: 233 QIYL--RQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGN 290
Query: 368 LINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRF 427
+IN LA+ + K +HIPYR+S+LT LL++SLGGN + MI A+SP+ +T++TL++
Sbjct: 291 VINALADSKR--KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKY 348
Query: 428 AQRAKAI 434
A RAK I
Sbjct: 349 ANRAKDI 355
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 206 bits (525), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 202/360 (56%), Gaps = 46/360 (12%)
Query: 99 VKVIVRMRP-LNKEENEGEMI-VQKVADDS----LSIN-GHT----FTFDSVADMEATQL 147
++V R+RP L E++ E I VQ DD+ ++IN G++ F FD + D + T
Sbjct: 30 IRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETND 89
Query: 148 DVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVF 207
++F+ VG L+++ L G+N +FAYGQTGSGKTYTM P + G+ P
Sbjct: 90 EIFKEVG-QLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD------------GIVPATI 136
Query: 208 ERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD---PSQRN--------LQIR 256
+FS I+ K A + +Y+ C F+EIYNE I DLL PSQ N +IR
Sbjct: 137 NHIFSWID----KLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIR 192
Query: 257 EDVK-SGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
D + Y+ N+T + + V ++L + R T +T+ N SSRSHS+F +E
Sbjct: 193 HDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEG- 251
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
K +G +NLVDLAGSER + GERL+E +INKSLS LG++I+ L
Sbjct: 252 ---KNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALN-- 306
Query: 376 SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
S G++RHIP+R+S+LT+LLQ SL G++K M ISPA +ET ++LRFA + K
Sbjct: 307 SPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 196/365 (53%), Gaps = 43/365 (11%)
Query: 99 VKVIVRMRP-LNKEEN----------EGEMIVQKVADDSLSINGH-TFTFDSVADMEATQ 146
++V R+RP L EEN E + +Q + + S G F+FD V ++Q
Sbjct: 69 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 128
Query: 147 LDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRV 206
D+F++V PL+++ L G+N +FAYGQTGSGKTYTM G ++ G+ PR
Sbjct: 129 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVIPRT 177
Query: 207 FERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIR--EDVKSGVY 264
+ LF I + + Y+ + +FLEIYNE + DLL Q++++IR ++ K+ +Y
Sbjct: 178 VDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 233
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324
V N+TEE V + L+ NR T +T+ N SSRSH+V + R K +
Sbjct: 234 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE--- 290
Query: 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHI 384
INLVDLAGSE K R+ E NIN+SLS+L N+I L + KQ HI
Sbjct: 291 -ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-----KQDHI 340
Query: 385 PYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK-NKAVVNEV 443
PYR+S+LT LL SLGGN+K M +SP Q C E+ +LRFA + K KA N
Sbjct: 341 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 400
Query: 444 MQDDV 448
+ + V
Sbjct: 401 LNNSV 405
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 196/365 (53%), Gaps = 43/365 (11%)
Query: 99 VKVIVRMRP-LNKEEN----------EGEMIVQKVADDSLSINGH-TFTFDSVADMEATQ 146
++V R+RP L EEN E + +Q + + S G F+FD V ++Q
Sbjct: 61 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 120
Query: 147 LDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRV 206
D+F++V PL+++ L G+N +FAYGQTGSGKTYTM G ++ G+ PR
Sbjct: 121 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVIPRT 169
Query: 207 FERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIR--EDVKSGVY 264
+ LF I + + Y+ + +FLEIYNE + DLL Q++++IR ++ K+ +Y
Sbjct: 170 VDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 225
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324
V N+TEE V + L+ NR T +T+ N SSRSH+V + R K +
Sbjct: 226 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE--- 282
Query: 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHI 384
INLVDLAGSE K R+ E NIN+SLS+L N+I L + KQ HI
Sbjct: 283 -ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-----KQDHI 332
Query: 385 PYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK-NKAVVNEV 443
PYR+S+LT LL SLGGN+K M +SP Q C E+ +LRFA + K KA N
Sbjct: 333 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 392
Query: 444 MQDDV 448
+ + V
Sbjct: 393 LNNSV 397
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 196/365 (53%), Gaps = 43/365 (11%)
Query: 99 VKVIVRMRP-LNKEEN----------EGEMIVQKVADDSLSINGH-TFTFDSVADMEATQ 146
++V R+RP L EEN E + +Q + + S G F+FD V ++Q
Sbjct: 55 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 114
Query: 147 LDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRV 206
D+F++V PL+++ L G+N +FAYGQTGSGKTYTM G ++ G+ PR
Sbjct: 115 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVIPRT 163
Query: 207 FERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIR--EDVKSGVY 264
+ LF I + + Y+ + +FLEIYNE + DLL Q++++IR ++ K+ +Y
Sbjct: 164 VDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 219
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324
V N+TEE V + L+ NR T +T+ N SSRSH+V + R K +
Sbjct: 220 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE--- 276
Query: 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHI 384
INLVDLAGSE K R+ E NIN+SLS+L N+I L + KQ HI
Sbjct: 277 -ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-----KQDHI 326
Query: 385 PYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK-NKAVVNEV 443
PYR+S+LT LL SLGGN+K M +SP Q C E+ +LRFA + K KA N
Sbjct: 327 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 386
Query: 444 MQDDV 448
+ + V
Sbjct: 387 LNNSV 391
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V +R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 61 IRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 120
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N ++FAYGQTGSGKT+TM P + G+ P
Sbjct: 121 TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD------------GIIP 167
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQ---------I 255
+F+ IN+ + K D Y+ F+EIYNE I DLL N + I
Sbjct: 168 STISHIFNWINKLKTKGWD----YKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSN-RRTGATSINAESSRSHSVFTCVVES 314
R D ++ +++ ++++K + R T +T+ N SSRSHS+F ++
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHL 281
Query: 315 RCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAE 374
+ G + + +NLVDLAGSER ++ G+RL+E NINKSLS LG++I+ L +
Sbjct: 282 SGSNAKTGAHSYGT--LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQ 339
Query: 375 VSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434
T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA + +
Sbjct: 340 PDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 397
Query: 435 K 435
+
Sbjct: 398 R 398
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 194/364 (53%), Gaps = 53/364 (14%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 16 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 75
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N +FAYGQTGSGKT+TM P + G+ P
Sbjct: 76 TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------------GIIP 122
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVY 264
+F+ IN+ + K D Y+ C F+EIYNE I DLL N +ED G+
Sbjct: 123 STISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGLK 175
Query: 265 VE----------NLTEEYVCTMKD---VTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
E +T C ++ V +L K R T +T+ N SSRSHS+F +
Sbjct: 176 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--I 233
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ + G + + +NLVDLAGSER ++ G+RL+E NINKSLS LG++I+
Sbjct: 234 IHLSGSNAKTGAHSYGT--LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 291
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA +
Sbjct: 292 LGQPDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
Query: 432 KAIK 435
+ +
Sbjct: 350 NSTR 353
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 194/364 (53%), Gaps = 53/364 (14%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 4 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 63
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N +FAYGQTGSGKT+TM P + G+ P
Sbjct: 64 TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------------GIIP 110
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVY 264
+F+ IN+ + K D Y+ C F+EIYNE I DLL N +ED G+
Sbjct: 111 STISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGLK 163
Query: 265 VE----------NLTEEYVCTMKD---VTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
E +T C ++ V +L K R T +T+ N SSRSHS+F +
Sbjct: 164 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--I 221
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ + G + + +NLVDLAGSER ++ G+RL+E NINKSLS LG++I+
Sbjct: 222 IHLSGSNAKTGAHSYGT--LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 279
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA +
Sbjct: 280 LGQPDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
Query: 432 KAIK 435
+ +
Sbjct: 338 NSTR 341
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 190/351 (54%), Gaps = 42/351 (11%)
Query: 99 VKVIVRMRP-LNKEEN----------EGEMIVQKVADDSLSINGH-TFTFDSVADMEATQ 146
++V R+RP L EEN E + +Q + + S G F+FD V ++Q
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 117
Query: 147 LDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRV 206
D+F++V PL+++ L G+N +FAYGQ+GSGKTYTM G ++ G+ PR
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESV----------GVIPRT 166
Query: 207 FERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIR--EDVKSGVY 264
+ LF I + + Y+ + +FLEIYNE + DLL Q++++IR ++ K+ +Y
Sbjct: 167 VDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 222
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324
V N+TEE V + L+ NR T +T+ N SSRSH+V + R K +
Sbjct: 223 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE--- 279
Query: 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHI 384
INLVDLAGSE K R+ E NIN+SLS+L N+I L + KQ HI
Sbjct: 280 -ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-----KQDHI 329
Query: 385 PYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
PYR+S+LT LL SLGGN+K M +SP Q C E+ +LRFA + K
Sbjct: 330 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 200 bits (508), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 195/365 (53%), Gaps = 43/365 (11%)
Query: 99 VKVIVRMRP-LNKEEN----------EGEMIVQKVADDSLSINGH-TFTFDSVADMEATQ 146
++V R+RP L EEN E + +Q + + S G F+FD V ++Q
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 117
Query: 147 LDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRV 206
D+F++V PL+++ L G+N +FAYGQTGSGKTYTM G ++ G+ PR
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVIPRT 166
Query: 207 FERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIR--EDVKSGVY 264
+ LF I + + Y+ + +FLEIYNE + DLL Q++++IR ++ K+ +Y
Sbjct: 167 VDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 222
Query: 265 VENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324
V N+TEE V + L+ NR T +T+ N SSRSH+V + R K +
Sbjct: 223 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE--- 279
Query: 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHI 384
INLVDLAGSE K R+ E NI +SLS+L N+I L + KQ HI
Sbjct: 280 -ISVGSINLVDLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQ-----KQDHI 329
Query: 385 PYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK-NKAVVNEV 443
PYR+S+LT LL SLGGN+K M +SP Q C E+ +LRFA + K KA N
Sbjct: 330 PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 389
Query: 444 MQDDV 448
+ + V
Sbjct: 390 LNNSV 394
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 193/364 (53%), Gaps = 53/364 (14%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N +FAYGQTGSGKT+TM P + G+ P
Sbjct: 65 TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------------GIIP 111
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVY 264
+F+ IN+ + K D Y+ C F+EIYNE I DLL N +ED G+
Sbjct: 112 STISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGLK 164
Query: 265 VE----------NLTEEYVCTMKD---VTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
E +T C ++ V +L K R T +T+ N SSRSHS+F +
Sbjct: 165 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--I 222
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ + G + + +NLVDLAGS R ++ G+RL+E NINKSLS LG++I+
Sbjct: 223 IHLSGSNAKTGAHSYGT--LNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHA 280
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA +
Sbjct: 281 LGQPDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
Query: 432 KAIK 435
+ +
Sbjct: 339 NSTR 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 193/364 (53%), Gaps = 53/364 (14%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N +FAYGQTGSGKT+TM P + G+ P
Sbjct: 65 TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------------GIIP 111
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVY 264
+F+ IN+ + K D Y+ C F+EIYNE I DLL N +ED G+
Sbjct: 112 STISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGLK 164
Query: 265 VE----------NLTEEYVCTMKD---VTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
E +T C ++ V +L K R T +T+ N SSRSHS+F +
Sbjct: 165 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--I 222
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ + G + + +NLVDLAGSER ++ G+RL+E NI KSLS LG++I+
Sbjct: 223 IHLSGSNAKTGAHSYGT--LNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHA 280
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA +
Sbjct: 281 LGQPDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
Query: 432 KAIK 435
+ +
Sbjct: 339 NSTR 342
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 193/364 (53%), Gaps = 53/364 (14%)
Query: 99 VKVIVRMRPL--NKEENEGEMIVQKVADDSLSING------------HTFTFDSVADMEA 144
++V R+RP N E ++ +I DD+ + H F FD + D +
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTP 204
T +DVF+ VG LV++ L G+N +FAYGQTGSGKT+TM P + G+ P
Sbjct: 65 TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------------GIIP 111
Query: 205 RVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVY 264
+F+ IN+ + K D Y+ C F+EIYNE I DLL N +ED G+
Sbjct: 112 STISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGLK 164
Query: 265 VE----------NLTEEYVCTMKD---VTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311
E +T C ++ V +L K R T +T+ N SS SHS+F +
Sbjct: 165 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIF--I 222
Query: 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
+ + G + + +NLVDLAGSER ++ G+RL+E NINKSLS LG++I+
Sbjct: 223 IHLSGSNAKTGAHSYGT--LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 280
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
L + T +RHIP+R+S+LT+LLQ SL G++K M ISP+ S +ET ++LRFA +
Sbjct: 281 LGQPDST--KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
Query: 432 KAIK 435
+ +
Sbjct: 339 NSTR 342
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 191/367 (52%), Gaps = 29/367 (7%)
Query: 88 ENLVPGVSDSGVKVIVRMRPL--NKEENEGEMIVQKVADDSLSINGH-------TFTFDS 138
ENL + V+V VR+RP V+ + SL I + FD+
Sbjct: 12 ENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDA 71
Query: 139 VADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSD 198
+TQ D++ P++ + L G N+SV AYG TG+GKT+TM G S +
Sbjct: 72 FYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----------SPE 121
Query: 199 QQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIRED 258
Q G+ PR L EE + L+ S+LEIY E++ DLLDP+ +L IRED
Sbjct: 122 QPGVIPRALMDLLQLTREEGAEGRPWALS--VTMSYLEIYQEKVLDLLDPASGDLVIRED 179
Query: 259 VKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKS 318
+ + + L+++ + + D + + NR GAT +N SSRSH+V V+ R +
Sbjct: 180 CRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL 239
Query: 319 KADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQT 378
R + ++ L+DLAGSE + TG G RLKE+G IN SL LG +++ L +
Sbjct: 240 AP---FRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ---- 292
Query: 379 GKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKA 438
G R +PYRDS+LT LLQ+SLGG+A +I I+P + +T S L FA R+K + N+
Sbjct: 293 GLPR-VPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRP 351
Query: 439 VVNEVMQ 445
NE +Q
Sbjct: 352 FTNESLQ 358
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 188/362 (51%), Gaps = 48/362 (13%)
Query: 99 VKVIVRMRP--LNKEENEGEMIVQKVAD----DSLSIN-------GHTFTFDSVADMEAT 145
++V R+RP LN+ ++ ++++K + SL+IN + F FD + + T
Sbjct: 7 IRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHT 66
Query: 146 QLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPR 205
++F+ + LV++ L G+N +FAYGQTGSGKTYTM + G+ P
Sbjct: 67 NKEIFEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD------------GMIPM 113
Query: 206 VFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD--PSQRNLQ--------- 254
+F + ++ NY+ C ++EIYNE I DLL S N+
Sbjct: 114 TLSHIF----KWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHD 169
Query: 255 IREDV-KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVE 313
IR D K G Y+ N+T + + V +L K R T AT N SSRSHSVF +
Sbjct: 170 IRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229
Query: 314 SRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILA 373
R + ++NLVDLAGSER + GERL+E NINKSLS LG++I L
Sbjct: 230 GRNLHTGET----SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL- 284
Query: 374 EVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKA 433
GK R+IP+R+S+LT+LLQ SL G++K M I P + SET ++LRFA + +
Sbjct: 285 NTPDAGK-RYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
Query: 434 IK 435
K
Sbjct: 344 TK 345
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 193/359 (53%), Gaps = 48/359 (13%)
Query: 99 VKVIVRMRPLNKEENEGEMIVQKVADDSLSINGH-----------------TFTFDSVAD 141
V VR++P ++ EMI + DD SI+ H +F D V
Sbjct: 26 VHAFVRVKP--TDDFAHEMI--RYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH 81
Query: 142 MEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQG 201
+A+Q V++ V +V L G+N ++ YGQTG+GKTYTM G EN +G
Sbjct: 82 -DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT-----ENYK--HRG 133
Query: 202 LTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD------PSQRNLQI 255
+ PR +++F R+ EE+ HA R S+LEIYNE + DLL PS + I
Sbjct: 134 ILPRALQQVF-RMIEERPTHA-----ITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTI 187
Query: 256 REDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
E+ + GV+++ L+ +D LL +G +NR + ++N SSRSH +FT +E+
Sbjct: 188 VENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246
Query: 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEV 375
++ ++ ++ +S+INLVDLAGSER +G+ G+ LKEA INKSLS L I L +
Sbjct: 247 SRTLSE--EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD- 303
Query: 376 SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434
K+ HIP+R +LT L++SLGGN + ++ I + ET S+LRFA R K +
Sbjct: 304 ---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 179/327 (54%), Gaps = 37/327 (11%)
Query: 111 EENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVF 170
+E++ E+++ + +++ S F FD + + E + VF+ + L++ L G N VF
Sbjct: 411 DESKQELVITRNINNNFS--NLRFLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVF 467
Query: 171 AYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQC 230
AYGQTGSGKT+TM P N G+ P +++F+ I E++K +K +Y
Sbjct: 468 AYGQTGSGKTFTMSHPTN------------GMIPLSLKKIFNDI--EELK--EKGWSYTV 511
Query: 231 RCSFLEIYNEQITDLL----DPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKG 286
R F+EIYNE I DLL DP+ + +D+ V N++ + + + +L +
Sbjct: 512 RGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQA 571
Query: 287 LSNRRTGATSINAESSRSHSVFTCVVE---SRCKSKADGISRFKSSRINLVDLAGSERQK 343
R T AT N SSRSHS+F ++ S K + G +NL+DLAGSER
Sbjct: 572 NKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYG-------TLNLIDLAGSERLN 624
Query: 344 LTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNA 403
+ A G+RLKE INKSLS LG++I+ L H+PYR+S+LT+LL+ SLGGN+
Sbjct: 625 NSRAEGDRLKETQAINKSLSCLGDVIHSL----NLKDGSHVPYRNSKLTYLLKHSLGGNS 680
Query: 404 KLAMICAISPAQSCKSETFSTLRFAQR 430
K M ISP +ET ++LRFA +
Sbjct: 681 KTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 165/312 (52%), Gaps = 35/312 (11%)
Query: 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALL 191
H F+FD V + Q +VF+ + + LV++ L G+ +FAYGQTGSGKT+TM
Sbjct: 83 HDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTM-------- 133
Query: 192 EENLSSDQQ--GLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS 249
E D Q GL PR LFS E + + Y S++EIYNE + DLL
Sbjct: 134 EGGPGGDPQLEGLIPRALRHLFSVAQE----LSGQGWTYSFVASYVEIYNETVRDLLATG 189
Query: 250 QRNLQIRE--DVKSGVYVENLT---EEYVCTM--KDVTQLLMKGLSNRRTGATSINAESS 302
R Q E ++G E LT YV K+V LL NR T+ N SS
Sbjct: 190 TRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249
Query: 303 RSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAG----ERLKEAGNI 358
RSHSVF + S+ G+ + ++LVDLAGSER A G ERL+E I
Sbjct: 250 RSHSVFQLQISGEHSSR--GLQ--CGAPLSLVDLAGSERLDPGLALGPGERERLRETQAI 305
Query: 359 NKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCK 418
N SLS LG +I L+ K+ H+PYR+S+LT+LLQ SLGG+AK+ M ISP +
Sbjct: 306 NSSLSTLGLVIMALSN-----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENV 360
Query: 419 SETFSTLRFAQR 430
SE+ ++LRFA +
Sbjct: 361 SESLNSLRFASK 372
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 168/346 (48%), Gaps = 34/346 (9%)
Query: 93 GVSDSGVKVIVRMRPLNKEENEGEMIVQKVA----DDSLSINGHTFTFDSVADMEATQLD 148
G S V++ VR P + E V + SL ++ + F FD +Q +
Sbjct: 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDE 77
Query: 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM-WGPANALLEENLSSDQQGLTPRVF 207
++Q + +PLV+ L GF + AYGQTG+GK+Y+M P +L E+L G+ PR
Sbjct: 78 MYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHL-----GILPRAL 132
Query: 208 ERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVEN 267
+F R+ Q + D Q SF+EIYNE+ DLL + + +
Sbjct: 133 GDIFERVTARQENNKDA---IQVYASFIEIYNEKPFDLLGSTPHMPMV------AARCQR 183
Query: 268 LTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFK 327
T + + D+ +L G NRR T++N+ SSRSH++ T V+S+
Sbjct: 184 CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT----------H 233
Query: 328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYR 387
SR+N+VDLAGSE + TG G +E NIN L + ++ +S IPYR
Sbjct: 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV-----MSMAAGHTVIPYR 288
Query: 388 DSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKA 433
DS LT +LQ SL + L + ISP Q SET STLRF AKA
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 169/348 (48%), Gaps = 34/348 (9%)
Query: 93 GVSDSGVKVIVRMRPLNKEENEGEMIVQKVA----DDSLSINGHTFTFDSVADMEATQLD 148
G S V++ VR P + E V + SL ++ + F FD +Q +
Sbjct: 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDE 77
Query: 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM-WGPANALLEENLSSDQQGLTPRVF 207
++Q + +PLV+ L GF + AYGQTG+GK+Y+M P +L E+L G+ PR
Sbjct: 78 MYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHL-----GILPRAL 132
Query: 208 ERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVEN 267
+F R+ Q + D Q SF+EIYNE+ DLL + + +
Sbjct: 133 GDIFERVTARQENNKDA---IQVYASFIEIYNEKPFDLLGSTPHMPMV------AARCQR 183
Query: 268 LTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFK 327
T + + D+ +L G NRR T++N+ SSRSH++ T V+S+
Sbjct: 184 CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT----------H 233
Query: 328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYR 387
SR+N+VDLAGSE + TG G +E NIN L + ++ +S IPYR
Sbjct: 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV-----MSMAAGHTVIPYR 288
Query: 388 DSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIK 435
DS LT +LQ SL + L + ISP Q SET STLRF AK ++
Sbjct: 289 DSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 182/369 (49%), Gaps = 40/369 (10%)
Query: 83 MESFPENLVPGVSDSGVKVIVRMRPLNKEE-NEGEMIVQKVADDSL-------------- 127
ME P + + + + V VR RPLNK+E + E+ V V L
Sbjct: 57 MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 116
Query: 128 SINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPA 187
+ F FD D A+ V++ PLV+ G ++ FAYGQTGSGKT+TM G
Sbjct: 117 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD- 175
Query: 188 NALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD 247
L + +G+ +F N+ + ++ LN + +F EIYN ++ DLL+
Sbjct: 176 ---LSGKSQNASKGIYAMASRDVFLLKNQPRYRN----LNLEVYVTFFEIYNGKVFDLLN 228
Query: 248 PSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSV 307
+ L++ ED + V V L E V DV +++ G + R +G T N+ SSRSH+
Sbjct: 229 KKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHAC 287
Query: 308 FTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLK-EAGNINKSLSQLG 366
F ++ R K + G + +LVDLAG+ER T +A + + E INKSL L
Sbjct: 288 FQILL--RTKGRLHG-------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALK 338
Query: 367 NLINILAEVSQTGKQRHIPYRDSRLTFLLQES-LGGNAKLAMICAISPAQSCKSETFSTL 425
I L + + H P+R+S+LT +L++S +G N++ MI ISP S T +TL
Sbjct: 339 ECIRALGQ-----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTL 393
Query: 426 RFAQRAKAI 434
R+A R K +
Sbjct: 394 RYADRVKEL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 40/367 (10%)
Query: 83 MESFPENLVPGVSDSGVKVIVRMRPLNKEE-NEGEMIVQKVADDSL-------------- 127
+E P + + + + V VR RPLNK+E + E+ V + L
Sbjct: 37 LECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTK 96
Query: 128 SINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPA 187
+ F FD D A+ V++ PLV+ G ++ FAYGQTGSGKT+TM G
Sbjct: 97 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG-- 154
Query: 188 NALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD 247
+LS Q + ++ + + + ++L + +F EIYN ++ DLL+
Sbjct: 155 ------DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208
Query: 248 PSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSV 307
+ L++ ED K V V L E V + DV +++ G + R +G T N+ SSRSH+
Sbjct: 209 KKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHAC 267
Query: 308 FTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLK-EAGNINKSLSQLG 366
F ++ R K + G + +LVDLAG+ER T +A + + E INKSL L
Sbjct: 268 FQIIL--RAKGRMHG-------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALK 318
Query: 367 NLINILAEVSQTGKQRHIPYRDSRLTFLLQES-LGGNAKLAMICAISPAQSCKSETFSTL 425
I L + + H P+R+S+LT +L++S +G N++ MI ISP S T +TL
Sbjct: 319 ECIRALGQ-----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTL 373
Query: 426 RFAQRAK 432
R+A R K
Sbjct: 374 RYADRVK 380
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 182/355 (51%), Gaps = 44/355 (12%)
Query: 99 VKVIVRMRPLNKEENEGE------------MIV----QKVADDSLSINGHTFTFDSVADM 142
+ V VR RPLNK+E + + ++V QKV D + + TF FD D
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKV-DLTRYLENQTFRFDYAFDD 149
Query: 143 EATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGL 202
A V++ PLVE ++ FAYGQTGSGKT+TM G + S Q
Sbjct: 150 SAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGG--------DFSGKNQDC 201
Query: 203 TPRVFERLFSRINEEQIKHAD-KQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKS 261
+ ++ L +R +K + K+L Q +F EIY+ ++ DLL+ + L++ ED K
Sbjct: 202 SKGIYA-LAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQ 259
Query: 262 GVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKAD 321
V V L E V ++DV +L+ G S R +G TS NA SSRSH+VF ++ R K K
Sbjct: 260 QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL--RRKGKLH 317
Query: 322 GISRFKSSRINLVDLAGSERQKLTGAAGERLK-EAGNINKSLSQLGNLINILAEVSQTGK 380
G + +L+DLAG+ER T +A + + E INKSL L I L
Sbjct: 318 G-------KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR-----N 365
Query: 381 QRHIPYRDSRLTFLLQES-LGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434
+ H P+R S+LT +L++S +G N++ MI ISP + T +TLR+A R K +
Sbjct: 366 KPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 175/351 (49%), Gaps = 40/351 (11%)
Query: 99 VKVIVRMRPLNKEE-NEGEMIVQKVADDSL--------------SINGHTFTFDSVADME 143
+ V VR RPLNK+E + E+ V V L + F FD D
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 144 ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLT 203
A+ V++ PLV+ G ++ FAYGQTGSGKT+TM G L + +G+
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD----LSGKSQNASKGIY 116
Query: 204 PRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGV 263
+F N+ + ++ LN + +F EIYN ++ DLL+ + L++ ED + V
Sbjct: 117 AMASRDVFLLKNQPRYRN----LNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQV 171
Query: 264 YVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGI 323
V L E V DV +++ G + R +G T N+ SSRSH+ F ++ R K + G
Sbjct: 172 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RTKGRLHG- 228
Query: 324 SRFKSSRINLVDLAGSERQKLTGAAGERLK-EAGNINKSLSQLGNLINILAEVSQTGKQR 382
+ +LVDLAG+ER T +A + + E INKSL L I L + +
Sbjct: 229 ------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ-----NKA 277
Query: 383 HIPYRDSRLTFLLQES-LGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432
H P+R+S+LT +L++S +G N++ MI ISP S T +TLR+A R K
Sbjct: 278 HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 19/250 (7%)
Query: 95 SDSGVKVIVRMRPLNKEEN-EGEMIVQKVADDSLSI--NGHTFTFDSVADMEATQLDVFQ 151
++ +KV+ R RPLN+ E G+ + K + + G + FD V TQ V+
Sbjct: 4 AECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYN 63
Query: 152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLF 211
+V++ L G+N ++FAYGQT SGKT+TM G + G+ PR+ +F
Sbjct: 64 ACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH-------DPQLMGIIPRIAHDIF 116
Query: 212 SRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEE 271
+ I D+ L + + S+ EIY ++I DLLD S+ NL + ED YV+ TE
Sbjct: 117 -----DHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTER 171
Query: 272 YVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRI 331
+V + ++V ++ +G +NR T++N SSRSHS+F + K + + S ++
Sbjct: 172 FVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINI----KQENVETEKKLSGKL 227
Query: 332 NLVDLAGSER 341
LVDLAGSE+
Sbjct: 228 YLVDLAGSEK 237
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 129 bits (325), Expect = 9e-30, Method: Composition-based stats.
Identities = 113/351 (32%), Positives = 171/351 (48%), Gaps = 40/351 (11%)
Query: 99 VKVIVRMRPLN---KEENEGEMIVQK------------VADDSLSINGHTFTFDSVADME 143
+KV+VR RPL+ K++ + ++I K D + I H F D V D
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 144 ATQLDVFQLVGVPLVENCL-SGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGL 202
V++ PL+ + +G S FAYGQTGSGKTYTM G + SD G+
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS-----QPYGQSDTPGI 116
Query: 203 TPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSG 262
+F+ +N DK SF EIY ++ DLL ++ + E+ K
Sbjct: 117 FQYAAGDIFTFLNI-----YDKDNTKGIFISFYEIYCGKLYDLLQ-KRKMVAALENGKKE 170
Query: 263 VYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADG 322
V V++L V T +++ ++ G+ R+ G S N ESSRSH++ ++ K+ + G
Sbjct: 171 VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLG 230
Query: 323 ISRFKSSRINLVDLAGSERQKLTGAAGERLKEAG-NINKSLSQLGNLINILAEVSQTGKQ 381
+I +DLAGSER T + ++ + G NIN+SL L I + +
Sbjct: 231 -------KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-----DSDK 278
Query: 382 RHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432
HIP+RDS LT +L++ G +K MI ISP SC +T +TLR++ R K
Sbjct: 279 NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 355 AGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPA 414
A NINKSLS LGN+I+ LAE G + H+PYRDS++T +LQ+SL GN + ++ SP+
Sbjct: 1 AKNINKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPS 56
Query: 415 QSCKSETFSTLRFAQRAKAIKNKAVVN 441
++ET STL F QRAK IKN VN
Sbjct: 57 VFNEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 359 NKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCK 418
NKSLS LGN+I+ LAE G + H+PYRDS++T +LQ+SLGGN + ++ SP+ +
Sbjct: 1 NKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 419 SETFSTLRFAQRAKAIKNKAVVN 441
+ET STL F QRAK IKN VN
Sbjct: 57 AETKSTLMFGQRAKTIKNTVSVN 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,874,077
Number of Sequences: 62578
Number of extensions: 1209198
Number of successful extensions: 2771
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2430
Number of HSP's gapped (non-prelim): 86
length of query: 1345
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1234
effective length of database: 8,027,179
effective search space: 9905538886
effective search space used: 9905538886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)