Query 000699
Match_columns 1345
No_of_seqs 427 out of 2002
Neff 4.4
Searched_HMMs 46136
Date Mon Apr 1 22:17:22 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03188 kinesin-12 family pro 100.0 0E+00 0E+00 3198.2 106.8 1302 1-1345 1-1320(1320)
2 PF06548 Kinesin-related: Kine 100.0 2E-193 4E-198 1617.1 46.8 485 783-1284 1-488 (488)
3 KOG4280 Kinesin-like protein [ 100.0 6.9E-90 1.5E-94 812.1 26.3 355 95-468 3-371 (574)
4 KOG0245 Kinesin-like protein [ 100.0 2.2E-89 4.7E-94 820.4 23.1 357 96-470 3-378 (1221)
5 KOG0243 Kinesin-like protein [ 100.0 8.2E-88 1.8E-92 821.3 31.5 369 95-483 47-434 (1041)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 2.3E-81 5.1E-86 724.1 26.8 414 95-532 5-437 (607)
7 cd01373 KISc_KLP2_like Kinesin 100.0 6.6E-80 1.4E-84 700.5 36.0 331 98-434 2-337 (337)
8 KOG0241 Kinesin-like protein [ 100.0 1.5E-80 3.3E-85 729.9 25.6 410 95-533 2-435 (1714)
9 KOG0242 Kinesin-like protein [ 100.0 8.1E-80 1.7E-84 747.9 27.6 352 96-471 5-370 (675)
10 cd01370 KISc_KIP3_like Kinesin 100.0 5.2E-78 1.1E-82 685.2 34.2 319 98-434 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-76 2.5E-81 676.1 34.8 314 98-432 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.3E-76 5E-81 675.4 36.1 331 97-441 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.9E-75 1.3E-79 662.3 36.5 333 97-442 2-351 (352)
14 cd01367 KISc_KIF2_like Kinesin 100.0 4E-74 8.7E-79 649.3 31.4 305 98-432 2-322 (322)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.4E-73 3.1E-78 644.3 35.1 318 97-434 2-325 (325)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 1.6E-73 3.4E-78 646.9 35.0 319 98-434 2-333 (333)
17 cd01376 KISc_KID_like Kinesin 100.0 1.3E-73 2.9E-78 644.1 33.7 307 98-432 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2.3E-73 5E-78 646.0 35.4 327 98-435 2-341 (341)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 2.4E-73 5.1E-78 641.9 34.7 316 98-434 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-72 5.2E-77 637.7 34.6 313 98-432 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.8E-70 3.9E-75 619.7 36.1 317 97-437 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.9E-69 4.2E-74 611.8 36.3 324 98-441 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 3.4E-70 7.3E-75 662.2 23.9 337 96-456 313-662 (670)
24 KOG0246 Kinesin-like protein [ 100.0 2.2E-69 4.9E-74 622.4 28.0 332 87-439 198-546 (676)
25 cd00106 KISc Kinesin motor dom 100.0 3.9E-68 8.5E-73 598.6 35.4 316 98-432 1-328 (328)
26 PF00225 Kinesin: Kinesin moto 100.0 8.7E-69 1.9E-73 605.5 24.3 317 104-434 1-335 (335)
27 KOG0247 Kinesin-like protein [ 100.0 1.2E-66 2.7E-71 613.2 23.2 333 96-442 30-444 (809)
28 KOG0244 Kinesin-like protein [ 100.0 8.2E-67 1.8E-71 629.5 7.3 343 105-466 1-350 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 5.6E-61 1.2E-65 577.2 26.8 343 96-465 21-369 (568)
30 cd01363 Motor_domain Myosin an 100.0 8.9E-49 1.9E-53 411.4 17.7 179 149-413 8-186 (186)
31 PF12711 Kinesin-relat_1: Kine 99.8 5.3E-21 1.2E-25 179.2 7.7 86 943-1028 1-86 (86)
32 PLN03188 kinesin-12 family pro 99.2 2.2E-09 4.8E-14 136.5 24.7 245 931-1267 986-1252(1320)
33 COG5059 KIP1 Kinesin-like prot 98.0 6.1E-08 1.3E-12 119.1 -11.4 247 95-372 303-565 (568)
34 PRK02224 chromosome segregatio 97.1 2 4.3E-05 56.4 38.6 72 1095-1173 374-445 (880)
35 COG1196 Smc Chromosome segrega 97.0 1.9 4E-05 58.7 37.9 82 1075-1157 276-357 (1163)
36 PRK04863 mukB cell division pr 96.8 0.71 1.5E-05 63.7 31.5 190 1076-1268 389-603 (1486)
37 TIGR02169 SMC_prok_A chromosom 96.7 3.4 7.4E-05 55.1 35.6 35 1231-1265 463-497 (1164)
38 PF12128 DUF3584: Protein of u 96.2 1.6 3.4E-05 59.5 28.6 245 996-1273 242-512 (1201)
39 KOG4673 Transcription factor T 95.8 8.5 0.00018 49.0 34.5 143 1120-1271 588-766 (961)
40 PF07888 CALCOCO1: Calcium bin 95.6 3.8 8.3E-05 51.3 26.0 95 1076-1170 142-236 (546)
41 TIGR02168 SMC_prok_B chromosom 95.6 13 0.00028 49.7 34.3 16 168-183 25-40 (1179)
42 COG1196 Smc Chromosome segrega 95.5 12 0.00026 51.2 32.5 76 1141-1222 773-851 (1163)
43 KOG0977 Nuclear envelope prote 95.3 12 0.00025 47.2 29.6 126 1144-1269 201-342 (546)
44 TIGR02169 SMC_prok_A chromosom 95.2 17 0.00037 48.7 39.4 25 1242-1266 467-491 (1164)
45 KOG0161 Myosin class II heavy 95.2 25 0.00054 50.2 39.2 179 1133-1322 1189-1370(1930)
46 KOG0161 Myosin class II heavy 94.9 16 0.00034 52.1 30.8 143 1106-1260 947-1099(1930)
47 PRK02224 chromosome segregatio 94.5 24 0.00051 46.6 39.9 15 169-183 26-40 (880)
48 TIGR00606 rad50 rad50. This fa 93.7 43 0.00092 46.7 36.8 82 1077-1161 881-962 (1311)
49 PHA02562 46 endonuclease subun 93.6 13 0.00027 46.3 24.2 66 1201-1266 332-401 (562)
50 PF00038 Filament: Intermediat 93.5 18 0.00039 41.8 31.6 129 1143-1278 172-306 (312)
51 PF12128 DUF3584: Protein of u 93.2 49 0.0011 45.8 32.5 93 1232-1337 499-599 (1201)
52 TIGR02168 SMC_prok_B chromosom 92.3 53 0.0011 44.1 38.3 9 275-283 120-128 (1179)
53 PF09726 Macoilin: Transmembra 92.2 22 0.00048 46.3 23.8 185 1094-1285 428-661 (697)
54 KOG0976 Rho/Rac1-interacting s 91.8 54 0.0012 42.9 33.9 131 1142-1283 353-511 (1265)
55 PF07888 CALCOCO1: Calcium bin 91.6 48 0.001 42.1 35.1 64 1207-1270 393-457 (546)
56 PF05557 MAD: Mitotic checkpoi 91.6 1.1 2.4E-05 57.8 11.7 166 1094-1278 464-640 (722)
57 KOG0996 Structural maintenance 91.2 45 0.00097 45.3 24.8 188 1075-1269 313-532 (1293)
58 KOG4643 Uncharacterized coiled 91.1 69 0.0015 43.0 36.3 158 1116-1284 437-612 (1195)
59 COG0556 UvrB Helicase subunit 90.8 0.35 7.5E-06 59.7 5.8 98 132-243 3-101 (663)
60 KOG4674 Uncharacterized conser 90.6 1E+02 0.0022 44.1 34.0 299 914-1279 1185-1504(1822)
61 PRK06893 DNA replication initi 90.4 0.17 3.6E-06 56.1 2.5 48 132-185 11-58 (229)
62 KOG4302 Microtubule-associated 90.2 71 0.0015 41.5 26.9 41 1179-1221 452-492 (660)
63 TIGR00606 rad50 rad50. This fa 90.1 1E+02 0.0022 43.2 38.7 128 1134-1265 633-779 (1311)
64 PF00308 Bac_DnaA: Bacterial d 89.8 0.098 2.1E-06 57.7 0.0 51 132-185 3-53 (219)
65 KOG0946 ER-Golgi vesicle-tethe 89.5 79 0.0017 41.7 24.2 96 889-1030 622-717 (970)
66 TIGR02680 conserved hypothetic 89.3 43 0.00094 46.9 24.1 24 381-404 194-219 (1353)
67 PF05622 HOOK: HOOK protein; 89.3 0.11 2.4E-06 66.6 0.0 108 1096-1215 361-475 (713)
68 PRK09039 hypothetical protein; 89.1 39 0.00085 40.4 20.7 138 1124-1278 65-207 (343)
69 KOG0996 Structural maintenance 89.1 1.1E+02 0.0023 42.1 28.4 54 1073-1129 415-468 (1293)
70 COG2805 PilT Tfp pilus assembl 88.4 0.23 4.9E-06 57.9 1.7 31 154-184 113-143 (353)
71 KOG0982 Centrosomal protein Nu 88.2 21 0.00046 43.6 17.4 132 963-1130 247-381 (502)
72 PF00261 Tropomyosin: Tropomyo 87.8 54 0.0012 37.1 24.5 55 1226-1280 179-233 (237)
73 KOG0612 Rho-associated, coiled 87.6 1.3E+02 0.0029 41.4 29.6 22 163-184 85-106 (1317)
74 PF14662 CCDC155: Coiled-coil 87.2 21 0.00045 39.7 15.4 79 1179-1278 58-139 (193)
75 KOG0977 Nuclear envelope prote 86.6 25 0.00053 44.5 17.5 132 1116-1261 39-179 (546)
76 PF00038 Filament: Intermediat 86.6 69 0.0015 37.1 28.0 97 1182-1278 163-264 (312)
77 cd07653 F-BAR_CIP4-like The F- 86.3 53 0.0011 36.9 18.7 143 1134-1278 23-195 (251)
78 PRK11637 AmiB activator; Provi 86.1 72 0.0016 39.0 21.0 69 1094-1169 43-111 (428)
79 KOG0980 Actin-binding protein 85.9 93 0.002 41.4 22.1 27 1133-1159 424-450 (980)
80 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.9 22 0.00047 36.8 14.2 112 1122-1263 20-131 (132)
81 KOG0933 Structural maintenance 85.9 1.5E+02 0.0032 40.2 29.4 67 1202-1268 423-496 (1174)
82 PF08317 Spc7: Spc7 kinetochor 85.3 22 0.00048 42.0 15.7 156 1090-1275 144-300 (325)
83 PRK06620 hypothetical protein; 85.1 0.31 6.7E-06 53.8 0.5 51 131-185 10-63 (214)
84 PRK09087 hypothetical protein; 84.8 0.46 1E-05 52.9 1.6 48 132-185 16-63 (226)
85 PRK12377 putative replication 84.7 0.51 1.1E-05 53.6 1.9 51 133-185 70-120 (248)
86 PRK05642 DNA replication initi 84.5 0.57 1.2E-05 52.2 2.2 47 132-185 14-64 (234)
87 PF11559 ADIP: Afadin- and alp 84.4 23 0.0005 37.1 13.8 93 1181-1280 52-151 (151)
88 PRK03918 chromosome segregatio 83.8 1.6E+02 0.0035 39.0 36.9 14 170-183 27-40 (880)
89 KOG0612 Rho-associated, coiled 83.7 2E+02 0.0043 39.8 24.5 46 1229-1274 632-679 (1317)
90 PHA02562 46 endonuclease subun 83.4 1.1E+02 0.0024 38.2 21.4 17 1265-1281 423-440 (562)
91 PRK00411 cdc6 cell division co 83.4 0.8 1.7E-05 54.0 2.9 51 132-183 21-72 (394)
92 PRK14088 dnaA chromosomal repl 83.4 0.57 1.2E-05 57.1 1.8 51 131-185 99-149 (440)
93 PRK08084 DNA replication initi 83.4 0.64 1.4E-05 51.8 2.0 48 132-185 17-64 (235)
94 PRK14086 dnaA chromosomal repl 83.3 0.48 1E-05 59.9 1.1 51 132-185 283-333 (617)
95 PRK06526 transposase; Provisio 83.2 0.54 1.2E-05 53.4 1.4 41 140-185 77-117 (254)
96 COG2804 PulE Type II secretory 83.0 0.53 1.1E-05 58.0 1.2 30 156-185 248-277 (500)
97 TIGR02928 orc1/cdc6 family rep 82.7 0.71 1.5E-05 53.8 2.1 49 134-183 8-57 (365)
98 PRK01156 chromosome segregatio 82.3 1.9E+02 0.0041 38.6 31.0 42 1129-1170 656-697 (895)
99 PRK08116 hypothetical protein; 82.2 0.74 1.6E-05 52.6 1.9 52 132-185 80-133 (268)
100 PRK14087 dnaA chromosomal repl 82.0 0.7 1.5E-05 56.6 1.8 50 133-185 111-160 (450)
101 PF04851 ResIII: Type III rest 82.0 0.65 1.4E-05 47.5 1.3 21 165-185 24-44 (184)
102 PF09730 BicD: Microtubule-ass 81.9 1.9E+02 0.004 38.3 31.0 79 1182-1260 367-463 (717)
103 TIGR00362 DnaA chromosomal rep 81.2 0.76 1.7E-05 54.9 1.7 52 131-185 104-155 (405)
104 PRK06569 F0F1 ATP synthase sub 80.8 40 0.00086 36.4 13.9 99 1152-1279 39-138 (155)
105 PRK07952 DNA replication prote 80.7 0.92 2E-05 51.4 2.0 52 132-185 67-118 (244)
106 TIGR03185 DNA_S_dndD DNA sulfu 80.3 1.9E+02 0.0042 37.4 24.6 30 1145-1174 389-418 (650)
107 PF13514 AAA_27: AAA domain 79.8 2.6E+02 0.0056 38.6 29.7 40 1072-1115 288-327 (1111)
108 PF05557 MAD: Mitotic checkpoi 79.7 0.56 1.2E-05 60.4 -0.1 240 991-1294 262-544 (722)
109 PF10211 Ax_dynein_light: Axon 79.6 51 0.0011 36.4 14.7 110 1082-1217 79-188 (189)
110 PRK00149 dnaA chromosomal repl 79.5 0.91 2E-05 55.2 1.6 51 132-185 117-167 (450)
111 cd00009 AAA The AAA+ (ATPases 79.4 1.1 2.3E-05 43.3 1.7 19 165-183 18-36 (151)
112 PF12718 Tropomyosin_1: Tropom 79.4 91 0.002 33.1 16.5 136 1095-1268 4-139 (143)
113 KOG0995 Centromere-associated 79.4 2E+02 0.0042 37.0 32.2 241 960-1278 260-512 (581)
114 COG0419 SbcC ATPase involved i 79.1 2.5E+02 0.0053 38.0 39.2 34 1189-1222 482-517 (908)
115 TIGR03420 DnaA_homol_Hda DnaA 79.0 1.1 2.3E-05 48.5 1.8 48 132-185 10-57 (226)
116 KOG0982 Centrosomal protein Nu 78.4 1.8E+02 0.0039 36.2 19.5 92 913-1030 293-385 (502)
117 KOG0994 Extracellular matrix g 78.4 2.9E+02 0.0062 38.3 32.3 160 1090-1271 1541-1717(1758)
118 PRK08939 primosomal protein Dn 77.8 1 2.3E-05 52.5 1.4 51 134-185 124-175 (306)
119 cd00046 DEXDc DEAD-like helica 77.8 0.78 1.7E-05 43.7 0.3 18 169-186 3-20 (144)
120 PF15070 GOLGA2L5: Putative go 77.7 2.3E+02 0.005 36.9 26.4 18 1156-1173 141-158 (617)
121 cd07673 F-BAR_FCHO2 The F-BAR 77.4 85 0.0019 36.4 16.4 63 1142-1206 38-113 (269)
122 PF13851 GAS: Growth-arrest sp 77.2 1.2E+02 0.0026 33.9 16.8 132 1132-1276 4-139 (201)
123 PRK04778 septation ring format 76.7 2.3E+02 0.0049 36.3 35.1 39 1135-1173 378-416 (569)
124 cd00632 Prefoldin_beta Prefold 76.6 53 0.0011 32.6 12.7 91 1138-1268 4-94 (105)
125 PRK08727 hypothetical protein; 76.6 1.4 3E-05 49.1 1.8 46 132-185 14-60 (233)
126 PRK08903 DnaA regulatory inact 76.2 2 4.3E-05 47.0 2.9 49 132-185 13-61 (227)
127 PRK03918 chromosome segregatio 76.1 2.7E+02 0.0059 36.9 38.0 11 1159-1169 417-427 (880)
128 PF09731 Mitofilin: Mitochondr 75.4 1E+02 0.0022 39.1 17.8 93 1098-1225 251-345 (582)
129 cd07674 F-BAR_FCHO1 The F-BAR 75.2 94 0.002 35.7 15.9 132 1114-1269 14-161 (261)
130 TIGR03185 DNA_S_dndD DNA sulfu 74.7 2.7E+02 0.0058 36.1 33.5 68 1199-1266 391-464 (650)
131 PF01576 Myosin_tail_1: Myosin 74.4 1 2.2E-05 59.4 0.0 121 1141-1288 420-545 (859)
132 COG1474 CDC6 Cdc6-related prot 74.1 1.9 4.2E-05 51.6 2.3 26 158-183 33-59 (366)
133 PRK08181 transposase; Validate 73.8 2.4 5.2E-05 48.8 2.8 21 163-185 105-125 (269)
134 TIGR02338 gimC_beta prefoldin, 73.3 64 0.0014 32.4 12.4 101 1138-1278 8-108 (110)
135 PF09755 DUF2046: Uncharacteri 73.1 2.1E+02 0.0046 34.2 20.4 154 1076-1265 23-192 (310)
136 TIGR02538 type_IV_pilB type IV 73.1 1.6 3.4E-05 55.0 1.3 29 157-185 307-335 (564)
137 PF04108 APG17: Autophagy prot 72.9 2.4E+02 0.0052 34.8 22.2 87 1107-1208 303-394 (412)
138 COG0593 DnaA ATPase involved i 72.4 1.8 3.9E-05 52.6 1.5 52 131-185 81-132 (408)
139 COG1484 DnaC DNA replication p 72.4 2.5 5.3E-05 48.2 2.5 51 132-185 74-124 (254)
140 PF09787 Golgin_A5: Golgin sub 72.3 1.3E+02 0.0027 38.1 17.3 54 926-982 237-297 (511)
141 TIGR02680 conserved hypothetic 72.2 4.4E+02 0.0095 37.5 29.4 68 1111-1178 332-403 (1353)
142 smart00382 AAA ATPases associa 72.1 1.4 3.1E-05 41.7 0.4 19 167-185 3-21 (148)
143 PRK10436 hypothetical protein; 72.0 1.8 3.9E-05 53.4 1.4 29 157-185 209-237 (462)
144 TIGR02533 type_II_gspE general 71.9 1.9 4.1E-05 53.5 1.6 29 157-185 233-261 (486)
145 PF01935 DUF87: Domain of unkn 71.8 1.4 3E-05 48.3 0.3 17 168-184 25-41 (229)
146 PF00437 T2SE: Type II/IV secr 71.7 1.5 3.4E-05 49.2 0.7 19 166-184 127-145 (270)
147 PF10174 Cast: RIM-binding pro 71.3 3.6E+02 0.0078 36.1 30.2 32 1094-1126 517-548 (775)
148 KOG4643 Uncharacterized coiled 71.3 3.9E+02 0.0085 36.6 25.9 27 1187-1213 532-558 (1195)
149 PF13245 AAA_19: Part of AAA d 71.2 1.9 4.2E-05 40.5 1.1 27 158-185 3-29 (76)
150 PF05701 WEMBL: Weak chloropla 71.1 3E+02 0.0064 35.0 36.2 118 1144-1265 271-407 (522)
151 PF12846 AAA_10: AAA-like doma 71.1 1.5 3.2E-05 48.6 0.4 19 166-184 1-19 (304)
152 PF13401 AAA_22: AAA domain; P 70.8 1.3 2.8E-05 43.5 -0.1 18 166-183 4-21 (131)
153 smart00806 AIP3 Actin interact 70.8 2.7E+02 0.0058 34.7 18.8 77 1133-1210 203-279 (426)
154 PF00270 DEAD: DEAD/DEAH box h 70.8 2.1 4.5E-05 43.7 1.3 27 157-185 7-33 (169)
155 TIGR01420 pilT_fam pilus retra 70.5 2.1 4.5E-05 50.6 1.4 29 157-185 113-141 (343)
156 KOG0962 DNA repair protein RAD 70.0 4.7E+02 0.01 36.9 35.6 83 1095-1177 332-437 (1294)
157 TIGR02524 dot_icm_DotB Dot/Icm 69.3 2.5 5.3E-05 50.5 1.7 24 162-185 130-153 (358)
158 PF09787 Golgin_A5: Golgin sub 69.2 3.2E+02 0.0069 34.6 25.4 24 1188-1215 274-297 (511)
159 cd01131 PilT Pilus retraction 68.5 1.9 4E-05 46.9 0.5 18 167-184 2-19 (198)
160 PRK06835 DNA replication prote 68.5 2.8 6.2E-05 49.5 2.0 29 156-185 174-202 (329)
161 PF04012 PspA_IM30: PspA/IM30 68.4 1.2E+02 0.0025 33.7 14.3 43 1225-1267 86-128 (221)
162 PF09726 Macoilin: Transmembra 68.4 3.9E+02 0.0085 35.4 24.9 33 1242-1274 627-659 (697)
163 PRK11637 AmiB activator; Provi 68.0 3E+02 0.0064 33.8 27.3 9 1335-1343 354-362 (428)
164 TIGR02525 plasmid_TraJ plasmid 67.7 2.6 5.6E-05 50.7 1.4 20 165-184 148-167 (372)
165 KOG0979 Structural maintenance 67.4 4.7E+02 0.01 35.9 24.1 174 898-1131 183-358 (1072)
166 COG3599 DivIVA Cell division i 67.4 82 0.0018 35.7 12.8 39 994-1034 27-66 (212)
167 PF05103 DivIVA: DivIVA protei 67.3 4.5 9.7E-05 40.8 2.9 102 1165-1270 5-126 (131)
168 PF05667 DUF812: Protein of un 67.2 3.8E+02 0.0083 34.8 27.1 133 1075-1231 403-541 (594)
169 PF05667 DUF812: Protein of un 66.2 3.4E+02 0.0074 35.3 19.4 60 1094-1154 331-390 (594)
170 PTZ00112 origin recognition co 66.1 4.1 8.9E-05 53.8 2.8 20 164-183 779-798 (1164)
171 cd01129 PulE-GspE PulE/GspE Th 66.1 3.1 6.7E-05 47.6 1.6 28 158-185 72-99 (264)
172 KOG0978 E3 ubiquitin ligase in 65.8 4.3E+02 0.0094 35.0 25.5 114 1075-1195 529-642 (698)
173 PRK06921 hypothetical protein; 65.7 3.5 7.6E-05 47.2 1.9 30 156-185 104-136 (266)
174 TIGR01005 eps_transp_fam exopo 65.6 1.9E+02 0.0041 38.0 17.5 104 1138-1257 293-403 (754)
175 PF09730 BicD: Microtubule-ass 65.6 4.4E+02 0.0096 35.0 20.3 82 1068-1152 14-109 (717)
176 PF06785 UPF0242: Uncharacteri 65.3 31 0.00067 41.1 9.2 89 1195-1293 95-186 (401)
177 COG0419 SbcC ATPase involved i 65.2 4.8E+02 0.01 35.3 38.1 92 1081-1172 502-597 (908)
178 KOG1103 Predicted coiled-coil 64.5 3.3E+02 0.0071 33.1 19.4 133 1069-1218 138-285 (561)
179 PF13604 AAA_30: AAA domain; P 64.4 3.3 7.1E-05 45.1 1.3 28 157-184 9-36 (196)
180 PRK09183 transposase/IS protei 64.0 4.4 9.6E-05 46.2 2.3 18 168-185 104-121 (259)
181 KOG0989 Replication factor C, 64.0 4.3 9.3E-05 47.9 2.2 36 149-184 39-75 (346)
182 KOG1924 RhoA GTPase effector D 63.9 13 0.00029 48.0 6.4 16 1162-1177 1029-1044(1102)
183 KOG4807 F-actin binding protei 63.5 56 0.0012 39.7 10.9 60 973-1032 453-539 (593)
184 PF00015 MCPsignal: Methyl-acc 63.2 2.1E+02 0.0047 30.5 18.6 96 1124-1222 7-116 (213)
185 cd07647 F-BAR_PSTPIP The F-BAR 63.2 2.7E+02 0.0058 31.6 16.1 86 1138-1225 27-125 (239)
186 PRK10929 putative mechanosensi 63.1 4.7E+02 0.01 36.5 20.6 15 1230-1244 234-248 (1109)
187 PRK12422 chromosomal replicati 62.8 4.3 9.4E-05 49.8 2.1 52 131-185 105-160 (445)
188 PTZ00454 26S protease regulato 62.6 3.8 8.3E-05 49.6 1.6 52 132-183 140-196 (398)
189 TIGR03007 pepcterm_ChnLen poly 62.6 3.8E+02 0.0083 33.2 21.0 37 1136-1172 250-293 (498)
190 KOG0933 Structural maintenance 62.4 5.7E+02 0.012 35.2 29.9 25 1244-1268 913-937 (1174)
191 TIGR03015 pepcterm_ATPase puta 61.8 4.6 0.0001 44.9 1.9 23 162-184 39-61 (269)
192 PF06005 DUF904: Protein of un 61.4 61 0.0013 30.9 8.8 34 1138-1171 2-35 (72)
193 PF05010 TACC: Transforming ac 61.3 2.9E+02 0.0062 31.4 20.6 144 1087-1281 26-173 (207)
194 PHA03155 hypothetical protein; 61.0 18 0.00039 37.1 5.6 58 1184-1265 11-68 (115)
195 PF08317 Spc7: Spc7 kinetochor 60.9 3.5E+02 0.0076 32.2 20.9 54 1094-1150 78-138 (325)
196 KOG2856 Adaptor protein PACSIN 60.8 23 0.0005 42.6 7.3 99 1151-1277 108-210 (472)
197 PF13086 AAA_11: AAA domain; P 60.7 3.6 7.9E-05 43.6 0.9 18 168-185 19-36 (236)
198 PF01695 IstB_IS21: IstB-like 60.4 4.3 9.4E-05 43.7 1.4 19 167-185 48-66 (178)
199 PF13166 AAA_13: AAA domain 60.3 4.9E+02 0.011 33.7 24.9 60 1229-1288 416-478 (712)
200 TIGR00634 recN DNA repair prot 60.3 97 0.0021 39.4 13.2 145 1135-1280 146-333 (563)
201 PF00004 AAA: ATPase family as 60.2 3.5 7.6E-05 40.2 0.6 15 169-183 1-15 (132)
202 PHA02544 44 clamp loader, smal 60.2 3.9 8.5E-05 46.9 1.0 23 163-185 39-62 (316)
203 COG5208 HAP5 CCAAT-binding fac 60.1 18 0.00039 40.5 5.9 70 1144-1225 103-175 (286)
204 COG5008 PilU Tfp pilus assembl 59.7 5.4 0.00012 46.3 2.0 35 150-184 110-145 (375)
205 PF15619 Lebercilin: Ciliary p 59.6 2.9E+02 0.0063 30.9 18.0 52 1095-1157 16-67 (194)
206 PRK09343 prefoldin subunit bet 59.1 1.9E+02 0.0041 29.9 12.7 103 1138-1280 12-114 (121)
207 PRK03992 proteasome-activating 59.0 2.7 5.9E-05 50.5 -0.5 51 133-183 127-182 (389)
208 PRK13894 conjugal transfer ATP 59.0 4.7 0.0001 47.5 1.4 28 156-184 139-166 (319)
209 smart00487 DEXDc DEAD-like hel 59.0 5.5 0.00012 40.5 1.7 26 159-185 18-43 (201)
210 PRK09039 hypothetical protein; 58.8 3.1E+02 0.0068 33.0 16.4 84 1075-1169 69-152 (343)
211 TIGR02782 TrbB_P P-type conjug 58.1 3.6 7.9E-05 47.9 0.3 28 156-184 123-150 (299)
212 PF06548 Kinesin-related: Kine 57.8 4.8E+02 0.01 32.9 19.1 158 1084-1265 303-480 (488)
213 PF00448 SRP54: SRP54-type pro 57.6 3.5 7.5E-05 45.2 0.0 17 168-184 3-19 (196)
214 PF01637 Arch_ATPase: Archaeal 57.4 4.3 9.3E-05 43.2 0.7 28 157-184 11-38 (234)
215 PF05970 PIF1: PIF1-like helic 57.4 5.1 0.00011 47.7 1.4 37 143-183 3-39 (364)
216 COG3096 MukB Uncharacterized p 57.3 2.8E+02 0.006 36.7 15.8 126 1119-1280 897-1041(1480)
217 smart00053 DYNc Dynamin, GTPas 57.2 18 0.0004 41.2 5.6 52 273-341 86-137 (240)
218 PF03915 AIP3: Actin interacti 56.4 4.3E+02 0.0094 33.0 17.2 121 1090-1212 150-277 (424)
219 PRK12402 replication factor C 56.0 6.3 0.00014 45.3 1.8 43 134-185 12-55 (337)
220 PF00580 UvrD-helicase: UvrD/R 56.0 4.6 0.0001 45.2 0.7 21 165-185 12-32 (315)
221 PF13479 AAA_24: AAA domain 56.0 4.4 9.5E-05 44.6 0.5 23 166-188 3-25 (213)
222 PF08580 KAR9: Yeast cortical 55.9 3.6E+02 0.0078 35.6 17.3 99 887-986 107-219 (683)
223 KOG0971 Microtubule-associated 55.8 7E+02 0.015 34.1 21.2 55 1200-1268 369-427 (1243)
224 TIGR01242 26Sp45 26S proteasom 55.0 2.8 6.1E-05 49.6 -1.3 52 133-184 118-174 (364)
225 PTZ00361 26 proteosome regulat 54.9 7.1 0.00015 48.0 2.1 50 134-183 180-234 (438)
226 TIGR00631 uvrb excinuclease AB 54.8 11 0.00024 48.6 3.8 93 134-243 2-98 (655)
227 KOG0239 Kinesin (KAR3 subfamil 54.6 2.6E+02 0.0056 36.8 15.7 72 1093-1195 184-255 (670)
228 PF13191 AAA_16: AAA ATPase do 54.6 4.3 9.2E-05 42.0 0.1 22 162-183 20-41 (185)
229 PF13207 AAA_17: AAA domain; P 54.0 4.7 0.0001 39.3 0.3 16 168-183 1-16 (121)
230 PF14915 CCDC144C: CCDC144C pr 53.6 4.7E+02 0.01 31.4 23.7 36 992-1032 69-104 (305)
231 PF09738 DUF2051: Double stran 53.6 66 0.0014 38.2 9.4 27 1004-1032 220-246 (302)
232 KOG0249 LAR-interacting protei 53.2 4.2E+02 0.0091 35.1 16.5 164 1070-1282 91-257 (916)
233 PLN00020 ribulose bisphosphate 52.9 8.5 0.00019 46.7 2.2 85 131-215 109-204 (413)
234 cd01130 VirB11-like_ATPase Typ 52.6 7.2 0.00016 41.9 1.4 28 156-184 16-43 (186)
235 PRK10869 recombination and rep 52.6 1.6E+02 0.0035 37.5 13.3 24 1257-1280 305-328 (553)
236 PF10481 CENP-F_N: Cenp-F N-te 52.4 90 0.002 36.6 9.9 54 1098-1154 102-176 (307)
237 PF01580 FtsK_SpoIIIE: FtsK/Sp 52.2 4.8 0.0001 43.4 0.1 18 168-185 40-57 (205)
238 cd07652 F-BAR_Rgd1 The F-BAR ( 52.1 4.1E+02 0.0089 30.3 17.9 64 1179-1259 81-147 (234)
239 KOG0980 Actin-binding protein 52.0 7.8E+02 0.017 33.5 23.8 91 1121-1221 426-523 (980)
240 KOG2115 Vacuolar sorting prote 51.9 1.3E+02 0.0028 40.3 12.2 74 1205-1285 274-353 (951)
241 PF06705 SF-assemblin: SF-asse 51.8 1.3E+02 0.0029 34.1 11.4 114 890-1029 101-214 (247)
242 PRK13833 conjugal transfer pro 51.6 7.3 0.00016 46.1 1.4 28 156-184 135-162 (323)
243 PRK12723 flagellar biosynthesi 50.9 10 0.00022 46.0 2.5 20 166-185 174-193 (388)
244 PRK13342 recombination factor 50.0 8.5 0.00018 46.6 1.6 39 145-184 16-54 (413)
245 PRK10246 exonuclease subunit S 49.9 8.9E+02 0.019 33.6 33.4 15 965-979 215-229 (1047)
246 PF03962 Mnd1: Mnd1 family; I 49.8 3.5E+02 0.0075 30.1 13.7 116 1143-1278 65-180 (188)
247 PTZ00208 65 kDa invariant surf 49.8 28 0.00061 42.4 5.8 58 1122-1188 269-328 (436)
248 PTZ00424 helicase 45; Provisio 49.5 7.8 0.00017 45.8 1.2 26 157-184 58-83 (401)
249 PHA00729 NTP-binding motif con 49.5 9.6 0.00021 43.2 1.9 31 155-185 6-36 (226)
250 PF05529 Bap31: B-cell recepto 49.4 58 0.0013 35.5 7.8 63 1204-1268 130-192 (192)
251 PF00910 RNA_helicase: RNA hel 48.5 5.7 0.00012 39.0 -0.1 15 169-183 1-15 (107)
252 PF15397 DUF4618: Domain of un 48.3 1.1E+02 0.0024 35.7 9.9 103 891-1031 117-219 (258)
253 PF10186 Atg14: UV radiation r 48.3 1.2E+02 0.0026 34.4 10.4 37 1200-1236 64-100 (302)
254 COG1842 PspA Phage shock prote 48.1 4.8E+02 0.01 29.9 17.0 40 1121-1160 33-72 (225)
255 PF13671 AAA_33: AAA domain; P 47.7 7.3 0.00016 38.9 0.6 15 169-183 2-16 (143)
256 TIGR00635 ruvB Holliday juncti 47.6 11 0.00025 42.9 2.1 42 142-184 5-48 (305)
257 cd00268 DEADc DEAD-box helicas 47.5 11 0.00023 40.2 1.8 24 158-183 30-53 (203)
258 PRK08476 F0F1 ATP synthase sub 47.0 3.7E+02 0.008 28.3 14.1 98 1152-1278 36-134 (141)
259 TIGR03499 FlhF flagellar biosy 46.9 7.1 0.00015 45.0 0.3 18 168-185 196-213 (282)
260 PRK13900 type IV secretion sys 46.9 9.4 0.0002 45.3 1.3 28 156-184 151-178 (332)
261 PF15619 Lebercilin: Ciliary p 46.8 1.4E+02 0.003 33.3 10.2 38 993-1030 96-136 (194)
262 PF02562 PhoH: PhoH-like prote 46.8 10 0.00022 42.3 1.6 21 165-185 18-38 (205)
263 PRK13851 type IV secretion sys 46.6 7.4 0.00016 46.4 0.5 28 157-185 154-181 (344)
264 PF07724 AAA_2: AAA domain (Cd 46.3 7.9 0.00017 41.6 0.6 17 167-183 4-20 (171)
265 PF09744 Jnk-SapK_ap_N: JNK_SA 46.3 2.1E+02 0.0046 31.1 11.1 77 1076-1160 67-144 (158)
266 PF07728 AAA_5: AAA domain (dy 46.2 6.8 0.00015 39.4 0.1 15 169-183 2-16 (139)
267 PF13238 AAA_18: AAA domain; P 46.1 8.1 0.00018 37.5 0.6 15 169-183 1-15 (129)
268 PF09728 Taxilin: Myosin-like 46.1 5.9E+02 0.013 30.4 22.6 159 1080-1263 96-256 (309)
269 PF10168 Nup88: Nuclear pore c 45.9 5.5E+02 0.012 34.2 16.8 37 1140-1177 593-629 (717)
270 COG4962 CpaF Flp pilus assembl 45.8 9.2 0.0002 45.8 1.1 27 156-183 164-190 (355)
271 PRK13764 ATPase; Provisional 45.6 9.7 0.00021 48.6 1.3 21 165-185 256-276 (602)
272 PRK10884 SH3 domain-containing 45.6 2.2E+02 0.0047 32.2 11.5 21 1197-1217 130-150 (206)
273 KOG4001 Axonemal dynein light 45.0 2.8E+02 0.0061 31.5 11.9 115 1075-1216 136-252 (259)
274 COG1223 Predicted ATPase (AAA+ 44.9 8.4 0.00018 44.8 0.5 18 166-183 151-168 (368)
275 PF03962 Mnd1: Mnd1 family; I 44.4 1.5E+02 0.0032 32.9 9.9 85 1191-1279 61-145 (188)
276 PHA03162 hypothetical protein; 44.4 70 0.0015 33.8 6.9 26 1182-1218 14-39 (135)
277 PF09789 DUF2353: Uncharacteri 44.4 3.9E+02 0.0084 32.3 13.8 149 913-1114 2-177 (319)
278 COG4372 Uncharacterized protei 44.3 7.2E+02 0.016 30.9 24.1 59 1096-1161 107-165 (499)
279 cd00890 Prefoldin Prefoldin is 44.2 1.1E+02 0.0023 30.8 8.2 120 1138-1276 4-126 (129)
280 PRK11776 ATP-dependent RNA hel 44.1 12 0.00026 45.6 1.7 24 158-183 35-58 (460)
281 PF13234 rRNA_proc-arch: rRNA- 44.1 33 0.00071 39.2 5.1 55 965-1030 213-267 (268)
282 cd07651 F-BAR_PombeCdc15_like 44.0 5.2E+02 0.011 29.2 17.3 87 1138-1226 27-127 (236)
283 TIGR03007 pepcterm_ChnLen poly 44.0 7.3E+02 0.016 30.9 19.8 71 1138-1208 202-274 (498)
284 PF08385 DHC_N1: Dynein heavy 43.9 7.5E+02 0.016 31.0 22.1 125 1095-1243 295-419 (579)
285 PRK09841 cryptic autophosphory 43.8 8.2E+02 0.018 32.4 18.0 148 922-1160 246-397 (726)
286 PRK01297 ATP-dependent RNA hel 43.6 28 0.0006 42.8 4.7 26 156-183 116-141 (475)
287 TIGR02977 phageshock_pspA phag 43.2 4.2E+02 0.0091 29.8 13.4 53 1120-1179 32-84 (219)
288 cd07654 F-BAR_FCHSD The F-BAR 43.0 6.1E+02 0.013 29.7 17.8 66 1182-1250 93-158 (264)
289 COG4026 Uncharacterized protei 43.0 2.5E+02 0.0053 32.3 11.2 126 1092-1266 74-206 (290)
290 KOG2606 OTU (ovarian tumor)-li 42.8 1.1E+02 0.0023 36.3 8.7 129 1150-1290 15-166 (302)
291 PF08826 DMPK_coil: DMPK coile 42.6 1.2E+02 0.0026 28.3 7.3 24 1241-1264 36-59 (61)
292 PF06637 PV-1: PV-1 protein (P 42.6 5.9E+02 0.013 31.5 14.8 29 1075-1103 265-297 (442)
293 PF12325 TMF_TATA_bd: TATA ele 42.5 3.7E+02 0.008 28.1 11.7 74 1177-1269 12-86 (120)
294 cd07656 F-BAR_srGAP The F-BAR 42.5 2.9E+02 0.0063 31.7 12.2 91 1181-1274 92-199 (241)
295 PF06818 Fez1: Fez1; InterPro 42.4 1.3E+02 0.0027 34.1 8.9 83 1187-1279 9-104 (202)
296 KOG0994 Extracellular matrix g 42.3 1.2E+03 0.026 32.9 31.2 54 1105-1158 1549-1605(1758)
297 TIGR02881 spore_V_K stage V sp 42.3 11 0.00023 42.7 0.8 19 167-185 43-61 (261)
298 CHL00081 chlI Mg-protoporyphyr 42.2 9.4 0.0002 45.8 0.4 46 132-185 12-57 (350)
299 PF00063 Myosin_head: Myosin h 42.1 12 0.00027 48.2 1.5 35 149-183 68-102 (689)
300 PF15035 Rootletin: Ciliary ro 42.1 5.1E+02 0.011 28.8 13.5 40 1071-1114 65-104 (182)
301 PF06414 Zeta_toxin: Zeta toxi 42.0 9.5 0.00021 41.3 0.4 19 166-184 15-33 (199)
302 PRK10536 hypothetical protein; 41.9 12 0.00026 43.3 1.2 42 133-184 51-92 (262)
303 PRK14722 flhF flagellar biosyn 41.7 9.9 0.00022 46.0 0.5 20 166-185 137-156 (374)
304 cd07657 F-BAR_Fes_Fer The F-BA 41.5 1.9E+02 0.0042 33.0 10.6 44 1182-1225 88-131 (237)
305 TIGR02977 phageshock_pspA phag 41.5 5.6E+02 0.012 28.8 14.2 59 1099-1164 93-151 (219)
306 PRK11192 ATP-dependent RNA hel 41.0 14 0.0003 44.6 1.5 25 157-183 31-55 (434)
307 PF07798 DUF1640: Protein of u 40.9 1.9E+02 0.0042 31.4 10.0 32 1248-1279 117-148 (177)
308 PF10212 TTKRSYEDQ: Predicted 40.9 1.7E+02 0.0038 37.1 10.7 80 1201-1280 415-498 (518)
309 PRK01156 chromosome segregatio 40.9 1.1E+03 0.023 31.9 31.3 16 168-183 25-40 (895)
310 KOG1924 RhoA GTPase effector D 40.6 76 0.0016 41.7 7.7 12 919-930 910-921 (1102)
311 KOG0651 26S proteasome regulat 40.4 29 0.00064 41.4 3.9 86 131-216 126-223 (388)
312 KOG0963 Transcription factor/C 40.4 9.9E+02 0.021 31.4 24.5 59 1218-1278 276-340 (629)
313 KOG0250 DNA repair protein RAD 40.3 1.2E+03 0.027 32.4 26.8 140 1107-1275 321-460 (1074)
314 COG3028 Uncharacterized protei 40.2 55 0.0012 36.0 5.6 64 1212-1275 29-117 (187)
315 PF13851 GAS: Growth-arrest sp 40.2 2.8E+02 0.0061 31.0 11.3 88 1180-1267 26-116 (201)
316 COG1419 FlhF Flagellar GTP-bin 40.1 16 0.00034 44.7 1.8 37 147-183 180-220 (407)
317 PRK09174 F0F1 ATP synthase sub 39.9 5.7E+02 0.012 28.8 13.6 96 1152-1279 82-177 (204)
318 TIGR01241 FtsH_fam ATP-depende 39.9 8.8 0.00019 47.5 -0.3 50 133-184 51-106 (495)
319 COG1222 RPT1 ATP-dependent 26S 39.8 25 0.00053 42.7 3.3 50 133-182 147-201 (406)
320 PF05496 RuvB_N: Holliday junc 39.8 26 0.00056 40.1 3.3 42 140-182 23-66 (233)
321 cd01123 Rad51_DMC1_radA Rad51_ 39.7 16 0.00035 40.0 1.7 31 153-183 3-36 (235)
322 PRK06067 flagellar accessory p 39.6 18 0.00039 40.0 2.0 31 153-183 9-42 (234)
323 TIGR02237 recomb_radB DNA repa 39.5 14 0.00031 39.8 1.2 26 159-184 2-30 (209)
324 PF06048 DUF927: Domain of unk 39.4 16 0.00035 42.2 1.7 33 151-184 179-211 (286)
325 PRK04837 ATP-dependent RNA hel 39.3 15 0.00032 44.4 1.4 25 157-183 38-62 (423)
326 PRK06547 hypothetical protein; 38.4 19 0.00041 38.8 1.9 26 158-183 7-32 (172)
327 PRK00409 recombination and DNA 38.4 5.5E+02 0.012 34.5 15.3 17 1249-1265 605-621 (782)
328 PF06309 Torsin: Torsin; Inte 38.3 22 0.00048 37.2 2.3 15 169-183 56-70 (127)
329 PF08614 ATG16: Autophagy prot 38.2 71 0.0015 35.1 6.3 29 1133-1161 17-45 (194)
330 KOG2543 Origin recognition com 37.9 12 0.00025 45.6 0.3 16 168-183 32-47 (438)
331 PRK13341 recombination factor 37.8 17 0.00036 47.6 1.7 23 163-185 49-71 (725)
332 PRK04328 hypothetical protein; 37.7 20 0.00044 40.5 2.1 28 154-181 8-38 (249)
333 PRK10884 SH3 domain-containing 37.6 1.6E+02 0.0036 33.1 9.0 28 1240-1267 128-155 (206)
334 TIGR00348 hsdR type I site-spe 37.5 16 0.00034 47.2 1.4 29 156-185 249-282 (667)
335 TIGR00293 prefoldin, archaeal 37.4 2.9E+02 0.0062 28.1 10.1 93 1138-1274 4-123 (126)
336 PRK11448 hsdR type I restricti 37.3 14 0.00031 50.4 1.0 34 151-185 419-452 (1123)
337 PRK00080 ruvB Holliday junctio 37.3 18 0.0004 42.2 1.8 18 167-184 52-69 (328)
338 PRK10590 ATP-dependent RNA hel 37.3 18 0.00039 44.2 1.8 25 157-183 31-55 (456)
339 KOG1029 Endocytic adaptor prot 37.1 1.2E+03 0.026 31.5 23.9 107 1144-1261 448-566 (1118)
340 cd01120 RecA-like_NTPases RecA 36.9 12 0.00027 37.2 0.3 17 169-185 2-18 (165)
341 PF12325 TMF_TATA_bd: TATA ele 36.8 2E+02 0.0042 30.0 8.7 90 1185-1274 27-119 (120)
342 PLN03025 replication factor C 36.8 18 0.0004 42.1 1.7 19 167-185 35-53 (319)
343 KOG2373 Predicted mitochondria 36.8 26 0.00055 42.3 2.8 29 156-185 261-292 (514)
344 PRK00440 rfc replication facto 36.7 19 0.00042 40.9 1.8 21 163-183 35-55 (319)
345 PF09727 CortBP2: Cortactin-bi 36.3 2.7E+02 0.0058 31.4 10.2 75 1134-1217 96-173 (192)
346 PF00769 ERM: Ezrin/radixin/mo 36.0 1.6E+02 0.0036 33.8 9.0 64 1198-1261 4-71 (246)
347 PF13514 AAA_27: AAA domain 36.0 1.4E+03 0.03 31.8 37.8 12 172-183 2-13 (1111)
348 PF03215 Rad17: Rad17 cell cyc 35.9 18 0.00038 45.6 1.4 28 156-183 33-62 (519)
349 COG2256 MGS1 ATPase related to 35.8 21 0.00045 43.7 1.9 37 145-182 28-64 (436)
350 PF02841 GBP_C: Guanylate-bind 35.6 7.9E+02 0.017 28.8 19.3 44 1109-1152 113-167 (297)
351 PF05729 NACHT: NACHT domain 35.6 14 0.00031 37.2 0.4 17 168-184 2-18 (166)
352 KOG0946 ER-Golgi vesicle-tethe 35.1 1.3E+03 0.029 31.3 26.3 69 959-1029 611-681 (970)
353 PF12775 AAA_7: P-loop contain 35.0 19 0.0004 41.6 1.3 27 157-184 25-51 (272)
354 PLN02939 transferase, transfer 34.9 8.7E+02 0.019 33.6 16.2 165 1090-1281 144-370 (977)
355 PRK09361 radB DNA repair and r 34.7 25 0.00055 38.5 2.2 32 153-184 7-41 (225)
356 cd01393 recA_like RecA is a b 34.7 21 0.00046 38.8 1.6 32 153-184 3-37 (226)
357 COG1219 ClpX ATP-dependent pro 34.3 17 0.00037 43.4 0.9 16 167-182 98-113 (408)
358 PF05622 HOOK: HOOK protein; 34.3 13 0.00029 48.2 0.0 34 1144-1177 499-532 (713)
359 PF10243 MIP-T3: Microtubule-b 34.2 13 0.00029 46.7 0.0 71 1009-1123 425-495 (539)
360 KOG0335 ATP-dependent RNA heli 34.2 14 0.00031 45.9 0.2 24 162-187 109-132 (482)
361 PF05917 DUF874: Helicobacter 34.1 76 0.0016 37.3 5.8 88 1072-1164 147-240 (398)
362 PRK05759 F0F1 ATP synthase sub 33.9 4.5E+02 0.0097 27.5 11.2 24 1152-1175 33-56 (156)
363 smart00242 MYSc Myosin. Large 33.7 25 0.00055 45.6 2.3 36 148-183 74-109 (677)
364 PF13166 AAA_13: AAA domain 33.5 1.2E+03 0.026 30.3 18.7 32 1201-1232 440-471 (712)
365 PF15070 GOLGA2L5: Putative go 33.4 1.2E+03 0.027 30.5 30.4 147 1080-1267 167-316 (617)
366 COG1201 Lhr Lhr-like helicases 33.3 24 0.00051 46.7 2.0 26 157-184 30-55 (814)
367 KOG3047 Predicted transcriptio 33.2 31 0.00068 36.2 2.4 39 943-1007 13-51 (157)
368 PF10174 Cast: RIM-binding pro 33.0 1.4E+03 0.03 31.0 32.8 65 1222-1286 540-607 (775)
369 TIGR01243 CDC48 AAA family ATP 33.0 14 0.00031 48.0 -0.1 51 133-183 174-229 (733)
370 PF13476 AAA_23: AAA domain; P 32.9 15 0.00033 38.3 0.1 17 167-183 20-36 (202)
371 KOG1363 Predicted regulator of 32.8 2E+02 0.0043 36.2 9.5 43 1127-1169 248-290 (460)
372 CHL00176 ftsH cell division pr 32.7 16 0.00034 47.1 0.3 17 167-183 217-233 (638)
373 PRK04195 replication factor C 32.6 17 0.00037 44.9 0.6 28 156-183 28-56 (482)
374 cd01126 TraG_VirD4 The TraG/Tr 32.5 23 0.00049 42.3 1.5 16 169-184 2-17 (384)
375 TIGR03513 GldL_gliding gliding 32.5 4.4E+02 0.0095 30.0 11.1 53 1208-1274 150-202 (202)
376 TIGR01618 phage_P_loop phage n 32.5 16 0.00035 41.2 0.3 21 166-186 12-32 (220)
377 TIGR02902 spore_lonB ATP-depen 32.4 23 0.00049 44.7 1.6 43 133-183 61-103 (531)
378 PRK10416 signal recognition pa 32.3 27 0.00059 41.3 2.1 18 167-184 115-132 (318)
379 PHA02244 ATPase-like protein 32.1 30 0.00065 42.1 2.4 34 149-184 104-137 (383)
380 PRK11331 5-methylcytosine-spec 32.1 20 0.00044 44.5 1.0 29 398-430 319-347 (459)
381 PRK11634 ATP-dependent RNA hel 32.1 22 0.00047 45.8 1.4 25 157-183 36-60 (629)
382 PF09057 Smac_DIABLO: Second M 31.9 8.6E+02 0.019 28.2 14.1 120 1127-1280 87-217 (234)
383 cd01394 radB RadB. The archaea 31.8 29 0.00063 37.8 2.1 31 154-184 4-37 (218)
384 PRK05703 flhF flagellar biosyn 31.7 17 0.00037 44.5 0.4 19 167-185 222-240 (424)
385 KOG3612 PHD Zn-finger protein 31.7 3.1E+02 0.0067 35.1 10.7 99 1149-1275 425-525 (588)
386 cd02021 GntK Gluconate kinase 31.6 18 0.00039 36.9 0.5 15 169-183 2-16 (150)
387 COG3599 DivIVA Cell division i 31.5 6.7E+02 0.015 28.6 12.5 55 1163-1221 8-66 (212)
388 PRK05580 primosome assembly pr 31.4 23 0.0005 45.9 1.5 39 139-184 142-180 (679)
389 PF12352 V-SNARE_C: Snare regi 31.4 3.1E+02 0.0066 24.8 8.2 65 1202-1266 1-65 (66)
390 KOG0340 ATP-dependent RNA heli 31.3 63 0.0014 39.3 4.7 54 156-215 36-92 (442)
391 PRK11281 hypothetical protein; 31.2 1.1E+03 0.023 33.3 16.5 185 1094-1283 39-255 (1113)
392 TIGR00614 recQ_fam ATP-depende 31.1 23 0.00049 43.6 1.3 26 156-183 18-43 (470)
393 PF02456 Adeno_IVa2: Adenoviru 31.1 19 0.00041 42.8 0.6 16 169-184 90-105 (369)
394 PRK04537 ATP-dependent RNA hel 31.1 22 0.00048 45.1 1.2 25 157-183 39-63 (572)
395 TIGR00376 DNA helicase, putati 31.1 23 0.0005 45.6 1.3 27 158-185 166-192 (637)
396 TIGR01359 UMP_CMP_kin_fam UMP- 30.9 21 0.00046 37.5 0.8 14 169-182 2-15 (183)
397 PF04849 HAP1_N: HAP1 N-termin 30.7 1E+03 0.022 28.7 24.1 26 916-941 61-86 (306)
398 PF05769 DUF837: Protein of un 30.5 7.9E+02 0.017 27.3 13.3 83 1118-1216 83-177 (181)
399 PF07693 KAP_NTPase: KAP famil 30.5 25 0.00054 40.3 1.4 20 164-183 18-37 (325)
400 TIGR02640 gas_vesic_GvpN gas v 30.4 31 0.00066 39.3 2.0 26 156-183 13-38 (262)
401 PF14662 CCDC155: Coiled-coil 30.3 3.8E+02 0.0083 30.2 10.1 66 1200-1265 37-109 (193)
402 PF06745 KaiC: KaiC; InterPro 30.3 30 0.00064 38.0 1.9 29 154-182 4-35 (226)
403 PF12709 Kinetocho_Slk19: Cent 30.2 3.3E+02 0.0071 27.2 8.5 69 1211-1279 2-84 (87)
404 PRK00131 aroK shikimate kinase 30.0 22 0.00048 36.5 0.8 17 167-183 5-21 (175)
405 PF04484 DUF566: Family of unk 29.9 8.7E+02 0.019 29.2 13.8 71 1088-1177 185-255 (311)
406 TIGR03689 pup_AAA proteasome A 29.8 16 0.00035 45.9 -0.3 16 168-183 218-233 (512)
407 cd01127 TrwB Bacterial conjuga 29.8 19 0.00041 43.7 0.3 19 166-184 42-60 (410)
408 cd01384 MYSc_type_XI Myosin mo 29.7 33 0.00072 44.6 2.4 21 163-183 85-105 (674)
409 PRK00771 signal recognition pa 29.7 40 0.00087 41.7 3.0 20 166-185 95-114 (437)
410 TIGR02788 VirB11 P-type DNA tr 29.5 28 0.00061 40.6 1.6 29 155-184 134-162 (308)
411 PRK11519 tyrosine kinase; Prov 29.2 1.5E+03 0.032 30.0 17.9 148 922-1160 246-397 (719)
412 COG1125 OpuBA ABC-type proline 29.0 21 0.00045 41.7 0.4 34 402-443 185-218 (309)
413 TIGR02903 spore_lon_C ATP-depe 29.0 29 0.00063 44.6 1.7 43 133-183 150-192 (615)
414 PRK13710 plasmid maintenance p 29.0 1.4E+02 0.0031 28.5 5.8 40 890-930 24-63 (72)
415 PF04568 IATP: Mitochondrial A 29.0 1.3E+02 0.0028 30.5 5.8 38 1243-1280 57-94 (100)
416 TIGR01817 nifA Nif-specific re 28.9 25 0.00055 43.9 1.2 46 132-183 191-236 (534)
417 cd00464 SK Shikimate kinase (S 28.9 24 0.00052 35.7 0.8 16 168-183 1-16 (154)
418 TIGR03752 conj_TIGR03752 integ 28.9 3.2E+02 0.007 34.5 10.3 44 1182-1225 60-106 (472)
419 PF04880 NUDE_C: NUDE protein, 28.9 79 0.0017 34.6 4.6 41 1143-1218 3-43 (166)
420 PF10789 Phage_RpbA: Phage RNA 28.9 83 0.0018 32.3 4.5 38 1119-1158 26-67 (108)
421 PRK06995 flhF flagellar biosyn 28.8 20 0.00044 44.8 0.3 19 167-185 257-275 (484)
422 PRK14974 cell division protein 28.8 36 0.00077 40.8 2.3 19 166-184 140-158 (336)
423 KOG0739 AAA+-type ATPase [Post 28.8 26 0.00057 41.5 1.2 80 137-216 133-223 (439)
424 cd01383 MYSc_type_VIII Myosin 28.7 39 0.00086 44.0 2.8 21 163-183 89-109 (677)
425 TIGR02746 TraC-F-type type-IV 28.7 21 0.00045 46.6 0.4 19 166-184 430-448 (797)
426 PRK07261 topology modulation p 28.7 24 0.00052 37.6 0.8 15 169-183 3-17 (171)
427 PF00735 Septin: Septin; Inte 28.5 21 0.00045 41.5 0.3 21 163-183 1-21 (281)
428 PF06248 Zw10: Centromere/kine 28.5 1E+03 0.022 30.7 15.0 106 1135-1264 31-142 (593)
429 cd01378 MYSc_type_I Myosin mot 28.4 37 0.0008 44.2 2.5 21 163-183 83-103 (674)
430 cd01387 MYSc_type_XV Myosin mo 28.4 38 0.00082 44.1 2.6 21 163-183 84-104 (677)
431 smart00763 AAA_PrkA PrkA AAA d 28.3 44 0.00096 40.5 3.0 71 133-211 45-141 (361)
432 cd01428 ADK Adenylate kinase ( 28.1 25 0.00054 37.1 0.8 15 169-183 2-16 (194)
433 cd00124 MYSc Myosin motor doma 28.0 38 0.00082 44.0 2.5 21 163-183 83-103 (679)
434 TIGR03881 KaiC_arch_4 KaiC dom 28.0 36 0.00078 37.4 2.0 31 154-184 5-38 (229)
435 PF13173 AAA_14: AAA domain 27.9 23 0.0005 35.6 0.5 17 168-184 4-20 (128)
436 PF07111 HCR: Alpha helical co 27.8 1.6E+03 0.035 30.0 20.8 178 1101-1291 59-240 (739)
437 cd01381 MYSc_type_VII Myosin m 27.7 41 0.00089 43.7 2.8 21 163-183 83-103 (671)
438 PRK13455 F0F1 ATP synthase sub 27.6 8.3E+02 0.018 26.6 12.5 53 1152-1221 56-108 (184)
439 CHL00181 cbbX CbbX; Provisiona 27.6 25 0.00055 40.8 0.8 15 169-183 62-76 (287)
440 cd01385 MYSc_type_IX Myosin mo 27.6 39 0.00085 44.1 2.5 21 163-183 91-111 (692)
441 COG0497 RecN ATPase involved i 27.6 7.3E+02 0.016 32.2 13.2 144 1135-1280 141-329 (557)
442 PF05837 CENP-H: Centromere pr 27.4 1.5E+02 0.0032 30.0 6.0 50 1147-1202 3-52 (106)
443 cd01382 MYSc_type_VI Myosin mo 27.4 37 0.0008 44.5 2.3 21 163-183 88-108 (717)
444 TIGR02880 cbbX_cfxQ probable R 27.4 23 0.0005 40.9 0.4 16 168-183 60-75 (284)
445 KOG3859 Septins (P-loop GTPase 27.4 28 0.00061 40.9 1.1 27 157-183 32-59 (406)
446 KOG0971 Microtubule-associated 27.3 1.8E+03 0.039 30.5 30.5 58 1092-1150 404-465 (1243)
447 PLN00206 DEAD-box ATP-dependen 27.1 32 0.0007 43.0 1.6 25 157-183 151-175 (518)
448 PRK11889 flhF flagellar biosyn 27.0 39 0.00085 41.7 2.2 18 167-184 242-259 (436)
449 KOG0250 DNA repair protein RAD 27.0 1.9E+03 0.042 30.7 24.8 171 1076-1266 260-430 (1074)
450 TIGR01313 therm_gnt_kin carboh 27.0 24 0.00052 36.6 0.4 14 169-182 1-14 (163)
451 PF13555 AAA_29: P-loop contai 26.9 23 0.00051 32.6 0.3 15 169-183 26-40 (62)
452 PF01496 V_ATPase_I: V-type AT 26.9 2.5E+02 0.0053 37.2 9.5 45 1234-1278 226-270 (759)
453 KOG2228 Origin recognition com 26.7 1.2E+02 0.0027 36.8 6.0 137 140-291 27-195 (408)
454 TIGR03819 heli_sec_ATPase heli 26.7 33 0.00071 41.0 1.5 28 156-184 169-196 (340)
455 cd01377 MYSc_type_II Myosin mo 26.6 41 0.00088 43.9 2.4 21 163-183 88-108 (693)
456 PRK13428 F0F1 ATP synthase sub 26.6 6.8E+02 0.015 31.3 12.7 52 1152-1220 30-81 (445)
457 TIGR00219 mreC rod shape-deter 26.4 1.6E+02 0.0034 34.6 6.9 30 1181-1218 56-85 (283)
458 PRK08233 hypothetical protein; 26.4 28 0.0006 36.3 0.8 15 169-183 6-20 (182)
459 cd07686 F-BAR_Fer The F-BAR (F 26.4 9.8E+02 0.021 27.7 12.9 65 1182-1249 88-153 (234)
460 PRK08118 topology modulation p 26.3 28 0.00061 37.1 0.8 13 169-181 4-16 (167)
461 KOG1803 DNA helicase [Replicat 26.3 31 0.00067 44.0 1.2 18 167-184 202-219 (649)
462 TIGR03744 traC_PFL_4706 conjug 26.2 24 0.00053 47.1 0.4 21 165-185 474-494 (893)
463 PRK10865 protein disaggregatio 26.1 41 0.00089 44.9 2.4 17 167-183 599-615 (857)
464 PRK10820 DNA-binding transcrip 26.0 31 0.00068 43.2 1.3 46 132-183 199-244 (520)
465 KOG0962 DNA repair protein RAD 25.9 2.2E+03 0.047 30.9 36.2 88 1207-1294 992-1085(1294)
466 PRK10917 ATP-dependent DNA hel 25.9 41 0.0009 43.6 2.3 41 141-185 261-301 (681)
467 TIGR02030 BchI-ChlI magnesium 25.8 34 0.00074 40.9 1.5 44 134-185 1-44 (337)
468 PF10236 DAP3: Mitochondrial r 25.8 32 0.00069 40.4 1.2 23 163-185 20-42 (309)
469 cd01850 CDC_Septin CDC/Septin. 25.8 26 0.00056 40.5 0.4 21 163-183 1-21 (276)
470 cd02020 CMPK Cytidine monophos 25.7 30 0.00064 34.6 0.8 15 169-183 2-16 (147)
471 PRK09270 nucleoside triphospha 25.6 45 0.00097 37.0 2.2 36 148-183 14-50 (229)
472 PRK15429 formate hydrogenlyase 25.6 34 0.00073 44.3 1.4 45 133-183 372-416 (686)
473 PRK10869 recombination and rep 25.6 1.5E+03 0.033 29.1 24.2 66 1157-1223 299-365 (553)
474 TIGR02322 phosphon_PhnN phosph 25.4 26 0.00056 36.9 0.3 16 168-183 3-18 (179)
475 COG0630 VirB11 Type IV secreto 25.4 26 0.00055 41.4 0.3 21 165-185 142-162 (312)
476 KOG0926 DEAH-box RNA helicase 25.3 35 0.00077 44.8 1.5 18 166-183 271-288 (1172)
477 KOG0354 DEAD-box like helicase 25.3 35 0.00076 44.7 1.5 44 137-183 44-93 (746)
478 PF12774 AAA_6: Hydrolytic ATP 25.3 37 0.00081 38.4 1.6 48 168-215 34-82 (231)
479 cd03407 Band_7_4 A subgroup of 25.2 1.1E+03 0.023 27.1 14.6 48 1157-1207 110-167 (262)
480 cd01380 MYSc_type_V Myosin mot 25.2 46 0.001 43.4 2.5 21 163-183 83-103 (691)
481 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.1 7.9E+02 0.017 25.5 16.1 117 1093-1215 12-128 (132)
482 TIGR02236 recomb_radA DNA repa 25.1 46 0.00099 38.6 2.3 31 154-184 80-113 (310)
483 COG3829 RocR Transcriptional r 25.0 38 0.00083 42.9 1.7 44 131-180 239-282 (560)
484 COG0464 SpoVK ATPases of the A 25.0 29 0.00062 42.9 0.7 82 133-214 238-331 (494)
485 PF08549 SWI-SNF_Ssr4: Fungal 24.9 1E+02 0.0022 40.1 5.2 47 1242-1288 362-412 (669)
486 KOG0727 26S proteasome regulat 24.9 45 0.00098 38.8 2.1 84 133-216 151-246 (408)
487 PRK15424 propionate catabolism 24.9 34 0.00075 43.3 1.3 22 162-183 238-259 (538)
488 KOG4722 Zn-finger protein [Gen 24.9 1.5E+03 0.032 28.6 18.3 30 898-927 124-153 (672)
489 PHA02624 large T antigen; Prov 24.8 45 0.00098 43.0 2.3 29 157-185 420-450 (647)
490 cd01124 KaiC KaiC is a circadi 24.8 34 0.00073 35.9 1.0 15 169-183 2-16 (187)
491 PF10146 zf-C4H2: Zinc finger- 24.7 1.1E+03 0.024 27.2 13.8 100 1143-1266 4-103 (230)
492 PF10158 LOH1CR12: Tumour supp 24.6 5.2E+02 0.011 27.4 9.5 52 1209-1260 34-86 (131)
493 smart00787 Spc7 Spc7 kinetocho 24.6 1.3E+03 0.028 27.8 16.4 141 1122-1267 147-287 (312)
494 PRK06217 hypothetical protein; 24.6 31 0.00068 36.8 0.8 14 169-182 4-17 (183)
495 cd01983 Fer4_NifH The Fer4_Nif 24.6 30 0.00065 31.3 0.5 17 169-185 2-18 (99)
496 KOG4674 Uncharacterized conser 24.6 2.6E+03 0.056 31.3 36.8 161 1093-1265 726-886 (1822)
497 PRK03947 prefoldin subunit alp 24.5 8.1E+02 0.017 25.4 11.5 47 1234-1280 91-137 (140)
498 KOG0995 Centromere-associated 24.4 1.7E+03 0.037 29.1 30.2 67 962-1033 304-374 (581)
499 PF08657 DASH_Spc34: DASH comp 24.3 2.7E+02 0.0059 32.5 8.1 36 1133-1168 164-201 (259)
500 PRK10698 phage shock protein P 24.2 8.9E+02 0.019 27.6 12.0 93 1157-1269 34-131 (222)
No 1
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=0 Score=3198.17 Aligned_cols=1302 Identities=75% Similarity=1.075 Sum_probs=1207.1
Q ss_pred CCCCCCCcchhhcccccCCCCCCCCCCCCCCCCcchh-hhhccCcccCCCCCCCCCCC------CCCCCCCCCCCCCCCC
Q 000699 1 MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKT-LRRQKSAKENAPPSDLNSLQ------PSPSPAKMKSPLPPRP 73 (1345)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~sss~s~~~~~~~s~~-~rk~~~~~en~~ps~~~s~~------p~~s~a~~~s~~pp~p 73 (1345)
|||||+|||+|+|++.+. ..+||+|+++++++ .||+++++||+||+++|++. ++|.|+..++|.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~p~p~~~~~~~~~~~~~~~~e~~~p~~~n~~~~~~~~~~~~~~~~~~sp~p~~p 75 (1320)
T PLN03188 1 MKHFMLPRNAILRETSSG-----EEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAKLKSPLPPRP 75 (1320)
T ss_pred CcccccchhHHhhhcccC-----CCCCCCcccccCCcchhhhccccccCCCCCcccccccccccCCCccccccCCCCCCC
Confidence 999999999999999544 44788888888876 47999999999999999654 2445577888888888
Q ss_pred C--ChhhhhccccCCCCCCCCCCCCCCcEEEEEeCCCCccccCCCcEEEEeCCCeeEEcCeeEEeceecCCCCChhHHHH
Q 000699 74 P--NPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQ 151 (1345)
Q Consensus 74 P--~p~~r~l~~~s~p~~~~~~~~~~~VkVvVRVRPl~~~E~~g~~iV~~~s~~si~v~~ktFtFD~VFd~~aSQedVFe 151 (1345)
| +|++|++.....+++ +.++.+|+|||||||++..| .+..++....++.+.++++.|+||+||+++++|++||+
T Consensus 76 p~s~~l~rk~~~~~~~en---~~~ds~VkV~VRVRPl~~~E-~g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe 151 (1320)
T PLN03188 76 PSSNPLKRKLSAETAPEN---GVSDSGVKVIVRMKPLNKGE-EGEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQ 151 (1320)
T ss_pred CCCcchhccccccccccc---cCCCCCeEEEEEcCCCCCcc-CCCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHH
Confidence 8 477788776655443 44678999999999999886 45567777888899999999999999999999999999
Q ss_pred hhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEE
Q 000699 152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCR 231 (1345)
Q Consensus 152 ~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~ 231 (1345)
.++.|||+++|+|||+||||||||||||||||+|+.++..+.......+|||||++++||..|...+.+..+....|.|+
T Consensus 152 ~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~ 231 (1320)
T PLN03188 152 LVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCR 231 (1320)
T ss_pred HHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEE
Confidence 99999999999999999999999999999999998765555555677899999999999999987766666677899999
Q ss_pred EEEEEEecceeeecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEE
Q 000699 232 CSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311 (1345)
Q Consensus 232 VSflEIYNEkV~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~ 311 (1345)
|||||||||+|||||++....+.|++|+.+|+||.||+++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+
T Consensus 232 vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~ 311 (1320)
T PLN03188 232 CSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311 (1320)
T ss_pred EEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCcc
Q 000699 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRL 391 (1345)
Q Consensus 312 Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKL 391 (1345)
|.+......+|...++.|+|+|||||||||.+.+++.|.+++|+++||+||++||+||++|++.++.++..|||||||||
T Consensus 312 Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 312 VESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred EEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence 99876655566667788999999999999999999999999999999999999999999999877677889999999999
Q ss_pred ccccccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHHHHHHHHHHHHhCCCC
Q 000699 392 TFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHN 471 (1345)
Q Consensus 392 TrLLQDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir~Lr~EL~~LK~~~~~ 471 (1345)
|+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|++|+...++++.|+++|++|++||.+||..+.+
T Consensus 392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~ 471 (1320)
T PLN03188 392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNN 471 (1320)
T ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhh-hHHhhhhhhcc--CCCCCCCCCCCCcchhhhccHHHHHHHHHHHHhhhcCccccccccccccccccc
Q 000699 472 PTDPNGVHTAGW-ARRSLNLLKSF--HHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKS 548 (1345)
Q Consensus 472 ~~~~~~~~~~~~-~~~sl~~l~~~--~~~~~l~~~~~~~~ee~~i~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1345)
|.+.++.|+++| ++++|++|+.+ +|+..||++++|+|++|+|||++++++|.++..-....+.+.........+.+.
T Consensus 472 p~~~n~~y~t~~~~r~sl~~l~~~~l~~~~~lp~i~~d~~~~m~ide~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (1320)
T PLN03188 472 PTNPNVAYSTAWNARRSLNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVERLCVQVGLQPAGAAEGNNVDMGRVESIHS 551 (1320)
T ss_pred CCCCCcccccchhHHHHHHHHHhccCCCCcCCCccccccchhhhcchhHHHHHHHHhcccchhHHHHHHHhhhccccccc
Confidence 999999999999 99999999873 999999999999999999999999998766543322222111111111111110
Q ss_pred ccccccccccchhhcchhhhhcccccccccccchhhhhhhcccchhccccccccCCCCCccccccccccccCCccccchh
Q 000699 549 ESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQL 628 (1345)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1345)
.+ .-.|.+...++++|.|+..++++++.+..++.+|..++++.+++..
T Consensus 552 -------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 599 (1320)
T PLN03188 552 -------SD------QQSIIKQGSEDTDVDMEEAISEQEEKHEITIVDCAEPVRNTQNSLQ------------------- 599 (1320)
T ss_pred -------cc------chhhhcccccccchhhhhhhcccccccccccccccccccccccccc-------------------
Confidence 00 0123355678899999999999999999999999999888776543
Q ss_pred hhhhccccchhhhhhhhhccCCcccchhhhhhhhhhcCCCCCCCCCCCCcccc--cccccCCCCCcccccccCCCCccee
Q 000699 629 IVSTVKRDSSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVL--ADVEYTPNLSANSAVNCASPSSVSI 706 (1345)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~si 706 (1345)
+++..+.+...+.+++.+++++++.++++..+++++....+|..++...|.+ .-+.+.+|+.++.+++++++++|||
T Consensus 600 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsi 678 (1320)
T PLN03188 600 -IDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESNDSENELVNCASPSSLSI 678 (1320)
T ss_pred -ccccccccccccccccccccccccccccccccccccccCCccccccccccccccccccccccccccccccCCCcccccc
Confidence 5567778888899999999999999999999999999999999777644332 2377888999999999999999999
Q ss_pred ecccCCCCCCCCCCCCCcccccccccccccccccccccccccCCCCChhhhhhhhhhcccccCCCcccccccCCcCCchh
Q 000699 707 IQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTKSSLADAPSIQMGKNVMTTTE 786 (1345)
Q Consensus 707 ~~~~~s~~l~~p~~s~sp~~~~~rks~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 786 (1345)
+||++||+|++||+|+||||+|+|||+++|+++++|++|+...+.+.+...+.+++++++.+++.++|+|++|+|++||+
T Consensus 679 ~p~~~~~~l~~p~~s~sp~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~t~ 758 (1320)
T PLN03188 679 VPVEVSPVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKSKSFLAPTE 758 (1320)
T ss_pred ccccccccccCCccccCCCcccchhhhhhhcccccccchhcccccccccccccchhhhhhcccccccccccccccCCchH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred hHHHHhhhccccccccccCcccccccccccccccccchhhhhhhcccccccccCCCCCccc-chhhhchhhhhhhhhhhh
Q 000699 787 HLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEED-LVSFLCNKCKNRAQLDIK 865 (1345)
Q Consensus 787 ~laasl~rgl~iid~h~~~~a~~~s~~~~s~~~~~~~~~~~~~k~~~~~q~~~~~~~~~~~-~~~~lc~~c~~~~~~~~~ 865 (1345)
||||||||||+||||||+|+|||||||||||+|++++||..|+||||||||+|++.+..++ +..|||++||.+++++++
T Consensus 759 ~laasl~rgl~ii~~h~~~~~~~rss~~~s~~~~~~~~~~~~~k~~~~vq~~~~~~~~~~~~~~~~lc~~c~~~~~~~~~ 838 (1320)
T PLN03188 759 HLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDAK 838 (1320)
T ss_pred HHHHHHhcchHHHhhcccCchhhccceecccccccccccccccccchhhhcccccccccccccchhcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999998665554 899999999999999999
Q ss_pred hhhccccccccccCCCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhH
Q 000699 866 EANENSRLQLVPVDGSESADKSK-LVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTRE 944 (1345)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re 944 (1345)
++++++++|+||+||+++++++| ||||+|||||||||||||+||+||+|||+||+||||||||||||||||+||+||||
T Consensus 839 ~~~~~~~~~~v~~~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~ 918 (1320)
T PLN03188 839 DADDSSNLQLVPVDGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTRE 918 (1320)
T ss_pred cccccccceeeeccCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHH
Q 000699 945 DKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDL 1024 (1345)
Q Consensus 945 ~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~L 1024 (1345)
|||+|||+||||+||+++||+||+++||||||+||+||+||||||+++||||||||||++|+||||+|||||||+|||+|
T Consensus 919 ~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dl 998 (1320)
T PLN03188 919 DKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDL 998 (1320)
T ss_pred hhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Q 000699 1025 RSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASR 1104 (1345)
Q Consensus 1025 r~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r 1104 (1345)
|+|||||+|+|.+++++++++++|+|.|.|++.|++++|+++++++.+++||+||+|||||||+||+||||||+|||++|
T Consensus 999 r~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r 1078 (1320)
T PLN03188 999 RSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASR 1078 (1320)
T ss_pred HHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHH
Q 000699 1105 SLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFIN 1184 (1345)
Q Consensus 1105 ~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~ 1184 (1345)
+||||+++||+.||+|+|||+|||||||+||||||||||||||||||||+|||+|||||+|||||||||||||||+||||
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1185 VLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLK 1264 (1345)
Q Consensus 1185 ~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk 1264 (1345)
|||||||||||||||||+|||||||+||+|||||||||||||||||||||||||+++||+|||+|||||+||||||||||
T Consensus 1159 alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1159 ALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhcCCCcccCCccccCCcccccCCCCCCCCCchHHHHHHHhhhccCch-hhhcccCCC-CcccCcc
Q 000699 1265 KKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEEEPHSAGDQQWREEFQQFYTDDS-EISKLAEPS-WFSGYDR 1342 (1345)
Q Consensus 1265 ~kh~~e~~t~~~~laes~lp~~~~~~~~~~~~~~~~~~~~~~~~~~dq~wr~ef~~~~~~~~-~~~~~~~~~-~~~~~~~ 1342 (1345)
|||+|||+||||||||||||+++|+|+|+++.|++|| ++++.++|||+||+||+|||+.++ |+||+|||| |||||||
T Consensus 1239 rkh~~e~~t~~q~~aes~l~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~wr~ef~~~y~~~~~~~s~~~~~~~wf~gyd~ 1317 (1320)
T PLN03188 1239 RKHENEISTLNQLVAESRLPKEAIRPACNDDCMAKYD-AGEPLSEGDQQWREEFEPFYKKEDGELSKLAEPSSWFSGYDR 1317 (1320)
T ss_pred HHHHHHHHHHHHHHhhccCChhhcCcccccccccccc-ccCCCCcchHHHHHHHhhhhcccchhhhcccCcchhhccCcc
Confidence 9999999999999999999999999999999999999 566779999999999999999755 999999998 9999999
Q ss_pred CCC
Q 000699 1343 CNI 1345 (1345)
Q Consensus 1343 ~~~ 1345 (1345)
|||
T Consensus 1318 cni 1320 (1320)
T PLN03188 1318 CNI 1320 (1320)
T ss_pred cCC
Confidence 998
No 2
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=100.00 E-value=1.9e-193 Score=1617.09 Aligned_cols=485 Identities=71% Similarity=1.013 Sum_probs=474.9
Q ss_pred CchhhHHHHhhhccccccccccCcccccccccccccccccchhhhhhhcccccccccCCCCCcccchhhhchhhhhhhhh
Q 000699 783 TTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQL 862 (1345)
Q Consensus 783 ~~t~~laasl~rgl~iid~h~~~~a~~~s~~~~s~~~~~~~~~~~~~k~~~~~q~~~~~~~~~~~~~~~lc~~c~~~~~~ 862 (1345)
+||+|||||||||||||||||+|||||||||||||+|++++||.+|+||||+|||+|++..+.+ ++|+|++||++++.
T Consensus 1 spTeSLAASLqRGLqIIDyHq~NsA~rrSSvsfSf~~l~l~P~~~v~KvDv~vQT~pe~~~~~~--a~llC~sCk~~~~~ 78 (488)
T PF06548_consen 1 SPTESLAASLQRGLQIIDYHQQNSALRRSSVSFSFRHLALKPCQPVDKVDVAVQTLPEDNESRD--ASLLCSSCKKKIQD 78 (488)
T ss_pred CcchHHHHHHhcCchhhhccccCccccccccccccCCccCCCcchhhhccHHhhcCcccccccc--chhhhhhhcchhhc
Confidence 4899999999999999999999999999999999999999999999999999999999987777 59999999999966
Q ss_pred hh--hhhhccccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000699 863 DI--KEANENSRLQLVPVDGSESADKSKLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIIS 940 (1345)
Q Consensus 863 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~ 940 (1345)
++ +++++++++||||+|+++ |+||+||+|||||||+||+||+|||++|+||||||||||||||||+||+
T Consensus 79 ~~~~~e~~~~~~lqLv~~d~~~---------KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~ErE~naiI~ 149 (488)
T PF06548_consen 79 DDNSKENDNSSKLQLVPADGSE---------KAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHERECNAIIA 149 (488)
T ss_pred chhhccccccccceeeccccch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence 66 888999999999999974 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhh-cCchhHHHHHH
Q 000699 941 QTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNF-YDLGEKEVLLE 1019 (1345)
Q Consensus 941 ~~re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~-~d~~ErE~Ll~ 1019 (1345)
|+|++||+|||+||||++|+++||+||+.||+|||||||++|+|||||++++||+|+|||||+.|+|| ||+|||||||+
T Consensus 150 Q~re~k~~rleslmdg~l~~~e~~~ee~~sl~~e~KlLk~~~en~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~ 229 (488)
T PF06548_consen 150 QTREDKILRLESLMDGVLPTEEFIDEEYVSLMHEHKLLKEKYENHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLE 229 (488)
T ss_pred HhhhhHHHHHHHhhccccchHHHhhhHhhhhhhHhhhhhhhccCchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHH
Q 000699 1020 EVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNE 1099 (1345)
Q Consensus 1020 EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~e 1099 (1345)
|||+||+|||+|+|+|.++.+++.++++++|.+.| ++++++++++.+++||+||+|||||||+|||||||||+|
T Consensus 230 EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~------~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~d 303 (488)
T PF06548_consen 230 EIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRP------SAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVD 303 (488)
T ss_pred HHHHHHHHHHhccccccccccccccHHhhhhccCC------CCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999999999888888888999999999998 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCch
Q 000699 1100 LEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAE 1179 (1345)
Q Consensus 1100 Le~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~ 1179 (1345)
||++|+||||+++||+.||||+|||+|||||||+||||||||||||||||++||+|||+||+||+|||||||||||||||
T Consensus 304 le~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~ 383 (488)
T PF06548_consen 304 LESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAE 383 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1180 SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQ 1259 (1345)
Q Consensus 1180 ~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q 1259 (1345)
+|||||||||||||||||||||+||||||||||+|||||||||||||||||||||||||+++||+||++|+|||+|||||
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHhhcCCC
Q 000699 1260 IDQLKKKHEMEVSTLNEIIAESRLP 1284 (1345)
Q Consensus 1260 ~~klk~kh~~e~~t~~~~laes~lp 1284 (1345)
||||||||+|||+||||||||||||
T Consensus 464 iekLK~kh~~Ei~t~kq~laes~lp 488 (488)
T PF06548_consen 464 IEKLKRKHKMEISTMKQYLAESRLP 488 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-90 Score=812.06 Aligned_cols=355 Identities=53% Similarity=0.767 Sum_probs=315.8
Q ss_pred CCCCcEEEEEeCCCCccccCC-C-cEEEE----------eCCCeeEEcCeeEEeceecCCCCChhHHHHhhchhhHHHHh
Q 000699 95 SDSGVKVIVRMRPLNKEENEG-E-MIVQK----------VADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCL 162 (1345)
Q Consensus 95 ~~~~VkVvVRVRPl~~~E~~g-~-~iV~~----------~s~~si~v~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvL 162 (1345)
...+|+|+||+||++..+... . .++.. .......-..+.|+||+||+++++|++||+.++.|+|++||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 356799999999999866221 1 11111 11111222356899999999999999999999999999999
Q ss_pred cCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEeccee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQI 242 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV 242 (1345)
+|||+||||||||||||||||+|+ .+...|||||+|.+||.+|+..+. ...|.|+|||+|||||.|
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~---------~~~~~GiiPraf~~LF~~I~~~~~-----~~~f~vrvS~lEiYnE~i 148 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGP---------DPELRGLIPRAFEHLFRHIDERKE-----KTRFLVRVSYLEIYNESI 148 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCC---------ChhhCCchhHHHHHHHHHHHhccc-----cceEEEEeehHHHHhHHH
Confidence 999999999999999999999996 257899999999999999986532 237999999999999999
Q ss_pred eecCCCCC-CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCC
Q 000699 243 TDLLDPSQ-RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKAD 321 (1345)
Q Consensus 243 ~DLL~p~~-~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~d 321 (1345)
+|||++.+ +.|.++++++.||||+||+++.|.+++|++.+|..|..+|++++|.||..|||||+||||+|++. ....+
T Consensus 149 ~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~-~~~~~ 227 (574)
T KOG4280|consen 149 RDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESS-EKSDG 227 (574)
T ss_pred HHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEee-cccCC
Confidence 99999987 58999999999999999999999999999999999999999999999999999999999999983 33355
Q ss_pred CCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCC
Q 000699 322 GISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGG 401 (1345)
Q Consensus 322 g~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGG 401 (1345)
|....+.|||+|||||||||+.++|+.|+|++|+.+||+||++||+||.+|++. +..||||||||||+||||||||
T Consensus 228 ~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~----~~~HIPYRdSkLT~LLqdSLGG 303 (574)
T KOG4280|consen 228 GLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDG----SKTHIPYRDSKLTRLLQDSLGG 303 (574)
T ss_pred CccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcc----ccCCCCcchhHHHHHHHHHcCC
Confidence 677889999999999999999999999999999999999999999999999973 4459999999999999999999
Q ss_pred CcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccch-hhHHHHHHHHHHHHHHHHHHHhC
Q 000699 402 NAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNYLREVIRQLRDELHRMKAN 468 (1345)
Q Consensus 402 NSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~-~~v~~Lr~~Ir~Lr~EL~~LK~~ 468 (1345)
||+|+|||||+|+..+++|||+|||||+|||.|+|+|++|+++. ..+..|+++|+.|+.+|...+..
T Consensus 304 N~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 304 NSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred CceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccCc
Confidence 99999999999999999999999999999999999999999998 56788888888888888877654
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-89 Score=820.39 Aligned_cols=357 Identities=46% Similarity=0.701 Sum_probs=327.0
Q ss_pred CCCcEEEEEeCCCCcccc-CCCcEEEEeCCCeeEEc-------CeeEEeceecCCC-------CChhHHHHhhchhhHHH
Q 000699 96 DSGVKVIVRMRPLNKEEN-EGEMIVQKVADDSLSIN-------GHTFTFDSVADME-------ATQLDVFQLVGVPLVEN 160 (1345)
Q Consensus 96 ~~~VkVvVRVRPl~~~E~-~g~~iV~~~s~~si~v~-------~ktFtFD~VFd~~-------aSQedVFe~vv~PLVds 160 (1345)
...|+|+|||||++..|. ....||+.+.++++++. ...|+||+.||.. ++|..||+.++.|+|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 467999999999999994 34678888888776662 3469999999864 78999999999999999
Q ss_pred HhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecc
Q 000699 161 CLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNE 240 (1345)
Q Consensus 161 vLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNE 240 (1345)
+|+|||+||||||||||||||||+|.. .++++|||||+|++||.+|...+ ..+..|.|.|||+|||||
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~--------~~~e~GIIPrlCEeLF~ri~~nq----~~~~sy~VevSymEIYcE 150 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQ--------EPDEPGIIPRLCEELFSRIADNQ----SQQMSYSVEVSYMEIYCE 150 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccC--------CCCCCCchhHHHHHHHHHHhhcc----cccceEEEEEeehhHHHH
Confidence 999999999999999999999999954 45789999999999999998643 567899999999999999
Q ss_pred eeeecCC-CC-CCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeecc
Q 000699 241 QITDLLD-PS-QRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKS 318 (1345)
Q Consensus 241 kV~DLL~-p~-~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~ 318 (1345)
+|+|||+ |. ..+|++||+|..|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||++.+....
T Consensus 151 rVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~ 230 (1221)
T KOG0245|consen 151 RVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHD 230 (1221)
T ss_pred HHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecc
Confidence 9999998 54 457999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhc--CCCCCCccCCCCccccccc
Q 000699 319 KADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ--TGKQRHIPYRDSRLTFLLQ 396 (1345)
Q Consensus 319 ~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~--s~k~~hIPYRDSKLTrLLQ 396 (1345)
...|....++|||+|||||||||+..+|+.|+|||||.+|||||++||+||.||++.+. +++..+||||||.|||||+
T Consensus 231 ~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLk 310 (1221)
T KOG0245|consen 231 QDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLK 310 (1221)
T ss_pred ccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHH
Confidence 66667788999999999999999999999999999999999999999999999999863 2445699999999999999
Q ss_pred cccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 000699 397 ESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGH 470 (1345)
Q Consensus 397 DSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir~Lr~EL~~LK~~~~ 470 (1345)
++|||||||+|||+|||++.||+|||+|||||+|||.|+|+++||+++... .||+|++|+.+||....
T Consensus 311 EnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK------LIRELreEv~rLksll~ 378 (1221)
T KOG0245|consen 311 ENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK------LIRELREEVARLKSLLR 378 (1221)
T ss_pred HhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998765 79999999999987544
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-88 Score=821.28 Aligned_cols=369 Identities=41% Similarity=0.645 Sum_probs=319.8
Q ss_pred CCCCcEEEEEeCCCCccccCC-CcEEEEeCC--CeeEE--------cCeeEEeceecCCCCChhHHHHhhchhhHHHHhc
Q 000699 95 SDSGVKVIVRMRPLNKEENEG-EMIVQKVAD--DSLSI--------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLS 163 (1345)
Q Consensus 95 ~~~~VkVvVRVRPl~~~E~~g-~~iV~~~s~--~si~v--------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe 163 (1345)
.+.+|+|+|||||++..|... ...|+.+.+ ..|.+ ..++|+||+||+|.+.|++||+.++.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 478999999999999998543 333333333 11332 2578999999999999999999999999999999
Q ss_pred CCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceee
Q 000699 164 GFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQIT 243 (1345)
Q Consensus 164 GyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~ 243 (1345)
|||||||||||||+||||||.|...... +..+...|||||++.+||..+.. .+..|.|+|||+|+|||.|+
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~--g~l~~~aGIIPRal~~IFd~Le~-------~~~EYsvKVSfLELYNEEl~ 197 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKN--GELPSEAGIIPRALRQIFDTLEA-------QGAEYSVKVSFLELYNEELT 197 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCccccc--CCCCccCCcchHHHHHHHHHHHh-------cCCeEEEEEEehhhhhHHHH
Confidence 9999999999999999999999654321 34677899999999999999864 34799999999999999999
Q ss_pred ecCCCCCC---CcceeecC-----CCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEee
Q 000699 244 DLLDPSQR---NLQIREDV-----KSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESR 315 (1345)
Q Consensus 244 DLL~p~~~---~L~IrED~-----~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~ 315 (1345)
|||++... .+.+..++ ++|++|.||.++.|+++.|++.+|.+|...|++++|.||..|||||+||+|+|...
T Consensus 198 DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhik 277 (1041)
T KOG0243|consen 198 DLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIK 277 (1041)
T ss_pred HhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEe
Confidence 99987543 35555554 78999999999999999999999999999999999999999999999999999766
Q ss_pred eccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCcccccc
Q 000699 316 CKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLL 395 (1345)
Q Consensus 316 ~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLL 395 (1345)
.. ...|...++.|||+||||||||...++|+.+.|.+|++.||+||++||+||+||++ +..|||||+|||||||
T Consensus 278 e~-t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe-----~s~HIPYRESKLTRLL 351 (1041)
T KOG0243|consen 278 EN-TPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE-----HSGHIPYRESKLTRLL 351 (1041)
T ss_pred cC-CCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc-----cCCCCCchHHHHHHHH
Confidence 43 35567788999999999999999999999999999999999999999999999997 5589999999999999
Q ss_pred ccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 000699 396 QESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHNPTDP 475 (1345)
Q Consensus 396 QDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir~Lr~EL~~LK~~~~~~~~~ 475 (1345)
||||||.+||+|||||||+..+++|||+||.||.|||+|+|+|.+|+-+.+++ .|..|-.|+.+||......++.
T Consensus 352 QDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~-----llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 352 QDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKT-----LLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHH-----HHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999998776653 4555666666666666666677
Q ss_pred CCccchhh
Q 000699 476 NGVHTAGW 483 (1345)
Q Consensus 476 ~~~~~~~~ 483 (1345)
+|.|.+..
T Consensus 427 nGvyisee 434 (1041)
T KOG0243|consen 427 NGVYISEE 434 (1041)
T ss_pred CceEechH
Confidence 88886554
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.3e-81 Score=724.10 Aligned_cols=414 Identities=40% Similarity=0.622 Sum_probs=336.3
Q ss_pred CCCCcEEEEEeCCCCcccc-CCCc-EEEEeC-CCeeEEcC----eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcc
Q 000699 95 SDSGVKVIVRMRPLNKEEN-EGEM-IVQKVA-DDSLSING----HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNS 167 (1345)
Q Consensus 95 ~~~~VkVvVRVRPl~~~E~-~g~~-iV~~~s-~~si~v~~----ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNa 167 (1345)
...+|+|+||+||++..|. .+.. +....+ .+++.+.+ .+|.||+||.|+++|++||..++.|+|++||.|||+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 3567999999999998883 2332 222233 45666655 899999999999999999999999999999999999
Q ss_pred cEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCC
Q 000699 168 SVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD 247 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~ 247 (1345)
||||||||||||||||.|... +....|||||++++||.+|.. .+....|.|.|||||||+|+|+|||+
T Consensus 85 TvfaYGqT~sGKTytm~G~~~-------d~~~~GIipRi~~diF~~Iys-----~~~n~efhVkVsy~EIYmEKi~DLL~ 152 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGH-------DPEEMGIIPRILNDIFDHIYS-----MEENLEFHVKVSYFEIYMEKIRDLLD 152 (607)
T ss_pred eEEEecCCCCCcceeecccCC-------ChhhcCcHHHHHHHHHHHHhc-----CcccceEEEEEEeehhhhhHHHHHhC
Confidence 999999999999999999653 456789999999999999964 35668999999999999999999999
Q ss_pred CCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceee
Q 000699 248 PSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFK 327 (1345)
Q Consensus 248 p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k 327 (1345)
+...++.+++|...++||+|+++..|.+++++++++..|..+|.++.|+||.+|||||+||+|+|.+..... ...+
T Consensus 153 ~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~----~~~~ 228 (607)
T KOG0240|consen 153 PEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED----KRKL 228 (607)
T ss_pred cccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc----hhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998875432 2357
Q ss_pred EEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeE
Q 000699 328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM 407 (1345)
Q Consensus 328 ~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~m 407 (1345)
.|+|+||||||||++.++|+.|..+.|+++||+||++||+||+||++ |...|||||||||||||||+|||||||++
T Consensus 229 ~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~----g~~shipYRDSKLTRILqdSLGGNsRTtl 304 (607)
T KOG0240|consen 229 SGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAE----GPKSHIPYRDSKLTRILQDSLGGNSRTTL 304 (607)
T ss_pred cccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhc----CCCCCCcchhhHHHHHHHHHhCCCcceEE
Confidence 89999999999999999999999999999999999999999999995 56789999999999999999999999999
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhh------------HHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 000699 408 ICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD------------VNYLREVIRQLRDELHRMKANGHNPTDP 475 (1345)
Q Consensus 408 Ia~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~------------v~~Lr~~Ir~Lr~EL~~LK~~~~~~~~~ 475 (1345)
|+|++|+..+..||.+||+|++|||.|+|.+.+|.....+ ...+...++.++.+|.+++.....+.+.
T Consensus 305 Ii~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de 384 (607)
T KOG0240|consen 305 IICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDE 384 (607)
T ss_pred EEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchh
Confidence 9999999999999999999999999999999999754321 2233445555555665555443332211
Q ss_pred CCccchhhhHHhhhhhhccCCCCCCCCCCCCcchhhhccHHHHHHHHHHHHhhhcCc
Q 000699 476 NGVHTAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGI 532 (1345)
Q Consensus 476 ~~~~~~~~~~~sl~~l~~~~~~~~l~~~~~~~~ee~~i~e~~~~~l~~~~~~~~~~~ 532 (1345)
.-.. ......+. .+. .....+.......+++.++.++.++.|++|++....-.
T Consensus 385 ~~~~-~~~~k~~~-~~~--~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~ 437 (607)
T KOG0240|consen 385 DFSL-KEEAKMSA-ILS--EEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQI 437 (607)
T ss_pred hhhH-HHHHHhhh-hhh--hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00000000 000 01112222222234566777888888888887765533
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.6e-80 Score=700.47 Aligned_cols=331 Identities=61% Similarity=0.937 Sum_probs=294.6
Q ss_pred CcEEEEEeCCCCccccC--CCcEEEEeCCCeeEEc---CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeec
Q 000699 98 GVKVIVRMRPLNKEENE--GEMIVQKVADDSLSIN---GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAY 172 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~--g~~iV~~~s~~si~v~---~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAY 172 (1345)
+|+|+|||||+...|.. ...++....++.+.+. .+.|.||+||+++++|++||+.++.|+|+++|+|||+|||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aY 81 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAY 81 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEe
Confidence 69999999999988743 3346655555555543 379999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCCCCC
Q 000699 173 GQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRN 252 (1345)
Q Consensus 173 GQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~~~~ 252 (1345)
|||||||||||+|+..... ......+|||||++++||..+...+.+. .....|.|+|||+|||||+|||||++....
T Consensus 82 GqTGSGKTyTm~G~~~~~~--~~~~~~~Giipr~~~~Lf~~i~~~~~~~-~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 82 GQTGSGKTYTMMGPSSSDD--ESPHGLQGVIPRIFEYLFSLIQREEEKR-GDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred CCCCCCceEEecCCCCccc--cccccCCCHHHHHHHHHHHHHHhhhhhc-ccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 9999999999999754211 1234678999999999999997654322 356789999999999999999999998888
Q ss_pred cceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEEE
Q 000699 253 LQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRIN 332 (1345)
Q Consensus 253 L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL~ 332 (1345)
+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|.+.... ++......|+|+
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~~~~~s~l~ 236 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK--ASSTNIRTSRLN 236 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC--CCCCcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999876442 233356779999
Q ss_pred EEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEecC
Q 000699 333 LVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAIS 412 (1345)
Q Consensus 333 LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~IS 412 (1345)
|||||||||...+++.|.+++|+.+||+||++||+||.+|++.. .++..||||||||||+||||+|||||+|+||||||
T Consensus 237 ~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~-~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vs 315 (337)
T cd01373 237 LVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVA-HGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVS 315 (337)
T ss_pred EEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhc-cCCCCccCCcccHHHHHHHHhcCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999998754 34578999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHhcc
Q 000699 413 PAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 413 Ps~~~~eETLSTLrFAsRAK~I 434 (1345)
|+..+++||++||+||+|||+|
T Consensus 316 P~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 316 PSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999987
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-80 Score=729.93 Aligned_cols=410 Identities=41% Similarity=0.624 Sum_probs=342.5
Q ss_pred CCCCcEEEEEeCCCCccccCC-CcEEEEeCCCeeEE-------------cCeeEEeceecCCC-------CChhHHHHhh
Q 000699 95 SDSGVKVIVRMRPLNKEENEG-EMIVQKVADDSLSI-------------NGHTFTFDSVADME-------ATQLDVFQLV 153 (1345)
Q Consensus 95 ~~~~VkVvVRVRPl~~~E~~g-~~iV~~~s~~si~v-------------~~ktFtFD~VFd~~-------aSQedVFe~v 153 (1345)
++.+|||+|||||++.+|.+- ..|++.+.....++ +.++|.||++|++. +.|++||..+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 577899999999999998443 33444433332222 35799999999874 7899999999
Q ss_pred chhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEE
Q 000699 154 GVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCS 233 (1345)
Q Consensus 154 v~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VS 233 (1345)
+..+|+++|+|||+||||||||||||||||+|. .+++|||||++..||.+|.... .....|.|.||
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt----------~~QpGiIPrlc~~lFe~I~k~~----n~~~tfkVeVS 147 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGT----------AEQPGIIPRLCESLFERIDKES----NPSQTFKVEVS 147 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeecc----------CCCCCchhHHHHHHHHHHHhcc----CCCceEEEEEE
Confidence 999999999999999999999999999999994 4679999999999999997643 66789999999
Q ss_pred EEEEecceeeecCCCCC--CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEE
Q 000699 234 FLEIYNEQITDLLDPSQ--RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311 (1345)
Q Consensus 234 flEIYNEkV~DLL~p~~--~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~ 311 (1345)
|+|||||++||||+|.. ..|+++++.-.|+||.||++..|+|++|+..+|..|+++|++++|+||..|||||+||.|.
T Consensus 148 ymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslv 227 (1714)
T KOG0241|consen 148 YMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLV 227 (1714)
T ss_pred HHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEE
Confidence 99999999999999854 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhc-CCCCCCccCCCCc
Q 000699 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQ-TGKQRHIPYRDSR 390 (1345)
Q Consensus 312 Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~-s~k~~hIPYRDSK 390 (1345)
|.++-.+...|.+.-+.|||.|||||||||..++|+.|.|++|+++||+||++||.||.+|++.+. .|+.++||||||.
T Consensus 228 vtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSV 307 (1714)
T KOG0241|consen 228 VTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSV 307 (1714)
T ss_pred EeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHH
Confidence 999877777777778899999999999999999999999999999999999999999999998653 4568899999999
Q ss_pred cccccccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 000699 391 LTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGH 470 (1345)
Q Consensus 391 LTrLLQDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir~Lr~EL~~LK~~~~ 470 (1345)
||+||||+|||||+|+||+||||+.++|+|||+|||||+|||+|+|+++||+++... .|+.|++|+..||..+.
T Consensus 308 LTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar------virElReEve~lr~qL~ 381 (1714)
T KOG0241|consen 308 LTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR------VIRELREEVEKLREQLE 381 (1714)
T ss_pred HHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988765 35555555555554433
Q ss_pred CCCCCCCccchhhhHHhhhhhhccCCCCCCCCCCCCcchhhhccHHHHHHHHHHHHhhhcCcc
Q 000699 471 NPTDPNGVHTAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIE 533 (1345)
Q Consensus 471 ~~~~~~~~~~~~~~~~sl~~l~~~~~~~~l~~~~~~~~ee~~i~e~~~~~l~~~~~~~~~~~~ 533 (1345)
...............+++.++++ |..+=+|...-.|+...+++.+|..+..+..
T Consensus 382 ~ae~~~~~el~e~l~esekli~e---------i~~twEEkl~ktE~in~erq~~L~~~gis~~ 435 (1714)
T KOG0241|consen 382 QAEAMKLPELKEKLEESEKLIKE---------ITVTWEEKLRKTEEINQERQAQLESMGISLE 435 (1714)
T ss_pred hhhhccchHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111111112224444444432 3333445555556677777888877666554
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-80 Score=747.90 Aligned_cols=352 Identities=47% Similarity=0.722 Sum_probs=312.3
Q ss_pred CCCcEEEEEeCCCCcccc-CCCcEEEEeCCCeeE-E---c-------CeeEEeceecCCCCChhHHHHhhchhhHHHHhc
Q 000699 96 DSGVKVIVRMRPLNKEEN-EGEMIVQKVADDSLS-I---N-------GHTFTFDSVADMEATQLDVFQLVGVPLVENCLS 163 (1345)
Q Consensus 96 ~~~VkVvVRVRPl~~~E~-~g~~iV~~~s~~si~-v---~-------~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe 163 (1345)
...|.|+|||||++..+. .+..+.....++... . . ...|.||+||+++++|++||+..++|||++++.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 457999999999998742 222232222222221 1 1 278999999999999999999999999999999
Q ss_pred CCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceee
Q 000699 164 GFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQIT 243 (1345)
Q Consensus 164 GyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~ 243 (1345)
|||+||||||||||||||||.| ...++||||+++.+||..|... ....|.|.|||+|||||.|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G----------~~~~PGii~la~~dif~~I~~~------~~r~f~v~vSYlEIYNE~I~ 148 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSG----------SEDDPGIIPLAMKDIFEKIDKS------GEREFSVRVSYLEIYNERIR 148 (675)
T ss_pred CcccceeeecCCCCCCceEEec----------cCCCCCeeehHHHHHHHHHHhc------CCceeEEEEEEEEEeccccc
Confidence 9999999999999999999999 4567999999999999999752 26789999999999999999
Q ss_pred ecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCC
Q 000699 244 DLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGI 323 (1345)
Q Consensus 244 DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~ 323 (1345)
|||++....|.|++|+.+|++|.||+++.|.|.++++.+|..|..+|+++.|.+|..|||||+||+|.|.++.....
T Consensus 149 DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--- 225 (675)
T KOG0242|consen 149 DLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--- 225 (675)
T ss_pred cccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765422
Q ss_pred ceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCc
Q 000699 324 SRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNA 403 (1345)
Q Consensus 324 ~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNS 403 (1345)
. ..++|+|||||||||..+|++.|.|++||.+||+||++||+||++|++. ....||||||||||||||++|||||
T Consensus 226 -~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~---~~~~hipYRDSKLTRiLq~sLgGn~ 300 (675)
T KOG0242|consen 226 -S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEG---KRPRHIPYRDSKLTRLLQDSLGGNA 300 (675)
T ss_pred -c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccc---cccCCCCccccHHHHhchhhcCCCc
Confidence 1 6789999999999999999999999999999999999999999999862 2456999999999999999999999
Q ss_pred ceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhh--HHHHHHHHHHHHHHHHHHHhCCCC
Q 000699 404 KLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNYLREVIRQLRDELHRMKANGHN 471 (1345)
Q Consensus 404 KT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~--v~~Lr~~Ir~Lr~EL~~LK~~~~~ 471 (1345)
+|+|||||+|+..+++||.+||+||+|||.|++++.+|....+. +..++..|..|+.++..++.....
T Consensus 301 rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~ 370 (675)
T KOG0242|consen 301 RTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEP 370 (675)
T ss_pred cEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999876543 455678899999999998876543
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5.2e-78 Score=685.17 Aligned_cols=319 Identities=45% Similarity=0.690 Sum_probs=286.4
Q ss_pred CcEEEEEeCCCCcccc-CC-CcEEEEeCCCeeEE-----------------cCeeEEeceecCCCCChhHHHHhhchhhH
Q 000699 98 GVKVIVRMRPLNKEEN-EG-EMIVQKVADDSLSI-----------------NGHTFTFDSVADMEATQLDVFQLVGVPLV 158 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~-~g-~~iV~~~s~~si~v-----------------~~ktFtFD~VFd~~aSQedVFe~vv~PLV 158 (1345)
+|+|||||||++..|. .+ ..++....+..+.+ ..+.|+||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 5899999999998772 22 33444444333332 24789999999999999999999999999
Q ss_pred HHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEe
Q 000699 159 ENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIY 238 (1345)
Q Consensus 159 dsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIY 238 (1345)
+++++|||+||||||||||||||||+|+. .++|||||++++||..+.... ....|.|+|||+|||
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----------~~~Giipr~~~~LF~~i~~~~-----~~~~~~v~vS~~EIy 145 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTD----------SDPGLMVLTMKDLFDKIEERK-----DDKEFEVSLSYLEIY 145 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCC----------CCCchHHHHHHHHHHhhhhcc-----cCceEEEEEEEEEEE
Confidence 99999999999999999999999999953 568999999999999987532 357899999999999
Q ss_pred cceeeecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeecc
Q 000699 239 NEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKS 318 (1345)
Q Consensus 239 NEkV~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~ 318 (1345)
||+|+|||++....+.+++|+.++++|.|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|.|.+....
T Consensus 146 ne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~ 225 (338)
T cd01370 146 NETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRT 225 (338)
T ss_pred CCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecC
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccc
Q 000699 319 KADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQES 398 (1345)
Q Consensus 319 ~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDS 398 (1345)
. +.......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.... +..||||||||||+||+|+
T Consensus 226 ~-~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~~~~ipyR~SkLT~lL~d~ 302 (338)
T cd01370 226 A-SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--KNKHIPYRDSKLTRLLKDS 302 (338)
T ss_pred C-CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--CCCcCCCcCCHHHHHHHHh
Confidence 2 223456789999999999999999999999999999999999999999999986431 3589999999999999999
Q ss_pred cCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcc
Q 000699 399 LGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 399 LGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~I 434 (1345)
|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 303 Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 303 LGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-76 Score=676.07 Aligned_cols=314 Identities=40% Similarity=0.635 Sum_probs=281.7
Q ss_pred CcEEEEEeCCCCccccC--CCcEEEEeCCCeeEE-----------------cCeeEEeceecCCCCChhHHHHhhchhhH
Q 000699 98 GVKVIVRMRPLNKEENE--GEMIVQKVADDSLSI-----------------NGHTFTFDSVADMEATQLDVFQLVGVPLV 158 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~--g~~iV~~~s~~si~v-----------------~~ktFtFD~VFd~~aSQedVFe~vv~PLV 158 (1345)
+|+|||||||+...|.. ...++...++.++.+ ..+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 69999999999988733 234444444544443 24689999999999999999999999999
Q ss_pred HHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEe
Q 000699 159 ENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIY 238 (1345)
Q Consensus 159 dsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIY 238 (1345)
+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|+|||+|||
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----------~~~Gli~r~~~~lF~~~~~-----------~~v~~S~~EIy 140 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSP----------GDGGILPRSLDVIFNSIGG-----------YSVFVSYVEIY 140 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHHh-----------eeEEEEEEEEe
Confidence 99999999999999999999999999943 6789999999999998853 89999999999
Q ss_pred cceeeecCCCCC------CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEE
Q 000699 239 NEQITDLLDPSQ------RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1345)
Q Consensus 239 NEkV~DLL~p~~------~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~V 312 (1345)
||+|||||++.. ..+.+++|+.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|.|
T Consensus 141 ne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v 220 (345)
T cd01368 141 NNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKL 220 (345)
T ss_pred CCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEE
Confidence 999999998754 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCC----CCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCC-CCCCccCC
Q 000699 313 ESRCKSKAD----GISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTG-KQRHIPYR 387 (1345)
Q Consensus 313 e~~~~~~~d----g~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~-k~~hIPYR 387 (1345)
.+....... .......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++....+ +..|||||
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR 300 (345)
T cd01368 221 VQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYR 300 (345)
T ss_pred EEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCc
Confidence 876543211 1245678999999999999999999999999999999999999999999999865444 67899999
Q ss_pred CCccccccccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHh
Q 000699 388 DSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432 (1345)
Q Consensus 388 DSKLTrLLQDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK 432 (1345)
|||||+||||+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 301 ~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 301 DSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.3e-76 Score=675.39 Aligned_cols=331 Identities=47% Similarity=0.739 Sum_probs=296.6
Q ss_pred CCcEEEEEeCCCCccccC-CCcEEEEeCCCeeEE-----------cCeeEEeceecCCC-------CChhHHHHhhchhh
Q 000699 97 SGVKVIVRMRPLNKEENE-GEMIVQKVADDSLSI-----------NGHTFTFDSVADME-------ATQLDVFQLVGVPL 157 (1345)
Q Consensus 97 ~~VkVvVRVRPl~~~E~~-g~~iV~~~s~~si~v-----------~~ktFtFD~VFd~~-------aSQedVFe~vv~PL 157 (1345)
.+|+|+|||||++..|.. +...+....+..+.+ ..+.|.||+||++. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 369999999999987733 334444444455554 23589999999999 99999999999999
Q ss_pred HHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEE
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEI 237 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEI 237 (1345)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.... .....|.|+|||+||
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----------~~~Gli~r~~~~Lf~~~~~~~----~~~~~~~v~~S~~EI 146 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----------EEKGIIPRLCEELFQRIESKK----EQNLSYEVEVSYMEI 146 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHhhcc----ccCceEEEEEEEEEE
Confidence 999999999999999999999999999953 468999999999999986532 235789999999999
Q ss_pred ecceeeecCCCCC---CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEe
Q 000699 238 YNEQITDLLDPSQ---RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVES 314 (1345)
Q Consensus 238 YNEkV~DLL~p~~---~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~ 314 (1345)
|||+|||||++.. ..+.+++++.+|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+
T Consensus 147 y~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~ 226 (356)
T cd01365 147 YNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQ 226 (356)
T ss_pred ECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEE
Confidence 9999999998874 6799999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcC---CCCCCccCCCCcc
Q 000699 315 RCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQT---GKQRHIPYRDSRL 391 (1345)
Q Consensus 315 ~~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s---~k~~hIPYRDSKL 391 (1345)
.......+......|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|+..... ++..|||||+|||
T Consensus 227 ~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkL 306 (356)
T cd01365 227 KKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVL 306 (356)
T ss_pred EecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHH
Confidence 6554333345667899999999999999999999999999999999999999999999975432 3578999999999
Q ss_pred ccccccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceec
Q 000699 392 TFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVN 441 (1345)
Q Consensus 392 TrLLQDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVN 441 (1345)
|+||+|+||||++|+||+||||...+++||++||+||+|+++|+|.|++|
T Consensus 307 T~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 307 TWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999999999886
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.9e-75 Score=662.30 Aligned_cols=333 Identities=43% Similarity=0.664 Sum_probs=293.9
Q ss_pred CCcEEEEEeCCCCccccC-CC-cEEEEeCC-CeeEE--------cCeeEEeceecCCCCChhHHHHhhchhhHHHHhcCC
Q 000699 97 SGVKVIVRMRPLNKEENE-GE-MIVQKVAD-DSLSI--------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGF 165 (1345)
Q Consensus 97 ~~VkVvVRVRPl~~~E~~-g~-~iV~~~s~-~si~v--------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGy 165 (1345)
.+|+|+|||||+...|.. +. .++....+ ..+.+ ..+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 479999999999988743 22 33333322 34444 357899999999999999999999999999999999
Q ss_pred cccEeecCCCCCCcceeecCCCCCccc-cccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeee
Q 000699 166 NSSVFAYGQTGSGKTYTMWGPANALLE-ENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITD 244 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G~~~~~~~-~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~D 244 (1345)
|+||||||||||||||||+|+...... +......+|||||++++||..+... ...|.|+|||+|||||+|+|
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-------~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-------NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-------cceeEEEEEEEEeeCCeeee
Confidence 999999999999999999997643211 1123567999999999999998652 46899999999999999999
Q ss_pred cCCCC---CCCcceeec--CCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccC
Q 000699 245 LLDPS---QRNLQIRED--VKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSK 319 (1345)
Q Consensus 245 LL~p~---~~~L~IrED--~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~ 319 (1345)
||++. ...+.++++ ..+|++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|.|.+....
T Consensus 155 LL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~- 233 (352)
T cd01364 155 LLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT- 233 (352)
T ss_pred CCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC-
Confidence 99886 567999999 589999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCcccccccccc
Q 000699 320 ADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESL 399 (1345)
Q Consensus 320 ~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSL 399 (1345)
..+......|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+. +..|||||+|+||+||+|+|
T Consensus 234 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~-----~~~~vpyR~S~LT~lL~~~L 308 (352)
T cd01364 234 ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE-----KSPHIPYRESKLTRLLQDSL 308 (352)
T ss_pred CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc-----CCCCCCCcccHHHHHHHHhc
Confidence 2234456789999999999999999999999999999999999999999999985 44799999999999999999
Q ss_pred CCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecc
Q 000699 400 GGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNE 442 (1345)
Q Consensus 400 GGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe 442 (1345)
||||+|+||+||||...+++||++||+||+|+++|+|+|.+|.
T Consensus 309 gg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 309 GGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999999996
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4e-74 Score=649.34 Aligned_cols=305 Identities=38% Similarity=0.569 Sum_probs=274.5
Q ss_pred CcEEEEEeCCCCccccC-CC-cEEEEeCCCeeEEc-------------CeeEEeceecCCCCChhHHHHhhchhhHHHHh
Q 000699 98 GVKVIVRMRPLNKEENE-GE-MIVQKVADDSLSIN-------------GHTFTFDSVADMEATQLDVFQLVGVPLVENCL 162 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~-g~-~iV~~~s~~si~v~-------------~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvL 162 (1345)
+|+|+|||||+...|.. +. .++....++.+.+. .+.|+||+||+++++|++||+.++.|+|+.++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~ 81 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVF 81 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHh
Confidence 69999999999988742 22 23333333344432 47899999999999999999999999999999
Q ss_pred cCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEeccee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQI 242 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV 242 (1345)
+|||+||||||||||||||||+|+. .++|||||++++||..+.... ..|.|+|||+|||||+|
T Consensus 82 ~G~n~~i~ayGqtGSGKTyTm~G~~----------~~~Glipr~~~~lf~~~~~~~-------~~~~v~~S~~EIy~e~v 144 (322)
T cd01367 82 EGGVATCFAYGQTGSGKTYTMLGDE----------NQEGLYALAARDIFRLLAQPN-------DDLGVTVSFFEIYGGKL 144 (322)
T ss_pred CCCceEEEeccCCCCCCceEecCcC----------CcCccHHHHHHHHHHHHhccc-------cccEEEEEEEeeecCch
Confidence 9999999999999999999999943 678999999999999986431 57999999999999999
Q ss_pred eecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCC
Q 000699 243 TDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADG 322 (1345)
Q Consensus 243 ~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg 322 (1345)
+|||++ .+.+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|.|.....
T Consensus 145 ~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----- 218 (322)
T cd01367 145 FDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----- 218 (322)
T ss_pred hhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----
Confidence 999987 56799999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CceeeEEEEEEEeCCCCccccccC-cchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCC
Q 000699 323 ISRFKSSRINLVDLAGSERQKLTG-AAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGG 401 (1345)
Q Consensus 323 ~~~~k~SKL~LVDLAGSER~~kTg-a~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGG 401 (1345)
....|+|+|||||||||...++ ..+++++|+.+||+||++|++||.+|+. +..||||||||||+||||+|||
T Consensus 219 --~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~-----~~~~iPyRdSkLT~lL~~~L~g 291 (322)
T cd01367 219 --NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS-----NKAHVPFRGSKLTQVLRDSFIG 291 (322)
T ss_pred --CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc-----CCCcCCCccCHHHHHHHHhhCC
Confidence 3467999999999999998765 4689999999999999999999999985 3489999999999999999999
Q ss_pred CcceeEEEecCCCCCchHHHHHHHHHHHHHh
Q 000699 402 NAKLAMICAISPAQSCKSETFSTLRFAQRAK 432 (1345)
Q Consensus 402 NSKT~mIa~ISPs~~~~eETLSTLrFAsRAK 432 (1345)
||+|+|||||||...+++||++||+||+|+|
T Consensus 292 ~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 292 NSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.4e-73 Score=644.26 Aligned_cols=318 Identities=48% Similarity=0.780 Sum_probs=290.3
Q ss_pred CCcEEEEEeCCCCcccc--CCCcEEEEeCCCeeEEc----CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEe
Q 000699 97 SGVKVIVRMRPLNKEEN--EGEMIVQKVADDSLSIN----GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVF 170 (1345)
Q Consensus 97 ~~VkVvVRVRPl~~~E~--~g~~iV~~~s~~si~v~----~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIf 170 (1345)
.+|+|+|||||++..|. .+..++....+.++.+. .+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 47999999999998872 33456666666677775 5799999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCCC
Q 000699 171 AYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ 250 (1345)
Q Consensus 171 AYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~~ 250 (1345)
|||||||||||||+|+.. ....+|||||++++||..+... .....|.|++||+|||||+|+|||++..
T Consensus 82 ayG~tgSGKT~Tm~G~~~-------~~~~~Giipr~~~~Lf~~~~~~-----~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 149 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPG-------DPELKGIIPRIVHDIFEHISSM-----DENLEFHVKVSYLEIYMEKIRDLLDVSK 149 (325)
T ss_pred EeCCCCCCceEEecCCCC-------ccccCChHHHHHHHHHHHHhhc-----cCCceEEEEEEEEEEECCChhhcccCcc
Confidence 999999999999999653 2467899999999999998653 4566899999999999999999999988
Q ss_pred CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEE
Q 000699 251 RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSR 330 (1345)
Q Consensus 251 ~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SK 330 (1345)
..+.+++++.+|++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|.|.+.... ......|+
T Consensus 150 ~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~ 225 (325)
T cd01369 150 DNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGK 225 (325)
T ss_pred CCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999876432 12357899
Q ss_pred EEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEe
Q 000699 331 INLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICA 410 (1345)
Q Consensus 331 L~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~ 410 (1345)
|+|||||||||..++++.|.+++|+..||+||++|++||.+|+. ++..|||||+|+||+||+|+|||||+|+||+|
T Consensus 226 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~----~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~ 301 (325)
T cd01369 226 LFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTD----GKSTHIPYRDSKLTRILQDSLGGNSRTTLIIC 301 (325)
T ss_pred EEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHc----CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999985 34489999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcc
Q 000699 411 ISPAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 411 ISPs~~~~eETLSTLrFAsRAK~I 434 (1345)
|||...+++||++||+||+|||+|
T Consensus 302 vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 302 CSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred eCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999987
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.6e-73 Score=646.92 Aligned_cols=319 Identities=48% Similarity=0.760 Sum_probs=284.6
Q ss_pred CcEEEEEeCCCCccccC-CC-cEEEE-eCCCeeEE---------cCeeEEeceecCCCCChhHHHHhhchhhHHHHhcCC
Q 000699 98 GVKVIVRMRPLNKEENE-GE-MIVQK-VADDSLSI---------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGF 165 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~-g~-~iV~~-~s~~si~v---------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGy 165 (1345)
+|+|+|||||++..|.. +. .++.. .....+.+ ..+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY 81 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999987743 22 23222 22233333 246899999999999999999999999999999999
Q ss_pred cccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeec
Q 000699 166 NSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDL 245 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DL 245 (1345)
|+||||||||||||||||+|+.. ....+|||||++++||..+... ....|.|+|||+|||||+|+||
T Consensus 82 n~~i~ayG~tgSGKTyTm~G~~~-------~~~~~Glipr~~~~Lf~~~~~~------~~~~~~v~~S~~Eiy~e~v~DL 148 (333)
T cd01371 82 NGTIFAYGQTGTGKTFTMEGVRE-------PPELRGIIPNSFAHIFGHIAKA------ENVQFLVRVSYLEIYNEEVRDL 148 (333)
T ss_pred ceeEEecCCCCCCCcEeecCCCC-------cccccchHHHHHHHHHHHHhhc------cCccEEEEEEEEEeeCCeeeeC
Confidence 99999999999999999999653 3468999999999999988653 2368999999999999999999
Q ss_pred CCCCC-CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCc
Q 000699 246 LDPSQ-RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGIS 324 (1345)
Q Consensus 246 L~p~~-~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~ 324 (1345)
|++.. ..+.+++++.++++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|++..... ++..
T Consensus 149 L~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-~~~~ 227 (333)
T cd01371 149 LGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE-DGEN 227 (333)
T ss_pred CCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC-CCCC
Confidence 99876 579999999999999999999999999999999999999999999999999999999999998765432 3445
Q ss_pred eeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcc
Q 000699 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAK 404 (1345)
Q Consensus 325 ~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSK 404 (1345)
....|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+. ++..|||||+||||+||+|+|||||+
T Consensus 228 ~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~----~~~~~ipyR~SkLT~lL~~~l~g~s~ 303 (333)
T cd01371 228 HIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVD----GKSTHIPYRDSKLTRLLQDSLGGNSK 303 (333)
T ss_pred cEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHh----CCCCcCCCccCHHHHHHHHhcCCCce
Confidence 67789999999999999999999999999999999999999999999985 44569999999999999999999999
Q ss_pred eeEEEecCCCCCchHHHHHHHHHHHHHhcc
Q 000699 405 LAMICAISPAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 405 T~mIa~ISPs~~~~eETLSTLrFAsRAK~I 434 (1345)
|+||+||+|...+++||++||+||+|||.|
T Consensus 304 t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 304 TVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999987
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.3e-73 Score=644.13 Aligned_cols=307 Identities=38% Similarity=0.603 Sum_probs=280.3
Q ss_pred CcEEEEEeCCCCccccCCCcEEEEeCC-----CeeEE-------cCeeEEeceecCCCCChhHHHHhhchhhHHHHhcCC
Q 000699 98 GVKVIVRMRPLNKEENEGEMIVQKVAD-----DSLSI-------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGF 165 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~g~~iV~~~s~-----~si~v-------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGy 165 (1345)
+|+|+|||||+...|.....++..... .++.+ ..+.|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 80 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ 80 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999888555556555444 24443 246899999999999999999999999999999999
Q ss_pred cccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeec
Q 000699 166 NSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDL 245 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DL 245 (1345)
|+||||||||||||||||+|+. .++|||||++++||..+... ...|.|++||+|||||+|+||
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~----------~~~Glipr~~~~Lf~~~~~~-------~~~~~v~~S~~EIy~e~v~DL 143 (319)
T cd01376 81 NATVFAYGSTGAGKTHTMLGDP----------NEPGLIPRTLSDLLRMGRKQ-------AWTGAFSMSYYEIYNEKVYDL 143 (319)
T ss_pred ceEEEEECCCCCCCcEEEeCCc----------CccchHHHHHHHHHHHHhhc-------cccceEEEEEEEEECCEeeEc
Confidence 9999999999999999999953 47899999999999987542 267999999999999999999
Q ss_pred CCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCce
Q 000699 246 LDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISR 325 (1345)
Q Consensus 246 L~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~ 325 (1345)
|++....+.+++++.++++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|.|.+.... .
T Consensus 144 L~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------~ 217 (319)
T cd01376 144 LEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------I 217 (319)
T ss_pred cCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC------c
Confidence 9998888999999999999999999999999999999999999999999999999999999999999876321 2
Q ss_pred eeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcce
Q 000699 326 FKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1345)
Q Consensus 326 ~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT 405 (1345)
...|+|+|||||||||..+++..|.+++|+..||+||++||+||.+|+. +..|||||+|+||+||+|+|||||+|
T Consensus 218 ~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~-----~~~~ipyr~S~LT~lL~~~L~g~s~t 292 (319)
T cd01376 218 QLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK-----GLPRIPYRESKLTRLLQDSLGGGSRC 292 (319)
T ss_pred eEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc-----CCCcCCCccCHHHHHHHHhcCCCccE
Confidence 5789999999999999999999999999999999999999999999974 45899999999999999999999999
Q ss_pred eEEEecCCCCCchHHHHHHHHHHHHHh
Q 000699 406 AMICAISPAQSCKSETFSTLRFAQRAK 432 (1345)
Q Consensus 406 ~mIa~ISPs~~~~eETLSTLrFAsRAK 432 (1345)
+||+||||...+++|||+||+||+|||
T Consensus 293 ~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 293 IMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.3e-73 Score=646.00 Aligned_cols=327 Identities=44% Similarity=0.672 Sum_probs=290.2
Q ss_pred CcEEEEEeCCCCccccCC-C-cEEEEeC-CCeeEEc-CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecC
Q 000699 98 GVKVIVRMRPLNKEENEG-E-MIVQKVA-DDSLSIN-GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYG 173 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~g-~-~iV~~~s-~~si~v~-~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYG 173 (1345)
+|+|+||+||+...|... . .++.... +..+.+. .+.|.||+||+++++|++||+.++.|+|+.+++|||+||||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG 81 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYG 81 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeec
Confidence 699999999999887433 2 3333333 3355554 6899999999999999999999999999999999999999999
Q ss_pred CCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCC---C
Q 000699 174 QTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS---Q 250 (1345)
Q Consensus 174 QTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~---~ 250 (1345)
||||||||||+|+.... .....+|||||++++||+.+... .....|.|.|||+|||||+|+|||++. .
T Consensus 82 ~tgSGKT~Tm~G~~~~~----~~~~~~Giipr~~~~LF~~~~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 82 QTGSGKTYTMGTAFTAS----EDEEEVGIIPRAIQHIFKKIDEK-----KDEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred CCCCCCcEEecCCCccc----cccccCChHHHHHHHHHHHHHhc-----cccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 99999999999975321 24678999999999999998653 224689999999999999999999886 4
Q ss_pred CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccC------CCCCc
Q 000699 251 RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSK------ADGIS 324 (1345)
Q Consensus 251 ~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~------~dg~~ 324 (1345)
..+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... .++..
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 679999999999999999999999999999999999999999999999999999999999998876531 11334
Q ss_pred eeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcc
Q 000699 325 RFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAK 404 (1345)
Q Consensus 325 ~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSK 404 (1345)
....|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+... .+..|||||+|+||+||+|+||||++
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~--~~~~~ipyR~S~LT~lL~~~Lgg~s~ 310 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDES--KKGSHVPYRDSKLTRLLQDSLGGNSH 310 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcC--CCCCCCCCcccHHHHHHHHhcCCCce
Confidence 5678999999999999999999999999999999999999999999998643 24579999999999999999999999
Q ss_pred eeEEEecCCCCCchHHHHHHHHHHHHHhccc
Q 000699 405 LAMICAISPAQSCKSETFSTLRFAQRAKAIK 435 (1345)
Q Consensus 405 T~mIa~ISPs~~~~eETLSTLrFAsRAK~IK 435 (1345)
|+||+||||...+++|||+||+||+|||+||
T Consensus 311 t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 311 TLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999996
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.4e-73 Score=641.94 Aligned_cols=316 Identities=47% Similarity=0.748 Sum_probs=286.3
Q ss_pred CcEEEEEeCCCCccccCCCcEEEEeCCC-eeEEc----CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeec
Q 000699 98 GVKVIVRMRPLNKEENEGEMIVQKVADD-SLSIN----GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAY 172 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~g~~iV~~~s~~-si~v~----~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAY 172 (1345)
+|+|+||+||+...|..+..++....++ .+.+. .+.|.||+||+++++|++||+.++.|+|+++++|+|+|||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ay 80 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAY 80 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEee
Confidence 5899999999999876544444444443 66653 589999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCCCCC
Q 000699 173 GQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRN 252 (1345)
Q Consensus 173 GQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~~~~ 252 (1345)
|||||||||||+|+. .++|||||++++||..+... ....|.|+|||+|||||+|||||++....
T Consensus 81 G~tgSGKT~T~~G~~----------~~~Gli~r~~~~lf~~~~~~------~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 144 (321)
T cd01374 81 GQTSSGKTFTMSGDE----------QEPGIIPLAVRDIFQRIQDT------PDREFLLRVSYLEIYNEKIKDLLSPSPQE 144 (321)
T ss_pred cCCCCCCceeccCCC----------CCCchHHHHHHHHHHHHhcc------cCceEEEEEEEEEEEcCEeEEccCCCCCC
Confidence 999999999999943 57899999999999998642 25689999999999999999999999889
Q ss_pred cceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEEE
Q 000699 253 LQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRIN 332 (1345)
Q Consensus 253 L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL~ 332 (1345)
+.+++++.+|++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+..... .+......|+|+
T Consensus 145 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-~~~~~~~~s~l~ 223 (321)
T cd01374 145 LRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD-SESGTVRVSTLN 223 (321)
T ss_pred ceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC-CCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998875432 133456789999
Q ss_pred EEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEecC
Q 000699 333 LVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAIS 412 (1345)
Q Consensus 333 LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~IS 412 (1345)
|||||||||....+ .+.+++|+.+||+||++|++||.+|+.. .+..|||||+||||+||+++|||||+|+||||||
T Consensus 224 ~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~---~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vs 299 (321)
T cd01374 224 LIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEG---KNSGHIPYRDSKLTRILQPSLSGNARTAIICTIS 299 (321)
T ss_pred EEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhc---CCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999998 8999999999999999999999999862 2268999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHhcc
Q 000699 413 PAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 413 Ps~~~~eETLSTLrFAsRAK~I 434 (1345)
|...+++||++||+||+|+++|
T Consensus 300 p~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 300 PASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred CccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-72 Score=637.74 Aligned_cols=313 Identities=43% Similarity=0.649 Sum_probs=277.2
Q ss_pred CcEEEEEeCCCCccccCCCcEEEEeCCCeeEE---------------cCeeEEeceecCCCCChhHHHHhhchhhHHHHh
Q 000699 98 GVKVIVRMRPLNKEENEGEMIVQKVADDSLSI---------------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCL 162 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~g~~iV~~~s~~si~v---------------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvL 162 (1345)
+|+|+||+||+...+... +.....+..+.+ ..+.|.||+||++ ++|++||+.++.|+|++++
T Consensus 1 ~i~V~vRvRP~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~ 77 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS--IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSAL 77 (334)
T ss_pred CeEEEEECCCCCCCCCcc--EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHh
Confidence 489999999998854321 111111111111 2468999999999 9999999999999999999
Q ss_pred cCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEeccee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQI 242 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV 242 (1345)
+|+|+||||||||||||||||+|+.. ...++|||||++++||..++.. .+..|.|+|||+|||||+|
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~~-------~~~~~Glipr~~~~lf~~~~~~------~~~~~~v~~S~~Eiy~e~v 144 (334)
T cd01375 78 DGYNGTIFAYGQTGAGKTFTMTGGTE-------SYKDRGLIPRALEQVFREVAMR------ATKTYTVHVSYLEIYNEQL 144 (334)
T ss_pred CCCccceeeecCCCCCCeEEccCCCC-------cccCCchHHHHHHHHHHHHHhc------cCcceEEEEEEEEEECCEe
Confidence 99999999999999999999999653 3457899999999999998652 3568999999999999999
Q ss_pred eecCCCCC------CCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeee
Q 000699 243 TDLLDPSQ------RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRC 316 (1345)
Q Consensus 243 ~DLL~p~~------~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~ 316 (1345)
||||++.. ..+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..
T Consensus 145 ~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~ 224 (334)
T cd01375 145 YDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRS 224 (334)
T ss_pred ecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEe
Confidence 99998874 568999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccc
Q 000699 317 KSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQ 396 (1345)
Q Consensus 317 ~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQ 396 (1345)
.. .+......|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+. +...||||||||||+||+
T Consensus 225 ~~--~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~----~~~~~ipyRdSkLT~lL~ 298 (334)
T cd01375 225 RE--AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSE----KARTHVPYRNSKLTHVLR 298 (334)
T ss_pred cC--CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHh----CCCCCCCCcccHHHHHHH
Confidence 43 233456789999999999999999999999999999999999999999999985 235899999999999999
Q ss_pred cccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHh
Q 000699 397 ESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAK 432 (1345)
Q Consensus 397 DSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK 432 (1345)
|+|||||+|+||+||||...+++|||+||+||+|++
T Consensus 299 d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 299 DSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.8e-70 Score=619.67 Aligned_cols=317 Identities=46% Similarity=0.727 Sum_probs=285.1
Q ss_pred CCcEEEEEeCCCCccccCC-CcEEEEeCC--CeeEEc-----CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCccc
Q 000699 97 SGVKVIVRMRPLNKEENEG-EMIVQKVAD--DSLSIN-----GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSS 168 (1345)
Q Consensus 97 ~~VkVvVRVRPl~~~E~~g-~~iV~~~s~--~si~v~-----~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaT 168 (1345)
++|+|+||+||+...|... ..++..... ..+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|+|+|
T Consensus 2 ~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~~~~ 80 (329)
T cd01366 2 GNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGYNVC 80 (329)
T ss_pred CCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCCceE
Confidence 5799999999999887432 233333333 445443 36899999999999999999985 89999999999999
Q ss_pred EeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCC
Q 000699 169 VFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDP 248 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p 248 (1345)
|||||+|||||||||+|+. ..+|||||++++||..+.... .....|.|++||+|||||+|+|||++
T Consensus 81 i~ayG~tgSGKT~tl~G~~----------~~~Gli~r~~~~lf~~~~~~~----~~~~~~~v~~S~~EIy~e~v~DLL~~ 146 (329)
T cd01366 81 IFAYGQTGSGKTYTMEGPP----------ENPGIIPRALEQLFNTAEELK----EKGWSYTITASMLEIYNETIRDLLAT 146 (329)
T ss_pred EEEeCCCCCCCcEEecCCC----------CCCCcHHHHHHHHHHHHHhhh----ccCceEEEEEEEEEEECCEeEECCCC
Confidence 9999999999999999953 678999999999999987542 23578999999999999999999998
Q ss_pred C---CCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCce
Q 000699 249 S---QRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISR 325 (1345)
Q Consensus 249 ~---~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~ 325 (1345)
. ...+.+++++.++++|.|++++.|.|++|+.++|..|..+|.+++|.+|..|||||+||+|.|.+.... ...
T Consensus 147 ~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~ 222 (329)
T cd01366 147 KPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGE 222 (329)
T ss_pred CcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCc
Confidence 6 578999999999999999999999999999999999999999999999999999999999999876432 234
Q ss_pred eeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcce
Q 000699 326 FKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1345)
Q Consensus 326 ~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT 405 (1345)
...|+|+||||||+|+..++++.|.+++|+..||+||++|++||.+|+. +..|||||+|+||+||+|+|||+++|
T Consensus 223 ~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~-----~~~~ipyr~S~LT~lL~~~l~g~~~t 297 (329)
T cd01366 223 QTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS-----KDSHVPYRNSKLTYLLQDSLGGNSKT 297 (329)
T ss_pred EEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhc-----CCCcCCCcccHhHHHHHHhcCCCceE
Confidence 5789999999999999999999999999999999999999999999975 47899999999999999999999999
Q ss_pred eEEEecCCCCCchHHHHHHHHHHHHHhccccc
Q 000699 406 AMICAISPAQSCKSETFSTLRFAQRAKAIKNK 437 (1345)
Q Consensus 406 ~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNk 437 (1345)
+||+||||...+++||++||+||+|+++|++.
T Consensus 298 ~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 298 LMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.9e-69 Score=611.78 Aligned_cols=324 Identities=56% Similarity=0.838 Sum_probs=291.5
Q ss_pred CcEEEEEeCCCCccccC-CC-cEEEEeCCC--eeEEc-------CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCc
Q 000699 98 GVKVIVRMRPLNKEENE-GE-MIVQKVADD--SLSIN-------GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFN 166 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~-g~-~iV~~~s~~--si~v~-------~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyN 166 (1345)
+|+|+|||||+...|.. +. .++.....+ .+.+. .+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 58999999999988732 22 333333332 44442 478999999999999999999999999999999999
Q ss_pred ccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLL 246 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL 246 (1345)
+||||||+|||||||||+|+ ..++|||||++++||..+... .....|.|+|||+|||+|+|+|||
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~----------~~~~Gli~~~~~~Lf~~~~~~-----~~~~~~~v~~S~~ei~~e~v~DLL 145 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGT----------PDSPGIIPRALKDLFEKIDKL-----EEGWQFQVKVSYLEIYNEKIRDLL 145 (335)
T ss_pred eeEEEeCCCCCCCceEecCC----------CCCCCHHHHHHHHHHHHhhhc-----ccCceEEEEEEEEEEECCEEEECc
Confidence 99999999999999999995 356899999999999998643 235689999999999999999999
Q ss_pred CCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCcee
Q 000699 247 DPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRF 326 (1345)
Q Consensus 247 ~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~ 326 (1345)
++....+.+++++.+++++.|++++.|.|++|+.++|..|..+|.+++|.+|..|||||+||+|+|.+.... ......
T Consensus 146 ~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~ 223 (335)
T smart00129 146 NPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSG 223 (335)
T ss_pred CCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCE
Confidence 998889999999999999999999999999999999999999999999999999999999999999876433 233456
Q ss_pred eEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCccee
Q 000699 327 KSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1345)
Q Consensus 327 k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~ 406 (1345)
..|+|+||||||+||....++.|.+++|+..||+||.+|++||.+|++ .++..|||||+|+||+||+++|||+++|+
T Consensus 224 ~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~---~~~~~~ip~r~S~LT~lL~~~L~g~~~~~ 300 (335)
T smart00129 224 KASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALAD---GQKSRHIPYRDSKLTRLLQDSLGGNSKTL 300 (335)
T ss_pred EEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHh---cCCCCCCCCcCcHhHHHHHHHcCCCCeEE
Confidence 789999999999999999999999999999999999999999999986 34678999999999999999999999999
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhcccccceec
Q 000699 407 MICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVN 441 (1345)
Q Consensus 407 mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVN 441 (1345)
||+||||...+++||++||+||+|+++|+|+|++|
T Consensus 301 ~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 301 MIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.4e-70 Score=662.21 Aligned_cols=337 Identities=43% Similarity=0.625 Sum_probs=292.5
Q ss_pred CCCcEEEEEeCCCCccccCC-CcEEEEeCC-CeeEE---------cCeeEEeceecCCCCChhHHHHhhchhhHHHHhcC
Q 000699 96 DSGVKVIVRMRPLNKEENEG-EMIVQKVAD-DSLSI---------NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSG 164 (1345)
Q Consensus 96 ~~~VkVvVRVRPl~~~E~~g-~~iV~~~s~-~si~v---------~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeG 164 (1345)
.++|+|||||||+...+... ...+..... ..+.+ ..+.|.||+||+|.++|++||..+- |+|.++|+|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~-~lv~S~lDG 391 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVS-PLVQSALDG 391 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHH-HHHHHHhcC
Confidence 68899999999999887553 222222221 11222 1235999999999999999999976 999999999
Q ss_pred CcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeee
Q 000699 165 FNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITD 244 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~D 244 (1345)
||+||||||||||||||||.|+ .++++|||||+++.||..+... ..++.|.+.+||+|||||.|+|
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~---------~~~~~Giipral~~lF~~~~~~-----~~g~~y~~~~s~~EIYNe~i~D 457 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGP---------TPEDPGIIPRALEKLFRTITSL-----KSGWKYDKTVSMLEIYNEAIRD 457 (670)
T ss_pred cceeEEEecccCCCccccccCC---------CcccCCccHHHHHHHHHHHHhh-----ccCceEEeeeehhHHHHHHHHH
Confidence 9999999999999999999995 3467999999999999998754 2379999999999999999999
Q ss_pred cCCCC--CCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCC
Q 000699 245 LLDPS--QRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADG 322 (1345)
Q Consensus 245 LL~p~--~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg 322 (1345)
||++. ...+.|+.+..++.+|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|..... .
T Consensus 458 lL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~----~ 533 (670)
T KOG0239|consen 458 LLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE----L 533 (670)
T ss_pred hccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc----C
Confidence 99886 46799999999999999999999999999999999999999999999999999999999999976522 2
Q ss_pred CceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCC
Q 000699 323 ISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1345)
Q Consensus 323 ~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGN 402 (1345)
......+.|+|||||||||+.++++.|+|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||+
T Consensus 534 t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-----k~~HiPyRNSKLT~lLq~sLGG~ 608 (670)
T KOG0239|consen 534 TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-----KRSHIPYRNSKLTQLLQDSLGGD 608 (670)
T ss_pred cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-----cCCCCcccccchHHHhHhhhCCc
Confidence 2334678999999999999999999999999999999999999999999985 77899999999999999999999
Q ss_pred cceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHH
Q 000699 403 AKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIR 456 (1345)
Q Consensus 403 SKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir 456 (1345)
+||+|+++|||...++.||+++|+||.|++.+...+..-.....+...+...+.
T Consensus 609 sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~ 662 (670)
T KOG0239|consen 609 SKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQ 662 (670)
T ss_pred cceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhh
Confidence 999999999999999999999999999999999887765444333333333333
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-69 Score=622.39 Aligned_cols=332 Identities=36% Similarity=0.520 Sum_probs=288.0
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCCccccCC-CcEEEEe-CCCeeEE-------------cCeeEEeceecCCCCChhHHHH
Q 000699 87 PENLVPGVSDSGVKVIVRMRPLNKEENEG-EMIVQKV-ADDSLSI-------------NGHTFTFDSVADMEATQLDVFQ 151 (1345)
Q Consensus 87 p~~~~~~~~~~~VkVvVRVRPl~~~E~~g-~~iV~~~-s~~si~v-------------~~ktFtFD~VFd~~aSQedVFe 151 (1345)
|.....++.++.|.|+||.||++..|... +.-|+.+ +.+.+.+ .++.|.||++||+.++++.||.
T Consensus 198 pls~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYr 277 (676)
T KOG0246|consen 198 PLSMGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYR 277 (676)
T ss_pred ccccCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHH
Confidence 33334566788999999999999998432 2223322 4444433 3579999999999999999999
Q ss_pred hhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEE
Q 000699 152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCR 231 (1345)
Q Consensus 152 ~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~ 231 (1345)
.+++|||..+|+|.-+|+||||||||||||||.|..++. ......||.-++.+|+|..+..-. -....+.|+
T Consensus 278 fTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk----~q~~s~giya~aa~Dvf~~L~~p~----Y~~~~l~v~ 349 (676)
T KOG0246|consen 278 FTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGK----AQDCSKGIYALAARDVFRLLRQPT----YRKLDLKVY 349 (676)
T ss_pred HhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcc----cccccccchhhhhhHHHHHhcccc----hhhcceEEE
Confidence 999999999999999999999999999999999987652 244567999999999999886422 335689999
Q ss_pred EEEEEEecceeeecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEE
Q 000699 232 CSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCV 311 (1345)
Q Consensus 232 VSflEIYNEkV~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~ 311 (1345)
|||||||+.+|||||++ ...|.+.||.+..|.|.||++..|.+++|++.+|..|++.|++|.|..|..|||||+||+|.
T Consensus 350 ~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIi 428 (676)
T KOG0246|consen 350 VTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQII 428 (676)
T ss_pred EEEEEEeCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeee
Confidence 99999999999999987 55699999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCceeeEEEEEEEeCCCCcccccc-CcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCc
Q 000699 312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLT-GAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSR 390 (1345)
Q Consensus 312 Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER~~kT-ga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSK 390 (1345)
+.... .....|+|.||||||+||...| .+..++..||+.|||||+||..||+||.. ...|+|||.||
T Consensus 429 lr~~~-------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~-----nk~H~PFR~SK 496 (676)
T KOG0246|consen 429 LRKHG-------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR-----NKSHLPFRGSK 496 (676)
T ss_pred eecCC-------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC-----CCCCCCchhhh
Confidence 96421 1346799999999999997554 55667889999999999999999999964 56899999999
Q ss_pred cccccccccCC-CcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccce
Q 000699 391 LTFLLQESLGG-NAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAV 439 (1345)
Q Consensus 391 LTrLLQDSLGG-NSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpv 439 (1345)
||.+|+|||-| |++|+||+||||....++.||||||||+|+|.+.....
T Consensus 497 LTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 497 LTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999988 99999999999999999999999999999999865544
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.9e-68 Score=598.57 Aligned_cols=316 Identities=52% Similarity=0.810 Sum_probs=284.6
Q ss_pred CcEEEEEeCCCCccccCC-CcEEEEeCCCeeEEc---------CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcc
Q 000699 98 GVKVIVRMRPLNKEENEG-EMIVQKVADDSLSIN---------GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNS 167 (1345)
Q Consensus 98 ~VkVvVRVRPl~~~E~~g-~~iV~~~s~~si~v~---------~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNa 167 (1345)
+|+|+||+||+...|..+ ..++....++++.+. .+.|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 589999999998876333 344444444677664 3899999999999999999999999999999999999
Q ss_pred cEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCC
Q 000699 168 SVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLD 247 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~ 247 (1345)
||||||+|||||||||+|+. ..+|||||++++||..+.... .....|.|++||+|||+|+|+|||+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----------~~~Gli~~~~~~Lf~~~~~~~----~~~~~~~v~~S~~Ei~~e~v~DLL~ 146 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----------KDPGIIPRALEDLFNLIDERK----EKNKSFSVSVSYLEIYNEKVYDLLS 146 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHhhcc----ccCceEEEEEEEEEEECCEeEECCC
Confidence 99999999999999999943 678999999999999986532 1256899999999999999999999
Q ss_pred CC--CCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCce
Q 000699 248 PS--QRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISR 325 (1345)
Q Consensus 248 p~--~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~ 325 (1345)
+. ...+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+....... ..
T Consensus 147 ~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--~~ 224 (328)
T cd00106 147 PEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--RS 224 (328)
T ss_pred CCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC--cc
Confidence 97 888999999999999999999999999999999999999999999999999999999999999887553222 13
Q ss_pred eeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcce
Q 000699 326 FKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1345)
Q Consensus 326 ~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT 405 (1345)
...|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+... +..|||||+||||+||+|+|||+++|
T Consensus 225 ~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~---~~~~ip~r~SkLT~lL~~~l~g~~~t 301 (328)
T cd00106 225 IKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ---KKKHIPYRDSKLTRLLQDSLGGNSKT 301 (328)
T ss_pred EEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC---CCCcCCCcCcHHHHHHHHhcCCCCeE
Confidence 678999999999999999999999999999999999999999999998621 25899999999999999999999999
Q ss_pred eEEEecCCCCCchHHHHHHHHHHHHHh
Q 000699 406 AMICAISPAQSCKSETFSTLRFAQRAK 432 (1345)
Q Consensus 406 ~mIa~ISPs~~~~eETLSTLrFAsRAK 432 (1345)
+||+||+|...+++||++||+||+|||
T Consensus 302 ~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 302 LMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=8.7e-69 Score=605.50 Aligned_cols=317 Identities=50% Similarity=0.771 Sum_probs=273.8
Q ss_pred EeCCCCccccCCC-c-EEEEe----------CCCeeEEcCeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEee
Q 000699 104 RMRPLNKEENEGE-M-IVQKV----------ADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFA 171 (1345)
Q Consensus 104 RVRPl~~~E~~g~-~-iV~~~----------s~~si~v~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfA 171 (1345)
||||++..|.... . ++... .........+.|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999998884332 1 12111 1111112357899999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCC--
Q 000699 172 YGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPS-- 249 (1345)
Q Consensus 172 YGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~-- 249 (1345)
||+|||||||||+|+ .....+|||||++++||..+..... .....|.|+|||+|||||+|+|||++.
T Consensus 81 yG~tgSGKT~Tm~G~--------~~~~~~Gli~~~~~~lf~~~~~~~~---~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 149 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--------NDPSEPGLIPRALRDLFSQIEERKE---KSGYEFSVSVSYLEIYNEKVYDLLSPNNS 149 (335)
T ss_dssp EESTTSSHHHHHTBS--------TSTTTBSHHHHHHHHHHHHHHHHTT---TSTEEEEEEEEEEEEETTEEEETTSTTSS
T ss_pred ecccccccccccccc--------ccccccchhhhHHHHHhhhhccccc---cccccccccccchhhhhhhhhhhcCcccc
Confidence 999999999999995 1357899999999999999976421 114689999999999999999999987
Q ss_pred --CCCcceeecCCCC-eEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCcee
Q 000699 250 --QRNLQIREDVKSG-VYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRF 326 (1345)
Q Consensus 250 --~~~L~IrED~~~g-v~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~ 326 (1345)
...+.+++++..| ++|.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|.|.+.......+....
T Consensus 150 ~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~ 229 (335)
T PF00225_consen 150 KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESV 229 (335)
T ss_dssp STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEE
T ss_pred ccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccce
Confidence 3579999999876 9999999999999999999999999999999999999999999999999998765433322236
Q ss_pred eEEEEEEEeCCCCccccccCc-chhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcce
Q 000699 327 KSSRINLVDLAGSERQKLTGA-AGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1345)
Q Consensus 327 k~SKL~LVDLAGSER~~kTga-~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT 405 (1345)
..|+|+||||||+||..+.++ .+.+++|+..||+||.+|++||.+|+.. +...|||||+||||+||+|+|||||+|
T Consensus 230 ~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~SkLT~lL~d~l~g~s~t 306 (335)
T PF00225_consen 230 KHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDSKLTRLLKDSLGGNSKT 306 (335)
T ss_dssp EEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGSHHHHHTGGGTSSSSEE
T ss_pred eecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcccccceecccccccccc
Confidence 789999999999999999887 4889999999999999999999999862 357899999999999999999999999
Q ss_pred eEEEecCCCCCchHHHHHHHHHHHHHhcc
Q 000699 406 AMICAISPAQSCKSETFSTLRFAQRAKAI 434 (1345)
Q Consensus 406 ~mIa~ISPs~~~~eETLSTLrFAsRAK~I 434 (1345)
+||+||+|...+++||++||+||.|+|+|
T Consensus 307 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 307 ILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred eeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999987
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-66 Score=613.23 Aligned_cols=333 Identities=39% Similarity=0.612 Sum_probs=292.7
Q ss_pred CCCcEEEEEeCCCCc-cccCCCcEEEEeCCCeeEE----------------cCeeEEeceecCCCCChhHHHHhhchhhH
Q 000699 96 DSGVKVIVRMRPLNK-EENEGEMIVQKVADDSLSI----------------NGHTFTFDSVADMEATQLDVFQLVGVPLV 158 (1345)
Q Consensus 96 ~~~VkVvVRVRPl~~-~E~~g~~iV~~~s~~si~v----------------~~ktFtFD~VFd~~aSQedVFe~vv~PLV 158 (1345)
...|.||||+||+.. .+..+ |+...+..++.+ -.+.|.|.+||+++++|.+||+.++.|+|
T Consensus 30 ~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 567999999999884 33333 333333333332 13689999999999999999999999999
Q ss_pred HHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHh------------------
Q 000699 159 ENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIK------------------ 220 (1345)
Q Consensus 159 dsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k------------------ 220 (1345)
.+++.|.|..+|+||.|||||||||+|+ +..+||+||+++-||..|...+.+
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~----------~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGT----------PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecC----------CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 9999999999999999999999999994 467899999999999988642110
Q ss_pred -----------------------------------------hhcccceeEEEEEEEEEecceeeecCCCCCC------Cc
Q 000699 221 -----------------------------------------HADKQLNYQCRCSFLEIYNEQITDLLDPSQR------NL 253 (1345)
Q Consensus 221 -----------------------------------------~~~~~~~ysV~VSflEIYNEkV~DLL~p~~~------~L 253 (1345)
..+.+..|.|+|||+||||+-|||||.+... ..
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ 257 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLK 257 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhh
Confidence 0125678999999999999999999977532 26
Q ss_pred ceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEEEE
Q 000699 254 QIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINL 333 (1345)
Q Consensus 254 ~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL~L 333 (1345)
.+++|.++.+||.|+++|.|.+.+|++.+|+.|.++|++++|..|..|||||+||+|.|.+.... .+...++.|.|.|
T Consensus 258 ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~--~~s~~i~vSqlsL 335 (809)
T KOG0247|consen 258 LLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS--QDSNQITVSQLSL 335 (809)
T ss_pred hhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc--cccCceeEEeeee
Confidence 78899999999999999999999999999999999999999999999999999999999876554 2445678899999
Q ss_pred EeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEecCC
Q 000699 334 VDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISP 413 (1345)
Q Consensus 334 VDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~ISP 413 (1345)
||||||||..+|++.|.||+|+++||.||++||+||.+|......+.+.+|||||||||++++.+|.|..+++||.||+|
T Consensus 336 vDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp 415 (809)
T KOG0247|consen 336 VDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNP 415 (809)
T ss_pred eecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999887777899999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhcccccceecc
Q 000699 414 AQSCKSETFSTLRFAQRAKAIKNKAVVNE 442 (1345)
Q Consensus 414 s~~~~eETLSTLrFAsRAK~IKNkpvVNe 442 (1345)
...+|+|+|+.|+||.-+..|.+...++.
T Consensus 416 ~~e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 416 KAEDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred chhhHHHHHHHHHHHHhcccccccCcccc
Confidence 99999999999999999999988777654
No 28
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-67 Score=629.55 Aligned_cols=343 Identities=42% Similarity=0.605 Sum_probs=300.7
Q ss_pred eCCCCccc-cCCC-cEEEEe-CCCeeEE-cCeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcc
Q 000699 105 MRPLNKEE-NEGE-MIVQKV-ADDSLSI-NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKT 180 (1345)
Q Consensus 105 VRPl~~~E-~~g~-~iV~~~-s~~si~v-~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKT 180 (1345)
|||+...| ..|+ .|+... ....+.+ ...+|+||+||+....|.++|+.++.|+++.+|.|||+|++||||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkT 80 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKT 80 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCce
Confidence 68988776 3444 344422 2233444 467999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCCC--CCcceeec
Q 000699 181 YTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ--RNLQIRED 258 (1345)
Q Consensus 181 YTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~~--~~L~IrED 258 (1345)
|||.+.+.+ .....|||||++..||.+|...+ ...|.|.|||+|||++.|+|||.|.. .++.+++
T Consensus 81 ytmgt~~~~------~~~~~Gvipr~v~~~f~~i~~~~------~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e- 147 (913)
T KOG0244|consen 81 YTMGTNDAP------AQDTVGVIPRAVSTLFTRIGKTE------SFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE- 147 (913)
T ss_pred eeccccccc------ccccCCcCcchHHHHHHHHHhhh------ccceeeeeeeeeccchhhhhhcChhhhhhceeccc-
Confidence 999886543 22337999999999999997643 26899999999999999999998654 3578888
Q ss_pred CCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEEEEEeCCC
Q 000699 259 VKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAG 338 (1345)
Q Consensus 259 ~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL~LVDLAG 338 (1345)
+++++.+.|+++..|.+..+++..|..|.-.|++++|+||..|||||+|||+.+++..... ......+||+||||||
T Consensus 148 ~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~---~~s~~~sKlhlVDLAG 224 (913)
T KOG0244|consen 148 PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS---KRSSFCSKLHLVDLAG 224 (913)
T ss_pred cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh---ccchhhhhhheeeccc
Confidence 7888999999999999999999999999999999999999999999999999998754321 2224568999999999
Q ss_pred CccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEecCCCCCch
Q 000699 339 SERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCK 418 (1345)
Q Consensus 339 SER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~ISPs~~~~ 418 (1345)
|||.++|++.|+|++||.+||.+|++||+||+||.+.. +..|||||||||||||||+||||+.|+||+||||+..+.
T Consensus 225 SER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~k---k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~ 301 (913)
T KOG0244|consen 225 SERVKKTKAEGDRLKEGININGGLLALGNVISALGEAK---KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNA 301 (913)
T ss_pred cccccccccchhhhhhccCcchHHHHHHHHHHHHHhhh---cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhh
Confidence 99999999999999999999999999999999999743 367999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccceecccc-hhhHHHHHHHHHHHHHHHHHHH
Q 000699 419 SETFSTLRFAQRAKAIKNKAVVNEVM-QDDVNYLREVIRQLRDELHRMK 466 (1345)
Q Consensus 419 eETLSTLrFAsRAK~IKNkpvVNe~~-~~~v~~Lr~~Ir~Lr~EL~~LK 466 (1345)
+|||+||+||.||+.|+|+|++|.++ ...++.|+.+|+.|+.+|...+
T Consensus 302 ~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 302 QETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999954 3457889999999999998776
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-61 Score=577.16 Aligned_cols=343 Identities=44% Similarity=0.655 Sum_probs=293.7
Q ss_pred CCCcEEEEEeCCCCccccCCCcEEEEeCCCeeEE---c-CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEee
Q 000699 96 DSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSI---N-GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFA 171 (1345)
Q Consensus 96 ~~~VkVvVRVRPl~~~E~~g~~iV~~~s~~si~v---~-~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfA 171 (1345)
-..++++++..|-...+ .+....+..... . ..+|.||+||++.++|++||+.++.|+++.++.|||+||||
T Consensus 21 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tvfa 95 (568)
T COG5059 21 VSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFA 95 (568)
T ss_pred ecCceEEEeecCCCcch-----heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEE
Confidence 45689999999854432 122222222111 1 45799999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecceeeecCCCCCC
Q 000699 172 YGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQR 251 (1345)
Q Consensus 172 YGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~DLL~p~~~ 251 (1345)
||||||||||||.|. ...+||||+++.+||..+.... ....|.|.|||+|||||+++|||.+...
T Consensus 96 yGqTgsgKtyt~~G~----------~~~~Gii~~~l~~lf~~l~~~~-----~~~~~~v~is~lEiYnEk~~DLl~~~~~ 160 (568)
T COG5059 96 YGQTGSGKTYTMSGT----------EEEPGIIPLSLKELFSKLEDLS-----MTKDFAVSISYLEIYNEKIYDLLSPNEE 160 (568)
T ss_pred EcccCCCceeEeecC----------ccccchHHHHHHHHHHHHHhcc-----cCcceeeEeehhHHHhhHHHhhccCccc
Confidence 999999999999994 3679999999999999997643 2568999999999999999999998877
Q ss_pred CcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEE
Q 000699 252 NLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRI 331 (1345)
Q Consensus 252 ~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL 331 (1345)
.+.++++...+++|.|+++..+.+.+|++.+|.+|..+|+++.|.+|..|||||+||++.+.+..... .....++|
T Consensus 161 ~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~----~~~~~~~l 236 (568)
T COG5059 161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS----GTSETSKL 236 (568)
T ss_pred cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc----cceecceE
Confidence 78899999999999999999999999999999999999999999999999999999999998775432 12234799
Q ss_pred EEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCccccccccccCCCcceeEEEec
Q 000699 332 NLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAI 411 (1345)
Q Consensus 332 ~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKLTrLLQDSLGGNSKT~mIa~I 411 (1345)
+||||||||+...+++.+.|++|+..||+||++||+||++|.+ .++..|||||+||||||||++|||+++|+|||||
T Consensus 237 ~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~---~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~I 313 (568)
T COG5059 237 SLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGD---KKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTI 313 (568)
T ss_pred EEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhc---cccCCccchhhhHHHHHHHHhcCCCccEEEEEEE
Confidence 9999999999999999999999999999999999999999986 2567899999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccccceecc--cchhhHHHHHHHHHHHHHHHHHH
Q 000699 412 SPAQSCKSETFSTLRFAQRAKAIKNKAVVNE--VMQDDVNYLREVIRQLRDELHRM 465 (1345)
Q Consensus 412 SPs~~~~eETLSTLrFAsRAK~IKNkpvVNe--~~~~~v~~Lr~~Ir~Lr~EL~~L 465 (1345)
+|...++++|.+||+||.||+.|+|++.+|. .....+..++..+-..+.+...+
T Consensus 314 sp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 369 (568)
T COG5059 314 SPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEIL 369 (568)
T ss_pred cCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhH
Confidence 9999999999999999999999999999995 22233333444444444444333
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.9e-49 Score=411.40 Aligned_cols=179 Identities=54% Similarity=0.826 Sum_probs=166.3
Q ss_pred HHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhccccee
Q 000699 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNY 228 (1345)
Q Consensus 149 VFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~y 228 (1345)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .++|||||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----------~~~Giip~~~~~------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----------EGAGIIPRTVTD------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC----------CCCCcchHHHHH-------------------
Confidence 999999 99999999999999999999999999999953 578999999877
Q ss_pred EEEEEEEEEecceeeecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 000699 229 QCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVF 308 (1345)
Q Consensus 229 sV~VSflEIYNEkV~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIF 308 (1345)
++.+|..|.++|+++.|.+|..|||||+||
T Consensus 58 --------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~ 87 (186)
T cd01363 58 --------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVF 87 (186)
T ss_pred --------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEE
Confidence 889999999999999999999999999999
Q ss_pred EEEEEeeeccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCC
Q 000699 309 TCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRD 388 (1345)
Q Consensus 309 tI~Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRD 388 (1345)
+|+|.+..... .+......|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|++ ++.|||||+
T Consensus 88 ~i~v~~~~~~~-~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~-----~~~~vpyr~ 161 (186)
T cd01363 88 RIHFGGKNALA-SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE-----RDSHVPYRE 161 (186)
T ss_pred EEEEEEeecCC-CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc-----CCCCCCCcc
Confidence 99998775532 233456789999999999999999999999999999999999999999999985 568999999
Q ss_pred CccccccccccCCCcceeEEEecCC
Q 000699 389 SRLTFLLQESLGGNAKLAMICAISP 413 (1345)
Q Consensus 389 SKLTrLLQDSLGGNSKT~mIa~ISP 413 (1345)
||||+||||+|||||+|+||+||||
T Consensus 162 SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 162 SKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred cHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999998
No 31
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=99.83 E-value=5.3e-21 Score=179.17 Aligned_cols=86 Identities=48% Similarity=0.779 Sum_probs=85.0
Q ss_pred hHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHH
Q 000699 943 REDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQ 1022 (1345)
Q Consensus 943 re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~ 1022 (1345)
|||||.|||++++|.+|++.|+.+|+..|++|+++|+++|++||+|++++.|+.+++||+.+|++||+.||||+|++||+
T Consensus 1 REdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis 80 (86)
T PF12711_consen 1 REDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEIS 80 (86)
T ss_pred CchHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000699 1023 DLRSQL 1028 (1345)
Q Consensus 1023 ~Lr~ql 1028 (1345)
.||+||
T Consensus 81 ~L~~~l 86 (86)
T PF12711_consen 81 ELRDQL 86 (86)
T ss_pred HHHhhC
Confidence 999986
No 32
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.18 E-value=2.2e-09 Score=136.47 Aligned_cols=245 Identities=22% Similarity=0.289 Sum_probs=185.4
Q ss_pred hhhhhh-hhhhhhhHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhc
Q 000699 931 HERECN-SIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFY 1009 (1345)
Q Consensus 931 ~~~e~~-~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~ 1009 (1345)
.||||+ +.|.++| .+|+.++||.+|++ +.++.+|+-+|.+||+++. ++.++||+++.
T Consensus 986 ~ErEvll~eI~dlr----~qL~~~~d~s~~s~----------~~~~~~l~l~y~~~~~~~~---~~~~i~e~~~~----- 1043 (1320)
T PLN03188 986 GEREVLLEEIQDLR----SQLQYYIDSSLPSA----------RKRNSLLKLTYSCEPSQAP---PLNTIPESTDE----- 1043 (1320)
T ss_pred hhHHHHHHHHHHHH----HHHHhhcccccchh----------hhccchhhhhhhcCccccc---ccccccccccc-----
Confidence 689999 9999999 59999999999983 6799999999999999888 88999999886
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhh
Q 000699 1010 DLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGW 1089 (1345)
Q Consensus 1010 d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~w 1089 (1345)
-.|+++++++|+.++++++.++ . + .+-|+|+|+ |
T Consensus 1044 -~~e~~l~~er~~w~e~es~wis-l--t-----------------------------------------eelr~eles-~ 1077 (1320)
T PLN03188 1044 -SPEKKLEQERLRWTEAESKWIS-L--A-----------------------------------------EELRTELDA-S 1077 (1320)
T ss_pred -chhHHHHHHHHHHHHHhhhhee-c--h-----------------------------------------HHHHHHHHH-H
Confidence 3499999999999999998743 0 0 356999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000699 1090 ISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQ---MAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDV 1166 (1345)
Q Consensus 1090 IslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~---~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~v 1166 (1345)
++|+|+||+||++.++.+|.|+- =|.-||+ |-++-.|-+=|-|.+|-+||....+- |-+-=.-.
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~----------a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~eg---i~dvkkaa 1144 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKE----------AMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEG---IDDVKKAA 1144 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 99999999999999999998764 4556886 77889999999999999999887653 33333334
Q ss_pred HHHHHH-hcccCchhhHHH---HHHHHH----HHHHHHHHHHHHHHHhhhhh------hhHhhhchHHHHHhhhhhhhhh
Q 000699 1167 KKAAAK-AGVRGAESKFIN---VLAAEI----SALKVAREKERQYLRDENKG------LQAQLRDTAEAVQAAGELLVRL 1232 (1345)
Q Consensus 1167 k~aaak-ag~kg~~~~f~~---~laae~----s~lr~ereker~~l~~en~~------l~~qlrdtaeav~aagellvrl 1232 (1345)
=||..| ||.|=+ ..+|. +|-+|= --||-|-..=+-+|||--.. |=..||+.-||+..|
T Consensus 1145 akag~kg~~~~f~-~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a------- 1216 (1320)
T PLN03188 1145 ARAGVRGAESKFI-NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA------- 1216 (1320)
T ss_pred HHhccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 455555 565543 24444 455553 33444444445566665443 556899999998765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhh
Q 000699 1233 KEAEEAVAAARKRAMEAEQETVTAYKQ----IDQLKKKH 1267 (1345)
Q Consensus 1233 ~eaeea~~~a~~~~~~~~qe~~k~~~q----~~klk~kh 1267 (1345)
++-+..|+.-+..+-++.+|||+. |.-||.-+
T Consensus 1217 ---~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1217 ---QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677778888888754 55666644
No 33
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.00 E-value=6.1e-08 Score=119.13 Aligned_cols=247 Identities=28% Similarity=0.334 Sum_probs=150.8
Q ss_pred CCCCcEEEEEeCCCCccccCC----------CcE---EEEeCCCeeEEcCeeEEeceecCCCCChhHHHHhhchhhHHHH
Q 000699 95 SDSGVKVIVRMRPLNKEENEG----------EMI---VQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENC 161 (1345)
Q Consensus 95 ~~~~VkVvVRVRPl~~~E~~g----------~~i---V~~~s~~si~v~~ktFtFD~VFd~~aSQedVFe~vv~PLVdsv 161 (1345)
+..+++|+|+|+|......+. ..+ +.......+...-..|.||.+|.....+..++.... -+++..
T Consensus 303 G~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~ 381 (568)
T COG5059 303 GNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQS-QLSQSS 381 (568)
T ss_pred CCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHH-hhhhhh
Confidence 345899999999987543111 011 110000112222357999999999999999988765 467777
Q ss_pred hcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEEEEEEEEecce
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQ 241 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~VSflEIYNEk 241 (1345)
+.| +++||++++|+++||.- ...++..-.+..+|..+.... ...+.+...+-++++|-..
T Consensus 382 ~~~----~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 382 LSG----IFAYMQSLKKETETLKS------------RIDLIMKSIISGTFERKKLLK----EEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred hhh----HHHHHhhhhhhhhcccc------------hhhhhhhhhhhhhhhhhhhhh----hhHHHHHHHHHHHHHHHHH
Confidence 777 99999999999999953 345666666677777665433 2233444444455565222
Q ss_pred eeecCCCCCC-Cc-ceeecCCC-CeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeecc
Q 000699 242 ITDLLDPSQR-NL-QIREDVKS-GVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKS 318 (1345)
Q Consensus 242 V~DLL~p~~~-~L-~IrED~~~-gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~ 318 (1345)
..+++..... .. .+...... ...+..++ .......+..... .....+..+.+.+|..++|+|.+|..........
T Consensus 442 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 519 (568)
T COG5059 442 LLLLREEELSKKKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS 519 (568)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh
Confidence 2222211110 00 00000000 00000000 0011111111111 4577888999999999999999998766432211
Q ss_pred CCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHH
Q 000699 319 KADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINIL 372 (1345)
Q Consensus 319 ~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~AL 372 (1345)
. + .. . +++|||||+||. .+...|.++++..++|++|..+|.+|.++
T Consensus 520 ~--~--~~--~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~ 565 (568)
T COG5059 520 T--K--EL--S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHAL 565 (568)
T ss_pred h--H--HH--H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhc
Confidence 1 0 01 1 799999999999 89999999999999999999999999876
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=97.09 E-value=2 Score=56.35 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000699 1095 ELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKA 1173 (1345)
Q Consensus 1095 eLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaaka 1173 (1345)
+++..|+..+.-.+.++.||. ++..++.-|...=..+-+.+.+|++.+..|-.++-.+..-+...+++-..+
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~-------el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIE-------ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 333333333322223344556777777777777766666666555554443
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.05 E-value=1.9 Score=58.68 Aligned_cols=82 Identities=32% Similarity=0.331 Sum_probs=45.3
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000699 1075 FEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1075 le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~ 1154 (1345)
++.-+..|....-.|--++. ...+|+....+......++..+..=.++-.++++-.+..+...++.+.++.+.+..+.+
T Consensus 276 ~~e~~~~~~~~~~~~~~~~~-~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 354 (1163)
T COG1196 276 LEELREELEELQEELLELKE-EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444445544444 44566666666666666666665555555556666677777766666444444444443
Q ss_pred HHH
Q 000699 1155 RHR 1157 (1345)
Q Consensus 1155 ~hr 1157 (1345)
...
T Consensus 355 ~~~ 357 (1163)
T COG1196 355 ELE 357 (1163)
T ss_pred HHH
Confidence 333
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.84 E-value=0.71 Score=63.70 Aligned_cols=190 Identities=20% Similarity=0.201 Sum_probs=120.5
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCV------EELHEAMQMAMEGNARMLEQYADLEEKH 1149 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~------eel~~al~~a~~ghar~~e~y~~l~ek~ 1149 (1345)
+.+...|.+--.++...-++++.++..++...+.++ ..+.-|. +||.+-+.--=.=.+.+-+++.+|++++
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le---~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL 465 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE---RAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL 465 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333444444555555555444443332 2233443 7777766665555566777777888888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHH---------HHHH-------HHHHHHHHHHH---HHHHHHHhhhhh
Q 000699 1150 IQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFI---------NVLA-------AEISALKVARE---KERQYLRDENKG 1210 (1345)
Q Consensus 1150 ~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~---------~~la-------ae~s~lr~ere---ker~~l~~en~~ 1210 (1345)
.++-+.+.........+-+.+-+--...|...|. ..|| +.++.|+-.-+ +=.+.|.+=++.
T Consensus 466 ~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~ 545 (1486)
T PRK04863 466 SVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKR 545 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776666666555443322222222222 2333 34444444222 222456667777
Q ss_pred hhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1211 LQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1211 l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
+..++-|..+..+-+.++=-+|-++++....+-++.+.++|+-+.|.++|.+|.+++-
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap 603 (1486)
T PRK04863 546 LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 8888888888888888999999999999999999999999999999999999998764
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.67 E-value=3.4 Score=55.12 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1231 RLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKK 1265 (1345)
Q Consensus 1231 rl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1265 (1345)
++++++......+.....++.+..++..++..++.
T Consensus 463 ~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~ 497 (1164)
T TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.19 E-value=1.6 Score=59.53 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=113.9
Q ss_pred HHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHH
Q 000699 996 KRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKF 1075 (1345)
Q Consensus 996 k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 1075 (1345)
..++.+++....-|. +..+++.++..|+..|.+...... ...+.++ ..-......+
T Consensus 242 ~~~r~~~~~l~~~~~--~l~~~~~~L~~l~~~l~~~~~~~~----~~~~~~~------------------~~~~~~~~~~ 297 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYR--QLQALEQQLCHLHAELNADEQQLE----QEQPELK------------------EELNELNEEL 297 (1201)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHH------------------HHHHHHHHHH
Confidence 344555554444444 667788888888888876553311 1111111 0001123345
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQE-----------LEAEKKCVEELHEAMQMAMEGNARMLEQYAD 1144 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~e-----------l~~ek~c~eel~~al~~a~~ghar~~e~y~~ 1144 (1345)
++....|.+.--+|-.-.+.++.+|..-...-.+++.. +...-.+-.++.+-++..-.=|.-+.+.|.|
T Consensus 298 ~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~d 377 (1201)
T PF12128_consen 298 EKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQD 377 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544433333221 1112223346666666666666777777777
Q ss_pred HHHHHHHHHHH--------HHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhh
Q 000699 1145 LEEKHIQLLAR--------HRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALK-------VAREKERQYLRDENK 1209 (1345)
Q Consensus 1145 l~ek~~~l~~~--------hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr-------~ereker~~l~~en~ 1209 (1345)
++.||+.+.++ +..+.+.+++++.+.+++ =.++-+++.+=...+| .+..-++..++.+..
T Consensus 378 i~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (1201)
T PF12128_consen 378 IESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAER-----REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELA 452 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765433 222222333333332222 0112222222111111 222222222333333
Q ss_pred hhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 000699 1210 GLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVST 1273 (1345)
Q Consensus 1210 ~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t 1273 (1345)
.|+.|+.. +..-=|+.-+++.++.++..|++....+.+....+..+..+++++.+.--.+
T Consensus 453 ~l~~~~~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 512 (1201)
T PF12128_consen 453 ELKQQLKN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEE 512 (1201)
T ss_pred HHHHHHhC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333321 1112234445555666666677777777776666666666666665543333
No 39
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.82 E-value=8.5 Score=48.97 Aligned_cols=143 Identities=29% Similarity=0.342 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Q 000699 1120 CVEELHEAMQMAMEGNARMLEQ----YADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKV 1195 (1345)
Q Consensus 1120 c~eel~~al~~a~~ghar~~e~----y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ 1195 (1345)
--++|..+|+++=+.-||==.+ .-|||-+ |-+-.||-.+-|..|=- -.+ .=.|-|.+|-+=++.--.
T Consensus 588 qv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR---lqaaE~R~eel~q~v~~-----TTr-PLlRQIE~lQ~tl~~~~t 658 (961)
T KOG4673|consen 588 QVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR---LQAAERRCEELIQQVPE-----TTR-PLLRQIEALQETLSKAAT 658 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccc-----ccc-HHHHHHHHHHHHHhhhhh
Confidence 3456777777766666653222 2234333 33455555666665510 000 123567788877777777
Q ss_pred HHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhh-------------hHHHHHHH-----HHHHHHHHHHHHH---
Q 000699 1196 AREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLK-------------EAEEAVAA-----ARKRAMEAEQETV--- 1254 (1345)
Q Consensus 1196 ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~-------------eaeea~~~-----a~~~~~~~~qe~~--- 1254 (1345)
--|||-+.|-+-.-.-|.+||--.+--|++-+=|.|+| +||.+.-. +..|+.+.+||+-
T Consensus 659 awereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~q 738 (961)
T KOG4673|consen 659 AWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQ 738 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77887777766666668888877766677777777765 56665321 2234444444443
Q ss_pred -----------HHHHHHHHHhhhhhhhH
Q 000699 1255 -----------TAYKQIDQLKKKHEMEV 1271 (1345)
Q Consensus 1255 -----------k~~~q~~klk~kh~~e~ 1271 (1345)
.+...+-++|++|+++.
T Consensus 739 eE~~~l~~r~~~le~e~r~~k~~~~q~l 766 (961)
T KOG4673|consen 739 EEADTLEGRANQLEVEIRELKRKHKQEL 766 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556677777653
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.64 E-value=3.8 Score=51.33 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=76.8
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLAR 1155 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~ 1155 (1345)
+...+.|..---....+...|.-+.+.-|...++++.+|..+++=.++|..-.+-....|..+.+....|...+.++-+|
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444434457778888999999999999999999999998888888888888888888999999999999888888
Q ss_pred HHHHHhhHHHHHHHH
Q 000699 1156 HRKIQEGIEDVKKAA 1170 (1345)
Q Consensus 1156 hr~i~~gi~~vk~aa 1170 (1345)
=+..-+-|..++.-.
T Consensus 222 i~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 222 IRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887665
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.63 E-value=13 Score=49.66 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.6
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
..+-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4567899999999887
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.52 E-value=12 Score=51.21 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHhhhc
Q 000699 1141 QYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAR---EKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1141 ~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~er---eker~~l~~en~~l~~qlrd 1217 (1345)
+...|++.+..+-..++++++.++++..+...++ +=+.+|..++..++..+ ++|.+.+.++...++.++..
T Consensus 773 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~ 846 (1163)
T COG1196 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAE------RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888899999999988888877 23455666666666553 34445555555555555554
Q ss_pred hHHHH
Q 000699 1218 TAEAV 1222 (1345)
Q Consensus 1218 taeav 1222 (1345)
..+++
T Consensus 847 l~~~~ 851 (1163)
T COG1196 847 LEEEL 851 (1163)
T ss_pred HHHhH
Confidence 44443
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.31 E-value=12 Score=47.23 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHH----hhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhh
Q 000699 1144 DLEEKHIQLLARHRKIQ----EGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDEN--------KGL 1211 (1345)
Q Consensus 1144 ~l~ek~~~l~~~hr~i~----~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en--------~~l 1211 (1345)
|+|-+-.+|+.+-.-+. .-|.+..+-+++.=..+.---|-+=|++=|--+|++-|.=+..=|++- ..+
T Consensus 201 d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i 280 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEI 280 (546)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555555544444 568888888888877554334999999999999998887665555532 222
Q ss_pred hHhhhchHHHHHhhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000699 1212 QAQLRDTAEAVQAAGELLVRLKEAEEA----VAAARKRAMEAEQETVTAYKQIDQLKKKHEM 1269 (1345)
Q Consensus 1212 ~~qlrdtaeav~aagellvrl~eaeea----~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~ 1269 (1345)
+.+---....+..|=|=|.|+|.-=-. ++-.+.+-...++..+.|+-|++.-+|-|+.
T Consensus 281 ~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~ 342 (546)
T KOG0977|consen 281 RTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ 342 (546)
T ss_pred HhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh
Confidence 322222223333444555555432111 1222334444445555555555555555544
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.25 E-value=17 Score=48.72 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1242 ARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1242 a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
++.+...++.+...+..++.+++.+
T Consensus 467 ~~~~l~~~~~~l~~l~~~l~~l~~~ 491 (1164)
T TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRE 491 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.18 E-value=25 Score=50.25 Aligned_cols=179 Identities=19% Similarity=0.281 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000699 1133 EGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAE-SKFINVLAAEISALKVAREKERQYLRDENKGL 1211 (1345)
Q Consensus 1133 ~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~-~~f~~~laae~s~lr~ereker~~l~~en~~l 1211 (1345)
..++.+=+|+-+|+..+-.|..-++..+..++|+--.+...+..+.+ .+|.+.+=+.|+.|+..=..=-+.+.+ |
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~----l 1264 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND----L 1264 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 35567778888999999999999999999999999988876655533 368888888888887732221111111 1
Q ss_pred hHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCcccCCcc
Q 000699 1212 QAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPA 1291 (1345)
Q Consensus 1212 ~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~~~~ 1291 (1345)
- ..+..=-.=+|+|.=+|-|+|--+..+.+-...+..+.+.++.|++.--|.+-.--.++.++=-| -..|+--
T Consensus 1265 ~---~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e----~~~l~e~ 1337 (1930)
T KOG0161|consen 1265 T---AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE----LDLLREQ 1337 (1930)
T ss_pred H---HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 1 11222223367888888888887788877777777777777777766544443333333333222 2222333
Q ss_pred ccCCcccccCCC--CCCCCCchHHHHHHHhhhc
Q 000699 1292 FDDSSMAKYDVE--EEPHSAGDQQWREEFQQFY 1322 (1345)
Q Consensus 1292 ~~~~~~~~~~~~--~~~~~~~dq~wr~ef~~~~ 1322 (1345)
|.++..+.++-. ..-.....++||..|+..-
T Consensus 1338 leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~ 1370 (1930)
T KOG0161|consen 1338 LEEEQEAKNELERKLSKANAELAQWKKKFEEEV 1370 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222221000 0002356789999987543
No 46
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.91 E-value=16 Score=52.06 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHH
Q 000699 1106 LAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINV 1185 (1345)
Q Consensus 1106 ~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~ 1185 (1345)
--|....++..||-|++.=-.-|+-+|.| +=|+|+.|...=..|-++|+..++-|..-++.|..+-+.++ -
T Consensus 947 ~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~---~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~------k 1017 (1930)
T KOG0161|consen 947 ELELTLQKLELEKNAAENKLKNLEEEINS---LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKA------K 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 33455567777888877666666666666 77888888877777889999999988888777766554442 2
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1186 LAAEISAL----------KVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVT 1255 (1345)
Q Consensus 1186 laae~s~l----------r~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k 1255 (1345)
|=..|..+ |.|.||..+-|.-+++.+|-++.+ .... --+|-..|+-.|.-+...+.+..+...+..+
T Consensus 1018 le~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~-~~~~--~~el~~~l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE-LKKQ--KEELDNQLKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344433 444444444444444444444433 1111 1134444444444444444444333333333
Q ss_pred HHHHH
Q 000699 1256 AYKQI 1260 (1345)
Q Consensus 1256 ~~~q~ 1260 (1345)
+.|+|
T Consensus 1095 l~k~i 1099 (1930)
T KOG0161|consen 1095 LQKQI 1099 (1930)
T ss_pred HHHHH
Confidence 33333
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=94.49 E-value=24 Score=46.62 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=11.8
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998664
No 48
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.69 E-value=43 Score=46.67 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=48.1
Q ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1077 QERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARH 1156 (1345)
Q Consensus 1077 ~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~h 1156 (1345)
+.|..|-+-=.+++..-++++.++..-+.-.+-+..++.....=-+++.......+ ..+-+.|..+++...+|-.-+
T Consensus 881 ~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 881 QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 37777877777777777777777777666666666665544433333333333222 334445555666666666666
Q ss_pred HHHHh
Q 000699 1157 RKIQE 1161 (1345)
Q Consensus 1157 r~i~~ 1161 (1345)
..|.+
T Consensus 958 ~~i~~ 962 (1311)
T TIGR00606 958 KDIEN 962 (1311)
T ss_pred HHHHH
Confidence 66654
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.65 E-value=13 Score=46.29 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHhhhhhhhHhhhchHHH----HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1201 RQYLRDENKGLQAQLRDTAEA----VQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1201 r~~l~~en~~l~~qlrdtaea----v~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
+..+.++-..|+..++..-++ ++.+-.|=.++.+.|....-.+++...++++..++..++..+.+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333 344455555555555555555555666666666666666665554
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.52 E-value=18 Score=41.81 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHhhhchH
Q 000699 1143 ADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVA---REKERQYLRDENKGLQAQLRDTA 1219 (1345)
Q Consensus 1143 ~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~e---reker~~l~~en~~l~~qlrdta 1219 (1345)
.++...|...+.+++.-+++.=.-|=...++++.- .+.-+.++-.|+..+|.. -+.|-.-|+..|.+|..+|+|+=
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~-~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKLEELRQQSEK-SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhcccccccccccccc-cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 45556666666666665554433333333322222 122333344444444432 23344456667888888887763
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1220 EAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETV---TAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1220 eav~aagellvrl~eaeea~~~a~~~~~~~~qe~~---k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
.-.+ ..+..-...+..-+.....+.++.+ .-|+++-.+|=.-++||.|-..+|
T Consensus 251 ~~~~------~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 251 QRLD------EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2211 1122222222222222222222221 124555666778889999999988
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.17 E-value=49 Score=45.78 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCc------ccCCc--cccCCcccccCCC
Q 000699 1232 LKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPK------ETIRP--AFDDSSMAKYDVE 1303 (1345)
Q Consensus 1232 l~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~------~~~~~--~~~~~~~~~~~~~ 1303 (1345)
+++|..+-..|+.....++++.+++..++++|.+.-...=.||-.||-+- .|. ..|-| +|+.+-.|....
T Consensus 499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~-~p~We~tIGKVid~eLL~r~dL~P~l~~- 576 (1201)
T PF12128_consen 499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN-KPGWEQTIGKVIDEELLYRTDLEPQLVE- 576 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC-CCcHHHHhHhhCCHHHhcCCCCCCeecC-
Confidence 44555555566667777788888888888888888888888999999443 442 22333 555544444321
Q ss_pred CCCCCCchHHHHHHHhhhccCchhhhcccCCCCc
Q 000699 1304 EEPHSAGDQQWREEFQQFYTDDSEISKLAEPSWF 1337 (1345)
Q Consensus 1304 ~~~~~~~dq~wr~ef~~~~~~~~~~~~~~~~~~~ 1337 (1345)
....| .||--...++.+.-|.|.
T Consensus 577 ---~~~~d--------slyGl~LdL~~I~~pd~~ 599 (1201)
T PF12128_consen 577 ---DSGSD--------SLYGLSLDLSAIDVPDYA 599 (1201)
T ss_pred ---CCccc--------ccceeEeehhhcCCchhh
Confidence 11011 556445567777666553
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.34 E-value=53 Score=44.07 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=4.7
Q ss_pred CHHHHHHHH
Q 000699 275 TMKDVTQLL 283 (1345)
Q Consensus 275 S~eE~l~LL 283 (1345)
+..++..+|
T Consensus 120 ~~~~~~~~l 128 (1179)
T TIGR02168 120 RLKDIQDLF 128 (1179)
T ss_pred cHHHHHHHH
Confidence 445555555
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.19 E-value=22 Score=46.33 Aligned_cols=185 Identities=23% Similarity=0.336 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---H-HhhhHHHHHH----------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELE---A-EKKCVEELHE----------AMQMAMEGNARMLEQYADLEEKHIQLLARHRKI 1159 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~---~-ek~c~eel~~----------al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i 1159 (1345)
..||.||.+.|+.-+.++..|. . |+.+..||.. -++-.+..--.=-..-.-||.|+.+.. ++|..
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~-~~R~~ 506 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER-RQRAS 506 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4588888888887777776632 2 5555555542 222222222222223344455544433 33333
Q ss_pred Hh-hHHHHHHHHHHhcccCch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhh---h
Q 000699 1160 QE-GIEDVKKAAAKAGVRGAE----SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLV---R 1231 (1345)
Q Consensus 1160 ~~-gi~~vk~aaakag~kg~~----~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellv---r 1231 (1345)
.| =..+.||+--++.-+.+- +.-...=.+| ++|. | |+.|..|-+.|+.+|+..=|.++.+=+=+- .
T Consensus 507 lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e--~~r~---r-~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 507 LEKQLQEERKARKEEEEKAARALAQAQATRQECAE--SCRQ---R-RRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHhHHHHhhhhccccchhccchhHH--HHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 344555442222111110 0000011122 2322 2 255667777777777777777776644332 1
Q ss_pred h-hh----HH---HHHHHHHHHHHHHHH--------------HHHHHHHHHHH---HhhhhhhhHHHHHHHHhh--cCCC
Q 000699 1232 L-KE----AE---EAVAAARKRAMEAEQ--------------ETVTAYKQIDQ---LKKKHEMEVSTLNEIIAE--SRLP 1284 (1345)
Q Consensus 1232 l-~e----ae---ea~~~a~~~~~~~~q--------------e~~k~~~q~~k---lk~kh~~e~~t~~~~lae--s~lp 1284 (1345)
. || +| .|+++-|+...-+|. ..-.+++|||- .-++-+.||..||+-||+ .-+|
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 33 22 244555555544443 22356677765 345678999999999987 4556
Q ss_pred c
Q 000699 1285 K 1285 (1345)
Q Consensus 1285 ~ 1285 (1345)
.
T Consensus 661 ~ 661 (697)
T PF09726_consen 661 S 661 (697)
T ss_pred c
Confidence 6
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.75 E-value=54 Score=42.93 Aligned_cols=131 Identities=23% Similarity=0.314 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHH--hcccCchhhHHHHHHHHHHHHHHHHH
Q 000699 1142 YADLEEKHIQLLARHRKIQE---------------------GIEDVKKAAAK--AGVRGAESKFINVLAAEISALKVARE 1198 (1345)
Q Consensus 1142 y~~l~ek~~~l~~~hr~i~~---------------------gi~~vk~aaak--ag~kg~~~~f~~~laae~s~lr~ere 1198 (1345)
--||+.||..++.--|+|++ -|++.|-...+ -|+|.|++. -|-|+.-+-.|-. --
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~-kneL~~a~ekld~-mg 430 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAA-KNELQEALEKLDL-MG 430 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHH-HHHHHHHHHHHHH-Hh
Confidence 35788888888888888865 45555555554 577776632 2222211110000 00
Q ss_pred HHHHHHHhhhhhhhHhhhchHH-----HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 000699 1199 KERQYLRDENKGLQAQLRDTAE-----AVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVST 1273 (1345)
Q Consensus 1199 ker~~l~~en~~l~~qlrdtae-----av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t 1273 (1345)
+++-.+-.+--..| -|..+|| |+.---|+.+|||.-+-. .+ .-..++||.+.+|-..++=++| |.-
T Consensus 431 thl~mad~Q~s~fk-~Lke~aegsrrraIeQcnemv~rir~l~~s--le--~qrKVeqe~emlKaen~rqakk----ief 501 (1265)
T KOG0976|consen 431 THLSMADYQLSNFK-VLKEHAEGSRRRAIEQCNEMVDRIRALMDS--LE--KQRKVEQEYEMLKAENERQAKK----IEF 501 (1265)
T ss_pred HHHHHHHHHHhhHH-HHHHhhhhhHhhHHHHHHHHHHHHHHHhhC--hh--hhcchHHHHHHHHHHHHHHHHH----HHH
Confidence 11111111222222 2566776 567788999999865432 23 3346788888888777776665 556
Q ss_pred HHHHHhhcCC
Q 000699 1274 LNEIIAESRL 1283 (1345)
Q Consensus 1274 ~~~~laes~l 1283 (1345)
||+-|-|.+|
T Consensus 502 mkEeiQethl 511 (1265)
T KOG0976|consen 502 MKEEIQETHL 511 (1265)
T ss_pred HHHHHHHHHH
Confidence 7777766665
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.61 E-value=48 Score=42.08 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=46.4
Q ss_pred hhhhhhHhhhchHHHHH-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000699 1207 ENKGLQAQLRDTAEAVQ-AAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEME 1270 (1345)
Q Consensus 1207 en~~l~~qlrdtaeav~-aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e 1270 (1345)
|+..|+.||..=-++=+ .-.|.-=.|.|-+-++.+||+--.....|+..|..-|..|..+.++-
T Consensus 393 E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 393 ERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555432222211 24456667778888999999999999999999999999999998875
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.56 E-value=1.1 Score=57.78 Aligned_cols=166 Identities=19% Similarity=0.313 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEG----NARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKA 1169 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~g----har~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~a 1169 (1345)
++|..+|..++..+..++.++. ++...... ....-|.|..|+.+...|=.-+.+...-|+.....
T Consensus 464 ~~l~~~l~~~k~~~~~~~~e~~-----------~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 464 EELEEELSEQKQRNETLEAELK-----------SLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhhhh-----------hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556555555555554443 22222222 23467888889999988888888888888888877
Q ss_pred HHHhcccC----chhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHH
Q 000699 1170 AAKAGVRG----AESK---FINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAA 1242 (1345)
Q Consensus 1170 aakag~kg----~~~~---f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a 1242 (1345)
-.+-..+| ..+| |.+..+++.-++| ..+-+.|+.||..|+.+|+..-+.-...+.+... ......
T Consensus 533 l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k---~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~-----~~~~~~ 604 (722)
T PF05557_consen 533 LEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIK---KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPT-----SSLESQ 604 (722)
T ss_dssp HHHHCCCT--BTTTEEEEEESS-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTTT--------------------
T ss_pred HHHhhhccccCCCCceeeeeCCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccc-----hhhhhh
Confidence 76633344 2233 7777888777665 4788889999999999995321111111111111 112344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1243 RKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1243 ~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
+.....++.+.+.+.|.+..||.-+..-+......+
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555778888888888899999888877777666654
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.19 E-value=45 Score=45.34 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=131.7
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHhhhHHHHH-HHHHHH
Q 000699 1075 FEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVE-------ELHEAMQMAMEGNARMLE-QYADLE 1146 (1345)
Q Consensus 1075 le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~e-------el~~al~~a~~ghar~~e-~y~~l~ 1146 (1345)
.|.|-.+|..-=-..| -.+.|..|......-++++-+|+.|..=.. |..++.+.-+.--+-.+. -..+++
T Consensus 313 kenel~~~~~~~~q~~--~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k 390 (1293)
T KOG0996|consen 313 KENELFRKKNKLCQYI--LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLK 390 (1293)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777778875333332 223666666666666666666665544433 555666666666666666 777888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcc----------------cCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1147 EKHIQLLARHRKIQEGIEDVKKAAAKAGV----------------RGAESKFINVLAAEISALKVAREKERQYLRDENKG 1210 (1345)
Q Consensus 1147 ek~~~l~~~hr~i~~gi~~vk~aaakag~----------------kg~~~~f~~~laae~s~lr~ereker~~l~~en~~ 1210 (1345)
++|.+|-.+-.++.|+..-+..-..|+-+ -++ .+=|.-+--||..|....++|++-|.+.-..
T Consensus 391 ~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~-~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 391 KKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA-RIEIQKCQTEIEQLEELLEKEERELDEILDS 469 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888887655443333221 121 2456778889999999999999888776544
Q ss_pred hhHhhhchHHHHHhhh--------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000699 1211 LQAQLRDTAEAVQAAG--------ELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEM 1269 (1345)
Q Consensus 1211 l~~qlrdtaeav~aag--------ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~ 1269 (1345)
|.+++++..+.= -+|-++.+|..-+.+|+..+-.+.+-.+.+.++.+.||.++..
T Consensus 470 ----l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 470 ----LKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred ----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776643 2567899999999999999999999999999999988887765
No 58
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.13 E-value=69 Score=43.02 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=94.2
Q ss_pred HHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Q 000699 1116 AEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKV 1195 (1345)
Q Consensus 1116 ~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ 1195 (1345)
.||+-..|++ +|+-++.-|++-.+-|--+-+--++++.-|+..-+--.+.+-- .|-++ +-++-=+-|||-|-+
T Consensus 437 ~~K~L~~E~e-kl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~-----iknln-k~L~~r~~elsrl~a 509 (1195)
T KOG4643|consen 437 LEKKLQFELE-KLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQ-----IKNLN-KSLNNRDLELSRLHA 509 (1195)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHH
Confidence 4566666654 5667788888888888666677777777776654444333322 22232 233444566776666
Q ss_pred HHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1196 AREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKE--------------AEEAVAAARKRAMEAEQETVTAYKQID 1261 (1345)
Q Consensus 1196 ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~e--------------aeea~~~a~~~~~~~~qe~~k~~~q~~ 1261 (1345)
...++-+ +.+-..+|+.-+-+=.+---++|+=|.+ .++--.+-+..-...++...+++|=||
T Consensus 510 ~~~elke----Q~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~id 585 (1195)
T KOG4643|consen 510 LKNELKE----QYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYID 585 (1195)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5555444 3444556666665554444455554432 222333334444555666677888888
Q ss_pred HHhh----hhhhhHHHHHHHHhhcCCC
Q 000699 1262 QLKK----KHEMEVSTLNEIIAESRLP 1284 (1345)
Q Consensus 1262 klk~----kh~~e~~t~~~~laes~lp 1284 (1345)
+|+. |-+-|+.-||||+++-++|
T Consensus 586 aL~alrrhke~LE~e~mnQql~~d~~~ 612 (1195)
T KOG4643|consen 586 ALNALRRHKEKLEEEIMNQQLFEDPIP 612 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCc
Confidence 8862 4456888899999998865
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.84 E-value=0.35 Score=59.67 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=56.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCcccc-ccCCCCCCChHHHHHHH
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEE-NLSSDQQGLTPRVFERL 210 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~-~~s~~~~GIIPRal~dL 210 (1345)
..|....-|.|.-+|-.- ...||+.+-.|.-.-+ -.|.|||||||||----...--+ -.-.++.- ...+|
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKT----LAaQL 73 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKT----LAAQL 73 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchh----HHHHH
Confidence 457777888898888543 3346666666654443 46999999999995421100000 00011121 34556
Q ss_pred HHHHHHHHHhhhcccceeEEEEEEEEEecceee
Q 000699 211 FSRINEEQIKHADKQLNYQCRCSFLEIYNEQIT 243 (1345)
Q Consensus 211 Fs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~ 243 (1345)
|+.+.+. -+...+..+|||+.-|.-.-|
T Consensus 74 y~Efk~f-----FP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 74 YSEFKEF-----FPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHh-----CcCcceEEEeeeccccCcccc
Confidence 6655432 233455667899998875543
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.64 E-value=1e+02 Score=44.13 Aligned_cols=299 Identities=22% Similarity=0.291 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhcc---CCCCCchhhhhHHHHhhHHHHHHHHHhhh-cCccch
Q 000699 914 KQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLM---DGVLPTEEFMDEEFASLMHEHKLLKEKYE-NHPEVL 989 (1345)
Q Consensus 914 ~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~---dg~l~~~~~~~ee~~~l~~e~k~l~~~~~-~~pev~ 989 (1345)
-+...|..|++=+-.-....+|.+++.+..++.+...+-+. +-. -.+-+|+.++..-.+-|+++++ -+-++.
T Consensus 1185 ~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN----~~LRee~~~~~~k~qEl~~~i~kl~~el~ 1260 (1822)
T KOG4674|consen 1185 SLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESN----KVLREENEANLEKIQELRDKIEKLNFELA 1260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 33445556666666666667788888888887664433221 111 1122333333222222222211 123444
Q ss_pred hhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhc----CcchhhccCCCccccccCCCCCCCCCCCCCC
Q 000699 990 GTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDS----SSSSARKQKSFPQLTYSCEPSLVPSLSTVPE 1065 (1345)
Q Consensus 990 ~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~----s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1065 (1345)
.+.++++.+..+++.. +.|-+.|-.|...-|-+-|..+.. ..+..+|+..
T Consensus 1261 plq~~l~el~~e~~~~-----~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~--------------------- 1314 (1822)
T KOG4674|consen 1261 PLQNELKELKAELQEK-----VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS--------------------- 1314 (1822)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH---------------------
Confidence 4555566666555532 336666666766666666544322 2222222110
Q ss_pred CCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000699 1066 PTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADL 1145 (1345)
Q Consensus 1066 ~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l 1145 (1345)
.-..|+.|.. +.| .+-.||-.+|...| ++.+.-|+.=+.|-+.|.+-++..+.---|....|-++
T Consensus 1315 -----ei~~Lk~el~---~ke----~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1315 -----EISRLKEELE---EKE----NLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred -----HHHHHHHHHH---HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112333322 111 13455556666555 67777777777788888888888887777777777666
Q ss_pred HHHHHHH---HHHHHHHH-hhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH
Q 000699 1146 EEKHIQL---LARHRKIQ-EGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA 1221 (1345)
Q Consensus 1146 ~ek~~~l---~~~hr~i~-~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea 1221 (1345)
-++-..| ..-|--++ .-+...=+-..++- |++||-.|+ +.|.+ +..++.++++|++|
T Consensus 1380 ~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~-----------~~~e~~sl~-------eeL~e-~~q~~~~~~s~~e~ 1440 (1822)
T KOG4674|consen 1380 NAQELELSDKKKAHELMQEDTSRKLEKLKEKLE-----------LSEELESLK-------EELEE-LQQLQATLQSETEA 1440 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHH-------HHHHH-HHhHHHHhhhhHHH
Confidence 5552222 22333333 22222222222222 666665554 45655 77889999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHH------HHHHHHHH---HHHHHHhhhhhhhHHHHHHHHh
Q 000699 1222 VQAAGELLVRLKEAEEAVAAARKRAMEA------EQETVTAY---KQIDQLKKKHEMEVSTLNEIIA 1279 (1345)
Q Consensus 1222 v~aagellvrl~eaeea~~~a~~~~~~~------~qe~~k~~---~q~~klk~kh~~e~~t~~~~la 1279 (1345)
|+ ..+|+.++-++-.+.++...-.. ..++..+. ..|+++|+.++.|..-+++.+.
T Consensus 1441 i~---~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~ 1504 (1822)
T KOG4674|consen 1441 IT---KELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEGTKKELESEKEELKQRLT 1504 (1822)
T ss_pred HH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH
Confidence 87 57899988888733333322111 11122222 3567777888777777777663
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=90.44 E-value=0.17 Score=56.09 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=32.9
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..++||..+.... ..- +.-+...+-.++|..++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4688999886542 211 11223334457788899999999999998865
No 62
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.18 E-value=71 Score=41.54 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH
Q 000699 1179 ESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA 1221 (1345)
Q Consensus 1179 ~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea 1221 (1345)
|-+|.. .+.|.-.+|.++|.|++..| ..|+++.|++-+.++
T Consensus 452 g~~ll~-m~~e~~~~r~~ke~~k~r~r-d~kk~s~q~~~~~~~ 492 (660)
T KOG4302|consen 452 GVPLLE-MLEEYEEHRQEKEQEKARQR-DQKKTSGQLKPEQEG 492 (660)
T ss_pred CccHHH-HHHHHHHHHHHHHHHHHhcc-cccccccccCccccc
Confidence 456777 88889999999999999554 578899999888775
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.15 E-value=1e+02 Score=43.23 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--c-----------ccCch--hhHHHHHHHHHHHH---HH
Q 000699 1134 GNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKA--G-----------VRGAE--SKFINVLAAEISAL---KV 1195 (1345)
Q Consensus 1134 ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaaka--g-----------~kg~~--~~f~~~laae~s~l---r~ 1195 (1345)
+..-+-+...++++.|......|-.......-.+++-..| - .++-+ ..|++-|...+..+ ..
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~ 712 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHH
Confidence 4455566778899999999988888877777777777777 3 23322 47999988888875 44
Q ss_pred HHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1196 AREKERQYLRDENKGLQAQLRDTAEAVQAAGELL-VRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKK 1265 (1345)
Q Consensus 1196 ereker~~l~~en~~l~~qlrdtaeav~aagell-vrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1265 (1345)
+-+++-.-+++....|+.. -..+...-+++ -++.+.++....++.....++.+.+++...+++++.
T Consensus 713 ~~~~~~~~~~~~~e~l~~l----~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~ 779 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGL----APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP 779 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444343333333322 11122233333 344445555555555555555555555555544443
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.78 E-value=0.098 Score=57.74 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+... .++..|..+- .+.+.--..+| .+|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~~~-~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAAAK-AIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHHHH-HHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHHHH-HHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 469999876543 3455664432 23333111233 478999999999998755
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=79 Score=41.70 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHH
Q 000699 889 LVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEF 968 (1345)
Q Consensus 889 ~~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~ 968 (1345)
+..|..|++++.++.--.+.|..-+.-....++|-+.++.||.... + +|+.
T Consensus 622 kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~---------~---------lD~~----------- 672 (970)
T KOG0946|consen 622 KLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIR---------E---------LDYQ----------- 672 (970)
T ss_pred HHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHH---------H---------HhhH-----------
Confidence 5678899999999988666666666666778999999999998643 0 2221
Q ss_pred HhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 000699 969 ASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQY 1030 (1345)
Q Consensus 969 ~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~ 1030 (1345)
..-||++ +.++.+|++++++++..+. .+.--|.++...||.||.-
T Consensus 673 ------~e~lkQ~------~~~l~~e~eeL~~~vq~~~-----s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 673 ------IENLKQM------EKELQVENEELEEEVQDFI-----SEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred ------HHHHHHH------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcc
Confidence 2222221 2234566667777666432 2777888899999999883
No 66
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.31 E-value=43 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=16.2
Q ss_pred CCCccCCCC--ccccccccccCCCcc
Q 000699 381 QRHIPYRDS--RLTFLLQESLGGNAK 404 (1345)
Q Consensus 381 ~~hIPYRDS--KLTrLLQDSLGGNSK 404 (1345)
++.++|+-. .|+.+|.++|-.-+.
T Consensus 194 ~P~Ls~~~~~~~l~~~l~~~l~~l~~ 219 (1353)
T TIGR02680 194 QPQLSKKPDEGVLSDALTEALPPLDD 219 (1353)
T ss_pred CCCCCCCCChHHHHHHHHHhCCCCCH
Confidence 456666655 588888888865443
No 67
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.31 E-value=0.11 Score=66.59 Aligned_cols=108 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000699 1096 LRNELEASRSLAEKQKQELEAEKKCVEEL-------HEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKK 1168 (1345)
Q Consensus 1096 LR~eLe~~r~~aek~~~el~~ek~c~eel-------~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~ 1168 (1345)
+|..|+.++...-.++.+|..|.+..+.| .+-+..+.....|+++....|+|....|-.- ... ..
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~--~~~------~~ 432 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECS--QAQ------QE 432 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccc------cc
Confidence 56677777777777777777776665443 3333444444555665555566554444110 000 01
Q ss_pred HHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 000699 1169 AAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQL 1215 (1345)
Q Consensus 1169 aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~ql 1215 (1345)
...++|-. ++.=-.+|++|+..... ||+ -..|..||+.|+.+.
T Consensus 433 ~l~~~~~~--~~~~~~~l~~El~~~~l-~er-l~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 433 QLSQSGEE--SSSSGDNLSAELNPAEL-RER-LLRLEHENKRLKEKQ 475 (713)
T ss_dssp -----------------------------------------------
T ss_pred cccccccc--ccccccchhhhccchHH-HHH-HHHHHHHHHHHHHHh
Confidence 11122211 11223467888864322 222 245889999997654
No 68
>PRK09039 hypothetical protein; Validated
Probab=89.13 E-value=39 Score=40.45 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH---HHHH
Q 000699 1124 LHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVA---REKE 1200 (1345)
Q Consensus 1124 l~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~e---reke 1200 (1345)
|-+.|.+=....+++=+.-++|+..|..+.++-.+....++ .+++.......=+..|.++|..+|++ --.+
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~------~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~ 138 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA------ELAGAGAAAEGRAGELAQELDSEKQVSARALAQ 138 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666667777777766555444443333 11111111112233456677766664 3455
Q ss_pred HHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhH-HHHHHHH
Q 000699 1201 RQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQ-IDQLKKKHEMEV-STLNEII 1278 (1345)
Q Consensus 1201 r~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q-~~klk~kh~~e~-~t~~~~l 1278 (1345)
-..|+.|...|+.||.....|+ .+||+.-.-++.++...+++.+++..+ +..|.+ |+.++ ..|.+.|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L----------~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~-~~~~~~~~l~~~~ 207 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAAL----------DASEKRDRESQAKIADLGRRLNVALAQRVQELNR-YRSEFFGRLREIL 207 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHh
Confidence 6778889999999954444333 333444444555555555555555433 333332 33333 3444555
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.09 E-value=1.1e+02 Score=42.06 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000699 1073 EKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQ 1129 (1345)
Q Consensus 1073 ~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~ 1129 (1345)
.+|++|++.-..-.+..=...+..|.+++..-.-.++++. .+.+|.+||+|-+-
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~---~~~~~~~~l~e~~~ 468 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE---LLEKEERELDEILD 468 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455554443333333223344444444444444444433 34556666666543
No 70
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.45 E-value=0.23 Score=57.88 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=27.6
Q ss_pred chhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 154 GVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 154 v~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
..|+|..+++--++.|+.-|+||||||+||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 3468888999999999999999999999984
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.24 E-value=21 Score=43.60 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=76.8
Q ss_pred hhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHH---HHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCcchh
Q 000699 963 FMDEEFASLMHEHKLLKEKYENHPEVLGTKIELK---RVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSA 1039 (1345)
Q Consensus 963 ~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k---~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~ 1039 (1345)
-+.-|+..|.|=+.-|-+.|..- |+. .|.||-++.+.-|-.-|||+=| |+.+|...+|. ++-..+-+
T Consensus 247 rlkqEnlqLvhR~h~LEEq~req--------ElraeE~l~Ee~rrhrEil~k~eReasl-e~Enlqmr~qq-leeentel 316 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQ--------ELRAEESLSEEERRHREILIKKEREASL-EKENLQMRDQQ-LEEENTEL 316 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHH
Confidence 45678888888777776666432 432 5677777777777677888754 45555555554 32333322
Q ss_pred hccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1040 RKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKK 1119 (1345)
Q Consensus 1040 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~ 1119 (1345)
|....-++ ..-++|+.|++|-- -..=.|++-|-++-+-++..+.++.+ ...||+
T Consensus 317 Rs~~arlk----------------------sl~dklaee~qr~s---d~LE~lrlql~~eq~l~~rm~d~Lrr-fq~eke 370 (502)
T KOG0982|consen 317 RSLIARLK----------------------SLADKLAEEDQRSS---DLLEALRLQLICEQKLRVRMNDILRR-FQEEKE 370 (502)
T ss_pred HHHHHHHH----------------------HHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhH
Confidence 22111111 13456777777643 23334555555555666666666665 677777
Q ss_pred hHHHHHHHHHH
Q 000699 1120 CVEELHEAMQM 1130 (1345)
Q Consensus 1120 c~eel~~al~~ 1130 (1345)
.|+||-+-|.+
T Consensus 371 atqELieelrk 381 (502)
T KOG0982|consen 371 ATQELIEELRK 381 (502)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 72
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.80 E-value=54 Score=37.10 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=47.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000699 1226 GELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1226 gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1280 (1345)
..|=-||++||--+..|+.+...++.++..+...|++.|.+|+.=-..|-+-|+|
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999998766666666654
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.61 E-value=1.3e+02 Score=41.38 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=16.6
Q ss_pred cCCcccEeecCCCCCCcceeec
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.|+-|=|+..-..+|||-|.|-
T Consensus 85 rGaFGEV~lVr~k~t~~VYAMK 106 (1317)
T KOG0612|consen 85 RGAFGEVALVRHKSTEKVYAMK 106 (1317)
T ss_pred ccccceeEEEEeeccccchhHH
Confidence 5777777777778888888883
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.22 E-value=21 Score=39.66 Aligned_cols=79 Identities=25% Similarity=0.279 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1179 ESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYK 1258 (1345)
Q Consensus 1179 ~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~ 1258 (1345)
-..|+++|.-||--||. .-.-|-.+|++|..|.|-+ |.-...-.......++||.|+.-
T Consensus 58 al~~aK~l~eEledLk~----~~~~lEE~~~~L~aq~rql-----------------EkE~q~L~~~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 58 ALQKAKALEEELEDLKT----LAKSLEEENRSLLAQARQL-----------------EKEQQSLVAEIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 36799999999988887 4455677788777776544 33333334456788999999999
Q ss_pred HHHHHhhhhh---hhHHHHHHHH
Q 000699 1259 QIDQLKKKHE---MEVSTLNEII 1278 (1345)
Q Consensus 1259 q~~klk~kh~---~e~~t~~~~l 1278 (1345)
++|+||++.+ ++..+|+..|
T Consensus 117 e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 117 ERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHH
Confidence 9999999876 3455555444
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.63 E-value=25 Score=44.53 Aligned_cols=132 Identities=26% Similarity=0.318 Sum_probs=91.4
Q ss_pred HHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hcccC---chhhHHHHHHHHH
Q 000699 1116 AEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK--AGVRG---AESKFINVLAAEI 1190 (1345)
Q Consensus 1116 ~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaak--ag~kg---~~~~f~~~laae~ 1190 (1345)
.||+=-.+|+|=|-. -=||--.|-+.||+..--|...+-.+-+ .|+|. ++..=+..+-+|.
T Consensus 39 rEK~El~~LNDRLA~--------------YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 39 REKKELQELNDRLAV--------------YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 355555678886633 2244555667788888888877765544 34443 2333333344455
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhh----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1191 SALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAG----ELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQID 1261 (1345)
Q Consensus 1191 s~lr~ereker~~l~~en~~l~~qlrdtaeav~aag----ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~ 1261 (1345)
-.=|++=|.|-.-|++|++.|+..+.++...+..|= +.+.||-+.|-....++.|...++.|...||+++.
T Consensus 105 ~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555667778888999999999999999987776664 46889999999999999999888877766666543
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.56 E-value=69 Score=37.08 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHhhhchHHHHHhhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDENK-GLQAQLRDTAEAVQAAGELLVR----LKEAEEAVAAARKRAMEAEQETVTA 1256 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en~-~l~~qlrdtaeav~aagellvr----l~eaeea~~~a~~~~~~~~qe~~k~ 1256 (1345)
|-.-|++-|..+|++-|......+.+.. -.+.|+.+--..+...++-+.+ +++....+...+.....++..+..|
T Consensus 163 ~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 163 RSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence 3444666677777776665554444322 2233343333333333333332 3344445555666666677777777
Q ss_pred HHHHHHHhhhhhhhHHHHHHHH
Q 000699 1257 YKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1257 ~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
..+|.-|...|.++...+...+
T Consensus 243 e~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 243 ERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777666555544
No 77
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=86.34 E-value=53 Score=36.94 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHhcccCchhhHHHHH----HHHHHHHH
Q 000699 1134 GNARMLEQYADLEEKHIQLLARHRK---------------IQEGIEDVKKAAAKAGVRGAESKFINVL----AAEISALK 1194 (1345)
Q Consensus 1134 ghar~~e~y~~l~ek~~~l~~~hr~---------------i~~gi~~vk~aaakag~kg~~~~f~~~l----aae~s~lr 1194 (1345)
..+.|+-.-|.+|+.|-.-|.+--+ +..+...|.-.....| +....|++.| ..+|+.++
T Consensus 23 ~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a--~~H~~~a~~l~~~v~~~l~~~~ 100 (251)
T cd07653 23 RYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIA--GQHELIAENLNSNVCKELKTLI 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777776655332 2233444444433333 1223555554 47889999
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhh-hHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 000699 1195 VAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLK-EAEEAVAAARK----------RAMEAEQETVTAYKQIDQL 1263 (1345)
Q Consensus 1195 ~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~-eaeea~~~a~~----------~~~~~~qe~~k~~~q~~kl 1263 (1345)
.+.+++|+-+..+...|+..+.+....|.-|-.--..+- +++.|-..-++ ....+++...+...++++.
T Consensus 101 ~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a 180 (251)
T cd07653 101 SELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEA 180 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887777664 55544322211 1223444445555556667
Q ss_pred hhhhhhhHHHHHHHH
Q 000699 1264 KKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1264 k~kh~~e~~t~~~~l 1278 (1345)
+..|..-|...|.+.
T Consensus 181 ~~~Y~~~l~~~N~~~ 195 (251)
T cd07653 181 KNEYAAQLQKFNKEQ 195 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766554
No 78
>PRK11637 AmiB activator; Provisional
Probab=86.08 E-value=72 Score=39.02 Aligned_cols=69 Identities=9% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKA 1169 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~a 1169 (1345)
++++.+|+..+.-.+.++.++..-++=-.++...|. .+-.+..+++++++++-..-..+..-|+...+.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~-------~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLK-------KQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666533332223333322 244445555555555554444444444444433
No 79
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.92 E-value=93 Score=41.38 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1133 EGNARMLEQYADLEEKHIQLLARHRKI 1159 (1345)
Q Consensus 1133 ~ghar~~e~y~~l~ek~~~l~~~hr~i 1159 (1345)
.-|--+.|-|++|.++|.+||.+-.-|
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777766665544
No 80
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.89 E-value=22 Score=36.85 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHH
Q 000699 1122 EELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKER 1201 (1345)
Q Consensus 1122 eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker 1201 (1345)
+.....++.+..-.-...+.+.+.|++|-.=|-+|-..+.-|..||..+.... .+|..|+.+++.=+
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~-------------~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ-------------QEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 34444555555555666778889999999999999999988888888766543 33333333222111
Q ss_pred HHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1202 QYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQL 1263 (1345)
Q Consensus 1202 ~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~kl 1263 (1345)
.-| ++ +=+..-.|=..-+.-+..++.|..++...|.=|..|||.|
T Consensus 87 ~~l---------------~~--~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 87 AEL---------------EE--SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHH---------------HH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 00 0111223334445566778889999999999999999865
No 81
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.87 E-value=1.5e+02 Score=40.23 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHhhhhhhhHhhh-chHHHHHhhhhhhhhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1202 QYLRDENKGLQAQLR-DTAEAVQAAGELLVRLKEAEEAVAAARK------RAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1202 ~~l~~en~~l~~qlr-dtaeav~aagellvrl~eaeea~~~a~~------~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
+.+++|.+-.+.++. -|+++|.--++|=++-++-|+.-...+. +....+|...+|..-+-+||++++
T Consensus 423 e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~ 496 (1174)
T KOG0933|consen 423 EHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELD 496 (1174)
T ss_pred HHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666664 4677777777777777777776655543 556667777777777777766543
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.32 E-value=22 Score=41.98 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000699 1090 ISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKA 1169 (1345)
Q Consensus 1090 IslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~a 1169 (1345)
+.+.+.|+..|+.+......=.. -|.+.++ -|.+.+.+|.++|-.++.-|...|.+
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~----------~L~~~~~--------------~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYA----------KLDKQLE--------------QLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888877655432111 1222222 23444445555555555555555555
Q ss_pred HHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhH-HHHHHHHHHHHHH
Q 000699 1170 AAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEA-EEAVAAARKRAME 1248 (1345)
Q Consensus 1170 aakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~ea-eea~~~a~~~~~~ 1248 (1345)
++-.+ .|..-=.++|-+||+.+..+= +.+|++-..|+.||..--+.|.+.-+..-.|++. .+|-.+-++.-.-
T Consensus 200 ~~e~~--~~D~~eL~~lr~eL~~~~~~i----~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 200 VEEIE--SCDQEELEALRQELAEQKEEI----EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred Hhhhh--hcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55422 233345666677777766643 3334444555555555555544444333333222 1111111222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 000699 1249 AEQETVTAYKQIDQLKKKHEMEVSTLN 1275 (1345)
Q Consensus 1249 ~~qe~~k~~~q~~klk~kh~~e~~t~~ 1275 (1345)
-..|..+|+.+++.|.+.|.-.|..+.
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 456777888888888888877765544
No 83
>PRK06620 hypothetical protein; Validated
Probab=85.15 E-value=0.31 Score=53.83 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=33.6
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCc---ccEeecCCCCCCcceeecC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFN---SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyN---aTIfAYGQTGSGKTYTM~G 185 (1345)
...|+||..+...++ ...|..+.. +.+. -|+| -.++-||++|+||||.+..
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 346889987765544 556666542 2221 1444 3589999999999999853
No 84
>PRK09087 hypothetical protein; Validated
Probab=84.76 E-value=0.46 Score=52.91 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=32.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+....+ ..+|..+ .....-.+..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 46889888764444 4466633 332222355589999999999999853
No 85
>PRK12377 putative replication protein; Provisional
Probab=84.67 E-value=0.51 Score=53.59 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=36.1
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..+||........|..++..+ ..+++.+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 346776555555666677653 35677766554 4688899999999999876
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=84.48 E-value=0.57 Score=52.24 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.4
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhc---CC-cccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLS---GF-NSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe---Gy-NaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+... +...+ ..+....+ ++ ...++-||++|+||||-+.+
T Consensus 14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 468999877432 22232 33333332 22 24688999999999998754
No 87
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.44 E-value=23 Score=37.12 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1181 KFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQI 1260 (1345)
Q Consensus 1181 ~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~ 1260 (1345)
.|-..|+..+..++.+- ..|...+..|+.++-+. =+..+-+..+.+.++.....++........|..|++..+
T Consensus 52 ~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~~---ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEEL---ERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666633 34555666666655433 333344556667777777777777777777777777666
Q ss_pred HHHh-------hhhhhhHHHHHHHHhh
Q 000699 1261 DQLK-------KKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1261 ~klk-------~kh~~e~~t~~~~lae 1280 (1345)
...+ ||-+.||..||..|.+
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6655 4456678888887753
No 88
>PRK03918 chromosome segregation protein; Provisional
Probab=83.83 E-value=1.6e+02 Score=38.96 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.5
Q ss_pred eecCCCCCCcceee
Q 000699 170 FAYGQTGSGKTYTM 183 (1345)
Q Consensus 170 fAYGQTGSGKTYTM 183 (1345)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999998654
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.65 E-value=2e+02 Score=39.84 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=23.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHH
Q 000699 1229 LVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQ--LKKKHEMEVSTL 1274 (1345)
Q Consensus 1229 lvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~k--lk~kh~~e~~t~ 1274 (1345)
.-=|.+..+|.......+.+...++.+-..+.+| ++.+|+.++..+
T Consensus 632 i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~ 679 (1317)
T KOG0612|consen 632 ISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKML 679 (1317)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555444444455555555555555 666665555433
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.43 E-value=1.1e+02 Score=38.23 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=9.2
Q ss_pred hhhhhhHHH-HHHHHhhc
Q 000699 1265 KKHEMEVST-LNEIIAES 1281 (1345)
Q Consensus 1265 ~kh~~e~~t-~~~~laes 1281 (1345)
+++-..++. |++||.-.
T Consensus 423 ~~~l~~~n~~~~~~L~~l 440 (562)
T PHA02562 423 KKYIPYFNKQINHYLQIM 440 (562)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455544 77777433
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.41 E-value=0.8 Score=53.96 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=31.5
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhc-CCcccEeecCCCCCCcceee
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLS-GFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe-GyNaTIfAYGQTGSGKTYTM 183 (1345)
..|..+.+.+.-..-++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 21 ~~l~~~~~P~~l~~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 21 EVLEPDYVPENLPHREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred hhCCCCCcCCCCCCHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344444454444444555555443 3334443 45567899999999999987
No 92
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.40 E-value=0.57 Score=57.09 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=34.1
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
...|+||..+-. .++...|..+. .++++ -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 357999987753 44555666543 23332 122665 99999999999999865
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.40 E-value=0.64 Score=51.78 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=31.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+.. .+...+..+.. ++. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 46788876654 45556654332 211 22234789999999999999865
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.32 E-value=0.48 Score=59.93 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=34.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+-... +..+|..+ ..+++..-.+||. ||-||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 5799998664443 34455333 3444443346776 89999999999999865
No 95
>PRK06526 transposase; Provisional
Probab=83.15 E-value=0.54 Score=53.37 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=26.6
Q ss_pred cCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 140 ADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 140 Fd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
+.+..++..+........++ .|.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 44445555555443434443 3444 79999999999999976
No 96
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.97 E-value=0.53 Score=58.04 Aligned_cols=30 Identities=30% Similarity=0.404 Sum_probs=26.2
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..+..++..-+|.|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 356677888899999999999999999976
No 97
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.69 E-value=0.71 Score=53.76 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=30.9
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHHHhc-CCcccEeecCCCCCCcceee
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVENCLS-GFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVdsvLe-GyNaTIfAYGQTGSGKTYTM 183 (1345)
|.-|++.+.-...++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444444445555555543 3444444 45678999999999999987
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=82.27 E-value=1.9e+02 Score=38.65 Aligned_cols=42 Identities=7% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000699 1129 QMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAA 1170 (1345)
Q Consensus 1129 ~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aa 1170 (1345)
...+.....+.+.|..++++|..+-..+..+..-+..++.--
T Consensus 656 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 697 (895)
T PRK01156 656 KKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANR 697 (895)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444467777777777777777777777766666655443
No 99
>PRK08116 hypothetical protein; Validated
Probab=82.16 E-value=0.74 Score=52.59 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=35.1
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhc--CCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLS--GFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe--GyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..++||... .+..+...|.. +...++++.. +.+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357888654 34555556654 3456666544 3455699999999999998854
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.05 E-value=0.7 Score=56.57 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=31.6
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.|+||...... ++...|..+ ..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866544 445566433 333322111234 488999999999999855
No 101
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=82.01 E-value=0.65 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=17.4
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
....++..|+||||||++|.+
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 356677788999999999986
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.93 E-value=1.9e+02 Score=38.30 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhh----hhH-------HHHHHHHH
Q 000699 1182 FINVLAAEISALKV-------AREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRL----KEA-------EEAVAAAR 1243 (1345)
Q Consensus 1182 f~~~laae~s~lr~-------ereker~~l~~en~~l~~qlrdtaeav~aagellvrl----~ea-------eea~~~a~ 1243 (1345)
++..|.+||-+||. --+.+...|+.+...|..||..+.-+++-.++.+-.| +-+ ...+.+||
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQ 446 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQ 446 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56778888888865 2345778899999999999999988777666665544 333 33344555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000699 1244 KRAMEAEQETVTAYKQI 1260 (1345)
Q Consensus 1244 ~~~~~~~qe~~k~~~q~ 1260 (1345)
.-...+-.+...||.++
T Consensus 447 DELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 447 DELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555666666655
No 103
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=81.21 E-value=0.76 Score=54.94 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=31.3
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
+..|+||...- +..+...|..+. .+...--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~-~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAAL-AVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHH-HHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35789998443 344555554432 33333111233 478899999999998854
No 104
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=80.78 E-value=40 Score=36.44 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhh
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVR 1231 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvr 1231 (1345)
|=.|+.+|.++|++..++- +|.-.++.+-|.+-+-=|.|-..++.+=||.+.|
T Consensus 39 Le~R~~~I~~~L~~Ae~~k-----------------~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a---------- 91 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLT-----------------IEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES---------- 91 (155)
T ss_pred HHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4468888999988766543 3444556666666666666777777777777665
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000699 1232 LKEAEEAVAAARKRA-MEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIA 1279 (1345)
Q Consensus 1232 l~eaeea~~~a~~~~-~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1279 (1345)
||+......+.+. ....|+.++..+-+|++|+.++.|++.|-.-++
T Consensus 92 --~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 92 --EFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2222222222222 346788999999999999999999999988887
No 105
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.72 E-value=0.92 Score=51.43 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=34.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
...+||........|..++..+. ..++.+..|+ ..++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~-~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKAR-QYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHHHH-HHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 35677765444455666666543 3455544443 3688999999999999866
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.33 E-value=1.9e+02 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Q 000699 1145 LEEKHIQLLARHRKIQEGIEDVKKAAAKAG 1174 (1345)
Q Consensus 1145 l~ek~~~l~~~hr~i~~gi~~vk~aaakag 1174 (1345)
.+-...+|+.+-..+.+-|+++.+.-+.|-
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455677888888888888888888776653
No 107
>PF13514 AAA_27: AAA domain
Probab=79.85 E-value=2.6e+02 Score=38.63 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=25.3
Q ss_pred hHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1072 EEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELE 1115 (1345)
Q Consensus 1072 ~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~ 1115 (1345)
=+.|...+..|......+ ..++.++...+..+..+..+|.
T Consensus 288 I~~L~~~~~~~~~~~~dl----~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQDL----PRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
Confidence 356888888888776666 4455555555555555555554
No 108
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.74 E-value=0.56 Score=60.39 Aligned_cols=240 Identities=24% Similarity=0.322 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCc
Q 000699 991 TKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKET 1070 (1345)
Q Consensus 991 ~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1070 (1345)
..-++.+++.|+.+++.... --|+|-+|+..|+.+|+.+= . .+..+.-++ -
T Consensus 262 LE~en~~l~~Elk~Lr~~~~--n~elLeEe~~sLq~kl~~~E-~----~~~el~~lq----------------------~ 312 (722)
T PF05557_consen 262 LEKENRRLREELKHLRQSQE--NVELLEEEKRSLQRKLERLE-E----LEEELAELQ----------------------L 312 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHH----------------------H
Confidence 34467888888888777665 57888899999999998642 2 222222222 0
Q ss_pred hhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000699 1071 AEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHI 1150 (1345)
Q Consensus 1071 ~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~ 1150 (1345)
.-..|+.||..|+-+-.. +++ +-.+-+.|-.+|.-.=.-|+-.++.+-.++-...
T Consensus 313 e~~~Le~el~sW~sl~~~-~~~------------------------~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 313 ENEKLEDELNSWESLLQD-IGL------------------------EFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhc-CCC------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 134488888888643322 110 3333444444444444445555555555554444
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc--hHHHHHhhh--
Q 000699 1151 QLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD--TAEAVQAAG-- 1226 (1345)
Q Consensus 1151 ~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd--taeav~aag-- 1226 (1345)
+|-..-......+..++.-+.++-.+.. ....++..=||=+..+.+|..+||.||.. +=+++..++
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~~~----------~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~ 437 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEASLE----------ALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQ 437 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchh
Confidence 4444444444444444444333322221 11222223344555666666666666653 434443333
Q ss_pred ---------hhhh-----------hhhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhh---hhh
Q 000699 1227 ---------ELLV-----------RLKEAEEAVAAARKRAMEAEQETVTA--------------YKQIDQLKKK---HEM 1269 (1345)
Q Consensus 1227 ---------ellv-----------rl~eaeea~~~a~~~~~~~~qe~~k~--------------~~q~~klk~k---h~~ 1269 (1345)
+|+- +|.+.++.+...+.+....+.+...+ ..++++|+++ .+.
T Consensus 438 ~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~ 517 (722)
T PF05557_consen 438 DTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELER 517 (722)
T ss_dssp --------------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 2222 34445554444433333333332222 2334444443 345
Q ss_pred hHHHHHHHH--hhcCCCcccCCccccC
Q 000699 1270 EVSTLNEII--AESRLPKETIRPAFDD 1294 (1345)
Q Consensus 1270 e~~t~~~~l--aes~lp~~~~~~~~~~ 1294 (1345)
|+..|.+-+ .|.+|-...|++.|..
T Consensus 518 e~~~L~~~~~~Le~~l~~~~L~g~~~~ 544 (722)
T PF05557_consen 518 ENERLRQELEELESELEKLTLQGEFNP 544 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCT--BT
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 666666655 4677766667766653
No 109
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.59 E-value=51 Score=36.42 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=76.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1082 WTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQE 1161 (1345)
Q Consensus 1082 wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~ 1161 (1345)
|.|-=--...+-+++++=|.++..+.+-.- +--+..||+. ..|+.++-+...+|++...+|-.++..+..
T Consensus 79 C~ERGlLL~rvrde~~~~l~~y~~l~~s~~---------~f~~rk~l~~-e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 79 CPERGLLLLRVRDEYRMTLDAYQTLYESSI---------AFGMRKALQA-EQGKQELEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445577888888888887766432 1234445544 468999999999999999999988888877
Q ss_pred hHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc
Q 000699 1162 GIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1162 gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd 1217 (1345)
-++.++|..+ ..++.+ .....-|-.|||.+|+.|+.||..
T Consensus 149 ~~e~~ek~~~------------e~~~~~----~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 149 KCEQLEKREE------------ELRQEE----EKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHH------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777765432 223322 344566888999999999999863
No 110
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.50 E-value=0.91 Score=55.23 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=31.3
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..... ..+...|..+. .+.+.--..|| .+|-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~~~-~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAAAL-AVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccC-CCcHHHHHHHH-HHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 56889884432 34455555433 23332112344 488899999999999855
No 111
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.40 E-value=1.1 Score=43.29 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.9
Q ss_pred CcccEeecCCCCCCcceee
Q 000699 165 FNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM 183 (1345)
....++.+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456889999999999866
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.37 E-value=91 Score=33.10 Aligned_cols=136 Identities=20% Similarity=0.255 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Q 000699 1095 ELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAG 1174 (1345)
Q Consensus 1095 eLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag 1174 (1345)
-||+|.+..-.+|+.++..++.=..+.. +.=+.+..|+-|...|=..=..+.+-+.++|.++.-+.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~--------------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENE--------------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4788888888888777766553332322 33456778888888888888888999999988887665
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000699 1175 VRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETV 1254 (1345)
Q Consensus 1175 ~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~ 1254 (1345)
..+.- +| .|-..+.-|..+|-..=. ...+..=.||+|...+--.+.+...++++..
T Consensus 70 ~~~~~--------~E-------------~l~rriq~LEeele~ae~---~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 70 KRKSN--------AE-------------QLNRRIQLLEEELEEAEK---KLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHh--------HH-------------HHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 55421 11 222223333333322222 2345556899999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 000699 1255 TAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1255 k~~~q~~klk~kh~ 1268 (1345)
..-+.++.|..||+
T Consensus 126 ~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 126 QWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999986
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.37 E-value=2e+02 Score=36.96 Aligned_cols=241 Identities=27% Similarity=0.290 Sum_probs=137.3
Q ss_pred chhhhhHHHHhhHHHHHHHHHh---hhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCc
Q 000699 960 TEEFMDEEFASLMHEHKLLKEK---YENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSS 1036 (1345)
Q Consensus 960 ~~~~~~ee~~~l~~e~k~l~~~---~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~ 1036 (1345)
.++.+.+..++|+......+.- |..+-. .+.-.++++++|++. ...|.|.|-+|+.+||.|+... .
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~--~~~~~l~~l~~Eie~-----kEeE~e~lq~~~d~Lk~~Ie~Q--~-- 328 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQ--HMEKKLEMLKSEIEE-----KEEEIEKLQKENDELKKQIELQ--G-- 328 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhc--C--
Confidence 3455556666666554444441 111110 112256777777774 2348899999999999988742 0
Q ss_pred chhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1037 SSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEA 1116 (1345)
Q Consensus 1037 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ 1116 (1345)
++. + +-| .|..+-+-|..+ ..+.+.+++.
T Consensus 329 ------iS~--------------------------~---dve-----~mn~Er~~l~r~-----------l~~i~~~~d~ 357 (581)
T KOG0995|consen 329 ------ISG--------------------------E---DVE-----RMNLERNKLKRE-----------LNKIQSELDR 357 (581)
T ss_pred ------CCH--------------------------H---HHH-----HHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 000 0 111 133333323322 2344455555
Q ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHH------HHHHhcccCc-hh-hHHHHHH
Q 000699 1117 EKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEG-IEDVKK------AAAKAGVRGA-ES-KFINVLA 1187 (1345)
Q Consensus 1117 ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~g-i~~vk~------aaakag~kg~-~~-~f~~~la 1187 (1345)
.-+-+=|++.-.+ ..+-+|+-+.+++-.--|+|--| +.+-|- +|+=-|+.+. += .|++.|-
T Consensus 358 l~k~vw~~~l~~~----------~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~ 427 (581)
T KOG0995|consen 358 LSKEVWELKLEIE----------DFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELL 427 (581)
T ss_pred HHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHH
Confidence 5444444444322 24456666777776666666666 333333 2333344441 11 3999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000699 1188 AEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH 1267 (1345)
Q Consensus 1188 ae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh 1267 (1345)
.||+--=++++.|---|.+--..+. -+++|--|--|++.-+|..|+.---.-++ .++.+-.|..++||+|-++-
T Consensus 428 ~ei~~~~~~~~~~~~tLq~~~~~~~---~~i~E~~~~l~~~~~el~~~~~~~~~~k~---e~eee~~k~~~E~e~le~~l 501 (581)
T KOG0995|consen 428 DEISEELHEAENELETLQEHFSNKA---STIEEKIQILGEIELELKKAESKYELKKE---EAEEEWKKCRKEIEKLEEEL 501 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999888888887666655433332 24567777888888888877754433332 34556667777888887777
Q ss_pred hhhHHHHHHHH
Q 000699 1268 EMEVSTLNEII 1278 (1345)
Q Consensus 1268 ~~e~~t~~~~l 1278 (1345)
..+=.+|++-+
T Consensus 502 ~~l~l~~~~~m 512 (581)
T KOG0995|consen 502 LNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHH
Confidence 77777777666
No 114
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.14 E-value=2.5e+02 Score=37.96 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHH--HHHHHHHhhhhhhhHhhhchHHHH
Q 000699 1189 EISALKVARE--KERQYLRDENKGLQAQLRDTAEAV 1222 (1345)
Q Consensus 1189 e~s~lr~ere--ker~~l~~en~~l~~qlrdtaeav 1222 (1345)
|+..|+.+-. ++.+-|+.+.+.|..+|+-=++-.
T Consensus 482 el~~l~~~i~~~~~~~~l~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 482 ELEELEEELSREKEEAELREEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333 555566777777777776554444
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=78.98 E-value=1.1 Score=48.53 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=31.1
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||.... + .+..++..+-. + +..+....|+-||++|+||||.+..
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~l~~-~---~~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAALRQ-L---AAGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHHHHH-H---HhcCCCCeEEEECCCCCCHHHHHHH
Confidence 3577877663 2 34445544331 1 2245677899999999999998743
No 116
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.37 E-value=1.8e+02 Score=36.15 Aligned_cols=92 Identities=27% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhh
Q 000699 913 AKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTK 992 (1345)
Q Consensus 913 ~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~ 992 (1345)
++-+-+++-|+--+||...|..- .|. -|.||.++.|- +++|.--+..+...|...+. -.
T Consensus 293 Reasle~Enlqmr~qqleeente------lRs-~~arlksl~dk-------laee~qr~sd~LE~lrlql~-------~e 351 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTE------LRS-LIARLKSLADK-------LAEEDQRSSDLLEALRLQLI-------CE 351 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHH-------HH
Confidence 34466777777778887766441 122 34566666553 22333222223333322210 00
Q ss_pred HH-HHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 000699 993 IE-LKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQY 1030 (1345)
Q Consensus 993 ~E-~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~ 1030 (1345)
-+ -+|.-+-|.+|+ . |||+.++=|.+||.+|+.
T Consensus 352 q~l~~rm~d~Lrrfq---~--ekeatqELieelrkeleh 385 (502)
T KOG0982|consen 352 QKLRVRMNDILRRFQ---E--EKEATQELIEELRKELEH 385 (502)
T ss_pred HHHHHHHHHHHHHHH---H--hhHHHHHHHHHHHHHHHH
Confidence 01 123444444433 3 999999999999999985
No 117
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.35 E-value=2.9e+02 Score=38.29 Aligned_cols=160 Identities=29% Similarity=0.313 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHH-----------H
Q 000699 1090 ISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAM---QMAMEGNARMLEQYADLEEKHIQLLA-----------R 1155 (1345)
Q Consensus 1090 IslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al---~~a~~ghar~~e~y~~l~ek~~~l~~-----------~ 1155 (1345)
|.-.+-|..+-+..|+.|++++.-.+.=+.--+|-+.|. |-||+|--+++++--+|=+|-..-.+ +
T Consensus 1541 i~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~ 1620 (1758)
T KOG0994|consen 1541 IARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQ 1620 (1758)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666767666554444333333333332 45678888888776554333221111 0
Q ss_pred HHHHHhhHHHHHHHHHHhcccCchhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhh
Q 000699 1156 HRKIQEGIEDVKKAAAKAGVRGAESKFIN--VLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLK 1233 (1345)
Q Consensus 1156 hr~i~~gi~~vk~aaakag~kg~~~~f~~--~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~ 1233 (1345)
-+..-.-+++||.-|++-+ .+++-|- +=+|-.+|++|+. .++ +|.+-.|+|. +||-+
T Consensus 1621 ~~eL~~~~e~lk~~~~qns---~~A~~a~~~a~sa~~~A~~a~q---------~~~----~lq~~~~~~~---~l~~~-- 1679 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNS---AEAKQAEKTAGSAKEQALSAEQ---------GLE----ILQKYYELVD---RLLEK-- 1679 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHH---------HHH----HHHHHHHHHH---HHHHH--
Confidence 0111111233343333311 1222221 1123334444421 222 3333344433 33332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhH
Q 000699 1234 EAEEAVAAARKRAMEAEQETVTAYKQ-IDQLKKKHEMEV 1271 (1345)
Q Consensus 1234 eaeea~~~a~~~~~~~~qe~~k~~~q-~~klk~kh~~e~ 1271 (1345)
-+ +....|++||..+.+|++||-.| .+||++--++|.
T Consensus 1680 r~-~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1680 RM-EGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred Hh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23456788899999999887544 567776666663
No 118
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.84 E-value=1 Score=52.49 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.9
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHHHhcC-CcccEeecCCCCCCcceeecC
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVENCLSG-FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVdsvLeG-yNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+||.+-.....+..++..+ ...++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 45555433333566677654 4566665543 234699999999999999976
No 119
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.83 E-value=0.78 Score=43.71 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=15.6
Q ss_pred EeecCCCCCCcceeecCC
Q 000699 169 VFAYGQTGSGKTYTMWGP 186 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~G~ 186 (1345)
++.+|+||+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 578899999999999763
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.70 E-value=2.3e+02 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 000699 1156 HRKIQEGIEDVKKAAAKA 1173 (1345)
Q Consensus 1156 hr~i~~gi~~vk~aaaka 1173 (1345)
..++.+.+..=|-+|+||
T Consensus 141 ~~kLLe~lqsdk~t~SRA 158 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRA 158 (617)
T ss_pred HHHHHhhhcccchHHHHH
Confidence 455666666666666665
No 121
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.41 E-value=85 Score=36.39 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHhcccCchhhHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 000699 1142 YADLEEKHIQLLARHRKIQEG----------IEDVKKAAAKAGVRGAESKFINVLAA---EISALKVAREKERQYLRD 1206 (1345)
Q Consensus 1142 y~~l~ek~~~l~~~hr~i~~g----------i~~vk~aaakag~kg~~~~f~~~laa---e~s~lr~ereker~~l~~ 1206 (1345)
=|.+||.|..-|.+--+-..| .+-|+..+-+-|- .+..|++.|-. +|..++.+-+++|+-+|+
T Consensus 38 Ra~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~--~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke 113 (269)
T cd07673 38 RATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLAN--CHLELVRKLQELIKEVQKYGEEQVKSHKKTKE 113 (269)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356666666655554443222 3444444433222 23567776644 566666666666666553
No 122
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.16 E-value=1.2e+02 Score=33.89 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=89.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1132 MEGNARMLEQYADLEEKHIQLLA----RHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDE 1207 (1345)
Q Consensus 1132 ~~ghar~~e~y~~l~ek~~~l~~----~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~e 1207 (1345)
|..|.+. |.|+..=|||.-. .=+..-+-|++.|+-..+.. +-...+++|..-|+. .-..++.|
T Consensus 4 ~~~He~a---f~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~------k~m~ei~~eN~~L~e----pL~~a~~e 70 (201)
T PF13851_consen 4 MKNHEKA---FQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNE------KLMAEISQENKRLSE----PLKKAEEE 70 (201)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhH----HHHHHHHH
Confidence 5566654 5777777887643 33455577888888766543 344555555555544 22334556
Q ss_pred hhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000699 1208 NKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNE 1276 (1345)
Q Consensus 1208 n~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1276 (1345)
+..|+.+|++=----++-..+-.||+..++-+..-+-.....+|..+++.++-|.|.+++..=|-.+.|
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766566666677788888888888888888888888888888888888888766655544
No 123
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.73 E-value=2.3e+02 Score=36.29 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000699 1135 NARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKA 1173 (1345)
Q Consensus 1135 har~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaaka 1173 (1345)
..-+.++|.+|.++...+-..|..|.+.|.+..+.=..|
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555544443
No 124
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.65 E-value=53 Score=32.65 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd 1217 (1345)
.+.+|-.|++.+..|...++.+-..+.+.+.+- +|-..|. |
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~-----------------------------------~EL~~l~----~ 44 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKAL-----------------------------------EELEKLA----D 44 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHcCC----C
Confidence 578899999999999888888887777665432 2222222 4
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1218 TAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1218 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
.+.--.--|+.||. +.-++|...=++|...++.+..++.++++.+.++..
T Consensus 45 d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 45 DAEVYKLVGNVLVK-QEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred cchHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556678999998 677788888888888888888888888887766543
No 125
>PRK08727 hypothetical protein; Validated
Probab=76.57 E-value=1.4 Score=49.12 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=27.5
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCc-ccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFN-SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyN-aTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||..+.... + .+.. +..+..|.. -.|+-||++|+||||-+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~-----~~~~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQ-----LQALAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHH-----HHHHHhccCCCeEEEECCCCCCHHHHHHH
Confidence 3578888664333 2 1221 112222332 3599999999999998855
No 126
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.24 E-value=2 Score=47.04 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=30.0
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+||.++.. .. ..++.. +..++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~~-~~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAG-EN-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccC-Cc-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 46889988732 22 233332 2223221 13455799999999999998744
No 127
>PRK03918 chromosome segregation protein; Provisional
Probab=76.10 E-value=2.7e+02 Score=36.90 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=5.1
Q ss_pred HHhhHHHHHHH
Q 000699 1159 IQEGIEDVKKA 1169 (1345)
Q Consensus 1159 i~~gi~~vk~a 1169 (1345)
+..-|.++++.
T Consensus 417 ~~~~i~eL~~~ 427 (880)
T PRK03918 417 LKKEIKELKKA 427 (880)
T ss_pred HHHHHHHHHHH
Confidence 33444455544
No 128
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=75.42 E-value=1e+02 Score=39.14 Aligned_cols=93 Identities=25% Similarity=0.286 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Q 000699 1098 NELEASRSLAEKQKQELEAEKK-CVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVR 1176 (1345)
Q Consensus 1098 ~eLe~~r~~aek~~~el~~ek~-c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~k 1176 (1345)
.-+...+.....+..+|..=+. .-+++..+|...- -|++.++++++...+..++
T Consensus 251 ~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~------~e~~~~~~~~~~~~le~~~------------------- 305 (582)
T PF09731_consen 251 SLIAHAKERIDALQKELAELKEEEEEELERALEEQR------EELLSKLREELEQELEEKR------------------- 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-------------------
Confidence 4466667777777776644332 3344555544421 1445555555554444433
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHhhhchHHHHHhh
Q 000699 1177 GAESKFINVLAAEISALKVAREKERQYLRDE-NKGLQAQLRDTAEAVQAA 1225 (1345)
Q Consensus 1177 g~~~~f~~~laae~s~lr~ereker~~l~~e-n~~l~~qlrdtaeav~aa 1225 (1345)
.++...++.+-++++..|++. +..|+.||+=.+++....
T Consensus 306 ----------~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~ 345 (582)
T PF09731_consen 306 ----------AELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEH 345 (582)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244555666666666666665 556888888777775443
No 129
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.19 E-value=94 Score=35.70 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=68.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHhcccCchhhHH
Q 000699 1114 LEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRK----------IQEGIEDVKKAAAKAGVRGAESKFI 1183 (1345)
Q Consensus 1114 l~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~----------i~~gi~~vk~aaakag~kg~~~~f~ 1183 (1345)
++.-+....||-+-|+. =|.+||.|-.-|.+--+ ......-|+..+.+-|-- +..|+
T Consensus 14 ~k~g~~~~kel~~flke-----------Ra~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~--H~~l~ 80 (261)
T cd07674 14 MKHGQISTKELADFVRE-----------RAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALC--HLELM 80 (261)
T ss_pred HHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34445566677666652 36677777766665544 223344555555554433 35677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------
Q 000699 1184 NVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAY------ 1257 (1345)
Q Consensus 1184 ~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~------ 1257 (1345)
+.|-.++.-+..=+++=+++ .+....+.-+|.++||.+-.. ..++.-|++++-.+-.|.+++.
T Consensus 81 ~~L~~~~~~i~~~~~~~~k~----~kk~~e~~~~~~~~~q~~q~~-------~~~l~kaK~~Y~~~cke~e~a~~~~~s~ 149 (261)
T cd07674 81 RKLNDLIKDINRYGDEQVKI----HKKTKEEAIGTLEAVQSLQVQ-------SQHLQKSRENYHSKCVEQERLRREGVPQ 149 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 77765333333222222222 222345555688888876533 3344445555544444444443
Q ss_pred HHHHHHhhhhhh
Q 000699 1258 KQIDQLKKKHEM 1269 (1345)
Q Consensus 1258 ~q~~klk~kh~~ 1269 (1345)
++++|++.|.+.
T Consensus 150 k~leK~~~K~~k 161 (261)
T cd07674 150 KELEKAELKTKK 161 (261)
T ss_pred HHHHHHHHHHHH
Confidence 566666655443
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.71 E-value=2.7e+02 Score=36.14 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhhHhhhchHHHHH------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1199 KERQYLRDENKGLQAQLRDTAEAVQ------AAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1199 ker~~l~~en~~l~~qlrdtaeav~------aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
++...|+++.+.|+.+|.+-.+-+. ...+|.=+|++++......+......+++.+.++++|++++++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544333332 2355666777777777777777777777777676666666553
No 131
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=74.38 E-value=1 Score=59.39 Aligned_cols=121 Identities=21% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHH
Q 000699 1141 QYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAE 1220 (1345)
Q Consensus 1141 ~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtae 1220 (1345)
.|-++.+....|=-..+....-|.|++..-..+|..-+ +-||.++.|--+...|+.||.+...
T Consensus 420 ~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-----------------eLek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 420 ELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-----------------ELEKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566677778887766555555433 3456667777778888888888888
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhHHHHHHHH-hhcCCCcccC
Q 000699 1221 AVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVT----AYKQIDQLKKKHEMEVSTLNEII-AESRLPKETI 1288 (1345)
Q Consensus 1221 av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k----~~~q~~klk~kh~~e~~t~~~~l-aes~lp~~~~ 1288 (1345)
|++++=.-..||- -....+.++.++ ---+||.++|+|...|..|+.-| .|.+.-..++
T Consensus 483 ~l~~~E~~~lRl~----------~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~ 545 (859)
T PF01576_consen 483 ALEAEEQKKLRLQ----------VELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEAL 545 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 8887544444442 222222222211 11245666777777777776666 4444444444
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=1.9 Score=51.60 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=19.2
Q ss_pred HHHHhcCC-cccEeecCCCCCCcceee
Q 000699 158 VENCLSGF-NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 158 VdsvLeGy-NaTIfAYGQTGSGKTYTM 183 (1345)
+..++.|. ...++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44445444 334999999999999887
No 133
>PRK08181 transposase; Validated
Probab=73.80 E-value=2.4 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.8
Q ss_pred cCCcccEeecCCCCCCcceeecC
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 89999999999999876
No 134
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.34 E-value=64 Score=32.42 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd 1217 (1345)
.+.+|-.||+....+...+..+-..+.+.+.+ .+|-.+|. |
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v-----------------------------------~~eL~~l~----~ 48 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKA-----------------------------------LEELERLP----D 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHcCC----C
Confidence 46677777777777777766666666555443 23333333 6
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1218 TAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1218 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
-+.-...-|-.||+ +.-++|...=++|....+-...++.++++.|.++++.-=..|.+.|
T Consensus 49 d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 49 DTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred cchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888999999 8899999999999999999999999999999998876555555544
No 135
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.10 E-value=2.1e+02 Score=34.24 Aligned_cols=154 Identities=26% Similarity=0.382 Sum_probs=87.4
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHI--QLL 1153 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~--~l~ 1153 (1345)
++-+.+|...+.+ ...||.+|+..|.++.-+..|+.. +.-++--+-.-|+-+|-|+ .|+
T Consensus 23 ~~l~~~~~sL~qe----n~~Lk~El~~ek~~~~~L~~e~~~---------------lr~~sv~~~~~aEqEEE~isN~Ll 83 (310)
T PF09755_consen 23 EQLRKRIESLQQE----NRVLKRELETEKARCKHLQEENRA---------------LREASVRIQAKAEQEEEFISNTLL 83 (310)
T ss_pred HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544443 455666666666666655555432 2222333344577888886 455
Q ss_pred HHHHHHHhhHHHHHHHHHHhc--ccCchhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhHhhhchH---HH
Q 000699 1154 ARHRKIQEGIEDVKKAAAKAG--VRGAESKFINVLAAEISALKVARE-------KERQYLRDENKGLQAQLRDTA---EA 1221 (1345)
Q Consensus 1154 ~~hr~i~~gi~~vk~aaakag--~kg~~~~f~~~laae~s~lr~ere-------ker~~l~~en~~l~~qlrdta---ea 1221 (1345)
-| |..+||--..-. +---+-...|+|..-|..||.|+- +|.+|+- -.|+.+|.+-. .+
T Consensus 84 Kk-------l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V---~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 84 KK-------LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLV---NKLQKKIERLEKEKSA 153 (310)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence 44 555665433321 111244678999999999988763 2222221 23455554321 24
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhh
Q 000699 1222 VQAAGELLVRLKEAEEAVAAARKRAMEAEQET--VTAYKQIDQLKK 1265 (1345)
Q Consensus 1222 v~aagellvrl~eaeea~~~a~~~~~~~~qe~--~k~~~q~~klk~ 1265 (1345)
+|.. |-|||. .-|--+++...|||. .+|-|||++|-.
T Consensus 154 ~q~~---le~Lr~----EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 154 KQEE---LERLRR----EKVDLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred hHHH---HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 335554 345578888888884 799999999853
No 136
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.07 E-value=1.6 Score=54.98 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.5
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45666777889999999999999999954
No 137
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=72.92 E-value=2.4e+02 Score=34.76 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHhcccCchhh
Q 000699 1107 AEKQKQELEAEKKCVEELHEAMQMAMEGN----ARMLEQYADLEEKHIQLL-ARHRKIQEGIEDVKKAAAKAGVRGAESK 1181 (1345)
Q Consensus 1107 aek~~~el~~ek~c~eel~~al~~a~~gh----ar~~e~y~~l~ek~~~l~-~~hr~i~~gi~~vk~aaakag~kg~~~~ 1181 (1345)
.+++-.=+...+.|.+-+.+- +..+.+| ..+.++|.-...-|..|| +-|||-.- .+. =.+
T Consensus 303 ~~~l~~yl~~~~~~~~~~~~~-~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~-----~~k---------~~~ 367 (412)
T PF04108_consen 303 GERLPSYLAAFHDFEERWEEE-KESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAV-----RDK---------MKK 367 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---------HHH
Confidence 334444555666666655322 2233333 345567777777887765 33444221 000 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDEN 1208 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en 1208 (1345)
-+..++.||..|+.+--+.|+.|+.++
T Consensus 368 i~~~~~eeL~~l~eeE~~~Re~F~~e~ 394 (412)
T PF04108_consen 368 IIREANEELDKLREEEQRRREAFLKEY 394 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667788999999999999999998875
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=72.39 E-value=1.8 Score=52.56 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=32.0
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
...|+||........ .-.|.... -|...-.+.---||-||.+|+||||-|..
T Consensus 81 ~~~ytFdnFv~g~~N-~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGPSN-RLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCCch-HHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence 457999986654443 33333322 22222223344589999999999999964
No 139
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.36 E-value=2.5 Score=48.16 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=34.2
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
++|.|..+-.....+..+|.... .++..+- -...++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHHH-HHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 45555444444556777777765 4555555 334567899999999998876
No 140
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.33 E-value=1.3e+02 Score=38.08 Aligned_cols=54 Identities=28% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHHHHhh-ccCCCCCc------hhhhhHHHHhhHHHHHHHHHhh
Q 000699 926 VQQYKHERECNSIISQTREDKILRLES-LMDGVLPT------EEFMDEEFASLMHEHKLLKEKY 982 (1345)
Q Consensus 926 v~q~k~~~e~~~~~~~~re~ki~rles-l~dg~l~~------~~~~~ee~~~l~~e~k~l~~~~ 982 (1345)
+.|||. +-.-|.|.-|..|..|.+ ..-|.+.. -+++-.|...+..|+.+|...+
T Consensus 237 l~~Yk~---kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 237 LQQYKQ---KAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHH---HHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 556764 345677888888888877 33334433 3566677777777777766654
No 141
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.17 E-value=4.4e+02 Score=37.48 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhcccCc
Q 000699 1111 KQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKI----QEGIEDVKKAAAKAGVRGA 1178 (1345)
Q Consensus 1111 ~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i----~~gi~~vk~aaakag~kg~ 1178 (1345)
..||..-+.=.+++..++..+=..+..--.++.+++.+..++-.+.... .+..+++--+|..||+-++
T Consensus 332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~~ 403 (1353)
T TIGR02680 332 AEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPA 403 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3444433333444444555555555556666666666666666555443 4455677777888888874
No 142
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.07 E-value=1.4 Score=41.73 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.2
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999854
No 143
>PRK10436 hypothetical protein; Provisional
Probab=71.95 E-value=1.8 Score=53.36 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=23.8
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+..++..-++.|+..|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 35556667788999999999999999953
No 144
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=71.91 E-value=1.9 Score=53.46 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=23.9
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+..++..-.+.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45556677778899999999999999954
No 145
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.80 E-value=1.4 Score=48.26 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.1
Q ss_pred cEeecCCCCCCcceeec
Q 000699 168 SVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~ 184 (1345)
-+.-+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35567999999999983
No 146
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=71.69 E-value=1.5 Score=49.21 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.0
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
.+.|+--|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667778999999999983
No 147
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.32 E-value=3.6e+02 Score=36.14 Aligned_cols=32 Identities=38% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELEAEKKCVEELHE 1126 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~ek~c~eel~~ 1126 (1345)
+-|.+.||..|-..++++.+|+..+.|. ++.+
T Consensus 517 ~~l~I~lEk~rek~~kl~~ql~k~~~~~-e~~~ 548 (775)
T PF10174_consen 517 ERLEIELEKKREKHEKLEKQLEKLRANA-ELRD 548 (775)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCH-hhcc
Confidence 4566666666666666666666655553 4443
No 148
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.28 E-value=3.9e+02 Score=36.56 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 000699 1187 AAEISALKVAREKERQYLRDENKGLQA 1213 (1345)
Q Consensus 1187 aae~s~lr~ereker~~l~~en~~l~~ 1213 (1345)
+-||+++..--|+|++.|-++...|++
T Consensus 532 ~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 532 LEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888877
No 149
>PF13245 AAA_19: Part of AAA domain
Probab=71.21 E-value=1.9 Score=40.46 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
|..++. -+..++-.|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444555 333344589999999999854
No 150
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.11 E-value=3e+02 Score=35.05 Aligned_cols=118 Identities=26% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHHHH----HH------HHHHhhhhhhh
Q 000699 1144 DLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESK-FINVLAAEISALKVAREK----ER------QYLRDENKGLQ 1212 (1345)
Q Consensus 1144 ~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~-f~~~laae~s~lr~erek----er------~~l~~en~~l~ 1212 (1345)
+.+.+...+-.....++..++++|.--.++---..-.+ =+.+|-.||-..|.+-++ |. .-|..+-..++
T Consensus 271 ~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 271 EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 56666666667777777777777766555422221111 122333333333322111 10 11222222222
Q ss_pred HhhhchHHHHHh--------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1213 AQLRDTAEAVQA--------AGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKK 1265 (1345)
Q Consensus 1213 ~qlrdtaeav~a--------agellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1265 (1345)
.+| ++|++ .-+|-.-|.++-.=+-.|+..+..+.+|..+++.++++.|-
T Consensus 351 ~eL----ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 351 SEL----EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHH----HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222 22345555555555555666677777777777777777654
No 151
>PF12846 AAA_10: AAA-like domain
Probab=71.06 E-value=1.5 Score=48.64 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=16.3
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999885
No 152
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.85 E-value=1.3 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=13.0
Q ss_pred cccEeecCCCCCCcceee
Q 000699 166 NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM 183 (1345)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999877
No 153
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=70.81 E-value=2.7e+02 Score=34.72 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1133 EGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKG 1210 (1345)
Q Consensus 1133 ~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~ 1210 (1345)
-|.|+|.-....|.+.-..||+|=.-.|+-|++++|-++.-|||= +-+...+...||++++.+=.+=..|++.|.--
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp-~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~ 279 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRP-SKKQLETVQKELETARKELKKMEEYIDIEKPI 279 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 689999999999999999999999999999999999999999998 56899999999999999877666666655433
No 154
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=70.76 E-value=2.1 Score=43.66 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=20.8
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
++..++.|.+ ++..|+||+|||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3445556666 78899999999999875
No 155
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.49 E-value=2.1 Score=50.56 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44444443457789999999999999953
No 156
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=69.98 E-value=4.7e+02 Score=36.89 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHH
Q 000699 1095 ELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAME-----------------------GNARMLEQYADLEEKHIQ 1151 (1345)
Q Consensus 1095 eLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~-----------------------ghar~~e~y~~l~ek~~~ 1151 (1345)
+.|-.|-.....-.-...+|..|.-|-++|......-++ =|..+.+-|.++..+|.+
T Consensus 332 ~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q 411 (1294)
T KOG0962|consen 332 EERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQ 411 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444443333444455666777777777777644333 368899999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccC
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRG 1177 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg 1177 (1345)
+...-+.+..|+.+..+.|-++-+-|
T Consensus 412 ~~k~~~~~~s~~~~~~~~~~~~~~~l 437 (1294)
T KOG0962|consen 412 RKKDIAELETNALDLIKEITDREVSL 437 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998877665
No 157
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=69.32 E-value=2.5 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=19.5
Q ss_pred hcCCcccEeecCCCCCCcceeecC
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
+.--.+.|+-.|+||||||.||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333468899999999999999843
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=69.25 E-value=3.2e+02 Score=34.64 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 000699 1188 AEISALKVAREKERQYLRDENKGLQAQL 1215 (1345)
Q Consensus 1188 ae~s~lr~ereker~~l~~en~~l~~ql 1215 (1345)
.|+-.||. |+.++++|+..|+.|+
T Consensus 274 ~el~~l~~----E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 274 IELEELKQ----ERDHLQEEIQLLERQI 297 (511)
T ss_pred hcchhhHH----HHHHHHHHHHHHHHHH
Confidence 78888887 5667777888887777
No 159
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=68.54 E-value=1.9 Score=46.91 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=16.0
Q ss_pred ccEeecCCCCCCcceeec
Q 000699 167 SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~ 184 (1345)
+.|+-.|+||||||+||.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=68.45 E-value=2.8 Score=49.53 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=23.1
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|+++-.+. ..|+-||++|+||||.+.+
T Consensus 174 ~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 174 NFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 4677766554 6699999999999998865
No 161
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.43 E-value=1.2e+02 Score=33.75 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=25.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000699 1225 AGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH 1267 (1345)
Q Consensus 1225 agellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh 1267 (1345)
|-+.|.|....++-+..-+.....+....++|+.+|.+|+.|+
T Consensus 86 Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 86 AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665555555555555544
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.40 E-value=3.9e+02 Score=35.39 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 000699 1242 ARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTL 1274 (1345)
Q Consensus 1242 a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~ 1274 (1345)
|+.....++-..-+=-++|..||.|-..=|.-|
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444455555555544444444
No 163
>PRK11637 AmiB activator; Provisional
Probab=67.98 E-value=3e+02 Score=33.84 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=6.0
Q ss_pred CCcccCccC
Q 000699 1335 SWFSGYDRC 1343 (1345)
Q Consensus 1335 ~~~~~~~~~ 1343 (1345)
.|+.||-.+
T Consensus 354 ~~~~~~G~~ 362 (428)
T PRK11637 354 DWLQGYGLV 362 (428)
T ss_pred eccCCcccE
Confidence 488888543
No 164
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.71 E-value=2.6 Score=50.70 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.3
Q ss_pred CcccEeecCCCCCCcceeec
Q 000699 165 FNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999984
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.43 E-value=4.7e+02 Score=35.90 Aligned_cols=174 Identities=25% Similarity=0.352 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhc--cCCCCCchhhhhHHHHhhHHHH
Q 000699 898 LAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESL--MDGVLPTEEFMDEEFASLMHEH 975 (1345)
Q Consensus 898 laga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl--~dg~l~~~~~~~ee~~~l~~e~ 975 (1345)
|..--++|+.|+.-|..-...|.+|-+.++.|+.+-|-- .-|+.+--++|.+ .-.-++-++ .+.|+.+++...
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~----rer~~~~~~Ie~l~~k~~~v~y~~-~~~ey~~~k~~~ 257 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV----RERERKKSKIELLEKKKKWVEYKK-HDREYNAYKQAK 257 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccchHh-hhHHHHHHHHHH
Confidence 344567899999999999999999999999999988721 1233333333332 111121111 234444444444
Q ss_pred HHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCC
Q 000699 976 KLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPS 1055 (1345)
Q Consensus 976 k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~ 1055 (1345)
+.+ +.+++.+-++.. .+-| =+|.|-.|+.+++++.......=-.+..+
T Consensus 258 ~r~-------------k~~~r~l~k~~~---pi~~--~~eeLe~~~~et~~~~s~~~~~~~e~~~k-------------- 305 (1072)
T KOG0979|consen 258 DRA-------------KKELRKLEKEIK---PIED--KKEELESEKKETRSKISQKQRELNEALAK-------------- 305 (1072)
T ss_pred HHH-------------HHHHHHHHHhhh---hhhh--hhhhHHhHHHhHHHHHHHHHHHHHHHHHH--------------
Confidence 433 334455554443 3333 34556667777777665433110001111
Q ss_pred CCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000699 1056 LVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMA 1131 (1345)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a 1131 (1345)
.-..+|+.+ +++- -++++.++||+.+..+++++..+..=||--.++.+-|+-+
T Consensus 306 ---------------~~~~~ek~~----~~~~----~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 306 ---------------VQEKFEKLK----EIED----EVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred ---------------HHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 111233322 2222 2578899999999999999999988777666666666654
No 166
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=67.40 E-value=82 Score=35.66 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=29.3
Q ss_pred HHHHHHHHHH-hhhhhcCchhHHHHHHHHHHHHHHHHHhhhc
Q 000699 994 ELKRVQDELE-HYRNFYDLGEKEVLLEEVQDLRSQLQYYIDS 1034 (1345)
Q Consensus 994 E~k~vqeel~-~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~ 1034 (1345)
|.-...|.+. .|..|.+ |.+.|+.||..|+.+|+.+.++
T Consensus 27 EVdeFLD~V~~dye~~l~--e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 27 EVDEFLDDVIDDYEQLLD--ENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhh
Confidence 4445555554 3667775 9999999999999999987765
No 167
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.32 E-value=4.5 Score=40.83 Aligned_cols=102 Identities=33% Similarity=0.432 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccCch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH-------HHhhhhhhhh--
Q 000699 1165 DVKKAAAKAGVRGAE----SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA-------VQAAGELLVR-- 1231 (1345)
Q Consensus 1165 ~vk~aaakag~kg~~----~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea-------v~aagellvr-- 1231 (1345)
||....-+-+.+|-. -.|+..|+.++..|.. |...|+.++..|+.+|.+=-+- +-.|.+.--+
T Consensus 5 di~~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~----e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 5 DIRNKEFKKSMRGYDPDEVDDFLDELAEELERLQR----ENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHH----EEEEEEEHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCT--------------------------
T ss_pred HHhhCccCCCCCCcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 344444445556632 2599999999999984 5666777777777776553221 1112211111
Q ss_pred ---hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhh
Q 000699 1232 ---LKEAEEAVAAARKRAM----EAEQETVTAYKQIDQLKKKHEME 1270 (1345)
Q Consensus 1232 ---l~eaeea~~~a~~~~~----~~~qe~~k~~~q~~klk~kh~~e 1270 (1345)
.++|+.-+..|++.+. .+..+.+++..+++.||+.+..+
T Consensus 81 ~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~~ 126 (131)
T PF05103_consen 81 AEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQAEQF 126 (131)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333444332 35556666666667666665543
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.20 E-value=3.8e+02 Score=34.83 Aligned_cols=133 Identities=23% Similarity=0.315 Sum_probs=67.9
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--
Q 000699 1075 FEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQL-- 1152 (1345)
Q Consensus 1075 le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l-- 1152 (1345)
++.-..+-.++..+|-..--.|=.+++..|......+.|....-..-++|..-++....-=..==|.|..|+..|-.+
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455556666777778554444444444444333333333333223333444444333322222233344444433322
Q ss_pred ----HHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhh
Q 000699 1153 ----LARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGEL 1228 (1345)
Q Consensus 1153 ----~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagel 1228 (1345)
-+-=+||+|=|..|||-= +||.-+- .+-+.|.+|...|..+|.-|=-. +-||
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQk-----------------~eI~KIl----~DTr~lQkeiN~l~gkL~RtF~v---~dEl 538 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQK-----------------EEIEKIL----SDTRELQKEINSLTGKLDRTFTV---TDEL 538 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHHH-----------------HHHHHHH----HHHHHHHHHHHHHHHHHHhHHHH---HHHH
Confidence 122367888888887752 3444332 35677888888888888877433 4455
Q ss_pred hhh
Q 000699 1229 LVR 1231 (1345)
Q Consensus 1229 lvr 1231 (1345)
|.|
T Consensus 539 ifr 541 (594)
T PF05667_consen 539 IFR 541 (594)
T ss_pred HHH
Confidence 554
No 169
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.22 E-value=3.4e+02 Score=35.25 Aligned_cols=60 Identities=27% Similarity=0.420 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~ 1154 (1345)
++|+..|+.-+.-.+.++.|++.-+..-.++.+-+...-....++-++|+ +.++=.+||.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~ 390 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 55666677777777777777777766666677666666666666666666 5555555554
No 170
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=66.08 E-value=4.1 Score=53.77 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=16.9
Q ss_pred CCcccEeecCCCCCCcceee
Q 000699 164 GFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 164 GyNaTIfAYGQTGSGKTYTM 183 (1345)
|-+.+||.||++|+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44556789999999999987
No 171
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.06 E-value=3.1 Score=47.57 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=21.5
Q ss_pred HHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
+..++..-.+.|+-.|.||||||.||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 4555555566788899999999999843
No 172
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=4.3e+02 Score=34.96 Aligned_cols=114 Identities=25% Similarity=0.290 Sum_probs=79.0
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000699 1075 FEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1075 le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~ 1154 (1345)
||..--.+|.-+++.|--..-+-.-||.++..|-.+.++++ .|+-.+.....---+|-++|+|+...-..+--
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~-------~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~ 601 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE-------DLQIELEKSEAKLEQIQEQYAELELELEIEKF 601 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666655555555666777776666665553 34444444444444678899999999988888
Q ss_pred HHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Q 000699 1155 RHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKV 1195 (1345)
Q Consensus 1155 ~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ 1195 (1345)
+-+++.|-++-.|+-+.+-|+.-.|.-=.-.|+-||..-|.
T Consensus 602 k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 99999999999999999888877765667777777776554
No 173
>PRK06921 hypothetical protein; Provisional
Probab=65.66 E-value=3.5 Score=47.22 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=21.4
Q ss_pred hhHHHHhc---CCcccEeecCCCCCCcceeecC
Q 000699 156 PLVENCLS---GFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 156 PLVdsvLe---GyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..++++-. +....|+-||++|+||||.+.+
T Consensus 104 ~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 104 EYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 45555432 2345688999999999999865
No 174
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.59 E-value=1.9e+02 Score=38.00 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHH---HhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1138 MLEQYADLEEKHIQLLA----RHRKI---QEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKG 1210 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~----~hr~i---~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~ 1210 (1345)
+..++++|+.++.+|.. +|-.| ...|+++++.-+.. =.+++.++.+++.+++ ..-+.
T Consensus 293 L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e-----~~~~~~~~~~~~~~a~-----------~~~~~ 356 (754)
T TIGR01005 293 LRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE-----LQKITKSLLMQADAAQ-----------ARESQ 356 (754)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-----------HHHHH
Confidence 34566666666665554 35443 44666666643221 1134444444433333 33455
Q ss_pred hhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1211 LQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAY 1257 (1345)
Q Consensus 1211 l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~ 1257 (1345)
|+.||.+.-..+......-++|++-+.-+.++++....+.+..+++.
T Consensus 357 L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 357 LVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555556666555555555555555544444443
No 175
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.58 E-value=4.4e+02 Score=35.05 Aligned_cols=82 Identities=33% Similarity=0.357 Sum_probs=59.7
Q ss_pred cCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHH----HHHHHHHHHHh
Q 000699 1068 KETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQE----------LEAEKKCVE----ELHEAMQMAME 1133 (1345)
Q Consensus 1068 ~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~e----------l~~ek~c~e----el~~al~~a~~ 1133 (1345)
+++.|+.|-+| ..-.|..++.=-.||..||...|.-..++..| |..+..|.| -|.+.|+-+=.
T Consensus 14 g~~~Ee~Ll~e---sa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 14 GEEREESLLQE---SASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred chhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888 44567888888888888888888777666554 444544443 35566666667
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000699 1134 GNARMLEQYADLEEKHIQL 1152 (1345)
Q Consensus 1134 ghar~~e~y~~l~ek~~~l 1152 (1345)
--+|+|--|.||+|.-+.|
T Consensus 91 rE~rll~dyselEeENisl 109 (717)
T PF09730_consen 91 REARLLQDYSELEEENISL 109 (717)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 7899999999999988865
No 176
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.31 E-value=31 Score=41.10 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhH
Q 000699 1195 VAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH---EMEV 1271 (1345)
Q Consensus 1195 ~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh---~~e~ 1271 (1345)
.||..|.+.|+-+|..|..||- |++| +++|-+---+ .-|.-...+.+||..+..|++-+++.. +.|-
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~------~~~~-vf~k~k~~~q---~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLF------HVRE-VFMKTKGDIQ---HLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH------HHHH-HHHHhcchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 4788999999999999999985 5555 6666543211 123334456788999999999888766 4567
Q ss_pred HHHHHHHhhcCCCcccCCcccc
Q 000699 1272 STLNEIIAESRLPKETIRPAFD 1293 (1345)
Q Consensus 1272 ~t~~~~laes~lp~~~~~~~~~ 1293 (1345)
.+||+-|||..-=.-+|-..|.
T Consensus 165 q~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 165 QTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7888888887654444444444
No 177
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.20 E-value=4.8e+02 Score=35.28 Aligned_cols=92 Identities=26% Similarity=0.321 Sum_probs=47.3
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1081 RWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMA-MEGNARMLEQYADLEEKHIQLLARHRKI 1159 (1345)
Q Consensus 1081 ~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a-~~ghar~~e~y~~l~ek~~~l~~~hr~i 1159 (1345)
.-.+.+..|..+...+=.-++....+.+.++..++.-..=-++++...... ..-=...+.++.++..+...++..++.+
T Consensus 502 e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~~~~~~~~~~ 581 (908)
T COG0419 502 EIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554444422333444444444444444444444444444442 2222223337777778888888888888
Q ss_pred H---hhHHHHHHHHHH
Q 000699 1160 Q---EGIEDVKKAAAK 1172 (1345)
Q Consensus 1160 ~---~gi~~vk~aaak 1172 (1345)
. +-|.++.+....
T Consensus 582 ~~~~~~l~~~r~~~~~ 597 (908)
T COG0419 582 RTRKEELEELRERLKE 597 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7 666666643333
No 178
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.54 E-value=3.3e+02 Score=33.08 Aligned_cols=133 Identities=25% Similarity=0.371 Sum_probs=70.8
Q ss_pred CchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000699 1069 ETAEEKFEQERTRWTEVESGWISLAEELRNELEASR---SLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADL 1145 (1345)
Q Consensus 1069 ~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r---~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l 1145 (1345)
+|.-+-||+||.+.+- -+--+++.-| ---.|++|.|+.||+--+-|- -|-|+---.++-.-+++
T Consensus 138 DDlt~~LEKEReqL~Q----------QiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis---~mLilEcKka~~KaaEe 204 (561)
T KOG1103|consen 138 DDLTAHLEKEREQLQQ----------QIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQIS---LMLILECKKALLKAAEE 204 (561)
T ss_pred chHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 4556678888887662 1111121111 112467788888887766542 23344444444444444
Q ss_pred HHHHHHHHHHH----HHHHhhHHHHHHHHHHhcccCc--h---hhHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhH
Q 000699 1146 EEKHIQLLARH----RKIQEGIEDVKKAAAKAGVRGA--E---SKFINVLAAEISALKVAREKER---QYLRDENKGLQA 1213 (1345)
Q Consensus 1146 ~ek~~~l~~~h----r~i~~gi~~vk~aaakag~kg~--~---~~f~~~laae~s~lr~ereker---~~l~~en~~l~~ 1213 (1345)
--|--++.-+- .++--|=++ ||---.||- + -+.|.-|--|..-||+++|+|- +.||.||.+|+.
T Consensus 205 gqKA~ei~Lklekdksr~~k~eee----~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 205 GQKAEEIMLKLEKDKSRTKKGEEE----AAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred hhhHHHHHHhhccCccccCCChHH----HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332211 111111111 111122331 1 1366677778888999988874 679999999998
Q ss_pred hhhch
Q 000699 1214 QLRDT 1218 (1345)
Q Consensus 1214 qlrdt 1218 (1345)
-.||-
T Consensus 281 iVkdl 285 (561)
T KOG1103|consen 281 IVKDL 285 (561)
T ss_pred HHhhh
Confidence 87774
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.42 E-value=3.3 Score=45.10 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=20.4
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4555565555556668999999999883
No 180
>PRK09183 transposase/IS protein; Provisional
Probab=64.00 E-value=4.4 Score=46.16 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.3
Q ss_pred cEeecCCCCCCcceeecC
Q 000699 168 SVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G 185 (1345)
.|+-+|++|+||||.+.+
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 366799999999998865
No 181
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=63.98 E-value=4.3 Score=47.87 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=24.2
Q ss_pred HHHhhchhhHHHHhcCC-cccEeecCCCCCCcceeec
Q 000699 149 VFQLVGVPLVENCLSGF-NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 149 VFe~vv~PLVdsvLeGy-NaTIfAYGQTGSGKTYTM~ 184 (1345)
+++..+..++.+.+.|. ---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 34444445555555553 3346889999999999974
No 182
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=63.86 E-value=13 Score=48.03 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhcccC
Q 000699 1162 GIEDVKKAAAKAGVRG 1177 (1345)
Q Consensus 1162 gi~~vk~aaakag~kg 1177 (1345)
.+-||-+++-++||--
T Consensus 1029 alIdm~a~~de~GVmD 1044 (1102)
T KOG1924|consen 1029 ALIDMNAEGDETGVMD 1044 (1102)
T ss_pred HHhccccccchhhhHH
Confidence 3345566666666654
No 183
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=63.55 E-value=56 Score=39.68 Aligned_cols=60 Identities=30% Similarity=0.442 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcCccchhhhHHH-HHHHHHHHhhhhhc---------------CchhHHHHH-----------HHHHHHH
Q 000699 973 HEHKLLKEKYENHPEVLGTKIEL-KRVQDELEHYRNFY---------------DLGEKEVLL-----------EEVQDLR 1025 (1345)
Q Consensus 973 ~e~k~l~~~~~~~pev~~~~~E~-k~vqeel~~~~~~~---------------d~~ErE~Ll-----------~EI~~Lr 1025 (1345)
.|.+-|+.--.-|-|+..-+-|| .|+.+|+.+.+.|+ |..|-|||| +||+.||
T Consensus 453 aerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk 532 (593)
T KOG4807|consen 453 AERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK 532 (593)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556666555667888888885 49999999888874 455778877 5888888
Q ss_pred HHHHHhh
Q 000699 1026 SQLQYYI 1032 (1345)
Q Consensus 1026 ~ql~~~~ 1032 (1345)
+.||.++
T Consensus 533 DELQtal 539 (593)
T KOG4807|consen 533 DELQTAL 539 (593)
T ss_pred HHHHHHH
Confidence 8888765
No 184
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=63.23 E-value=2.1e+02 Score=30.54 Aligned_cols=96 Identities=25% Similarity=0.321 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHH-----------HHHHHhcccCchhhHHHHHHHH
Q 000699 1124 LHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQE---GIEDVK-----------KAAAKAGVRGAESKFINVLAAE 1189 (1345)
Q Consensus 1124 l~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~---gi~~vk-----------~aaakag~kg~~~~f~~~laae 1189 (1345)
-.+|++.|+.+=.++-+...++.+....|..+=+.|.+ .|.++= =.|||||-.|.| | ..+|.|
T Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~g--F-~vvA~e 83 (213)
T PF00015_consen 7 AQEANEEAVEEMEEIQESIEEIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAARAGEAGRG--F-AVVADE 83 (213)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH--H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchh--H-HHHHHH
Confidence 33444444444444555555555555444444443333 232222 258999988876 4 356666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHH
Q 000699 1190 ISALKVAREKERQYLRDENKGLQAQLRDTAEAV 1222 (1345)
Q Consensus 1190 ~s~lr~ereker~~l~~en~~l~~qlrdtaeav 1222 (1345)
|..|=..=..--.....--..++.+...+.+.+
T Consensus 84 ir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~ 116 (213)
T PF00015_consen 84 IRKLAEQTSESAKEISEIIEEIQEQISQVVESM 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Confidence 666644333333333333344444433333333
No 185
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.23 E-value=2.7e+02 Score=31.62 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHhcccCchhhHHHHHHHHHH---HHHHHHHHHHHHH
Q 000699 1138 MLEQYADLEEKHIQLLARHRK----------IQEGIEDVKKAAAKAGVRGAESKFINVLAAEIS---ALKVAREKERQYL 1204 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~----------i~~gi~~vk~aaakag~kg~~~~f~~~laae~s---~lr~ereker~~l 1204 (1345)
|+-..+.+|+.|-.-|.+.-+ ...+...|+....+-|- ....|++.|..++. .++.+-.++|+-+
T Consensus 27 f~keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~--~H~~la~~L~~~v~~l~~~~~~~~~~~K~~ 104 (239)
T cd07647 27 FLKQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVAN--AHIQLAQSLREEAEKLEEFREKQKEERKKT 104 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777766655533 22333444444444222 23456666655443 3333334455555
Q ss_pred HhhhhhhhHhhhchHHHHHhh
Q 000699 1205 RDENKGLQAQLRDTAEAVQAA 1225 (1345)
Q Consensus 1205 ~~en~~l~~qlrdtaeav~aa 1225 (1345)
.+....++..+.++-.+|.-|
T Consensus 105 ~~~~~k~qk~~~~~~~~l~Ka 125 (239)
T cd07647 105 EDIMKRSQKNKKELYKKTMKA 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444433
No 186
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.06 E-value=4.7e+02 Score=36.50 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHHHH
Q 000699 1230 VRLKEAEEAVAAARK 1244 (1345)
Q Consensus 1230 vrl~eaeea~~~a~~ 1244 (1345)
-|++|||+++..|+.
T Consensus 234 kR~~~se~~~~~~~~ 248 (1109)
T PRK10929 234 QRQREAERALESTEL 248 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366666666666554
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=62.82 E-value=4.3 Score=49.84 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=32.3
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHH--hcC--CcccEeecCCCCCCcceeecC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENC--LSG--FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsv--LeG--yNaTIfAYGQTGSGKTYTM~G 185 (1345)
+..|+||...... ++...|.. +..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 3579999877533 44444543 22333322 123 343 67899999999999865
No 188
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.59 E-value=3.8 Score=49.65 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=35.2
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHH-HHhc--C--CcccEeecCCCCCCcceee
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVE-NCLS--G--FNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVd-svLe--G--yNaTIfAYGQTGSGKTYTM 183 (1345)
..++|+.|.+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3577888877665555566666556553 2343 2 2456899999999999976
No 189
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=62.59 E-value=3.8e+02 Score=33.23 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HH---HHHHhhHHHHHHHHHH
Q 000699 1136 ARMLEQYADLEEKHIQLLA----RH---RKIQEGIEDVKKAAAK 1172 (1345)
Q Consensus 1136 ar~~e~y~~l~ek~~~l~~----~h---r~i~~gi~~vk~aaak 1172 (1345)
..+..++.+|+.+..+|.. .| ..+..-|+.+++.-.+
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 3556667777766666654 34 3334455566555444
No 190
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.45 E-value=5.7e+02 Score=35.18 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1244 KRAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1244 ~~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
..+..+++|...+.+.|++|-+||+
T Consensus 913 ~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 913 HEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 3456677888888888888888885
No 191
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=61.82 E-value=4.6 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.0
Q ss_pred hcCCcccEeecCCCCCCcceeec
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
+....+.++-+|++|+|||+++.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445678889999999998873
No 192
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.44 E-value=61 Score=30.87 Aligned_cols=34 Identities=29% Similarity=0.251 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAA 1171 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaa 1171 (1345)
++|..-.|+.||..++..=...+.-|++.|....
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999888877777777776543
No 193
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=61.32 E-value=2.9e+02 Score=31.37 Aligned_cols=144 Identities=26% Similarity=0.301 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1087 SGWISLAEELRNELEASRSLAEKQK---QELEAEKKC-VEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEG 1162 (1345)
Q Consensus 1087 S~wIslteeLR~eLe~~r~~aek~~---~el~~ek~c-~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~g 1162 (1345)
..|..--++|......-+...+..+ .++-.|+.= .+..+.-++......--..+|-.-++.-|.||..|+-+..+-
T Consensus 26 ~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 26 QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666655554444443322 233333222 333445577777777777888888888899999999888888
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHH
Q 000699 1163 IEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAA 1242 (1345)
Q Consensus 1163 i~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a 1242 (1345)
|...|+ .+ .. |+ ..+-+.+.||+.-++--..-
T Consensus 106 i~~~k~---------NE-----------------------------E~----Lk------k~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 106 IEGYKK---------NE-----------------------------ET----LK------KCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHH---------hH-----------------------------HH----HH------HHHHHHHHHHHHHHHHHHHH
Confidence 888776 11 11 11 23445666676665444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 000699 1243 RKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAES 1281 (1345)
Q Consensus 1243 ~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes 1281 (1345)
+.. |++..++|..+|+.++++|..|+..|+-.|.-.
T Consensus 138 K~h---AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 138 KAH---AEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333 457788999999999999999999998877433
No 194
>PHA03155 hypothetical protein; Provisional
Probab=60.96 E-value=18 Score=37.11 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1184 NVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQL 1263 (1345)
Q Consensus 1184 ~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~kl 1263 (1345)
.-|||||.-|+. |||.|+.||+-.+ +-++ +-++.+|+.++.+.-=+.=..+-.+|+
T Consensus 11 EeLaaeL~kL~~-----------ENK~LKkkl~~~~----~p~d---------~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 11 EELEKELQKLKI-----------ENKALKKKLLQHG----NPED---------ELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHccC----CCCc---------cccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888887 8999999998765 2333 335666666665544433333333333
Q ss_pred hh
Q 000699 1264 KK 1265 (1345)
Q Consensus 1264 k~ 1265 (1345)
..
T Consensus 67 e~ 68 (115)
T PHA03155 67 RE 68 (115)
T ss_pred HH
Confidence 33
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.93 E-value=3.5e+02 Score=32.22 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000699 1094 EELRNELEASRSLAEKQKQELEAE-------KKCVEELHEAMQMAMEGNARMLEQYADLEEKHI 1150 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~e-------k~c~eel~~al~~a~~ghar~~e~y~~l~ek~~ 1150 (1345)
.||+.-+..+|...+..+.|...+ -.. .++.++..|.--=+.|-.||.|+-|..
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~---a~~d~r~~m~~q~~~vK~~aRl~aK~~ 138 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYT---ADPDMRLLMDNQFQLVKTYARLEAKKM 138 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777888877777776543 211 133455556666666666666665543
No 196
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=60.82 E-value=23 Score=42.58 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhh----
Q 000699 1151 QLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAG---- 1226 (1345)
Q Consensus 1151 ~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aag---- 1226 (1345)
+--+-|+.||.|+.+.|.| .-|.|-|-.-+++-| +|+-+-|. |-|||-
T Consensus 108 qK~a~H~~vm~G~KE~ke~--ED~FrKAQKPWaK~l-~evE~ak~-------------------------~yh~ack~Ek 159 (472)
T KOG2856|consen 108 QKEAYHKQVMGGFKETKEA--EDGFRKAQKPWAKLL-KEVEAAKK-------------------------AYHAACKEEK 159 (472)
T ss_pred HhhhhHHHHhcchhhhHHH--HHHHHhhcchHHHHH-HHHHHHHH-------------------------HHHHHHHHHH
Confidence 3456799999999998864 334333332333332 22222222 334432
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 000699 1227 ELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEI 1277 (1345)
Q Consensus 1227 ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1277 (1345)
--|+|++.|..-.++..+.+..++...+|.|+++.|.|-||++-|..|++|
T Consensus 160 sA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~y 210 (472)
T KOG2856|consen 160 SALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKY 210 (472)
T ss_pred HHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 247888888888899999999999999999999999999999887777654
No 197
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=60.73 E-value=3.6 Score=43.65 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=13.5
Q ss_pred cEeecCCCCCCcceeecC
Q 000699 168 SVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G 185 (1345)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456789999999999854
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.39 E-value=4.3 Score=43.72 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.2
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999999866
No 199
>PF13166 AAA_13: AAA domain
Probab=60.34 E-value=4.9e+02 Score=33.75 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=43.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhcCCCcccC
Q 000699 1229 LVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH---EMEVSTLNEIIAESRLPKETI 1288 (1345)
Q Consensus 1229 lvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh---~~e~~t~~~~laes~lp~~~~ 1288 (1345)
.-++++.+.+...+++....++.+..++.++|..|+++. +.=+..+|++|..--...-.|
T Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~l 478 (712)
T PF13166_consen 416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFSNFSL 478 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEE
Confidence 445667777888888888888888888888888888764 444667778776654333333
No 200
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.28 E-value=97 Score=39.37 Aligned_cols=145 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 000699 1135 NARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQ-- 1212 (1345)
Q Consensus 1135 har~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~-- 1212 (1345)
|-+||+.|+.+.+...++-.-.++..+--.+.++...+....-..-.|+..--.||.++.- ++-|-+.|..|.+.|.
T Consensus 146 ~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l-~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 146 QRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL-QPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc-CCCcHHHHHHHHHHHhCH
Q ss_pred HhhhchHHHHHhh--hh-------hhhhhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------------
Q 000699 1213 AQLRDTAEAVQAA--GE-------LLVRLKEAEEAVAA--------ARKRAMEAEQETVTAYKQIDQ------------- 1262 (1345)
Q Consensus 1213 ~qlrdtaeav~aa--ge-------llvrl~eaeea~~~--------a~~~~~~~~qe~~k~~~q~~k------------- 1262 (1345)
..|++....+..+ |+ ++-+|..|..++.. ..++...+..+.+.+..++..
T Consensus 225 e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ 304 (563)
T TIGR00634 225 EKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLN 304 (563)
T ss_pred HHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q ss_pred -----------HhhhhhhhHHHHHHHHhh
Q 000699 1263 -----------LKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1263 -----------lk~kh~~e~~t~~~~lae 1280 (1345)
|||||...+..+.+|+.+
T Consensus 305 ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 305 EIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
No 201
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.25 E-value=3.5 Score=40.16 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=13.3
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999976
No 202
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.18 E-value=3.9 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=17.1
Q ss_pred cCC-cccEeecCCCCCCcceeecC
Q 000699 163 SGF-NSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 163 eGy-NaTIfAYGQTGSGKTYTM~G 185 (1345)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 443 34666699999999998743
No 203
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=60.09 E-value=18 Score=40.52 Aligned_cols=70 Identities=36% Similarity=0.333 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHH
Q 000699 1144 DLEEKHIQLLARHRKIQEGIEDVKKAAAKAGV---RGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAE 1220 (1345)
Q Consensus 1144 ~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~---kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtae 1220 (1345)
+|-.-|+==|||-+++|.-=+|||.-+|.|-+ ||++ .||.-| ++|+= .--++||+---|--|-|+
T Consensus 103 ~~~k~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~E-iFI~EL-----TmRAW------~~ae~NkRRtLQksDia~ 170 (286)
T COG5208 103 ILLKDHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITE-IFIEEL-----TMRAW------INAEENKRRTLQKSDIAA 170 (286)
T ss_pred HHHHhccCcHHHHHHHHhcccchhheecccchHHHHHHH-HHHHHH-----HHHHH------HHHhHhhhhHHHHHHHHH
Confidence 34445666689999999999999999998875 5554 566544 34441 123568888888899999
Q ss_pred HHHhh
Q 000699 1221 AVQAA 1225 (1345)
Q Consensus 1221 av~aa 1225 (1345)
||+-.
T Consensus 171 Av~kS 175 (286)
T COG5208 171 AVKKS 175 (286)
T ss_pred HHHHH
Confidence 99864
No 204
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.73 E-value=5.4 Score=46.32 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHhhch-hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 150 FQLVGV-PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 150 Fe~vv~-PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
|++... +++.++.--.-+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 444433 56777766677889999999999999984
No 205
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=59.61 E-value=2.9e+02 Score=30.89 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1095 ELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHR 1157 (1345)
Q Consensus 1095 eLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr 1157 (1345)
+|+.+|...+...+.+..|.. +|+.-=.-|..-|..|-+-+...-+|+++|.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk-----------~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENK-----------TLKQLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 566666666555555555543 5555555677788888888888888888885
No 206
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.14 E-value=1.9e+02 Score=29.89 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd 1217 (1345)
.+.+|-.||.++..+...+..+...+.+.+.+ .+|-.. |-|
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~-----------------------------------~~EL~~----L~~ 52 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKA-----------------------------------LEELEK----LPD 52 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHc----CCC
Confidence 46677788888877777777666666655543 222322 336
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000699 1218 TAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1218 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1280 (1345)
-+.--...|-+||+- .-++|..--++|..-.+-+...+.++.+.|+++++.-=..|.+.|+.
T Consensus 53 d~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 53 DTPIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred cchhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778899999997 77888888899999999999999999999999999888888888754
No 207
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=59.03 E-value=2.7 Score=50.47 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=31.2
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHH-Hhc--C--CcccEeecCCCCCCcceee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVEN-CLS--G--FNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVds-vLe--G--yNaTIfAYGQTGSGKTYTM 183 (1345)
.++||.|.+-+..-+++.+.+..|+... .+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 4566666655444455555555554432 232 2 2346899999999999875
No 208
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=58.97 E-value=4.7 Score=47.54 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=19.7
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++..++.+. ..|+-.|.||||||++|-
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4455566553 556667999999997763
No 209
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.96 E-value=5.5 Score=40.45 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHhcCCcccEeecCCCCCCcceeecC
Q 000699 159 ENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 159 dsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..++.+. ..++..|+||||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444432 4567779999999998865
No 210
>PRK09039 hypothetical protein; Validated
Probab=58.84 E-value=3.1e+02 Score=33.03 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=40.8
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000699 1075 FEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1075 le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~ 1154 (1345)
|.-|+.+-..++..+-.|...|+ .+++.|...+..-.++ . +.. ..++.....|. +.++++...|.+...
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~-~a~~~r~~Le~~~~~~-----~-~~~-~~~~~~~~~l~---~~L~~~k~~~se~~~ 137 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLS-AAEAERSRLQALLAEL-----A-GAG-AAAEGRAGELA---QELDSEKQVSARALA 137 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-----h-hhc-chHHHHHHHHH---HHHHHHHHHHHHhhH
Confidence 56667777777777766655555 3444444333322211 1 101 12222222222 556666666665555
Q ss_pred HHHHHHhhHHHHHHH
Q 000699 1155 RHRKIQEGIEDVKKA 1169 (1345)
Q Consensus 1155 ~hr~i~~gi~~vk~a 1169 (1345)
.=.+.+.=|+-+|+.
T Consensus 138 ~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 138 QVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 211
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=58.13 E-value=3.6 Score=47.88 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++..++.+ ...|+-.|.||||||++|-
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567888999999999873
No 212
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=57.79 E-value=4.8e+02 Score=32.85 Aligned_cols=158 Identities=28% Similarity=0.352 Sum_probs=106.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1084 EVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQ---MAMEGNARMLEQYADLEEKHIQLLARHRKIQ 1160 (1345)
Q Consensus 1084 e~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~---~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~ 1160 (1345)
+.|+.- ++.+.++++|+.-+.-+|.+.-- |.-||+ |-++-.|-+=|-|.+|-+||....+- |-
T Consensus 303 dle~~r-~~aek~~~EL~~Ek~c~eEL~~a----------l~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~eg---I~ 368 (488)
T PF06548_consen 303 DLESSR-SLAEKLEMELDSEKKCTEELDDA----------LQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEG---IE 368 (488)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 355543 69999999999999888876543 555775 77889999999999999999987653 33
Q ss_pred hhHHHHHHHHHH-hcccCch--hhHHHHHHHHH----HHHHHHHHHHHHHHHhhhhh------hhHhhhchHHHHHhhhh
Q 000699 1161 EGIEDVKKAAAK-AGVRGAE--SKFINVLAAEI----SALKVAREKERQYLRDENKG------LQAQLRDTAEAVQAAGE 1227 (1345)
Q Consensus 1161 ~gi~~vk~aaak-ag~kg~~--~~f~~~laae~----s~lr~ereker~~l~~en~~------l~~qlrdtaeav~aage 1227 (1345)
+-=.-.=||..| ||.|=+- ++=+-+|-+|= --||-|-..=+-+|||--.. |=..||+.-||+..
T Consensus 369 dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~--- 445 (488)
T PF06548_consen 369 DVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASV--- 445 (488)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH---
Confidence 322333344444 4444421 12345566643 33444444444555554433 56789999998876
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh
Q 000699 1228 LLVRLKEAEEAVAAARKRAMEAEQETVTAYK----QIDQLKK 1265 (1345)
Q Consensus 1228 llvrl~eaeea~~~a~~~~~~~~qe~~k~~~----q~~klk~ 1265 (1345)
|++.+..|+.-...+-++.+|||+ +|.-||.
T Consensus 446 -------a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 446 -------AQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888889999999998 4555554
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.56 E-value=3.5 Score=45.21 Aligned_cols=17 Identities=41% Similarity=0.468 Sum_probs=14.7
Q ss_pred cEeecCCCCCCcceeec
Q 000699 168 SVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~ 184 (1345)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999984
No 214
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=57.42 E-value=4.3 Score=43.16 Aligned_cols=28 Identities=39% Similarity=0.472 Sum_probs=20.3
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
|.+.+-.|.+..++-||+.|+|||+.|.
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 3333445668899999999999999874
No 215
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=57.40 E-value=5.1 Score=47.72 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 143 EATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 143 ~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
+..|..+|+.+...+. ......+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3568999999865433 244456799999999999987
No 216
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=57.35 E-value=2.8e+02 Score=36.67 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHH--HhhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHhcccCch
Q 000699 1119 KCVEELHEAMQMA--MEGNARML--------------EQYADLEEKHIQLLARHRKIQEG---IEDVKKAAAKAGVRGAE 1179 (1345)
Q Consensus 1119 ~c~eel~~al~~a--~~ghar~~--------------e~y~~l~ek~~~l~~~hr~i~~g---i~~vk~aaakag~kg~~ 1179 (1345)
.|.|+|+.|-+-+ |.-|.+-| |||--|++.|.+-..+.+..+.- +.||=..-+
T Consensus 897 E~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~-------- 968 (1480)
T COG3096 897 EIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRA-------- 968 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 5889999887654 56676654 78999999999888777766543 334332211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1180 SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQ 1259 (1345)
Q Consensus 1180 ~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q 1259 (1345)
-|+-+= +..+-.||-.|-.|||- ||-.||.--+.+.+.....++....-.+-
T Consensus 969 -HF~Y~d--------------s~~~l~e~sdLnekLr~-------------rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqv 1020 (1480)
T COG3096 969 -HFSYSD--------------SAEMLSENSDLNEKLRQ-------------RLEQAEAERTRAREQLRQHQAQLSQYNQV 1020 (1480)
T ss_pred -ccccch--------------hhhhhcccchhhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232222 22344578888888874 44455555566666666666666666677
Q ss_pred HHHHhhhhhhhHHHHHHHHhh
Q 000699 1260 IDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1260 ~~klk~kh~~e~~t~~~~lae 1280 (1345)
+-.||..|+..+.++++++-|
T Consensus 1021 l~~LksS~~~K~~~l~El~qE 1041 (1480)
T COG3096 1021 LASLKSSYDTKKELLNELQQE 1041 (1480)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 888999999999999988754
No 217
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=57.15 E-value=18 Score=41.17 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=31.1
Q ss_pred ecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEEEEeeeccCCCCCceeeEEEEEEEeCCCCcc
Q 000699 273 VCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSER 341 (1345)
Q Consensus 273 V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER 341 (1345)
+.+++++...+...... ..+. ...-|.-++.+.|.... . -.|+||||+|-.+
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~-----~------~~ltLIDlPGl~~ 137 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH-----V------LNLTLIDLPGITK 137 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC-----C------CceEEEeCCCccc
Confidence 46788888888765432 1111 12335556777774321 1 2489999999964
No 218
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.41 E-value=4.3e+02 Score=33.04 Aligned_cols=121 Identities=24% Similarity=0.331 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH----H--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1090 ISLAEELRNELEASRSLAEKQKQELEAEK-KCVEELHEAMQM----A--MEGNARMLEQYADLEEKHIQLLARHRKIQEG 1162 (1345)
Q Consensus 1090 IslteeLR~eLe~~r~~aek~~~el~~ek-~c~eel~~al~~----a--~~ghar~~e~y~~l~ek~~~l~~~hr~i~~g 1162 (1345)
..-...||-||-.-|++-.-...+...-- .|-+.+. +++- + -.|.++|-.-...|.+....|+.|=.-.++-
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~-~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIK-KVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888877655554443322 1222222 2222 1 3678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000699 1163 IEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQ 1212 (1345)
Q Consensus 1163 i~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~ 1212 (1345)
|++++|-++.-|+|= .-+..++++-||+.++.+=++=..|+..+--.++
T Consensus 229 VE~LRkDV~~RgvRp-~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk 277 (424)
T PF03915_consen 229 VEDLRKDVVQRGVRP-SPKQLETVAKDISRASKELKKMKEYIKTEKPIWK 277 (424)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999998 4689999999999998866665555555544443
No 219
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=56.00 E-value=6.3 Score=45.27 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=26.4
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHHHh-cCCcccEeecCCCCCCcceeecC
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVENCL-SGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVdsvL-eGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
-+||.+.+ |.++.+.+ ..++ .|....++-||++|+|||+++..
T Consensus 12 ~~~~~~~g----~~~~~~~L-----~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERL-----SRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHH-----HHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 34666654 44443332 2222 34434588899999999998844
No 220
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=55.97 E-value=4.6 Score=45.17 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.6
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667788889999999999964
No 221
>PF13479 AAA_24: AAA domain
Probab=55.96 E-value=4.4 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred cccEeecCCCCCCcceeecCCCC
Q 000699 166 NSSVFAYGQTGSGKTYTMWGPAN 188 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G~~~ 188 (1345)
+..++.||++|+|||++...-+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~~k 25 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASLPK 25 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhCCC
Confidence 34688999999999998876543
No 222
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=55.90 E-value=3.6e+02 Score=35.64 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=62.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh----hhHHHHHHHhh--c----cCC
Q 000699 887 SKLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQ----TREDKILRLES--L----MDG 956 (1345)
Q Consensus 887 ~~~~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~----~re~ki~rles--l----~dg 956 (1345)
.|+.++.|-+-+.-|+.=|-..+++-...-.||+++-++|-+.++.|= ...|.. +-=+.|..+.. . .-=
T Consensus 107 vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~-~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~ 185 (683)
T PF08580_consen 107 VKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRH-SSPVRHGLPIFELETIVEEMPSSTNSSNKRF 185 (683)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCcccCCCcccHHHHHHhccccCCCCcCCc
Confidence 445667777777889988888899999999999999999977766554 333311 11123333321 0 011
Q ss_pred CC----CchhhhhHHHHhhHHHHHHHHHhhhcCc
Q 000699 957 VL----PTEEFMDEEFASLMHEHKLLKEKYENHP 986 (1345)
Q Consensus 957 ~l----~~~~~~~ee~~~l~~e~k~l~~~~~~~p 986 (1345)
.+ +.||-+.+++.+|..-.+=|+.-++.-|
T Consensus 186 ~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP 219 (683)
T PF08580_consen 186 SLPTFSPQDESLYSSLLALFARMQPLRASLDFLP 219 (683)
T ss_pred CCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 12 3477777778888766666666664433
No 223
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.84 E-value=7e+02 Score=34.09 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1200 ERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEA----EEAVAAARKRAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1200 er~~l~~en~~l~~qlrdtaeav~aagellvrl~ea----eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
|..+|..+|.+|+ | -|||||.- -+--.-+++-+....+|++.|+.+-|+|+++-+
T Consensus 369 qfkqlEqqN~rLK----d----------alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 369 QFKQLEQQNARLK----D----------ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHHHHHHHHHHH----H----------HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566666777665 3 37888852 223344555566666778888888888887754
No 224
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=54.96 E-value=2.8 Score=49.58 Aligned_cols=52 Identities=23% Similarity=0.479 Sum_probs=30.4
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHH-Hhc--CC--cccEeecCCCCCCcceeec
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVEN-CLS--GF--NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVds-vLe--Gy--NaTIfAYGQTGSGKTYTM~ 184 (1345)
.++||.|.+-+.--+.+.+.+..|+... .+. |. ...|+-||++|+|||+++-
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4566666665444444444444443322 121 22 3358999999999998773
No 225
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.91 E-value=7.1 Score=48.03 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=28.2
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHH-Hhc--CC--cccEeecCCCCCCcceee
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVEN-CLS--GF--NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVds-vLe--Gy--NaTIfAYGQTGSGKTYTM 183 (1345)
-+|+.|.+-+..-+.+.+.+..|+... ++. |. ...|+-||++|+|||++.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 345555444433344555554454432 122 22 224778999999999876
No 226
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=54.82 E-value=11 Score=48.62 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=55.9
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCCh----HHHHHH
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLT----PRVFER 209 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GII----PRal~d 209 (1345)
|....=|.|.-.|..-|.. |++.+-.|.... ..+|.|||||||||..-... ...+-|| -.....
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~-------~~~p~Lvi~~n~~~A~q 69 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ-------VNRPTLVIAHNKTLAAQ 69 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHH-------hCCCEEEEECCHHHHHH
Confidence 5556668888889887775 445555554233 37899999999999752210 0111121 123455
Q ss_pred HHHHHHHHHHhhhcccceeEEEEEEEEEecceee
Q 000699 210 LFSRINEEQIKHADKQLNYQCRCSFLEIYNEQIT 243 (1345)
Q Consensus 210 LFs~I~eeq~k~~~~~~~ysV~VSflEIYNEkV~ 243 (1345)
|++.+... -....+..+|||+..|.-..|
T Consensus 70 l~~el~~f-----~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 70 LYNEFKEF-----FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHHHHHh-----CCCCeEEEEeeecccCCcccc
Confidence 66555332 122347778999999977654
No 227
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.65 E-value=2.6e+02 Score=36.83 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000699 1093 AEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK 1172 (1345)
Q Consensus 1093 teeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaak 1172 (1345)
...+..+|+.-+--.++...+|+....+...|.+=+. .|++++-+-..|...-..+.+.
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~---------- 242 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----------NYADLRRNIKPLEGLESTIKKK---------- 242 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------hhhhHHHhhhhhhhhhhHHHHH----------
Confidence 3455667777777777777777775555555554443 7777777766666555444443
Q ss_pred hcccCchhhHHHHHHHHHHHHHH
Q 000699 1173 AGVRGAESKFINVLAAEISALKV 1195 (1345)
Q Consensus 1173 ag~kg~~~~f~~~laae~s~lr~ 1195 (1345)
++.|-.++..|+.
T Consensus 243 ----------i~~l~~~l~~l~~ 255 (670)
T KOG0239|consen 243 ----------IQALQQELEELKA 255 (670)
T ss_pred ----------HHHHHHHHHHHHH
Confidence 7777777776665
No 228
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=54.63 E-value=4.3 Score=42.04 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=13.0
Q ss_pred hcCCcccEeecCCCCCCcceee
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..|-...++-+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999876
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=53.99 E-value=4.7 Score=39.34 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.7
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999865
No 230
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=53.57 E-value=4.7e+02 Score=31.38 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhh
Q 000699 992 KIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYI 1032 (1345)
Q Consensus 992 ~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~ 1032 (1345)
..|+..+--+|+.-+- -||.|-.||.+.|+.|-.-+
T Consensus 69 ~aENt~L~SkLe~EKq-----~kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 69 KAENTMLNSKLEKEKQ-----NKERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHHHHHHhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3477777777764222 58899999999999997533
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.56 E-value=66 Score=38.19 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=22.3
Q ss_pred hhhhhcCchhHHHHHHHHHHHHHHHHHhh
Q 000699 1004 HYRNFYDLGEKEVLLEEVQDLRSQLQYYI 1032 (1345)
Q Consensus 1004 ~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~ 1032 (1345)
+-++|.+ ||+.|+.+|+.|+.||..+.
T Consensus 220 RLkKl~~--eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 220 RLKKLAD--EKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4467766 99999999999999997643
No 232
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=53.19 E-value=4.2e+02 Score=35.08 Aligned_cols=164 Identities=23% Similarity=0.283 Sum_probs=101.3
Q ss_pred chhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000699 1070 TAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKH 1149 (1345)
Q Consensus 1070 ~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~ 1149 (1345)
+..++||.+-.+= --++|--+|.++++-++++ |-. ++|.-++ - -+-..|--++||-.-
T Consensus 91 d~ndklE~~Lank----------da~lrq~eekn~slqerLe--laE-----~~l~qs~----r-ae~lpeveael~qr~ 148 (916)
T KOG0249|consen 91 DLNDKLENELANK----------DADLRQNEEKNRSLQERLE--LAE-----PKLQQSL----R-AETLPEVEAELAQRN 148 (916)
T ss_pred cchHHHHHHHhCc----------chhhchhHHhhhhhhHHHH--Hhh-----HhhHhHH----h-hhhhhhhHHHHHHHH
Confidence 4566777763321 2367778888888888764 322 2333333 3 445666678888887
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhh
Q 000699 1150 IQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELL 1229 (1345)
Q Consensus 1150 ~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagell 1229 (1345)
..|.+-|-..-.-++-.-|.-. =+.-+++||--+|. .++ -|-.=..-|-||++
T Consensus 149 ~al~~aee~~~~~eer~~kl~~----------~~qe~naeL~rarq-------ree-mneeh~~rlsdtvd--------- 201 (916)
T KOG0249|consen 149 AALTKAEEHSGNIEERTRKLEE----------QLEELNAELQRARQ-------REK-MNEEHNKRLSDTVD--------- 201 (916)
T ss_pred HHHHHHHHhhccHHHHHHHHHH----------HHHHHHHHHHHHHH-------HHH-hhhhhccccccccH---------
Confidence 7777666555554444433221 23345566544433 111 23333445789998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhHHHHHHHHhhcC
Q 000699 1230 VRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQL---KKKHEMEVSTLNEIIAESR 1282 (1345)
Q Consensus 1230 vrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~kl---k~kh~~e~~t~~~~laes~ 1282 (1345)
-||--|-.--.+|.++..-++||.+-+|||++.+ |++|...++.|.+.++.=+
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555556677788888888888888887655 6788889998888776544
No 233
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=52.86 E-value=8.5 Score=46.73 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=52.9
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhc--C--CcccEeecCCCCCCcceee------cCCCC-CccccccCCCC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLS--G--FNSSVFAYGQTGSGKTYTM------WGPAN-ALLEENLSSDQ 199 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe--G--yNaTIfAYGQTGSGKTYTM------~G~~~-~~~~~~~s~~~ 199 (1345)
.+++.|+.+.+...--..+.+.++..++.+++. | .---|.-||+.|+|||+.. +|..- .......-...
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 356888888777666677788888888888874 2 2335778999999999863 12110 00011122334
Q ss_pred CCChHHHHHHHHHHHH
Q 000699 200 QGLTPRVFERLFSRIN 215 (1345)
Q Consensus 200 ~GIIPRal~dLFs~I~ 215 (1345)
.|=--+.++.+|....
T Consensus 189 vGEsEk~IR~~F~~A~ 204 (413)
T PLN00020 189 AGEPGKLIRQRYREAA 204 (413)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4555566777776553
No 234
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=52.62 E-value=7.2 Score=41.86 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=19.8
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
+++..++.. ...++-.|+||||||.+|-
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 455555543 3457778999999999874
No 235
>PRK10869 recombination and repair protein; Provisional
Probab=52.55 E-value=1.6e+02 Score=37.53 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhh
Q 000699 1257 YKQIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1257 ~~q~~klk~kh~~e~~t~~~~lae 1280 (1345)
--.|.+|||||...|..+-.|..+
T Consensus 305 l~~l~~L~rKyg~~~~~~~~~~~~ 328 (553)
T PRK10869 305 LSKQISLARKHHVSPEELPQHHQQ 328 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 346778999999777766666644
No 236
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=52.40 E-value=90 Score=36.59 Aligned_cols=54 Identities=31% Similarity=0.463 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHHH
Q 000699 1098 NELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNA---------------------RMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1098 ~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~gha---------------------r~~e~y~~l~ek~~~l~~ 1154 (1345)
.-|.+.+...|++++|| |+|-.||.-.=+-|..|-+ ..=..|-||+|||+.=++
T Consensus 102 gQl~s~Kkqie~Leqel---kr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeve 176 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQEL---KRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVE 176 (307)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHH
Confidence 46888999999999999 6899999876555554432 233789999999996543
No 237
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=52.18 E-value=4.8 Score=43.38 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=13.8
Q ss_pred cEeecCCCCCCcceeecC
Q 000699 168 SVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G 185 (1345)
-++.+|+||||||++|..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999999854
No 238
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=52.07 E-value=4.1e+02 Score=30.29 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=45.1
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1179 ESKFINV---LAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVT 1255 (1345)
Q Consensus 1179 ~~~f~~~---laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k 1255 (1345)
+..|+.+ +..||+.+..+=|+.|+.++++.+.++..+-| |+.++.-|+.++...-+|.|+
T Consensus 81 h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~-----------------a~~~leKAK~~Y~~~c~e~Ek 143 (234)
T cd07652 81 GLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQD-----------------AEAAAEKAKARYDSLADDLER 143 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3466664 55789999999999999999999987665544 444555566666666666666
Q ss_pred HHHH
Q 000699 1256 AYKQ 1259 (1345)
Q Consensus 1256 ~~~q 1259 (1345)
|+..
T Consensus 144 ar~~ 147 (234)
T cd07652 144 VKTG 147 (234)
T ss_pred Hhcc
Confidence 5543
No 239
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=52.02 E-value=7.8e+02 Score=33.51 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HH-HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Q 000699 1121 VEELHEAMQMAMEGNARMLEQYADLEEKH------IQ-LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISAL 1193 (1345)
Q Consensus 1121 ~eel~~al~~a~~ghar~~e~y~~l~ek~------~~-l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~l 1193 (1345)
-++|+++..--..-|+-+++.|+|.+-+- ++ .-..--..-+-|+.+++++-++-.|- .+.+-=++.|
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~------e~~~~~le~l 499 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT------ESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHH
Confidence 45677777777778888888887765432 11 11111122333444444444433332 2233333444
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhchHHH
Q 000699 1194 KVAREKERQYLRDENKGLQAQLRDTAEA 1221 (1345)
Q Consensus 1194 r~ereker~~l~~en~~l~~qlrdtaea 1221 (1345)
|. |-+.|--|-..||.-|..+|++
T Consensus 500 ~~----El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 500 RQ----ELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HH----HHHHHHHHHHHHHHHhhhHHHH
Confidence 33 3344445556666666666654
No 240
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.92 E-value=1.3e+02 Score=40.32 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=49.5
Q ss_pred HhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHH
Q 000699 1205 RDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHE------MEVSTLNEII 1278 (1345)
Q Consensus 1205 ~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~------~e~~t~~~~l 1278 (1345)
..+-++||.++|||+++|.-- ||+=--+-.-=-|-+..=+|.+-.++|+.||++|.. ++-.|++-.|
T Consensus 274 ~~~~~~Lq~~~~d~~~~vk~L-------re~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll 346 (951)
T KOG2115|consen 274 MTSLHNLQKELRDTMSEVKEL-------RENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLL 346 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 346889999999999987532 222222222233455566777888899999988864 3455667777
Q ss_pred hhcCCCc
Q 000699 1279 AESRLPK 1285 (1345)
Q Consensus 1279 aes~lp~ 1285 (1345)
++.+.++
T Consensus 347 ~~~d~~~ 353 (951)
T KOG2115|consen 347 STQDFVG 353 (951)
T ss_pred hcccHHH
Confidence 7777765
No 241
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=51.81 E-value=1.3e+02 Score=34.12 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHHH
Q 000699 890 VPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFA 969 (1345)
Q Consensus 890 ~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~ 969 (1345)
+..--..+-...-.|....|..+.+...+|..|-..++.++..|+ -||..| +..|-+-..-..+-++.|..
T Consensus 101 i~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~-------erE~~i--~krl~e~~~~l~~~i~~Ek~ 171 (247)
T PF06705_consen 101 IEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNERE-------EREENI--LKRLEEEENRLQEKIEKEKN 171 (247)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHH
Q 000699 970 SLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQ 1029 (1345)
Q Consensus 970 ~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~ 1029 (1345)
.=..-++ +++..-+++.+++.-++.+=+-.+|+||..|++-|.
T Consensus 172 ~Re~~~~-----------------~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 172 TRESKLS-----------------ELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
No 242
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=51.60 E-value=7.3 Score=46.14 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.8
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++..++.+. ..|+-.|.||||||++|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3445555432 357888999999999983
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.88 E-value=10 Score=46.01 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=16.9
Q ss_pred cccEeecCCCCCCcceeecC
Q 000699 166 NSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G 185 (1345)
...|+.+|+||+|||.|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35788999999999999843
No 244
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.00 E-value=8.5 Score=46.57 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=24.1
Q ss_pred ChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 145 SQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.|+.+... ..++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 34555443 2233333345555577779999999998763
No 245
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=49.91 E-value=8.9e+02 Score=33.56 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=7.1
Q ss_pred hHHHHhhHHHHHHHH
Q 000699 965 DEEFASLMHEHKLLK 979 (1345)
Q Consensus 965 ~ee~~~l~~e~k~l~ 979 (1345)
+|+...|..+.+.+.
T Consensus 215 ~e~~~~l~~~~~~l~ 229 (1047)
T PRK10246 215 PEQVQSLTASLQVLT 229 (1047)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555554444333
No 246
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.85 E-value=3.5e+02 Score=30.06 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHH
Q 000699 1143 ADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAV 1222 (1345)
Q Consensus 1143 ~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav 1222 (1345)
..++.++..|-+....+..-|++++.....+ ..|-+- +.-|.+.-.+...|+++++.|+.+|. .-.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~----------~~eR~~~l~~l~~l~~~~~~l~~el~---~~~ 130 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREE----------SEEREELLEELEELKKELKELKKELE---KYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc----------cHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3566677777777777777888887776665 333111 14466667778888889999999887 222
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1223 QAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1223 ~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
..=.+.+-+++++=.-+-.| |..=++..+-=..=+++|+.+.-.++++.+
T Consensus 131 ~~Dp~~i~~~~~~~~~~~~~------anrwTDNI~~l~~~~~~k~~~~~~~i~k~f 180 (188)
T PF03962_consen 131 ENDPEKIEKLKEEIKIAKEA------ANRWTDNIFSLKSYLKKKFGMDEEDIRKEF 180 (188)
T ss_pred hcCHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHhcCCCHHHHHHHc
Confidence 23445555554432222222 222334444445556666766666666443
No 247
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=49.80 E-value=28 Score=42.36 Aligned_cols=58 Identities=31% Similarity=0.348 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHhcccCchhhHHHHHHH
Q 000699 1122 EELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEG--IEDVKKAAAKAGVRGAESKFINVLAA 1188 (1345)
Q Consensus 1122 eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~g--i~~vk~aaakag~kg~~~~f~~~laa 1188 (1345)
.||.||.|+--.-|--|+-.| |.-.+-|..+.+| ..+|=-+|-.||+||| +||+--||
T Consensus 269 keLEeA~~~gkk~~d~~~g~~-------n~a~av~~~~~~~kplsevi~~ak~a~~kga--k~~~p~~a 328 (436)
T PTZ00208 269 RELEDAHERGKKAHDAMLGYA-------NTAYAVNTKVEQEKPLSEVIVAAKEAGKKGA--KIIIPAAA 328 (436)
T ss_pred HHHHHHHHHhhhhHHHHHHHH-------HHHHHHhhhhhcCCCHHHHHHHHHHhcccCc--eeecCCCC
Confidence 478899998777777776554 5677888888887 7899989999999996 78774443
No 248
>PTZ00424 helicase 45; Provisional
Probab=49.49 E-value=7.8 Score=45.75 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=19.5
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.+..+++|.|. +..++||||||.+..
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 45556788874 467899999998754
No 249
>PHA00729 NTP-binding motif containing protein
Probab=49.48 E-value=9.6 Score=43.17 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=22.3
Q ss_pred hhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 155 VPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 155 ~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
+-++..+..|--..|+.+|.+|+||||....
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 3456665544335799999999999997654
No 250
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.38 E-value=58 Score=35.49 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000699 1204 LRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHE 1268 (1345)
Q Consensus 1204 l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1268 (1345)
++++.+.++.|...+.++.+.. .--.....++-+..-++....++.|.+.+|+|.++|-+.|+
T Consensus 130 ~~~~~~~~~kq~~~~~~~~~~~--~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 130 LEEKLEALKKQAESASEAAEKL--LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHhhhhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444445555554444444333 00011122233333444444566666666666666665553
No 251
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=48.52 E-value=5.7 Score=39.04 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=13.5
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999987
No 252
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.34 E-value=1.1e+02 Score=35.70 Aligned_cols=103 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHHHh
Q 000699 891 PKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFAS 970 (1345)
Q Consensus 891 ~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~~ 970 (1345)
.|+|... .+.|. ++.+-..|..|+..|+.+. ..+...+-.+..+.+..-|-++..-.+..
T Consensus 117 vK~vqIa---~L~rq--lq~lk~~qqdEldel~e~~-----~~el~~l~~~~q~k~~~il~~~~~k~~~~---------- 176 (258)
T PF15397_consen 117 VKAVQIA---NLVRQ--LQQLKDSQQDELDELNEMR-----QMELASLSRKIQEKKEEILSSAAEKTQSP---------- 176 (258)
T ss_pred HHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q ss_pred hHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHh
Q 000699 971 LMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYY 1031 (1345)
Q Consensus 971 l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~ 1031 (1345)
..|-|+...+++..++.|+..|+. +-+.|.+||..||..++.+
T Consensus 177 -------------~~~~l~~~~~~N~~m~kei~~~re-----~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 177 -------------MQPALLQRTLENQVMQKEIVQFRE-----EIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
No 253
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.33 E-value=1.2e+02 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHH
Q 000699 1200 ERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAE 1236 (1345)
Q Consensus 1200 er~~l~~en~~l~~qlrdtaeav~aagellvrl~eae 1236 (1345)
|...+++.+..|+..+....+.+...-+-+..+|++=
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777776666666655543
No 254
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.11 E-value=4.8e+02 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1121 VEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQ 1160 (1345)
Q Consensus 1121 ~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~ 1160 (1345)
-.++++.|.-|..+=|.++..-.-|+.+|+++..++.+..
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888889999888999999999888876654
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=47.71 E-value=7.3 Score=38.94 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.3
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999865
No 256
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=47.58 E-value=11 Score=42.94 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=25.0
Q ss_pred CCCChhHHHHhhchhhHHHHhc--CCcccEeecCCCCCCcceeec
Q 000699 142 MEATQLDVFQLVGVPLVENCLS--GFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 142 ~~aSQedVFe~vv~PLVdsvLe--GyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.-..|+++.+.+. .++..... +....++-||++|+|||+...
T Consensus 5 ~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 5 EFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3345666666533 23333222 222347779999999998773
No 257
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=47.51 E-value=11 Score=40.16 Aligned_cols=24 Identities=46% Similarity=0.584 Sum_probs=17.8
Q ss_pred HHHHhcCCcccEeecCCCCCCcceee
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
++.++.|.| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 444555776 677889999999873
No 258
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.03 E-value=3.7e+02 Score=28.31 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhh
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVR 1231 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvr 1231 (1345)
|-.|..+|.+++++.+++- .|+..++.+.|....--|.|-..+....++.|.+
T Consensus 36 l~~R~~~I~~~l~~A~~~~-----------------~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~---------- 88 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNS-----------------SDVSEIEHEIETILKNAREEANKIRQKAIAKAKE---------- 88 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4467888888888877653 3445556666665555555544444333333332
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1232 LKEAEEAVAAARKRAMEAE-QETVTAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1232 l~eaeea~~~a~~~~~~~~-qe~~k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
+|++....|+..+.... +-...+..+..++...-+.+|..+...+
T Consensus 89 --ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 89 --EAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444555544443322 2234455566666666667776665544
No 259
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.89 E-value=7.1 Score=45.02 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.1
Q ss_pred cEeecCCCCCCcceeecC
Q 000699 168 SVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G 185 (1345)
.|+-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999855
No 260
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.85 E-value=9.4 Score=45.28 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=19.6
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++..++.+. ..|+..|.||||||.+|-
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 3445444433 457778999999999883
No 261
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=46.84 E-value=1.4e+02 Score=33.33 Aligned_cols=38 Identities=34% Similarity=0.541 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhhh---cCchhHHHHHHHHHHHHHHHHH
Q 000699 993 IELKRVQDELEHYRNF---YDLGEKEVLLEEVQDLRSQLQY 1030 (1345)
Q Consensus 993 ~E~k~vqeel~~~~~~---~d~~ErE~Ll~EI~~Lr~ql~~ 1030 (1345)
-|+-++.+++.+++.. -++.|||.|..++..+...|+.
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 3666777777776554 3688999999999999999985
No 262
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=46.80 E-value=10 Score=42.25 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=14.8
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+-.+++.|+.||||||.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 456789999999999987643
No 263
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.60 E-value=7.4 Score=46.43 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=19.4
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
++..++. ....|+..|+||||||++|-.
T Consensus 154 ~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 154 FLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 4444443 234577889999999998854
No 264
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.27 E-value=7.9 Score=41.58 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.7
Q ss_pred ccEeecCCCCCCcceee
Q 000699 167 SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM 183 (1345)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999975
No 265
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.26 E-value=2.1e+02 Score=31.10 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=37.6
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEA-EKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLA 1154 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~-ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~ 1154 (1345)
+.|+..-..+|.+.+.+-|.+|.+-..-+...+.++.+.+. +.+| ..+.|-.. |+=|+.++|--+|+.|..
T Consensus 67 ~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~-~~~~~q~~-------rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 67 EREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKL-KNLSDQSS-------RLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhcc-------ccchhHHHHHHHHHHHHH
Confidence 33444444455666666666666666666666666555432 2222 23333322 344444444444444444
Q ss_pred HHHHHH
Q 000699 1155 RHRKIQ 1160 (1345)
Q Consensus 1155 ~hr~i~ 1160 (1345)
||+.+|
T Consensus 139 r~~e~l 144 (158)
T PF09744_consen 139 RERELL 144 (158)
T ss_pred HHHHHH
Confidence 444443
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.23 E-value=6.8 Score=39.39 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=13.5
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999876
No 267
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.12 E-value=8.1 Score=37.48 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=12.9
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999865
No 268
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.08 E-value=5.9e+02 Score=30.42 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=97.0
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1080 TRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKC--VEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHR 1157 (1345)
Q Consensus 1080 ~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c--~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr 1157 (1345)
.+..+-|-++-.+++.+...|..-....+..... ..+.| .++|.+=|+ -+++||. +-|.|.+-+-+|+
T Consensus 96 ~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~--~~k~~~eN~~L~eKlK-------~l~eQye-~rE~~~~~~~k~k 165 (309)
T PF09728_consen 96 RRAREEEEKRKELSEKFQATLKDIQAQMEEQSER--NIKLREENEELREKLK-------SLIEQYE-LREEHFEKLLKQK 165 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHhhHH
Confidence 3455566677777777777776655554432211 12222 233444443 2788986 7788888888999
Q ss_pred HHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHH
Q 000699 1158 KIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEE 1237 (1345)
Q Consensus 1158 ~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaee 1237 (1345)
-...-+.+.|=..+++-......++..--..-| +.-..-..|.++-..|+.||-==+ =...+=+.
T Consensus 166 eLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l-----~~~~~~~~~~~~E~~Lr~QL~~Y~----------~Kf~efq~ 230 (309)
T PF09728_consen 166 ELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILL-----EEAAQVQTLKETEKELREQLNLYS----------EKFEEFQD 230 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 999999988888777665554333221110000 000034456667778888874322 25566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1238 AVAAARKRAMEAEQETVTAYKQIDQL 1263 (1345)
Q Consensus 1238 a~~~a~~~~~~~~qe~~k~~~q~~kl 1263 (1345)
+++-+-+-|.-..+|.+++-|.|-+|
T Consensus 231 tL~kSNe~F~tfk~Emekm~Kk~kkl 256 (309)
T PF09728_consen 231 TLNKSNEVFETFKKEMEKMSKKIKKL 256 (309)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777776654
No 269
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.93 E-value=5.5e+02 Score=34.17 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccC
Q 000699 1140 EQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRG 1177 (1345)
Q Consensus 1140 e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg 1177 (1345)
+....|.|||.+..++|..++.=++.|-+.+ .+....
T Consensus 593 ~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~~~~P~ 629 (717)
T PF10168_consen 593 ESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-NSQLPV 629 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCC
Confidence 5556788899999999999999888888876 344443
No 270
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=45.84 E-value=9.2 Score=45.77 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.++..++.+. +.|+-.|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444555555 67888999999999876
No 271
>PRK13764 ATPase; Provisional
Probab=45.57 E-value=9.7 Score=48.65 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.1
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
....|+..|+||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 345589999999999999844
No 272
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.56 E-value=2.2e+02 Score=32.21 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhhhHhhhc
Q 000699 1197 REKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1197 reker~~l~~en~~l~~qlrd 1217 (1345)
++.+-.-|+.||+.|+.||-.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444477788888777655
No 273
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=45.00 E-value=2.8e+02 Score=31.47 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=74.8
Q ss_pred HHHH-HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000699 1075 FEQE-RTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLL 1153 (1345)
Q Consensus 1075 le~e-r~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~ 1153 (1345)
|.++ -.-|-|-=--..+.-||+|+-.+||..+-|-- -+==+..||| |-+|..||--.++.|+-+-.+|-
T Consensus 136 lIRqvs~scveRGlll~rvRDEIrMt~aAYqtlyeSs---------vAfGmRKALq-ae~ek~~~~~~~k~le~~k~~Le 205 (259)
T KOG4001|consen 136 LIRQVSVSCVERGLLLVRVRDEIRMTFAAYQTLYESS---------VAFGMRKALQ-AENEKTRATTEWKVLEDKKKELE 205 (259)
T ss_pred HHHHcchhHHhcceeEEEehHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HhhhhhHHHHHHHHHhhhHHHHH
Confidence 4444 34454444456678899999999999886532 1222344554 45667788777888777766553
Q ss_pred HHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHhhh
Q 000699 1154 ARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAR-EKERQYLRDENKGLQAQLR 1216 (1345)
Q Consensus 1154 ~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~er-eker~~l~~en~~l~~qlr 1216 (1345)
.-|++.|+-.+-+-++..+-| ++-..| -.|-.||++-|+-|+.||-
T Consensus 206 -------~~ia~~k~K~e~~e~r~~E~r----------~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 206 -------LKIAQLKKKLETDEIRSEEER----------EIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred -------HHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888877777665421 111111 2367899999999999994
No 274
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=44.86 E-value=8.4 Score=44.77 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=15.1
Q ss_pred cccEeecCCCCCCcceee
Q 000699 166 NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM 183 (1345)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346899999999999865
No 275
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.44 E-value=1.5e+02 Score=32.87 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000699 1191 SALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEME 1270 (1345)
Q Consensus 1191 s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e 1270 (1345)
|..+..++..-..|+++...++..+-++-+.+..+ ..-|+..+.-+..-++...++++.++|+++++++++.--..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~----~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA----KKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34455677778888888888888888888777766 22233332223333344445555555555555444433355
Q ss_pred HHHHHHHHh
Q 000699 1271 VSTLNEIIA 1279 (1345)
Q Consensus 1271 ~~t~~~~la 1279 (1345)
|..|++.+.
T Consensus 137 i~~~~~~~~ 145 (188)
T PF03962_consen 137 IEKLKEEIK 145 (188)
T ss_pred HHHHHHHHH
Confidence 667766553
No 276
>PHA03162 hypothetical protein; Provisional
Probab=44.42 E-value=70 Score=33.77 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhch
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDENKGLQAQLRDT 1218 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdt 1218 (1345)
=..-|||||.-|+. |||.|+.|||-.
T Consensus 14 tmEeLaaeL~kLqm-----------ENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQL-----------ENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 34569999998888 899999999764
No 277
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.36 E-value=3.9e+02 Score=32.27 Aligned_cols=149 Identities=29% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------HHHhhhhhhhhhhhhhhhHHHHHHHh--hccCC--CCCch----------hhhhHHH
Q 000699 913 AKQASEIKHLNRL----------VQQYKHERECNSIISQTREDKILRLE--SLMDG--VLPTE----------EFMDEEF 968 (1345)
Q Consensus 913 ~~qaa~I~qLn~L----------v~q~k~~~e~~~~~~~~re~ki~rle--sl~dg--~l~~~----------~~~~ee~ 968 (1345)
.|..++.+-|-.| -+|||.=.|+..-.-+.-..++.-+. ...+| .++.. .=.-|++
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHhh---hcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCC
Q 000699 969 ASLMHEHKLLKEKY---ENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSF 1045 (1345)
Q Consensus 969 ~~l~~e~k~l~~~~---~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~ 1045 (1345)
..|..|.+-|+.++ .--=-+||+++.--|+..+=-.-++|.+ |||.|+..+..++.|...+--.
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~--ere~lV~qLEk~~~q~~qLe~d----------- 148 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPH--EREDLVEQLEKLREQIEQLERD----------- 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccch--HHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred ccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1046 PQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQEL 1114 (1345)
Q Consensus 1046 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el 1114 (1345)
++ -.+...+||-+|-++||--|.++-+||
T Consensus 149 ~q----------------------------------------s~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 149 LQ----------------------------------------SLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 278
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.27 E-value=7.2e+02 Score=30.90 Aligned_cols=59 Identities=27% Similarity=0.378 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1096 LRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQE 1161 (1345)
Q Consensus 1096 LR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~ 1161 (1345)
-|-||++.|.--+-++.|+. +++.-+--|-+--||.-+||-|||-..-.|.+-.+...+
T Consensus 107 ~~~El~~~r~e~~~v~~~~~-------~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 107 ARSELQKARQEREAVRQELA-------AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333 233334557777899999999988887777776665543
No 279
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.24 E-value=1.1e+02 Score=30.81 Aligned_cols=120 Identities=23% Similarity=0.312 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhHhh
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRD--ENKGLQAQL 1215 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~--en~~l~~ql 1215 (1345)
+.++|-.|+++.+.|-+.|..+...|.+++.+-. +|..|....+ +...+.. .+-=..+-+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~-----------------~l~~l~~~~~-~~~~l~~~g~~~~~~~~i 65 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKE-----------------TLETLKKAEE-EKELLVPLGAGLFVKAEV 65 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHhhccCC-CCeEEEecCCceEEEEEE
Confidence 5678888888888888888888888888775421 1111110000 0000000 000001112
Q ss_pred hchHHHHHhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000699 1216 RDTAEAVQAAG-ELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNE 1276 (1345)
Q Consensus 1216 rdtaeav~aag-ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1276 (1345)
.|+-+..---| ...|. +..++|...-++|...++.+.+++.++++++.+++.+=...|.+
T Consensus 66 ~~~~~v~v~iG~~~~ve-~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 66 KDDDKVLVDLGTGVYVE-KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred CCCCEEEEEecCCEEEE-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444444456 77777 67888999999999999999999999999988876654444443
No 280
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=44.08 E-value=12 Score=45.56 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=18.6
Q ss_pred HHHHhcCCcccEeecCCCCCCcceee
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 445667877 778889999999763
No 281
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=44.07 E-value=33 Score=39.23 Aligned_cols=55 Identities=36% Similarity=0.557 Sum_probs=43.8
Q ss_pred hHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 000699 965 DEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQY 1030 (1345)
Q Consensus 965 ~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~ 1030 (1345)
|.++..+....+.|.+++..||.....+.+ ++|.. |. +|-.|.+||..||.+|..
T Consensus 213 d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~--------~~~~~-~~--~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 213 DPEFVELVKKIEALEKRLSSHPLHKCPDFE--------EHYAL-YH--EKAELQEEIKALKRQLSD 267 (268)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSCHCCSSSHH--------HHHHH-HH--HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCcCHH--------HHHHH-HH--HHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999998876555 23333 33 899999999999999863
No 282
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=44.03 E-value=5.2e+02 Score=29.16 Aligned_cols=87 Identities=13% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHhcccCchhhHHHHHH----HHHHHHHHHHHHHHHH
Q 000699 1138 MLEQYADLEEKHIQLLARHRK----------IQEGIEDVKKAAAKAGVRGAESKFINVLA----AEISALKVAREKERQY 1203 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~----------i~~gi~~vk~aaakag~kg~~~~f~~~la----ae~s~lr~ereker~~ 1203 (1345)
|+-.-|.+|+.|-.-|.+.-+ +..+...|+....+-|. ....|++.|. .+|+.+..+-+++|+.
T Consensus 27 f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~--~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~ 104 (236)
T cd07651 27 FYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAK--SHLKFAKQIRQDLEEKLAAFASSYTQKRKK 104 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666555544322 22334444444444222 2356777765 4577788888888888
Q ss_pred HHhhhhhhhHhhhchHHHHHhhh
Q 000699 1204 LRDENKGLQAQLRDTAEAVQAAG 1226 (1345)
Q Consensus 1204 l~~en~~l~~qlrdtaeav~aag 1226 (1345)
+..+...++..+-++-.+|.-|=
T Consensus 105 ~~~~~~k~~k~~~~~~~~l~KaK 127 (236)
T cd07651 105 IQSHMEKLLKKKQDQEKYLEKAR 127 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766655555443
No 283
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.01 E-value=7.3e+02 Score=30.86 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKA--GVRGAESKFINVLAAEISALKVAREKERQYLRDEN 1208 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaaka--g~kg~~~~f~~~laae~s~lr~ereker~~l~~en 1208 (1345)
..+++.+|++++.++-+.-.....-++.+++.-+.. ..-...+.-...|-..|..|+.+...-+..+.+++
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~h 274 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKH 274 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccC
Confidence 456777777777766666555555555555432210 00000011233555666677666666555444433
No 284
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=43.86 E-value=7.5e+02 Score=30.99 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Q 000699 1095 ELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAG 1174 (1345)
Q Consensus 1095 eLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag 1174 (1345)
+.-.+...++.....++..|.. .|..+. +|++=+++.-.+=.+|..|+.|.+ |+..+
T Consensus 295 ~w~~~~~~f~~~i~~lE~~l~~----------~l~~~f-~~~~s~~~~~~ll~~f~~L~~Rp~-I~~~l----------- 351 (579)
T PF08385_consen 295 EWERDFSEFRERIEDLERRLAN----------ILRQAF-DDCSSPEEAFRLLQKFKSLLNRPR-IRKAL----------- 351 (579)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----------HHHHHh-cCcCCHHHHHHHHHHHHhHhcchH-HHHHH-----------
Confidence 4455666666666666655433 444443 677888888888899999995554 33333
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHH
Q 000699 1175 VRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAAR 1243 (1345)
Q Consensus 1175 ~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~ 1243 (1345)
...-.+..+.+..||..++..=+..+..-...+--+-.-+=.+|-+|.-|-.|.-||+.--+.+....
T Consensus 352 -~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 352 -QEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 33446789999999999998665544311112222222333478899999999999988777666554
No 285
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.77 E-value=8.2e+02 Score=32.40 Aligned_cols=148 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHH
Q 000699 922 LNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDE 1001 (1345)
Q Consensus 922 Ln~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqee 1001 (1345)
||.|++.|-.+.- ..=..+++. +-+|+++++..+. .++..++.+
T Consensus 246 lN~la~~Yi~~~l-~~k~~~a~~---------------a~~fL~~qL~~l~--------------------~~L~~aE~~ 289 (726)
T PRK09841 246 LNSIANNYLQQNI-ARQAAQDSQ---------------SLEFLQRQLPEVR--------------------SELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHHHH--------------------HHHHHHHHH
Q ss_pred HHhhhhhc---Cch-hHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHH
Q 000699 1002 LEHYRNFY---DLG-EKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQ 1077 (1345)
Q Consensus 1002 l~~~~~~~---d~~-ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 1077 (1345)
|+.|+.-. |.+ |-+.++.+|.+|+.||.. ....+..
T Consensus 290 l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~----------------------------------------l~~~~~~ 329 (726)
T PRK09841 290 LNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE----------------------------------------LTFREAE 329 (726)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHH
Q ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1078 ERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHR 1157 (1345)
Q Consensus 1078 er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr 1157 (1345)
-+.++++---.++.|-.. +.+-+...++++.++. .+...-....++-.++.-.++.|..||.|..
T Consensus 330 l~~~~~~~hP~v~~l~~~----~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 330 ISQLYKKDHPTYRALLEK----RQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHhcccCchHHHHHHH----HHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000699 1158 KIQ 1160 (1345)
Q Consensus 1158 ~i~ 1160 (1345)
...
T Consensus 395 e~~ 397 (726)
T PRK09841 395 ELS 397 (726)
T ss_pred HHH
No 286
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.59 E-value=28 Score=42.79 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.2
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..+..+++|.|.. ..++||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3456678898754 4569999999765
No 287
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.23 E-value=4.2e+02 Score=29.80 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCch
Q 000699 1120 CVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAE 1179 (1345)
Q Consensus 1120 c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~ 1179 (1345)
.-.|+.++|..|-..-|+.+-...-|+-+|.++-. -|++....|-.|=.+|-+
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~-------~~~~~~~~A~~Al~~G~E 84 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEA-------QVADWQEKAELALSKGRE 84 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCH
Confidence 33444445555554444444444444444443332 233444455555555644
No 288
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.05 E-value=6.1e+02 Score=29.70 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAE 1250 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~ 1250 (1345)
|..-++.+|+.|+.+.+.+|+-....+..|+..|..+--.++-+.- .-++++.++..|++++..|+
T Consensus 93 l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK---~Y~~~~~~~~~ar~K~~~a~ 158 (264)
T cd07654 93 YRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRK---TYFEREQVAHLAREKAADVQ 158 (264)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999999999999998877777654 34688888888888887765
No 289
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.02 E-value=2.5e+02 Score=32.35 Aligned_cols=126 Identities=27% Similarity=0.271 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000699 1092 LAEELRNELEASRSLAEKQKQE-------LEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIE 1164 (1345)
Q Consensus 1092 lteeLR~eLe~~r~~aek~~~e-------l~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~ 1164 (1345)
|.+.++.+|--.=-|.|++++= ++.| ---+||+-||-||=+---+=+-.|-||.|.|-++-.+-.
T Consensus 74 LA~kf~eeLrg~VGhiERmK~PiGHDvEhiD~e-lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~------- 145 (290)
T COG4026 74 LAEKFFEELRGMVGHIERMKIPIGHDVEHIDVE-LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLE------- 145 (290)
T ss_pred HHHHHHHHHHHhhhhhheeccCCCCCccccCHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-------
Confidence 6666777666666666666542 1111 234678888888877776666677777777765533211
Q ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 000699 1165 DVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARK 1244 (1345)
Q Consensus 1165 ~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~ 1244 (1345)
|--+|..-|.+||..|+..+ |+|| -||++-|--.+.-++
T Consensus 146 -------------------------------E~~~EkeeL~~eleele~e~----ee~~------erlk~le~E~s~LeE 184 (290)
T COG4026 146 -------------------------------ELQKEKEELLKELEELEAEY----EEVQ------ERLKRLEVENSRLEE 184 (290)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHH
Confidence 22345566778888887764 3333 366666665666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 000699 1245 RAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1245 ~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
.+....-|-.+|++..+.|--+
T Consensus 185 ~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 185 MLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHhchhHHHHHHHHHHHhccc
Confidence 6666666666777766666555
No 290
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=42.79 E-value=1.1e+02 Score=36.34 Aligned_cols=129 Identities=28% Similarity=0.315 Sum_probs=71.8
Q ss_pred HHHHHHHHH----HHhhHHHHHHHHHHhcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHH
Q 000699 1150 IQLLARHRK----IQEGIEDVKKAAAKAGVRG--AESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQ 1223 (1345)
Q Consensus 1150 ~~l~~~hr~----i~~gi~~vk~aaakag~kg--~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~ 1223 (1345)
.++|+|||+ .|.-|...||+|.|--++- .=.-|+..|.+|++.- -.+|.+-|+.=|.+ |++.
T Consensus 15 e~iLaRHr~E~keLq~ki~~mKk~a~k~~k~~rK~~~~~~~~le~el~qk---H~kEL~~~~~~~~~---------e~~~ 82 (302)
T KOG2606|consen 15 EEILARHRRERKELQAKITSMKKAAPKGNKKKRKELTEDIAKLEKELSQK---HKKELEKLKLINES---------EVTP 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhHHHHH---HHHHHHhhcccCcc---------ccCc
Confidence 789999997 5778999999998855211 2235888888887753 33566666643333 2222
Q ss_pred hhhhhhh--------hhhhHHHHH--HHH-----HHHHHHHHHHHHHHHHHH--HHHhhhhhhhHHHHHHHHhhcCCCcc
Q 000699 1224 AAGELLV--------RLKEAEEAV--AAA-----RKRAMEAEQETVTAYKQI--DQLKKKHEMEVSTLNEIIAESRLPKE 1286 (1345)
Q Consensus 1224 aagellv--------rl~eaeea~--~~a-----~~~~~~~~qe~~k~~~q~--~klk~kh~~e~~t~~~~laes~lp~~ 1286 (1345)
|=+.+-+ =+-+-||+= +-| ++|+....-+++++..+- .++.---.||-..+++.|++..|-..
T Consensus 83 ~e~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~ 162 (302)
T KOG2606|consen 83 KENLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMF 162 (302)
T ss_pred cccchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccc
Confidence 2222111 111112111 111 122222222322222211 23444445788889999999999999
Q ss_pred cCCc
Q 000699 1287 TIRP 1290 (1345)
Q Consensus 1287 ~~~~ 1290 (1345)
.|.|
T Consensus 163 ~Ip~ 166 (302)
T KOG2606|consen 163 DIPA 166 (302)
T ss_pred cCCC
Confidence 8877
No 291
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.63 E-value=1.2e+02 Score=28.27 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1241 AARKRAMEAEQETVTAYKQIDQLK 1264 (1345)
Q Consensus 1241 ~a~~~~~~~~qe~~k~~~q~~klk 1264 (1345)
-|++|...++++.+.|+++|+.|+
T Consensus 36 eaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777777777765
No 292
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=42.60 E-value=5.9e+02 Score=31.50 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHhhHhh----hhhhhHHHHHHHHHHHHHH
Q 000699 1075 FEQERTRWTE----VESGWISLAEELRNELEAS 1103 (1345)
Q Consensus 1075 le~er~~wte----~eS~wIslteeLR~eLe~~ 1103 (1345)
++.=|..|+. |++|-=.|...||++++.-
T Consensus 265 l~siRr~Cd~lP~~m~tKveelar~Lr~~I~~V 297 (442)
T PF06637_consen 265 LESIRRTCDHLPKIMTTKVEELARSLRAGIERV 297 (442)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHH
Confidence 7888888987 8999999999999999754
No 293
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=42.51 E-value=3.7e+02 Score=28.09 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=43.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1177 GAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRL-KEAEEAVAAARKRAMEAEQETVT 1255 (1345)
Q Consensus 1177 g~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl-~eaeea~~~a~~~~~~~~qe~~k 1255 (1345)
|.....+.-|.+.|.. +|-|...|++++.+|..+ ||.|. -| ||+| ++.|+. .....+..+
T Consensus 12 ~~~~~~ve~L~s~lr~----~E~E~~~l~~el~~l~~~-r~~l~-----~E-iv~l~~~~e~~--------~~~~~~~~~ 72 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRR----LEGELASLQEELARLEAE-RDELR-----EE-IVKLMEENEEL--------RALKKEVEE 72 (120)
T ss_pred CchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHH-----HH-HHHHHHHHHHH--------HHHHHHHHH
Confidence 4555678888877754 566888999999998766 44332 23 3333 222222 223344555
Q ss_pred HHHHHHHHhhhhhh
Q 000699 1256 AYKQIDQLKKKHEM 1269 (1345)
Q Consensus 1256 ~~~q~~klk~kh~~ 1269 (1345)
|.++++.|..+|+.
T Consensus 73 L~~el~~l~~ry~t 86 (120)
T PF12325_consen 73 LEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666654
No 294
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.48 E-value=2.9e+02 Score=31.75 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH------
Q 000699 1181 KFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETV------ 1254 (1345)
Q Consensus 1181 ~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~------ 1254 (1345)
.|.+-++.+|+.|..+.+++|+-.+..+..|+..|.-+-.-|+.|= -.-..+...+..|++.+..||....
T Consensus 92 ~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~k---K~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~ 168 (241)
T cd07656 92 IYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAM---KTYHTYHAESKSAERKLKEAEKQEEKQEQSP 168 (241)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4777788899999999999999999999999999998887777653 3333444445556777777776654
Q ss_pred -----------HHHHHHHHHhhhhhhhHHHH
Q 000699 1255 -----------TAYKQIDQLKKKHEMEVSTL 1274 (1345)
Q Consensus 1255 -----------k~~~q~~klk~kh~~e~~t~ 1274 (1345)
++.+.+||.+.+|..-..-|
T Consensus 169 ~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~ 199 (241)
T cd07656 169 EKKLERSRSSKKIEKEVEKRQAKYSEAKLKC 199 (241)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888877655444
No 295
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.38 E-value=1.3e+02 Score=34.09 Aligned_cols=83 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh----------hhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1187 AAEISALKVAREKERQYLRD----------ENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTA 1256 (1345)
Q Consensus 1187 aae~s~lr~ereker~~l~~----------en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~ 1256 (1345)
+.|||-||- +||+ |.-+|+.|||++-..+++-..-+..|+.+=..-+..-+ .-+.|....
T Consensus 9 ~GEIsLLKq-------QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE---~ce~ELqr~ 78 (202)
T PF06818_consen 9 SGEISLLKQ-------QLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELE---VCENELQRK 78 (202)
T ss_pred hhhHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH---HhHHHHHHH
Q ss_pred HHHHHHHhhhhhh---hHHHHHHHHh
Q 000699 1257 YKQIDQLKKKHEM---EVSTLNEIIA 1279 (1345)
Q Consensus 1257 ~~q~~klk~kh~~---e~~t~~~~la 1279 (1345)
+.+++-|+.|... |+.-|++-++
T Consensus 79 ~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 79 KNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred hCHHHHhhhhhhhhHHHHHHHHHHHH
No 296
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.25 E-value=1.2e+03 Score=32.92 Aligned_cols=54 Identities=28% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 000699 1105 SLAEKQKQELEAEKKCVEELHEAMQMAM--EGNAR-MLEQYADLEEKHIQLLARHRK 1158 (1345)
Q Consensus 1105 ~~aek~~~el~~ek~c~eel~~al~~a~--~ghar-~~e~y~~l~ek~~~l~~~hr~ 1158 (1345)
+.|++.+.+-+.+|+-.|++.+||+-|- +|-|. .|++-..-++.--+||++-+.
T Consensus 1549 s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1549 SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3466666677788888889999998874 33332 344444444444555554333
No 297
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.25 E-value=11 Score=42.73 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.6
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
..++-||++|+|||++...
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4578899999999998743
No 298
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=42.21 E-value=9.4 Score=45.78 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=30.7
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
..|.|+.|-+ |+++=.. |+..+.+..-+.|+-+|.+||||||++-+
T Consensus 12 ~~~pf~~ivG----q~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVG----QEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhC----hHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 3788888877 3443333 34444443335688999999999998743
No 299
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=42.14 E-value=12 Score=48.15 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 149 VFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
||...-.-.-.-.-.|.|-||+-.|.+|||||+|+
T Consensus 68 if~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchhhhcccccccccccccceeeccccccccccch
Confidence 44443332222234689999999999999999986
No 300
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=42.12 E-value=5.1e+02 Score=28.79 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=22.7
Q ss_pred hhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1071 AEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQEL 1114 (1345)
Q Consensus 1071 ~~~~le~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el 1114 (1345)
.=-.||.|+.|+.+.+.-= .=||..||..+.--+.|..+|
T Consensus 65 ~l~rLeEEqqR~~~L~qvN----~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVN----ALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999855432 334444444444444444333
No 301
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=42.04 E-value=9.5 Score=41.29 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=14.2
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
-..||..||.|||||+++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp -EEEEEES-TTSTTHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 3468899999999998763
No 302
>PRK10536 hypothetical protein; Provisional
Probab=41.94 E-value=12 Score=43.29 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=28.6
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.|.|..|-+-+..|...... +.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHHH
Confidence 46666666666666554442 222 3488999999999999764
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.71 E-value=9.9 Score=45.96 Aligned_cols=20 Identities=35% Similarity=0.307 Sum_probs=16.8
Q ss_pred cccEeecCCCCCCcceeecC
Q 000699 166 NSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G 185 (1345)
...++-+|+||+|||+|+..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45778899999999999844
No 304
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=41.52 E-value=1.9e+02 Score=33.03 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhh
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAA 1225 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aa 1225 (1345)
|..-++.+|+.|..+.+.+|+....++..|+.+|.-+-..|+-+
T Consensus 88 l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~ 131 (237)
T cd07657 88 LESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKL 131 (237)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678889999999999999999999999999998877766654
No 305
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.50 E-value=5.6e+02 Score=28.82 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000699 1099 ELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIE 1164 (1345)
Q Consensus 1099 eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~ 1164 (1345)
+-..+...++.++.++..=+.-.++|+ ..-.+|=.+|.++.-+-+.|.+|++..+-.+.
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~-------~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQ-------EDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666655333333333 33445667788888888888888887655443
No 306
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=41.00 E-value=14 Score=44.64 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3555677876 888899999999874
No 307
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.90 E-value=1.9e+02 Score=31.40 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000699 1248 EAEQETVTAYKQIDQLKKKHEMEVSTLNEIIA 1279 (1345)
Q Consensus 1248 ~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1279 (1345)
.+..+..+...+|..+..|.+.||..|+--++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666665555554
No 308
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.88 E-value=1.7e+02 Score=37.08 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=62.0
Q ss_pred HHHHHhhhhhhhHhhhchH-HHHHhhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000699 1201 RQYLRDENKGLQAQLRDTA-EAVQAAGE---LLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNE 1276 (1345)
Q Consensus 1201 r~~l~~en~~l~~qlrdta-eav~aage---llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1276 (1345)
+.++.+.-..|-.||...= -||+=+.| |..||..||+.-..-.+....+.+....|..+++-.++.|+..|.+|-+
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566666666666655432 34554444 7789999988877777788888999999999999999999999999998
Q ss_pred HHhh
Q 000699 1277 IIAE 1280 (1345)
Q Consensus 1277 ~lae 1280 (1345)
+||.
T Consensus 495 HLas 498 (518)
T PF10212_consen 495 HLAS 498 (518)
T ss_pred HHHH
Confidence 8864
No 309
>PRK01156 chromosome segregation protein; Provisional
Probab=40.87 E-value=1.1e+03 Score=31.87 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.0
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999998764
No 310
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.63 E-value=76 Score=41.70 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 000699 919 IKHLNRLVQQYK 930 (1345)
Q Consensus 919 I~qLn~Lv~q~k 930 (1345)
|..|-+-++-||
T Consensus 910 ik~Le~dlk~~~ 921 (1102)
T KOG1924|consen 910 IKKLERDLKNFK 921 (1102)
T ss_pred HHHHHHHHHhcC
Confidence 444555555554
No 311
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=40.39 E-value=29 Score=41.40 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=55.3
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhc---CCcc--cEeecCCCCCCcceee------cCCCC-CccccccCCC
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLS---GFNS--SVFAYGQTGSGKTYTM------WGPAN-ALLEENLSSD 198 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLe---GyNa--TIfAYGQTGSGKTYTM------~G~~~-~~~~~~~s~~ 198 (1345)
...|+|++|-+-.---.++-+.+..||+...|- |... -+.-||+.|+|||+-- +|..- -......-..
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 467899998775544455556677788887652 3322 4789999999999742 12110 0111122345
Q ss_pred CCCChHHHHHHHHHHHHH
Q 000699 199 QQGLTPRVFERLFSRINE 216 (1345)
Q Consensus 199 ~~GIIPRal~dLFs~I~e 216 (1345)
..|=-.|.+++.|....+
T Consensus 206 yiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYARE 223 (388)
T ss_pred hcccHHHHHHHHHHHHhh
Confidence 667778999999988754
No 312
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=40.36 E-value=9.9e+02 Score=31.37 Aligned_cols=59 Identities=27% Similarity=0.319 Sum_probs=31.6
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHH
Q 000699 1218 TAEAVQAAGELLVRLKEAEEAVAA---ARKRAMEAEQETVTAYKQIDQLKKK---HEMEVSTLNEII 1278 (1345)
Q Consensus 1218 taeav~aagellvrl~eaeea~~~---a~~~~~~~~qe~~k~~~q~~klk~k---h~~e~~t~~~~l 1278 (1345)
-++-++|.|.+|++ ++-|-+--. -..++. ...+.++.+-||-.|-++ +..+|.+|+.-|
T Consensus 276 ~~~~i~~~~~~L~~-kd~~i~~L~~di~~~~~S-~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 276 KIDDIDALGSVLNQ-KDSEIAQLSNDIERLEAS-LVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred cCCchHHHHHHHhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999 555544221 122222 223445555565555444 444555555544
No 313
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.31 E-value=1.2e+03 Score=32.44 Aligned_cols=140 Identities=26% Similarity=0.295 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHH
Q 000699 1107 AEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVL 1186 (1345)
Q Consensus 1107 aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~l 1186 (1345)
.|+...++.-|-.-..|=-+.+.-++.+-.| -|-+++++|..-...=|++..-++-.+|--+.+ ...|.+.+
T Consensus 321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r---e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~-----~~~~~~~~ 392 (1074)
T KOG0250|consen 321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRR---EVNDLKEEIREIENSIRKLKKEVDRLEKQIADL-----EKQTNNEL 392 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhh
Confidence 3444455554443332222233333444444 356788888888888888888887777776654 23455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1187 AAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1187 aae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
..+ +.|+|.+..+|++|+..|+. ++++||+-.+-+.. .+...+.|....+-.|..|+|+
T Consensus 393 ~~~----~~e~e~k~~~L~~evek~e~--------------~~~~L~~e~~~~~~---~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 393 GSE----LEERENKLEQLKKEVEKLEE--------------QINSLREELNEVKE---KAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred hhh----HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHH
Confidence 544 56788888888888776654 55677766554432 2333444454555555555555
Q ss_pred hhhhHHHHH
Q 000699 1267 HEMEVSTLN 1275 (1345)
Q Consensus 1267 h~~e~~t~~ 1275 (1345)
-..-...|+
T Consensus 452 i~~~~~~l~ 460 (1074)
T KOG0250|consen 452 IENISEELK 460 (1074)
T ss_pred HHHHHHHHH
Confidence 444443433
No 314
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.20 E-value=55 Score=35.99 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=44.1
Q ss_pred hHhhhchHHHHHhhhhhhhhhhhHH-----------HHHHHHHHHHHH-H-------------HHHHHHHHHHHHHHhhh
Q 000699 1212 QAQLRDTAEAVQAAGELLVRLKEAE-----------EAVAAARKRAME-A-------------EQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1212 ~~qlrdtaeav~aagellvrl~eae-----------ea~~~a~~~~~~-~-------------~qe~~k~~~q~~klk~k 1266 (1345)
+.|++-+|+|+|--||=||-|--+- +|+..|++=-+. + -++-|-...-+|||+.+
T Consensus 29 KSqiKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~ 108 (187)
T COG3028 29 KSQIKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNR 108 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhh
Confidence 6899999999999999999876553 344444432222 0 12344455568999999
Q ss_pred hhhhHHHHH
Q 000699 1267 HEMEVSTLN 1275 (1345)
Q Consensus 1267 h~~e~~t~~ 1275 (1345)
|..+..++-
T Consensus 109 ~~q~~a~lH 117 (187)
T COG3028 109 HNQQVALLH 117 (187)
T ss_pred HHHHHHHHH
Confidence 999988764
No 315
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.18 E-value=2.8e+02 Score=31.01 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1180 SKFINVLAAEISALKVA---REKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTA 1256 (1345)
Q Consensus 1180 ~~f~~~laae~s~lr~e---reker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~ 1256 (1345)
..-|++|-.||-.+|.. .+|+..-+..||++|..=|...=+=|.-...-|...----.+...++.|...++++...+
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999863 455667778888888776655444444444444433333344445555555555544444
Q ss_pred HHHHHHHhhhh
Q 000699 1257 YKQIDQLKKKH 1267 (1345)
Q Consensus 1257 ~~q~~klk~kh 1267 (1345)
+.+-+-|.-++
T Consensus 106 k~e~evL~qr~ 116 (201)
T PF13851_consen 106 KWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 316
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.14 E-value=16 Score=44.75 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=22.9
Q ss_pred hHHHHhhchhhHHHHhcC----CcccEeecCCCCCCcceee
Q 000699 147 LDVFQLVGVPLVENCLSG----FNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 147 edVFe~vv~PLVdsvLeG----yNaTIfAYGQTGSGKTYTM 183 (1345)
...|.....-++..+.+- -..-|.-.||||.|||+|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 334444443333333333 1556677899999999998
No 317
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.92 E-value=5.7e+02 Score=28.77 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhh
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVR 1231 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvr 1231 (1345)
|-.|+.+|..+|++.++.-.+ .-.++.+-|++...-|.|-..+..+-|+.|++
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~e-----------------Ae~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~---------- 134 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQE-----------------ADAAVAAYEQELAQARAKAHSIAQAAREAAKA---------- 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 457899999999887765443 34455566666666666666555555555443
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000699 1232 LKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIA 1279 (1345)
Q Consensus 1232 l~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1279 (1345)
++++....+++. +++..+++.++|++.|.+-..+|.++=.-+|
T Consensus 135 --~~e~~~~~a~~e---a~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A 177 (204)
T PRK09174 135 --KAEAERAAIEAS---LEKKLKEAEARIAAIKAKAMADVGSIAEETA 177 (204)
T ss_pred --HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333332 2234456666777777766666655544443
No 318
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=39.92 E-value=8.8 Score=47.51 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=28.6
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHH--Hhc--C--CcccEeecCCCCCCcceeec
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVEN--CLS--G--FNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVds--vLe--G--yNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++||.|.+.+.-.+.+.+. +.. +.+ .+. | ..-.|+-||++|+|||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~~-~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEI-VDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHH-HHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 46788887755443333322 111 111 111 2 23358899999999999873
No 319
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.82 E-value=25 Score=42.66 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=32.9
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHH-Hhc--CCc--ccEeecCCCCCCccee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVEN-CLS--GFN--SSVFAYGQTGSGKTYT 182 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVds-vLe--GyN--aTIfAYGQTGSGKTYT 182 (1345)
.-+|+.|=+-+..-++|.+.+..||.+- +|. |.. -.|+-||+.|+|||-.
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 3455555554444567778877787653 333 443 3589999999999753
No 320
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=39.78 E-value=26 Score=40.06 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=26.2
Q ss_pred cCCCCChhHHHHhhchhhHHHHhc--CCcccEeecCCCCCCccee
Q 000699 140 ADMEATQLDVFQLVGVPLVENCLS--GFNSSVFAYGQTGSGKTYT 182 (1345)
Q Consensus 140 Fd~~aSQedVFe~vv~PLVdsvLe--GyNaTIfAYGQTGSGKTYT 182 (1345)
|++...|+.|-... ..+++.+.. +.-..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34456688888763 456666653 2334688899999999864
No 321
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=39.67 E-value=16 Score=39.96 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=24.3
Q ss_pred hchhhHHHHhcC---CcccEeecCCCCCCcceee
Q 000699 153 VGVPLVENCLSG---FNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 153 vv~PLVdsvLeG---yNaTIfAYGQTGSGKTYTM 183 (1345)
++-+-+|.++.| ....+.-+|++|||||.-+
T Consensus 3 tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 3 TGSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CCchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 345678888875 3567889999999999866
No 322
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.58 E-value=18 Score=40.02 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=24.1
Q ss_pred hchhhHHHHhcCC---cccEeecCCCCCCcceee
Q 000699 153 VGVPLVENCLSGF---NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 153 vv~PLVdsvLeGy---NaTIfAYGQTGSGKTYTM 183 (1345)
++-+-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4556788888643 677888999999998755
No 323
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.48 E-value=14 Score=39.78 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHhcCC---cccEeecCCCCCCcceeec
Q 000699 159 ENCLSGF---NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 159 dsvLeGy---NaTIfAYGQTGSGKTYTM~ 184 (1345)
|.+|.|- ...+.-||++|||||.-..
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4556554 5678999999999997653
No 324
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.40 E-value=16 Score=42.20 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=23.9
Q ss_pred HhhchhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 151 QLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 151 e~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
-..+.||+ ..+.--+..|-.||+|++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 34445665 4455566788899999999998774
No 325
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.33 E-value=15 Score=44.36 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=18.8
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3445678877 566779999999864
No 326
>PRK06547 hypothetical protein; Provisional
Probab=38.41 E-value=19 Score=38.79 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=17.3
Q ss_pred HHHHhcCCcccEeecCCCCCCcceee
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
+..+..+.---|.-+|.+|||||+.-
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34444444445666799999999865
No 327
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.41 E-value=5.5e+02 Score=34.46 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000699 1249 AEQETVTAYKQIDQLKK 1265 (1345)
Q Consensus 1249 ~~qe~~k~~~q~~klk~ 1265 (1345)
..++..++.++++++++
T Consensus 605 ~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 605 KAHELIEARKRLNKANE 621 (782)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 44555556666666554
No 328
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=38.33 E-value=22 Score=37.16 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.2
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
+--.|.||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 445799999999964
No 329
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.20 E-value=71 Score=35.08 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1133 EGNARMLEQYADLEEKHIQLLARHRKIQE 1161 (1345)
Q Consensus 1133 ~ghar~~e~y~~l~ek~~~l~~~hr~i~~ 1161 (1345)
..|+.++.+|.-|-++=.-|-..+....-
T Consensus 17 ~~~~~li~ay~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 17 KAFAELIDAYNRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34666777777777766655555555444
No 330
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=37.86 E-value=12 Score=45.56 Aligned_cols=16 Identities=50% Similarity=0.964 Sum_probs=14.2
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
-|+-||.+||||||++
T Consensus 32 ~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV 47 (438)
T ss_pred eEEEeccCCCchhHHH
Confidence 3589999999999987
No 331
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.79 E-value=17 Score=47.58 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=18.0
Q ss_pred cCCcccEeecCCCCCCcceeecC
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.|.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45455788899999999988743
No 332
>PRK04328 hypothetical protein; Provisional
Probab=37.74 E-value=20 Score=40.52 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.0
Q ss_pred chhhHHHHhcC---CcccEeecCCCCCCcce
Q 000699 154 GVPLVENCLSG---FNSSVFAYGQTGSGKTY 181 (1345)
Q Consensus 154 v~PLVdsvLeG---yNaTIfAYGQTGSGKTY 181 (1345)
+-+-+|.+|.| ...+++-+|.+|+|||.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 44678898876 47888999999999975
No 333
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.56 E-value=1.6e+02 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000699 1240 AAARKRAMEAEQETVTAYKQIDQLKKKH 1267 (1345)
Q Consensus 1240 ~~a~~~~~~~~qe~~k~~~q~~klk~kh 1267 (1345)
..++.....++++|++|++|+.+++.+-
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445557777777777777776664
No 334
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=37.45 E-value=16 Score=47.21 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=19.6
Q ss_pred hhHHHHhc-----CCcccEeecCCCCCCcceeecC
Q 000699 156 PLVENCLS-----GFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 156 PLVdsvLe-----GyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+++.+.. |.+..|+.. +||||||+||..
T Consensus 249 ~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 249 KIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 45555555 344455444 899999999976
No 335
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.37 E-value=2.9e+02 Score=28.06 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhc
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRD 1217 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrd 1217 (1345)
+.++|-.|++....|-+.+..+...|.+++++. .+| ..|++.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~--------------------~~L--------~~l~~~---------- 45 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAI--------------------ETL--------EDLKGA---------- 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH--------Hhcccc----------
Confidence 466788888888888888888888888887652 111 111111
Q ss_pred hHHHHHhhhhhhhhh---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000699 1218 TAEAVQAAGELLVRL---------------------------KEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEME 1270 (1345)
Q Consensus 1218 taeav~aagellvrl---------------------------~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e 1270 (1345)
...+.||-| +..++|...-++|...++...+++.+.+.++++....=
T Consensus 46 ------~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 46 ------EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred ------CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124455544 88999999999999999999999999999999877654
Q ss_pred HHHH
Q 000699 1271 VSTL 1274 (1345)
Q Consensus 1271 ~~t~ 1274 (1345)
...|
T Consensus 120 ~~~l 123 (126)
T TIGR00293 120 EQEA 123 (126)
T ss_pred HHHH
Confidence 4443
No 336
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=37.27 E-value=14 Score=50.36 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 151 QLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 151 e~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
...+..+++.+..|....++. .+||||||+||++
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 337
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=37.26 E-value=18 Score=42.18 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.4
Q ss_pred ccEeecCCCCCCcceeec
Q 000699 167 SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~ 184 (1345)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457889999999999874
No 338
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=37.25 E-value=18 Score=44.22 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=19.6
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|..+++|.| |++-++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3556678877 678889999999874
No 339
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.08 E-value=1.2e+03 Score=31.48 Aligned_cols=107 Identities=27% Similarity=0.288 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhHhhhchH
Q 000699 1144 DLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQ----YLRDENKGLQAQLRDTA 1219 (1345)
Q Consensus 1144 ~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~----~l~~en~~l~~qlrdta 1219 (1345)
-|++|+-+|-.|---|.-+|..+|-+.+ ++. +|+.-.-+||+.|.++ =||-. +|--|-.-|-.||+
T Consensus 448 tLn~k~qqls~kl~Dvr~~~tt~kt~ie--~~~----~q~e~~isei~qlqar-ikE~q~kl~~l~~Ekq~l~~qlk--- 517 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQDVRVDITTQKTEIE--EVT----KQRELMISEIDQLQAR-IKELQEKLQKLAPEKQELNHQLK--- 517 (1118)
T ss_pred HHHHHHHHHhhhhhhheeccchHHHHHH--Hhh----hHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHH---
Confidence 3667777777777777777777776653 333 3566666777777652 22211 11222222223332
Q ss_pred HHHHhh-------hhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000699 1220 EAVQAA-------GELLVRLKEAEEAVAAA-RKRAMEAEQETVTAYKQID 1261 (1345)
Q Consensus 1220 eav~aa-------gellvrl~eaeea~~~a-~~~~~~~~qe~~k~~~q~~ 1261 (1345)
++|+| -++|-+++++.+++..+ ++.+..++-|+++-|.+||
T Consensus 518 -q~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 518 -QKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred -HhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333 24556666665555444 4455556666665555544
No 340
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=36.89 E-value=12 Score=37.21 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=13.9
Q ss_pred EeecCCCCCCcceeecC
Q 000699 169 VFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~G 185 (1345)
++-||++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 46799999999997743
No 341
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.82 E-value=2e+02 Score=30.05 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1185 VLAAEISALKVA---REKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQID 1261 (1345)
Q Consensus 1185 ~laae~s~lr~e---reker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~ 1261 (1345)
.+=.|+.+|+-+ -+++|.-+.+|--.|-...-....++....+|-..|.+-++=-..+=+=+..-.++++.|+.-|.
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334445554433 23455666666665555544444555556666667777666666666666667789999999999
Q ss_pred HHhhhhhhhHHHH
Q 000699 1262 QLKKKHEMEVSTL 1274 (1345)
Q Consensus 1262 klk~kh~~e~~t~ 1274 (1345)
-||.=|+.-|..|
T Consensus 107 DlK~myr~Qi~~l 119 (120)
T PF12325_consen 107 DLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888765
No 342
>PLN03025 replication factor C subunit; Provisional
Probab=36.79 E-value=18 Score=42.08 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.7
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
..++-||+.|+|||++...
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3466799999999999865
No 343
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=36.79 E-value=26 Score=42.30 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=22.3
Q ss_pred hhHHHHhcCCc---ccEeecCCCCCCcceeecC
Q 000699 156 PLVENCLSGFN---SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 156 PLVdsvLeGyN---aTIfAYGQTGSGKTYTM~G 185 (1345)
|.+...|.|.- -|||+ |+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehH
Confidence 77888888764 35665 9999999987743
No 344
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=36.75 E-value=19 Score=40.94 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=16.4
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999877
No 345
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=36.32 E-value=2.7e+02 Score=31.36 Aligned_cols=75 Identities=36% Similarity=0.469 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhh
Q 000699 1134 GNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYL---RDENKG 1210 (1345)
Q Consensus 1134 ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l---~~en~~ 1210 (1345)
-|-||++|-+..+ .+||++..-.++=|+.=+..-.+|. -|++-|-.|-.-|+-.-|-|+.+. .+|++.
T Consensus 96 ~q~Rm~~qL~~aE-------~rhrr~i~eLe~EKrkh~~~~aqgD--D~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K 166 (192)
T PF09727_consen 96 MQRRMLEQLAAAE-------KRHRRTIQELEEEKRKHAEDMAQGD--DFTNLLEKERERLKQQLEQEKAQQKKLEKEHKK 166 (192)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777776655 4677888888888887777666774 699999999999998888887765 457777
Q ss_pred hhHhhhc
Q 000699 1211 LQAQLRD 1217 (1345)
Q Consensus 1211 l~~qlrd 1217 (1345)
+..+|++
T Consensus 167 ~~~~l~e 173 (192)
T PF09727_consen 167 LVSQLEE 173 (192)
T ss_pred HHHHHHH
Confidence 7777664
No 346
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.01 E-value=1.6e+02 Score=33.77 Aligned_cols=64 Identities=30% Similarity=0.441 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhhhhHhhhchHHHHH----hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1198 EKERQYLRDENKGLQAQLRDTAEAVQ----AAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQID 1261 (1345)
Q Consensus 1198 eker~~l~~en~~l~~qlrdtaeav~----aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~ 1261 (1345)
|+++.-|....+-++.+.+-+-+|+. .|=+|--.++.|++++..-+.....+++++.+|..+..
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~ 71 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAE 71 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555544443 34467778889998888888888888888888876443
No 347
>PF13514 AAA_27: AAA domain
Probab=35.96 E-value=1.4e+03 Score=31.84 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=9.9
Q ss_pred cCCCCCCcceee
Q 000699 172 YGQTGSGKTYTM 183 (1345)
Q Consensus 172 YGQTGSGKTYTM 183 (1345)
||+.-+|||++|
T Consensus 2 yGpNEAGKST~l 13 (1111)
T PF13514_consen 2 YGPNEAGKSTLL 13 (1111)
T ss_pred CCCCCCCHHHHH
Confidence 788888888877
No 348
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=35.89 E-value=18 Score=45.61 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred hhHHHHhcCCc--ccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGFN--SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGyN--aTIfAYGQTGSGKTYTM 183 (1345)
..++..+.|.. .-++-+|++|+|||.|+
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 34445554543 45788999999999998
No 349
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.82 E-value=21 Score=43.73 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=25.4
Q ss_pred ChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCccee
Q 000699 145 TQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYT 182 (1345)
Q Consensus 145 SQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYT 182 (1345)
.|+.+... +.||=.-+-.|.-.+.+-||+.|+|||..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35555544 33444444567778889999999999863
No 350
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.65 E-value=7.9e+02 Score=28.84 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhHHHHHH---HHHHHHh--------hhHHHHHHHHHHHHHHHHH
Q 000699 1109 KQKQELEAEKKCVEELHE---AMQMAME--------GNARMLEQYADLEEKHIQL 1152 (1345)
Q Consensus 1109 k~~~el~~ek~c~eel~~---al~~a~~--------ghar~~e~y~~l~ek~~~l 1152 (1345)
..+-+..++++|.+-|.. -|...|. ||-.++.....+...|..-
T Consensus 113 ~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 113 CKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 345677788999887665 2333333 8999998888888888754
No 351
>PF05729 NACHT: NACHT domain
Probab=35.63 E-value=14 Score=37.25 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.5
Q ss_pred cEeecCCCCCCcceeec
Q 000699 168 SVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~ 184 (1345)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999874
No 352
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.12 E-value=1.3e+03 Score=31.31 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=38.0
Q ss_pred CchhhhhHHHHhhHHHHHHHHHh-hhcCccchhhhHHHHHHHHHHHhh-hhhcCchhHHHHHHHHHHHHHHHH
Q 000699 959 PTEEFMDEEFASLMHEHKLLKEK-YENHPEVLGTKIELKRVQDELEHY-RNFYDLGEKEVLLEEVQDLRSQLQ 1029 (1345)
Q Consensus 959 ~~~~~~~ee~~~l~~e~k~l~~~-~~~~pev~~~~~E~k~vqeel~~~-~~~~d~~ErE~Ll~EI~~Lr~ql~ 1029 (1345)
+++.|+|-++..|-.|..-+-.+ +-..||.=...-+-++--|++++- ..|++ ++-.|-.+|+.||.++.
T Consensus 611 ~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~--lI~~lD~~~e~lkQ~~~ 681 (970)
T KOG0946|consen 611 NTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKG--LIRELDYQIENLKQMEK 681 (970)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 67899999999998665444333 445555544444444444444431 22222 55555555665555433
No 353
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=34.95 E-value=19 Score=41.63 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
+++.++.. +--|+-.|++|+|||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444443 5567889999999998773
No 354
>PLN02939 transferase, transferring glycosyl groups
Probab=34.90 E-value=8.7e+02 Score=33.58 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHH----------------------------
Q 000699 1090 ISLAEELRN----ELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNAR---------------------------- 1137 (1345)
Q Consensus 1090 IslteeLR~----eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar---------------------------- 1137 (1345)
|-|-...|+ ||+....--|.++.++..=..--.|-+.-++.|.+|..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (977)
T PLN02939 144 ILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHS 223 (977)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------------hcccCchhhHHHHHH--HHHHHHHHHHHHHHHH
Q 000699 1138 MLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK------------AGVRGAESKFINVLA--AEISALKVAREKERQY 1203 (1345)
Q Consensus 1138 ~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaak------------ag~kg~~~~f~~~la--ae~s~lr~ereker~~ 1203 (1345)
.-+....|.|.-.-|=.--.....-+.+|+.--.+ |.+++-++||+.|=+ .+++.|+.|-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 297 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC------ 297 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH------
Q ss_pred HHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hhh
Q 000699 1204 LRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLK----------------KKH 1267 (1345)
Q Consensus 1204 l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk----------------~kh 1267 (1345)
|-+.-..||.-|--++ +.+|+|+.+ .|.|..|.+++|||+ ..+
T Consensus 298 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (977)
T PLN02939 298 WWEKVENLQDLLDRAT-------------NQVEKAALV--------LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELL 356 (977)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHH--------hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q ss_pred hhhHHHHHHHHhhc
Q 000699 1268 EMEVSTLNEIIAES 1281 (1345)
Q Consensus 1268 ~~e~~t~~~~laes 1281 (1345)
.+.|..++.+|.++
T Consensus 357 ~~~~~~~~~~~~~~ 370 (977)
T PLN02939 357 QQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHHHHHHHHhh
No 355
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=34.66 E-value=25 Score=38.48 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=24.4
Q ss_pred hchhhHHHHhcCC---cccEeecCCCCCCcceeec
Q 000699 153 VGVPLVENCLSGF---NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 153 vv~PLVdsvLeGy---NaTIfAYGQTGSGKTYTM~ 184 (1345)
++-|=+|.+|.|- ...++-||.+|||||....
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3456788888643 4567999999999998764
No 356
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=34.66 E-value=21 Score=38.80 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=24.4
Q ss_pred hchhhHHHHhcC-C--cccEeecCCCCCCcceeec
Q 000699 153 VGVPLVENCLSG-F--NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 153 vv~PLVdsvLeG-y--NaTIfAYGQTGSGKTYTM~ 184 (1345)
++-+-+|.+|.| + ...+.-+|++|+|||..+.
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 345778888864 3 4567889999999998764
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.29 E-value=17 Score=43.37 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=13.6
Q ss_pred ccEeecCCCCCCccee
Q 000699 167 SSVFAYGQTGSGKTYT 182 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYT 182 (1345)
+-|+-.|+||||||+-
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4588899999999974
No 358
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=34.25 E-value=13 Score=48.17 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccC
Q 000699 1144 DLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRG 1177 (1345)
Q Consensus 1144 ~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg 1177 (1345)
.|++.|...-.++.....-|+++.+.....|.+.
T Consensus 499 ~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~ 532 (713)
T PF05622_consen 499 KLEEENREANEKILELQSQLEELQKSLQEQGSKS 532 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555555555566666677777777766655554
No 359
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=34.17 E-value=13 Score=46.65 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhh
Q 000699 1009 YDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESG 1088 (1345)
Q Consensus 1009 ~d~~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~ 1088 (1345)
..-++|+.--+||..||..+|.++ .|++.+-|++.+++ +| =+.+.+|.+.|+.
T Consensus 425 ~~~~~~~~~~~ei~~lr~~iQ~l~-~s~~PLgk~~d~iq---------------------ED-id~M~~El~~W~~---- 477 (539)
T PF10243_consen 425 ASKKERESVEKEIEKLRESIQTLC-RSANPLGKLMDYIQ---------------------ED-IDSMQKELEMWRS---- 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccchhHHHHHHHHHHHHHHHH-HhcchHHHHHHHHH---------------------hH-HHHHHHHHHHHHH----
Confidence 467899999999999999999966 55666666666655 23 3457778777762
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000699 1089 WISLAEELRNELEASRSLAEKQKQELEAEKKCVEE 1123 (1345)
Q Consensus 1089 wIslteeLR~eLe~~r~~aek~~~el~~ek~c~ee 1123 (1345)
-..+...+|..|+..|++
T Consensus 478 -----------------e~~~~~~~l~~e~~~t~~ 495 (539)
T PF10243_consen 478 -----------------EYRQHAEALQEEQSITDE 495 (539)
T ss_dssp -----------------------------------
T ss_pred -----------------HHHHHHHHHHHHHhhhhh
Confidence 233445677788888887
No 360
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.16 E-value=14 Score=45.86 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=18.9
Q ss_pred hcCCcccEeecCCCCCCcceeecCCC
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTMWGPA 187 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM~G~~ 187 (1345)
.+|.+ ++|.+|||||||+...++.
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiPi 132 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIPI 132 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHHH
Confidence 34544 4899999999999998763
No 361
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=34.15 E-value=76 Score=37.31 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=48.4
Q ss_pred hHHHHHHHhhHhhhhhhhHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000699 1072 EEKFEQERTRWTEVESGWISLA-EELRNE-----LEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADL 1145 (1345)
Q Consensus 1072 ~~~le~er~~wte~eS~wIslt-eeLR~e-----Le~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l 1145 (1345)
+-+|||||++-... -|-++ ...++| -+..++.+++-+.+|+.||.=|+-..--+--.---- +-+.--.-
T Consensus 147 gIELEQErQKT~q~---~~e~~n~qiK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKDf--IKe~EQNC 221 (398)
T PF05917_consen 147 GIELEQERQKTEQE---GIETTNNQIKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKDF--IKETEQNC 221 (398)
T ss_pred cchHHHHHHHHHHH---hhhhhHhHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 34588888874431 12121 122222 233344556666788888877765433322221111 22333456
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 000699 1146 EEKHIQLLARHRKIQEGIE 1164 (1345)
Q Consensus 1146 ~ek~~~l~~~hr~i~~gi~ 1164 (1345)
||+|+++.-+.-.|-.||+
T Consensus 222 qEnH~QfFIkK~gik~gIa 240 (398)
T PF05917_consen 222 QENHGQFFIKKGGIKGGIA 240 (398)
T ss_pred HhhcceeeeeecccccceE
Confidence 9999999988888877774
No 362
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=33.89 E-value=4.5e+02 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcc
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGV 1175 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~ 1175 (1345)
|-.|+..|..+|+++.+.-..|..
T Consensus 33 l~~R~~~I~~~l~~a~~~~~~a~~ 56 (156)
T PRK05759 33 LEERQKKIADGLAAAERAKKELEL 56 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999998877666543
No 363
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=33.75 E-value=25 Score=45.59 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 148 DVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 148 dVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.||...-.-...-+-.|.|-||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 355444332222233689999999999999999987
No 364
>PF13166 AAA_13: AAA domain
Probab=33.47 E-value=1.2e+03 Score=30.32 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhhHhhhchHHHHHhhhhhhhhh
Q 000699 1201 RQYLRDENKGLQAQLRDTAEAVQAAGELLVRL 1232 (1345)
Q Consensus 1201 r~~l~~en~~l~~qlrdtaeav~aagellvrl 1232 (1345)
..-++++.+.|+.++.+|..+|..-=+.|.+|
T Consensus 440 ~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 440 IKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33455556667777777777766655555555
No 365
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.43 E-value=1.2e+03 Score=30.52 Aligned_cols=147 Identities=22% Similarity=0.294 Sum_probs=72.2
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1080 TRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELH---EAMQMAMEGNARMLEQYADLEEKHIQLLARH 1156 (1345)
Q Consensus 1080 ~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~---~al~~a~~ghar~~e~y~~l~ek~~~l~~~h 1156 (1345)
..-+||+..++.||.+ -+||.+......-+..||. +||. +|. +.|+..|.+.. +-+..|++...+++..
T Consensus 167 ~QL~Elq~~Fv~ltne-~~elt~~lq~Eq~~~keL~--~kl~-~l~~~l~~~~e~le~K~---qE~~~Lq~q~dq~~~~- 238 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNE-NMELTSALQSEQHVKKELQ--KKLG-ELQEKLHNLKEKLELKS---QEAQSLQEQRDQYLGH- 238 (617)
T ss_pred HHHHHHHHHHHHHHHh-hhHhhHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH-
Confidence 3456777788777755 4455554444444444442 2222 222 23333333331 1344555555554431
Q ss_pred HHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHH
Q 000699 1157 RKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAE 1236 (1345)
Q Consensus 1157 r~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eae 1236 (1345)
++... || --.|+.|-.+|-. + --+|.||-|..-.=.+=|-+-+-. +-
T Consensus 239 --Lqqy~-----a~------------~q~l~~e~e~L~~-----------q-~l~Qtql~d~lq~eE~q~~~~~E~--~~ 285 (617)
T PF15070_consen 239 --LQQYV-----AA------------YQQLASEKEELHK-----------Q-LLQQTQLMDRLQHEESQGKVQLEM--AH 285 (617)
T ss_pred --HHHHH-----HH------------HHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHhhhHHHHHH--HH
Confidence 11110 00 1345555555543 1 124666666665433333211100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000699 1237 EAVAAARKRAMEAEQETVTAYKQIDQLKKKH 1267 (1345)
Q Consensus 1237 ea~~~a~~~~~~~~qe~~k~~~q~~klk~kh 1267 (1345)
.=+..++++...+-|+|+.|+.||..|---+
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~ 316 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLSLMALPG 316 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Confidence 2234458888899999999999987765444
No 366
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=33.34 E-value=24 Score=46.70 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=21.3
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.+..+.+|.|+.|.| +||||||-+-|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH
Confidence 455667999999988 99999997753
No 367
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=33.15 E-value=31 Score=36.15 Aligned_cols=39 Identities=28% Similarity=0.656 Sum_probs=32.1
Q ss_pred hHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhh
Q 000699 943 REDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRN 1007 (1345)
Q Consensus 943 re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~ 1007 (1345)
.|.|+.|||.+...++ ||.+.+..-|-+.||+|++.|-.
T Consensus 13 q~ekm~r~EdfiedVi--------------------------h~di~k~~d~~dKl~eQ~aeY~k 51 (157)
T KOG3047|consen 13 QEEKMKRLEDFIEDVI--------------------------HPDIAKEEDEFDKLQEQCAEYAK 51 (157)
T ss_pred HHHHHHHHHHHHHHhh--------------------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999988877 67777777788899999998754
No 368
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.99 E-value=1.4e+03 Score=30.95 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=42.7
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhHHHHHHHHhhcCCCcc
Q 000699 1222 VQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYK---QIDQLKKKHEMEVSTLNEIIAESRLPKE 1286 (1345)
Q Consensus 1222 v~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~---q~~klk~kh~~e~~t~~~~laes~lp~~ 1286 (1345)
+.+=.++.+|++.-|.-++.-.+....++-|.++|-. .+++=|-.-+.+|..|...|.+...+-.
T Consensus 540 ~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 540 LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 4555677777777777777666677777777777764 4444455556677777777655554443
No 369
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=32.98 E-value=14 Score=48.02 Aligned_cols=51 Identities=20% Similarity=0.492 Sum_probs=28.6
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHH-HHhcCC----cccEeecCCCCCCcceee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVE-NCLSGF----NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVd-svLeGy----NaTIfAYGQTGSGKTYTM 183 (1345)
.++||.|-+....-+.+.+.+..|+-. .++..+ ...|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777765443333444433333221 122222 245899999999999765
No 370
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=32.87 E-value=15 Score=38.30 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.3
Q ss_pred ccEeecCCCCCCcceee
Q 000699 167 SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM 183 (1345)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45667899999999877
No 371
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=32.85 E-value=2e+02 Score=36.24 Aligned_cols=43 Identities=12% Similarity=-0.048 Sum_probs=29.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000699 1127 AMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKA 1169 (1345)
Q Consensus 1127 al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~a 1169 (1345)
.+-+|..||-=.+..-..+..+++.|++.-..+-.+++.+..-
T Consensus 248 ~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~ 290 (460)
T KOG1363|consen 248 VTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLL 290 (460)
T ss_pred hhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHH
Confidence 3334445556666666677778888888888887777777654
No 372
>CHL00176 ftsH cell division protein; Validated
Probab=32.72 E-value=16 Score=47.14 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=15.0
Q ss_pred ccEeecCCCCCCcceee
Q 000699 167 SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM 183 (1345)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999976
No 373
>PRK04195 replication factor C large subunit; Provisional
Probab=32.56 E-value=17 Score=44.92 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=20.3
Q ss_pred hhHHHHhcCC-cccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGF-NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGy-NaTIfAYGQTGSGKTYTM 183 (1345)
..+.....|. ...++-||++|+|||++.
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444444554 456889999999999876
No 374
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=32.52 E-value=23 Score=42.34 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.2
Q ss_pred EeecCCCCCCcceeec
Q 000699 169 VFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~ 184 (1345)
++.+|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999875
No 375
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=32.52 E-value=4.4e+02 Score=29.98 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.7
Q ss_pred hhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 000699 1208 NKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTL 1274 (1345)
Q Consensus 1208 n~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~ 1274 (1345)
|.--+.||+++-.++.+-.+. =+++....++.+++-++|..|.+-|..=+..|
T Consensus 150 N~~Ye~QL~~as~q~~~~~~i--------------~~na~~fkeQ~~kLa~NL~sLN~VYg~ML~AM 202 (202)
T TIGR03513 150 NTIYEAQLKGASSHADANNEI--------------AINSSSLKEEMEKMAANLTSLNEVYGGMLTAM 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 778889999988888776664 34555667888888888888888887655443
No 376
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=32.51 E-value=16 Score=41.18 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.4
Q ss_pred cccEeecCCCCCCcceeecCC
Q 000699 166 NSSVFAYGQTGSGKTYTMWGP 186 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G~ 186 (1345)
...++-||..|+|||++.-+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 356899999999999988553
No 377
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=32.41 E-value=23 Score=44.66 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..+|+.+++.. ..- ..+...++.+....|+-||++|+|||+.-
T Consensus 61 p~~f~~iiGqs----~~i----~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 61 PKSFDEIIGQE----EGI----KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred cCCHHHeeCcH----HHH----HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 45677777654 222 22333345566677888999999998754
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.26 E-value=27 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.0
Q ss_pred ccEeecCCCCCCcceeec
Q 000699 167 SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~ 184 (1345)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999984
No 379
>PHA02244 ATPase-like protein
Probab=32.11 E-value=30 Score=42.13 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHhhchhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 149 VFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 149 VFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.+......+..-+-.|.+ |+-+|+||+|||+...
T Consensus 104 ~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 104 TFHYETADIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 333333333333334554 5568999999998763
No 380
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=32.07 E-value=20 Score=44.50 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=20.9
Q ss_pred ccCCCcceeEEEecCCCCCchHHHHHHHHHHHH
Q 000699 398 SLGGNAKLAMICAISPAQSCKSETFSTLRFAQR 430 (1345)
Q Consensus 398 SLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsR 430 (1345)
.|.-..++.+|||++..... +..|.+|-|
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 35557899999999988764 446666643
No 381
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=32.06 E-value=22 Score=45.77 Aligned_cols=25 Identities=40% Similarity=0.584 Sum_probs=19.4
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455677865 788889999999875
No 382
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=31.87 E-value=8.6e+02 Score=28.18 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=76.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1127 AMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRD 1206 (1345)
Q Consensus 1127 al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~ 1206 (1345)
||=-|+...++.|.--.-|+++|..+|.| -+ +.==.++--.|-.-|+| ..-.++
T Consensus 87 ALIda~teY~kav~tLisL~k~Y~~~lgK--------------------l~--~~EeD~vWqvIIg~R~E----~~dk~~ 140 (234)
T PF09057_consen 87 ALIDAITEYTKAVHTLISLQKRYLSSLGK--------------------LN--SAEEDAVWQVIIGQRVE----MNDKQQ 140 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTT--------------------SS--THHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------cC--ccchhHHHHHHHHHHHH----HHHHHH
Confidence 56666777777777777888888777654 11 11123445555555663 333444
Q ss_pred hhhhhhHhh-------hchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHH
Q 000699 1207 ENKGLQAQL-------RDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH----EMEVSTLN 1275 (1345)
Q Consensus 1207 en~~l~~ql-------rdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh----~~e~~t~~ 1275 (1345)
|-+.|..-. .=.|||-...| ||+|...++.|...|+-..+.+.|..-+..+|. -+||.-|.
T Consensus 141 e~~rlEs~w~sAv~L~e~AAEAAy~sG--------AdqASitar~~iQ~aqsQV~e~r~ls~~AE~kLae~q~eei~r~~ 212 (234)
T PF09057_consen 141 ECLRLESTWMSAVNLSEMAAEAAYQSG--------ADQASITARTRIQVAQSQVEEARQLSQKAEKKLAEAQVEEIQRMA 212 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 23567766666 999999999999999988888877776665554 57888888
Q ss_pred HHHhh
Q 000699 1276 EIIAE 1280 (1345)
Q Consensus 1276 ~~lae 1280 (1345)
+|-++
T Consensus 213 ~~~~~ 217 (234)
T PF09057_consen 213 EYASS 217 (234)
T ss_dssp H---H
T ss_pred Hhhcc
Confidence 86543
No 383
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=31.76 E-value=29 Score=37.78 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=23.1
Q ss_pred chhhHHHHhc-CCc--ccEeecCCCCCCcceeec
Q 000699 154 GVPLVENCLS-GFN--SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 154 v~PLVdsvLe-GyN--aTIfAYGQTGSGKTYTM~ 184 (1345)
+-+=+|.++. |+. ..+..+|.+|||||....
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 3456788886 544 347899999999998763
No 384
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.70 E-value=17 Score=44.52 Aligned_cols=19 Identities=42% Similarity=0.417 Sum_probs=15.6
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
..|+-.|+||+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3667779999999999854
No 385
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.68 E-value=3.1e+02 Score=35.14 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH--hcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhh
Q 000699 1149 HIQLLARHRKIQEGIEDVKKAAAK--AGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAG 1226 (1345)
Q Consensus 1149 ~~~l~~~hr~i~~gi~~vk~aaak--ag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aag 1226 (1345)
|.|+..-|.+|+..|-|++..--- +|.+| ..|-|+|--||.|+|++.+.-+-+.--+..++.|
T Consensus 425 ~~d~~~~~~km~~~i~~~~~~~~sd~~~~re------r~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~--------- 489 (588)
T KOG3612|consen 425 HADPTVVEDKMKDAIIDLQESTLSDYSGSRE------RSLVAATEKLRQEFEELQQTSRRELPVPLRNFEL--------- 489 (588)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhcCCc------cchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH---------
Confidence 556667778888888888876543 44444 3577888888888887665554443333333333
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 000699 1227 ELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLN 1275 (1345)
Q Consensus 1227 ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~ 1275 (1345)
.+|+.|...-+.-.+.++..+.||--+|..++..-|
T Consensus 490 -------------em~~~r~tlE~k~~~n~~e~~kkl~~~~qr~l~etK 525 (588)
T KOG3612|consen 490 -------------EMAEMRKTLEQKHAENIKEEIKKLAEEHQRALAETK 525 (588)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444445555566666666666655443
No 386
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=31.65 E-value=18 Score=36.86 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.6
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 387
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=31.47 E-value=6.7e+02 Score=28.63 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcccCc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH
Q 000699 1163 IEDVKKAAAKAGVRGA----ESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA 1221 (1345)
Q Consensus 1163 i~~vk~aaakag~kg~----~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea 1221 (1345)
..||+-.+-+-|++|- .-.|..-+.+++..+- .|-+.|+++|..|+.+|.-=+.+
T Consensus 8 ~~dI~ek~F~~~~rGy~~eEVdeFLD~V~~dye~~l----~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 8 PKDITEKEFGTGFRGYDEEEVDEFLDDVIDDYEQLL----DENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456656666699992 2359999999988887 46667888888888887654443
No 388
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.43 E-value=23 Score=45.88 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=24.4
Q ss_pred ecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 139 VADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 139 VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
-+.....|..+++.+... + ....++.+|+||||||.+.+
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHHH
Confidence 334445566555554321 1 23458899999999997764
No 389
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=31.36 E-value=3.1e+02 Score=24.84 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=59.1
Q ss_pred HHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1202 QYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1202 ~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
++|.+|+..|+.=.+-..|..+-|-+.|.-|+.--+...-+..+...+....-...+-|.++.|+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 35778899999999999999999999999999999999999999999999999999999888775
No 390
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.27 E-value=63 Score=39.26 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=35.0
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHH---HHHHHHH
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFE---RLFSRIN 215 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~---dLFs~I~ 215 (1345)
.+|..+|+|.+| +....||||||..+-++.-. .++.+-.|++-.++. +|==+|.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~----rLsedP~giFalvlTPTrELA~Qia 92 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALPILN----RLSEDPYGIFALVLTPTRELALQIA 92 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHHHHH----hhccCCCcceEEEecchHHHHHHHH
Confidence 356778899987 45679999999998775321 234455666655554 5443444
No 391
>PRK11281 hypothetical protein; Provisional
Probab=31.16 E-value=1.1e+03 Score=33.26 Aligned_cols=185 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000699 1094 EELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKA 1173 (1345)
Q Consensus 1094 eeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaaka 1173 (1345)
++++..|++ +.+.+. .+.++|-.-+.=+.-..-..-=.+..+.=.+|+.+-.+.=++=+..+..++..|+..+..
T Consensus 39 ~~iq~~l~~----~~~~~~-~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~ 113 (1113)
T PRK11281 39 ADVQAQLDA----LNKQKL-LEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113 (1113)
T ss_pred HHHHHHHHH----hhcCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHH----------HHHHHHH
Q 000699 1174 GVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAE----------EAVAAAR 1243 (1345)
Q Consensus 1174 g~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eae----------ea~~~a~ 1243 (1345)
..+=....=...|-+.|+.+..+-+...+.|-+.|..|-.+-.--..|=.+-=|-..|+-|+. ++.+.++
T Consensus 114 ~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~ 193 (1113)
T PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQ 193 (1113)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Q ss_pred HHHHHHHHHHHH-------------------HHHHHHHHhhhhh---hhHHHHHHHHhhcCC
Q 000699 1244 KRAMEAEQETVT-------------------AYKQIDQLKKKHE---MEVSTLNEIIAESRL 1283 (1345)
Q Consensus 1244 ~~~~~~~qe~~k-------------------~~~q~~klk~kh~---~e~~t~~~~laes~l 1283 (1345)
.....+|+..-+ +.+|.|-++.+++ .+|..|+..+.+-|+
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.15 E-value=23 Score=43.62 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..|..++.|.+ +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 34566778886 566679999999764
No 393
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=31.11 E-value=19 Score=42.81 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=13.3
Q ss_pred EeecCCCCCCcceeec
Q 000699 169 VFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~ 184 (1345)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3569999999998764
No 394
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.09 E-value=22 Score=45.10 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=19.4
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3455678987 667889999999764
No 395
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.08 E-value=23 Score=45.65 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 158 VENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 158 VdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
|..++..- ..++-.|++|||||||+..
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 44444321 3467899999999999864
No 396
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.87 E-value=21 Score=37.54 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=12.6
Q ss_pred EeecCCCCCCccee
Q 000699 169 VFAYGQTGSGKTYT 182 (1345)
Q Consensus 169 IfAYGQTGSGKTYT 182 (1345)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999885
No 397
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.75 E-value=1e+03 Score=28.72 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 000699 916 ASEIKHLNRLVQQYKHERECNSIISQ 941 (1345)
Q Consensus 916 aa~I~qLn~Lv~q~k~~~e~~~~~~~ 941 (1345)
-..|+-+.+|+++-..+-+.-|-|||
T Consensus 61 y~Didavt~lLeEkerDLelaA~iGq 86 (306)
T PF04849_consen 61 YNDIDAVTRLLEEKERDLELAARIGQ 86 (306)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHhH
Confidence 34678888888877777776776664
No 398
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=30.51 E-value=7.9e+02 Score=27.31 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHH
Q 000699 1118 KKCVEELHEAMQMAMEGNARML------------EQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINV 1185 (1345)
Q Consensus 1118 k~c~eel~~al~~a~~ghar~~------------e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~ 1185 (1345)
+-.-+|-..||..-|.-|...+ +.|....+.+...+..+..=.....+|=+.|++++- ..| ..
T Consensus 83 ~~~leEhq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de----~~~-~~ 157 (181)
T PF05769_consen 83 RQSLEEHQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDE----ENS-QE 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch----hhh-Hh
Confidence 3456677777777776665433 333334444444554444434445556566665442 122 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 000699 1186 LAAEISALKVAREKERQYLRDENKGLQAQLR 1216 (1345)
Q Consensus 1186 laae~s~lr~ereker~~l~~en~~l~~qlr 1216 (1345)
....|+ .|..||++||..|.
T Consensus 158 ~qe~i~-----------qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 158 EQEIIA-----------QLETENKGLRELLQ 177 (181)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHh
Confidence 444444 45559999998874
No 399
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=30.48 E-value=25 Score=40.29 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCcccEeecCCCCCCcceee
Q 000699 164 GFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 164 GyNaTIfAYGQTGSGKTYTM 183 (1345)
.-+.+|.-||+-|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778999999999999977
No 400
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=30.42 E-value=31 Score=39.33 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=17.7
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.++..+..|. -|+-+|++|+|||...
T Consensus 13 ~~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 3444444554 4566899999999865
No 401
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.30 E-value=3.8e+02 Score=30.20 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHHHHHhhhhhhhHhhhchHHHHHhh-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1200 ERQYLRDENKGLQAQLRDTAEAVQAA-------GELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKK 1265 (1345)
Q Consensus 1200 er~~l~~en~~l~~qlrdtaeav~aa-------gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1265 (1345)
.-..|..|+-.|+.|+|+|=-|||-| ++|=.=++.-||--.-...++-.+|.|+..|-.+|+.|.-
T Consensus 37 ~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 37 GNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777778888888899888 3344444555665555556666777777788877777753
No 402
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=30.25 E-value=30 Score=37.97 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=22.5
Q ss_pred chhhHHHHhcC---CcccEeecCCCCCCccee
Q 000699 154 GVPLVENCLSG---FNSSVFAYGQTGSGKTYT 182 (1345)
Q Consensus 154 v~PLVdsvLeG---yNaTIfAYGQTGSGKTYT 182 (1345)
+-|-+|.++.| .+++++.+|++|||||.-
T Consensus 4 GI~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 4 GIPGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp SSTTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 44667888844 377899999999999754
No 403
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.18 E-value=3.3e+02 Score=27.21 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=51.8
Q ss_pred hhHhhhchHHHHHhhhhhhhhh----hhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000699 1211 LQAQLRDTAEAVQAAGELLVRL----KEAEEAVA----------AARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNE 1276 (1345)
Q Consensus 1211 l~~qlrdtaeav~aagellvrl----~eaeea~~----------~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1276 (1345)
|+.|+.+++-.|+.|=|.|.|= =-+.+..- --+++...++.++..+..+++.|+++.+.|..-.++
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778877777777776651 11222211 246788899999999999999999999999999888
Q ss_pred HHh
Q 000699 1277 IIA 1279 (1345)
Q Consensus 1277 ~la 1279 (1345)
+|+
T Consensus 82 Ll~ 84 (87)
T PF12709_consen 82 LLK 84 (87)
T ss_pred HHH
Confidence 874
No 404
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.99 E-value=22 Score=36.50 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.6
Q ss_pred ccEeecCCCCCCcceee
Q 000699 167 SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM 183 (1345)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999874
No 405
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=29.88 E-value=8.7e+02 Score=29.15 Aligned_cols=71 Identities=28% Similarity=0.505 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000699 1088 GWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVK 1167 (1345)
Q Consensus 1088 ~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk 1167 (1345)
-|+.++ +||.-.-.-|.-.+++++|++ |..-+.+|-..||++++||++|..=|. +.|+..|
T Consensus 185 ~w~~is-~Lr~sV~~KRi~lq~~kq~~K------------L~~IL~~Q~~~Le~W~~le~~h~~sl~------~~~~aL~ 245 (311)
T PF04484_consen 185 AWLRIS-ELRDSVAMKRIELQRLKQELK------------LNSILKSQMPYLEEWAALEREHSSSLS------GATEALK 245 (311)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 688776 688888888888888888876 555677888999999999999997654 5677777
Q ss_pred HHHHHhcccC
Q 000699 1168 KAAAKAGVRG 1177 (1345)
Q Consensus 1168 ~aaakag~kg 1177 (1345)
-+.-|-=+-|
T Consensus 246 a~~lrlP~~~ 255 (311)
T PF04484_consen 246 ASTLRLPVTG 255 (311)
T ss_pred HhcccccccC
Confidence 7777765554
No 406
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.77 E-value=16 Score=45.90 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.9
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999865
No 407
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=29.76 E-value=19 Score=43.65 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.5
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
+--++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 3457899999999998763
No 408
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=29.71 E-value=33 Score=44.59 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.8
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999987
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.69 E-value=40 Score=41.73 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=16.6
Q ss_pred cccEeecCCCCCCcceeecC
Q 000699 166 NSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~G 185 (1345)
...|+-+|.+|+|||+|...
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45688899999999999843
No 410
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=29.48 E-value=28 Score=40.65 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=20.6
Q ss_pred hhhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 155 VPLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 155 ~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.+++..++.+. ..|+-.|.||||||..|-
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 35566666544 456677999999999763
No 411
>PRK11519 tyrosine kinase; Provisional
Probab=29.17 E-value=1.5e+03 Score=30.05 Aligned_cols=148 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHH
Q 000699 922 LNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDE 1001 (1345)
Q Consensus 922 Ln~Lv~q~k~~~e~~~~~~~~re~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqee 1001 (1345)
+|.|++.|-.+.- ..-..+++. +-+|+++.+..+. .++...+.+
T Consensus 246 aN~l~~~Yi~~~~-~~k~~~a~~---------------a~~fL~~ql~~l~--------------------~~L~~aE~~ 289 (719)
T PRK11519 246 LNSITRNYLEQNI-ERKSEEASK---------------SLAFLAQQLPEVR--------------------SRLDVAENK 289 (719)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHHHH--------------------HHHHHHHHH
Q ss_pred HHhhhhhcCc----hhHHHHHHHHHHHHHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHH
Q 000699 1002 LEHYRNFYDL----GEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQ 1077 (1345)
Q Consensus 1002 l~~~~~~~d~----~ErE~Ll~EI~~Lr~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 1077 (1345)
|+.|+.-... .|-+.+++.+.+|+.||.. .+..+..
T Consensus 290 l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~----------------------------------------l~~~~~~ 329 (719)
T PRK11519 290 LNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE----------------------------------------LTFKEAE 329 (719)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHH
Q ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1078 ERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHR 1157 (1345)
Q Consensus 1078 er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr 1157 (1345)
=+.+.++---.++.| ...+..|..+...-+.--..|...-....++--++.=.++.|..||.|..
T Consensus 330 l~~~y~~~hP~v~~l---------------~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~ 394 (719)
T PRK11519 330 ISKLYTKEHPAYRTL---------------LEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQ 394 (719)
T ss_pred HHHHhcccCcHHHHH---------------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000699 1158 KIQ 1160 (1345)
Q Consensus 1158 ~i~ 1160 (1345)
.+.
T Consensus 395 e~~ 397 (719)
T PRK11519 395 ELK 397 (719)
T ss_pred HHh
No 412
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.04 E-value=21 Score=41.69 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=22.1
Q ss_pred CcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceeccc
Q 000699 402 NAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1345)
Q Consensus 402 NSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~ 443 (1345)
-.+|++.+|= +.+| .+++|+|+--++..-++...
T Consensus 185 l~kTivfVTH-----DidE---A~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 185 LGKTIVFVTH-----DIDE---ALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hCCEEEEEec-----CHHH---HHhhhceEEEecCCeEEEeC
Confidence 3567777662 4555 67888888777766655543
No 413
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=29.04 E-value=29 Score=44.56 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=30.2
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..+||.+++ |...... ++..+..++...++-||++|+|||+..
T Consensus 150 p~~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 356777765 3334443 345556677888999999999999876
No 414
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=29.02 E-value=1.4e+02 Score=28.50 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 890 VPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYK 930 (1345)
Q Consensus 890 ~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k 930 (1345)
+-..+|..|..++++++. +..-++-+.-|+.+|+.|+++-
T Consensus 24 lS~~~e~~L~~~~~~~~~-~~W~~eN~eai~~~n~~ve~~G 63 (72)
T PRK13710 24 ISGLVNTAMQNEARRLRA-ERWKAENREGMAEVARFIEMNG 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 456799999999999876 7788888999999999997654
No 415
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.97 E-value=1.3e+02 Score=30.53 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000699 1243 RKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1243 ~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1280 (1345)
.++|.+-++=-++=+.|+++||+|++.||..-++.|.+
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=28.95 E-value=25 Score=43.92 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=31.4
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..+.|+.+.+....=..+++.+ .. +...+..|+-+|.+||||++.-
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred ccCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHH
Confidence 3578999888654333333332 22 2467888999999999998764
No 417
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.94 E-value=24 Score=35.74 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.6
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998754
No 418
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.91 E-value=3.2e+02 Score=34.50 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHhhhchHHHHHhh
Q 000699 1182 FINVLAAEISALKVAR---EKERQYLRDENKGLQAQLRDTAEAVQAA 1225 (1345)
Q Consensus 1182 f~~~laae~s~lr~er---eker~~l~~en~~l~~qlrdtaeav~aa 1225 (1345)
=+..|.|++..+|.+- +++-+.|++||+.||.+..+.-.-|+-|
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4667788888888754 4566778899999988888887766654
No 419
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.90 E-value=79 Score=34.63 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhch
Q 000699 1143 ADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDT 1218 (1345)
Q Consensus 1143 ~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdt 1218 (1345)
.|+|-|||+-++|.-- |=.|| .|++-|+.++++|+..|||=
T Consensus 3 eD~EsklN~AIERnal---------------------------LE~EL--------dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 3 EDFESKLNQAIERNAL---------------------------LESEL--------DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHH---------------------------HHHHH--------HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHhHH---------------------------HHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887422 33455 56777888888888888873
No 420
>PF10789 Phage_RpbA: Phage RNA polymerase binding, RpbA; InterPro: IPR019725 Upon infection, the RpbA encoded phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Probab=28.89 E-value=83 Score=32.30 Aligned_cols=38 Identities=34% Similarity=0.612 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHH
Q 000699 1119 KCVEELHEAMQMAMEGNARMLEQYAD----LEEKHIQLLARHRK 1158 (1345)
Q Consensus 1119 ~c~eel~~al~~a~~ghar~~e~y~~----l~ek~~~l~~~hr~ 1158 (1345)
+|.+|+.+.|| ||.+-+|+ ++|.+ .+++|+.|+.+||.
T Consensus 26 ~~~d~~~~~lq-~~pq~vRf-~lY~~iD~~V~~~wi~Lm~~~r~ 67 (108)
T PF10789_consen 26 QMPDEDKERLQ-AMPQDVRF-ELYKEIDEDVSDKWIELMRKHRE 67 (108)
T ss_pred cCCHHHHHHHH-hCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776 67777775 78875 57899999999995
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.81 E-value=20 Score=44.75 Aligned_cols=19 Identities=37% Similarity=0.316 Sum_probs=16.0
Q ss_pred ccEeecCCCCCCcceeecC
Q 000699 167 SSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~G 185 (1345)
..|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4677889999999999843
No 422
>PRK14974 cell division protein FtsY; Provisional
Probab=28.79 E-value=36 Score=40.76 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.4
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999984
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=26 Score=41.54 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=44.0
Q ss_pred ceecCCCCChhHHHHhhchhh-HHHHhcCCc---ccEeecCCCCCCcceeecCC---CCC-cccc---ccCCCCCCChHH
Q 000699 137 DSVADMEATQLDVFQLVGVPL-VENCLSGFN---SSVFAYGQTGSGKTYTMWGP---ANA-LLEE---NLSSDQQGLTPR 205 (1345)
Q Consensus 137 D~VFd~~aSQedVFe~vv~PL-VdsvLeGyN---aTIfAYGQTGSGKTYTM~G~---~~~-~~~~---~~s~~~~GIIPR 205 (1345)
+.|-+-+.--+.+-+.++.|+ .-++|.|.- ..|+-||+.|+||+|.--.- .+. ++.. .+-+.=.|=--+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 334444444455555666564 345665543 46999999999999953211 111 1100 011122455667
Q ss_pred HHHHHHHHHHH
Q 000699 206 VFERLFSRINE 216 (1345)
Q Consensus 206 al~dLFs~I~e 216 (1345)
.+..||....+
T Consensus 213 LVknLFemARe 223 (439)
T KOG0739|consen 213 LVKNLFEMARE 223 (439)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 424
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=28.74 E-value=39 Score=43.96 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.7
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999986
No 425
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=28.71 E-value=21 Score=46.61 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.3
Q ss_pred cccEeecCCCCCCcceeec
Q 000699 166 NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM~ 184 (1345)
|.-++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5568889999999999983
No 426
>PRK07261 topology modulation protein; Provisional
Probab=28.67 E-value=24 Score=37.63 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=12.7
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998754
No 427
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=28.53 E-value=21 Score=41.52 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.2
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388899999999999998743
No 428
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.48 E-value=1e+03 Score=30.70 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000699 1135 NARMLEQYADLEEKH---IQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGL 1211 (1345)
Q Consensus 1135 har~~e~y~~l~ek~---~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l 1211 (1345)
|..|-++|.|....+ .+|..+-+.+.+-|.||-+.-.--+ +..+|... -.+-..|
T Consensus 31 ~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~-----------i~~~l~~a-----------~~e~~~L 88 (593)
T PF06248_consen 31 HSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENE-----------IQPQLRDA-----------AEELQEL 88 (593)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch-----------hHHHHHHH-----------HHHHHHH
Confidence 567778888777544 3455555555555555543311111 11111111 1123444
Q ss_pred hHhhhchHHHHHhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699 1212 QAQLRDTAEAVQAAGELL---VRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLK 1264 (1345)
Q Consensus 1212 ~~qlrdtaeav~aagell---vrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk 1264 (1345)
+.||+.....+++...|. =+|+++++| ..++++..|-+-.+++++.|+.++
T Consensus 89 ~~eL~~~~~~l~~L~~L~~i~~~l~~~~~a--l~~~~~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 89 KRELEENEQLLEVLEQLQEIDELLEEVEEA--LKEGNYLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhcC
Confidence 455554444444333221 122333332 345778888888888888888763
No 429
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=28.38 E-value=37 Score=44.16 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.8
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 689999999999999999987
No 430
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=28.37 E-value=38 Score=44.12 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.9
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 689999999999999999987
No 431
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=28.26 E-value=44 Score=40.46 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=41.0
Q ss_pred eEE-ec-eecCCCCChhHHHHhhchhhHHHHhcC---CcccEeecCCCCCCcceee---------------------cCC
Q 000699 133 TFT-FD-SVADMEATQLDVFQLVGVPLVENCLSG---FNSSVFAYGQTGSGKTYTM---------------------WGP 186 (1345)
Q Consensus 133 tFt-FD-~VFd~~aSQedVFe~vv~PLVdsvLeG---yNaTIfAYGQTGSGKTYTM---------------------~G~ 186 (1345)
.|. |+ .||+. ++..+.++. -+.....| .+--+.-.|++|||||... -|.
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred eccccchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 454 34 67774 444444442 33344444 3455788999999998543 221
Q ss_pred CCCccccccCCCCCCChHHHHHHHH
Q 000699 187 ANALLEENLSSDQQGLTPRVFERLF 211 (1345)
Q Consensus 187 ~~~~~~~~~s~~~~GIIPRal~dLF 211 (1345)
. ........--||+|...++.|
T Consensus 120 ~---~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 120 G---EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred C---CCCCCccCCcccCCHHHHHHH
Confidence 0 011223345688898888888
No 432
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=28.10 E-value=25 Score=37.10 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.8
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 433
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=28.05 E-value=38 Score=44.05 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999987
No 434
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=27.99 E-value=36 Score=37.36 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=23.1
Q ss_pred chhhHHHHhc-CC--cccEeecCCCCCCcceeec
Q 000699 154 GVPLVENCLS-GF--NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 154 v~PLVdsvLe-Gy--NaTIfAYGQTGSGKTYTM~ 184 (1345)
+-+-+|.++. |+ ..+++-+|++|+|||+...
T Consensus 5 Gi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 5 GVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred ChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 3456788774 54 5578889999999998653
No 435
>PF13173 AAA_14: AAA domain
Probab=27.93 E-value=23 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred cEeecCCCCCCcceeec
Q 000699 168 SVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~ 184 (1345)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999999883
No 436
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=27.77 E-value=1.6e+03 Score=30.03 Aligned_cols=178 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCch
Q 000699 1101 EASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDV-KKAAAKAGVRGAE 1179 (1345)
Q Consensus 1101 e~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~v-k~aaakag~kg~~ 1179 (1345)
.+-.+-||=.-..|..=.+--+|+........+--.|+--|-.||+ +.-++-..|=+++ .-.||-||.--+-
T Consensus 59 ~~lsqqaelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele-------~l~~ae~agraEae~Lraala~ae~~R 131 (739)
T PF07111_consen 59 QALSQQAELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELE-------ALARAEKAGRAEAEELRAALAGAEVVR 131 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHhhHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1180 SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQ 1259 (1345)
Q Consensus 1180 ~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q 1259 (1345)
.+.-.+.-.||..+....+.+..-|...-..-=+-|+-.|+ +|=.+|++-|.-..-.-+..+.+++|.+-|.+|
T Consensus 132 ~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~------~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~q 205 (739)
T PF07111_consen 132 KNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAE------ELEKSLESLETRRAGEAKELAEAQREADLLREQ 205 (739)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhh---HHHHHHHHhhcCCCcccCCcc
Q 000699 1260 IDQLKKKHEME---VSTLNEIIAESRLPKETIRPA 1291 (1345)
Q Consensus 1260 ~~klk~kh~~e---~~t~~~~laes~lp~~~~~~~ 1291 (1345)
+-|.+..++.. +..|+.|+-|--.|+..-+.|
T Consensus 206 Lsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 206 LSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
No 437
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=27.73 E-value=41 Score=43.73 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.8
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999987
No 438
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.65 E-value=8.3e+02 Score=26.62 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA 1221 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea 1221 (1345)
|-.|+.+|..+|++..++-.+| ..+..+-+++....+.|-+.+..+-+..|+.
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA-----------------~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~ 108 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEA-----------------QTLLASYERKQREVQEQADRIVAAAKDEAQA 108 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999998876665443 2344455555555555555555444444443
No 439
>CHL00181 cbbX CbbX; Provisional
Probab=27.59 E-value=25 Score=40.83 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.4
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999976
No 440
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=27.58 E-value=39 Score=44.07 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.7
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 588999999999999999987
No 441
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.56 E-value=7.3e+02 Score=32.19 Aligned_cols=144 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 000699 1135 NARMLEQYADLEEKHIQ-LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQA 1213 (1345)
Q Consensus 1135 har~~e~y~~l~ek~~~-l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~ 1213 (1345)
|-++|..|+.+..+-.+ +-..+.+-...-.+++..-.+..-.....-|.+.=-.||+.+--.-- |-+.|-.|-+.|.
T Consensus 141 ~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g-E~e~L~~e~~rLs- 218 (557)
T COG0497 141 QRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPG-EDEELEEERKRLS- 218 (557)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHh-
Q ss_pred hhhchHHHHHhhhhhhh----------hhhhHHHHH----------HHHHHHHHHHHHHHHHHHH---------------
Q 000699 1214 QLRDTAEAVQAAGELLV----------RLKEAEEAV----------AAARKRAMEAEQETVTAYK--------------- 1258 (1345)
Q Consensus 1214 qlrdtaeav~aagellv----------rl~eaeea~----------~~a~~~~~~~~qe~~k~~~--------------- 1258 (1345)
..-.-+++++.|.++|- .|..|.+++ .-..+....+..+.+.+..
T Consensus 219 n~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~ 298 (557)
T COG0497 219 NSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNR 298 (557)
T ss_pred hHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q ss_pred ---------HHHHHhhhhhhhHHHHHHHHhh
Q 000699 1259 ---------QIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1259 ---------q~~klk~kh~~e~~t~~~~lae 1280 (1345)
.+-.|+|||...+..+-+|+++
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~ 329 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDK 329 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
No 442
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=27.44 E-value=1.5e+02 Score=29.97 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 000699 1147 EKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQ 1202 (1345)
Q Consensus 1147 ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~ 1202 (1345)
..|..+...|+..++-+.+|++.--..+.++. .|++||-.|..+.+..++
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~------el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQ------ELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhcc
Confidence 45667777788888888888888777776664 477777777765555444
No 443
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=27.42 E-value=37 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.8
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 689999999999999999987
No 444
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.40 E-value=23 Score=40.94 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.1
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4888999999999875
No 445
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.37 E-value=28 Score=40.86 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=22.6
Q ss_pred hHHH-HhcCCcccEeecCCCCCCcceee
Q 000699 157 LVEN-CLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVds-vLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
||.. +-+||.--|+|.|.||.|||..|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 4543 45899999999999999999876
No 446
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.29 E-value=1.8e+03 Score=30.51 Aligned_cols=58 Identities=34% Similarity=0.453 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHH
Q 000699 1092 LAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYAD----LEEKHI 1150 (1345)
Q Consensus 1092 lteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~----l~ek~~ 1150 (1345)
+.|-++.|++--|+-+|++..+++.=-.--.+|+|-+--| +|---||||.+| |+||-.
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdknlnlEekVk 465 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMVEQLTDKNLNLEEKVK 465 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhhccCHHHHHH
Confidence 4566788888889999999999987666677888877654 588899999997 455544
No 447
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=27.08 E-value=32 Score=42.97 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=18.8
Q ss_pred hHHHHhcCCcccEeecCCCCCCcceee
Q 000699 157 LVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 157 LVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 3556678876 677789999999654
No 448
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.03 E-value=39 Score=41.71 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.8
Q ss_pred ccEeecCCCCCCcceeec
Q 000699 167 SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~ 184 (1345)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999984
No 449
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.03 E-value=1.9e+03 Score=30.70 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=84.9
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000699 1076 EQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLAR 1155 (1345)
Q Consensus 1076 e~er~~wte~eS~wIslteeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~ 1155 (1345)
-.|+.+.=..+.-|+-+.+- +.+|.......-+.+..+ ++|.+++++....-=.---++=|-=|.+++.-+.-=++
T Consensus 260 ~~~~l~~Lk~k~~W~~V~~~-~~ql~~~~~~i~~~qek~---~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 260 LKENLEQLKAKMAWAWVNEV-ERQLNNQEEEIKKKQEKV---DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 45566666678889877764 456666666655555444 46778877766542221222333344444444444556
Q ss_pred HHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhH
Q 000699 1156 HRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEA 1235 (1345)
Q Consensus 1156 hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~ea 1235 (1345)
-+.|++.+++|+.+..++ +.+-. .-.+-+...+.+|++-+.|.-|+-|-=+-+ -+++=.++-|.
T Consensus 336 d~Ei~~~r~~~~~~~re~----------~~~~~----~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~--~~~~~~~~~e~ 399 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREV----------NDLKE----EIREIENSIRKLKKEVDRLEKQIADLEKQT--NNELGSELEER 399 (1074)
T ss_pred hHHHHHHHHHHHHHHHHH----------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhHHHH
Confidence 666666666665544321 11111 112233333334444444444433322221 34444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1236 EEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1236 eea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
|.=...-++.-..+|.....|..+.+.++++
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444445555555555555555444
No 450
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=27.02 E-value=24 Score=36.58 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.1
Q ss_pred EeecCCCCCCccee
Q 000699 169 VFAYGQTGSGKTYT 182 (1345)
Q Consensus 169 IfAYGQTGSGKTYT 182 (1345)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 451
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=26.89 E-value=23 Score=32.64 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.3
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999765
No 452
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=26.86 E-value=2.5e+02 Score=37.17 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000699 1234 EAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEII 1278 (1345)
Q Consensus 1234 eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1278 (1345)
+.+++....+++..+++++.+++++++.++.++|..++..+..+|
T Consensus 226 ~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l 270 (759)
T PF01496_consen 226 TPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYL 270 (759)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777766665554444
No 453
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=26.67 E-value=1.2e+02 Score=36.83 Aligned_cols=137 Identities=23% Similarity=0.260 Sum_probs=75.8
Q ss_pred cCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCC---ccccccCCCCCCChHH---HHHHHHHH
Q 000699 140 ADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANA---LLEENLSSDQQGLTPR---VFERLFSR 213 (1345)
Q Consensus 140 Fd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~---~~~~~~s~~~~GIIPR---al~dLFs~ 213 (1345)
|+-...|..++.-+- ..++.|-.-+++-.|+-|||||+-+--.-.. ..+.-..-.-.|.+.- ++..|-.+
T Consensus 27 ~g~~~~~~~l~~~lk----qt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 27 FGVQDEQKHLSELLK----QTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred eehHHHHHHHHHHHH----HHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 333445666666543 4567898889999999999999987321110 0000011122355555 67777666
Q ss_pred HHHHHHhhhcccceeEEEEEEEE--------------------EecceeeecCCCCCCC------cceeecCCCCeEEcC
Q 000699 214 INEEQIKHADKQLNYQCRCSFLE--------------------IYNEQITDLLDPSQRN------LQIREDVKSGVYVEN 267 (1345)
Q Consensus 214 I~eeq~k~~~~~~~ysV~VSflE--------------------IYNEkV~DLL~p~~~~------L~IrED~~~gv~V~G 267 (1345)
++.+..+. ..+..||-| |+--.=+||..+..+. +.+.+.....+.|-|
T Consensus 103 l~~e~~~~------~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig 176 (408)
T KOG2228|consen 103 LALELNRI------VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIG 176 (408)
T ss_pred HHHHHhhh------heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEE
Confidence 65443221 223333333 2222236777665432 234444555666766
Q ss_pred cEEEEecCHHHHHHHHHHHhhccc
Q 000699 268 LTEEYVCTMKDVTQLLMKGLSNRR 291 (1345)
Q Consensus 268 Ltev~V~S~eE~l~LL~~G~knR~ 291 (1345)
+ ++--|++.+|.+-.+.|-
T Consensus 177 ~-----Ttrld~lE~LEKRVKSRF 195 (408)
T KOG2228|consen 177 V-----TTRLDILELLEKRVKSRF 195 (408)
T ss_pred e-----eccccHHHHHHHHHHhhc
Confidence 4 456688888887666653
No 454
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=26.66 E-value=33 Score=41.01 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=21.4
Q ss_pred hhHHHHhcCCcccEeecCCCCCCcceeec
Q 000699 156 PLVENCLSGFNSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 156 PLVdsvLeGyNaTIfAYGQTGSGKTYTM~ 184 (1345)
.++..++.+. +.|+-.|.||||||.+|-
T Consensus 169 ~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 169 RLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 5566666643 688889999999998764
No 455
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=26.62 E-value=41 Score=43.93 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.7
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 599999999999999999986
No 456
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=26.60 E-value=6.8e+02 Score=31.30 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHH
Q 000699 1152 LLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAE 1220 (1345)
Q Consensus 1152 l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtae 1220 (1345)
|-.|...|..+|++.+++. .|+..++.+-|+..+..+.|-+.+..+-+..|+
T Consensus 30 l~~R~~~I~~~L~eAe~a~-----------------~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~ 81 (445)
T PRK13428 30 MAARQDTVRQQLAESATAA-----------------DRLAEADQAHTKAVEDAKAEAARVVEEAREDAE 81 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999988653 334444455555555555555555444444443
No 457
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.42 E-value=1.6e+02 Score=34.56 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhch
Q 000699 1181 KFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDT 1218 (1345)
Q Consensus 1181 ~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdt 1218 (1345)
+|+..+..-+..+ ..|++||+.|+.|+..-
T Consensus 56 ~~~~~~~~~~~~~--------~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 56 EVFDGISENLKDV--------NNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4555555555444 44778899988887543
No 458
>PRK08233 hypothetical protein; Provisional
Probab=26.42 E-value=28 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.2
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999865
No 459
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=26.37 E-value=9.8e+02 Score=27.73 Aligned_cols=65 Identities=6% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHH-HHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 000699 1182 FINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEA-VQAAGELLVRLKEAEEAVAAARKRAMEA 1249 (1345)
Q Consensus 1182 f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaea-v~aagellvrl~eaeea~~~a~~~~~~~ 1249 (1345)
|..-.+.+|+.|..+....|+-+-..+..|...+.+|... |.=|= -.-.++.+.+..|++.+..+
T Consensus 88 l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K---~~Y~~~~~~~e~ar~K~~~a 153 (234)
T cd07686 88 LNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLK---CSYRQLTKEVNSAKEKYKDA 153 (234)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHh
Confidence 5566889999999999999998888888888888775533 32110 12234455555555554443
No 460
>PRK08118 topology modulation protein; Reviewed
Probab=26.32 E-value=28 Score=37.07 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=11.7
Q ss_pred EeecCCCCCCcce
Q 000699 169 VFAYGQTGSGKTY 181 (1345)
Q Consensus 169 IfAYGQTGSGKTY 181 (1345)
|+-.|+.|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 6788999999995
No 461
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=26.27 E-value=31 Score=44.05 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.0
Q ss_pred ccEeecCCCCCCcceeec
Q 000699 167 SSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM~ 184 (1345)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 345678999999999984
No 462
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.24 E-value=24 Score=47.08 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=17.8
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
-|+-.+..|+||||||++|-.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CcccEEEECCCCCCHHHHHHH
Confidence 377789999999999999843
No 463
>PRK10865 protein disaggregation chaperone; Provisional
Probab=26.12 E-value=41 Score=44.89 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=15.0
Q ss_pred ccEeecCCCCCCcceee
Q 000699 167 SSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 167 aTIfAYGQTGSGKTYTM 183 (1345)
+.++-+|+||+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56888899999999986
No 464
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=26.01 E-value=31 Score=43.23 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=30.6
Q ss_pred eeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 132 HTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 132 ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
..+.||.+++....=..+.+.+ .. +...+..|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4688998887653323333222 12 3456788999999999998865
No 465
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=25.90 E-value=2.2e+03 Score=30.91 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=64.5
Q ss_pred hhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-hh
Q 000699 1207 ENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKR-----AMEAEQETVTAYKQIDQLKKKHEMEVSTLNEII-AE 1280 (1345)
Q Consensus 1207 en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~-----~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l-ae 1280 (1345)
++-+.+.|.|--++++---=.|.-+++|.+.-...-... ...+.++..+|..+.++|...+..=..+|+||= +-
T Consensus 992 ~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i 1071 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQI 1071 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 455667777777888877778888888887766554444 445558999999999999999988888898886 44
Q ss_pred cCCCcccCCccccC
Q 000699 1281 SRLPKETIRPAFDD 1294 (1345)
Q Consensus 1281 s~lp~~~~~~~~~~ 1294 (1345)
.++-.....|-|.+
T Consensus 1072 ~~~k~eL~~~~~kd 1085 (1294)
T KOG0962|consen 1072 KKLKQELREKDFKD 1085 (1294)
T ss_pred HHHHHHhhhhhhcc
Confidence 45555555566665
No 466
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=25.90 E-value=41 Score=43.60 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 141 DMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 141 d~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.....|+.++..+. .+.-.+...-++..|+||||||.+.+-
T Consensus 261 ~lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va~~ 301 (681)
T PRK10917 261 ELTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVAAL 301 (681)
T ss_pred CCCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHHHH
Confidence 34455555554433 233344455689999999999987643
No 467
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=25.82 E-value=34 Score=40.86 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=30.5
Q ss_pred EEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceeecC
Q 000699 134 FTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 134 FtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
|.|..|.+ |+++ ..-|+-.+++..-+-|+-.|.+|+|||..+-+
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 45666654 4444 23455666776667789999999999998755
No 468
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=25.81 E-value=32 Score=40.41 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.1
Q ss_pred cCCcccEeecCCCCCCcceeecC
Q 000699 163 SGFNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM~G 185 (1345)
.+-+.-++-||+.|||||.||.-
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 20 SSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred cCCceEEEEECCCCCCHHHHHHH
Confidence 45566789999999999999854
No 469
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=25.77 E-value=26 Score=40.45 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=18.7
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|+.-.|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999765
No 470
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.69 E-value=30 Score=34.62 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.5
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999854
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=25.62 E-value=45 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=20.7
Q ss_pred HHHHhhchhhHHHHhc-CCcccEeecCCCCCCcceee
Q 000699 148 DVFQLVGVPLVENCLS-GFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 148 dVFe~vv~PLVdsvLe-GyNaTIfAYGQTGSGKTYTM 183 (1345)
.+|..++.-|...+-. |..-.|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444333222222 33445666799999999866
No 472
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=25.58 E-value=34 Score=44.29 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=29.2
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
.+.|+.+++....-..+.+.+. . +...+..|+-+|.+|||||+.-
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred cccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHHH
Confidence 3567777765443333333322 2 3466788999999999999854
No 473
>PRK10869 recombination and repair protein; Provisional
Probab=25.58 E-value=1.5e+03 Score=29.07 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=37.0
Q ss_pred HHHHhhHHHHHHHHHHhcccCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHH
Q 000699 1157 RKIQEGIEDVKKAAAKAGVRGAE-SKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQ 1223 (1345)
Q Consensus 1157 r~i~~gi~~vk~aaakag~kg~~-~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~ 1223 (1345)
..|.+=+..+++..-|-|.-=.+ ..|.+.+.+||..|.. .+...+.|.++-..++.+|...|+.++
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~-~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDD-QEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777787732111 2366666666666654 333444555555555555555544433
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=25.45 E-value=26 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=14.0
Q ss_pred cEeecCCCCCCcceee
Q 000699 168 SVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM 183 (1345)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999887
No 475
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.38 E-value=26 Score=41.37 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.9
Q ss_pred CcccEeecCCCCCCcceeecC
Q 000699 165 FNSSVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 165 yNaTIfAYGQTGSGKTYTM~G 185 (1345)
...+|+-.|.||||||++|.-
T Consensus 142 ~~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred cCCcEEEECCCCCCHHHHHHH
Confidence 345678889999999999843
No 476
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=25.32 E-value=35 Score=44.84 Aligned_cols=18 Identities=50% Similarity=0.702 Sum_probs=15.3
Q ss_pred cccEeecCCCCCCcceee
Q 000699 166 NSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 166 NaTIfAYGQTGSGKTYTM 183 (1345)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556778899999999877
No 477
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=25.30 E-value=35 Score=44.65 Aligned_cols=44 Identities=32% Similarity=0.330 Sum_probs=28.0
Q ss_pred ceecCCCCChhHHHHhhc------hhhHHHHhcCCcccEeecCCCCCCcceee
Q 000699 137 DSVADMEATQLDVFQLVG------VPLVENCLSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 137 D~VFd~~aSQedVFe~vv------~PLVdsvLeGyNaTIfAYGQTGSGKTYTM 183 (1345)
++-+++++-|..+|-.-. ..+|..+| |-|+.|.+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 333444444444443222 24788889 99987665 9999999853
No 478
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.28 E-value=37 Score=38.43 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=26.8
Q ss_pred cEeecCCCCCCcceeecCCCCCcc-ccccCCCCCCChHHHHHHHHHHHH
Q 000699 168 SVFAYGQTGSGKTYTMWGPANALL-EENLSSDQQGLTPRVFERLFSRIN 215 (1345)
Q Consensus 168 TIfAYGQTGSGKTYTM~G~~~~~~-~~~~s~~~~GIIPRal~dLFs~I~ 215 (1345)
+-..+|++|||||.|+-.-..... .--.-.-..++=...+..||.-+.
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~ 82 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLA 82 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHh
Confidence 345699999999999843111000 000112245666777777776654
No 479
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=25.21 E-value=1.1e+03 Score=27.11 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=27.5
Q ss_pred HHHHhhHH-HHHHHHHHhcccC---------chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000699 1157 RKIQEGIE-DVKKAAAKAGVRG---------AESKFINVLAAEISALKVAREKERQYLRDE 1207 (1345)
Q Consensus 1157 r~i~~gi~-~vk~aaakag~kg---------~~~~f~~~laae~s~lr~ereker~~l~~e 1207 (1345)
..|...|. .++++.++-|+.= --..+..|+.+ ..+++|++++...+-|
T Consensus 110 ~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~---~~~A~~~~~a~~~~Ae 167 (262)
T cd03407 110 DEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE---INAAQRQRVAAVHKAE 167 (262)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 34555543 4566666666431 12345666665 4577788887776665
No 480
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=25.17 E-value=46 Score=43.44 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.9
Q ss_pred cCCcccEeecCCCCCCcceee
Q 000699 163 SGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 163 eGyNaTIfAYGQTGSGKTYTM 183 (1345)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999986
No 481
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.12 E-value=7.9e+02 Score=25.55 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000699 1093 AEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK 1172 (1345)
Q Consensus 1093 teeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaak 1172 (1345)
...++..++.+......++.+|+...+=..+..+=..+-|.=||.-++....|.+.+..+=.........++..|.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~ 91 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888899999999999999999999999999999999999999999999877777777666665554432
Q ss_pred hcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 000699 1173 AGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQL 1215 (1345)
Q Consensus 1173 ag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~ql 1215 (1345)
+-..-. .==..|-.||+.++. =..-|.++|+=|-.||
T Consensus 92 ~e~sw~--~qk~~le~e~~~~~~----r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 92 SEASWE--EQKEQLEKELSELEQ----RIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHhHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 211110 001233344443332 2334666777776666
No 482
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=25.06 E-value=46 Score=38.63 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=23.0
Q ss_pred chhhHHHHhcCC---cccEeecCCCCCCcceeec
Q 000699 154 GVPLVENCLSGF---NSSVFAYGQTGSGKTYTMW 184 (1345)
Q Consensus 154 v~PLVdsvLeGy---NaTIfAYGQTGSGKTYTM~ 184 (1345)
+.+-++.+|.|- ...+.-||.+|||||..++
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 335677888753 4556899999999998654
No 483
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=24.96 E-value=38 Score=42.89 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=30.4
Q ss_pred CeeEEeceecCCCCChhHHHHhhchhhHHHHhcCCcccEeecCCCCCCcc
Q 000699 131 GHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKT 180 (1345)
Q Consensus 131 ~ktFtFD~VFd~~aSQedVFe~vv~PLVdsvLeGyNaTIfAYGQTGSGKT 180 (1345)
...|+||.+.+....=. .+. .+ -.-+.+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~----~~~-~~-akr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAML----RVL-EL-AKRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHH----HHH-HH-HHhhcCCCCcEEEecCCCccHH
Confidence 35699999988653221 111 11 2335799999999999999993
No 484
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=29 Score=42.88 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=42.4
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHH-hc----CCcccEeecCCCCCCcceeecCCCC---C----ccccccCCCCC
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENC-LS----GFNSSVFAYGQTGSGKTYTMWGPAN---A----LLEENLSSDQQ 200 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsv-Le----GyNaTIfAYGQTGSGKTYTM~G~~~---~----~~~~~~s~~~~ 200 (1345)
.++|+.+-+-+.-.+.+.+.+..|+...= +. +....|+-||+.|+|||++---... . .......+..-
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 34455554433333444444444433221 22 3455799999999999986532111 0 00112233445
Q ss_pred CChHHHHHHHHHHH
Q 000699 201 GLTPRVFERLFSRI 214 (1345)
Q Consensus 201 GIIPRal~dLFs~I 214 (1345)
|-.-..+..+|...
T Consensus 318 Gesek~ir~~F~~A 331 (494)
T COG0464 318 GESEKNIRELFEKA 331 (494)
T ss_pred chHHHHHHHHHHHH
Confidence 66666777777654
No 485
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=24.93 E-value=1e+02 Score=40.08 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH--H--hhcCCCcccC
Q 000699 1242 ARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEI--I--AESRLPKETI 1288 (1345)
Q Consensus 1242 a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~--l--aes~lp~~~~ 1288 (1345)
|+|=...+...++....+|||||++|...|..+|.. | ||-+|=....
T Consensus 362 aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 362 AEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 344444566677778889999999999999988863 2 5555544333
No 486
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=45 Score=38.82 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=49.6
Q ss_pred eEEeceecCCCCChhHHHHhhchhhHHHHh---cCCc--ccEeecCCCCCCcceeecCCCCC----cc---ccccCCCCC
Q 000699 133 TFTFDSVADMEATQLDVFQLVGVPLVENCL---SGFN--SSVFAYGQTGSGKTYTMWGPANA----LL---EENLSSDQQ 200 (1345)
Q Consensus 133 tFtFD~VFd~~aSQedVFe~vv~PLVdsvL---eGyN--aTIfAYGQTGSGKTYTM~G~~~~----~~---~~~~s~~~~ 200 (1345)
..+|..|=+-+..-++|-+.+-.||...-| -|.. -.|+.||+.|+|||...-.-.+. +. +...-..--
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 345556666666666777777777766544 1443 35899999999997533221110 00 000111234
Q ss_pred CChHHHHHHHHHHHHH
Q 000699 201 GLTPRVFERLFSRINE 216 (1345)
Q Consensus 201 GIIPRal~dLFs~I~e 216 (1345)
|==||.++++|....+
T Consensus 231 gegprmvrdvfrlake 246 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKE 246 (408)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 5669999999986543
No 487
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.90 E-value=34 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.4
Q ss_pred hcCCcccEeecCCCCCCcceee
Q 000699 162 LSGFNSSVFAYGQTGSGKTYTM 183 (1345)
Q Consensus 162 LeGyNaTIfAYGQTGSGKTYTM 183 (1345)
+...+..|+-+|.+||||++.-
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHH
Confidence 4567889999999999997654
No 488
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=24.90 E-value=1.5e+03 Score=28.58 Aligned_cols=30 Identities=33% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 898 LAGAIRREMALEEFCAKQASEIKHLNRLVQ 927 (1345)
Q Consensus 898 laga~rrE~~le~~c~~qaa~I~qLn~Lv~ 927 (1345)
-+.|-+=++++|+..+--+++-+|+.|=++
T Consensus 124 e~~Ad~id~a~Eeaia~a~aeeEq~~Reie 153 (672)
T KOG4722|consen 124 EAEADEIDAALEEAIAMAAAEEEQEHREIE 153 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788899998888999999988774
No 489
>PHA02624 large T antigen; Provisional
Probab=24.77 E-value=45 Score=43.00 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=23.2
Q ss_pred hHHHHhcCCcc--cEeecCCCCCCcceeecC
Q 000699 157 LVENCLSGFNS--SVFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 157 LVdsvLeGyNa--TIfAYGQTGSGKTYTM~G 185 (1345)
++..++.|... ||+-||+.|||||+-..+
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 36677788776 999999999999986543
No 490
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.76 E-value=34 Score=35.86 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.9
Q ss_pred EeecCCCCCCcceee
Q 000699 169 VFAYGQTGSGKTYTM 183 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM 183 (1345)
++-+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999855
No 491
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.67 E-value=1.1e+03 Score=27.16 Aligned_cols=100 Identities=21% Similarity=0.310 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHH
Q 000699 1143 ADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAV 1222 (1345)
Q Consensus 1143 ~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav 1222 (1345)
++|-.|=.+|-..=..|..-++.++. +.+|+.-+..|+..|..||..=-+.||.=|.- .+|-|+|
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~----------ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~D-----In~lE~i 68 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLEN----------EEKCLEEYRKEMEELLQERMAHVEELRQINQD-----INTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 44555555555544555555655554 56788888888888877665544444443322 2344443
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000699 1223 QAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKK 1266 (1345)
Q Consensus 1223 ~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1266 (1345)
++.|+..-...++-+..+..|...|+-+||.+++-
T Consensus 69 ---------Ikqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 69 ---------IKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777788888899999999988776
No 492
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.63 E-value=5.2e+02 Score=27.38 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=34.3
Q ss_pred hhhhHhhhchHHHHHhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000699 1209 KGLQAQLRDTAEAVQAAGE-LLVRLKEAEEAVAAARKRAMEAEQETVTAYKQI 1260 (1345)
Q Consensus 1209 ~~l~~qlrdtaeav~aage-llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~ 1260 (1345)
-++|.-|+=+|++|.+-=. |--|.||.|...+..-..+.+-++...+.--++
T Consensus 34 ~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L 86 (131)
T PF10158_consen 34 SRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQL 86 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577789999999987755 457899998877666555544444443333333
No 493
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.58 E-value=1.3e+03 Score=27.79 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHH
Q 000699 1122 EELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKER 1201 (1345)
Q Consensus 1122 eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker 1201 (1345)
+.|++.+..--..-+.+..+=+-|.+-+..|..+|-.++.-+..+++...-..... .--.+.|-++|..+..+=+.-+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d--~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD--PTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000699 1202 QYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKH 1267 (1345)
Q Consensus 1202 ~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh 1267 (1345)
..+.+-+..|+.=--+-.+...==.|++..+++||- +-++.-.---.|..+|+.+++.|.+.|
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~---~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK---KLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHh
No 494
>PRK06217 hypothetical protein; Validated
Probab=24.58 E-value=31 Score=36.79 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=12.3
Q ss_pred EeecCCCCCCccee
Q 000699 169 VFAYGQTGSGKTYT 182 (1345)
Q Consensus 169 IfAYGQTGSGKTYT 182 (1345)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999874
No 495
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.57 E-value=30 Score=31.34 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.3
Q ss_pred EeecCCCCCCcceeecC
Q 000699 169 VFAYGQTGSGKTYTMWG 185 (1345)
Q Consensus 169 IfAYGQTGSGKTYTM~G 185 (1345)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46678889999998744
No 496
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=24.56 E-value=2.6e+03 Score=31.34 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000699 1093 AEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK 1172 (1345)
Q Consensus 1093 teeLR~eLe~~r~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaak 1172 (1345)
+..+.-+|-+.+...+++++|+..-|+=.+=|..+=.|...- |--|.-.|..|-..|--++ -|..+=..---
T Consensus 726 ~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e-------~~~l~~e~~~L~~~l~~lQ-t~~~~~e~s~~ 797 (1822)
T KOG4674|consen 726 VHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE-------LEKLSAEQESLQLLLDNLQ-TQKNELEESEM 797 (1822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 446778888999999999999988887766666665554443 3333333333333333222 22222222233
Q ss_pred hcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000699 1173 AGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQE 1252 (1345)
Q Consensus 1173 ag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe 1252 (1345)
|++.-|+ .=|..|-.||+.||-+-+.++..++.-+..+..||+++-==|-.++-.+ ..+-+.++.++++...++++
T Consensus 798 ~~k~~~e-~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~---~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 798 ATKDKCE-SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESEL---KSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4555566 4589999999999999999999999999999999998877777666554 44456788888888888888
Q ss_pred HHHHHHHHHHHhh
Q 000699 1253 TVTAYKQIDQLKK 1265 (1345)
Q Consensus 1253 ~~k~~~q~~klk~ 1265 (1345)
...|.++|..++-
T Consensus 874 ~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 874 LSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHhHH
Confidence 8888777766553
No 497
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.50 E-value=8.1e+02 Score=25.42 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000699 1234 EAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAE 1280 (1345)
Q Consensus 1234 eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1280 (1345)
..++|...=++|...++...+++.+++.++++.++.=...|.+.-++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999999999999888777777665543
No 498
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.41 E-value=1.7e+03 Score=29.13 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=49.6
Q ss_pred hhhhHHHHhhHHHHHHHHHhhhcC----ccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHhhh
Q 000699 962 EFMDEEFASLMHEHKLLKEKYENH----PEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYID 1033 (1345)
Q Consensus 962 ~~~~ee~~~l~~e~k~l~~~~~~~----pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~Lr~ql~~~~~ 1033 (1345)
+-..+|+..|+.+.+-||..+++- -+|=+++.|...++.+|..-+. |++.|.+|+=+++.+.+...+
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~-----~~d~l~k~vw~~~l~~~~~f~ 374 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQS-----ELDRLSKEVWELKLEIEDFFK 374 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHH
Confidence 345678888888888888877764 4677888888888888886554 778888888777776554443
No 499
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.32 E-value=2.7e+02 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=25.8
Q ss_pred hhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHH
Q 000699 1133 EGNARMLEQYA--DLEEKHIQLLARHRKIQEGIEDVKK 1168 (1345)
Q Consensus 1133 ~ghar~~e~y~--~l~ek~~~l~~~hr~i~~gi~~vk~ 1168 (1345)
.|--.++..|. ..+|||..|..+|+.+.+.|+...+
T Consensus 164 ~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~ 201 (259)
T PF08657_consen 164 RGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEA 201 (259)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667776 7888888888888888777765543
No 500
>PRK10698 phage shock protein PspA; Provisional
Probab=24.22 E-value=8.9e+02 Score=27.56 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhh----
Q 000699 1157 RKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRL---- 1232 (1345)
Q Consensus 1157 r~i~~gi~~vk~aaakag~kg~~~~f~~~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl---- 1232 (1345)
|-|.+.+.+||++.|++ -+.+.+-.+.+.+-......==+----||++-=|=|-|-
T Consensus 34 ~em~~~l~~~r~alA~~--------------------~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~ 93 (222)
T PRK10698 34 QEMEDTLVEVRSTSARA--------------------LAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIE 93 (222)
T ss_pred HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000699 1233 -KEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEM 1269 (1345)
Q Consensus 1233 -~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~ 1269 (1345)
+.+++.+..-+......++..++|+.++.+|+.|...
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!