Query 000701
Match_columns 1344
No_of_seqs 536 out of 6247
Neff 10.1
Searched_HMMs 46136
Date Mon Apr 1 22:21:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-77 3E-82 736.7 46.5 796 16-905 12-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-59 3.1E-64 615.7 52.3 690 149-966 180-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-38 1.6E-42 352.9 17.7 272 158-432 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 6.8E-33 1.5E-37 367.1 28.7 139 1054-1237 451-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 3.4E-32 7.3E-37 360.5 26.6 513 505-1126 71-591 (968)
6 KOG0618 Serine/threonine phosp 99.9 4E-25 8.6E-30 255.4 -0.3 454 541-1231 33-488 (1081)
7 KOG0618 Serine/threonine phosp 99.9 2.6E-23 5.6E-28 240.5 -2.3 484 558-1272 3-490 (1081)
8 PLN03210 Resistant to P. syrin 99.9 5.9E-21 1.3E-25 251.8 19.1 354 542-1023 547-909 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 4.5E-24 9.7E-29 223.3 -9.6 489 509-1119 50-541 (565)
10 KOG4194 Membrane glycoprotein 99.8 2.1E-21 4.5E-26 212.7 8.2 67 1053-1120 363-430 (873)
11 KOG4194 Membrane glycoprotein 99.8 4E-21 8.6E-26 210.5 9.1 154 525-693 77-233 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 7.7E-23 1.7E-27 214.1 -7.8 155 528-700 47-202 (565)
13 KOG0444 Cytoskeletal regulator 99.8 2.8E-21 6.1E-26 212.4 -1.5 129 526-658 7-138 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 2.4E-21 5.3E-26 212.9 -3.0 260 509-840 12-278 (1255)
15 KOG4237 Extracellular matrix p 99.5 1E-15 2.2E-20 161.4 -3.1 116 541-657 79-199 (498)
16 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 138.3 -4.1 166 517-700 24-192 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 9.8E-13 2.1E-17 160.1 13.7 118 553-697 201-318 (788)
18 PRK04841 transcriptional regul 99.4 4.6E-11 1E-15 158.4 28.9 296 148-480 9-333 (903)
19 PRK15387 E3 ubiquitin-protein 99.4 6.4E-12 1.4E-16 153.1 15.5 92 554-658 223-314 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.3 2.4E-12 5.2E-17 160.6 7.1 266 515-846 512-786 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 1.3E-11 2.8E-16 151.8 12.6 93 555-657 180-273 (754)
22 PRK00411 cdc6 cell division co 99.3 1.2E-09 2.6E-14 129.1 28.7 288 151-458 28-357 (394)
23 KOG0617 Ras suppressor protein 99.2 4.4E-13 9.6E-18 124.7 -2.3 145 509-659 38-186 (264)
24 PRK15370 E3 ubiquitin-protein 99.2 3E-11 6.5E-16 148.6 10.9 173 509-713 183-356 (754)
25 COG2909 MalT ATP-dependent tra 99.2 1.1E-09 2.4E-14 128.8 21.5 293 151-481 17-340 (894)
26 KOG4341 F-box protein containi 99.2 5.8E-13 1.2E-17 142.3 -5.1 43 921-963 188-230 (483)
27 KOG4341 F-box protein containi 99.2 5.5E-13 1.2E-17 142.5 -6.9 115 896-1019 139-254 (483)
28 PF01637 Arch_ATPase: Archaeal 99.1 1.1E-10 2.4E-15 127.6 9.9 193 155-350 1-233 (234)
29 TIGR03015 pepcterm_ATPase puta 99.1 8.4E-09 1.8E-13 115.0 24.6 182 171-355 40-242 (269)
30 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.4E-16 131.3 0.3 221 488-714 53-309 (498)
31 TIGR02928 orc1/cdc6 family rep 99.1 3E-08 6.4E-13 116.0 29.1 290 151-459 13-350 (365)
32 PF05729 NACHT: NACHT domain 99.0 2.8E-09 6E-14 109.3 12.4 143 175-322 1-164 (166)
33 TIGR00635 ruvB Holliday juncti 98.9 1.5E-07 3.2E-12 107.0 21.6 270 153-459 4-289 (305)
34 PF14580 LRR_9: Leucine-rich r 98.9 2.3E-09 5E-14 106.8 5.2 130 550-689 16-148 (175)
35 PF14580 LRR_9: Leucine-rich r 98.8 1.5E-09 3.3E-14 108.1 3.6 124 560-696 4-128 (175)
36 PTZ00112 origin recognition co 98.8 9.8E-07 2.1E-11 105.1 25.0 205 151-356 753-987 (1164)
37 PRK00080 ruvB Holliday junctio 98.8 1.7E-07 3.6E-12 106.9 18.2 273 151-460 23-311 (328)
38 COG3899 Predicted ATPase [Gene 98.7 3.5E-07 7.7E-12 115.6 20.7 306 154-481 1-388 (849)
39 cd00116 LRR_RI Leucine-rich re 98.7 1.4E-08 3E-13 117.0 6.7 138 547-693 17-177 (319)
40 KOG1259 Nischarin, modulator o 98.7 1.9E-09 4.2E-14 110.0 -1.0 133 553-698 284-416 (490)
41 PRK13342 recombination factor 98.7 2.5E-06 5.3E-11 100.4 23.4 191 152-368 11-217 (413)
42 cd00116 LRR_RI Leucine-rich re 98.6 2.9E-08 6.3E-13 114.3 5.0 107 550-658 48-177 (319)
43 COG2256 MGS1 ATPase related to 98.6 1.1E-05 2.5E-10 87.7 24.0 234 152-414 23-279 (436)
44 COG1474 CDC6 Cdc6-related prot 98.6 7.2E-06 1.6E-10 93.0 22.8 202 152-354 16-241 (366)
45 KOG0532 Leucine-rich repeat (L 98.6 4.5E-09 9.7E-14 117.2 -2.9 104 550-657 118-222 (722)
46 KOG0532 Leucine-rich repeat (L 98.6 6.5E-09 1.4E-13 115.9 -2.2 157 542-715 88-246 (722)
47 COG3903 Predicted ATPase [Gene 98.5 1.2E-07 2.6E-12 103.7 7.3 291 173-481 13-316 (414)
48 PRK06893 DNA replication initi 98.5 8.9E-07 1.9E-11 94.8 12.9 153 172-352 37-204 (229)
49 PTZ00202 tuzin; Provisional 98.5 1.6E-05 3.4E-10 88.2 21.7 164 148-321 257-434 (550)
50 PRK14949 DNA polymerase III su 98.5 4.9E-06 1.1E-10 101.4 19.6 179 152-348 15-217 (944)
51 PRK07003 DNA polymerase III su 98.4 9.1E-06 2E-10 97.1 19.9 184 152-353 15-223 (830)
52 PF13401 AAA_22: AAA domain; P 98.4 5.2E-07 1.1E-11 88.0 7.9 116 173-290 3-125 (131)
53 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 4.9E-11 92.6 13.4 168 158-353 22-203 (226)
54 PRK14961 DNA polymerase III su 98.4 1.3E-05 2.8E-10 92.5 19.8 173 153-347 16-216 (363)
55 PRK12402 replication factor C 98.4 4.3E-06 9.4E-11 96.8 15.6 197 152-349 14-224 (337)
56 PRK14960 DNA polymerase III su 98.4 7E-06 1.5E-10 97.0 16.5 178 152-347 14-215 (702)
57 PF13173 AAA_14: AAA domain 98.4 8.6E-07 1.9E-11 85.4 7.5 120 174-313 2-127 (128)
58 KOG1259 Nischarin, modulator o 98.4 6E-08 1.3E-12 99.3 -0.6 128 525-659 283-412 (490)
59 PRK04195 replication factor C 98.3 4E-05 8.6E-10 92.2 22.1 251 151-440 12-279 (482)
60 COG4886 Leucine-rich repeat (L 98.3 4.8E-07 1E-11 107.2 5.5 172 551-751 114-288 (394)
61 PF05496 RuvB_N: Holliday junc 98.3 2.7E-06 5.9E-11 86.4 9.7 174 150-352 21-222 (233)
62 PRK12323 DNA polymerase III su 98.3 9.3E-06 2E-10 95.7 15.4 176 152-349 15-223 (700)
63 PRK00440 rfc replication facto 98.3 1.7E-05 3.6E-10 91.1 17.7 179 152-347 16-199 (319)
64 PLN03025 replication factor C 98.3 8.2E-06 1.8E-10 92.6 14.5 179 152-346 12-195 (319)
65 PRK05896 DNA polymerase III su 98.3 3.7E-05 8E-10 91.2 20.2 181 152-354 15-224 (605)
66 PRK05564 DNA polymerase III su 98.3 1.9E-05 4.1E-10 89.5 17.2 176 153-350 4-189 (313)
67 COG4886 Leucine-rich repeat (L 98.3 5.7E-07 1.2E-11 106.6 4.7 173 524-714 114-288 (394)
68 PRK14957 DNA polymerase III su 98.3 1.9E-05 4.1E-10 93.7 16.9 186 152-355 15-225 (546)
69 cd00009 AAA The AAA+ (ATPases 98.3 5.5E-06 1.2E-10 83.0 11.0 123 156-292 1-131 (151)
70 PRK14963 DNA polymerase III su 98.2 2.5E-05 5.5E-10 92.7 17.7 182 152-355 13-222 (504)
71 KOG2227 Pre-initiation complex 98.2 0.00011 2.4E-09 81.6 20.8 204 150-353 147-374 (529)
72 PRK14956 DNA polymerase III su 98.2 1.6E-05 3.4E-10 91.6 15.1 196 152-351 17-223 (484)
73 PRK14962 DNA polymerase III su 98.2 2.5E-05 5.5E-10 91.9 17.2 198 152-367 13-239 (472)
74 PRK06645 DNA polymerase III su 98.2 4.5E-05 9.8E-10 90.1 18.8 178 152-351 20-230 (507)
75 TIGR02397 dnaX_nterm DNA polym 98.2 0.00011 2.4E-09 85.7 22.2 181 152-351 13-218 (355)
76 KOG3207 Beta-tubulin folding c 98.2 4.2E-07 9E-12 98.9 1.1 134 550-694 143-284 (505)
77 KOG3207 Beta-tubulin folding c 98.2 3.6E-07 7.9E-12 99.3 0.6 106 550-656 118-232 (505)
78 PRK08727 hypothetical protein; 98.2 3E-05 6.6E-10 83.2 15.0 168 153-348 19-201 (233)
79 TIGR01242 26Sp45 26S proteasom 98.2 3.5E-05 7.6E-10 89.3 16.6 177 147-345 116-328 (364)
80 PRK07471 DNA polymerase III su 98.2 4.3E-05 9.4E-10 87.0 16.9 198 149-351 15-238 (365)
81 PF13191 AAA_16: AAA ATPase do 98.2 4.8E-06 1E-10 87.0 8.6 51 154-204 1-54 (185)
82 PRK07940 DNA polymerase III su 98.2 5.1E-05 1.1E-09 87.1 17.4 172 153-351 5-213 (394)
83 PRK14964 DNA polymerase III su 98.2 4.8E-05 1E-09 89.0 17.2 177 152-346 12-212 (491)
84 PRK09112 DNA polymerase III su 98.2 6.1E-05 1.3E-09 85.3 17.4 197 149-351 19-240 (351)
85 PRK08084 DNA replication initi 98.1 3.2E-05 6.8E-10 83.2 14.3 164 160-351 31-209 (235)
86 PRK08691 DNA polymerase III su 98.1 2.9E-05 6.2E-10 93.0 14.7 178 152-351 15-221 (709)
87 PRK14958 DNA polymerase III su 98.1 4.1E-05 8.8E-10 91.3 15.9 177 152-346 15-215 (509)
88 TIGR00678 holB DNA polymerase 98.1 6.7E-05 1.5E-09 78.1 15.7 159 164-347 3-187 (188)
89 PRK09376 rho transcription ter 98.1 9.8E-06 2.1E-10 89.7 9.6 101 164-265 158-268 (416)
90 PRK14959 DNA polymerase III su 98.1 0.00017 3.7E-09 86.2 20.4 186 153-356 16-226 (624)
91 cd01128 rho_factor Transcripti 98.1 1.1E-05 2.4E-10 86.2 9.5 93 172-265 14-115 (249)
92 PRK14969 DNA polymerase III su 98.1 9.8E-05 2.1E-09 88.8 18.5 185 153-355 16-225 (527)
93 PRK07994 DNA polymerase III su 98.1 4.9E-05 1.1E-09 91.7 15.7 178 152-351 15-221 (647)
94 PRK14951 DNA polymerase III su 98.1 7.9E-05 1.7E-09 89.8 17.2 175 152-348 15-222 (618)
95 PRK13341 recombination factor 98.1 3.7E-05 7.9E-10 95.0 14.7 169 152-346 27-212 (725)
96 KOG2028 ATPase related to the 98.1 6.7E-05 1.5E-09 79.8 14.0 173 153-345 138-330 (554)
97 PF13855 LRR_8: Leucine rich r 98.1 3.4E-06 7.4E-11 68.8 3.6 54 555-608 3-59 (61)
98 PF13855 LRR_8: Leucine rich r 98.0 3.6E-06 7.8E-11 68.7 3.4 60 526-588 1-61 (61)
99 PRK09087 hypothetical protein; 98.0 6.3E-05 1.4E-09 79.9 13.7 142 173-351 43-195 (226)
100 TIGR02903 spore_lon_C ATP-depe 98.0 8.4E-05 1.8E-09 91.2 16.2 200 152-353 153-397 (615)
101 PF00308 Bac_DnaA: Bacterial d 98.0 6.4E-05 1.4E-09 79.6 13.3 160 174-350 34-207 (219)
102 PRK09111 DNA polymerase III su 98.0 0.00011 2.4E-09 88.9 16.8 195 151-350 22-232 (598)
103 PRK14955 DNA polymerase III su 98.0 8.6E-05 1.9E-09 86.7 15.0 200 152-352 15-230 (397)
104 PRK03992 proteasome-activating 98.0 0.00012 2.5E-09 85.2 15.6 175 148-344 126-336 (389)
105 KOG2120 SCF ubiquitin ligase, 97.9 7.4E-07 1.6E-11 91.7 -2.7 65 594-658 206-272 (419)
106 PRK14952 DNA polymerase III su 97.9 0.00026 5.6E-09 85.2 18.2 183 152-356 12-225 (584)
107 PRK14953 DNA polymerase III su 97.9 0.00084 1.8E-08 79.7 22.4 177 152-350 15-219 (486)
108 PF14516 AAA_35: AAA-like doma 97.9 0.0007 1.5E-08 76.9 20.8 200 149-357 7-245 (331)
109 PRK07133 DNA polymerase III su 97.9 0.00023 5.1E-09 86.4 17.5 179 152-352 17-221 (725)
110 COG2255 RuvB Holliday junction 97.9 0.00069 1.5E-08 70.5 18.2 174 151-353 24-225 (332)
111 PLN03150 hypothetical protein; 97.9 1.8E-05 4E-10 98.0 8.4 102 554-656 419-525 (623)
112 PRK08903 DnaA regulatory inact 97.9 0.00011 2.5E-09 79.1 13.6 171 153-355 18-203 (227)
113 PF05621 TniB: Bacterial TniB 97.9 0.00035 7.6E-09 75.0 16.4 190 161-351 45-261 (302)
114 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 59.5 4.0 42 553-594 1-42 (44)
115 PRK14954 DNA polymerase III su 97.9 0.00024 5.2E-09 86.1 17.0 200 152-352 15-230 (620)
116 KOG0531 Protein phosphatase 1, 97.9 2.4E-06 5.3E-11 101.0 -0.2 106 550-658 92-198 (414)
117 PRK08451 DNA polymerase III su 97.9 0.00034 7.4E-09 82.8 17.5 181 152-350 13-217 (535)
118 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.6E-09 93.0 14.8 181 151-345 185-390 (852)
119 PRK14970 DNA polymerase III su 97.9 0.00033 7.1E-09 81.7 17.4 185 152-354 16-213 (367)
120 PRK05642 DNA replication initi 97.9 0.00024 5.1E-09 76.3 14.6 150 175-352 46-209 (234)
121 TIGR02639 ClpA ATP-dependent C 97.9 0.00019 4.1E-09 90.9 16.1 158 151-321 180-358 (731)
122 KOG0531 Protein phosphatase 1, 97.9 2.7E-06 6E-11 100.6 -0.3 169 522-711 91-263 (414)
123 PRK07764 DNA polymerase III su 97.9 0.00028 6E-09 88.5 17.2 184 153-354 15-225 (824)
124 PRK14087 dnaA chromosomal repl 97.9 0.0002 4.3E-09 84.5 14.9 164 175-352 142-320 (450)
125 PRK14971 DNA polymerase III su 97.9 0.00045 9.7E-09 84.4 18.3 181 152-351 16-223 (614)
126 PRK14950 DNA polymerase III su 97.8 0.00049 1.1E-08 84.5 18.7 192 152-350 15-220 (585)
127 TIGR02881 spore_V_K stage V sp 97.8 0.00014 3E-09 80.1 12.4 154 153-322 6-192 (261)
128 PRK06305 DNA polymerase III su 97.8 0.0004 8.7E-09 81.9 16.9 183 152-353 16-225 (451)
129 PRK07399 DNA polymerase III su 97.8 0.0014 2.9E-08 73.4 20.1 195 153-351 4-221 (314)
130 TIGR00767 rho transcription te 97.8 8.6E-05 1.9E-09 83.0 10.4 93 172-265 166-267 (415)
131 PHA02544 44 clamp loader, smal 97.8 0.00022 4.8E-09 81.5 14.1 146 151-319 19-171 (316)
132 PLN03150 hypothetical protein; 97.8 4.3E-05 9.3E-10 94.7 8.8 106 527-635 419-529 (623)
133 PRK15386 type III secretion pr 97.8 4.5E-05 9.7E-10 85.7 7.9 57 766-844 51-108 (426)
134 KOG2120 SCF ubiquitin ligase, 97.8 2.2E-06 4.8E-11 88.3 -2.2 167 1052-1271 207-376 (419)
135 KOG0989 Replication factor C, 97.8 0.00012 2.6E-09 76.9 9.8 181 152-344 35-223 (346)
136 PRK14948 DNA polymerase III su 97.8 0.00081 1.7E-08 82.2 18.7 192 152-349 15-220 (620)
137 TIGR03689 pup_AAA proteasome A 97.8 0.00043 9.2E-09 81.5 15.6 163 148-323 177-380 (512)
138 CHL00095 clpC Clp protease ATP 97.8 0.00023 4.9E-09 91.3 14.5 157 152-321 178-354 (821)
139 KOG2543 Origin recognition com 97.8 0.00087 1.9E-08 72.7 16.2 163 153-321 6-193 (438)
140 COG1222 RPT1 ATP-dependent 26S 97.7 0.0016 3.5E-08 70.2 17.6 201 146-370 144-392 (406)
141 CHL00181 cbbX CbbX; Provisiona 97.7 0.001 2.2E-08 73.5 17.1 132 175-322 60-210 (287)
142 KOG1859 Leucine-rich repeat pr 97.7 8.9E-07 1.9E-11 101.8 -7.7 128 554-695 165-293 (1096)
143 PRK06647 DNA polymerase III su 97.7 0.0011 2.4E-08 80.1 17.8 177 152-351 15-221 (563)
144 PRK14965 DNA polymerase III su 97.7 0.0011 2.4E-08 80.9 17.8 182 152-355 15-225 (576)
145 TIGR02880 cbbX_cfxQ probable R 97.6 0.00096 2.1E-08 73.8 15.2 131 176-322 60-209 (284)
146 PTZ00361 26 proteosome regulat 97.6 0.00056 1.2E-08 79.4 13.8 156 148-323 178-369 (438)
147 PTZ00454 26S protease regulato 97.6 0.00056 1.2E-08 78.9 13.6 176 148-345 140-351 (398)
148 PRK05563 DNA polymerase III su 97.6 0.0016 3.4E-08 79.1 18.0 187 152-346 15-215 (559)
149 PRK15386 type III secretion pr 97.6 0.00012 2.5E-09 82.5 7.4 38 1168-1209 73-110 (426)
150 TIGR00362 DnaA chromosomal rep 97.6 0.0019 4.1E-08 76.3 18.1 179 175-370 137-337 (405)
151 PRK14088 dnaA chromosomal repl 97.6 0.0011 2.3E-08 78.3 15.3 180 175-370 131-332 (440)
152 PF12799 LRR_4: Leucine Rich r 97.6 6.8E-05 1.5E-09 55.6 3.2 38 599-637 2-39 (44)
153 PRK00149 dnaA chromosomal repl 97.6 0.0035 7.5E-08 75.0 19.5 179 175-370 149-349 (450)
154 PF05673 DUF815: Protein of un 97.5 0.0046 9.9E-08 64.4 17.2 121 149-295 23-155 (249)
155 PRK11331 5-methylcytosine-spec 97.5 0.00025 5.4E-09 80.9 8.7 108 153-265 175-284 (459)
156 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0013 2.7E-08 84.8 16.2 156 152-321 172-349 (852)
157 PRK10865 protein disaggregatio 97.5 0.00072 1.6E-08 86.5 13.9 157 151-321 176-354 (857)
158 KOG1947 Leucine rich repeat pr 97.5 5.1E-06 1.1E-10 102.1 -5.6 198 1053-1302 241-443 (482)
159 PRK11034 clpA ATP-dependent Cl 97.5 0.00035 7.6E-09 87.0 10.4 157 152-321 185-362 (758)
160 PRK05707 DNA polymerase III su 97.5 0.0015 3.3E-08 73.5 14.3 152 174-351 22-203 (328)
161 PRK14086 dnaA chromosomal repl 97.5 0.00093 2E-08 79.6 13.2 154 175-345 315-482 (617)
162 CHL00176 ftsH cell division pr 97.5 0.0021 4.5E-08 78.8 16.6 170 153-344 183-387 (638)
163 KOG1909 Ran GTPase-activating 97.5 2.9E-05 6.3E-10 82.7 0.3 15 617-631 116-130 (382)
164 COG3267 ExeA Type II secretory 97.5 0.0065 1.4E-07 62.9 17.0 178 171-353 48-247 (269)
165 PRK12422 chromosomal replicati 97.5 0.0024 5.2E-08 75.1 16.0 151 175-344 142-306 (445)
166 TIGR01241 FtsH_fam ATP-depende 97.4 0.0034 7.4E-08 76.0 17.7 201 149-371 51-296 (495)
167 KOG2004 Mitochondrial ATP-depe 97.4 0.0059 1.3E-07 71.7 18.1 156 152-321 410-596 (906)
168 PRK10536 hypothetical protein; 97.4 0.0015 3.2E-08 68.9 12.2 57 151-209 53-109 (262)
169 PF00004 AAA: ATPase family as 97.4 0.0004 8.7E-09 67.6 7.8 69 177-265 1-70 (132)
170 KOG1947 Leucine rich repeat pr 97.3 1E-05 2.2E-10 99.4 -5.8 34 1081-1114 295-329 (482)
171 PF10443 RNA12: RNA12 protein; 97.3 0.0094 2E-07 67.2 17.8 193 158-360 1-288 (431)
172 smart00382 AAA ATPases associa 97.3 0.0006 1.3E-08 67.6 8.0 91 174-267 2-92 (148)
173 KOG1859 Leucine-rich repeat pr 97.3 2.7E-05 5.9E-10 90.0 -2.0 155 545-717 102-293 (1096)
174 PRK06620 hypothetical protein; 97.3 0.0023 5E-08 67.4 12.4 131 175-346 45-184 (214)
175 TIGR00602 rad24 checkpoint pro 97.3 0.00092 2E-08 81.0 10.4 51 149-199 80-135 (637)
176 COG1373 Predicted ATPase (AAA+ 97.3 0.0022 4.7E-08 74.5 13.2 164 157-350 21-191 (398)
177 KOG3665 ZYG-1-like serine/thre 97.3 0.00019 4E-09 88.5 4.5 87 544-630 139-229 (699)
178 COG1223 Predicted ATPase (AAA+ 97.3 0.0025 5.3E-08 65.2 11.4 172 152-345 120-319 (368)
179 COG0466 Lon ATP-dependent Lon 97.3 0.0021 4.6E-08 75.8 12.5 157 153-321 323-508 (782)
180 KOG3665 ZYG-1-like serine/thre 97.3 0.00017 3.7E-09 88.8 4.0 106 523-631 145-260 (699)
181 COG0593 DnaA ATPase involved i 97.3 0.0071 1.5E-07 68.6 16.3 185 173-374 112-317 (408)
182 PRK06090 DNA polymerase III su 97.2 0.026 5.7E-07 62.8 19.7 160 161-351 11-201 (319)
183 TIGR00763 lon ATP-dependent pr 97.2 0.0034 7.4E-08 80.1 14.3 157 153-321 320-505 (775)
184 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0046 1E-07 73.1 14.0 173 153-345 228-429 (489)
185 PRK08058 DNA polymerase III su 97.1 0.0075 1.6E-07 68.5 15.0 146 154-320 6-181 (329)
186 KOG1514 Origin recognition com 97.1 0.013 2.7E-07 69.2 16.4 200 152-355 395-625 (767)
187 KOG0733 Nuclear AAA ATPase (VC 97.1 0.013 2.8E-07 67.5 16.1 183 152-356 189-411 (802)
188 PRK08769 DNA polymerase III su 97.1 0.0094 2E-07 66.4 14.9 173 160-351 11-208 (319)
189 KOG0741 AAA+-type ATPase [Post 97.1 0.0095 2.1E-07 67.3 14.1 147 174-341 538-704 (744)
190 PRK12608 transcription termina 97.0 0.005 1.1E-07 68.8 11.9 102 163-265 121-232 (380)
191 COG0542 clpA ATP-binding subun 97.0 0.002 4.4E-08 78.3 9.5 155 152-321 169-346 (786)
192 KOG2982 Uncharacterized conser 97.0 0.00026 5.6E-09 73.6 1.6 82 550-631 68-156 (418)
193 KOG2228 Origin recognition com 97.0 0.0084 1.8E-07 64.1 12.6 166 154-321 25-219 (408)
194 PRK08116 hypothetical protein; 97.0 0.0034 7.3E-08 68.7 10.2 102 175-291 115-221 (268)
195 KOG0739 AAA+-type ATPase [Post 97.0 0.0084 1.8E-07 62.6 11.9 171 153-345 133-335 (439)
196 PRK06871 DNA polymerase III su 97.0 0.025 5.5E-07 63.1 16.8 174 161-348 10-200 (325)
197 PF13177 DNA_pol3_delta2: DNA 97.0 0.0074 1.6E-07 60.6 11.4 135 157-308 1-161 (162)
198 KOG1644 U2-associated snRNP A' 97.0 0.0016 3.4E-08 64.4 6.2 82 600-693 44-125 (233)
199 KOG1909 Ran GTPase-activating 96.9 0.00014 3E-09 77.6 -1.2 242 524-805 28-310 (382)
200 COG0542 clpA ATP-binding subun 96.9 0.018 4E-07 70.3 16.3 106 153-265 491-605 (786)
201 KOG0991 Replication factor C, 96.9 0.0022 4.7E-08 64.4 7.0 102 150-265 24-125 (333)
202 COG2812 DnaX DNA polymerase II 96.9 0.0052 1.1E-07 71.9 11.4 185 153-345 16-214 (515)
203 KOG0733 Nuclear AAA ATPase (VC 96.9 0.013 2.8E-07 67.6 13.8 129 174-322 545-693 (802)
204 KOG2982 Uncharacterized conser 96.9 0.00046 9.9E-09 71.8 1.9 172 1052-1235 94-265 (418)
205 TIGR02640 gas_vesic_GvpN gas v 96.9 0.019 4.1E-07 63.0 14.7 54 162-222 11-64 (262)
206 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0067 1.4E-07 77.5 12.6 106 153-265 566-680 (852)
207 KOG0727 26S proteasome regulat 96.9 0.33 7.1E-06 49.7 21.5 150 152-321 154-339 (408)
208 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3E-07 74.5 15.3 172 152-345 452-657 (733)
209 PRK07993 DNA polymerase III su 96.8 0.043 9.3E-07 62.1 17.3 164 161-349 10-202 (334)
210 PRK08181 transposase; Validate 96.8 0.0024 5.3E-08 69.3 7.0 109 163-291 97-209 (269)
211 KOG1644 U2-associated snRNP A' 96.8 0.003 6.4E-08 62.5 6.5 83 549-631 60-150 (233)
212 KOG0731 AAA+-type ATPase conta 96.8 0.031 6.8E-07 67.8 16.2 176 152-348 310-521 (774)
213 KOG4579 Leucine-rich repeat (L 96.8 0.00025 5.3E-09 65.0 -1.0 90 550-640 50-141 (177)
214 PRK08118 topology modulation p 96.8 0.0009 2E-08 67.5 3.0 35 175-209 2-37 (167)
215 TIGR02639 ClpA ATP-dependent C 96.7 0.0088 1.9E-07 76.0 12.4 103 153-265 454-565 (731)
216 PRK10787 DNA-binding ATP-depen 96.7 0.0099 2.1E-07 75.0 12.4 157 153-321 322-506 (784)
217 PRK06964 DNA polymerase III su 96.7 0.064 1.4E-06 60.5 17.2 102 241-351 116-225 (342)
218 PF00448 SRP54: SRP54-type pro 96.7 0.011 2.5E-07 61.1 10.4 88 174-263 1-93 (196)
219 PTZ00494 tuzin-like protein; P 96.6 0.39 8.4E-06 54.1 22.0 164 149-321 367-544 (664)
220 PF01695 IstB_IS21: IstB-like 96.6 0.002 4.3E-08 65.7 4.5 75 173-265 46-120 (178)
221 TIGR01243 CDC48 AAA family ATP 96.6 0.02 4.4E-07 73.0 14.4 174 151-346 176-382 (733)
222 PRK08939 primosomal protein Dn 96.6 0.0068 1.5E-07 67.5 8.6 116 157-290 135-260 (306)
223 PF02562 PhoH: PhoH-like prote 96.6 0.008 1.7E-07 61.8 8.4 127 158-293 5-158 (205)
224 PF04665 Pox_A32: Poxvirus A32 96.6 0.0056 1.2E-07 64.4 7.3 36 175-212 14-49 (241)
225 PLN00020 ribulose bisphosphate 96.5 0.028 6E-07 62.2 12.6 151 172-346 146-333 (413)
226 KOG0730 AAA+-type ATPase [Post 96.5 0.042 9E-07 64.6 14.7 167 157-345 438-637 (693)
227 TIGR02237 recomb_radB DNA repa 96.5 0.016 3.4E-07 61.6 10.8 48 173-223 11-58 (209)
228 PHA00729 NTP-binding motif con 96.5 0.015 3.2E-07 60.6 9.8 36 164-199 7-42 (226)
229 PF07693 KAP_NTPase: KAP famil 96.5 0.17 3.7E-06 58.1 19.8 44 158-201 1-47 (325)
230 PRK07261 topology modulation p 96.5 0.0085 1.8E-07 60.9 7.9 34 176-209 2-36 (171)
231 KOG2123 Uncharacterized conser 96.5 0.00025 5.4E-09 72.9 -3.3 80 575-656 18-98 (388)
232 PRK06526 transposase; Provisio 96.4 0.0025 5.4E-08 68.9 3.8 75 173-265 97-171 (254)
233 KOG0734 AAA+-type ATPase conta 96.4 0.0091 2E-07 67.5 7.7 87 159-265 313-408 (752)
234 PRK10865 protein disaggregatio 96.3 0.028 6E-07 72.3 13.2 106 153-265 568-682 (857)
235 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0061 1.3E-07 67.9 6.1 47 154-200 52-104 (361)
236 KOG0735 AAA+-type ATPase [Post 96.3 0.028 6.1E-07 66.1 11.4 153 173-344 430-608 (952)
237 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.019 4E-07 62.4 9.9 49 173-221 18-70 (235)
238 KOG4579 Leucine-rich repeat (L 96.3 0.00091 2E-08 61.4 -0.4 86 528-616 55-141 (177)
239 PRK12377 putative replication 96.3 0.021 4.5E-07 61.3 9.7 76 173-265 100-175 (248)
240 PRK14722 flhF flagellar biosyn 96.2 0.02 4.4E-07 64.9 9.8 91 173-265 136-227 (374)
241 TIGR02012 tigrfam_recA protein 96.2 0.017 3.7E-07 64.0 8.9 86 173-265 54-145 (321)
242 PRK09183 transposase/IS protei 96.2 0.0088 1.9E-07 65.2 6.6 75 174-265 102-176 (259)
243 COG0470 HolB ATPase involved i 96.2 0.025 5.4E-07 65.1 10.7 140 154-309 2-169 (325)
244 TIGR03346 chaperone_ClpB ATP-d 96.2 0.014 3.1E-07 75.3 9.3 106 153-265 565-679 (852)
245 TIGR01650 PD_CobS cobaltochela 96.1 0.064 1.4E-06 59.3 12.8 61 154-221 46-106 (327)
246 KOG1969 DNA replication checkp 96.1 0.014 3.1E-07 68.8 7.9 74 173-265 325-399 (877)
247 KOG0728 26S proteasome regulat 96.1 0.22 4.8E-06 50.9 15.1 147 155-321 149-331 (404)
248 TIGR03499 FlhF flagellar biosy 96.1 0.029 6.2E-07 62.2 10.1 88 173-262 193-281 (282)
249 PRK11034 clpA ATP-dependent Cl 96.1 0.013 2.9E-07 73.2 8.1 102 154-265 459-569 (758)
250 PRK07952 DNA replication prote 96.1 0.056 1.2E-06 57.9 11.7 89 161-265 84-174 (244)
251 KOG0736 Peroxisome assembly fa 96.0 0.13 2.8E-06 61.5 15.0 92 154-265 673-776 (953)
252 cd00983 recA RecA is a bacter 96.0 0.023 4.9E-07 63.1 8.6 85 173-264 54-144 (325)
253 CHL00095 clpC Clp protease ATP 96.0 0.021 4.5E-07 73.6 9.7 132 153-291 509-662 (821)
254 KOG0735 AAA+-type ATPase [Post 96.0 0.12 2.6E-06 61.1 14.6 172 154-347 668-872 (952)
255 PF13207 AAA_17: AAA domain; P 96.0 0.0064 1.4E-07 58.0 3.8 24 176-199 1-24 (121)
256 PRK09354 recA recombinase A; P 96.0 0.028 6E-07 62.9 9.2 86 173-265 59-150 (349)
257 TIGR02902 spore_lonB ATP-depen 96.0 0.021 4.6E-07 69.2 9.0 46 153-198 65-110 (531)
258 KOG2123 Uncharacterized conser 96.0 0.00091 2E-08 68.9 -2.2 61 525-591 18-78 (388)
259 KOG0738 AAA+-type ATPase [Post 95.9 0.8 1.7E-05 50.6 19.4 47 154-200 213-271 (491)
260 PRK06835 DNA replication prote 95.9 0.018 3.9E-07 64.7 7.5 103 173-291 182-289 (329)
261 COG1875 NYN ribonuclease and A 95.9 0.019 4.2E-07 62.3 7.3 139 154-293 225-390 (436)
262 PRK06696 uridine kinase; Valid 95.9 0.014 2.9E-07 62.6 6.2 44 157-200 2-48 (223)
263 PRK04132 replication factor C 95.9 0.14 3E-06 64.4 15.7 156 179-351 569-732 (846)
264 KOG0744 AAA+-type ATPase [Post 95.9 0.012 2.7E-07 62.4 5.5 28 174-201 177-204 (423)
265 COG2884 FtsE Predicted ATPase 95.9 0.034 7.3E-07 54.8 8.0 28 173-200 27-54 (223)
266 COG1484 DnaC DNA replication p 95.9 0.035 7.7E-07 60.1 9.3 84 163-265 96-179 (254)
267 PRK12727 flagellar biosynthesi 95.9 0.049 1.1E-06 63.8 10.8 90 173-264 349-439 (559)
268 cd01133 F1-ATPase_beta F1 ATP 95.9 0.054 1.2E-06 58.4 10.4 93 172-265 67-175 (274)
269 COG0464 SpoVK ATPases of the A 95.8 0.11 2.4E-06 63.3 14.7 151 173-343 275-445 (494)
270 cd01393 recA_like RecA is a b 95.8 0.046 9.9E-07 58.9 10.1 50 173-222 18-71 (226)
271 KOG0743 AAA+-type ATPase [Post 95.8 0.59 1.3E-05 53.1 18.5 152 175-358 236-417 (457)
272 TIGR02238 recomb_DMC1 meiotic 95.8 0.053 1.2E-06 60.6 10.6 59 173-232 95-157 (313)
273 COG5238 RNA1 Ran GTPase-activa 95.8 0.0039 8.4E-08 64.2 1.4 137 550-694 27-198 (388)
274 PRK08699 DNA polymerase III su 95.8 0.12 2.5E-06 58.4 13.2 153 174-347 21-202 (325)
275 PRK09361 radB DNA repair and r 95.7 0.063 1.4E-06 57.7 10.3 46 173-221 22-67 (225)
276 PRK09270 nucleoside triphospha 95.7 0.069 1.5E-06 57.4 10.5 30 172-201 31-60 (229)
277 KOG0729 26S proteasome regulat 95.6 0.11 2.4E-06 53.5 10.8 95 151-265 175-282 (435)
278 COG1618 Predicted nucleotide k 95.6 0.017 3.6E-07 55.2 4.7 28 175-202 6-33 (179)
279 PRK10733 hflB ATP-dependent me 95.6 0.06 1.3E-06 67.1 11.1 170 153-344 152-356 (644)
280 PRK11889 flhF flagellar biosyn 95.6 0.12 2.5E-06 58.3 11.9 90 173-264 240-331 (436)
281 cd01120 RecA-like_NTPases RecA 95.6 0.073 1.6E-06 53.9 10.0 40 176-217 1-40 (165)
282 PRK04296 thymidine kinase; Pro 95.5 0.014 3.1E-07 60.4 4.6 110 175-292 3-117 (190)
283 COG0488 Uup ATPase components 95.5 0.12 2.6E-06 62.0 12.8 128 173-306 347-510 (530)
284 PLN03187 meiotic recombination 95.5 0.087 1.9E-06 59.4 11.0 59 173-232 125-187 (344)
285 COG2607 Predicted ATPase (AAA+ 95.5 0.19 4.1E-06 51.6 11.9 117 149-291 56-183 (287)
286 PF08423 Rad51: Rad51; InterP 95.5 0.078 1.7E-06 57.7 10.2 90 174-264 38-144 (256)
287 PRK06921 hypothetical protein; 95.5 0.072 1.6E-06 58.3 9.8 71 173-262 116-186 (266)
288 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.1 2.2E-06 56.5 10.9 49 173-225 20-68 (237)
289 PRK12723 flagellar biosynthesi 95.4 0.072 1.6E-06 61.1 10.0 91 173-265 173-266 (388)
290 PRK05541 adenylylsulfate kinas 95.4 0.05 1.1E-06 55.9 8.1 37 173-211 6-42 (176)
291 PRK08533 flagellar accessory p 95.4 0.11 2.3E-06 55.8 10.7 53 173-230 23-75 (230)
292 COG1419 FlhF Flagellar GTP-bin 95.4 0.15 3.2E-06 57.4 11.8 100 162-264 187-292 (407)
293 KOG0652 26S proteasome regulat 95.4 0.21 4.6E-06 51.3 11.8 191 146-356 164-392 (424)
294 KOG2739 Leucine-rich acidic nu 95.3 0.0084 1.8E-07 62.3 2.0 83 573-658 40-128 (260)
295 PRK04301 radA DNA repair and r 95.3 0.11 2.3E-06 59.0 11.2 57 173-230 101-161 (317)
296 PRK15455 PrkA family serine pr 95.3 0.024 5.1E-07 66.6 5.7 47 154-200 77-129 (644)
297 PRK12726 flagellar biosynthesi 95.3 0.11 2.4E-06 58.3 10.5 90 173-264 205-296 (407)
298 COG4088 Predicted nucleotide k 95.3 0.021 4.6E-07 56.6 4.4 27 175-201 2-28 (261)
299 COG1224 TIP49 DNA helicase TIP 95.3 0.075 1.6E-06 57.6 8.8 80 151-233 37-126 (450)
300 PF00154 RecA: recA bacterial 95.3 0.14 3.1E-06 56.6 11.3 86 173-265 52-143 (322)
301 PF03308 ArgK: ArgK protein; 95.2 0.046 9.9E-07 57.5 6.9 61 161-221 14-76 (266)
302 TIGR02239 recomb_RAD51 DNA rep 95.2 0.091 2E-06 59.0 9.9 58 173-231 95-156 (316)
303 COG1066 Sms Predicted ATP-depe 95.2 0.084 1.8E-06 58.7 9.2 97 163-265 80-180 (456)
304 COG1703 ArgK Putative periplas 95.2 0.041 8.9E-07 58.5 6.6 61 163-223 38-100 (323)
305 KOG2035 Replication factor C, 95.2 0.48 1E-05 49.8 13.8 227 154-396 14-282 (351)
306 KOG0737 AAA+-type ATPase [Post 95.2 0.22 4.7E-06 54.7 12.0 164 155-345 94-296 (386)
307 PTZ00035 Rad51 protein; Provis 95.1 0.14 3.1E-06 58.0 11.3 58 173-231 117-178 (337)
308 PLN03186 DNA repair protein RA 95.1 0.098 2.1E-06 59.1 9.8 58 173-231 122-183 (342)
309 PRK12724 flagellar biosynthesi 95.1 0.081 1.8E-06 60.4 9.1 85 174-262 223-308 (432)
310 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.12 2.5E-06 68.7 11.5 28 173-200 1629-1656(2281)
311 PRK00771 signal recognition pa 95.1 0.16 3.5E-06 59.3 11.7 87 173-263 94-185 (437)
312 PRK07132 DNA polymerase III su 95.1 0.5 1.1E-05 52.4 15.0 159 162-343 5-177 (299)
313 PRK05703 flhF flagellar biosyn 95.1 0.1 2.2E-06 61.1 10.1 88 174-263 221-309 (424)
314 cd01394 radB RadB. The archaea 95.1 0.14 3E-06 54.8 10.4 43 173-217 18-60 (218)
315 cd03115 SRP The signal recogni 95.0 0.11 2.3E-06 53.3 9.1 87 176-264 2-93 (173)
316 TIGR00554 panK_bact pantothena 95.0 0.1 2.2E-06 57.3 9.3 45 172-216 60-104 (290)
317 TIGR02858 spore_III_AA stage I 95.0 0.12 2.6E-06 56.3 9.8 118 171-295 108-233 (270)
318 PF07728 AAA_5: AAA domain (dy 94.9 0.049 1.1E-06 53.3 6.1 76 177-265 2-77 (139)
319 cd01121 Sms Sms (bacterial rad 94.9 0.11 2.4E-06 59.5 9.6 86 174-264 82-169 (372)
320 COG1102 Cmk Cytidylate kinase 94.9 0.07 1.5E-06 51.1 6.5 45 176-233 2-46 (179)
321 PRK10867 signal recognition pa 94.9 0.15 3.3E-06 59.4 10.7 29 173-201 99-127 (433)
322 PRK06547 hypothetical protein; 94.9 0.042 9.1E-07 55.6 5.4 35 165-199 6-40 (172)
323 PRK05439 pantothenate kinase; 94.8 0.17 3.7E-06 56.0 10.5 81 172-254 84-166 (311)
324 PHA02244 ATPase-like protein 94.8 0.13 2.8E-06 57.6 9.4 36 162-199 109-144 (383)
325 TIGR00959 ffh signal recogniti 94.8 0.18 3.9E-06 58.8 11.0 89 173-263 98-192 (428)
326 PF13481 AAA_25: AAA domain; P 94.8 0.14 3.1E-06 53.5 9.5 51 174-226 32-90 (193)
327 cd02025 PanK Pantothenate kina 94.8 0.13 2.8E-06 54.6 9.1 41 176-216 1-41 (220)
328 TIGR02236 recomb_radA DNA repa 94.7 0.2 4.3E-06 56.8 11.2 57 173-230 94-154 (310)
329 TIGR00064 ftsY signal recognit 94.7 0.23 4.9E-06 54.6 11.0 90 173-265 71-166 (272)
330 PRK04328 hypothetical protein; 94.7 0.15 3.2E-06 55.5 9.6 53 173-230 22-74 (249)
331 PRK14974 cell division protein 94.7 0.35 7.5E-06 54.5 12.5 90 173-265 139-234 (336)
332 PF00006 ATP-synt_ab: ATP synt 94.7 0.13 2.9E-06 53.8 8.6 87 173-263 14-115 (215)
333 KOG1532 GTPase XAB1, interacts 94.7 0.19 4.2E-06 52.3 9.4 61 173-233 18-87 (366)
334 KOG2739 Leucine-rich acidic nu 94.6 0.019 4E-07 59.8 2.2 62 550-611 62-129 (260)
335 cd00561 CobA_CobO_BtuR ATP:cor 94.6 0.17 3.8E-06 49.8 8.8 115 175-292 3-139 (159)
336 PRK11608 pspF phage shock prot 94.6 0.28 6.2E-06 55.7 12.0 45 153-197 6-52 (326)
337 PRK13531 regulatory ATPase Rav 94.6 0.047 1E-06 63.4 5.6 51 153-205 20-70 (498)
338 PF13245 AAA_19: Part of AAA d 94.6 0.1 2.2E-06 44.4 6.2 26 173-198 9-35 (76)
339 cd01125 repA Hexameric Replica 94.6 0.15 3.3E-06 55.3 9.2 141 176-316 3-199 (239)
340 PRK07667 uridine kinase; Provi 94.5 0.067 1.5E-06 55.7 6.1 38 163-200 4-43 (193)
341 cd01135 V_A-ATPase_B V/A-type 94.5 0.22 4.7E-06 53.7 9.8 94 172-265 67-178 (276)
342 cd01124 KaiC KaiC is a circadi 94.5 0.16 3.4E-06 52.8 8.9 45 176-224 1-45 (187)
343 COG0194 Gmk Guanylate kinase [ 94.4 0.18 3.8E-06 50.1 8.2 25 174-198 4-28 (191)
344 PRK06067 flagellar accessory p 94.4 0.28 6E-06 53.1 10.8 49 173-225 24-72 (234)
345 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.052 1.1E-06 57.3 5.0 24 174-197 29-52 (213)
346 COG0465 HflB ATP-dependent Zn 94.4 0.23 4.9E-06 59.4 10.6 200 153-374 150-394 (596)
347 PF01583 APS_kinase: Adenylyls 94.4 0.08 1.7E-06 51.9 5.8 36 174-211 2-37 (156)
348 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.11 2.3E-06 53.9 7.2 24 176-199 1-24 (183)
349 TIGR01817 nifA Nif-specific re 94.3 0.24 5.1E-06 61.0 11.4 48 151-198 194-243 (534)
350 COG0468 RecA RecA/RadA recombi 94.3 0.29 6.4E-06 53.1 10.5 88 173-264 59-152 (279)
351 PF06309 Torsin: Torsin; Inte 94.3 0.096 2.1E-06 48.6 5.8 45 154-198 26-77 (127)
352 PRK12597 F0F1 ATP synthase sub 94.3 0.2 4.3E-06 58.6 9.9 92 172-264 141-248 (461)
353 PF13306 LRR_5: Leucine rich r 94.3 0.08 1.7E-06 51.0 5.8 105 544-654 3-111 (129)
354 PF00560 LRR_1: Leucine Rich R 94.3 0.017 3.8E-07 35.4 0.6 22 554-575 1-22 (22)
355 PF08433 KTI12: Chromatin asso 94.3 0.13 2.8E-06 56.1 7.9 26 175-200 2-27 (270)
356 PRK13765 ATP-dependent proteas 94.2 0.081 1.8E-06 64.8 6.8 78 150-231 28-105 (637)
357 PF13238 AAA_18: AAA domain; P 94.2 0.041 8.9E-07 53.1 3.6 22 177-198 1-22 (129)
358 PRK14721 flhF flagellar biosyn 94.2 0.27 6E-06 56.9 10.7 89 173-263 190-279 (420)
359 cd02019 NK Nucleoside/nucleoti 94.2 0.044 9.6E-07 45.7 3.2 23 176-198 1-23 (69)
360 PRK05342 clpX ATP-dependent pr 94.2 0.12 2.6E-06 60.1 7.8 47 153-199 71-133 (412)
361 PF00485 PRK: Phosphoribulokin 94.2 0.046 1E-06 57.1 4.0 26 176-201 1-26 (194)
362 TIGR00390 hslU ATP-dependent p 94.2 0.12 2.6E-06 58.8 7.4 76 153-228 12-103 (441)
363 cd00544 CobU Adenosylcobinamid 94.2 0.18 3.9E-06 50.8 8.0 82 176-263 1-83 (169)
364 cd03228 ABCC_MRP_Like The MRP 94.1 0.14 2.9E-06 52.3 7.3 27 173-199 27-53 (171)
365 cd03247 ABCC_cytochrome_bd The 94.1 0.13 2.7E-06 53.0 7.1 26 173-198 27-52 (178)
366 cd03238 ABC_UvrA The excision 94.1 0.17 3.6E-06 51.5 7.7 24 173-196 20-43 (176)
367 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.26 5.6E-06 54.0 9.8 40 173-214 35-74 (259)
368 TIGR01425 SRP54_euk signal rec 94.1 0.22 4.8E-06 57.7 9.5 38 173-212 99-136 (429)
369 PF00560 LRR_1: Leucine Rich R 94.1 0.019 4.1E-07 35.3 0.5 21 599-619 1-21 (22)
370 PRK05917 DNA polymerase III su 94.1 0.82 1.8E-05 50.1 13.3 126 161-308 5-154 (290)
371 KOG1051 Chaperone HSP104 and r 94.0 0.2 4.3E-06 62.6 9.6 103 154-266 563-673 (898)
372 PRK06995 flhF flagellar biosyn 94.0 0.24 5.3E-06 58.3 9.9 88 174-263 256-344 (484)
373 TIGR00708 cobA cob(I)alamin ad 94.0 0.33 7.1E-06 48.5 9.3 117 174-291 5-140 (173)
374 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.43 9.4E-06 52.9 10.9 91 153-248 61-164 (358)
375 KOG0740 AAA+-type ATPase [Post 93.9 1 2.2E-05 51.6 14.2 73 173-265 185-257 (428)
376 COG0563 Adk Adenylate kinase a 93.9 0.11 2.3E-06 52.8 6.0 24 176-199 2-25 (178)
377 PF07724 AAA_2: AAA domain (Cd 93.9 0.086 1.9E-06 53.3 5.3 43 174-217 3-45 (171)
378 cd01131 PilT Pilus retraction 93.9 0.084 1.8E-06 55.2 5.4 110 175-294 2-112 (198)
379 PTZ00301 uridine kinase; Provi 93.8 0.06 1.3E-06 56.4 4.1 26 174-199 3-28 (210)
380 PF00910 RNA_helicase: RNA hel 93.8 0.047 1E-06 50.4 3.0 25 177-201 1-25 (107)
381 PRK09519 recA DNA recombinatio 93.8 0.24 5.3E-06 61.4 9.8 85 173-264 59-149 (790)
382 cd03216 ABC_Carb_Monos_I This 93.8 0.096 2.1E-06 52.8 5.5 116 173-295 25-146 (163)
383 PF13306 LRR_5: Leucine rich r 93.8 0.11 2.5E-06 49.9 5.8 115 524-648 10-128 (129)
384 cd03214 ABC_Iron-Siderophores_ 93.8 0.25 5.4E-06 50.9 8.6 119 173-295 24-162 (180)
385 COG0541 Ffh Signal recognition 93.8 4 8.7E-05 46.5 18.1 60 173-233 99-158 (451)
386 cd03223 ABCD_peroxisomal_ALDP 93.8 0.22 4.7E-06 50.4 8.0 27 173-199 26-52 (166)
387 KOG3864 Uncharacterized conser 93.8 0.0095 2.1E-07 59.2 -1.8 75 731-807 116-190 (221)
388 TIGR02655 circ_KaiC circadian 93.8 0.37 8.1E-06 58.1 11.2 65 162-231 249-315 (484)
389 PF13671 AAA_33: AAA domain; P 93.7 0.059 1.3E-06 53.1 3.7 24 176-199 1-24 (143)
390 PRK08233 hypothetical protein; 93.7 0.055 1.2E-06 56.0 3.6 26 174-199 3-28 (182)
391 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.7 0.13 2.7E-06 50.6 5.9 104 173-295 25-131 (144)
392 PRK05480 uridine/cytidine kina 93.7 0.066 1.4E-06 56.8 4.1 27 172-198 4-30 (209)
393 KOG3864 Uncharacterized conser 93.7 0.011 2.3E-07 58.8 -1.7 44 1191-1234 123-166 (221)
394 PRK00889 adenylylsulfate kinas 93.7 0.27 5.8E-06 50.4 8.5 28 173-200 3-30 (175)
395 PF10236 DAP3: Mitochondrial r 93.6 3.9 8.5E-05 46.0 18.3 47 302-348 258-306 (309)
396 PF06068 TIP49: TIP49 C-termin 93.6 0.096 2.1E-06 57.9 5.3 53 152-204 23-80 (398)
397 PRK14723 flhF flagellar biosyn 93.6 0.31 6.8E-06 60.3 10.2 87 174-263 185-273 (767)
398 PRK05022 anaerobic nitric oxid 93.6 0.58 1.3E-05 57.0 12.6 62 152-215 186-249 (509)
399 PRK08972 fliI flagellum-specif 93.6 0.23 5E-06 57.3 8.5 90 172-265 160-264 (444)
400 PRK08927 fliI flagellum-specif 93.6 0.31 6.7E-06 56.5 9.5 90 172-265 156-260 (442)
401 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.34 7.3E-06 56.3 9.8 93 172-265 136-244 (449)
402 cd02027 APSK Adenosine 5'-phos 93.6 0.46 1E-05 47.0 9.6 24 176-199 1-24 (149)
403 TIGR00235 udk uridine kinase. 93.5 0.07 1.5E-06 56.4 4.0 28 172-199 4-31 (207)
404 TIGR00150 HI0065_YjeE ATPase, 93.5 0.15 3.3E-06 48.5 5.7 40 161-200 7-48 (133)
405 PRK06762 hypothetical protein; 93.5 0.073 1.6E-06 54.0 3.9 25 174-198 2-26 (166)
406 PRK12678 transcription termina 93.5 0.33 7.1E-06 57.1 9.3 100 165-265 406-515 (672)
407 COG3640 CooC CO dehydrogenase 93.4 0.18 3.9E-06 51.8 6.3 42 176-218 2-43 (255)
408 COG4240 Predicted kinase [Gene 93.4 0.48 1E-05 48.1 9.0 82 171-253 47-133 (300)
409 COG0572 Udk Uridine kinase [Nu 93.3 0.078 1.7E-06 54.5 3.8 29 173-201 7-35 (218)
410 TIGR00382 clpX endopeptidase C 93.3 0.24 5.3E-06 57.3 8.2 47 153-199 77-141 (413)
411 COG1428 Deoxynucleoside kinase 93.3 0.15 3.2E-06 51.7 5.6 26 174-199 4-29 (216)
412 PRK11823 DNA repair protein Ra 93.3 0.21 4.6E-06 59.1 8.0 86 174-264 80-167 (446)
413 PF12775 AAA_7: P-loop contain 93.3 0.051 1.1E-06 59.6 2.6 89 163-265 23-112 (272)
414 PRK05201 hslU ATP-dependent pr 93.3 0.26 5.7E-06 56.2 8.2 77 153-229 15-107 (443)
415 PRK15453 phosphoribulokinase; 93.3 0.48 1E-05 51.1 9.7 28 172-199 3-30 (290)
416 KOG3347 Predicted nucleotide k 93.3 0.078 1.7E-06 49.9 3.3 37 174-217 7-43 (176)
417 KOG0726 26S proteasome regulat 93.2 0.43 9.4E-06 50.2 8.8 98 147-265 179-290 (440)
418 PRK09280 F0F1 ATP synthase sub 93.2 0.48 1E-05 55.3 10.3 93 172-265 142-250 (463)
419 PRK06731 flhF flagellar biosyn 93.2 0.43 9.3E-06 52.0 9.4 91 173-265 74-166 (270)
420 PF03205 MobB: Molybdopterin g 93.2 0.12 2.5E-06 50.3 4.6 39 175-214 1-39 (140)
421 PF06745 KaiC: KaiC; InterPro 93.2 0.24 5.1E-06 53.3 7.5 49 173-224 18-66 (226)
422 PRK06002 fliI flagellum-specif 93.1 0.29 6.2E-06 56.8 8.3 90 173-265 164-266 (450)
423 TIGR01360 aden_kin_iso1 adenyl 93.1 0.086 1.9E-06 54.9 3.9 26 173-198 2-27 (188)
424 TIGR00416 sms DNA repair prote 93.0 0.31 6.7E-06 57.8 8.7 97 163-264 81-181 (454)
425 TIGR03881 KaiC_arch_4 KaiC dom 93.0 0.82 1.8E-05 49.2 11.5 53 173-230 19-71 (229)
426 COG4608 AppF ABC-type oligopep 93.0 0.38 8.3E-06 51.1 8.3 122 172-298 37-177 (268)
427 cd00267 ABC_ATPase ABC (ATP-bi 93.0 0.23 5E-06 49.8 6.7 118 173-296 24-145 (157)
428 PF03215 Rad17: Rad17 cell cyc 93.0 0.15 3.3E-06 61.0 6.1 55 154-212 20-79 (519)
429 COG5635 Predicted NTPase (NACH 93.0 0.24 5.2E-06 64.0 8.4 193 175-372 223-449 (824)
430 PRK09435 membrane ATPase/prote 93.0 0.92 2E-05 51.0 11.8 39 163-201 43-83 (332)
431 PTZ00088 adenylate kinase 1; P 92.9 0.14 3.1E-06 54.4 5.2 24 176-199 8-31 (229)
432 cd03246 ABCC_Protease_Secretio 92.9 0.21 4.5E-06 51.0 6.3 26 173-198 27-52 (173)
433 PRK03839 putative kinase; Prov 92.9 0.089 1.9E-06 54.2 3.6 24 176-199 2-25 (180)
434 TIGR01069 mutS2 MutS2 family p 92.9 0.13 2.8E-06 65.0 5.7 182 173-371 321-521 (771)
435 PRK13949 shikimate kinase; Pro 92.8 0.18 3.8E-06 51.1 5.4 24 176-199 3-26 (169)
436 PTZ00185 ATPase alpha subunit; 92.8 0.74 1.6E-05 53.7 10.8 94 172-265 187-301 (574)
437 TIGR00764 lon_rel lon-related 92.8 0.25 5.5E-06 60.8 7.8 76 152-231 17-92 (608)
438 PRK04040 adenylate kinase; Pro 92.7 0.11 2.4E-06 53.6 3.9 26 174-199 2-27 (188)
439 PRK00625 shikimate kinase; Pro 92.7 0.097 2.1E-06 53.0 3.4 24 176-199 2-25 (173)
440 TIGR00750 lao LAO/AO transport 92.7 0.35 7.6E-06 54.3 8.2 31 171-201 31-61 (300)
441 TIGR01040 V-ATPase_V1_B V-type 92.7 0.43 9.2E-06 55.2 8.8 93 172-264 139-258 (466)
442 COG0714 MoxR-like ATPases [Gen 92.7 0.26 5.6E-06 56.4 7.3 65 154-225 25-89 (329)
443 PRK15429 formate hydrogenlyase 92.7 0.25 5.5E-06 62.7 7.9 60 153-214 376-437 (686)
444 COG0529 CysC Adenylylsulfate k 92.6 0.23 5.1E-06 48.5 5.6 32 170-201 19-50 (197)
445 cd01122 GP4d_helicase GP4d_hel 92.6 0.68 1.5E-05 51.5 10.4 53 173-228 29-81 (271)
446 PHA02774 E1; Provisional 92.6 0.23 5E-06 58.7 6.6 48 161-212 420-468 (613)
447 COG1121 ZnuC ABC-type Mn/Zn tr 92.6 0.33 7.1E-06 51.6 7.1 24 173-196 29-52 (254)
448 PRK10751 molybdopterin-guanine 92.5 0.17 3.6E-06 50.8 4.7 29 173-201 5-33 (173)
449 COG5238 RNA1 Ran GTPase-activa 92.5 0.099 2.2E-06 54.3 3.2 124 571-698 25-174 (388)
450 COG0467 RAD55 RecA-superfamily 92.5 0.19 4.2E-06 55.3 5.8 55 172-231 21-75 (260)
451 PRK10416 signal recognition pa 92.5 0.56 1.2E-05 52.7 9.5 38 173-212 113-150 (318)
452 cd02029 PRK_like Phosphoribulo 92.5 0.5 1.1E-05 50.5 8.4 26 176-201 1-26 (277)
453 PF07726 AAA_3: ATPase family 92.5 0.069 1.5E-06 49.7 1.8 28 177-206 2-29 (131)
454 PF05659 RPW8: Arabidopsis bro 92.5 0.88 1.9E-05 44.2 9.4 109 2-124 3-112 (147)
455 PF13604 AAA_30: AAA domain; P 92.4 0.38 8.2E-06 50.1 7.5 117 164-295 8-135 (196)
456 TIGR01039 atpD ATP synthase, F 92.4 0.77 1.7E-05 53.4 10.5 93 172-265 141-249 (461)
457 PRK13768 GTPase; Provisional 92.4 0.67 1.4E-05 50.5 9.7 36 175-212 3-38 (253)
458 PRK00131 aroK shikimate kinase 92.4 0.13 2.7E-06 52.9 3.9 27 173-199 3-29 (175)
459 cd00046 DEXDc DEAD-like helica 92.4 0.28 6E-06 47.9 6.3 37 176-212 2-38 (144)
460 PRK10463 hydrogenase nickel in 92.4 0.25 5.4E-06 53.8 6.2 38 164-201 94-131 (290)
461 TIGR03574 selen_PSTK L-seryl-t 92.4 0.35 7.7E-06 52.8 7.6 25 176-200 1-25 (249)
462 KOG1970 Checkpoint RAD17-RFC c 92.4 0.51 1.1E-05 54.6 8.7 48 159-210 88-142 (634)
463 COG3854 SpoIIIAA ncharacterize 92.3 0.39 8.5E-06 48.9 6.9 119 165-295 128-257 (308)
464 cd03283 ABC_MutS-like MutS-lik 92.3 0.64 1.4E-05 48.5 9.0 24 175-198 26-49 (199)
465 PRK08149 ATP synthase SpaL; Va 92.2 0.49 1.1E-05 54.9 8.7 90 172-265 149-253 (428)
466 PRK06936 type III secretion sy 92.2 0.47 1E-05 55.0 8.5 90 172-265 160-264 (439)
467 cd03230 ABC_DR_subfamily_A Thi 92.2 0.42 9.1E-06 48.8 7.4 26 173-198 25-50 (173)
468 COG1936 Predicted nucleotide k 92.2 0.11 2.5E-06 50.6 3.0 20 176-195 2-21 (180)
469 cd01132 F1_ATPase_alpha F1 ATP 92.2 0.87 1.9E-05 49.2 9.9 96 172-271 67-180 (274)
470 CHL00060 atpB ATP synthase CF1 92.1 0.72 1.6E-05 54.0 9.9 93 172-265 159-274 (494)
471 KOG2170 ATPase of the AAA+ sup 92.1 0.56 1.2E-05 50.1 8.0 98 155-265 84-190 (344)
472 cd00227 CPT Chloramphenicol (C 92.1 0.14 3.1E-06 52.3 3.8 26 174-199 2-27 (175)
473 PF10923 DUF2791: P-loop Domai 92.1 1.4 3.1E-05 50.7 12.1 80 155-236 27-116 (416)
474 PF01078 Mg_chelatase: Magnesi 92.0 0.28 6E-06 50.3 5.6 42 153-196 3-44 (206)
475 cd03287 ABC_MSH3_euk MutS3 hom 92.0 0.12 2.5E-06 54.8 3.0 24 173-196 30-53 (222)
476 PF00625 Guanylate_kin: Guanyl 91.9 0.18 3.9E-06 52.0 4.4 39 174-214 2-40 (183)
477 PRK01184 hypothetical protein; 91.9 0.53 1.1E-05 48.7 7.9 21 175-196 2-22 (184)
478 cd02024 NRK1 Nicotinamide ribo 91.9 0.12 2.7E-06 52.7 3.0 23 176-198 1-23 (187)
479 cd01134 V_A-ATPase_A V/A-type 91.9 1 2.3E-05 50.1 10.2 50 172-225 155-205 (369)
480 KOG0924 mRNA splicing factor A 91.9 0.35 7.6E-06 56.7 6.8 119 164-291 363-510 (1042)
481 cd03282 ABC_MSH4_euk MutS4 hom 91.9 0.14 3E-06 53.6 3.4 117 173-298 28-158 (204)
482 cd03222 ABC_RNaseL_inhibitor T 91.8 0.58 1.3E-05 47.6 7.8 27 172-198 23-49 (177)
483 cd01136 ATPase_flagellum-secre 91.8 0.79 1.7E-05 51.2 9.4 90 172-265 67-171 (326)
484 PF03266 NTPase_1: NTPase; In 91.8 0.16 3.4E-06 51.2 3.6 24 177-200 2-25 (168)
485 PRK14531 adenylate kinase; Pro 91.8 0.52 1.1E-05 48.6 7.6 25 175-199 3-27 (183)
486 PRK05922 type III secretion sy 91.7 0.8 1.7E-05 53.2 9.6 90 172-265 155-259 (434)
487 PRK14529 adenylate kinase; Pro 91.7 0.5 1.1E-05 49.8 7.4 85 176-265 2-88 (223)
488 TIGR02322 phosphon_PhnN phosph 91.7 0.15 3.2E-06 52.6 3.5 25 175-199 2-26 (179)
489 cd02020 CMPK Cytidine monophos 91.7 0.14 3E-06 50.8 3.1 24 176-199 1-24 (147)
490 TIGR00176 mobB molybdopterin-g 91.7 0.27 5.9E-06 48.8 5.1 35 176-211 1-35 (155)
491 COG0003 ArsA Predicted ATPase 91.6 0.36 7.8E-06 53.8 6.5 49 174-224 2-50 (322)
492 cd00984 DnaB_C DnaB helicase C 91.6 1.4 3E-05 48.0 11.2 52 173-227 12-63 (242)
493 PRK13948 shikimate kinase; Pro 91.5 0.4 8.6E-06 48.9 6.3 28 172-199 8-35 (182)
494 cd02023 UMPK Uridine monophosp 91.5 0.14 3.1E-06 53.7 3.1 23 176-198 1-23 (198)
495 cd02021 GntK Gluconate kinase 91.5 0.14 3E-06 50.9 2.9 23 176-198 1-23 (150)
496 TIGR01041 ATP_syn_B_arch ATP s 91.5 1.1 2.3E-05 52.8 10.4 94 172-265 139-250 (458)
497 PF00158 Sigma54_activat: Sigm 91.5 0.27 5.8E-06 49.5 4.9 43 155-197 1-45 (168)
498 cd02028 UMPK_like Uridine mono 91.4 0.22 4.8E-06 51.0 4.4 25 176-200 1-25 (179)
499 COG2019 AdkA Archaeal adenylat 91.4 0.2 4.3E-06 48.4 3.6 25 174-198 4-28 (189)
500 PRK05986 cob(I)alamin adenolsy 91.4 1 2.2E-05 45.8 8.8 119 173-291 21-158 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-77 Score=736.71 Aligned_cols=796 Identities=26% Similarity=0.394 Sum_probs=555.1
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHhhHHHhc-
Q 000701 16 LAPPTEHQFNYFRNYKSNFKNLKEELENLKGDRDSMQHRVEDAKRQGEVIEGNVEKWLTKAKNIVIDAEKIIGDEEKAN- 94 (1344)
Q Consensus 16 l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~wl~~~~~~~~d~ed~ld~~~~~~- 94 (1344)
+.+.+.++...+....+.+..+++++..|+. ++++++.+ +.....+..|...+++++|+++|+++.+....
T Consensus 12 ~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~-------~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~ 83 (889)
T KOG4658|consen 12 LDQLLNRESECLDGKDNYILELKENLKALQS-------ALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEI 83 (889)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-------HHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666555566666666666666655 55666555 33477889999999999999999998664211
Q ss_pred ----------------cccccCCC-cChhhhhHHHHHHHHhccccccccccccccccccc-cCCCCccccCCCCCccccc
Q 000701 95 ----------------NRCFKGLC-PNLKTRYQLSKAAQEQLKPIVNHRKEGIQFHTISY-RTIPEDISLQSSTGYEAFE 156 (1344)
Q Consensus 95 ----------------~~~~~~~~-~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (1344)
.-|+.+.+ ..+...+.+++++..+...++.....+ .++.+.. ..+.+.....|...... |
T Consensus 84 ~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~-V 161 (889)
T KOG4658|consen 84 ERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVVGESLDPREKVETRPIQSESD-V 161 (889)
T ss_pred HHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecccccccchhhcccCCCCcccc-c
Confidence 01111222 233344555666666666666521111 1222221 11222233334333333 9
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHh-hcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc
Q 000701 157 SRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAK-ERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE 235 (1344)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 235 (1344)
|.+..++.+.+.|.+++..+++|+||||+||||||++++++.. ++.+|+.++||.||+.++...+..+|+..++.....
T Consensus 162 G~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 162 GLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred cHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc
Confidence 9999999999999988889999999999999999999999998 999999999999999999999999999998874333
Q ss_pred c---cHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHHh-hCCCCcEEccCCCHH
Q 000701 236 E---TVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLK-MGSAPPFLIGVLNEE 311 (1344)
Q Consensus 236 ~---~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~-~~~~~~~~l~~L~~~ 311 (1344)
. ........+.+.+. ++||+||+||||+..+|+.++.+++....|++|++|||++.|+.. +++...+++++|+.+
T Consensus 242 ~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred cchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 2 22345556666664 999999999999999999999999999999999999999999997 788889999999999
Q ss_pred HHHHHHHHHhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCcccchHHHHHH
Q 000701 312 EAWRLFKMTAGDD--VEHRELNSTARNVAMACGGLPIALTTIARALRNR-SMREWKNALQQLRAPSSVNFEGISAEAYSA 388 (1344)
Q Consensus 312 e~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~ 388 (1344)
|||.+|++.+|.. ...+.++++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+.+.+....+.+++.+.++++
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 9999999999854 3345589999999999999999999999999955 888999999999888666777778899999
Q ss_pred HHHHHhcCCChhHHHHHHhccccCCC--CChhHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcccceecC---CCC
Q 000701 389 IDLSIKYLRGDKLRKILLLCSLMGNR--IATSDLFKYCMGWGILKGVNKMADARIKLDALVQELRDSSLLLAGD---NNE 463 (1344)
Q Consensus 389 l~~sy~~L~~~~~k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~ 463 (1344)
+.+||+.||+ ++|.||+|||+||+| |+++.|+.+|+|+||+.+....+.+.+.++.|+++|++|+|++... +..
T Consensus 401 LklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 401 LKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 9999999995 899999999999998 9999999999999999885555666666777999999999998765 457
Q ss_pred cEEEcHHHHHHHHHhhc-----cCCcEEEEec-CCCCCCCCchhhhcceeEEEEecCCCCCCCCCCCCCCcceeecccCC
Q 000701 464 ELSMHDIVRDVATSTAC-----HDQNVFVVRD-ENVWGWPDDEDALEKYYAISIIDSSIPELPEGLEYPKLEFLFMCSKD 537 (1344)
Q Consensus 464 ~~~~h~lv~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~~~~~~~~Lr~L~l~~~~ 537 (1344)
+|.|||+|||+|.+++. ++..+ +.+ .+....+....+...|+ ++++++.+..++....+++|++|.+..+.
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~i--v~~~~~~~~~~~~~~~~~~rr-~s~~~~~~~~~~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQI--VSDGVGLSEIPQVKSWNSVRR-MSLMNNKIEHIAGSSENPKLRTLLLQRNS 556 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceE--EECCcCccccccccchhheeE-EEEeccchhhccCCCCCCccceEEEeecc
Confidence 89999999999999999 55533 333 24444566666766777 99999999999999999999999998876
Q ss_pred CcccccccHHHHhcCCcceEEEeCCCC-CCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecccCC-CcccC
Q 000701 538 PFVEINISKSFFKEMRMLRVVGFSKMQ-LSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSD-IVKLP 614 (1344)
Q Consensus 538 ~~~~~~l~~~~f~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~-l~~lp 614 (1344)
. ....++..+|..++.||||||++|. +..||++|++|.|||||+|+++.++.+ .++++|+.|.+||+..+. +..+|
T Consensus 557 ~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 557 D-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred h-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 3 2577899999999999999999775 688999999999999999988887776 667777777777777663 33444
Q ss_pred hhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEE----EEEe
Q 000701 615 EAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSL----EIDI 690 (1344)
Q Consensus 615 ~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L----~l~~ 690 (1344)
..+..|.+||+|.+.... .......++.+.+|++|..-.+... ....+..+..+.+|+.+ .+.+
T Consensus 636 ~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~----------s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITIS----------SVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred chhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecc----------hhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 445557777777665542 1111111233333333321111100 00111222222222211 1111
Q ss_pred CCCCCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceeeccccccchhhc--cCCCccc-ccc
Q 000701 691 GNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINLERIC--SDPLKVE-SFN 767 (1344)
Q Consensus 691 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~-~l~ 767 (1344)
.... .....+..+.+|+.|.+.+|...+... ....... .|+
T Consensus 704 ~~~~------------------------------------~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 704 CSKR------------------------------------TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred cccc------------------------------------eeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 0000 112223345566666666655433210 0001111 255
Q ss_pred cccEEEEccCcCChhhhhhhhhccCCCccEEEEccCcchhhhcccccccccccCCccccccccccceE-ecCCCCccccc
Q 000701 768 ELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSL-SLGNLPKLSSF 846 (1344)
Q Consensus 768 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~L~~~ 846 (1344)
++..+.+.+|.....+. +..-.|+|+.|.+..|..++.+.+........ . .....|.+++.+ .+.+.+.+..+
T Consensus 748 ~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~-~~i~~f~~~~~l~~~~~l~~l~~i 821 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--K-ELILPFNKLEGLRMLCSLGGLPQL 821 (889)
T ss_pred HHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCHHHHhhhc--c-cEEecccccccceeeecCCCCcee
Confidence 66666666776555543 23345777777777777666665431100000 0 012235556656 45555555555
Q ss_pred ccCCCCCCCCCccccccccccceeecccCCccccccccccccccccccccccccccccc
Q 000701 847 CSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEALELYKI 905 (1344)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 905 (1344)
.... ..++.|+.+.+..||++.. +|.+..+.+.+|
T Consensus 822 ~~~~----------l~~~~l~~~~ve~~p~l~~--------------~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 822 YWLP----------LSFLKLEELIVEECPKLGK--------------LPLLSTLTIVGC 856 (889)
T ss_pred Eecc----------cCccchhheehhcCccccc--------------Cccccccceecc
Confidence 4442 2255688888888887754 556666666654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-59 Score=615.68 Aligned_cols=690 Identities=21% Similarity=0.298 Sum_probs=457.2
Q ss_pred CCCcccccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc---CCCC-------
Q 000701 149 STGYEAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV---SQTP------- 216 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~------- 216 (1344)
+.+.+.+|||+..++++.+++. .+++++|+|+||||+||||||+.+|++.. ..|++.+|+.. +...
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccc
Confidence 3455679999999999999886 45689999999999999999999999876 45888887742 1110
Q ss_pred ----C-HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecCh
Q 000701 217 ----N-IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 217 ----~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
. ...+.++++..+....... ......+.+++. ++|+||||||||+.++|+.+.....+.++|++||||||++
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 0 1223334444332211100 001233555564 8999999999999999998876666667899999999999
Q ss_pred HHHHhhCCCCcEEccCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHh
Q 000701 292 SVLLKMGSAPPFLIGVLNEEEAWRLFKMTAGDDV-EHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQL 370 (1344)
Q Consensus 292 ~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l 370 (1344)
.++...+..+.|+++.+++++||++|+++|+... .+.++.+++++|+++|+|+|||++++|++|++++..+|+.+++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998777778999999999999999999997543 445678999999999999999999999999999999999999998
Q ss_pred cCCCCCCcccchHHHHHHHHHHHhcCCChhHHHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Q 000701 371 RAPSSVNFEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADARIKLDALVQEL 450 (1344)
Q Consensus 371 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L 450 (1344)
.... +..+..+|++||+.|+++..|.||+++|.|+.+.+.+. +..|++.+.... ...++.|
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L 475 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNL 475 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHH
Confidence 7543 46799999999999986458999999999998877765 455655543321 1248889
Q ss_pred hhcccceecCCCCcEEEcHHHHHHHHHhhccCCc-----EEEEecCCCCCC-CCchhhhcceeEEEEecCCCCCCCC---
Q 000701 451 RDSSLLLAGDNNEELSMHDIVRDVATSTACHDQN-----VFVVRDENVWGW-PDDEDALEKYYAISIIDSSIPELPE--- 521 (1344)
Q Consensus 451 ~~~~ll~~~~~~~~~~~h~lv~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~ls~~~~~~~~l~~--- 521 (1344)
++++|++... +.+.|||++|+||++++.++.. -+.+....+... .......++++ ++++.+.+.++..
T Consensus 476 ~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~-i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 476 VDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLG-ITLDIDEIDELHIHEN 552 (1153)
T ss_pred HhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeE-EEeccCccceeeecHH
Confidence 9999998753 5799999999999999976531 010111100000 00111123333 6666555543321
Q ss_pred -CCCCCCcceeecccCCC----cccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccc
Q 000701 522 -GLEYPKLEFLFMCSKDP----FVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIG 595 (1344)
Q Consensus 522 -~~~~~~Lr~L~l~~~~~----~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~ 595 (1344)
...+.+|+.|.+..... .....+|.++..-...||+|++.++.++.+|..+ .+.+|++|+++++.+..+ ..+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 23566677766643310 0123455554322345777777777777777666 467777777777777666 5667
Q ss_pred cccccceeecccC-CCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccch
Q 000701 596 KLKNLEILSMINS-DIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGL 674 (1344)
Q Consensus 596 ~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 674 (1344)
.+.+|++|+++++ .+..+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|......+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp----------- 698 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP----------- 698 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------
Confidence 7777777777765 3556664 666777777777777667777765 6777777777777664321111
Q ss_pred hhhcCCCCCcEEEEEeCCC-CCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceeeccccccc
Q 000701 675 DELMHLPRLTSLEIDIGND-DILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINL 753 (1344)
Q Consensus 675 ~~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~l 753 (1344)
..+ ++++|+.|+++++.. ..+|. ...+|+.|.+ .++. +
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L-------------------------------------~~n~-i 737 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDL-------------------------------------DETA-I 737 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeec-------------------------------------CCCc-c
Confidence 111 455666666665432 12221 1233444444 3321 1
Q ss_pred hhhccCCCcccccccccEEEEccCcCCh------hhhhhhhhccCCCccEEEEccCcchhhhcccccccccccCCccccc
Q 000701 754 ERICSDPLKVESFNELRTMKIENCDKLS------NIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEKT 827 (1344)
Q Consensus 754 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~------~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~ 827 (1344)
..+ |.. ..+++|++|.+.+|.... .+++ ......++|+.|++++|+.+..+|.. ..
T Consensus 738 ~~l---P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~s-------------i~ 799 (1153)
T PLN03210 738 EEF---PSN-LRLENLDELILCEMKSEKLWERVQPLTP-LMTMLSPSLTRLFLSDIPSLVELPSS-------------IQ 799 (1153)
T ss_pred ccc---ccc-ccccccccccccccchhhccccccccch-hhhhccccchheeCCCCCCccccChh-------------hh
Confidence 111 110 123444444444432110 0100 01122356667777666666655542 12
Q ss_pred cccccceEecCCCCcccccccCCCCCCCCCccccccccccceeecccCCccccccccccccccccccccccccccccccc
Q 000701 828 DFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEALELYKINL 907 (1344)
Q Consensus 828 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 907 (1344)
.+++|+.|++.+|.+++.++.. ..+++|+.|++++|..+...+. ..++|+.|++++|.+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~-----------~~L~sL~~L~Ls~c~~L~~~p~----------~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTG-----------INLESLESLDLSGCSRLRTFPD----------ISTNISDLNLSRTGI 858 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCC-----------CCccccCEEECCCCCccccccc----------cccccCEeECCCCCC
Confidence 3666777777777666665433 1356777777777776654211 246899999999988
Q ss_pred eecccCCCCCCccccccccEEEEcccCCcccccchhhhhchhccCeEeeccccccccee
Q 000701 908 EKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEII 966 (1344)
Q Consensus 908 ~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~~l~ 966 (1344)
+. +|.++..+++|+.|++++|++++.++.. ...++.|+.+++++|.++..+.
T Consensus 859 ~~-----iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 859 EE-----VPWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cc-----ChHHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 65 4556778999999999999999998653 6788999999999999887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-38 Score=352.94 Aligned_cols=272 Identities=32% Similarity=0.539 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHHHc--CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc-
Q 000701 158 RFSTLRDIRNALTN--ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH- 234 (1344)
Q Consensus 158 R~~~~~~l~~~l~~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 234 (1344)
|+.++++|.++|.+ ++.++|+|+|+||+||||||++++++...+.+|+.++|+.++...+...++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 788999999999999999999999997788899999999999999999999999999988742
Q ss_pred ---cccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHHhhCC-CCcEEccCCCH
Q 000701 235 ---EETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLKMGS-APPFLIGVLNE 310 (1344)
Q Consensus 235 ---~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 310 (1344)
..+.......+.+.+. ++++|+||||||+...|+.+...++....|++||||||+..++..... ...+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2344556666777664 789999999999999998888777777779999999999988875544 67899999999
Q ss_pred HHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCChHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCCCcccchHHHHH
Q 000701 311 EEAWRLFKMTAGDDV--EHRELNSTARNVAMACGGLPIALTTIARALRN-RSMREWKNALQQLRAPSSVNFEGISAEAYS 387 (1344)
Q Consensus 311 ~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 387 (1344)
+||++||.+.++... ..+..++.+++|+++|+|+||||.++|++|+. .+..+|+.+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997443 34555678999999999999999999999963 3778999999887655522 2225678999
Q ss_pred HHHHHHhcCCChhHHHHHHhccccCCC--CChhHHHHHHHhhccccc
Q 000701 388 AIDLSIKYLRGDKLRKILLLCSLMGNR--IATSDLFKYCMGWGILKG 432 (1344)
Q Consensus 388 ~l~~sy~~L~~~~~k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~ 432 (1344)
++.+||+.||+ ++|+||.|||+||++ |+.+.++++|+++|++..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999998 799999999999997 889999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-33 Score=367.13 Aligned_cols=139 Identities=22% Similarity=0.188 Sum_probs=89.1
Q ss_pred ccchHhhhhcccchhcccccCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEEcCceeeEecCCCccccccc
Q 000701 1054 FTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKHVD 1133 (1344)
Q Consensus 1054 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~ 1133 (1344)
+++|+.|++++|.+.+..+..+ ..++|+.|++++|++++..|..+ .++++|+.|+++.|.+.+.+|.
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~--------- 517 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPD--------- 517 (968)
T ss_pred CCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-hhhhccCEEECcCCcceeeCCh---------
Confidence 4455555555555433222211 13678888888778877777654 6788888888887777654331
Q ss_pred cccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccccccccccCCcccccccccEEEEecCCCcccccchh
Q 000701 1134 VRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCS 1213 (1344)
Q Consensus 1134 ~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~ 1213 (1344)
.+..+++|++|++++|.-...+|. .+..+++|+.|++++|. +.... |.
T Consensus 518 ----------------------------~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~-l~~~~-p~ 565 (968)
T PLN00113 518 ----------------------------ELSSCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQNQ-LSGEI-PK 565 (968)
T ss_pred ----------------------------HHcCccCCCEEECCCCcccccCCh--hHhCcccCCEEECCCCc-ccccC-Ch
Confidence 112366777788877655555555 56777888888888754 44332 34
Q ss_pred hHhhhcccceEEEcccccceEEee
Q 000701 1214 VAKSLERLVMLSISGCSAMRQVII 1237 (1344)
Q Consensus 1214 ~~~~L~~L~~L~i~~c~~l~~~~~ 1237 (1344)
.+.++++|+.|++++|+....+|.
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCC
Confidence 556778888888888877666664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-32 Score=360.53 Aligned_cols=513 Identities=19% Similarity=0.192 Sum_probs=384.3
Q ss_pred ceeEEEEecCCCCCCCC--CCCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCC-cCCcccccCCCCcEE
Q 000701 505 KYYAISIIDSSIPELPE--GLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLS-SLPSSMDLLVNLQTL 581 (1344)
Q Consensus 505 ~~~~ls~~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L 581 (1344)
++. +.+.++.+..... ...+++|+.|.+.++.. ...+|..+|..+++||+|+|++|.+. .+|. +.+.+|++|
T Consensus 71 v~~-L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 71 VVS-IDLSGKNISGKISSAIFRLPYIQTINLSNNQL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred EEE-EEecCCCccccCChHHhCCCCCCEEECCCCcc--CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 444 7777777654332 24789999999988764 45799999999999999999999986 4564 568999999
Q ss_pred EcCCCCCCCc--cccccccccceeecccCCCc-ccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccc
Q 000701 582 SLDQSMLGDI--AIIGKLKNLEILSMINSDIV-KLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 582 ~L~~~~i~~l--~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 658 (1344)
+|++|.+... ..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 9999988743 67999999999999999875 78899999999999999999444456665 89999999999999876
Q ss_pred cceeccccccccccchhhhcCCCCCcEEEEEeCCCC-CCCCcc-ccccCceeEEEecCCCCCCcccceeccccccCccce
Q 000701 659 QWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDD-ILPEGF-FSRRLENFKISVGDAESVIPSEVLMADDWASGTLNI 736 (1344)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~ 736 (1344)
. +..+..++++++|+.|++++|... .+|..+ .+++|+.|.+..+..... ....+
T Consensus 225 ~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-------------~p~~l 280 (968)
T PLN00113 225 S-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-------------IPPSI 280 (968)
T ss_pred C-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-------------CchhH
Confidence 2 334556889999999999988765 456555 678999999876653211 12234
Q ss_pred eeccccceeeccccccchhhccCCCcccccccccEEEEccCcCChhhhhhhhhccCCCccEEEEccCcchhhhccccccc
Q 000701 737 YVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEA 816 (1344)
Q Consensus 737 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~ 816 (1344)
..+++|+.|+++++.-...+ +.....+++|+.|++.+|.....++ ..+..+++|+.|++++|.....++..
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~---- 351 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEI---PELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIPKN---- 351 (968)
T ss_pred hhccCcCEEECcCCeeccCC---ChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCChH----
Confidence 46789999999887533332 3445678999999999886544443 56788999999999988754444432
Q ss_pred ccccCCccccccccccceEecCCCCcccccccCCCCCCCCCccccccccccceeecccCCcccccccccccccccccccc
Q 000701 817 DINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPN 896 (1344)
Q Consensus 817 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~ 896 (1344)
...+++|+.|+++++.-...++.. ...+++|+.|++.++.-.... + ..+..+++
T Consensus 352 ---------l~~~~~L~~L~Ls~n~l~~~~p~~----------~~~~~~L~~L~l~~n~l~~~~-----p--~~~~~~~~ 405 (968)
T PLN00113 352 ---------LGKHNNLTVLDLSTNNLTGEIPEG----------LCSSGNLFKLILFSNSLEGEI-----P--KSLGACRS 405 (968)
T ss_pred ---------HhCCCCCcEEECCCCeeEeeCChh----------HhCcCCCCEEECcCCEecccC-----C--HHHhCCCC
Confidence 124788999999987543333222 234678889998887543221 1 33456899
Q ss_pred ccccccccccceecccCCCCCCccccccccEEEEcccCCcccccchhhhhchhccCeEeecccccccceeccccccccCC
Q 000701 897 LEALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNP 976 (1344)
Q Consensus 897 L~~L~L~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 976 (1344)
|+.|++++|+++. .+|..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.....++.
T Consensus 406 L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~--------- 470 (968)
T PLN00113 406 LRRVRLQDNSFSG----ELPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPD--------- 470 (968)
T ss_pred CCEEECcCCEeee----ECChhHhcCCCCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCc---------
Confidence 9999999998873 356677789999999999864 554433 2356789999999999985544432
Q ss_pred eeecccccceecccccccccccCcccccCCCCcceeEeecCCCccccccccCCCCCCcCCcccccccccccchhhhhccc
Q 000701 977 CFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFTN 1056 (1344)
Q Consensus 977 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1344)
....++|+.|++++|.....++.. +..+++|++|++++|.....+|..+ ..+++
T Consensus 471 ~~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~------------------------~~l~~ 524 (968)
T PLN00113 471 SFGSKRLENLDLSRNQFSGAVPRK--LGSLSELMQLKLSENKLSGEIPDEL------------------------SSCKK 524 (968)
T ss_pred ccccccceEEECcCCccCCccChh--hhhhhccCEEECcCCcceeeCChHH------------------------cCccC
Confidence 113478999999998755555543 3678999999999987665665333 35789
Q ss_pred hHhhhhcccchhcccccCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEEcCceeeEecCCC
Q 000701 1057 LEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSNEG 1126 (1344)
Q Consensus 1057 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~c~~l~~~~~~~~ 1126 (1344)
|++|++++|.+++..+..+. .+++|+.|++++|++++.+|..+ .++++|+.|+++.|.+.+.+|..+
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFS--EMPVLSQLDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred CCEEECCCCcccccCChhHh--CcccCCEEECCCCcccccCChhH-hcCcccCEEeccCCcceeeCCCcc
Confidence 99999999998876555443 46899999999999999999776 789999999999888887777543
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=4e-25 Score=255.39 Aligned_cols=454 Identities=22% Similarity=0.248 Sum_probs=295.0
Q ss_pred cccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhc
Q 000701 541 EINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGL 619 (1344)
Q Consensus 541 ~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 619 (1344)
....|-.+.++.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|... .+++++.+|++|.|.+|.++.+|.++..
T Consensus 33 ~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 33 LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence 456666666666679999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred cCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCc
Q 000701 620 LTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEG 699 (1344)
Q Consensus 620 L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~ 699 (1344)
+++|+.|+++.| .+..+|.- +..++.+..+..++|.. +..++... ++.+++..+....
T Consensus 113 lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~---------------~~~lg~~~-ik~~~l~~n~l~~---- 170 (1081)
T KOG0618|consen 113 LKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNNEK---------------IQRLGQTS-IKKLDLRLNVLGG---- 170 (1081)
T ss_pred hhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcchh---------------hhhhcccc-chhhhhhhhhccc----
Confidence 999999999999 78888875 78888888887777611 11111111 2333322221100
Q ss_pred cccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceeeccccccchhhccCCCcccccccccEEEEccCcC
Q 000701 700 FFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDK 779 (1344)
Q Consensus 700 ~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~ 779 (1344)
.+ ......+.. .|+|+++..
T Consensus 171 -------------------------------------------------------~~---~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 171 -------------------------------------------------------SF---LIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred -------------------------------------------------------ch---hcchhhhhe--eeecccchh
Confidence 00 000111111 244444321
Q ss_pred ChhhhhhhhhccCCCccEEEEccCcchhhhcccccccccccCCccccccccccceEecCCCCcccccccCCCCCCCCCcc
Q 000701 780 LSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNR 859 (1344)
Q Consensus 780 l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 859 (1344)
.. ..+..+++|+.|.... ..+..+.. .-++|+.|+...++-
T Consensus 191 -~~----~dls~~~~l~~l~c~r-n~ls~l~~----------------~g~~l~~L~a~~n~l----------------- 231 (1081)
T KOG0618|consen 191 -EV----LDLSNLANLEVLHCER-NQLSELEI----------------SGPSLTALYADHNPL----------------- 231 (1081)
T ss_pred -hh----hhhhhccchhhhhhhh-cccceEEe----------------cCcchheeeeccCcc-----------------
Confidence 11 1223334444443322 11111111 124444444444432
Q ss_pred ccccccccceeecccCCccccccccccccccccccccccccccccccceecccCCCCCCccccccccEEEEcccCCcccc
Q 000701 860 QDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYI 939 (1344)
Q Consensus 860 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l 939 (1344)
.+... . ....+|+.++++.++++. +|.|+..+.+|+.+++.+ ++++.+
T Consensus 232 -----------------~~~~~---~------p~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~-N~l~~l 279 (1081)
T KOG0618|consen 232 -----------------TTLDV---H------PVPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANH-NRLVAL 279 (1081)
T ss_pred -----------------eeecc---c------cccccceeeecchhhhhc-----chHHHHhcccceEecccc-hhHHhh
Confidence 21100 0 024578888888887764 356677888888888877 466666
Q ss_pred cchhhhhchhccCeEeecccccccceeccccccccCCeeecccccceecccccccccccCcccccCCC-CcceeEeecCC
Q 000701 940 FSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNPCFIFQRLTSLRLLRLPELRCLYPRMHISKWP-SLKTLQVCSCD 1018 (1344)
Q Consensus 940 ~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~-~L~~L~l~~c~ 1018 (1344)
|. .+...++|+.|.+..|. ++.++... ..+.+|+.|++..+ +|.++|... +.-.. +|..|..+ |.
T Consensus 280 p~--ri~~~~~L~~l~~~~ne-l~yip~~l--------e~~~sL~tLdL~~N-~L~~lp~~~-l~v~~~~l~~ln~s-~n 345 (1081)
T KOG0618|consen 280 PL--RISRITSLVSLSAAYNE-LEYIPPFL--------EGLKSLRTLDLQSN-NLPSLPDNF-LAVLNASLNTLNVS-SN 345 (1081)
T ss_pred HH--HHhhhhhHHHHHhhhhh-hhhCCCcc--------cccceeeeeeehhc-cccccchHH-HhhhhHHHHHHhhh-hc
Confidence 43 25566777777777665 55554311 23667777777765 355555432 11122 24555553 33
Q ss_pred CccccccccCCCCCCcCCcccccccccccchhhhhccchHhhhhcccchhcccccCCCcccCCCceEEEEEcCCcccccc
Q 000701 1019 KMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFP 1098 (1344)
Q Consensus 1019 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 1098 (1344)
.+..+| .+.+...+.|+.|.+.+|.+++-.-.. ..++..|+.|++++|++. .+|
T Consensus 346 ~l~~lp-----------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyNrL~-~fp 399 (1081)
T KOG0618|consen 346 KLSTLP-----------------------SYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYNRLN-SFP 399 (1081)
T ss_pred cccccc-----------------------cccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeecccccc-cCC
Confidence 455443 112356789999999999976642221 235689999999999997 688
Q ss_pred hhHHhhcCCcceEEEEcCceeeEecCCCccccccccccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccc
Q 000701 1099 VGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKHVDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCR 1178 (1344)
Q Consensus 1099 ~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~ 1178 (1344)
.+.+.++..|++|.+++|+++.+ | ..+ .++..|++|...+ +
T Consensus 400 as~~~kle~LeeL~LSGNkL~~L-p-----------------------------~tv--------a~~~~L~tL~ahs-N 440 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTL-P-----------------------------DTV--------ANLGRLHTLRAHS-N 440 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhh-h-----------------------------HHH--------HhhhhhHHHhhcC-C
Confidence 88889999999999999999752 2 111 2367788887766 7
Q ss_pred cccccccCCcccccccccEEEEecCCCcccccchhhHhhhcccceEEEccccc
Q 000701 1179 NLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCSVAKSLERLVMLSISGCSA 1231 (1344)
Q Consensus 1179 ~l~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~i~~c~~ 1231 (1344)
.+..+|. +..++.|+.+|++ |++|+.+..+....+ +.|++|+++|+..
T Consensus 441 ~l~~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 441 QLLSFPE---LAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ceeechh---hhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 7888885 8889999999999 689988855444333 6899999999875
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-23 Score=240.55 Aligned_cols=484 Identities=20% Similarity=0.231 Sum_probs=307.0
Q ss_pred EEeCCCCCCcCCcccccCCCCcEEEcCCCCCCC-c-cccccccccceeecccCCCcccChhhhccCcccEEecccccccc
Q 000701 558 VGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGD-I-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLK 635 (1344)
Q Consensus 558 L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 635 (1344)
+|.++..++.+|..+..-.+|+.|+++.|.+-. + +.+.+..+|+.||+++|.+...|..+..+.+|+.|+++.| .+.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHh
Confidence 455666666666666666667777777774333 3 5566666677777777777777777777777777777776 666
Q ss_pred ccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCcc-ccccCceeEEEecC
Q 000701 636 VIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEGF-FSRRLENFKISVGD 714 (1344)
Q Consensus 636 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 714 (1344)
.+|.+ .+++.+|++|.+.++.. ...+.++..+.+|+.|+++.|....+|..+ .+..
T Consensus 82 ~vp~s-~~~~~~l~~lnL~~n~l------------~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~---------- 138 (1081)
T KOG0618|consen 82 SVPSS-CSNMRNLQYLNLKNNRL------------QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTA---------- 138 (1081)
T ss_pred hCchh-hhhhhcchhheeccchh------------hcCchhHHhhhcccccccchhccCCCchhHHhhhH----------
Confidence 66654 67777777777766654 222334556667777777777666655433 1111
Q ss_pred CCCCCcccceeccccccCccceeeccccceeeccccccchhhccCCCcccccccccEEEEccCcCChhhhhhhhhccCCC
Q 000701 715 AESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPG 794 (1344)
Q Consensus 715 ~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 794 (1344)
++.+..++...+..+ +. ..++.+++........+. ..+..+..
T Consensus 139 ---------------------------~~~~~~s~N~~~~~l-------g~-~~ik~~~l~~n~l~~~~~--~~i~~l~~ 181 (1081)
T KOG0618|consen 139 ---------------------------EEELAASNNEKIQRL-------GQ-TSIKKLDLRLNVLGGSFL--IDIYNLTH 181 (1081)
T ss_pred ---------------------------HHHHhhhcchhhhhh-------cc-ccchhhhhhhhhcccchh--cchhhhhe
Confidence 122222222111111 00 114444444432222221 22223333
Q ss_pred ccEEEEccCcchhhhcccccccccccCCccccccccccceEecCCCCcccccccCCCCCCCCCccccccccccceeeccc
Q 000701 795 LERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNG 874 (1344)
Q Consensus 795 L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 874 (1344)
.|++.++... .++++.+++++.+... ...|..+.++
T Consensus 182 --~ldLr~N~~~---------------------------~~dls~~~~l~~l~c~-------------rn~ls~l~~~-- 217 (1081)
T KOG0618|consen 182 --QLDLRYNEME---------------------------VLDLSNLANLEVLHCE-------------RNQLSELEIS-- 217 (1081)
T ss_pred --eeecccchhh---------------------------hhhhhhccchhhhhhh-------------hcccceEEec--
Confidence 3777664422 2233344444333221 2233343332
Q ss_pred CCccccccccccccccccccccccccccccccceecccCCCCCCccccccccEEEEcccCCcccccchhhhhchhccCeE
Q 000701 875 ISLEDSLHTSTPFFNEKVVLPNLEALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHL 954 (1344)
Q Consensus 875 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 954 (1344)
-++|+.|+.+.|.++..... +...+|++++++. .+++.+| .++..+.+|+.+
T Consensus 218 -------------------g~~l~~L~a~~n~l~~~~~~------p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l 269 (1081)
T KOG0618|consen 218 -------------------GPSLTALYADHNPLTTLDVH------PVPLNLQYLDISH-NNLSNLP--EWIGACANLEAL 269 (1081)
T ss_pred -------------------CcchheeeeccCcceeeccc------cccccceeeecch-hhhhcch--HHHHhcccceEe
Confidence 47889999999977643221 1456899999998 5788875 679999999999
Q ss_pred eecccccccceeccccccccCCeeecccccceecccccccccccCcccccCCCCcceeEeecCCCccccccccCCCCCCc
Q 000701 955 EIHDCISLEEIIYVEGADKVNPCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNI 1034 (1344)
Q Consensus 955 ~l~~c~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 1034 (1344)
++..+. +..++. ......+|++|.+..|. ++.+++.. ....+|++|++..+. +..+|..+
T Consensus 270 ~~n~N~-l~~lp~--------ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~N~-L~~lp~~~------- 329 (1081)
T KOG0618|consen 270 NANHNR-LVALPL--------RISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQSNN-LPSLPDNF------- 329 (1081)
T ss_pred cccchh-HHhhHH--------HHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehhcc-ccccchHH-------
Confidence 987765 444432 11235688888888873 67776654 568999999997754 67675322
Q ss_pred CCcccccccccccchhhhhccchHhhhhcccchhcccccCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEE
Q 000701 1035 DSNQLRISMQQPLFFEEKIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLS 1114 (1344)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~ 1114 (1344)
......+|..|+.+.+.+...+ .+....++.|+.|.+.+|.+++..-.- +.+..+|+.|+++
T Consensus 330 ---------------l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 330 ---------------LAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLS 391 (1081)
T ss_pred ---------------HhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeec
Confidence 1122345788888888876554 233344678999999999999876543 4788999999999
Q ss_pred cCceeeEecCCCccccccccccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccccccccccCCccccccc
Q 000701 1115 CNSYEEIFSNEGCLEKHVDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGN 1194 (1344)
Q Consensus 1115 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 1194 (1344)
.|.+.+ ||... +.++..|+.|+++| ++|+.+|. ....+..
T Consensus 392 yNrL~~-fpas~------------------------------------~~kle~LeeL~LSG-NkL~~Lp~--tva~~~~ 431 (1081)
T KOG0618|consen 392 YNRLNS-FPASK------------------------------------LRKLEELEELNLSG-NKLTTLPD--TVANLGR 431 (1081)
T ss_pred cccccc-CCHHH------------------------------------HhchHHhHHHhccc-chhhhhhH--HHHhhhh
Confidence 998865 44211 12466799999999 99999997 7889999
Q ss_pred ccEEEEecCCCcccccchhhHhhhcccceEEEcccccceEEeeccCCCCchhhhhcCcceEEe-CccceeeeccCCCcc
Q 000701 1195 LTHLVVHDCEKLVSLVTCSVAKSLERLVMLSISGCSAMRQVIIGCGQGDSDIAAANLKEEIVF-SKLRYIGLLDLENLT 1272 (1344)
Q Consensus 1195 L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~ 1272 (1344)
|+.|...+ +.|.++ |+. ..+++|+.+|++.+ +++.+.-... .. |.|++|+++|.+.+.
T Consensus 432 L~tL~ahs-N~l~~f--Pe~-~~l~qL~~lDlS~N-~L~~~~l~~~---------------~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSF--PEL-AQLPQLKVLDLSCN-NLSEVTLPEA---------------LPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hHHHhhcC-Cceeec--hhh-hhcCcceEEecccc-hhhhhhhhhh---------------CCCcccceeeccCCcccc
Confidence 99999887 778777 444 68899999999765 4555422111 13 899999999998754
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.9e-21 Score=251.82 Aligned_cols=354 Identities=24% Similarity=0.280 Sum_probs=223.3
Q ss_pred ccccHHHHhcCCcceEEEeCCCCC-------CcCCcccccCC-CCcEEEcCCCCCCCccccccccccceeecccCCCccc
Q 000701 542 INISKSFFKEMRMLRVVGFSKMQL-------SSLPSSMDLLV-NLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKL 613 (1344)
Q Consensus 542 ~~l~~~~f~~l~~Lr~L~L~~~~i-------~~lp~~i~~L~-~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~l 613 (1344)
..+....|.+|++|++|.+..+.. ..+|..+..++ +||+|++.++.++.++....+.+|++|+++++.+..+
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 457788899999999999976532 24688787775 5999999999998885555789999999999999999
Q ss_pred ChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCC
Q 000701 614 PEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGND 693 (1344)
Q Consensus 614 p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 693 (1344)
|.++..+++|+.|+++++..++.+|. ++.+++|++|++.+|.... ..+..++.++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-----------~lp~si~~L~------------ 681 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-----------ELPSSIQYLN------------ 681 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-----------ccchhhhccC------------
Confidence 99999999999999999877888885 7889999999988875411 1112233333
Q ss_pred CCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceeeccccccchhhccCCCcccccccccEEE
Q 000701 694 DILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMK 773 (1344)
Q Consensus 694 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 773 (1344)
+|+.|++.+|..++.+ +... .+++|+.|+
T Consensus 682 -----------------------------------------------~L~~L~L~~c~~L~~L---p~~i-~l~sL~~L~ 710 (1153)
T PLN03210 682 -----------------------------------------------KLEDLDMSRCENLEIL---PTGI-NLKSLYRLN 710 (1153)
T ss_pred -----------------------------------------------CCCEEeCCCCCCcCcc---CCcC-CCCCCCEEe
Confidence 4444444444444443 2212 578899999
Q ss_pred EccCcCChhhhhhhhhccCCCccEEEEccCcchhhhcccccccccccCCccccccccccceEecCCCCcccccccCCCCC
Q 000701 774 IENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTP 853 (1344)
Q Consensus 774 L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 853 (1344)
+++|..+..++. ..++|++|+++++. ++.+|.. ..+++|++|.+.++....-+. ...+.
T Consensus 711 Lsgc~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP~~--------------~~l~~L~~L~l~~~~~~~l~~-~~~~l 769 (1153)
T PLN03210 711 LSGCSRLKSFPD-----ISTNISWLDLDETA-IEEFPSN--------------LRLENLDELILCEMKSEKLWE-RVQPL 769 (1153)
T ss_pred CCCCCCcccccc-----ccCCcCeeecCCCc-ccccccc--------------ccccccccccccccchhhccc-ccccc
Confidence 999987776542 24688999998754 5555542 136788888877754322110 00000
Q ss_pred CCCCccccccccccceeecccCCccccccccccccccccccccccccccccc-cceecccCCCCCCccccccccEEEEcc
Q 000701 854 SASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEALELYKI-NLEKIWHSQLPAMFPGFQSLTRLIVCR 932 (1344)
Q Consensus 854 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~~~~~~l~~~~~~l~~L~~L~l~~ 932 (1344)
.......+++|+.|++++|+.+...+ ..+..+++|+.|+|++| +++.+ |..+ ++++|+.|++++
T Consensus 770 --~~~~~~~~~sL~~L~Ls~n~~l~~lP-------~si~~L~~L~~L~Ls~C~~L~~L-----P~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 770 --TPLMTMLSPSLTRLFLSDIPSLVELP-------SSIQNLHKLEHLEIENCINLETL-----PTGI-NLESLESLDLSG 834 (1153)
T ss_pred --chhhhhccccchheeCCCCCCccccC-------hhhhCCCCCCEEECCCCCCcCee-----CCCC-CccccCEEECCC
Confidence 00001123566666666665544422 22335666666666666 44433 2222 456666666666
Q ss_pred cCCcccccchhhhhchhccCeEeecccccccceeccccccccCCeeecccccceecccccccccccCcccccCCCCccee
Q 000701 933 CFNLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNPCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTL 1012 (1344)
Q Consensus 933 c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L 1012 (1344)
|.++..+|. ..++|+.|+++++. ++.++.. ...+++|+.|++.+|++++.++... ..+++|+.+
T Consensus 835 c~~L~~~p~-----~~~nL~~L~Ls~n~-i~~iP~s--------i~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L 898 (1153)
T PLN03210 835 CSRLRTFPD-----ISTNISDLNLSRTG-IEEVPWW--------IEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETV 898 (1153)
T ss_pred CCccccccc-----cccccCEeECCCCC-CccChHH--------HhcCCCCCEEECCCCCCcCccCccc--ccccCCCee
Confidence 666655432 12456666665543 4444321 1235666666666666666665543 456666666
Q ss_pred EeecCCCcccc
Q 000701 1013 QVCSCDKMKTF 1023 (1344)
Q Consensus 1013 ~l~~c~~l~~l 1023 (1344)
++++|++++.+
T Consensus 899 ~l~~C~~L~~~ 909 (1153)
T PLN03210 899 DFSDCGALTEA 909 (1153)
T ss_pred ecCCCcccccc
Confidence 66666666544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=4.5e-24 Score=223.31 Aligned_cols=489 Identities=21% Similarity=0.214 Sum_probs=314.8
Q ss_pred EEEecCCCCCCCCC-CCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCC
Q 000701 509 ISIIDSSIPELPEG-LEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSM 587 (1344)
Q Consensus 509 ls~~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 587 (1344)
+.+..|++..+.++ ..+..+.+|.+.++. ..++|+.+ +.+..+..|+.++|++..+|..++++..|+.|+.++|.
T Consensus 50 lils~N~l~~l~~dl~nL~~l~vl~~~~n~---l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLKNLACLTVLNVHDNK---LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhccCchhhccHhhhcccceeEEEeccch---hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 44555666555443 356667777777665 67888876 78888999999999999999999999999999999998
Q ss_pred CCCc-cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceecccc
Q 000701 588 LGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVN 666 (1344)
Q Consensus 588 i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 666 (1344)
+..+ ++++.+..|..|+..+|++..+|.++..+.+|..|++.++ .++.+|++.+. ++.|++|+...|-.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L-------- 195 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLL-------- 195 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhh--------
Confidence 8887 8899999999999999999999999999999999999998 88888888544 99999998766644
Q ss_pred ccccccchhhhcCCCCCcEEEEEeCCCCCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceee
Q 000701 667 TERSCAGLDELMHLPRLTSLEIDIGNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLT 746 (1344)
Q Consensus 667 ~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~ 746 (1344)
+..+.+++.+.+|..|++..|.+..+|+.-.+..|+.+++..+... ..|. .....++++..|+
T Consensus 196 ----~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpa------------e~~~~L~~l~vLD 258 (565)
T KOG0472|consen 196 ----ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPA------------EHLKHLNSLLVLD 258 (565)
T ss_pred ----hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHH------------HHhcccccceeee
Confidence 4456678888888889999888888885557777777776654321 0000 1112567778888
Q ss_pred ccccccchhhccCCCcccccccccEEEEccCcCChhhhhhhhhccCCCccEEEEccCcchhhhcccccccccccCCcccc
Q 000701 747 LYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEK 826 (1344)
Q Consensus 747 l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~ 826 (1344)
+.+. +++++ |....-+.+|.+|+++++ .++.+| ..++++ +|+.|.+.|++ +..+.... - ..
T Consensus 259 LRdN-klke~---Pde~clLrsL~rLDlSNN-~is~Lp--~sLgnl-hL~~L~leGNP-lrTiRr~i-----i-----~~ 319 (565)
T KOG0472|consen 259 LRDN-KLKEV---PDEICLLRSLERLDLSNN-DISSLP--YSLGNL-HLKFLALEGNP-LRTIRREI-----I-----SK 319 (565)
T ss_pred cccc-ccccC---chHHHHhhhhhhhcccCC-ccccCC--cccccc-eeeehhhcCCc-hHHHHHHH-----H-----cc
Confidence 8776 45555 555556778889999986 456665 568888 89999998876 33332110 0 00
Q ss_pred ccccccceEec-CCCCcccccccCCCCCCCCCccccccccccceeecccCCccccccccccccccccccccccccccccc
Q 000701 827 TDFAELKSLSL-GNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEALELYKI 905 (1344)
Q Consensus 827 ~~~~~L~~L~l-~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 905 (1344)
..-.-|++|.= ..|..+..- .++ ... .....-..+......-+.+.|++++-
T Consensus 320 gT~~vLKyLrs~~~~dglS~s-e~~-----------~e~---------------~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQS-EGG-----------TET---------------AMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCC-ccc-----------ccc---------------cCCCCCCcccchhhhhhhhhhccccc
Confidence 00011222210 001111000 000 000 00000000112224556777777777
Q ss_pred cceecccCCCCCCccccccccEEEEcccCCcccccchhhhhchhccCeEeecccccccceeccccccccCCeeecccccc
Q 000701 906 NLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNPCFIFQRLTS 985 (1344)
Q Consensus 906 ~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~L~~ 985 (1344)
+++.++...+... .-.-....++++ +++..+|. .+..+..+.+.-+.+.+.+..++. ....+++|..
T Consensus 373 qlt~VPdEVfea~--~~~~Vt~Vnfsk-NqL~elPk--~L~~lkelvT~l~lsnn~isfv~~--------~l~~l~kLt~ 439 (565)
T KOG0472|consen 373 QLTLVPDEVFEAA--KSEIVTSVNFSK-NQLCELPK--RLVELKELVTDLVLSNNKISFVPL--------ELSQLQKLTF 439 (565)
T ss_pred ccccCCHHHHHHh--hhcceEEEeccc-chHhhhhh--hhHHHHHHHHHHHhhcCccccchH--------HHHhhhccee
Confidence 7776655332211 111245666666 45555533 244444444443333333332221 2234677888
Q ss_pred eecccccccccccCcccccCCCCcceeEeecCCCccccccccCCCCCCcCCcccccccccccchhhhhccchHhhhhccc
Q 000701 986 LRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFTNLEEVALSRK 1065 (1344)
Q Consensus 986 L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 1065 (1344)
|++++++ +.++|.+. +.+..||.|+|+.+ ....+|... ..+..++.+-.++|
T Consensus 440 L~L~NN~-Ln~LP~e~--~~lv~Lq~LnlS~N-rFr~lP~~~------------------------y~lq~lEtllas~n 491 (565)
T KOG0472|consen 440 LDLSNNL-LNDLPEEM--GSLVRLQTLNLSFN-RFRMLPECL------------------------YELQTLETLLASNN 491 (565)
T ss_pred eecccch-hhhcchhh--hhhhhhheeccccc-ccccchHHH------------------------hhHHHHHHHHhccc
Confidence 8887764 67777765 67778999999876 455555222 12345566666778
Q ss_pred chhcccccCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEEcCcee
Q 000701 1066 DIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYE 1119 (1344)
Q Consensus 1066 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~c~~l~ 1119 (1344)
++..+.+..+ ..+.+|..|++..|.+. .+|..+ +++++|++|++.+|.+.
T Consensus 492 qi~~vd~~~l--~nm~nL~tLDL~nNdlq-~IPp~L-gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGL--KNMRNLTTLDLQNNDLQ-QIPPIL-GNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHh--hhhhhcceeccCCCchh-hCChhh-ccccceeEEEecCCccC
Confidence 8877655532 24688999999988887 556554 89999999999988876
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-21 Score=212.67 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=35.4
Q ss_pred hccchHhhhhcccchhcccc-cCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEEcCceee
Q 000701 1053 IFTNLEEVALSRKDIMLILQ-GNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEE 1120 (1344)
Q Consensus 1053 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~c~~l~~ 1120 (1344)
.+.+|++|+|++|.++-... ...+..++++|+.|.+.+|++. .+|...+.++++|+.|++..|-+.+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCccee
Confidence 35566666666666432211 1122223556666666666665 4444444666666666666555554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4e-21 Score=210.45 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=108.0
Q ss_pred CCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc--cccccccccce
Q 000701 525 YPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI--AIIGKLKNLEI 602 (1344)
Q Consensus 525 ~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~ 602 (1344)
.+..++|++.++. +.++...+|.++.+|+.+++..|.++.+|.......||+.|+|.+|.|+.+ +.+..+..|+.
T Consensus 77 p~~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccccc---cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 4556667776654 566666777778888888887777777777666667788888888777777 66777777788
Q ss_pred eecccCCCcccC-hhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCC
Q 000701 603 LSMINSDIVKLP-EAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLP 681 (1344)
Q Consensus 603 L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~ 681 (1344)
|||+.|.|.++| ..+..-.++++|+|++| .++.+..+.|..|.+|-.|.+++|.+. .-....+++|+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrit-----------tLp~r~Fk~L~ 221 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRIT-----------TLPQRSFKRLP 221 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccc-----------ccCHHHhhhcc
Confidence 888777777777 45666677777777777 677777666777777777777776652 22234466666
Q ss_pred CCcEEEEEeCCC
Q 000701 682 RLTSLEIDIGND 693 (1344)
Q Consensus 682 ~L~~L~l~~~~~ 693 (1344)
+|+.|++..|.+
T Consensus 222 ~L~~LdLnrN~i 233 (873)
T KOG4194|consen 222 KLESLDLNRNRI 233 (873)
T ss_pred hhhhhhccccce
Confidence 777776665544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=7.7e-23 Score=214.14 Aligned_cols=155 Identities=23% Similarity=0.374 Sum_probs=100.4
Q ss_pred cceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecc
Q 000701 528 LEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMI 606 (1344)
Q Consensus 528 Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~ 606 (1344)
+..+.+.++. ...+.++. .++..|.||++++|.+.++|.+++.+..++.|+.++|++..+ +.++.+.+|+.|+.+
T Consensus 47 l~~lils~N~---l~~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHND---LEVLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCc---hhhccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 3344444444 34444444 677777777777777777777777777777777777777766 677777777777777
Q ss_pred cCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEE
Q 000701 607 NSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSL 686 (1344)
Q Consensus 607 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L 686 (1344)
.|.+.++|++++.+..|..|+..+| .+..+|++ ++++.+|..|++.++.... .+...-.++.|++|
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~------------l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKA------------LPENHIAMKRLKHL 188 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhh------------CCHHHHHHHHHHhc
Confidence 7777777777777777777777776 67777776 6777777777666654421 11122225556666
Q ss_pred EEEeCCCCCCCCcc
Q 000701 687 EIDIGNDDILPEGF 700 (1344)
Q Consensus 687 ~l~~~~~~~~~~~~ 700 (1344)
+...|....+|..+
T Consensus 189 d~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 189 DCNSNLLETLPPEL 202 (565)
T ss_pred ccchhhhhcCChhh
Confidence 66555555555443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.8e-21 Score=212.40 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=81.6
Q ss_pred CCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceee
Q 000701 526 PKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILS 604 (1344)
Q Consensus 526 ~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~ 604 (1344)
+-+|-.++.++.. ....+|.++ ..|+.++.|.|..+.+..+|+.++.|.+|++|.+.+|.+..+ ..++.|+.|+.++
T Consensus 7 pFVrGvDfsgNDF-sg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDF-SGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcC-CCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 3345555555443 234455554 667777777777777777777777777777777777766666 6666677777777
Q ss_pred cccCCCc--ccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccc
Q 000701 605 MINSDIV--KLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 605 l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 658 (1344)
++.|+++ -+|..|-+|..|..|+|+.| .++.+|.+ +..-+++-.|++++|.+
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEcccCcc
Confidence 7766554 46666666777777777766 66666665 55556666665555443
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.4e-21 Score=212.89 Aligned_cols=260 Identities=17% Similarity=0.266 Sum_probs=188.3
Q ss_pred EEEecCCCC--CCCCCC-CCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCC
Q 000701 509 ISIIDSSIP--ELPEGL-EYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQ 585 (1344)
Q Consensus 509 ls~~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~ 585 (1344)
+.+.+|... .+|... .+++++-|.+.... ...+|... +.+.+|..|.+++|++..+-..+..|+.||.+.++.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~---L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK---LEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhh---hhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 666676654 456553 67888888875443 56788775 899999999999999988888899999999999999
Q ss_pred CCCCC--c-cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEccccccccee
Q 000701 586 SMLGD--I-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEV 662 (1344)
Q Consensus 586 ~~i~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 662 (1344)
|++.. + +.|..|..|.+|||++|.+.+.|..+..-+++-.|+|++| ++..+|...+-+|+.|-.|++++|.+
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL---- 162 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL---- 162 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh----
Confidence 98764 4 8899999999999999999999999999999999999999 89999999889999999999999876
Q ss_pred ccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeecccc
Q 000701 663 RGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSC 742 (1344)
Q Consensus 663 ~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L 742 (1344)
...+..+..|.+|+.|.+++|....+.- ..+.++++|
T Consensus 163 --------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-----------------------------------rQLPsmtsL 199 (1255)
T KOG0444|consen 163 --------EMLPPQIRRLSMLQTLKLSNNPLNHFQL-----------------------------------RQLPSMTSL 199 (1255)
T ss_pred --------hhcCHHHHHHhhhhhhhcCCChhhHHHH-----------------------------------hcCccchhh
Confidence 2334456777788888888876532210 001123344
Q ss_pred ceeecccccc-chhhccCCCcccccccccEEEEccCcCChhhhhhhhhccCCCccEEEEccCcchhhhcccccccccccC
Q 000701 743 KTLTLYNLIN-LERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADINNN 821 (1344)
Q Consensus 743 ~~L~l~~~~~-l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 821 (1344)
+.|++++... +..+ |.+...+.+|..++++.+ ++..+| ..+-++++|+.|+|+++. ++++...
T Consensus 200 ~vLhms~TqRTl~N~---Ptsld~l~NL~dvDlS~N-~Lp~vP--ecly~l~~LrrLNLS~N~-iteL~~~--------- 263 (1255)
T KOG0444|consen 200 SVLHMSNTQRTLDNI---PTSLDDLHNLRDVDLSEN-NLPIVP--ECLYKLRNLRRLNLSGNK-ITELNMT--------- 263 (1255)
T ss_pred hhhhcccccchhhcC---CCchhhhhhhhhcccccc-CCCcch--HHHhhhhhhheeccCcCc-eeeeecc---------
Confidence 4444444221 1112 455567778888888764 455555 456778888888888743 4444332
Q ss_pred CccccccccccceEecCCC
Q 000701 822 NAIEKTDFAELKSLSLGNL 840 (1344)
Q Consensus 822 ~~~~~~~~~~L~~L~l~~~ 840 (1344)
.....+|++|++++.
T Consensus 264 ----~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 264 ----EGEWENLETLNLSRN 278 (1255)
T ss_pred ----HHHHhhhhhhccccc
Confidence 113456666666654
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=1e-15 Score=161.36 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=98.9
Q ss_pred cccccHHHHhcCCcceEEEeCCCCCCcC-CcccccCCCCcEEEcCC-CCCCCc--cccccccccceeecccCCCcccC-h
Q 000701 541 EINISKSFFKEMRMLRVVGFSKMQLSSL-PSSMDLLVNLQTLSLDQ-SMLGDI--AIIGKLKNLEILSMINSDIVKLP-E 615 (1344)
Q Consensus 541 ~~~l~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~l--~~i~~L~~L~~L~l~~~~l~~lp-~ 615 (1344)
+..||+.+|+.++.||.|||++|+|+.+ |+.|..|+.|-.|.+.+ |.|+++ ..|++|..|+.|.+.-|++..++ .
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 6788999999999999999999999887 88899999988887777 789888 66999999999999888888766 5
Q ss_pred hhhccCcccEEeccccccccccChhhhccCCcCCEEEccccc
Q 000701 616 AFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCF 657 (1344)
Q Consensus 616 ~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 657 (1344)
.+..|++|..|.+..| .+..++.+.+..+..++++++..+.
T Consensus 159 al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 6888999999999888 7888888778888888888876554
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.7e-15 Score=138.31 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=136.0
Q ss_pred CCCCCCCCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccc
Q 000701 517 PELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIG 595 (1344)
Q Consensus 517 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~ 595 (1344)
.+++....+++...|.+.++. .+.+|+.+ ..+++|.+|++++|.|+++|.+++.+..||.|++.-|.+..+ ..||
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK---l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK---LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCc---eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345555566777777776665 57778776 789999999999999999999999999999999998887776 8899
Q ss_pred cccccceeecccCCCc--ccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccc
Q 000701 596 KLKNLEILSMINSDIV--KLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAG 673 (1344)
Q Consensus 596 ~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 673 (1344)
.+.-|++||+..|++. .+|..|--+..|+.|+++.| ..+.+|++ +++|++||.|.+..|.+ -..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl------------l~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL------------LSL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch------------hhC
Confidence 9999999999988664 68888888888999999988 78888887 79999999998887754 234
Q ss_pred hhhhcCCCCCcEEEEEeCCCCCCCCcc
Q 000701 674 LDELMHLPRLTSLEIDIGNDDILPEGF 700 (1344)
Q Consensus 674 l~~L~~l~~L~~L~l~~~~~~~~~~~~ 700 (1344)
+.+++.+++|+.|.|.+|....+|.++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 567888889999999999888888754
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=9.8e-13 Score=160.09 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=81.6
Q ss_pred CcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhhhccCcccEEeccccc
Q 000701 553 RMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCF 632 (1344)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 632 (1344)
..-.+|+++++.++.+|+.+. .+|+.|++.+|.++.++.. +.+|++|++++|.++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 346678888888888888775 4788888888888877532 57888888888888888753 457888888887
Q ss_pred cccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCC
Q 000701 633 QLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILP 697 (1344)
Q Consensus 633 ~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~ 697 (1344)
.+..+|.. ..+|+.|++++|.+.... . ..++|+.|++++|.+..+|
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP-------------~--~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQLTSLP-------------V--LPPGLQELSVSDNQLASLP 318 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCcccccc-------------c--cccccceeECCCCccccCC
Confidence 67766652 256777777777552110 0 1246777777776655444
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=4.6e-11 Score=158.37 Aligned_cols=296 Identities=16% Similarity=0.207 Sum_probs=186.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC-CCCHHHHHHHHH
Q 000701 148 SSTGYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ-TPNIKDIQKEIA 226 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 226 (1344)
||.....++-|..-.+.+.+ ....+++.|+|++|.||||++.++... ++.++|+++.. ..++..+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 34445567888765555532 245789999999999999999998852 22589999974 446667777777
Q ss_pred HHhcccccc--------------ccHHHHHHHHHHHHHc-CCeEEEEEeCCCCccc--cc-cccCcCCCCCCceEEEEEe
Q 000701 227 EKLGLILHE--------------ETVSRRASRLYERLKE-EKKILVVLDNLWKCLN--LE-TVGIPYGDDHKGCKILLTS 288 (1344)
Q Consensus 227 ~~l~~~~~~--------------~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~--~~-~l~~~l~~~~~~~~iivTt 288 (1344)
..++..... ......+..+...+.. +.+++|||||+...++ .. .+...+....++.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 666421111 1112233344444443 6889999999977632 12 2222222234567898999
Q ss_pred cChHHH---HhhCCCCcEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHH
Q 000701 289 RDRSVL---LKMGSAPPFLIG----VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMR 361 (1344)
Q Consensus 289 R~~~v~---~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~ 361 (1344)
|...-. ...-.....+++ +|+.+|+.++|....+.... .+.+.+|.+.|+|.|+++..++..++.....
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 974211 111112345565 89999999999988764432 3457889999999999999988777533210
Q ss_pred HHHHHHHHhcCCCCCCcccchHHHHHHHHH-HHhcCCChhHHHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHH
Q 000701 362 EWKNALQQLRAPSSVNFEGISAEAYSAIDL-SIKYLRGDKLRKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADAR 440 (1344)
Q Consensus 362 ~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~ 440 (1344)
.......+.. .....+...+.- .++.||+ ..++.+...|+++ .++.+.+..+. +.. +.
T Consensus 236 -~~~~~~~~~~-------~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~~~~~l~~~l~-------~~~---~~- 294 (903)
T PRK04841 236 -LHDSARRLAG-------INASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-SMNDALIVRVT-------GEE---NG- 294 (903)
T ss_pred -hhhhhHhhcC-------CCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-cCCHHHHHHHc-------CCC---cH-
Confidence 0111111100 011234444433 3789997 6999999999997 56654333221 111 11
Q ss_pred HHHHHHHHHHhhccccee-c-CCCCcEEEcHHHHHHHHHhhc
Q 000701 441 IKLDALVQELRDSSLLLA-G-DNNEELSMHDIVRDVATSTAC 480 (1344)
Q Consensus 441 ~~~~~~l~~L~~~~ll~~-~-~~~~~~~~h~lv~~~~~~~~~ 480 (1344)
...+++|.+++++.. . +...+|+.|++++++++....
T Consensus 295 ---~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 ---QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ---HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 236889999999753 3 344589999999999998763
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=6.4e-12 Score=153.09 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=44.0
Q ss_pred cceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhhhccCcccEEecccccc
Q 000701 554 MLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQ 633 (1344)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 633 (1344)
+|+.|++++|+++.+|.. +++|++|++++|.++.++.. ..+|+.|++++|.+..+|.. ..+|+.|++++| .
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N-~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN-Q 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEECcCC-c
Confidence 455555555555555431 34555555555555444221 23555555555555544432 134445555555 4
Q ss_pred ccccChhhhccCCcCCEEEcccccc
Q 000701 634 LKVIAPNVLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 634 l~~~~~~~l~~L~~L~~L~l~~~~~ 658 (1344)
++.+|.. +.+|+.|++++|.+
T Consensus 294 Lt~LP~~----p~~L~~LdLS~N~L 314 (788)
T PRK15387 294 LTSLPVL----PPGLQELSVSDNQL 314 (788)
T ss_pred ccccccc----ccccceeECCCCcc
Confidence 5444431 24455555555433
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-12 Score=160.60 Aligned_cols=266 Identities=22% Similarity=0.307 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCC--CCcCCcc-cccCCCCcEEEcCCC-CCCC
Q 000701 515 SIPELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQ--LSSLPSS-MDLLVNLQTLSLDQS-MLGD 590 (1344)
Q Consensus 515 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~--i~~lp~~-i~~L~~Lr~L~L~~~-~i~~ 590 (1344)
.....|........|.+.+.++.. ..++.. ...+.|++|-+.+|. +..++.. |..+++||+|||++| .+..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~---~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKI---EHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred CccccccccchhheeEEEEeccch---hhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 344456666778888888877763 344443 244579999999886 6666554 778999999999988 5677
Q ss_pred c-cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccc
Q 000701 591 I-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTER 669 (1344)
Q Consensus 591 l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 669 (1344)
+ .+|++|.|||||+++++.+..+|.++++|.+|++|++..+..+..+| +++..|.+|++|.+..... ..
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~---------~~ 656 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL---------SN 656 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc---------cc
Confidence 7 88999999999999999999999999999999999999987676664 4467799999999866431 12
Q ss_pred cccchhhhcCCCCCcEEEEEeCCCCCCCCccccccCceeEEEecCCCCCCcccceeccccccCccceeeccccceeeccc
Q 000701 670 SCAGLDELMHLPRLTSLEIDIGNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYN 749 (1344)
Q Consensus 670 ~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~ 749 (1344)
+...+.++..+.+|+.+.++......+........|.++ .+.+.+.+
T Consensus 657 ~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~---------------------------------~~~l~~~~ 703 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL---------------------------------LQSLSIEG 703 (889)
T ss_pred chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH---------------------------------hHhhhhcc
Confidence 455667778888888777754432100000011111111 11122222
Q ss_pred cccchhhccCCCcccccccccEEEEccCcCChhhh-hhh--hhc-cCCCccEEEEccCcchhhhcccccccccccCCccc
Q 000701 750 LINLERICSDPLKVESFNELRTMKIENCDKLSNIF-LLS--ATN-CLPGLERIAVIDCSNMEEIFAVSGEADINNNNAIE 825 (1344)
Q Consensus 750 ~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~--~l~-~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 825 (1344)
+.. .........+.+|+.|.+.+|....... +.. ... .++++..+.+.+|..+.....
T Consensus 704 ~~~----~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-------------- 765 (889)
T KOG4658|consen 704 CSK----RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-------------- 765 (889)
T ss_pred ccc----ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch--------------
Confidence 111 1113455678999999999997643221 000 011 256677777777766555432
Q ss_pred cccccccceEecCCCCccccc
Q 000701 826 KTDFAELKSLSLGNLPKLSSF 846 (1344)
Q Consensus 826 ~~~~~~L~~L~l~~~~~L~~~ 846 (1344)
....|+|+.|.+..|+.++..
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred hhccCcccEEEEecccccccC
Confidence 134788999999998877765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1.3e-11 Score=151.75 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhccCcccEEecccccc
Q 000701 555 LRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQ 633 (1344)
Q Consensus 555 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 633 (1344)
...|+++++.++.+|..+. .+|+.|+|++|.++.+ ..+. .+|++|++++|.++.+|..+. .+|+.|++++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-c
Confidence 3445555555555554332 3455555555555444 2222 345555555555555554332 24555555555 4
Q ss_pred ccccChhhhccCCcCCEEEccccc
Q 000701 634 LKVIAPNVLSSLIRLEELYMRNCF 657 (1344)
Q Consensus 634 l~~~~~~~l~~L~~L~~L~l~~~~ 657 (1344)
+..+|.. +. .+|+.|++++|.
T Consensus 253 L~~LP~~-l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 253 ITELPER-LP--SALQSLDLFHNK 273 (754)
T ss_pred cCcCChh-Hh--CCCCEEECcCCc
Confidence 4445443 22 345555554443
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=1.2e-09 Score=129.12 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=171.7
Q ss_pred CcccccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
.++.++||++++++|...+. ....+.+.|+|++|+|||++++.++++.......-.++++++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45679999999999999985 23456789999999999999999999887554334567888887788889999999
Q ss_pred HHhccc-cc--cccHHHHHHHHHHHHHc-CCeEEEEEeCCCCcc------ccccccCcCCCCCC--ceEEEEEecChHHH
Q 000701 227 EKLGLI-LH--EETVSRRASRLYERLKE-EKKILVVLDNLWKCL------NLETVGIPYGDDHK--GCKILLTSRDRSVL 294 (1344)
Q Consensus 227 ~~l~~~-~~--~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~l~~~~~--~~~iivTtR~~~v~ 294 (1344)
.+++.. .+ .....+....+.+.+.+ +++.+||+|+++... .+..+...+ ...+ +..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchh
Confidence 998652 11 12334445556666543 567899999998753 122221111 1112 33366666654333
Q ss_pred Hhh-------CCCCcEEccCCCHHHHHHHHHHHhCC-----CCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh-----c
Q 000701 295 LKM-------GSAPPFLIGVLNEEEAWRLFKMTAGD-----DVEHRELNSTARNVAMACGGLPIALTTIARALR-----N 357 (1344)
Q Consensus 295 ~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-----~ 357 (1344)
... -....+.+.+++.++..+++..++.. ...+..++.+++......|..+.|+.++-.... +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 211 11246789999999999999988732 122222333333333334567777777654321 1
Q ss_pred ---CCHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHhcCCChhHHHHHHhcccc-C---CCCChhHHHHHH--Hhhc
Q 000701 358 ---RSMREWKNALQQLRAPSSVNFEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLM-G---NRIATSDLFKYC--MGWG 428 (1344)
Q Consensus 358 ---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f-p---~~i~~~~li~~w--~~~g 428 (1344)
-+.+.+..+.+... .....-.+..||. +.|..+..++.. . ..+....+.+.. ++..
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 15566666665431 1234456788987 444443333322 2 225555555421 1211
Q ss_pred cccccccHHHHHHHHHHHHHHHhhccccee
Q 000701 429 ILKGVNKMADARIKLDALVQELRDSSLLLA 458 (1344)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 458 (1344)
.-.... ....+.++++.|...|+|..
T Consensus 332 ~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 100000 12334568999999999864
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=4.4e-13 Score=124.69 Aligned_cols=145 Identities=23% Similarity=0.374 Sum_probs=121.0
Q ss_pred EEEecCCCCCCCCCC-CCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCC
Q 000701 509 ISIIDSSIPELPEGL-EYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSM 587 (1344)
Q Consensus 509 ls~~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 587 (1344)
+.++.|++..+|..+ .+.+|..|.++++. +.++|.++ +++++||.|+++-|.+..+|..|+.++.|++|+|.+|.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccch---hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 677778887777654 77888888887776 67888876 88899999999988888889999999999999999887
Q ss_pred CCC--c-cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEccccccc
Q 000701 588 LGD--I-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQ 659 (1344)
Q Consensus 588 i~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 659 (1344)
+.+ + ..|..+..|+-|.++.|.+.-+|..+++|++||.|.+..| .+-.+|.+ ++.|+.|++|++.+|.+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence 654 3 6788888889999999888889988999999999999888 67778887 799999999988888663
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3e-11 Score=148.58 Aligned_cols=173 Identities=17% Similarity=0.287 Sum_probs=100.1
Q ss_pred EEEecCCCCCCCCCCCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCC
Q 000701 509 ISIIDSSIPELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSML 588 (1344)
Q Consensus 509 ls~~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i 588 (1344)
+.+.+.++..+|... .++++.|.+.++. +..+|..++ ++|++|++++|.++.+|..+. .+|+.|+|++|.+
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~---LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNE---LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCC---CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 555555565665432 2466777766554 456666553 367777777777777766543 3677777777776
Q ss_pred CCc-cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccc
Q 000701 589 GDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNT 667 (1344)
Q Consensus 589 ~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 667 (1344)
..+ ..+. .+|++|++++|.+..+|..+. .+|++|++++| .++.+|.. +. .+|+.|++++|.+....
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP----- 320 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTALP----- 320 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccCC-----
Confidence 665 3332 467777777777776766543 46777777776 66666654 22 35666666666542110
Q ss_pred cccccchhhhcCCCCCcEEEEEeCCCCCCCCccccccCceeEEEec
Q 000701 668 ERSCAGLDELMHLPRLTSLEIDIGNDDILPEGFFSRRLENFKISVG 713 (1344)
Q Consensus 668 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 713 (1344)
..+ .++|+.|++++|....+|..+. ++|+.|++..|
T Consensus 321 -------~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N 356 (754)
T PRK15370 321 -------ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKN 356 (754)
T ss_pred -------ccc--cccceeccccCCccccCChhhc-CcccEEECCCC
Confidence 011 1356666666666555554332 35555555443
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.19 E-value=1.1e-09 Score=128.78 Aligned_cols=293 Identities=20% Similarity=0.219 Sum_probs=188.8
Q ss_pred CcccccchHHHHHHHHHHHH-cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALT-NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEK 228 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 228 (1344)
.+...+-|..- .+.|. ..+.+.+.|..|+|.||||++.+++.... .-..|.|.++++. .++..+.+.++..
T Consensus 17 ~~~~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 17 RPDNYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CcccccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHH
Confidence 34556666554 44444 34789999999999999999999987332 2356899999865 4688888888888
Q ss_pred hcccccccc--------------HHHHHHHHHHHHHc-CCeEEEEEeCCCCcc--cc-ccccCcCCCCCCceEEEEEecC
Q 000701 229 LGLILHEET--------------VSRRASRLYERLKE-EKKILVVLDNLWKCL--NL-ETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 229 l~~~~~~~~--------------~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~--~~-~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
++...+... .......++..+.+ .++..+|+||-.-.. .. ..+...+....++..+|||||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 874333322 12233444444432 578999999976542 22 2222233344578899999998
Q ss_pred hHHHHhh--C-CCCcEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh-cCCHHH
Q 000701 291 RSVLLKM--G-SAPPFLIG----VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALR-NRSMRE 362 (1344)
Q Consensus 291 ~~v~~~~--~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~~~ 362 (1344)
..-.... . ....++++ .++.+|+.++|....+...+. ...+.+.+..+|.+-|+..++=.++ +.+.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 7433211 0 11223332 388999999999987654443 3377899999999999999998887 334333
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHH-HHHHHhcCCChhHHHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHHH
Q 000701 363 WKNALQQLRAPSSVNFEGISAEAYSA-IDLSIKYLRGDKLRKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADARI 441 (1344)
Q Consensus 363 w~~~l~~l~~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~ 441 (1344)
-...++ +..+.+..- ..--++.||+ .+|..+.-||+++.- -+.|+.-- .+ ++
T Consensus 246 ~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f--~~eL~~~L------tg----~~--- 298 (894)
T COG2909 246 SLRGLS-----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF--NDELCNAL------TG----EE--- 298 (894)
T ss_pred Hhhhcc-----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh--hHHHHHHH------hc----CC---
Confidence 332222 112223222 2334678998 699999999999751 01222110 01 11
Q ss_pred HHHHHHHHHhhccccee--cCCCCcEEEcHHHHHHHHHhhcc
Q 000701 442 KLDALVQELRDSSLLLA--GDNNEELSMHDIVRDVATSTACH 481 (1344)
Q Consensus 442 ~~~~~l~~L~~~~ll~~--~~~~~~~~~h~lv~~~~~~~~~~ 481 (1344)
.+...+++|.+++|+.. ++...+|+.|.+..||.+.--..
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 12347899999999864 36778999999999999876554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.19 E-value=5.8e-13 Score=142.32 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=21.6
Q ss_pred ccccccEEEEcccCCcccccchhhhhchhccCeEeeccccccc
Q 000701 921 GFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLE 963 (1344)
Q Consensus 921 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~ 963 (1344)
.+++|++|++..|..++...-......+++|++|+++.|+.+.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence 3455555555555555544222233445555555555555443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=5.5e-13 Score=142.49 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=61.6
Q ss_pred cccccccccc-cceecccCCCCCCccccccccEEEEcccCCcccccchhhhhchhccCeEeecccccccceecccccccc
Q 000701 896 NLEALELYKI-NLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKV 974 (1344)
Q Consensus 896 ~L~~L~L~~~-~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~ 974 (1344)
.|++|.+.|+ .... .++-....++|+++.|.+.+|.++++..-......++.|++|++..|..++......
T Consensus 139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~----- 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY----- 210 (483)
T ss_pred ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----
Confidence 4677777777 2222 222223346777777777777777664333444556677777777777666443211
Q ss_pred CCeeecccccceecccccccccccCcccccCCCCcceeEeecCCC
Q 000701 975 NPCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDK 1019 (1344)
Q Consensus 975 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 1019 (1344)
....+++|++|.++.|+.++.-........+..++.+...||..
T Consensus 211 -la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 211 -LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE 254 (483)
T ss_pred -HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence 11236666666666666655422111123344444444444443
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.14 E-value=1.1e-10 Score=127.65 Aligned_cols=193 Identities=24% Similarity=0.347 Sum_probs=106.6
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH---------HH
Q 000701 155 FESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK---------EI 225 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i 225 (1344)
|+||++|+++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+...+......+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 799999999999999887788999999999999999999999874321 1 344444433332222111 11
Q ss_pred HHHhccccc-----------cccHHHHHHHHHHHHHc-CCeEEEEEeCCCCcc-ccc-------cc---cCcCCCCCCce
Q 000701 226 AEKLGLILH-----------EETVSRRASRLYERLKE-EKKILVVLDNLWKCL-NLE-------TV---GIPYGDDHKGC 282 (1344)
Q Consensus 226 ~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~-~~~-------~l---~~~l~~~~~~~ 282 (1344)
.+.++.... ..........+.+.+.+ +++.+||+||+.... ... .+ ...... ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 222221111 12223445556666653 455999999997665 111 11 111112 2334
Q ss_pred EEEEEecChHHHHh--------hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 283 KILLTSRDRSVLLK--------MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 283 ~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
.+|+++........ .+....+.+++|+.+++++++...+.....-+..+...++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554444432 233345999999999999999998743311112345579999999999998764
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=8.4e-09 Score=114.99 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=117.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHH---
Q 000701 171 NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYE--- 247 (1344)
Q Consensus 171 ~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~--- 247 (1344)
....++++|+|++|+||||+++.+++...... . .++|+ +....+..+++..|+..++..............+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998775321 1 22333 233457788999999988876544333333333332
Q ss_pred -HHHcCCeEEEEEeCCCCcc--ccccccC---cCCCCCCceEEEEEecChHHHHh---------hCCCCcEEccCCCHHH
Q 000701 248 -RLKEEKKILVVLDNLWKCL--NLETVGI---PYGDDHKGCKILLTSRDRSVLLK---------MGSAPPFLIGVLNEEE 312 (1344)
Q Consensus 248 -~l~~~~~~LlvlDdv~~~~--~~~~l~~---~l~~~~~~~~iivTtR~~~v~~~---------~~~~~~~~l~~L~~~e 312 (1344)
....+++.++|+||++... .++.+.. .-........|++|......... ......+++.+++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2335788999999998864 3343321 11112233456666654321110 0123467899999999
Q ss_pred HHHHHHHHhCCC---CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000701 313 AWRLFKMTAGDD---VEHRELNSTARNVAMACGGLPIALTTIARAL 355 (1344)
Q Consensus 313 ~~~lf~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 355 (1344)
..+++...+... ....-.++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998877321 1122235788999999999999999988776
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-11 Score=131.33 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=149.2
Q ss_pred EecCCCCCCCCchhhhcceeEEEEecCCCCCCCCC--CCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCC-CC
Q 000701 488 VRDENVWGWPDDEDALEKYYAISIIDSSIPELPEG--LEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSK-MQ 564 (1344)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~-~~ 564 (1344)
.+..+..+.|. +.+..... +.++.|.|..+|.. ..+++||.|++..+. +..|.++.|.+++.|..|-+.+ |.
T Consensus 53 Cr~~GL~eVP~-~LP~~tve-irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 53 CRGKGLTEVPA-NLPPETVE-IRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ccCCCcccCcc-cCCCcceE-EEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCc
Confidence 45555555554 23334444 88899999999976 488999999998776 7889999999999987776665 88
Q ss_pred CCcCCc-ccccCCCCcEEEcCCCCCCCc--cccccccccceeecccCCCcccCh-hhhccCcccEEeccccccc------
Q 000701 565 LSSLPS-SMDLLVNLQTLSLDQSMLGDI--AIIGKLKNLEILSMINSDIVKLPE-AFGLLTKLRLLDLTDCFQL------ 634 (1344)
Q Consensus 565 i~~lp~-~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l------ 634 (1344)
|+++|. .|++|..|+-|.+.-|.+.-+ ..+..|++|..|.+..|.+..++. .+..+..++++++..+..+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 999984 599999999999999998887 779999999999999999998886 7889999999988776411
Q ss_pred ------cccChhhhccCCcCCEEEcccccccceecc-----------c---cc-cccccchhhhcCCCCCcEEEEEeCCC
Q 000701 635 ------KVIAPNVLSSLIRLEELYMRNCFVQWEVRG-----------V---NT-ERSCAGLDELMHLPRLTSLEIDIGND 693 (1344)
Q Consensus 635 ------~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~-----------~---~~-~~~~~~l~~L~~l~~L~~L~l~~~~~ 693 (1344)
...|.. ++..+-..-..+....+...... . .. .....-...++.|++|+.|++++|.+
T Consensus 208 wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 208 WLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111111 22222221111111111110000 0 00 00111123477888899999998887
Q ss_pred CCCCCc-c-ccccCceeEEEecC
Q 000701 694 DILPEG-F-FSRRLENFKISVGD 714 (1344)
Q Consensus 694 ~~~~~~-~-~~~~L~~L~l~~~~ 714 (1344)
..+... + ...+++.|.+..+.
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcch
Confidence 765543 3 55677777665543
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=3e-08 Score=116.04 Aligned_cols=290 Identities=17% Similarity=0.179 Sum_probs=168.8
Q ss_pred CcccccchHHHHHHHHHHHHc----CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC-C---CEEEEEEcCCCCCHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTN----ANAGIIGVYGMGGIGKTTLVKAVARQAKERKL-F---DQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~----~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~-f---~~~~wv~~~~~~~~~~~~ 222 (1344)
.++.++||++++++|..++.. ...+.+.|+|++|+|||++++.+++....... . -.++|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 345799999999999999872 44568999999999999999999987653211 1 246788888877888999
Q ss_pred HHHHHHh---cccccc--ccHHHHHHHHHHHHH-cCCeEEEEEeCCCCcc-c----cccccCcC-CCC--CCceEEEEEe
Q 000701 223 KEIAEKL---GLILHE--ETVSRRASRLYERLK-EEKKILVVLDNLWKCL-N----LETVGIPY-GDD--HKGCKILLTS 288 (1344)
Q Consensus 223 ~~i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~----~~~l~~~l-~~~--~~~~~iivTt 288 (1344)
..|+.++ +...+. .+..+....+.+.+. .+++++||+|+++... . +..+.... ... .....+|+++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999988 332221 223344455556554 3567899999998772 1 11111110 111 1334455555
Q ss_pred cChHHHH----hh-C--CCCcEEccCCCHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH-
Q 000701 289 RDRSVLL----KM-G--SAPPFLIGVLNEEEAWRLFKMTAGD----DVEHRELNSTARNVAMACGGLPI-ALTTIARAL- 355 (1344)
Q Consensus 289 R~~~v~~----~~-~--~~~~~~l~~L~~~e~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l- 355 (1344)
+...... .. . ....+.+.+++.+|..++++.++.. ..-.++.-+.+..++....|.|- |+.++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433221 11 1 1246889999999999999988731 11122222345556777778874 433332221
Q ss_pred -h---c---CCHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHhcCCChhHHHHHHhcccc---C-CCCChhHHHHHH
Q 000701 356 -R---N---RSMREWKNALQQLRAPSSVNFEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLM---G-NRIATSDLFKYC 424 (1344)
Q Consensus 356 -~---~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f---p-~~i~~~~li~~w 424 (1344)
+ + -+.+..+.+.+.+. .....-.+..||. +.+..+..++.. . ..+...++...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 1 24555555554321 1233456678886 455444443321 1 126666666532
Q ss_pred H--hhccccccccHHHHHHHHHHHHHHHhhcccceec
Q 000701 425 M--GWGILKGVNKMADARIKLDALVQELRDSSLLLAG 459 (1344)
Q Consensus 425 ~--~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 459 (1344)
- ++.+ .. ..-....+.++++.|...|++...
T Consensus 318 ~~~~~~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 318 KEVCEDI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 1111 00 011123455688999999998653
No 32
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.8e-09 Score=109.34 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----CEEEEEEcCCCCCHH---HHHHHHHHHhccccccccHHHHHHHHHH
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLF----DQVVFSEVSQTPNIK---DIQKEIAEKLGLILHEETVSRRASRLYE 247 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 247 (1344)
+++.|+|.+|+||||+++.++......... ..++|+......... .+...|........... .. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI--EE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh--HH---HHHH
Confidence 589999999999999999999988766543 456677766544332 34444444332211111 11 2223
Q ss_pred HHHcCCeEEEEEeCCCCccc---------cccccCcCCCC--CCceEEEEEecChHHHH---hhCCCCcEEccCCCHHHH
Q 000701 248 RLKEEKKILVVLDNLWKCLN---------LETVGIPYGDD--HKGCKILLTSRDRSVLL---KMGSAPPFLIGVLNEEEA 313 (1344)
Q Consensus 248 ~l~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~--~~~~~iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~ 313 (1344)
...+.+++++|+|++++... +..+...+... .++++++||+|...... .......+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33358999999999987633 11222222222 56899999999876632 344556899999999999
Q ss_pred HHHHHHHhC
Q 000701 314 WRLFKMTAG 322 (1344)
Q Consensus 314 ~~lf~~~~~ 322 (1344)
.+++++.+.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988763
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.87 E-value=1.5e-07 Score=106.96 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=143.8
Q ss_pred ccccchHHHHHHHHHHHH-----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT-----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
..|+|+++.++.|..++. ....+.+.++|++|+|||++|+.+++..... + ..+..+.......+. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHH
Confidence 469999999999998886 2345678999999999999999999877532 2 122222112222222 2222
Q ss_pred Hhcccc----cc--ccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHHhh--CC
Q 000701 228 KLGLIL----HE--ETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLKM--GS 299 (1344)
Q Consensus 228 ~l~~~~----~~--~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~--~~ 299 (1344)
.++... ++ .-.....+.+...+ .+.+..+|+|+..+...+.. .+ .+.+-|..||+...+.... ..
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 222110 00 00011112222222 24455566666555444331 11 1345566677765443321 12
Q ss_pred CCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCcc
Q 000701 300 APPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLRAPSSVNFE 379 (1344)
Q Consensus 300 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~ 379 (1344)
...+++++++.++..+++.+.++.... .-.++.+..|++.|+|.|-.+..+...+ |..+.. ....... .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~--~~~~~it-~ 219 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV--RGQKIIN-R 219 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH--cCCCCcC-H
Confidence 346789999999999999988853222 1224567889999999997665444322 211100 0000000 0
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHHH-hccccCCC-CChhHHHHHHHhhccccccccHHHHHHHHHHHHH-HHhhcccc
Q 000701 380 GISAEAYSAIDLSIKYLRGDKLRKILL-LCSLMGNR-IATSDLFKYCMGWGILKGVNKMADARIKLDALVQ-ELRDSSLL 456 (1344)
Q Consensus 380 ~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~-i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll 456 (1344)
..-......+...|..+++ +.+..+. ..+.++.+ +..+.+.... |. +... ....++ .|++++|+
T Consensus 220 ~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~~~~----~~~~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGGPVGLKTLAAAL---GE-----DADT----IEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCCcccHHHHHHHh---CC-----Ccch----HHHhhhHHHHHcCCc
Confidence 0111222224555667775 4555554 55666543 5555444331 11 1111 223467 59999999
Q ss_pred eec
Q 000701 457 LAG 459 (1344)
Q Consensus 457 ~~~ 459 (1344)
...
T Consensus 287 ~~~ 289 (305)
T TIGR00635 287 QRT 289 (305)
T ss_pred ccC
Confidence 654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.3e-09 Score=106.82 Aligned_cols=130 Identities=23% Similarity=0.272 Sum_probs=49.1
Q ss_pred hcCCcceEEEeCCCCCCcCCcccc-cCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhh-hccCcccEEe
Q 000701 550 KEMRMLRVVGFSKMQLSSLPSSMD-LLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAF-GLLTKLRLLD 627 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 627 (1344)
.+...+|.|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.++.+..+.+|++|++++|.++.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 35556788888888888774 355 57788888888888888888888888888888888888887655 4688888888
Q ss_pred ccccccccccCh-hhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEE
Q 000701 628 LTDCFQLKVIAP-NVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEID 689 (1344)
Q Consensus 628 l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~ 689 (1344)
+++| .+..+.. ..++.+++|+.|++.+|.+... ......-+..+++|+.||-.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK--------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS--------TTHHHHHHHH-TT-SEETTE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccch--------hhHHHHHHHHcChhheeCCE
Confidence 8887 5554432 2267778888888888766311 22233345667777777654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=1.5e-09 Score=108.08 Aligned_cols=124 Identities=26% Similarity=0.397 Sum_probs=47.0
Q ss_pred eCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccc-cccccceeecccCCCcccChhhhccCcccEEeccccccccccC
Q 000701 560 FSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIG-KLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIA 638 (1344)
Q Consensus 560 L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~ 638 (1344)
|..+.|...|. +.+..+++.|+|++|.|+.++.++ .+.+|+.|++++|.++.++ .+..+++|++|++++| .++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccc
Confidence 44455666654 566778999999999999998888 6899999999999999886 4888999999999999 898887
Q ss_pred hhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCC
Q 000701 639 PNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDIL 696 (1344)
Q Consensus 639 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 696 (1344)
.+....+++|++|++++|.+. .-..+..|+.+++|+.|++.+|++...
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HHHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred cchHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccch
Confidence 663357999999999999873 234467788999999999999877543
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=9.8e-07 Score=105.13 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=126.3
Q ss_pred CcccccchHHHHHHHHHHHHc-----CCCeEEEEEcCCCCcHHHHHHHHHHHHhhc---CCCC--EEEEEEcCCCCCHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTN-----ANAGIIGVYGMGGIGKTTLVKAVARQAKER---KLFD--QVVFSEVSQTPNIKD 220 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~-----~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~ 220 (1344)
.++.+.||++|+++|...|.. +...++.|+|++|+|||+.++.|...+... ...+ .+++|++....++..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 346788999999999988862 223567899999999999999999876532 1222 367888888788999
Q ss_pred HHHHHHHHhccccccc--cHHHHHHHHHHHHHc--CCeEEEEEeCCCCccc--cccccCcCC-CCCCceEEEE--EecCh
Q 000701 221 IQKEIAEKLGLILHEE--TVSRRASRLYERLKE--EKKILVVLDNLWKCLN--LETVGIPYG-DDHKGCKILL--TSRDR 291 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~~--~~~l~~~l~-~~~~~~~iiv--TtR~~ 291 (1344)
++..|..++....+.. ...+....++..+.. +...+||||+++.... =+.+...+. ....+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999998885433221 223344555555422 2346899999986531 011111111 1123444433 34321
Q ss_pred HH--------HHhhCCCCcEEccCCCHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 000701 292 SV--------LLKMGSAPPFLIGVLNEEEAWRLFKMTAGD---DVEHRELNSTARNVAMACGGLPIALTTIARALR 356 (1344)
Q Consensus 292 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 356 (1344)
.. ...++ ...+...|++.++..+++..++.. ...+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 11222 234677999999999999999852 223344444555555555566677776665554
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=1.7e-07 Score=106.94 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=143.1
Q ss_pred CcccccchHHHHHHHHHHHH-----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALT-----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
..+.|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++..+. ......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHH
Confidence 34679999999999888775 2335678999999999999999999987632 1 1222221 1111122222
Q ss_pred HHHhcccc----cc-cc-HHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHHhh--
Q 000701 226 AEKLGLIL----HE-ET-VSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLKM-- 297 (1344)
Q Consensus 226 ~~~l~~~~----~~-~~-~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~-- 297 (1344)
+..++... ++ .. .....+.+...+ .+.+..+|+|+..+...+.. .+ .+.+-|..|+|...+....
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHH
Confidence 22222100 00 00 000111111222 23444555555443322211 11 1234566677754333321
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLRAPSSVN 377 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~ 377 (1344)
.....+++++++.++..+++.+.++..... -.++.+..|++.|+|.|-.+..+...+. .|.... ......
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~----~~~~I~ 239 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK----GDGVIT 239 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc----CCCCCC
Confidence 123468999999999999999988543221 2245688999999999965444443221 121111 000000
Q ss_pred cccchHHHHHHHHHHHhcCCChhHHHHHH-hccccCCC-CChhHHHHHHHhhccccccccHHHHHHHHHHHHH-HHhhcc
Q 000701 378 FEGISAEAYSAIDLSIKYLRGDKLRKILL-LCSLMGNR-IATSDLFKYCMGWGILKGVNKMADARIKLDALVQ-ELRDSS 454 (1344)
Q Consensus 378 ~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~-i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ 454 (1344)
. ..-......+...+..|++ ..+..+. ....|+.+ +..+.+.... -....+.++ .++ .|++.+
T Consensus 240 ~-~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~~a~~l-----g~~~~~~~~-------~~e~~Li~~~ 305 (328)
T PRK00080 240 K-EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGGPVGLDTLAAAL-----GEERDTIED-------VYEPYLIQQG 305 (328)
T ss_pred H-HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCCceeHHHHHHHH-----CCCcchHHH-------HhhHHHHHcC
Confidence 0 1112233444555667776 4555554 66667664 6666654432 111112221 345 788899
Q ss_pred cceecC
Q 000701 455 LLLAGD 460 (1344)
Q Consensus 455 ll~~~~ 460 (1344)
|++..+
T Consensus 306 li~~~~ 311 (328)
T PRK00080 306 FIQRTP 311 (328)
T ss_pred CcccCC
Confidence 997553
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=3.5e-07 Score=115.57 Aligned_cols=306 Identities=17% Similarity=0.203 Sum_probs=178.5
Q ss_pred cccchHHHHHHHHHHHH---cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEE---EEEcCCCCC---HHHHHHH
Q 000701 154 AFESRFSTLRDIRNALT---NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVV---FSEVSQTPN---IKDIQKE 224 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~---~~~~~~~ 224 (1344)
.++||+.+++.|...+. .+...++.+.|.+|+|||+++++|......+ +...+ +-....... ..+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHH
Confidence 36899999999999887 4667799999999999999999999877644 21111 111111111 2222333
Q ss_pred HHHHh-------------------cccccc-----------------------ccHHHH-----HHHHHHHHHcCCeEEE
Q 000701 225 IAEKL-------------------GLILHE-----------------------ETVSRR-----ASRLYERLKEEKKILV 257 (1344)
Q Consensus 225 i~~~l-------------------~~~~~~-----------------------~~~~~~-----~~~l~~~l~~~~~~Ll 257 (1344)
++.++ |..... .....+ ...+.....+.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33322 111000 000011 1122222334679999
Q ss_pred EEeCCCCccc-----cccccCcCC---CCCCceEEEEEecCh--HHHHhhCCCCcEEccCCCHHHHHHHHHHHhCCCCCC
Q 000701 258 VLDNLWKCLN-----LETVGIPYG---DDHKGCKILLTSRDR--SVLLKMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEH 327 (1344)
Q Consensus 258 vlDdv~~~~~-----~~~l~~~l~---~~~~~~~iivTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 327 (1344)
|+||+.-.+. .+.+..... ......-.+.|.+.. .+.........+.|.||+..+.-.+.....+.....
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 9999954431 111111110 000112233333333 112223345789999999999999999999763322
Q ss_pred cchHHHHHHHHHHhCCChHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHhcCCChh
Q 000701 328 RELNSTARNVAMACGGLPIALTTIARALRNR-------SMREWKNALQQLRAPSSVNFEGISAEAYSAIDLSIKYLRGDK 400 (1344)
Q Consensus 328 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 400 (1344)
.......|+++..|+|+-+..+-+.+... +...|..-...+.. .+.. +.+...+..-.+.||+ .
T Consensus 239 --~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~-~~vv~~l~~rl~kL~~-~ 309 (849)
T COG3899 239 --PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATT-DAVVEFLAARLQKLPG-T 309 (849)
T ss_pred --cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhh-HHHHHHHHHHHhcCCH-H
Confidence 23567889999999999999998888732 33445433332221 1112 2356668888999997 6
Q ss_pred HHHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhccccee-----cCC-CCc--E-EEcHHH
Q 000701 401 LRKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADARIKLDALVQELRDSSLLLA-----GDN-NEE--L-SMHDIV 471 (1344)
Q Consensus 401 ~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~-----~~~-~~~--~-~~h~lv 471 (1344)
.|+.+...|++...|+.+.|...|.. ........ ..+.|....++.. .+. ... | ..||.|
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~--------~~~~~a~~---l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAED--------SPALEAAA---LLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhh--------chHHHHHH---HHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999999999999999988877632 11222222 3444444444321 111 111 2 469999
Q ss_pred HHHHHHhhcc
Q 000701 472 RDVATSTACH 481 (1344)
Q Consensus 472 ~~~~~~~~~~ 481 (1344)
++.|-....+
T Consensus 379 qqaaY~~i~~ 388 (849)
T COG3899 379 QQAAYNLIPE 388 (849)
T ss_pred HHHHhccCch
Confidence 8888655443
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=1.4e-08 Score=117.02 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=89.9
Q ss_pred HHHhcCCcceEEEeCCCCCC-----cCCcccccCCCCcEEEcCCCCCCC-------c-cccccccccceeecccCCCc-c
Q 000701 547 SFFKEMRMLRVVGFSKMQLS-----SLPSSMDLLVNLQTLSLDQSMLGD-------I-AIIGKLKNLEILSMINSDIV-K 612 (1344)
Q Consensus 547 ~~f~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------l-~~i~~L~~L~~L~l~~~~l~-~ 612 (1344)
.+|..+..|++|+++++.+. .++..+...++|++|+++++.+.. + ..+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 45577777888888888873 356666777778888888876652 1 45667778888888888765 3
Q ss_pred cChhhhccCc---ccEEeccccccccc-----cChhhhccC-CcCCEEEcccccccceeccccccccccchhhhcCCCCC
Q 000701 613 LPEAFGLLTK---LRLLDLTDCFQLKV-----IAPNVLSSL-IRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRL 683 (1344)
Q Consensus 613 lp~~i~~L~~---L~~L~l~~~~~l~~-----~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L 683 (1344)
.+..+..+.+ |++|++++| .+.. +.. .+..+ .+|+.|++++|.+.... .......+..+++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~~~~L 167 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGAS-------CEALAKALRANRDL 167 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchH-------HHHHHHHHHhCCCc
Confidence 4455555555 888888887 4432 111 24555 78888888887663211 11223445666777
Q ss_pred cEEEEEeCCC
Q 000701 684 TSLEIDIGND 693 (1344)
Q Consensus 684 ~~L~l~~~~~ 693 (1344)
+.|+++++..
T Consensus 168 ~~L~l~~n~l 177 (319)
T cd00116 168 KELNLANNGI 177 (319)
T ss_pred CEEECcCCCC
Confidence 8887776654
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.9e-09 Score=109.96 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=114.8
Q ss_pred CcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhhhccCcccEEeccccc
Q 000701 553 RMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCF 632 (1344)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 632 (1344)
+.|..||||+|.|+.+-.++.-++.+|.|++++|.+..+.++..|++|++||+++|.+.++-..-.+|.|.++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N- 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN- 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-
Confidence 5789999999999999888988999999999999999997799999999999999988887776778999999999998
Q ss_pred cccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCC
Q 000701 633 QLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPE 698 (1344)
Q Consensus 633 ~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~ 698 (1344)
.++.+.. +++|-+|..|++++|.+. .-..+..+++++.|+.+.+.+|....++.
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 7888765 889999999999998773 33445678899999999999888766554
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=2.5e-06 Score=100.40 Aligned_cols=191 Identities=17% Similarity=0.202 Sum_probs=113.4
Q ss_pred cccccchHHHHHH---HHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 000701 152 YEAFESRFSTLRD---IRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEK 228 (1344)
Q Consensus 152 ~~~~~gR~~~~~~---l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (1344)
.+.|+|++..+.. +.+++..+..+.+.|+|++|+||||+|+.+++..... | +.++....-....+.+...
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHHHH
Confidence 4568999888666 8888887777889999999999999999999876422 2 2222211111111222111
Q ss_pred hccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEE--EecChHHH--H-hhCCCC
Q 000701 229 LGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILL--TSRDRSVL--L-KMGSAP 301 (1344)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iiv--TtR~~~v~--~-~~~~~~ 301 (1344)
.......+++.+|++|+++... +.+.+...+. .+..++| ||.+.... . ...-..
T Consensus 84 ----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 84 ----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred ----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 1111123678899999998763 3333332222 2333444 34433211 1 122236
Q ss_pred cEEccCCCHHHHHHHHHHHhCCCC-CC-cchHHHHHHHHHHhCCChHHHHHHHHHHh----cCCHHHHHHHHH
Q 000701 302 PFLIGVLNEEEAWRLFKMTAGDDV-EH-RELNSTARNVAMACGGLPIALTTIARALR----NRSMREWKNALQ 368 (1344)
Q Consensus 302 ~~~l~~L~~~e~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~g~Plai~~~~~~l~----~~~~~~w~~~l~ 368 (1344)
.+++.+++.++.+.++.+.+.... .. .-.++....|++.++|.+..+..+..... ..+.+..+.++.
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~ 217 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQ 217 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHh
Confidence 789999999999999998763211 11 22356678899999999876554443332 124555555444
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=2.9e-08 Score=114.30 Aligned_cols=107 Identities=23% Similarity=0.243 Sum_probs=51.2
Q ss_pred hcCCcceEEEeCCCCCCc-------CCcccccCCCCcEEEcCCCCCCCc--cccccccc---cceeecccCCCc-----c
Q 000701 550 KEMRMLRVVGFSKMQLSS-------LPSSMDLLVNLQTLSLDQSMLGDI--AIIGKLKN---LEILSMINSDIV-----K 612 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~---L~~L~l~~~~l~-----~ 612 (1344)
...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+... ..+..+.+ |++|++++|.+. .
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 344455555555554431 223444555666666665554421 33333333 666666655443 1
Q ss_pred cChhhhcc-CcccEEecccccccc-----ccChhhhccCCcCCEEEcccccc
Q 000701 613 LPEAFGLL-TKLRLLDLTDCFQLK-----VIAPNVLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 613 lp~~i~~L-~~L~~L~l~~~~~l~-----~~~~~~l~~L~~L~~L~l~~~~~ 658 (1344)
+...+..+ ++|+.|++++| .++ .++.. +..+.+|++|++++|.+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 22334444 55666666665 333 11111 34445566666655544
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.1e-05 Score=87.72 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=135.4
Q ss_pred cccccchHHHH---HHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 000701 152 YEAFESRFSTL---RDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEK 228 (1344)
Q Consensus 152 ~~~~~gR~~~~---~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (1344)
.+.+||.+.-+ .-|..++..+......+|||+|+||||||+.++...... | ..++...+-..-++++++.
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHHH
Confidence 45567776654 446666777888889999999999999999999876533 3 3344333322222333221
Q ss_pred hccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc--cccccCcCCCCCCceEEEE--EecChHHHH---hhCCCC
Q 000701 229 LGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN--LETVGIPYGDDHKGCKILL--TSRDRSVLL---KMGSAP 301 (1344)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~iiv--TtR~~~v~~---~~~~~~ 301 (1344)
-.+....+++.+|++|+|+.... -+.+ ++....|.-|+| ||.+....- ..+-..
T Consensus 96 ----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 96 ----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred ----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 11222248899999999987632 2222 333456766666 555543221 234457
Q ss_pred cEEccCCCHHHHHHHHHHHhCCC---CC---CcchHHHHHHHHHHhCCChHHHHHH---HHHHh-cC---CHHHHHHHHH
Q 000701 302 PFLIGVLNEEEAWRLFKMTAGDD---VE---HRELNSTARNVAMACGGLPIALTTI---ARALR-NR---SMREWKNALQ 368 (1344)
Q Consensus 302 ~~~l~~L~~~e~~~lf~~~~~~~---~~---~~~~~~~~~~i~~~~~g~Plai~~~---~~~l~-~~---~~~~w~~~l~ 368 (1344)
++++++|+.+|-.+++.+.+-+. .. ..--++...-+++.++|---+.--. +..+. .. ..+..++.+.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 89999999999999999854211 11 1112456777888888875432222 22222 11 2444555544
Q ss_pred HhcCCCCCCcccchHHHHHHHHHHHhcCCChhHHHHHHhccccCCC
Q 000701 369 QLRAPSSVNFEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLMGNR 414 (1344)
Q Consensus 369 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~ 414 (1344)
+-..... .-.+.--.+..++.-|...=+++ ...+.++-++-.+
T Consensus 237 ~~~~~~D-k~gD~hYdliSA~hKSvRGSD~d--AALyylARmi~~G 279 (436)
T COG2256 237 RRSARFD-KDGDAHYDLISALHKSVRGSDPD--AALYYLARMIEAG 279 (436)
T ss_pred hhhhccC-CCcchHHHHHHHHHHhhccCCcC--HHHHHHHHHHhcC
Confidence 3222111 11122346778888888877764 3444445555544
No 44
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.2e-06 Score=93.01 Aligned_cols=202 Identities=21% Similarity=0.267 Sum_probs=131.1
Q ss_pred cccccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
++.+.+|+.++.++...+. ...+.-+.|+|++|+|||+.++.++........-..+++|++-...++.+++.+|+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3458999999999998886 333445999999999999999999998875533233889999999999999999999
Q ss_pred Hhcc-ccccccHHHHHHHHHHHHHc-CCeEEEEEeCCCCcccc--ccccCcCCCCC-CceE--EEEEecChHHHH-----
Q 000701 228 KLGL-ILHEETVSRRASRLYERLKE-EKKILVVLDNLWKCLNL--ETVGIPYGDDH-KGCK--ILLTSRDRSVLL----- 295 (1344)
Q Consensus 228 ~l~~-~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~--~~l~~~l~~~~-~~~~--iivTtR~~~v~~----- 295 (1344)
.++. ...+....+....+.+.+.. ++.+++|||+++....- +.+...+.... ..++ +|..+-+.....
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 9963 22334445556666666653 78899999999876332 22222221111 1343 333444333222
Q ss_pred ---hhCCCCcEEccCCCHHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhC-CChHHHHHHHHH
Q 000701 296 ---KMGSAPPFLIGVLNEEEAWRLFKMTAG----DDVEHRELNSTARNVAMACG-GLPIALTTIARA 354 (1344)
Q Consensus 296 ---~~~~~~~~~l~~L~~~e~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~~~ 354 (1344)
.++. ..+...|.+.+|-..++..++. +..-.++.-+++..++.+-+ -.-.||.++...
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 2222 3478999999999999999883 11222333333444444444 444555555443
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=4.5e-09 Score=117.17 Aligned_cols=104 Identities=30% Similarity=0.378 Sum_probs=49.0
Q ss_pred hcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhccCcccEEec
Q 000701 550 KEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDL 628 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 628 (1344)
.++..|.+|||+.|.+..+|..++.|. |++|.+++|++..+ +.++.+.+|..||.+.|.+..+|..++.|.+|+.|++
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 444445555555555554544444333 44455555544444 4444444555555555555455555555555555555
Q ss_pred cccccccccChhhhccCCcCCEEEccccc
Q 000701 629 TDCFQLKVIAPNVLSSLIRLEELYMRNCF 657 (1344)
Q Consensus 629 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 657 (1344)
..| .+..+|++ ++.| .|..||++.|.
T Consensus 197 rRn-~l~~lp~E-l~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 197 RRN-HLEDLPEE-LCSL-PLIRLDFSCNK 222 (722)
T ss_pred hhh-hhhhCCHH-HhCC-ceeeeecccCc
Confidence 444 44444444 3322 24444444443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=6.5e-09 Score=115.93 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=110.7
Q ss_pred ccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhcc
Q 000701 542 INISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLL 620 (1344)
Q Consensus 542 ~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L 620 (1344)
..+|..+ ..+-.|..|.|+.|.+..+|..+++|..|.||+|+.|+++.+ ..++.| -|+.|-+++|+++.+|..++.+
T Consensus 88 ~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccc
Confidence 4555554 566677777777777777777788888888888888777776 455544 3777777777777788777777
Q ss_pred CcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCcc
Q 000701 621 TKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEGF 700 (1344)
Q Consensus 621 ~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~ 700 (1344)
..|.+|+.+.| .+..+|.. ++.|.+|+.|.+..|.+ ...+.++..| .|..||+++|.+..+|-.+
T Consensus 166 ~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l------------~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 166 PTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL------------EDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred hhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh------------hhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 77777877777 67777776 77777777777776654 2334455533 4667777777777777776
Q ss_pred -ccccCceeEEEecCC
Q 000701 701 -FSRRLENFKISVGDA 715 (1344)
Q Consensus 701 -~~~~L~~L~l~~~~~ 715 (1344)
.+.+|+.|.+.+|..
T Consensus 231 r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhheeeeeccCCC
Confidence 677777777766543
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=103.67 Aligned_cols=291 Identities=21% Similarity=0.200 Sum_probs=192.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-CEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLF-DQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
..+.+.++|+|||||||++-++.. .+.. | +.+.++...+..+...+.-.+...++....+ ....+..+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 457899999999999999999998 4432 5 5677888888888888888888877764422 1223334445554
Q ss_pred CCeEEEEEeCCCCcc-ccccccCcCCCCCCceEEEEEecChHHHHhhCCCCcEEccCCCHH-HHHHHHHHHhCCC----C
Q 000701 252 EKKILVVLDNLWKCL-NLETVGIPYGDDHKGCKILLTSRDRSVLLKMGSAPPFLIGVLNEE-EAWRLFKMTAGDD----V 325 (1344)
Q Consensus 252 ~~~~LlvlDdv~~~~-~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~----~ 325 (1344)
++|.++|+||..... +-..+...+..+.+.-.++.|+|..-. ........+.+|+.. ++.++|...+... .
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 789999999988763 222233344455666678888886532 223345566666654 7899988877311 1
Q ss_pred CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHH----hcCCCCCCcccchHHHHHHHHHHHhcCCChhH
Q 000701 326 EHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQ----LRAPSSVNFEGISAEAYSAIDLSIKYLRGDKL 401 (1344)
Q Consensus 326 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 401 (1344)
-..........|.++..|.|++|..++...+....++...-++. +... .......++...+.+.+||.-|.. -.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtg-we 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTG-WE 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhh-HH
Confidence 12333566889999999999999999999998776665544442 2222 122223345678899999999987 58
Q ss_pred HHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcccceecC--CCCcEEEcHHHHHHHHHhh
Q 000701 402 RKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADARIKLDALVQELRDSSLLLAGD--NNEELSMHDIVRDVATSTA 479 (1344)
Q Consensus 402 k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~h~lv~~~~~~~~ 479 (1344)
+.-|.-++.|...|+.+ ...|.+.|-..... .+.. ...+..+++.+++...+ ..-.|+.-+.+|.|+..+.
T Consensus 242 ~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~----~y~~-~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLG--LALAVAAGADVDVP----RYLV-LLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhccc--HHHHHhcCCccccc----hHHH-HHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999887776 33444443321111 1111 12356677777764332 2335777778888888777
Q ss_pred cc
Q 000701 480 CH 481 (1344)
Q Consensus 480 ~~ 481 (1344)
++
T Consensus 315 ~r 316 (414)
T COG3903 315 HR 316 (414)
T ss_pred Hh
Confidence 65
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.51 E-value=8.9e-07 Score=94.81 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
...+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~-- 89 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENL-- 89 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhc--
Confidence 344678999999999999999999987644 3456777763210 000 0122222
Q ss_pred CCeEEEEEeCCCCc---ccccc-ccCcCCCC-CCceEEEE-EecC---------hHHHHhhCCCCcEEccCCCHHHHHHH
Q 000701 252 EKKILVVLDNLWKC---LNLET-VGIPYGDD-HKGCKILL-TSRD---------RSVLLKMGSAPPFLIGVLNEEEAWRL 316 (1344)
Q Consensus 252 ~~~~LlvlDdv~~~---~~~~~-l~~~l~~~-~~~~~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~l 316 (1344)
.+.-+|++||+|.. ..|+. +...+... ..+..+|| |++. +.+..++.....+++++++.++.+++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 23358999999875 34442 22222211 23445544 4543 35555666677899999999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000701 317 FKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIA 352 (1344)
Q Consensus 317 f~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 352 (1344)
+++.+....- .-.+++..-|++.+.|-.-++..+-
T Consensus 170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 9988853221 1224567788888887765444433
No 49
>PTZ00202 tuzin; Provisional
Probab=98.49 E-value=1.6e-05 Score=88.17 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=103.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHc---CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 148 SSTGYEAFESRFSTLRDIRNALTN---ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
.|.+...|+||+.++..|...|.+ +..++++|+|++|+||||+++.+..... ...++.... +.+++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHH
Confidence 355667899999999999999863 2346899999999999999999996553 123333333 77999999
Q ss_pred HHHHhccccccccHHHHHHHHHHHHH----c-CCeEEEEEeC--CCCcc-ccccccCcCCCCCCceEEEEEecChHHHHh
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLK----E-EKKILVVLDN--LWKCL-NLETVGIPYGDDHKGCKILLTSRDRSVLLK 296 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlvlDd--v~~~~-~~~~l~~~l~~~~~~~~iivTtR~~~v~~~ 296 (1344)
++++||.... ....+....+.+.+. . +++.+||+-= -.+.. .+.+. ..+.....-|+|++----+.....
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchh
Confidence 9999997432 222334444444443 2 6667777642 22111 11111 122233345667765544433221
Q ss_pred ---hCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 297 ---MGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 297 ---~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.+-...|.+.+++.++|.++.....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1223467889999999998876654
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.9e-06 Score=101.38 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=111.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKL-------------------FDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1344)
-..++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++..--... |..++++.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 356899999999999999877665 4589999999999999999987642211 11223332
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEe-
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTS- 288 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTt- 288 (1344)
......+..+ ++|.+.+ ...-..+++-++|+|+++.. .....+...+-......++|++|
T Consensus 95 Aas~~kVDdI-ReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 95 AASRTKVDDT-RELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred cccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 2211222222 2222211 11111367789999999876 34555444443333455555554
Q ss_pred cChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000701 289 RDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 289 R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
....+... ..-...+++.+++.++..+++.+.+..... .--++.+..|++.++|.|-.+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 44444322 223368999999999999999887743211 122456788999999988533
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=9.1e-06 Score=97.05 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=114.6
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 211 (1344)
-++++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++...-+. .|..+++++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 35689999999999999987664 5668999999999999999998764211 122233433
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEec
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSR 289 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR 289 (1344)
......++++ +++++.+ ...-..++.-++|||+++... .+..+...+.......++|++|+
T Consensus 95 Aas~rgVDdI-ReLIe~a----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 95 AASNRGVDEM-AALLERA----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred ccccccHHHH-HHHHHHH----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 3322222222 1111111 000112456689999999774 35555544444445677777776
Q ss_pred ChH-HHH-hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000701 290 DRS-VLL-KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIAR 353 (1344)
Q Consensus 290 ~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 353 (1344)
+.. +.. ..+-...+.+.+++.++..+.+.+.+...... -.++....|++.++|.. -++..+-.
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 543 221 12223578999999999999998887532211 12456788999998865 45555433
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=5.2e-07 Score=87.96 Aligned_cols=116 Identities=28% Similarity=0.375 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc---CCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc-ccHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER---KLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE-ETVSRRASRLYER 248 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 248 (1344)
+.+.+.|+|++|+|||++++++++..... ..-..++|+.+....+...+...|+..++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999876531 1134577999988889999999999999887665 4555566777777
Q ss_pred HHcCCeEEEEEeCCCCc-c--ccccccCcCCCCCCceEEEEEecC
Q 000701 249 LKEEKKILVVLDNLWKC-L--NLETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 249 l~~~~~~LlvlDdv~~~-~--~~~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
+.+.+..+||+|+++.. . .++.+..... ..+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77666789999999875 2 2333322222 567788887765
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=2.3e-06 Score=92.60 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccccc
Q 000701 158 RFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEET 237 (1344)
Q Consensus 158 R~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 237 (1344)
.+..++.+.+++.....+.+.|+|++|+|||++|+.+++..... ....+++++....+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45567788887666667899999999999999999999877533 33456666543211 00
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCCCcc---ccc-cccCcCCC-CCCceEEEEEecChH---------HHHhhCCCCcE
Q 000701 238 VSRRASRLYERLKEEKKILVVLDNLWKCL---NLE-TVGIPYGD-DHKGCKILLTSRDRS---------VLLKMGSAPPF 303 (1344)
Q Consensus 238 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~-~l~~~l~~-~~~~~~iivTtR~~~---------v~~~~~~~~~~ 303 (1344)
..+.+.+ .+.-+||+||++... .|. .+...+.. ...+.++|+|++... +...+.....+
T Consensus 82 -----~~~~~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGL--EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 0111222 223489999998653 222 23222211 122347888887532 22233334678
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 000701 304 LIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIAR 353 (1344)
Q Consensus 304 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 353 (1344)
++.+++.++...+++..+..... .-.++..+.|++.++|.|..+..+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999998876531111 11235567788888888877666543
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-05 Score=92.47 Aligned_cols=173 Identities=12% Similarity=0.169 Sum_probs=108.1
Q ss_pred ccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEEEEc
Q 000701 153 EAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKL-------------------FDQVVFSEV 212 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 212 (1344)
++++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++...-... +..+.++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 5689999999999999986654 56789999999999999999987642111 111222221
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEE
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILL 286 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iiv 286 (1344)
+..... +.+..+.+.+. .+++-++|+|+++... .++.+...+.......++|+
T Consensus 96 ~~~~~v---------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 96 ASRTKV---------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred cccCCH---------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 111111 11222222221 2456799999998774 45555444444445666666
Q ss_pred EecCh-HHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 287 TSRDR-SVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 287 TtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
+|.+. .+... .+-...+++.+++.++..+.+...+..... .-.++.+..|++.++|.|-.
T Consensus 155 ~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 155 ATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 66543 33322 222367999999999999988886632211 11235577899999998753
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.39 E-value=4.3e-06 Score=96.79 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=110.6
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH--HHHHH--HHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI--KDIQK--EIAE 227 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~--~i~~ 227 (1344)
-+.++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.+++++..+. ..+.. ....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAH 93 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhh
Confidence 3568999999999999998777677899999999999999999987653211112345554331100 00000 0000
Q ss_pred Hhccc-cccccHHHHHHHHHHHHHc-----CCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecChH-HHHhh-
Q 000701 228 KLGLI-LHEETVSRRASRLYERLKE-----EKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDRS-VLLKM- 297 (1344)
Q Consensus 228 ~l~~~-~~~~~~~~~~~~l~~~l~~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~~-v~~~~- 297 (1344)
..+.. .......+....+.+.... ..+-+||+||++... ....+...+......+++|+|+.... +...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 00000 0000112222233322221 345589999997663 22223322222334566777775432 22211
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALT 349 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 349 (1344)
.....+++.+++.++...++...+...... -.++.+..+++.++|.+-.+.
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 223578889999999999998876422211 124567888899988765443
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7e-06 Score=96.99 Aligned_cols=178 Identities=12% Similarity=0.171 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 211 (1344)
-+.++|.+...+.|..++..++. +.+.++|+.|+||||+|+.+++..--.. .|..++.+.
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 45789999999999999986664 5779999999999999999998763211 111223333
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEec
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSR 289 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR 289 (1344)
.+....++++ ++++..+ ...-..+++-++|+|+++... ....+...+.....+.++|++|.
T Consensus 94 AAs~~~VddI-Reli~~~----------------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 94 AASRTKVEDT-RELLDNV----------------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred ccccCCHHHH-HHHHHHH----------------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 2222222221 1111111 001113567799999998763 44444444433345566777665
Q ss_pred Ch-HHHH-hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 290 DR-SVLL-KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 290 ~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
+. .+.. .......+++.+++.++..+.+.+.+...... --.+....|++.++|.+-.
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 43 2222 22344689999999999999998877432211 1234577899999987743
No 57
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=8.6e-07 Score=85.41 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
.+++.|.|+.|+||||++++++++.. ....+++++..+.........+ ..+.+.+.. ..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhh-ccC
Confidence 47899999999999999999998775 2345677776553321110000 111222222 246
Q ss_pred eEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHHh------hCCCCcEEccCCCHHHH
Q 000701 254 KILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLK------MGSAPPFLIGVLNEEEA 313 (1344)
Q Consensus 254 ~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 313 (1344)
..++++|++....+|......+.+..+..+|++|+........ .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999998888776666666667899999997766532 12234678999987763
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=6e-08 Score=99.27 Aligned_cols=128 Identities=24% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-ccccccccccee
Q 000701 525 YPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEIL 603 (1344)
Q Consensus 525 ~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L 603 (1344)
...|..+++.++. +..+..++ .-.+.+|+|++|.|.|..+-. +..|++|+.|+|++|.+..+ ..-.+|-|.++|
T Consensus 283 Wq~LtelDLS~N~---I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNL---ITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccc---hhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3445555555544 44555444 455667777777777665533 66667777777777766666 444566666777
Q ss_pred ecccCCCcccChhhhccCcccEEeccccccccccCh-hhhccCCcCCEEEccccccc
Q 000701 604 SMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAP-NVLSSLIRLEELYMRNCFVQ 659 (1344)
Q Consensus 604 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~ 659 (1344)
.+++|.+..+. ++++|+.|..||+++| ++..+.. ..||+|+.|+++.+.+|.+.
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77776666553 4667777777777766 4433321 12667777777776666553
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=4e-05 Score=92.17 Aligned_cols=251 Identities=14% Similarity=0.096 Sum_probs=138.7
Q ss_pred CcccccchHHHHHHHHHHHHc----CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTN----ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~----~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... ++ ++-++.++..+... ...++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHHH
Confidence 346689999999999999873 2267899999999999999999998774 33 33445554333332 22222
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc------cccccCcCCCCCCceEEEEEecCh-HHHH--hh
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN------LETVGIPYGDDHKGCKILLTSRDR-SVLL--KM 297 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~l~~~~~~~~iivTtR~~-~v~~--~~ 297 (1344)
....... .+...++.+||+|+++.... +..+...+. ..+..||+|+.+. .... ..
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 2211000 01112678999999986532 333322222 2233466666432 1111 11
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh-cC---CHHHHHHHHHHhcCC
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALR-NR---SMREWKNALQQLRAP 373 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~---~~~~w~~~l~~l~~~ 373 (1344)
.....+++.+++.++....+...+......- ..+....|++.++|-.-.+......+. +. +.+....+.. .
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~----~ 224 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR----R 224 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----C
Confidence 2345789999999999999888773222111 145678899999987654433333233 22 3333332221 0
Q ss_pred CCCCcccchHHHHHHHHHHHhcCCChhHHHHHHhccccCCCCChhHHHHHHHhhccccccccHHHHH
Q 000701 374 SSVNFEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLMGNRIATSDLFKYCMGWGILKGVNKMADAR 440 (1344)
Q Consensus 374 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~ 440 (1344)
+....++.++..-+..=....+...+.. -+++.+ .+-.|+.+.+......++++.
T Consensus 225 ------d~~~~if~~l~~i~~~k~~~~a~~~~~~-----~~~~~~-~i~~~l~en~~~~~~~~~~~~ 279 (482)
T PRK04195 225 ------DREESIFDALDAVFKARNADQALEASYD-----VDEDPD-DLIEWIDENIPKEYDDPEDIA 279 (482)
T ss_pred ------CCCCCHHHHHHHHHCCCCHHHHHHHHHc-----ccCCHH-HHHHHHHhccccccCCHHHHH
Confidence 1123455565555542221123322221 234444 455788888876544444444
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=4.8e-07 Score=107.23 Aligned_cols=172 Identities=25% Similarity=0.362 Sum_probs=95.7
Q ss_pred cCCcceEEEeCCCCCCcCCcccccCC-CCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhccCcccEEec
Q 000701 551 EMRMLRVVGFSKMQLSSLPSSMDLLV-NLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDL 628 (1344)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 628 (1344)
.++.+..|++.++.+..+|.....+. +|++|++++|.+..+ ..++.+++|+.|++++|.+..+|...+.+++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34556666666666666666665553 666666666666666 5666666666666666666666665556666666666
Q ss_pred cccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCcc-ccccCce
Q 000701 629 TDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEGF-FSRRLEN 707 (1344)
Q Consensus 629 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~ 707 (1344)
+++ .+..+|.. ++.+..|++|.++++.. ...+..+.++.++..|.+..+....++..+ .+..++.
T Consensus 194 s~N-~i~~l~~~-~~~~~~L~~l~~~~N~~------------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 194 SGN-KISDLPPE-IELLSALEELDLSNNSI------------IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259 (394)
T ss_pred cCC-ccccCchh-hhhhhhhhhhhhcCCcc------------eecchhhhhcccccccccCCceeeeccchhccccccce
Confidence 666 66666654 34555566666655521 112223444445555554444444333333 3344555
Q ss_pred eEEEecCCCCCCcccceeccccccCccceeeccccceeeccccc
Q 000701 708 FKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLI 751 (1344)
Q Consensus 708 L~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~ 751 (1344)
|++..+... .+..+.+..+++.|++.+..
T Consensus 260 L~~s~n~i~---------------~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 260 LDLSNNQIS---------------SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ecccccccc---------------ccccccccCccCEEeccCcc
Confidence 555544331 22224455666666666544
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.31 E-value=2.7e-06 Score=86.40 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred CCcccccchHHHHHHHHHHHH-----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 150 TGYEAFESRFSTLRDIRNALT-----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~-----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
..-++|+|.++.+..+.-++. .+...-+.+|||+|+||||||.-+++..... | .+.+........++ ..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-AA 94 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-HH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-HH
Confidence 345789999998877655544 2345689999999999999999999988754 3 23332211111111 11
Q ss_pred HHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---------ccccccC-cCCCCC-----------CceE
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---------NLETVGI-PYGDDH-----------KGCK 283 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~-~l~~~~-----------~~~~ 283 (1344)
+...+ +++-+|.+|+++... ..+.... .....+ +-+-
T Consensus 95 --------------------il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 95 --------------------ILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp --------------------HHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred --------------------HHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 12222 344577778887652 1111100 000111 1223
Q ss_pred EEEEecChHHHHhhCCC--CcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000701 284 ILLTSRDRSVLLKMGSA--PPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIA 352 (1344)
Q Consensus 284 iivTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 352 (1344)
|=.|||...+......- ...+++.++.+|-.++.++.+..-. -+-.++.+..|++.+.|-|--..-+-
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 55688876655544332 3457999999999999998774211 11224678999999999996544443
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.3e-06 Score=95.70 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=110.6
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC------------------------CCCE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERK------------------------LFDQ 206 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~------------------------~f~~ 206 (1344)
-+++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..--.. .|..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 356899999999999999876654 678999999999999999998764210 1111
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCC
Q 000701 207 VVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHK 280 (1344)
Q Consensus 207 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~ 280 (1344)
+++++......+++ +..+.+.+. .++.-++|+|+++.. ..+..+...+..-..
T Consensus 95 viEIdAas~~gVDd---------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~ 153 (700)
T PRK12323 95 YIEMDAASNRGVDE---------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPE 153 (700)
T ss_pred ceEecccccCCHHH---------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCC
Confidence 22322222222222 222222221 366779999999877 345555444433334
Q ss_pred ceE-EEEEecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000701 281 GCK-ILLTSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALT 349 (1344)
Q Consensus 281 ~~~-iivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 349 (1344)
+++ |++||....+... .+-...+.+..++.++..+.+.+.+....... .++....|++.++|.|....
T Consensus 154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred CceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 555 4555554444432 12236789999999999999988774322111 23456789999999986443
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=1.7e-05 Score=91.12 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=105.8
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQ-VVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-..++|+++.++.+..++..+..+.+.|+|+.|+||||+|+.+++...... +.. .+-+..+.......+...+ ..+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i-~~~~ 93 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKI-KEFA 93 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHH-HHHH
Confidence 356889999999999999877777789999999999999999998764322 211 1122222222222111111 1111
Q ss_pred cccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecCh-HHHH-hhCCCCcEEcc
Q 000701 231 LILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDR-SVLL-KMGSAPPFLIG 306 (1344)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~-~v~~-~~~~~~~~~l~ 306 (1344)
...+ .....+-++++|+++... ....+...+......+++|+++... .+.. .......+++.
T Consensus 94 ~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 94 RTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred hcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 0000 001345689999987652 2233333333333456677766432 1111 11223468999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 307 VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 307 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
+++.++....+...+...... -.++.+..+++.++|.+-.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 999999999988877432211 1245678889999998754
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=8.2e-06 Score=92.58 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=105.6
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD-QVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-+.++|.++.++.|.+++..++.+.+.++|++|+||||+|+.+++..... .|. .++-++.++...... .+.+++.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHHHHHH
Confidence 45688999989999888887777778899999999999999999876322 122 222233333333322 222222111
Q ss_pred cccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecCh-HHHH-hhCCCCcEEcc
Q 000701 231 LILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDR-SVLL-KMGSAPPFLIG 306 (1344)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~-~v~~-~~~~~~~~~l~ 306 (1344)
.... ....++.-++++|+++... +...+...+......+++|+++... .+.. .......+++.
T Consensus 90 ~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 0000 0002456799999998763 2222322222223445666666432 2211 11223578999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 307 VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 307 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
+++.++....+...+......- .++....|++.++|-.-
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMR 195 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 9999999999988774322111 13457788899988753
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=3.7e-05 Score=91.22 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=109.3
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-------------------CEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLF-------------------DQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f-------------------~~~~wv~ 211 (1344)
-..++|++..++.+.+++..++. +.+.++|+.|+||||+|+.+++...-.... ..++++.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 35689999999999999976554 478899999999999999999876421110 0122222
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii 285 (1344)
.+....+.+ +..+.+... .+++-++|+|+++.. .++..+...+......+.+|
T Consensus 95 aas~igVd~---------------------IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 95 AASNNGVDE---------------------IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred cccccCHHH---------------------HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 211122222 122222111 134557999999865 34454544443333445555
Q ss_pred E-EecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHH
Q 000701 286 L-TSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIARA 354 (1344)
Q Consensus 286 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~ 354 (1344)
+ |+....+... ......+++.+++.++....+...+......- .++.+..+++.++|.+ .|+..+-.+
T Consensus 154 L~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred EECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4 4444444322 23346899999999999999888764221111 1345778999999966 455555543
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=89.52 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=115.3
Q ss_pred ccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHh----hcCCCCEEEEEE-cCCCCCHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAK----ERKLFDQVVFSE-VSQTPNIKDIQKEIA 226 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 226 (1344)
+.++|.+..++.+..++..++. +...++|+.|+|||++|+.+++..- ...++|...|.. -+.....+++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 3578989999999999986655 5678999999999999999998652 234556555654 23334444432 233
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecChHHH-H-hhCCCCc
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRDRSVL-L-KMGSAPP 302 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~~~v~-~-~~~~~~~ 302 (1344)
+.+.... . .+++-++|+|+++.. .++..+...+....+++.+|++|.+.... . ..+-...
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3222110 0 245667777776544 46666766666656788888888654322 1 1223468
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 303 FLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 303 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
+++.++++++....+.+..... .++.+..++..++|.|..+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999988887765311 123467889999999875543
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=5.7e-07 Score=106.59 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=117.9
Q ss_pred CCCCcceeecccCCCcccccccHHHHhcCC-cceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccc
Q 000701 524 EYPKLEFLFMCSKDPFVEINISKSFFKEMR-MLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLE 601 (1344)
Q Consensus 524 ~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~ 601 (1344)
..+.+..|.+.++. ..++++.. ..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+.++ ...+.+.+|+
T Consensus 114 ~~~~l~~L~l~~n~---i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcc---cccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 44667777776555 46666554 4453 78888888888888777778888888888888888777 4444788888
Q ss_pred eeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCC
Q 000701 602 ILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLP 681 (1344)
Q Consensus 602 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~ 681 (1344)
.|++++|.+..+|..+..+..|++|.++++. ....+.. +.++.++..|.+.++... ..+..++.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccc
Confidence 8888888888888777777778888887773 3334333 677777777776555431 1133456667
Q ss_pred CCcEEEEEeCCCCCCCCccccccCceeEEEecC
Q 000701 682 RLTSLEIDIGNDDILPEGFFSRRLENFKISVGD 714 (1344)
Q Consensus 682 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 714 (1344)
+++.|+++++.+..++......+++.|++..+.
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCcc
Confidence 778888887777776664456677777766544
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.9e-05 Score=93.73 Aligned_cols=186 Identities=13% Similarity=0.184 Sum_probs=112.5
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER-------------------KLFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 211 (1344)
-..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-. ..|..++++.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 35689999999999999986655 457899999999999999999865421 1122333333
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEE-EEe
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKIL-LTS 288 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ii-vTt 288 (1344)
......++++ +++...+ ...-..+++-++|+|+++... .++.+...+......+.+| +||
T Consensus 95 aas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 95 AASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 3222222221 1222111 111113677799999998663 4455544444433455555 555
Q ss_pred cChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 000701 289 RDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIARAL 355 (1344)
Q Consensus 289 R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 355 (1344)
....+... ......+++.+++.++....+.+.+..... .-.+.....|++.++|-+ .|+..+-.+.
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44444322 233468999999999998888876632211 112445678999999965 4555554433
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=5.5e-06 Score=82.99 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc
Q 000701 156 ESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE 235 (1344)
Q Consensus 156 ~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 235 (1344)
+||+..+..+...+.....+.+.|+|++|+|||++++.+++..... -..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788889999999887667899999999999999999999987522 2346677665544332222111100
Q ss_pred ccHHHHHHHHHHHHHcCCeEEEEEeCCCCc-----cccccccCcCCC---CCCceEEEEEecChH
Q 000701 236 ETVSRRASRLYERLKEEKKILVVLDNLWKC-----LNLETVGIPYGD---DHKGCKILLTSRDRS 292 (1344)
Q Consensus 236 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~---~~~~~~iivTtR~~~ 292 (1344)
............++.++|+||++.. ..+......+.. ...+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111356789999999864 122222222211 135778888888653
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.5e-05 Score=92.73 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=112.8
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE------------------EEEEEc
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQ------------------VVFSEV 212 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~------------------~~wv~~ 212 (1344)
-+.++|.+..++.|..++..++. +.+.++|++|+||||+|+.+++...-...+.. +.+++.
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 35689999999999999886665 46699999999999999999987753222221 222222
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEE
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILL 286 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiv 286 (1344)
+....+ +.+..+.+.+. .+++-++|+|+++.. ..+..+...+......+.+|+
T Consensus 93 ~~~~~v---------------------d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 93 ASNNSV---------------------EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred cccCCH---------------------HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 211111 11222222221 256679999999865 345555544444344555555
Q ss_pred Eec-ChHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 000701 287 TSR-DRSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIARAL 355 (1344)
Q Consensus 287 TtR-~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 355 (1344)
+|. ...+...+ .....+++.+++.++....+.+.+....... .++.+..|++.++|.+- ++..+-.++
T Consensus 152 ~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 152 ATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 554 33332222 2346799999999999999998774222111 24567889999999885 444444433
No 71
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=0.00011 Score=81.59 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=127.2
Q ss_pred CCcccccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 150 TGYEAFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
..+...+||+.|...+.+|+. ....+.+.|.|-+|.|||.+...++.+......-..++++++..-....+++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345678999999999999987 4567899999999999999999999888754333456788887777888888888
Q ss_pred HHHhcccc-ccccHHHHHHHHHHHHHcC-CeEEEEEeCCCCccc--cccccCcCCC-CCCceEEEEEecChHHH------
Q 000701 226 AEKLGLIL-HEETVSRRASRLYERLKEE-KKILVVLDNLWKCLN--LETVGIPYGD-DHKGCKILLTSRDRSVL------ 294 (1344)
Q Consensus 226 ~~~l~~~~-~~~~~~~~~~~l~~~l~~~-~~~LlvlDdv~~~~~--~~~l~~~l~~-~~~~~~iivTtR~~~v~------ 294 (1344)
...+-... ......+....+.+...+. ..+|+|+|+++.... -+.+...|.+ ..+++++|+.---..+.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 88772211 1111123333344444433 478999999986521 1222222322 34566655543221111
Q ss_pred Hhh-----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHh----CCChHHHHHHHH
Q 000701 295 LKM-----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMAC----GGLPIALTTIAR 353 (1344)
Q Consensus 295 ~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~ 353 (1344)
... -....+...|.+.++-.+++..+.............++-+++|+ |.+--|+.+.-+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 111 12357888999999999999999854433332233344444444 444444444443
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=91.60 Aligned_cols=196 Identities=12% Similarity=0.109 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-+.++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++...-...... ..+.....-..+...+...+.
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCccce
Confidence 456899999999999999877654 6899999999999999999987642211000 001111111111110000000
Q ss_pred -cccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEE-EEecChHHHHhh-CCCC
Q 000701 231 -LILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKIL-LTSRDRSVLLKM-GSAP 301 (1344)
Q Consensus 231 -~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii-vTtR~~~v~~~~-~~~~ 301 (1344)
.........+.+..+.+.+. .++.-++|+|+++.. +.+.++...+........+| .||....+...+ .-..
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 00000011122222333222 356779999999876 34666554443333445544 455444443322 2335
Q ss_pred cEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 302 PFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 302 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
.+.+.+++.++..+.+++.+...... -.++....|++.++|.+- |+..+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHHHHHH
Confidence 79999999999999988877432211 124567889999999874 33333
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.5e-05 Score=91.91 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=116.0
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKL-------------------FDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1344)
-+.++|.+...+.|..++..++. +.+.++|++|+||||+|+.+++....... +..++.++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 45689999998888888887666 45899999999999999999987642110 11223333
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEec
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSR 289 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR 289 (1344)
.+......++ +++...... .-..+++-++|+|+++.. ...+.+...+........+|++|.
T Consensus 93 aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 3222223222 122221110 001256779999999765 233444333333233444444443
Q ss_pred C-hHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHHHHh--c--CCHHH
Q 000701 290 D-RSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGG-LPIALTTIARALR--N--RSMRE 362 (1344)
Q Consensus 290 ~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l~--~--~~~~~ 362 (1344)
+ ..+...+ .....+++.+++.++....+++.+...... -.++....|++.++| .+.++..+..+.. + .+.+.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~ 234 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLET 234 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3 3343322 334678999999999999988877322111 113556778887765 4677777766443 1 24555
Q ss_pred HHHHH
Q 000701 363 WKNAL 367 (1344)
Q Consensus 363 w~~~l 367 (1344)
...++
T Consensus 235 V~~~l 239 (472)
T PRK14962 235 VHEAL 239 (472)
T ss_pred HHHHH
Confidence 55444
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.5e-05 Score=90.07 Aligned_cols=178 Identities=13% Similarity=0.224 Sum_probs=111.8
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-----------------------CEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLF-----------------------DQV 207 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f-----------------------~~~ 207 (1344)
-.+++|.+..++.|...+..++. +.+.++|+.|+||||+|+.+++..--.... ..+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 35689999999999988876654 578999999999999999999876422110 011
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCc
Q 000701 208 VFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKG 281 (1344)
Q Consensus 208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~ 281 (1344)
+.+.......+.+ +..+.+... .+++-++|+|+++.. .++..+...+....+.
T Consensus 100 ~eidaas~~~vd~---------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 100 IEIDAASKTSVDD---------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred EEeeccCCCCHHH---------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 2222222222222 222222221 256779999999876 3466655444444455
Q ss_pred eEEEE-EecChHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 282 CKILL-TSRDRSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 282 ~~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
+.+|+ ||+...+...+ .....+++.+++.++....+.+.+......- .++....|++.++|.+- |+..+
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 55555544422 2346789999999999999998884322211 13456779999999774 33433
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=0.00011 Score=85.67 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER--------------------KLFDQVVFS 210 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~--------------------~~f~~~~wv 210 (1344)
...++|.++.++.+.+++..++. +.+.++|++|+|||++|+.++...... .+++ ++++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 45689999999999999986654 467899999999999999999876421 1222 2333
Q ss_pred EcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEe
Q 000701 211 EVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTS 288 (1344)
Q Consensus 211 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTt 288 (1344)
.........+ .+++...+.... . .+++-++|+|+++.. .....+...+......+.+|++|
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~p---------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYAP---------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcCc---------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 3222122211 122222211000 0 245668999998765 33444444443334556666666
Q ss_pred cChH-HHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 289 RDRS-VLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 289 R~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
.+.. +... ......+++.++++++....+...+...... -.++.+..+++.++|.|..+...
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHH
Confidence 5443 2221 2234578899999999999998877322111 11356788999999988655443
No 76
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.2e-07 Score=98.87 Aligned_cols=134 Identities=18% Similarity=0.137 Sum_probs=69.3
Q ss_pred hcCCcceEEEeCCCCCCcC---CcccccCCCCcEEEcCCCCCCCc-c--ccccccccceeecccCCCc--ccChhhhccC
Q 000701 550 KEMRMLRVVGFSKMQLSSL---PSSMDLLVNLQTLSLDQSMLGDI-A--IIGKLKNLEILSMINSDIV--KLPEAFGLLT 621 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~l-~--~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~ 621 (1344)
..+.++|.|||+.|-+... -.-...|++|+.|+|+.|.+..+ + .-..+.+|..|.+++|.+. .+-.-...++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 5566666666666654332 23344566666666666655544 1 1335566666666666554 2222334456
Q ss_pred cccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCC
Q 000701 622 KLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDD 694 (1344)
Q Consensus 622 ~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~ 694 (1344)
+|..|+|..|..+..-... ...+..|+.|++++|.+... ......+.++.|+.|.++.+++.
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~----------~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF----------DQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc----------ccccccccccchhhhhccccCcc
Confidence 6666666666322111111 34456666666666655321 11223445556666666655543
No 77
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.6e-07 Score=99.30 Aligned_cols=106 Identities=22% Similarity=0.364 Sum_probs=66.4
Q ss_pred hcCCcceEEEeCCCCCCcCC--cccccCCCCcEEEcCCCCCCCc----cccccccccceeecccCCCcccChh--hhccC
Q 000701 550 KEMRMLRVVGFSKMQLSSLP--SSMDLLVNLQTLSLDQSMLGDI----AIIGKLKNLEILSMINSDIVKLPEA--FGLLT 621 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~Lr~L~L~~~~i~~l----~~i~~L~~L~~L~l~~~~l~~lp~~--i~~L~ 621 (1344)
+++++||...|.++.+...+ .....|++++.|+|++|-+... .-...|++|+.|+++.|.+.....+ -.-+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 56778888888887776665 3566788888888888765442 4566777888888887765432221 22456
Q ss_pred cccEEeccccccccccChh-hhccCCcCCEEEcccc
Q 000701 622 KLRLLDLTDCFQLKVIAPN-VLSSLIRLEELYMRNC 656 (1344)
Q Consensus 622 ~L~~L~l~~~~~l~~~~~~-~l~~L~~L~~L~l~~~ 656 (1344)
+|+.|.+++| ++..-... ....+++|..|++..|
T Consensus 198 ~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 6777777777 44422111 1235566666666655
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.18 E-value=3e-05 Score=83.23 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=98.8
Q ss_pred ccccchHHH-HHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 153 EAFESRFST-LRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 153 ~~~~gR~~~-~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
+.|++.... +..+...........+.|+|+.|+|||+|++.+++..... ...++|++..+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH-----
Confidence 345544432 3333333333344579999999999999999999887644 33566776422 111111
Q ss_pred ccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---ccccccCcCCC--CCCceEEEEEecCh---------HHHHhh
Q 000701 232 ILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---NLETVGIPYGD--DHKGCKILLTSRDR---------SVLLKM 297 (1344)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~l~~--~~~~~~iivTtR~~---------~v~~~~ 297 (1344)
...+.+ .+.-+||+||++... .|......+.. ...+..||+|++.. .+..++
T Consensus 86 ------------~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 ------------DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred ------------HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 122233 244589999997553 23221111111 12356699999843 222244
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
.....+++++++.++-.+++++++....- .-.++...-|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 45668999999999999999987742211 112455677888887665443
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.18 E-value=3.5e-05 Score=89.33 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=103.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHc-------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcC
Q 000701 147 QSSTGYEAFESRFSTLRDIRNALTN-------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVS 213 (1344)
Q Consensus 147 ~~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 213 (1344)
.|....+.+.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++..... | +.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~ 188 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVV 188 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecc
Confidence 3444556789999999999888741 124569999999999999999999876532 2 2221
Q ss_pred CCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------------cccccCcCC-
Q 000701 214 QTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----------------LETVGIPYG- 276 (1344)
Q Consensus 214 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~- 276 (1344)
. ..+.... ++ .....+..+++......+.+|++|+++.... +..+...+.
T Consensus 189 ~----~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 G----SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred h----HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1 1111111 11 1112233344444345678999999875410 111111111
Q ss_pred -CCCCceEEEEEecChHHHH-h----hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 277 -DDHKGCKILLTSRDRSVLL-K----MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 277 -~~~~~~~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
....+.+||.||....... . ......+++...+.++..++|+.+........+. ....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 1234677888887543221 1 1224578899999999999999887533222111 1456777777764
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.3e-05 Score=86.99 Aligned_cols=198 Identities=14% Similarity=0.022 Sum_probs=111.7
Q ss_pred CCCcccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE-E--EcCCCCCHHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVF-S--EVSQTPNIKDIQKE 224 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-v--~~~~~~~~~~~~~~ 224 (1344)
|.....++|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..+++..--+........ . ..-.....-...+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 334467899999999999999877654 6889999999999999999987632111000000 0 00000000011111
Q ss_pred HHHHhccc-------cccc-------cHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEE
Q 000701 225 IAEKLGLI-------LHEE-------TVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKI 284 (1344)
Q Consensus 225 i~~~l~~~-------~~~~-------~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 284 (1344)
+...--.+ .++. -..+.+..+.+.+. .+++.++|+|+++... ....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11100000 0000 01223334444332 3667799999998663 333443333333345556
Q ss_pred EEEecCh-HHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 285 LLTSRDR-SVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 285 ivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
|++|.+. .+... ......+.+.+++.++..+++....+... +.....+++.++|.|.....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 6666554 33222 23346899999999999999988753211 122367899999999865444
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.17 E-value=4.8e-06 Score=86.98 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHHH---cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC
Q 000701 154 AFESRFSTLRDIRNALT---NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLF 204 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f 204 (1344)
.|+||+++++++...+. ....+.+.|+|++|+|||++++.++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 38999999999999993 4556899999999999999999999988876333
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=5.1e-05 Score=87.13 Aligned_cols=172 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHHHHcCC----------CeEEEEEcCCCCcHHHHHHHHHHHHhhcC------------------CC
Q 000701 153 EAFESRFSTLRDIRNALTNAN----------AGIIGVYGMGGIGKTTLVKAVARQAKERK------------------LF 204 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~----------~~~i~I~G~~G~GKTtLa~~v~~~~~~~~------------------~f 204 (1344)
+.++|.+..++.|.+++..+. .+.+.++|+.|+|||++|+.++...--.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999998653 46788999999999999999987653211 11
Q ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCC
Q 000701 205 DQVVFSEVS-QTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGD 277 (1344)
Q Consensus 205 ~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~ 277 (1344)
+.+.++... ....+++ +..+.+... .+++-++|+|+++... ....+...+..
T Consensus 85 pD~~~i~~~~~~i~i~~---------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE---------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCEEEeccccccCCHHH---------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 112222211 1122222 222222221 2566688899998763 22333333333
Q ss_pred CCCceEEEEEecC-hHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 278 DHKGCKILLTSRD-RSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 278 ~~~~~~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
..++..+|++|.+ ..+... .+-...+.+.+++.++..+.+.+..+- . ++.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--D----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--C----HHHHHHHHHHcCCCHHHHHHH
Confidence 3345555555544 344432 223468999999999999888755431 1 344778999999999755443
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.8e-05 Score=88.98 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=111.9
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKER-------------------KLFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 211 (1344)
-++++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--. ..+..++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 356899999999999998876665 79999999999999999998754210 1122344555
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEe-
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTS- 288 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTt- 288 (1344)
.+....++++. ++........ . .+++-++|+|+++... +...+...+....+.+++|++|
T Consensus 92 aas~~~vddIR-~Iie~~~~~P---------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 92 AASNTSVDDIK-VILENSCYLP---------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred cccCCCHHHHH-HHHHHHHhcc---------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 54444444332 2222211000 0 2566789999997663 3455544444444566666555
Q ss_pred cChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 289 RDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 289 R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
..+.+... ......+++.+++.++....+.+.+......- .++.+..|++.++|.+-
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMR 212 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 44444332 23446789999999999999988874322211 13457789999998775
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.1e-05 Score=85.31 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=114.4
Q ss_pred CCCcccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CCEEEEEEcCCCCCHHHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKL--FDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
|.....++|.++..+.+...+..++. ..+.|+|+.|+||||+|+.+++..-.... +... ............+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 44556789999999999999987665 46899999999999999999987643110 1100 000011111122333
Q ss_pred HHHhc-------ccccc-------ccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceE-E
Q 000701 226 AEKLG-------LILHE-------ETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCK-I 284 (1344)
Q Consensus 226 ~~~l~-------~~~~~-------~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~-i 284 (1344)
...-. ...+. .-..+.+..+.+.+. .+++-++|+|+++... ....+...+.....+.. |
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22100 00000 001233334444443 3677799999998763 23333333322223333 5
Q ss_pred EEEecChHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 285 LLTSRDRSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 285 ivTtR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
++|++...+...+ +-...+++.+++.++..+++.+...... -.++.+..|++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555544333322 2336899999999999999988532211 11345778999999999865443
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.15 E-value=3.2e-05 Score=83.22 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHH
Q 000701 160 STLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVS 239 (1344)
Q Consensus 160 ~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 239 (1344)
..+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344555555545555789999999999999999999877643 34566776643100
Q ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCc---cccccc-cCcCCCC--CCceEEEEEecCh---------HHHHhhCCCCcEE
Q 000701 240 RRASRLYERLKEEKKILVVLDNLWKC---LNLETV-GIPYGDD--HKGCKILLTSRDR---------SVLLKMGSAPPFL 304 (1344)
Q Consensus 240 ~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~l-~~~l~~~--~~~~~iivTtR~~---------~v~~~~~~~~~~~ 304 (1344)
....+.+.+. +.-+|++||+... ..|+.. ...+... ..+.++|+||+.. ....++....+++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~ 163 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceee
Confidence 0001122221 1247899999764 234322 1112111 1234699999744 3333556668899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 305 IGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 305 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
+++++.++-.+++++++.... -.-.+++..-|++.+.|..-++..+
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 999999999999988663221 1122466777888887765444433
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=2.9e-05 Score=93.01 Aligned_cols=178 Identities=13% Similarity=0.198 Sum_probs=108.0
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKL-------------------FDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1344)
-..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..--... |..++.+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 35789999999999999987664 46899999999999999999886532111 11122222
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHH----HcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERL----KEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ii 285 (1344)
......++ .+..+.+.. ..+++-++|+|+++... ....+...+......+++|
T Consensus 95 aAs~~gVd---------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 95 AASNTGID---------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred ccccCCHH---------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 22222221 122222211 12567799999998763 2333433333333455666
Q ss_pred EEecCh-HHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 286 LTSRDR-SVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 286 vTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
++|.+. .+... .+....+.+.+++.++....+.+.+...... -.++....|++.++|.+. ++..+
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 666433 22221 1223567888999999999998877432211 123567889999998874 33333
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.1e-05 Score=91.30 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=108.6
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 211 (1344)
-++++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--.. .|..++.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 356899999999999999876654 578999999999999999998763211 122234444
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEec
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSR 289 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR 289 (1344)
......++++ ++++..+... -..++.-++|+|+++.. .....+...+....+.+++|++|.
T Consensus 95 aas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3333333332 2222222110 01356678999999876 344444444443344566665544
Q ss_pred -ChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 290 -DRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 290 -~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
...+... .+....+++.+++.++....+...+......- .++....|++.++|.+.
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR 215 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVR 215 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHH
Confidence 3333322 22335788999999998887777763222111 13446778889988774
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.11 E-value=6.7e-05 Score=78.09 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=95.1
Q ss_pred HHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEEEEEcC-CCCCHHHH
Q 000701 164 DIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER--------------------KLFDQVVFSEVS-QTPNIKDI 221 (1344)
Q Consensus 164 ~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~-~~~~~~~~ 221 (1344)
.+.+.+..++. +.+.++|+.|+|||++|+.++...-.. .+.|. .++... .....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566665555 678999999999999999999876432 11122 222211 11222222
Q ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecCh-HHHHh-h
Q 000701 222 QKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDR-SVLLK-M 297 (1344)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~-~v~~~-~ 297 (1344)
+++...+.... ..+.+-++|+|+++... ..+.+...+....+.+.+|++|++. .+... .
T Consensus 82 -~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 -RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred -HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 12222221100 02567789999997663 3444544444434456666666543 22221 1
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
.....+++.+++.++..+.+.+. + .. ++.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 23358999999999999998887 2 21 35688999999998853
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=9.8e-06 Score=89.74 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHHHHHH-cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CHHHHHHHHHHHhccccccccHHH
Q 000701 164 DIRNALT-NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP--NIKDIQKEIAEKLGLILHEETVSR 240 (1344)
Q Consensus 164 ~l~~~l~-~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 240 (1344)
++++++. =+......|+|++|+||||||+.+++..... +|+.++|+.+.+.. ++.++++.+...+-....+.....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 3445554 2455788999999999999999999988865 89999999998887 777888888643222221222221
Q ss_pred H------HHHHHHHH-HcCCeEEEEEeCCCCc
Q 000701 241 R------ASRLYERL-KEEKKILVVLDNLWKC 265 (1344)
Q Consensus 241 ~------~~~l~~~l-~~~~~~LlvlDdv~~~ 265 (1344)
. +....+++ ..+++.+|++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1 11222222 2589999999999754
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00017 Score=86.21 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=112.0
Q ss_pred ccccchHHHHHHHHHHHHcCC-CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-------------------CEEEEEEc
Q 000701 153 EAFESRFSTLRDIRNALTNAN-AGIIGVYGMGGIGKTTLVKAVARQAKERKLF-------------------DQVVFSEV 212 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~-~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f-------------------~~~~wv~~ 212 (1344)
++++|.+..++.|.+++..++ .+.+.++|+.|+||||+|+.+++..--.... ..++++..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 567899999999999988665 4678899999999999999999876421100 01223322
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecC
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
.....++++ +.+.+.+. ..-..+++-++|+|+++.. .....+...+........+|++|..
T Consensus 96 a~~~~Id~i-R~L~~~~~----------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 96 ASNRGIDDA-KRLKEAIG----------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred ccccCHHHH-HHHHHHHH----------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 211122211 11111110 0001356779999999876 3344454444333344555555543
Q ss_pred -hHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 000701 291 -RSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIARALR 356 (1344)
Q Consensus 291 -~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l~ 356 (1344)
..+... ......+++.+++.++....+...+...... -.++.+..|++.++|.+ .|+..+..++.
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444322 2233578999999999999988866422111 12356788999999965 67777765543
No 91
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=1.1e-05 Score=86.16 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=64.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC--CCHHHHHHHHHHHhccccccccHHH------HHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT--PNIKDIQKEIAEKLGLILHEETVSR------RAS 243 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~ 243 (1344)
.....++|+|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+...+-....+..... .+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 455789999999999999999999988765 8999999997766 7899999998333211111111111 111
Q ss_pred HHHHHH-HcCCeEEEEEeCCCCc
Q 000701 244 RLYERL-KEEKKILVVLDNLWKC 265 (1344)
Q Consensus 244 ~l~~~l-~~~~~~LlvlDdv~~~ 265 (1344)
...+++ .++++.++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 3589999999999754
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=9.8e-05 Score=88.77 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=110.1
Q ss_pred ccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEEc
Q 000701 153 EAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSEV 212 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 212 (1344)
..++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--.. .|..++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 56899999999999999876654 568999999999999999998763211 1222333332
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecC
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
+....++++ +++...+... -..+++-++|+|+++... ....+...+......+.+|++|.+
T Consensus 96 ~~~~~vd~i-r~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred cccCCHHHH-HHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 222222221 1222211100 002567799999998763 344444444333345555555543
Q ss_pred -hHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 000701 291 -RSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIARAL 355 (1344)
Q Consensus 291 -~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 355 (1344)
..+... ......+++.+++.++....+.+.+...... ..++....|++.++|.+- |+..+-.++
T Consensus 159 ~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 159 PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322211 1123578899999999998888776322211 123456789999999774 555544333
No 93
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=4.9e-05 Score=91.73 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=109.0
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKL-------------------FDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1344)
-+.++|.+..++.|...+..++.+ .+.++|+.|+||||+|+.+++..--... |..++.+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 356899999999999999876654 4689999999999999999987643211 11112222
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHH----HcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERL----KEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii 285 (1344)
......++ .+..+.+.+ ..+++-++|+|+++.. .....+...+-......++|
T Consensus 95 aas~~~Vd---------------------diR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 95 AASRTKVE---------------------DTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred ccccCCHH---------------------HHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 11111111 222222222 1367789999999876 34454444343333455554
Q ss_pred E-EecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 286 L-TSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 286 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
+ ||....+... ..-...+.+.+++.++....+...+...... ..+.....|++.++|.+- |+..+
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4444444321 2224689999999999999998876322111 123456789999999875 44443
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7.9e-05 Score=89.81 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=108.5
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcC------------------------CCCE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERK------------------------LFDQ 206 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~------------------------~f~~ 206 (1344)
-++++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++..--.. .+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 35689999999999999987665 4678999999999999999987653211 0111
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCC
Q 000701 207 VVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHK 280 (1344)
Q Consensus 207 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~ 280 (1344)
++++.......+ +.+..+.+... .++.-++|+|+++.. ..+..+...+.....
T Consensus 95 ~~eldaas~~~V---------------------d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~ 153 (618)
T PRK14951 95 YTELDAASNRGV---------------------DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153 (618)
T ss_pred eeecCcccccCH---------------------HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCC
Confidence 222222111111 12222333221 245668999999877 345555544444344
Q ss_pred ceEEEEEe-cChHHHH-hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000701 281 GCKILLTS-RDRSVLL-KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 281 ~~~iivTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
.+++|++| ....+.. .......+++++++.++....+.+.+......- ..+....|++.++|.+--+
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDA 222 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 55555554 4333332 223346899999999999999988774322211 1355778899999877433
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.08 E-value=3.7e-05 Score=94.99 Aligned_cols=169 Identities=21% Similarity=0.301 Sum_probs=98.6
Q ss_pred cccccchHHHHH---HHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 000701 152 YEAFESRFSTLR---DIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEK 228 (1344)
Q Consensus 152 ~~~~~gR~~~~~---~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (1344)
.+.|+|++..+. .+.+++..++.+.+.++|++|+||||+|+.+++.... .|. .++... ....++ ++
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~---- 95 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RA---- 95 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HH----
Confidence 456899988774 5777777777778899999999999999999987642 231 111110 011111 11
Q ss_pred hccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEE--ecChH--HHH-hhCCC
Q 000701 229 LGLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLT--SRDRS--VLL-KMGSA 300 (1344)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivT--tR~~~--v~~-~~~~~ 300 (1344)
.+....+.+. .+++.++++||++... ..+.+...+ ..+..++++ |.+.. +.. ...-.
T Consensus 96 ------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 96 ------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred ------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccc
Confidence 1111111111 1467799999998653 333333222 234445543 33321 111 11224
Q ss_pred CcEEccCCCHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHHhCCChH
Q 000701 301 PPFLIGVLNEEEAWRLFKMTAGD------DVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 301 ~~~~l~~L~~~e~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
..+.+.+++.++...++++.+.. .....-.++....|++.+.|..-
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 57999999999999999887631 11111224566788888888643
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.06 E-value=6.7e-05 Score=79.75 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=107.0
Q ss_pred ccccchHHHH---HHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 153 EAFESRFSTL---RDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 153 ~~~~gR~~~~---~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
+++||.++.+ ..|...+.++..+.+.+||++|+||||||+.++..-+... ..||..+....-..-.+.|.++.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 4456665543 2345556678899999999999999999999998765332 55777776654444445554432
Q ss_pred ccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEE--EecChHHHH---hhCCCCcEE
Q 000701 230 GLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILL--TSRDRSVLL---KMGSAPPFL 304 (1344)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiv--TtR~~~v~~---~~~~~~~~~ 304 (1344)
. -...+ .++|.+|.+|+|.....-++ ...++....|..++| ||.+..... .+....++.
T Consensus 214 q--------------~~~~l-~krkTilFiDEiHRFNksQQ-D~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 214 Q--------------NEKSL-TKRKTILFIDEIHRFNKSQQ-DTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred H--------------HHHhh-hcceeEEEeHHhhhhhhhhh-hcccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 1 01112 37889999999986532111 012444556766655 666553322 234456899
Q ss_pred ccCCCHHHHHHHHHHHh---CCC------CCCcc---hHHHHHHHHHHhCCCh
Q 000701 305 IGVLNEEEAWRLFKMTA---GDD------VEHRE---LNSTARNVAMACGGLP 345 (1344)
Q Consensus 305 l~~L~~~e~~~lf~~~~---~~~------~~~~~---~~~~~~~i~~~~~g~P 345 (1344)
|++|+.++...++.+.. ++. .+++. ...+..-++..|.|-.
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 99999999999888743 221 12211 2345566677777764
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=3.4e-06 Score=68.79 Aligned_cols=54 Identities=33% Similarity=0.493 Sum_probs=22.9
Q ss_pred ceEEEeCCCCCCcCC-cccccCCCCcEEEcCCCCCCCc--cccccccccceeecccC
Q 000701 555 LRVVGFSKMQLSSLP-SSMDLLVNLQTLSLDQSMLGDI--AIIGKLKNLEILSMINS 608 (1344)
Q Consensus 555 Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~l~~~ 608 (1344)
|++|++++|.+..+| ..|.++++|++|++++|.+..+ ..+.++.+|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444444443 2344444444444444444333 23344444444444443
No 98
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=3.6e-06 Score=68.66 Aligned_cols=60 Identities=28% Similarity=0.418 Sum_probs=54.0
Q ss_pred CCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCC-cccccCCCCcEEEcCCCCC
Q 000701 526 PKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLP-SSMDLLVNLQTLSLDQSML 588 (1344)
Q Consensus 526 ~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i 588 (1344)
++|+.|.+.++. +..+|.++|.++++|++|++++|.+..+| ..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK---LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST---ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC---CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899998775 78999999999999999999999999885 6799999999999999974
No 99
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=6.3e-05 Score=79.90 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
..+.+.|+|++|+|||+|++.++..... .+++.. .+...+. ..+. +
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~-~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAA-E 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhh-c
Confidence 3567999999999999999988765421 233321 1111111 1111 1
Q ss_pred CeEEEEEeCCCCccc-cccccCcCCC-CCCceEEEEEecC---------hHHHHhhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 253 KKILVVLDNLWKCLN-LETVGIPYGD-DHKGCKILLTSRD---------RSVLLKMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 253 ~~~LlvlDdv~~~~~-~~~l~~~l~~-~~~~~~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
-+|++||++.... -+++...+.. ...|..+|+|++. +....++.....+++++++.++-.+++++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899975421 1112211111 1235678888873 3333455667899999999999999999988
Q ss_pred CCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 322 GDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 322 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
....- .-.+++..-|++.+.|..-++..+
T Consensus 167 ~~~~~-~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 167 ADRQL-YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHcCC-CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 43211 122466777888888777655543
No 100
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=8.4e-05 Score=91.15 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=108.3
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC---EEEEEEcCCC---CCHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD---QVVFSEVSQT---PNIKDIQKEI 225 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~---~~~~~~~~~i 225 (1344)
.+.++|++..++.+.+.+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 346889999999888887766667899999999999999999987765333221 1234433221 1222221111
Q ss_pred ---------------HHHhcccc------------------ccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--ccccc
Q 000701 226 ---------------AEKLGLIL------------------HEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLET 270 (1344)
Q Consensus 226 ---------------~~~l~~~~------------------~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~ 270 (1344)
+...+... -+.-+......+.+.+. ++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 11111100 00011122334444443 56677776655543 24665
Q ss_pred ccCcCCCCCCceEEEE--EecChHH-HHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 271 VGIPYGDDHKGCKILL--TSRDRSV-LLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 271 l~~~l~~~~~~~~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++++.+...... -.+++...|.+.+..-+-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gRr 390 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGRK 390 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHHH
Confidence 5555554444444554 5554321 1111 223467889999999999999887432111 113444455555443345
Q ss_pred HHHHHHH
Q 000701 347 ALTTIAR 353 (1344)
Q Consensus 347 ai~~~~~ 353 (1344)
|+..++.
T Consensus 391 aln~L~~ 397 (615)
T TIGR02903 391 AVNILAD 397 (615)
T ss_pred HHHHHHH
Confidence 5554443
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=6.4e-05 Score=79.58 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
...+.|+|+.|+|||.|.+.+++.......-..+++++. +++...+...+.. .....+.+.+ ..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~--~~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRL--RS 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHH--CT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhh--hc
Confidence 346899999999999999999998775433345677654 5666666655532 1122344444 35
Q ss_pred eEEEEEeCCCCccc---ccc-ccCcCCC-CCCceEEEEEecCh---------HHHHhhCCCCcEEccCCCHHHHHHHHHH
Q 000701 254 KILVVLDNLWKCLN---LET-VGIPYGD-DHKGCKILLTSRDR---------SVLLKMGSAPPFLIGVLNEEEAWRLFKM 319 (1344)
Q Consensus 254 ~~LlvlDdv~~~~~---~~~-l~~~l~~-~~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 319 (1344)
-=+|++||++.... |+. +...+.. ...|-+||+|++.. ....++...-.+++++.+.++..+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 56889999987632 322 1111111 12456799999643 2333556667899999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 320 TAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
.+....-. -.++++.-|++.+.+..-.+..
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHH
Confidence 88422111 2245666777777665544443
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00011 Score=88.94 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=111.1
Q ss_pred CcccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCC--EEEEEEcCCCCCHHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLFD--QVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
.-..++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--..... ...+-.+. .-.-.+.|..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~i~~ 97 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQAIME 97 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHHHhc
Confidence 3457899999999999999876654 689999999999999999998764221110 00000000 0001111111
Q ss_pred Hhcccc-----ccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEe-cChHHHH
Q 000701 228 KLGLIL-----HEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTS-RDRSVLL 295 (1344)
Q Consensus 228 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTt-R~~~v~~ 295 (1344)
.-..+. ......+.+..+.+... ..++-++|+|+++... ....+...+..-.+.+.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 100000 00111222233333322 2456689999997663 3444444444334556655544 4443333
Q ss_pred hh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 296 KM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 296 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
.+ .....+++.+++.++....+.+.+...... -.++....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 234678999999999999998877422211 1135678899999998864433
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=8.6e-05 Score=86.75 Aligned_cols=200 Identities=11% Similarity=0.124 Sum_probs=111.1
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc-CCCCCHHHHHHHHHHHh
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV-SQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l 229 (1344)
-+.++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++...-....+...|... ......-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 356889999999999999876665 5889999999999999999987743211111001000 00000000111111000
Q ss_pred ccc-----cccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEe-cChHHHHhh
Q 000701 230 GLI-----LHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTS-RDRSVLLKM 297 (1344)
Q Consensus 230 ~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTt-R~~~v~~~~ 297 (1344)
..+ .......+.+..+.+.+. .+++-++|+|+++... .++.+...+....+.+.+|++| +...+...+
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 000 000011122223333331 2566789999998663 4555554444444556655554 444433221
Q ss_pred -CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 000701 298 -GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIA 352 (1344)
Q Consensus 298 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 352 (1344)
.....+++.+++.++....+...+..... .-.++.+..|++.++|.+- ++..+-
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12347889999999999888887632111 1124567889999999774 444433
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.97 E-value=0.00012 Score=85.18 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=101.8
Q ss_pred CCCCcccccchHHHHHHHHHHHHc-------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 148 SSTGYEAFESRFSTLRDIRNALTN-------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
|....+.+.|+++.++++.+.+.. ..++-|.++|++|+|||++|+.+++..... |+.+..
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~ 198 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG 198 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh
Confidence 334456788999999999887641 235679999999999999999999876522 222211
Q ss_pred CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------c----cccccCcCC--
Q 000701 215 TPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL------------N----LETVGIPYG-- 276 (1344)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~-- 276 (1344)
.++.... .+ .....+..+++......+.+|++||++... . +..+...+.
T Consensus 199 ----~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 ----SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ----HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1111111 11 112233344444444567899999997641 0 011111111
Q ss_pred CCCCceEEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000701 277 DDHKGCKILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 277 ~~~~~~~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
....+..||.||....... .+ .-...+++.+.+.++..++|+.+........+. ....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 1123567887876543222 11 123578999999999999999887532221111 134566666665
No 105
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.4e-07 Score=91.72 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=34.9
Q ss_pred cccccccceeecccCCCc-ccChhhhccCcccEEeccccccccccChh-hhccCCcCCEEEcccccc
Q 000701 594 IGKLKNLEILSMINSDIV-KLPEAFGLLTKLRLLDLTDCFQLKVIAPN-VLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 594 i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~-~l~~L~~L~~L~l~~~~~ 658 (1344)
++.+.+|+.|.+.|+.+. .+-..|.+=.+|+.|+++.|.+++..... .+.+++.|+.|++++|..
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 344444555555554433 22234555566666666666555443221 246677777777777754
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00026 Score=85.16 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=111.5
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCC---------------------CEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLF---------------------DQVVF 209 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f---------------------~~~~w 209 (1344)
-+.++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--.... ..++.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 356899999999999999876655 57899999999999999999865421100 11222
Q ss_pred EEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceE
Q 000701 210 SEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCK 283 (1344)
Q Consensus 210 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ 283 (1344)
+..+....+++ +..+.+... .+++-++|+|+++.. .....+...+......+.
T Consensus 92 idaas~~gvd~---------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 92 LDAASHGGVDD---------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred eccccccCHHH---------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 22211112222 222222221 256679999999866 345555444444334555
Q ss_pred EEE-EecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 000701 284 ILL-TSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIARALR 356 (1344)
Q Consensus 284 iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l~ 356 (1344)
+|+ ||....+... .+-...+++.+++.++..+.+.+.+......- .++.+..|++..+|-+ -++..+-.++.
T Consensus 151 fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred EEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 554 5444444432 23346899999999999988887764222111 1345677889999976 45555554443
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00084 Score=79.72 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=105.9
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCCEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKER-------------------KLFDQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 211 (1344)
-..++|.+...+.|..++..++.+ .+.++|+.|+||||+|+.++...--. ..+..++++.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 356889999999999999866554 56789999999999999999865310 0111222232
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii 285 (1344)
.+......+ +..+.+... .+++-++|+|+++.. .+...+...+....+...+|
T Consensus 95 aas~~gvd~---------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 95 AASNRGIDD---------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CccCCCHHH---------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 221111111 112222221 256779999999866 23444443343333344555
Q ss_pred E-EecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 286 L-TSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 286 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
+ ||+...+... ......+++.+++.++....+...+...... -..+.+..|++.++|.+..+..
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 4 4444333322 2234578999999999998888876322111 1234577888999997654333
No 108
>PF14516 AAA_35: AAA-like domain
Probab=97.94 E-value=0.0007 Score=76.88 Aligned_cols=200 Identities=13% Similarity=0.152 Sum_probs=120.5
Q ss_pred CCCcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-----CCHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-----PNIKDIQK 223 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 223 (1344)
+.+.+.+|.|...-+++.+.+.+ ....+.|.|+-.+|||+|...+.+..+.. .+ .++++++... .+.+.+++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHH
Confidence 34456678998666777777763 25689999999999999999999888754 23 4557776542 24565555
Q ss_pred HHHHH----hcccccc-------c-cHHHHHHHHHHHHH--cCCeEEEEEeCCCCccc--------------cccccCcC
Q 000701 224 EIAEK----LGLILHE-------E-TVSRRASRLYERLK--EEKKILVVLDNLWKCLN--------------LETVGIPY 275 (1344)
Q Consensus 224 ~i~~~----l~~~~~~-------~-~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~--------------~~~l~~~l 275 (1344)
.++.. ++....- . ........+.+.+. .+++.+|++|+++..-. |..-....
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 55444 4432210 0 11111222333332 26899999999986522 11110100
Q ss_pred CCCCCceEEEEEecChH-HHH-----hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000701 276 GDDHKGCKILLTSRDRS-VLL-----KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALT 349 (1344)
Q Consensus 276 ~~~~~~~~iivTtR~~~-v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 349 (1344)
+ .-..-++++....+. ... .+.....++|.+++.+|...|....-... . ....++|...+||+|.-+.
T Consensus 164 ~-~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-~----~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 P-IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-S----QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred c-ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-C----HHHHHHHHHHHCCCHHHHH
Confidence 0 011122222222111 111 12234578999999999999988764321 1 1228899999999999999
Q ss_pred HHHHHHhc
Q 000701 350 TIARALRN 357 (1344)
Q Consensus 350 ~~~~~l~~ 357 (1344)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99999974
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00023 Score=86.41 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=108.4
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC----------------EEEEEEcCC
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFD----------------QVVFSEVSQ 214 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~----------------~~~wv~~~~ 214 (1344)
-..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..--....+ .++++....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 35688999999999999987664 4668999999999999999987653211000 011111111
Q ss_pred CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceE-EEEE
Q 000701 215 TPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCK-ILLT 287 (1344)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~-iivT 287 (1344)
... .+.+..+.+... .+++-++|+|+++.. .++..+...+......+. |++|
T Consensus 97 n~~---------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 97 NNG---------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCC---------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 111 122233333332 256779999999866 345555444433333444 4455
Q ss_pred ecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 000701 288 SRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIA 352 (1344)
Q Consensus 288 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 352 (1344)
++...+... ......+++.+++.++....+...+...... -..+.+..|++.++|.+. |+..+-
T Consensus 156 te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 156 TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555544432 2334689999999999998888766322111 113457789999998764 444444
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00069 Score=70.47 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred CcccccchHHHHHHHHHHHH-----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALT-----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
.-..|+|.++.++.+.=++. .....-|.++|++|.||||||.-+++...+. +. ++-+....-..-+..+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----ecccccccChhhHHHH
Confidence 34679999988888776665 2345689999999999999999999998755 21 1111111111111111
Q ss_pred HHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---------ccccccCc-CCCCC-----------CceEE
Q 000701 226 AEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---------NLETVGIP-YGDDH-----------KGCKI 284 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~~-l~~~~-----------~~~~i 284 (1344)
...+ ...=++.+|+++... +.+.+... ....+ +-+-|
T Consensus 98 --------------------Lt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 --------------------LTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred --------------------HhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 1122 223344556554331 01110000 00011 22235
Q ss_pred EEEecChHHHHhh--CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 000701 285 LLTSRDRSVLLKM--GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIAR 353 (1344)
Q Consensus 285 ivTtR~~~v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 353 (1344)
=-|||...+.... .-....+++..+.+|-.++..+.+..-.. .-.++.+.+|++...|-|--..-+-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 5688866544422 22347789999999999999988842111 11235688999999999964444333
No 111
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=1.8e-05 Score=97.97 Aligned_cols=102 Identities=23% Similarity=0.428 Sum_probs=70.4
Q ss_pred cceEEEeCCCCCC-cCCcccccCCCCcEEEcCCCCCCC-c-cccccccccceeecccCCCc-ccChhhhccCcccEEecc
Q 000701 554 MLRVVGFSKMQLS-SLPSSMDLLVNLQTLSLDQSMLGD-I-AIIGKLKNLEILSMINSDIV-KLPEAFGLLTKLRLLDLT 629 (1344)
Q Consensus 554 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 629 (1344)
.++.|+|++|.+. .+|..++.+.+|++|+|++|.+.. + ..++.+.+|++|++++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677778777775 567777888888888888887764 3 56777788888888877765 677777778888888887
Q ss_pred ccccccccChhhhcc-CCcCCEEEcccc
Q 000701 630 DCFQLKVIAPNVLSS-LIRLEELYMRNC 656 (1344)
Q Consensus 630 ~~~~l~~~~~~~l~~-L~~L~~L~l~~~ 656 (1344)
+|.....+|.. ++. +.++..+++.+|
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 77444456655 443 234555555554
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=0.00011 Score=79.11 Aligned_cols=171 Identities=12% Similarity=0.157 Sum_probs=97.6
Q ss_pred cccc-chHH-HHHHHHHHHH-cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 153 EAFE-SRFS-TLRDIRNALT-NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 153 ~~~~-gR~~-~~~~l~~~l~-~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
+.|+ |+.. .+..+.++.. ....+.+.|+|+.|+|||+||+.+++...... ..+++++..... .. +
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~~----~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------LA----F 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------HH----H
Confidence 3444 4433 3444555444 23456889999999999999999998764321 234555543311 00 0
Q ss_pred ccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccc--cccCcCCC-CCCce-EEEEEecChHHHH--------hh
Q 000701 230 GLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLNLE--TVGIPYGD-DHKGC-KILLTSRDRSVLL--------KM 297 (1344)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~--~l~~~l~~-~~~~~-~iivTtR~~~v~~--------~~ 297 (1344)
... ...-++|+||++....+. .+...+.. ...+. .+|+|++...... .+
T Consensus 86 -----------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 -----------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred -----------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 233478899997653222 22222211 11233 4666666432211 23
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARAL 355 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 355 (1344)
.....+++.++++++-..++.+.+..... .--++....+++...|.+..+..+...+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33468899999998877777765522111 1124567788888999988777666554
No 113
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00035 Score=75.02 Aligned_cols=190 Identities=17% Similarity=0.207 Sum_probs=113.1
Q ss_pred HHHHHHHHHHc---CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC----EEEEEEcCCCCCHHHHHHHHHHHhcccc
Q 000701 161 TLRDIRNALTN---ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD----QVVFSEVSQTPNIKDIQKEIAEKLGLIL 233 (1344)
Q Consensus 161 ~~~~l~~~l~~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (1344)
.++.+.+.+.. .+.+-+.|+|.+|+|||++++++...+-....-+ .|+.+.....++...+...|+.+++...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34555555552 3446799999999999999999998765432112 4778888899999999999999999877
Q ss_pred ccccHHHH-HHHHHHHHHcCCeEEEEEeCCCCccc---------cccccCcCCCCCCceEEEEEecChHHHHhh-----C
Q 000701 234 HEETVSRR-ASRLYERLKEEKKILVVLDNLWKCLN---------LETVGIPYGDDHKGCKILLTSRDRSVLLKM-----G 298 (1344)
Q Consensus 234 ~~~~~~~~-~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~iivTtR~~~v~~~~-----~ 298 (1344)
........ ...+...+..-+--+||+|++.+.-. +..+ ..+.....-+-|.|-|+.-.-+-.. +
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 54333333 33344445455667899999987521 1111 1122222334456655533222110 1
Q ss_pred CCCcEEccCCCH-HHHHHHHHHHh---C-CCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 299 SAPPFLIGVLNE-EEAWRLFKMTA---G-DDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 299 ~~~~~~l~~L~~-~e~~~lf~~~~---~-~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
-...+.+..-.. +|...|+...- . ....+-...+++..|...++|..--+..+
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 123344444332 34445544332 1 22223345788999999999987544443
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.3e-05 Score=59.45 Aligned_cols=42 Identities=31% Similarity=0.506 Sum_probs=29.7
Q ss_pred CcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCcccc
Q 000701 553 RMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAII 594 (1344)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i 594 (1344)
++|++|++++|.|+++|..+++|++|++|++++|.+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 467788888888888877777888888888887777665444
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00024 Score=86.08 Aligned_cols=200 Identities=13% Similarity=0.149 Sum_probs=110.0
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE-cCCCCCHHHHHHHHHHHh
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSE-VSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 229 (1344)
-..++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--....+...|.. +......-...+.+...-
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 356899999999999999876654 588999999999999999998764321111001110 000000001111111100
Q ss_pred cccc---c--cccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEE-EEecChHHHH-h
Q 000701 230 GLIL---H--EETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKIL-LTSRDRSVLL-K 296 (1344)
Q Consensus 230 ~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ii-vTtR~~~v~~-~ 296 (1344)
..+. + .....+.+..+.+.+. .+++-++|+|+++... +.+.+...+..-...+.+| +|++...+.. .
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 0 0011222333333331 2566789999998763 3444444443333445544 4544444433 2
Q ss_pred hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 000701 297 MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIA 352 (1344)
Q Consensus 297 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 352 (1344)
......+++.+++.++....+.+.+...... -.++.+..|++.++|..- |+..+-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3345689999999999888888766321111 113567889999999654 444443
No 116
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2.4e-06 Score=101.05 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=71.2
Q ss_pred hcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhhhccCcccEEecc
Q 000701 550 KEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLT 629 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 629 (1344)
+.++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.+..++. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 566777777777777776655566777777777777777777777777777777777777665543 4457777777777
Q ss_pred ccccccccCh-hhhccCCcCCEEEcccccc
Q 000701 630 DCFQLKVIAP-NVLSSLIRLEELYMRNCFV 658 (1344)
Q Consensus 630 ~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~ 658 (1344)
+| .+..+.. . +..+.+++.+.+.++.+
T Consensus 171 ~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 77 5555544 2 35666666666666544
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00034 Score=82.75 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=108.6
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCC------------------C-CEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKL------------------F-DQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~------------------f-~~~~wv~ 211 (1344)
-+.++|-+...+.|..++..++.+ +..++|+.|+||||+|+.+++..--... + ..++.+.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 356899999999999999877665 5689999999999999999887631110 1 1122332
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEec
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSR 289 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR 289 (1344)
......++++.. ++..... .-..+++-++|+|+++.. ++...+...+....+.+++|++|.
T Consensus 93 aas~~gId~IRe-lie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 93 AASNRGIDDIRE-LIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred cccccCHHHHHH-HHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 222122222221 1111100 000156679999999876 334444444433345566666665
Q ss_pred Ch-HHHH-hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 290 DR-SVLL-KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 290 ~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
+. .+.. .......+++.+++.++....+...+......- .++.+..|++.++|.+.-+..
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHH
Confidence 43 2221 112246889999999999999887764322111 245678899999998854433
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=0.00012 Score=93.04 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=104.5
Q ss_pred CcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----CEEE-EEEcCCCCCHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLF----DQVV-FSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~-wv~~~~~~~~~~~~~~i 225 (1344)
..+.++||+++++++++.|......-+.++|++|+||||+|+.++++....... +..+ .+.++.-..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------- 256 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------- 256 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--------
Confidence 346799999999999999887666678899999999999999999987533211 1222 233321000
Q ss_pred HHHhccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCccc-------cc--cccCcCCCCCCceEEEEEecChHHHH
Q 000701 226 AEKLGLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKCLN-------LE--TVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~-------~~--~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
+.. .....++.+..+++... .+++.+|++|+++.... -+ .+..+... ....++|-||.......
T Consensus 257 ----g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 257 ----GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYKK 330 (852)
T ss_pred ----ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHhh
Confidence 000 00112233444444443 25789999999876521 11 12222221 22356666666533211
Q ss_pred -------hhCCCCcEEccCCCHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHhCCCh
Q 000701 296 -------KMGSAPPFLIGVLNEEEAWRLFKMTAGD---DVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 296 -------~~~~~~~~~l~~L~~~e~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
...-...+.+++++.++..++++..... ...-.-.++....+++.+++..
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 1123468999999999999997655421 1111112344556666665443
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00033 Score=81.71 Aligned_cols=185 Identities=13% Similarity=0.179 Sum_probs=106.6
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc------CCCCE-EEEEEcCCCCCHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER------KLFDQ-VVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~ 223 (1344)
-+.++|.+..++.+.+++..+.. +.+.++|+.|+|||++|+.+++..... ..|.. ++-+......+.+++ +
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-R 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-H
Confidence 35689999999999999986654 478899999999999999998876431 11211 111111111112221 1
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEe-cChHHHHh-hCC
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTS-RDRSVLLK-MGS 299 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTt-R~~~v~~~-~~~ 299 (1344)
++...+... -. .+++-++++|+++... .+..+...+......+.+|++| +...+... ...
T Consensus 95 ~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 95 NLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 222211100 00 1456689999987653 3444433333223345555555 33333221 223
Q ss_pred CCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHH
Q 000701 300 APPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIARA 354 (1344)
Q Consensus 300 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 354 (1344)
...+++.++++++....+...+...... -.++.+..|++.++|.+- ++..+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578999999999998888866322111 113567888889998654 44444433
No 120
>PRK05642 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.00024 Score=76.34 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|+.|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+. +-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~-~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLE-QY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhh-hC-
Confidence 578999999999999999998876543 24577776532 2111 012333343 22
Q ss_pred EEEEEeCCCCc---ccccc-ccCcCCC-CCCceEEEEEecChHH---------HHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKC---LNLET-VGIPYGD-DHKGCKILLTSRDRSV---------LLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~---~~~~~-l~~~l~~-~~~~~~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
=+||+||+... ..|+. +...+.. ...|.++|+|++...- ..++.....+++++++.++-.++++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 26889999744 24443 3222221 1235678888874322 123344567899999999999999866
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000701 321 AGDDVEHRELNSTARNVAMACGGLPIALTTIA 352 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 352 (1344)
+.... -.-.+++..-|++.+.|-.-++..+-
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 63221 11124667778887777655444433
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=0.00019 Score=90.89 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=94.9
Q ss_pred CcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC---C-CEEEEEEcCCCCCHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKL---F-DQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
..+.++||+++++.+++.|......-+.++|++|+|||++|+.++++...... + +..+|. + +...+ .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----L 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----h
Confidence 34579999999999999988666667889999999999999999998754321 1 223332 1 11111 1
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------cccccCcCCCCCCceEEEEEecChHHHH-
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----------LETVGIPYGDDHKGCKILLTSRDRSVLL- 295 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------~~~l~~~l~~~~~~~~iivTtR~~~v~~- 295 (1344)
.. ... ....+..+..+++.+.+.++.+|++|+++.... ...+..+.... ...++|-+|.......
T Consensus 251 a~--~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 251 AG--TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKNH 326 (731)
T ss_pred hh--ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHHH
Confidence 10 000 012334555666666545688999999875421 11111122111 2345555555322111
Q ss_pred ------hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 296 ------KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 296 ------~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
...-...++++.++.++..++++...
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11224578999999999999998665
No 122
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=2.7e-06 Score=100.62 Aligned_cols=169 Identities=24% Similarity=0.288 Sum_probs=120.3
Q ss_pred CCCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccc
Q 000701 522 GLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLE 601 (1344)
Q Consensus 522 ~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~ 601 (1344)
...+.+|..|.+.++. +..+... +..+.+|++|++++|.|..+. .+..+..|+.|++.+|.+..+..+..+.+|+
T Consensus 91 l~~~~~l~~l~l~~n~---i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK---IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccc---hhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhh
Confidence 3467778888887765 4555542 478999999999999999984 4788888999999999999998888999999
Q ss_pred eeecccCCCcccChh-hhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCC
Q 000701 602 ILSMINSDIVKLPEA-FGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHL 680 (1344)
Q Consensus 602 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l 680 (1344)
.+++++|.+..+... ...+.+|+.+++.++ .+..+.. +..+..+..+++..+.+. .+.++..+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i~-------------~~~~l~~~ 229 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKIS-------------KLEGLNEL 229 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccce-------------eccCcccc
Confidence 999999998877764 588999999999998 5554433 445555555555555431 22223333
Q ss_pred CC--CcEEEEEeCCCCCCCCcc-ccccCceeEEE
Q 000701 681 PR--LTSLEIDIGNDDILPEGF-FSRRLENFKIS 711 (1344)
Q Consensus 681 ~~--L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 711 (1344)
.. |+.+++.++.....+..+ .+..+..+++.
T Consensus 230 ~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred hhHHHHHHhcccCccccccccccccccccccchh
Confidence 33 777888877766553222 34444444443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00028 Score=88.50 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=110.5
Q ss_pred ccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCC---------------------CCEEEEE
Q 000701 153 EAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKL---------------------FDQVVFS 210 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~---------------------f~~~~wv 210 (1344)
..++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+--... +..++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 56899999999999999876654 5789999999999999999987742111 0112233
Q ss_pred EcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEe
Q 000701 211 EVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTS 288 (1344)
Q Consensus 211 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTt 288 (1344)
.......++++. ++.+.+ ...-..+++-++|||+++.. .....+...+..-...+.+|++|
T Consensus 95 daas~~~Vd~iR-~l~~~~----------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 95 DAASHGGVDDAR-ELRERA----------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cccccCCHHHHH-HHHHHH----------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 222222222221 111111 10111356678999999877 34455554444444455555555
Q ss_pred -cChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHH
Q 000701 289 -RDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTIARA 354 (1344)
Q Consensus 289 -R~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 354 (1344)
....+... ......+++..++.++..+.+.+.+....... -.+....|++.++|.+. ++..+-.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444332 23346789999999999988888763222111 13456788999999874 44444333
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.0002 Score=84.47 Aligned_cols=164 Identities=11% Similarity=0.133 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|..|+|||+|++.+++.......-..+++++. +++...+...++.. .+....+.+.+ ...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~--~~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEI--CQN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHh--ccC
Confidence 46899999999999999999997664332334556543 56667776665421 01223333333 234
Q ss_pred EEEEEeCCCCcc---cc-ccccCcCCC-CCCceEEEEEecCh---------HHHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCL---NL-ETVGIPYGD-DHKGCKILLTSRDR---------SVLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~---~~-~~l~~~l~~-~~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
-+||+||+.... .+ +.+...+.. ...+..||+|+... .+..++...-.+.+++++.++..+++++.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 588999997552 12 222222211 12344688887632 22234555678889999999999999998
Q ss_pred hCCCCC-CcchHHHHHHHHHHhCCChHHHHHHH
Q 000701 321 AGDDVE-HRELNSTARNVAMACGGLPIALTTIA 352 (1344)
Q Consensus 321 ~~~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~ 352 (1344)
+..... ..-.+++..-|++.++|.|-.+.-+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 843211 12335778899999999987665544
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00045 Score=84.45 Aligned_cols=181 Identities=13% Similarity=0.175 Sum_probs=110.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhh---------------------cCCCCEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKE---------------------RKLFDQVVF 209 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~---------------------~~~f~~~~w 209 (1344)
-+.++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.++...-- ..+|+. ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 356899999999999999876654 5789999999999999999886531 123332 22
Q ss_pred EEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEE-
Q 000701 210 SEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILL- 286 (1344)
Q Consensus 210 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iiv- 286 (1344)
+........+++. .++.++.... ..+++-++|+|+++... ++..+...+..-...+.+|+
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3322222222222 1112111000 02566789999998763 44555444443334555554
Q ss_pred EecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 287 TSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 287 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
|++...+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|-.- |+..+
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5454444432 2334679999999999999998876432211 113457889999999764 44444
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00049 Score=84.53 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-+.++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-..... ...........+.+.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 35689999999999999886654 4678999999999999999998764211100 0000111122222222111
Q ss_pred ccc---c--cccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEec-ChHHHHh-h
Q 000701 231 LIL---H--EETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSR-DRSVLLK-M 297 (1344)
Q Consensus 231 ~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR-~~~v~~~-~ 297 (1344)
.+. + .....+.+..+.+.+. ..++-++|+|+++.. +..+.+...+......+.+|+++. ...+... .
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 100 0 0011122223333222 256779999999765 334444444433334555665554 3333321 2
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
.....+++.+++.++....+.+.+......- .++.+..|++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2345788999999999988888774322111 135678899999998864433
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.84 E-value=0.00014 Score=80.05 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=81.5
Q ss_pred ccccchHHHHHHHHHH---HH------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 153 EAFESRFSTLRDIRNA---LT------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~---l~------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
..++|.+..++.+.+. +. .+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3578887776665533 31 12345688999999999999999998764221111112233222
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------ccccccCcCCCCCCceEEEEE
Q 000701 218 IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL----------NLETVGIPYGDDHKGCKILLT 287 (1344)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~~~~iivT 287 (1344)
.++... ..+ .. ...+..+++.. ..-+|++|+++... ..+.+...+........+|++
T Consensus 83 -~~l~~~---~~g-----~~-~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 -ADLVGE---YIG-----HT-AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -HHhhhh---hcc-----ch-HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111111 111 11 11122233222 23488999997532 222233333333334456666
Q ss_pred ecChHHHH--------hhCCCCcEEccCCCHHHHHHHHHHHhC
Q 000701 288 SRDRSVLL--------KMGSAPPFLIGVLNEEEAWRLFKMTAG 322 (1344)
Q Consensus 288 tR~~~v~~--------~~~~~~~~~l~~L~~~e~~~lf~~~~~ 322 (1344)
+....... .-.....+++.+++.+|..+++++.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 55432211 111124688999999999999988774
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0004 Score=81.95 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=107.6
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcC---------------------CCCEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERK---------------------LFDQVVF 209 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~---------------------~f~~~~w 209 (1344)
-+.++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++..--.. +++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 35689999999999999987665 5688999999999999999998763211 111 122
Q ss_pred EEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEE
Q 000701 210 SEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLT 287 (1344)
Q Consensus 210 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivT 287 (1344)
+........+++ +.+.+.+. ..-..+++-++|+|+++... ..+.+...+......+.+|++
T Consensus 95 i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 95 IDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred eeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 221111112221 11211111 00012567789999987552 333343333333345556655
Q ss_pred ec-ChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000701 288 SR-DRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIAR 353 (1344)
Q Consensus 288 tR-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 353 (1344)
|. ...+... ......+++.++++++....+...+...... -.++.+..|++.++|.+ .|+..+-.
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 53 3333221 2234578999999999998888776322111 12356788999999966 45554443
No 129
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0014 Score=73.41 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=111.8
Q ss_pred ccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc-------------CCCCEEEEEEcCCCCCH
Q 000701 153 EAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER-------------KLFDQVVFSEVSQTPNI 218 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~-------------~~f~~~~wv~~~~~~~~ 218 (1344)
..++|.+..++.+.+.+..++. +...++|+.|+||+++|..+++..--. ...+-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4578999999999999987764 789999999999999999998875321 11223344432100000
Q ss_pred HHHHHHHHHHhcc--ccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecC
Q 000701 219 KDIQKEIAEKLGL--ILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 219 ~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
..+-..-+...+. .....-..+.+..+.+.+. .+++-++|+|+++... +...+...+-.-....-|++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0000011111110 0000111223344444443 3677899999997663 333333333222233345555554
Q ss_pred hHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 291 RSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 291 ~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
+.+... .+-...+++.+++.++..+.+.+....... +.....++..++|.|..+..+
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 444332 233468999999999999999987532111 111357889999999765443
No 130
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=8.6e-05 Score=83.00 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC--CCHHHHHHHHHHHhccccccccHHH------HHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT--PNIKDIQKEIAEKLGLILHEETVSR------RAS 243 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~ 243 (1344)
+....++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-....+..... .+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 455789999999999999999999988754 7999999999866 7899999998544322211111111 111
Q ss_pred HHHHHH-HcCCeEEEEEeCCCCc
Q 000701 244 RLYERL-KEEKKILVVLDNLWKC 265 (1344)
Q Consensus 244 ~l~~~l-~~~~~~LlvlDdv~~~ 265 (1344)
...+++ .++++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2589999999999754
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00022 Score=81.48 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=85.8
Q ss_pred CcccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 151 GYEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
..+.++|.++..+.+.+++..+.. .++.++|++|+|||++|+.+++.... .+..++.+. .....+...+ ..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l-~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRL-TRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHH-HHH
Confidence 346789999999999999986654 56667999999999999999887531 133444444 2222211111 111
Q ss_pred ccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCcc---ccccccCcCCCCCCceEEEEEecChHHH-H-hhCCCCcE
Q 000701 230 GLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKCL---NLETVGIPYGDDHKGCKILLTSRDRSVL-L-KMGSAPPF 303 (1344)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~iivTtR~~~v~-~-~~~~~~~~ 303 (1344)
..... .+.+-++|+||++... ....+...+.....++++|+||...... . ..+....+
T Consensus 92 ----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 92 ----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred ----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 01110 1345689999997651 1122222232334567888888643211 1 11223467
Q ss_pred EccCCCHHHHHHHHHH
Q 000701 304 LIGVLNEEEAWRLFKM 319 (1344)
Q Consensus 304 ~l~~L~~~e~~~lf~~ 319 (1344)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777888887766554
No 132
>PLN03150 hypothetical protein; Provisional
Probab=97.81 E-value=4.3e-05 Score=94.74 Aligned_cols=106 Identities=21% Similarity=0.326 Sum_probs=87.6
Q ss_pred CcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCC-cCCcccccCCCCcEEEcCCCCCCC-c-ccccccccccee
Q 000701 527 KLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLS-SLPSSMDLLVNLQTLSLDQSMLGD-I-AIIGKLKNLEIL 603 (1344)
Q Consensus 527 ~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L 603 (1344)
.++.|.+.++.. ...+|.. |..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. + ..+++|.+|++|
T Consensus 419 ~v~~L~L~~n~L--~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL--RGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc--cccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 367777776653 3456765 589999999999999997 789999999999999999999875 3 779999999999
Q ss_pred ecccCCCc-ccChhhhcc-CcccEEecccccccc
Q 000701 604 SMINSDIV-KLPEAFGLL-TKLRLLDLTDCFQLK 635 (1344)
Q Consensus 604 ~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~ 635 (1344)
++++|.+. .+|..++.+ .++..+++.+|..+-
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 99999876 889888764 567788888874443
No 133
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=4.5e-05 Score=85.71 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=31.7
Q ss_pred cccccEEEEccCcCChhhhhhhhhccCC-CccEEEEccCcchhhhcccccccccccCCccccccccccceEecCCCCccc
Q 000701 766 FNELRTMKIENCDKLSNIFLLSATNCLP-GLERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLS 844 (1344)
Q Consensus 766 l~~L~~L~L~~c~~l~~l~~~~~l~~l~-~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 844 (1344)
+.+++.|++++| .++.+| .+| +|++|.+.+|..++.++.. ..++|+.|.+.+|.++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~~---------------LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPGS---------------IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCch---------------hhhhhhheEccCccccc
Confidence 456667777766 455442 233 4666666666666555431 13456666666665544
No 134
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.2e-06 Score=88.31 Aligned_cols=167 Identities=21% Similarity=0.186 Sum_probs=96.4
Q ss_pred hhccchHhhhhcccchhcccccCCCcccCCCceEEEEE-cCCcccccchhHHhhcCCcceEEEE-cCceeeEecCCCccc
Q 000701 1052 KIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVW-HDDLAAGFPVGLLEVLCSLENLVLS-CNSYEEIFSNEGCLE 1129 (1344)
Q Consensus 1052 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~~~~l~~l~~L~~L~l~-c~~l~~~~~~~~~~~ 1129 (1344)
..+..|+.|.+.++.+++..-..++.. .+|..|+++ |+.++.....-++.+|+.|.+|.++ |.-.++....
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv----- 279 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV----- 279 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----
Confidence 457888889999988766433333332 789999999 9999987777888999999999999 8655432110
Q ss_pred cccccccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccccccccccC-CcccccccccEEEEecCCCccc
Q 000701 1130 KHVDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPL-SSSISFGNLTHLVVHDCEKLVS 1208 (1344)
Q Consensus 1130 ~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~C~~L~~ 1208 (1344)
.+ .+ + -+.|..|+++||..--..... .-...+++|.+||+++|..|+.
T Consensus 280 ---~V--------------~h----i----------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 280 ---AV--------------AH----I----------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred ---HH--------------hh----h----------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 00 00 0 124555555554321110000 0123566666777777666655
Q ss_pred ccchhhHhhhcccceEEEcccccceEEeeccCCCCchhhhhcCcceEEeCccceeeeccCCCc
Q 000701 1209 LVTCSVAKSLERLVMLSISGCSAMRQVIIGCGQGDSDIAAANLKEEIVFSKLRYIGLLDLENL 1271 (1344)
Q Consensus 1209 l~~~~~~~~L~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 1271 (1344)
-. ...+..++.|++|.++.|..+.. + .+-....-|+|.+|++.+|-.=
T Consensus 329 ~~-~~~~~kf~~L~~lSlsRCY~i~p--~------------~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 329 DC-FQEFFKFNYLQHLSLSRCYDIIP--E------------TLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hH-HHHHHhcchheeeehhhhcCCCh--H------------HeeeeccCcceEEEEeccccCc
Confidence 22 12334566667777776654321 1 1111112567777777776553
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.77 E-value=0.00012 Score=76.85 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=112.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEE-EEEcCCCCCHHHHHHHHH--HH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVV-FSEVSQTPNIKDIQKEIA--EK 228 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~--~~ 228 (1344)
.+.++|.+..+..|...+.....+....+||+|.|||+-|..++...--.+.|.+.+ =.+++......-+..++- .+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fak 114 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAK 114 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHH
Confidence 456889999999999999887789999999999999999999998775555565433 234444333221111110 00
Q ss_pred hccccccccHHHHHHHHHHHHHcCCe-EEEEEeCCCCc--cccccccCcCCCCCCceE-EEEEecChHHHHh-hCCCCcE
Q 000701 229 LGLILHEETVSRRASRLYERLKEEKK-ILVVLDNLWKC--LNLETVGIPYGDDHKGCK-ILLTSRDRSVLLK-MGSAPPF 303 (1344)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~~l~~~~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~-iivTtR~~~v~~~-~~~~~~~ 303 (1344)
+...... .... .-++ -.+|||+++.. ++|..+..-.......++ |+||+--..+... ..-...+
T Consensus 115 l~~~~~~---------~~~~--~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 115 LTVLLKR---------SDGY--PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred Hhhcccc---------ccCC--CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 0000000 0000 1233 57889999877 678877655544444555 5555543333322 1223468
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000701 304 LIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 304 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
..++|.+++...-++..+......-+ .+..+.|++.++|-
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGD 223 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCc
Confidence 89999999999988888853332222 34577888888885
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00081 Score=82.22 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=108.5
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..--..... ... .....-...+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC----CCCcccHHHHHHhcCCC
Confidence 35688999999999999986654 6788999999999999999998764221110 000 00111122222221111
Q ss_pred ccc-----ccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEE-EecChHHHHh-h
Q 000701 231 LIL-----HEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILL-TSRDRSVLLK-M 297 (1344)
Q Consensus 231 ~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiv-TtR~~~v~~~-~ 297 (1344)
.+. ......+.+..+.+... .+++-++|+|+++.. +....+...+..-...+.+|+ |+....+... .
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 100 00111222333333322 255678999999866 345555444433334454444 4443333322 2
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALT 349 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 349 (1344)
.....+++.+++.++....+.+.+......- -.+.+..|++.++|.+..+.
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 2345788889999998888877664321111 12457889999999875443
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.77 E-value=0.00043 Score=81.49 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHc-------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC---CCEEEEEE
Q 000701 148 SSTGYEAFESRFSTLRDIRNALTN-------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKL---FDQVVFSE 211 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~ 211 (1344)
|......+.|.+..++++.+.+.- ..++-+.++|++|+|||++|+.+++....... .....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 333445677899999888887641 23456999999999999999999998753211 12344554
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHH----HcCCeEEEEEeCCCCcc---------cc-----ccccC
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERL----KEEKKILVVLDNLWKCL---------NL-----ETVGI 273 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~---------~~-----~~l~~ 273 (1344)
+... +++... .+ . ....+..+++.. ..++++++++|+++... +. ..+..
T Consensus 257 v~~~----eLl~ky---vG-----e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 257 IKGP----ELLNKY---VG-----E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred ccch----hhcccc---cc-----h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 4331 111110 00 0 111122232222 23578999999997541 11 11211
Q ss_pred cCCC--CCCceEEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCC
Q 000701 274 PYGD--DHKGCKILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGD 323 (1344)
Q Consensus 274 ~l~~--~~~~~~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 323 (1344)
.+.. ...+..||.||....... .+ .-...+++...+.++..++|+.+...
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1211 123555666765443222 11 22346899999999999999998754
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.00023 Score=91.28 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=95.3
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEcCCCCCHHHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKL----FDQVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
.+.++||+++++++++.|......-+.++|++|+|||++|+.++........ -+..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 3568999999999999998666666789999999999999999988753211 1233442 1 111111 1
Q ss_pred HhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc---------cccccCcCCCCCCceEEEEEecChHHHH---
Q 000701 228 KLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN---------LETVGIPYGDDHKGCKILLTSRDRSVLL--- 295 (1344)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~iivTtR~~~v~~--- 295 (1344)
|... ....++.+..+++.+...++.+|++|+++.... ...+..+... ....++|.+|.......
T Consensus 249 --g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHHh
Confidence 1111 122344566666666556789999999964421 1111111111 12345666666544321
Q ss_pred ----hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 296 ----KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 296 ----~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.......+.+...+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 12234567888899999888887543
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.76 E-value=0.00087 Score=72.68 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=105.4
Q ss_pred ccccchHHHHHHHHHHHHcCC--Ce-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 153 EAFESRFSTLRDIRNALTNAN--AG-IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~--~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
+.|.+|+.++..+...+.+.. .+ .|.|+|.+|.|||.+.+++.+..... .+|+++-+-++...++.+|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 568899999999999987433 33 45899999999999999999877432 57999999999999999999998
Q ss_pred c-cccccccHH---HHHHHHHHHHH-------cCCeEEEEEeCCCCccccccccCc----CC--CCCCceEEEEEecChH
Q 000701 230 G-LILHEETVS---RRASRLYERLK-------EEKKILVVLDNLWKCLNLETVGIP----YG--DDHKGCKILLTSRDRS 292 (1344)
Q Consensus 230 ~-~~~~~~~~~---~~~~~l~~~l~-------~~~~~LlvlDdv~~~~~~~~l~~~----l~--~~~~~~~iivTtR~~~ 292 (1344)
+ .+.++.... +........+. .++.++||||+++...+.++...+ +. ...+. -+|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEecccc
Confidence 6 222222111 12222222221 246899999999877554432110 00 01222 2344443221
Q ss_pred HHH---hhCCC--CcEEccCCCHHHHHHHHHHHh
Q 000701 293 VLL---KMGSA--PPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 293 v~~---~~~~~--~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
... .+++. .++.....+.+|...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 111 23433 356678899999999987655
No 140
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0016 Score=70.23 Aligned_cols=201 Identities=19% Similarity=0.262 Sum_probs=124.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 146 LQSSTGYEAFESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 146 ~~~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
..|...+..+=|-++.+++|.+.+. =+.++-|.++|++|.|||-||+.|+++.... |+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRV 216 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEe
Confidence 3444556667788999999998875 1356789999999999999999999987644 3333
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------------cccccCcCC
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----------------LETVGIPYG 276 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~ 276 (1344)
.. .++.++. +| .....+..+++...+..+.+|.+|.++.... .-++...+.
T Consensus 217 vg----SElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 217 VG----SELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred cc----HHHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 22 1222221 22 1234455666666667889999999875411 111111121
Q ss_pred C--CCCceEEEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHHhCCCh--
Q 000701 277 D--DHKGCKILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTAGDD--VEHRELNSTARNVAMACGGLP-- 345 (1344)
Q Consensus 277 ~--~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~g~P-- 345 (1344)
. .....|||.+|...++.. ...-.+.+++..-+.+.-.++|+-+...- ...-++ +.+++.+.|.-
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGA 359 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGA 359 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchH
Confidence 1 245689999887554443 22344678888777777788888887532 223343 45666676664
Q ss_pred --HHHHHHHHHHh---cC---CHHHHHHHHHHh
Q 000701 346 --IALTTIARALR---NR---SMREWKNALQQL 370 (1344)
Q Consensus 346 --lai~~~~~~l~---~~---~~~~w~~~l~~l 370 (1344)
-|+.+=|++++ .+ +.+++..+.+..
T Consensus 360 dlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 360 DLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 46667777765 22 455555555543
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.001 Score=73.48 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.++|++|+|||++|+.+++.......-...-|+.++ ..++.... .|. .. .....+++.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~-----~~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGH-----TA-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hcc-----ch-HHHHHHHHHc---cC
Confidence 358899999999999999999876432221111244443 12222211 111 11 1112233322 23
Q ss_pred EEEEEeCCCCc-----------cccccccCcCCCCCCceEEEEEecChHHHH--------hhCCCCcEEccCCCHHHHHH
Q 000701 255 ILVVLDNLWKC-----------LNLETVGIPYGDDHKGCKILLTSRDRSVLL--------KMGSAPPFLIGVLNEEEAWR 315 (1344)
Q Consensus 255 ~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~ 315 (1344)
-+|++|++... +..+.+...+.....+.+||+++....+.. .-.....+++.+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999753 111222223333345677888876544321 11234578999999999999
Q ss_pred HHHHHhC
Q 000701 316 LFKMTAG 322 (1344)
Q Consensus 316 lf~~~~~ 322 (1344)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888773
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=8.9e-07 Score=101.82 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=94.6
Q ss_pred cceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccCh-hhhccCcccEEeccccc
Q 000701 554 MLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPE-AFGLLTKLRLLDLTDCF 632 (1344)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 632 (1344)
.|.+.++++|.+..+-.++.-+.+|+.|+|++|++.....+..|.+|.+|||+.|.+..+|. +...+. |+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN- 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN- 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-
Confidence 46667777777777767777788888888888888888888888888888898888887774 222333 888888888
Q ss_pred cccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCC
Q 000701 633 QLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDI 695 (1344)
Q Consensus 633 ~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~ 695 (1344)
.++.+.. +.+|++|+.||++.|.+. .-..+.-|..|..|+.|++.||....
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6777754 788888888888887652 22334445556677788888877543
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0011 Score=80.11 Aligned_cols=177 Identities=12% Similarity=0.170 Sum_probs=108.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERK--------------------LFDQVVFS 210 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv 210 (1344)
-..++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..--.. +++ ++++
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~i 93 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEI 93 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEe
Confidence 356899999999999999876654 688999999999999999998764211 111 1122
Q ss_pred EcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEE
Q 000701 211 EVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKI 284 (1344)
Q Consensus 211 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 284 (1344)
.......++ .+..+.+.+. .+++-++|+|+++... ++..+...+....+.+.+
T Consensus 94 dgas~~~vd---------------------dIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 94 DGASNTSVQ---------------------DVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred cCcccCCHH---------------------HHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 111111111 1222222111 2566789999998663 455555444443455656
Q ss_pred EEEec-ChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000701 285 LLTSR-DRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 285 ivTtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
|++|. ...+... ......+++.+++.++....+.+.+...... --++.+..|++.++|.+. |+..+
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55553 3333322 2234568999999999988888776322111 124567789999999774 33333
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0011 Score=80.91 Aligned_cols=182 Identities=14% Similarity=0.182 Sum_probs=108.8
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-------------------CEEEEEE
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLF-------------------DQVVFSE 211 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f-------------------~~~~wv~ 211 (1344)
-+.++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..--.... ..++.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 35689999999999999987665 466899999999999999998875321110 0011111
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ii 285 (1344)
......+++ +..+.+... .+++-++|+|+++... ....+...+......+.+|
T Consensus 95 ~~s~~~v~~---------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI 153 (576)
T PRK14965 95 GASNTGVDD---------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI 153 (576)
T ss_pred ccCccCHHH---------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 111111212 222222221 2556689999998663 3444444443333455555
Q ss_pred -EEecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 000701 286 -LTSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP-IALTTIARAL 355 (1344)
Q Consensus 286 -vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 355 (1344)
+||....+... ......+++.+++.++....+...+......- -++.+..|++.++|.. .|+..+-..+
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45544444432 22345788999999999888877663221111 1345778899999865 5555554443
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.64 E-value=0.00096 Score=73.84 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeE
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKI 255 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 255 (1344)
-+.++|++|+|||++|+.++............-|+.++. .++...+ .|. .. .....+++.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-HHHHHHHHHc---cCc
Confidence 588999999999999999988765433222112443332 1222111 121 11 1122233332 336
Q ss_pred EEEEeCCCCc-----------cccccccCcCCCCCCceEEEEEecChHHHHhh--------CCCCcEEccCCCHHHHHHH
Q 000701 256 LVVLDNLWKC-----------LNLETVGIPYGDDHKGCKILLTSRDRSVLLKM--------GSAPPFLIGVLNEEEAWRL 316 (1344)
Q Consensus 256 LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~l 316 (1344)
+|++|++... +..+.+...+.....+.+||+++......... .....+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999743 11222333333344567788877654322211 1235689999999999999
Q ss_pred HHHHhC
Q 000701 317 FKMTAG 322 (1344)
Q Consensus 317 f~~~~~ 322 (1344)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888773
No 146
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.64 E-value=0.00056 Score=79.37 Aligned_cols=156 Identities=18% Similarity=0.249 Sum_probs=92.0
Q ss_pred CCCCcccccchHHHHHHHHHHHH----c---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 148 SSTGYEAFESRFSTLRDIRNALT----N---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
|.....++.|.+.+++++.+++. . ...+-+.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch
Confidence 33344567889999988888774 1 234578899999999999999999976532 3 1221111
Q ss_pred CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------------cccccCcCC--
Q 000701 215 TPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----------------LETVGIPYG-- 276 (1344)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~-- 276 (1344)
+.... .+ .....+..+++......+.++++|+++.... +-.+...+.
T Consensus 253 ------L~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 ------LIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ------hhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11110 11 0112233444444446778999999764310 001111111
Q ss_pred CCCCceEEEEEecChHHHHh-h----CCCCcEEccCCCHHHHHHHHHHHhCC
Q 000701 277 DDHKGCKILLTSRDRSVLLK-M----GSAPPFLIGVLNEEEAWRLFKMTAGD 323 (1344)
Q Consensus 277 ~~~~~~~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 323 (1344)
....+.+||+||........ + .....+++...+.++..++|+.+...
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 11345678888875543331 1 22357899999999999999988743
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.00056 Score=78.91 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=100.7
Q ss_pred CCCCcccccchHHHHHHHHHHHH----c---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 148 SSTGYEAFESRFSTLRDIRNALT----N---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
|.....++.|-+..++++.+.+. . ..++-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~-- 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG-- 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh--
Confidence 34445567888888888877664 0 235679999999999999999999876422 2 22211
Q ss_pred CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------c----cccccCcCC--
Q 000701 215 TPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL------------N----LETVGIPYG-- 276 (1344)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~-- 276 (1344)
..+... .++ .....+..++.......+.+|++|+++... . +..+...+.
T Consensus 213 ----s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 111 112233445555545678999999987431 0 111111111
Q ss_pred CCCCceEEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 277 DDHKGCKILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 277 ~~~~~~~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
....+..||+||....... .+ .-...+++...+.++..++|+..........+. ....+++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 1234667888887543322 11 223568899999999999998776432211111 1345566666653
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0016 Score=79.15 Aligned_cols=187 Identities=15% Similarity=0.126 Sum_probs=105.0
Q ss_pred cccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 152 YEAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
-+.++|.+...+.|.+++..++. +.+.++|+.|+|||++|+.+++..--...-+. .+...-...+.|.....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGSL 87 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 35789999999999999986654 56778999999999999999876532110000 00000011111111000
Q ss_pred ccc-----ccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEE-EecChHHHHh-h
Q 000701 231 LIL-----HEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILL-TSRDRSVLLK-M 297 (1344)
Q Consensus 231 ~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiv-TtR~~~v~~~-~ 297 (1344)
.+. ......+.+..+.+... .+++-++|+|+++.. .++..+...+........+|+ ||....+... .
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 000 00011122223333322 356778999999866 345555443433333444444 4444433322 2
Q ss_pred CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 298 GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 298 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
+....+++.+++.++....+...+......- -++.+..|++.++|.+.
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMR 215 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 2345788999999999988888774222111 13557788888888765
No 149
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00012 Score=82.50 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=21.2
Q ss_pred cceeEeecccccccccccCCcccccccccEEEEecCCCcccc
Q 000701 1168 YLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSL 1209 (1344)
Q Consensus 1168 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~L~~l 1209 (1344)
+|++|.+++|++++.+|. .+ .++|+.|.+++|.++..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccc
Confidence 466666666666655553 12 245666666666555544
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.61 E-value=0.0019 Score=76.29 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|+.|+|||+|++.+++....+..-..+++++. .++...+...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 46899999999999999999998765422234666653 34444555444321 1222333443 23
Q ss_pred EEEEEeCCCCccc---cc-cccCcCCC-CCCceEEEEEecChH---------HHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCLN---LE-TVGIPYGD-DHKGCKILLTSRDRS---------VLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~~---~~-~l~~~l~~-~~~~~~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
-+|++||++.... +. .+...+.. ...+..+|+|+.... +..++.....+++++.+.++-.+++++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999986422 11 12111111 013445778776421 1123333457899999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHH----HHHHHHh--c--CCHHHHHHHHHHh
Q 000701 321 AGDDVEHRELNSTARNVAMACGGLPIALT----TIARALR--N--RSMREWKNALQQL 370 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~----~~~~~l~--~--~~~~~w~~~l~~l 370 (1344)
+...... -.+++..-|++.+.|..-.+. .+..+-. + .+.+..+.++...
T Consensus 281 ~~~~~~~-l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLE-LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8532211 125677888888888765333 2222221 1 2566667666654
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0011 Score=78.31 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
.-+.|+|++|+|||+|++.+++.......-..++|++. +++...+...+... ......+... .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hcC
Confidence 46999999999999999999998764322235677764 45566665554321 1112333332 345
Q ss_pred EEEEEeCCCCcc---cc-ccccCcCCC-CCCceEEEEEec-ChHH--------HHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCL---NL-ETVGIPYGD-DHKGCKILLTSR-DRSV--------LLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~---~~-~~l~~~l~~-~~~~~~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
-+|++||++... .+ +.+...+.. ...+..||+||. ...- ..++.....+++++.+.++-.+++++.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 589999997542 11 112111111 112346888875 2211 113344567899999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH------hc--CCHHHHHHHHHHh
Q 000701 321 AGDDVEHRELNSTARNVAMACGGLPIALTTIARAL------RN--RSMREWKNALQQL 370 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~--~~~~~w~~~l~~l 370 (1344)
+...... -.++++.-|++.+.|..-.+.-+-.-+ .+ .+....+.++..+
T Consensus 276 ~~~~~~~-l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 276 LEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcCCC-CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8432111 124667888888877643322222111 12 2666667777655
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6.8e-05 Score=55.61 Aligned_cols=38 Identities=34% Similarity=0.516 Sum_probs=17.9
Q ss_pred ccceeecccCCCcccChhhhccCcccEEecccccccccc
Q 000701 599 NLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVI 637 (1344)
Q Consensus 599 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 637 (1344)
+|++|++++|.++.+|..+++|++|+.|++++| .++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 445555555555555544555555555555555 34433
No 153
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.55 E-value=0.0035 Score=75.03 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|+.|+|||+|++.+++.......-..+++++.. ++...+...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 568999999999999999999988754222346676543 3344444443211 1122334443 34
Q ss_pred EEEEEeCCCCccc---c-ccccCcCCC-CCCceEEEEEecChH---------HHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCLN---L-ETVGIPYGD-DHKGCKILLTSRDRS---------VLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~~---~-~~l~~~l~~-~~~~~~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
-+||+||++.... + +.+...+.. ...+..+|+|+.... +..++.....+++++.+.++..+++++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 5899999975421 1 122211111 112345777776432 1224444568999999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCChHH----HHHHHHHHh--c--CCHHHHHHHHHHh
Q 000701 321 AGDDVEHRELNSTARNVAMACGGLPIA----LTTIARALR--N--RSMREWKNALQQL 370 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~Pla----i~~~~~~l~--~--~~~~~w~~~l~~l 370 (1344)
+..... .-.+++..-|++.++|..-. +..+..+.. + .+....+.+++.+
T Consensus 293 ~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 293 AEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 853211 12246688888888887653 333332221 2 2667777777765
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.53 E-value=0.0046 Score=64.39 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCcccccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
+...+.++|-+.+++.|++-.. .....-+.++|..|+|||++++.+.+....+. =.++-|.-.+-.++.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~---- 96 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPE---- 96 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHH----
Confidence 4455678999999888876544 34455788999999999999999999887543 1222222222122222
Q ss_pred HHHHhccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCc---cccccccCcCCC----CCCceEEEEEecChHHHH
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKC---LNLETVGIPYGD----DHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~---~~~~~l~~~l~~----~~~~~~iivTtR~~~v~~ 295 (1344)
+.+.+. ...+|+|.+||+.=. ..+..++..+.. ...+..|..||..++...
T Consensus 97 --------------------l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 97 --------------------LLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------------------HHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 333332 368999999998522 234444433322 233555666665555444
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.52 E-value=0.00025 Score=80.88 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=73.4
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccc
Q 000701 153 EAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLI 232 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (1344)
...++.+..++.+...+.. .+.|.++|++|+|||++|+.+++.......|+.+.|+.+++..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3467788888999888873 4678889999999999999999988766678889999999988877765433110 111
Q ss_pred cccccHHHHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000701 233 LHEETVSRRASRLYERLK--EEKKILVVLDNLWKC 265 (1344)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 265 (1344)
.. -.......+..... .++++++|+|++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 10 00111111222222 257899999998765
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.52 E-value=0.0013 Score=84.80 Aligned_cols=156 Identities=12% Similarity=0.160 Sum_probs=94.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----CE-EEEEEcCCCCCHHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLF----DQ-VVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~~i~ 226 (1344)
.+.++||+++++++++.|......-+.++|++|+|||++|+.++++....... +. ++.+.+ ..+.
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~---- 241 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI---- 241 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh----
Confidence 45699999999999999986666677899999999999999999887533111 12 222222 1111
Q ss_pred HHhccccccccHHHHHHHHHHHHHc-CCeEEEEEeCCCCccc---------cccccCcCCCCCCceEEEEEecChHHHH-
Q 000701 227 EKLGLILHEETVSRRASRLYERLKE-EKKILVVLDNLWKCLN---------LETVGIPYGDDHKGCKILLTSRDRSVLL- 295 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~iivTtR~~~v~~- 295 (1344)
. +.... ...+..+..+++.+.+ +++.+|++|+++.... ...+..+... ....++|-+|..+....
T Consensus 242 a--~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 242 A--GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRKY 317 (852)
T ss_pred h--cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHHH
Confidence 0 10111 1223344555555542 4689999999985521 1112222222 22345666665443311
Q ss_pred ------hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 296 ------KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 296 ------~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
...-...+.+...+.++..++++...
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11234568899999999999988764
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.00072 Score=86.51 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----C-EEEEEEcCCCCCHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLF----D-QVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~i 225 (1344)
..+.++||+.+++++++.|......-+.++|++|+|||++|+.++......... + .++++.++... .
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~------a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV------A-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh------h--
Confidence 345699999999999999987666678899999999999999999887532111 1 23333332210 0
Q ss_pred HHHhccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCccc---------cccccCcCCCCCCceEEEEEecChHHHH
Q 000701 226 AEKLGLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKCLN---------LETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
+... ....++.+..+++.+. .+++.+|++|+++.... -..+..+... ....++|-||..+....
T Consensus 248 ----g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ----GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 321 (857)
T ss_pred ----ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHH
Confidence 0000 0112334444555443 35789999999876521 1122222222 22445666665544311
Q ss_pred -------hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 296 -------KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 296 -------~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
...-...+.+..-+.++..++++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11223456677778899988887655
No 158
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=5.1e-06 Score=102.12 Aligned_cols=198 Identities=25% Similarity=0.325 Sum_probs=101.0
Q ss_pred hccchHhhhhcccc-hhcccccCCCcccCCCceEEEEE-cCCcccccchhHHhhcCCcceEEEE-cCceeeEecCCCccc
Q 000701 1053 IFTNLEEVALSRKD-IMLILQGNFPQHLFGRLQQLEVW-HDDLAAGFPVGLLEVLCSLENLVLS-CNSYEEIFSNEGCLE 1129 (1344)
Q Consensus 1053 ~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~~~~l~~l~~L~~L~l~-c~~l~~~~~~~~~~~ 1129 (1344)
.+++|++|+++.+. +++..-..+.. .+++|+.|.+. |..+++..-..+...+++|++|+++ |..+++ .++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~-~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d----~~l~~ 315 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALAS-RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD----SGLEA 315 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHh-hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH----HHHHH
Confidence 45666677776666 44332111111 25788998877 7778877777777889999999999 877632 11110
Q ss_pred cccccccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccccccccccCCcccccccccEEEEecCCCcccc
Q 000701 1130 KHVDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSL 1209 (1344)
Q Consensus 1130 ~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~L~~l 1209 (1344)
. ...+++|+.+.+..+.. +..++.+.+.+|..... ..+..+.+..|++++++
T Consensus 316 --~-~~~c~~l~~l~~~~~~~---------------c~~l~~~~l~~~~~~~~----------d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 316 --L-LKNCPNLRELKLLSLNG---------------CPSLTDLSLSGLLTLTS----------DDLAELILRSCPKLTDL 367 (482)
T ss_pred --H-HHhCcchhhhhhhhcCC---------------CccHHHHHHHHhhccCc----------hhHhHHHHhcCCCcchh
Confidence 0 11133333333310000 22233333322222110 14445555555555554
Q ss_pred cchhhHhhhcccc-eEEEcccccce-EEeeccCCCCchhhhhcCcceEEeCccceeeeccCCCccccccCCCceeeeCCC
Q 000701 1210 VTCSVAKSLERLV-MLSISGCSAMR-QVIIGCGQGDSDIAAANLKEEIVFSKLRYIGLLDLENLTSFCSGAANYTIKFPS 1287 (1344)
Q Consensus 1210 ~~~~~~~~L~~L~-~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~s 1287 (1344)
...... ..... .+.+.+|+.++ .+.. ... ...+|+.|.+..|...+...... ....+..
T Consensus 368 ~l~~~~--~~~~~~~~~l~gc~~l~~~l~~-~~~--------------~~~~l~~L~l~~~~~~t~~~l~~--~~~~~~~ 428 (482)
T KOG1947|consen 368 SLSYCG--ISDLGLELSLRGCPNLTESLEL-RLC--------------RSDSLRVLNLSDCRLVTDKGLRC--LADSCSN 428 (482)
T ss_pred hhhhhh--ccCcchHHHhcCCcccchHHHH-Hhc--------------cCCccceEecccCccccccchHH--Hhhhhhc
Confidence 222111 11122 45666776662 1110 000 13337888888888776655443 1112677
Q ss_pred CCceeecCCCCCccc
Q 000701 1288 LEDLSVTGCRNMKIF 1302 (1344)
Q Consensus 1288 L~~L~i~~C~~l~~l 1302 (1344)
++.+++.+|+.+..-
T Consensus 429 ~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 429 LKDLDLSGCRVITLK 443 (482)
T ss_pred cccCCccCcccccch
Confidence 788888888777653
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00035 Score=86.96 Aligned_cols=157 Identities=13% Similarity=0.166 Sum_probs=94.5
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcC-C---CCEEEEEEcCCCCCHHHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERK-L---FDQVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
.+.++||+.+++++++.|......-+.++|++|+|||++|+.+++...... . .+..+|.. +...+ ..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 356899999999999998865555667999999999999999998754321 1 13344421 11111 10
Q ss_pred HhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------ccccccCcCCCCCCceEEEEEecChHHHH--
Q 000701 228 KLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL----------NLETVGIPYGDDHKGCKILLTSRDRSVLL-- 295 (1344)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~~~~iivTtR~~~v~~-- 295 (1344)
+... ....+.....+.+.+.+.++.+|++|+++... +...+..++.. ....++|-+|.......
T Consensus 256 --G~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHh
Confidence 1111 11223444556666654567899999997541 11111222222 23455666665443211
Q ss_pred -----hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 296 -----KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 296 -----~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
..+-...+.++..+.+++.++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233579999999999999998765
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0015 Score=73.47 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEEcC---CCCCHHHHHHHHHHHhcc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSEVS---QTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~~ 231 (1344)
.+.+.++|+.|+|||++|+.+++..--+. ..+...|+... +...++++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i---------- 91 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV---------- 91 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH----------
Confidence 45688999999999999999998764211 01122333221 11222222
Q ss_pred ccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecCh-HHHHh-hCCCCcE
Q 000701 232 ILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRDR-SVLLK-MGSAPPF 303 (1344)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~~-~v~~~-~~~~~~~ 303 (1344)
..+.+.+. .+++-++|+|+++.. .+...+...+..-..++.+|++|.+. .+... .+-...+
T Consensus 92 -----------R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 92 -----------RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred -----------HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 22222222 245566678999876 34444444443333566666666654 33322 2334578
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 304 LIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 304 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
.+.+++.+++.+.+....+.. .++.+..++..++|.|.....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999998764211 1233567789999999755443
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.00093 Score=79.62 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|..|+|||.|++.+++.......-..+++++. +++..++...+... ....+.+++. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 35899999999999999999998764322234666654 44444444433210 1122333332 33
Q ss_pred EEEEEeCCCCcc---cccc-ccCcCCCC-CCceEEEEEecCh---------HHHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCL---NLET-VGIPYGDD-HKGCKILLTSRDR---------SVLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~---~~~~-l~~~l~~~-~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
=+|||||+.... .|+. +...+... ..+..||||++.. .+..++...-.+++.+.+.+.-.+++++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 578899997652 2221 22212111 2345688888752 23335566678999999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 321 AGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
+....- .--++++.-|++.+.+..
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCH
Confidence 853221 112456677777776654
No 162
>CHL00176 ftsH cell division protein; Validated
Probab=97.49 E-value=0.0021 Score=78.75 Aligned_cols=170 Identities=17% Similarity=0.233 Sum_probs=97.0
Q ss_pred ccccchHHHHHHHHHH---HHc---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 153 EAFESRFSTLRDIRNA---LTN---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~---l~~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
+++.|.++.++++.+. +.. ...+-|.++|++|+|||++|+.++...... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccH----HH
Confidence 4567776665555444 332 123568999999999999999999876422 233321 11
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------c----cccccCcCC--CCCCce
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL------------N----LETVGIPYG--DDHKGC 282 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~~~ 282 (1344)
+.... .+ .....+..+++......+++|++||++... . +..+...+. ....+.
T Consensus 252 f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 01 011233445555555788999999997541 1 111111111 123456
Q ss_pred EEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000701 283 KILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 283 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
.||.||....... .+ .-...+.+...+.++-.++++.++......+ ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 6777776543322 11 2235788999999999999999885422111 23456788888773
No 163
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.47 E-value=2.9e-05 Score=82.67 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=7.4
Q ss_pred hhccCcccEEecccc
Q 000701 617 FGLLTKLRLLDLTDC 631 (1344)
Q Consensus 617 i~~L~~L~~L~l~~~ 631 (1344)
+..++.|++|.|.+|
T Consensus 116 l~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNC 130 (382)
T ss_pred HHhccCHHHHhhhcC
Confidence 344455555555554
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0065 Score=62.86 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=105.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc-CCCCCHHHHHHHHHHHhccccccccHH----HHHHHH
Q 000701 171 NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV-SQTPNIKDIQKEIAEKLGLILHEETVS----RRASRL 245 (1344)
Q Consensus 171 ~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l 245 (1344)
.++.++++++|.-|.|||++++.....+.. +.++-+.+ .+..+...+...|+..+..+.. .... .....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHH
Confidence 456789999999999999999954444432 22222333 3456778888888888876221 1111 122233
Q ss_pred HHHHHcCCe-EEEEEeCCCCc--cccccccCc--C-CCCCCceEEEEEecChH-------HHHhh--CCCCcEEccCCCH
Q 000701 246 YERLKEEKK-ILVVLDNLWKC--LNLETVGIP--Y-GDDHKGCKILLTSRDRS-------VLLKM--GSAPPFLIGVLNE 310 (1344)
Q Consensus 246 ~~~l~~~~~-~LlvlDdv~~~--~~~~~l~~~--l-~~~~~~~~iivTtR~~~-------v~~~~--~~~~~~~l~~L~~ 310 (1344)
.....+++| ..+++||.... +..+.+... + ......-+|+..-..+- +.... +....|++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 444446777 99999998765 233322111 1 11111123443332111 11111 1222389999999
Q ss_pred HHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCChHHHHHHHH
Q 000701 311 EEAWRLFKMTAGDDV--EHRELNSTARNVAMACGGLPIALTTIAR 353 (1344)
Q Consensus 311 ~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~ 353 (1344)
++...+++.+.+... .+--.++....|.++..|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999998884332 2223346678899999999999988774
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0024 Score=75.13 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.|+|+.|+|||+|++.+++..... ...+++++. +.+...+...+... ....+.+.. ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 468899999999999999999987643 234556553 34444554444311 111222222 344
Q ss_pred EEEEEeCCCCcccc----ccccCcCCC-CCCceEEEEEecCh---------HHHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 255 ILVVLDNLWKCLNL----ETVGIPYGD-DHKGCKILLTSRDR---------SVLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 255 ~LlvlDdv~~~~~~----~~l~~~l~~-~~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
-+|++||+...... +++...+.. ...|..||+||... .+..++.....+.+.+++.++..+++++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 58889998765321 112211111 01345688888542 22224445578899999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCC
Q 000701 321 AGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
+..... .-.+++..-|++...|.
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCC
Confidence 843211 11245566666666654
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.44 E-value=0.0034 Score=76.02 Aligned_cols=201 Identities=18% Similarity=0.231 Sum_probs=109.2
Q ss_pred CCCcccccchHHHHHHHHHHHH---c---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC
Q 000701 149 STGYEAFESRFSTLRDIRNALT---N---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP 216 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~---~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 216 (1344)
...-++++|-++.++++.+++. . ...+-+.++|++|+|||++|+.++...... ++.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH--
Confidence 3344567887776665555443 1 223468999999999999999999875422 222221
Q ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc------------cc----cccCcCC--CC
Q 000701 217 NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN------------LE----TVGIPYG--DD 278 (1344)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~~----~l~~~l~--~~ 278 (1344)
.++.... .+ .....+..+++......+.+|++||++.... +. .+...+. ..
T Consensus 122 --~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111111 11 0122334455554446778999999965410 00 1111111 12
Q ss_pred CCceEEEEEecChHHH-Hh----hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC-hHHHHHHH
Q 000701 279 HKGCKILLTSRDRSVL-LK----MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL-PIALTTIA 352 (1344)
Q Consensus 279 ~~~~~iivTtR~~~v~-~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 352 (1344)
..+..||.||...... .. ..-...+++...+.++-.++|+.+........+ .....+++.+.|. +-.|..+.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHH
Confidence 3355667677654321 11 123357889999999999999988753322111 1245788888774 43333332
Q ss_pred H---HH--h-c---CCHHHHHHHHHHhc
Q 000701 353 R---AL--R-N---RSMREWKNALQQLR 371 (1344)
Q Consensus 353 ~---~l--~-~---~~~~~w~~~l~~l~ 371 (1344)
. .. + + .+...++.+++...
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 2 11 1 2 25666666666543
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0059 Score=71.66 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=91.0
Q ss_pred cccccchHHHHHHHHHHHH------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALT------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
.++-+|.++.++++++++. +.+.+++..+||+|||||++|+.++.....+ | +-++++.-.|..++----
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 3456899999999999986 3456899999999999999999999988633 3 345666666655542211
Q ss_pred HHHhccccccccHHHHHHHHHHHHH--cCCeEEEEEeCCCCcc---------cc-c--------cccCcCCC-CCCceEE
Q 000701 226 AEKLGLILHEETVSRRASRLYERLK--EEKKILVVLDNLWKCL---------NL-E--------TVGIPYGD-DHKGCKI 284 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~---------~~-~--------~l~~~l~~-~~~~~~i 284 (1344)
-..+| ..+. .+.+.++ +..+-|+++|+|+..- ++ + .+...+.+ .-.=|+|
T Consensus 485 RTYVG-----AMPG----kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 RTYVG-----AMPG----KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeec-----cCCh----HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 11111 1111 2334443 3567789999987541 00 0 00001100 1122444
Q ss_pred EE-EecCh--HHHH-hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 285 LL-TSRDR--SVLL-KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 285 iv-TtR~~--~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
++ .|-+. .+.. ...-...|++.+...+|-.++-+++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 43 33221 1111 22334578899999888887776665
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.42 E-value=0.0015 Score=68.86 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=42.9
Q ss_pred CcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE
Q 000701 151 GYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVF 209 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w 209 (1344)
+...+.+|......+..++.+ ..+|.+.|++|+|||+||..++.+.-....|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 345567888888888888875 359999999999999999999986432234554443
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.0004 Score=67.65 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=43.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC-eE
Q 000701 177 IGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK-KI 255 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~ 255 (1344)
|.|+|++|+|||++|+.+++..... ++.++.+...+. ........+..+++...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999988522 345554331100 11122333334444443344 89
Q ss_pred EEEEeCCCCc
Q 000701 256 LVVLDNLWKC 265 (1344)
Q Consensus 256 LlvlDdv~~~ 265 (1344)
++++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999765
No 170
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=1e-05 Score=99.38 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=15.4
Q ss_pred CCceEEEEE-cCCcccccchhHHhhcCCcceEEEE
Q 000701 1081 GRLQQLEVW-HDDLAAGFPVGLLEVLCSLENLVLS 1114 (1344)
Q Consensus 1081 ~~L~~L~l~-~~~l~~~~~~~~l~~l~~L~~L~l~ 1114 (1344)
++|++|+++ |..+++..-.....+++.|+.|.+.
T Consensus 295 ~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 295 PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred CcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 345555555 4444433333333445555554443
No 171
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.33 E-value=0.0094 Score=67.21 Aligned_cols=193 Identities=17% Similarity=0.225 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCCEEEEEEcCCC---CCHHHHHHHHHHHhcccc
Q 000701 158 RFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLV-KAVARQAKERKLFDQVVFSEVSQT---PNIKDIQKEIAEKLGLIL 233 (1344)
Q Consensus 158 R~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 233 (1344)
|.+.+++|..||....-..|.|.||-|+||+.|+ .++..+. +.+..+.+.+. .+-..+++.++.++|..+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 7666543 22677777543 334556666666665321
Q ss_pred c-------------------------cccHHHHHHHHHHHH----H-------------------------cCCeEEEEE
Q 000701 234 H-------------------------EETVSRRASRLYERL----K-------------------------EEKKILVVL 259 (1344)
Q Consensus 234 ~-------------------------~~~~~~~~~~l~~~l----~-------------------------~~~~~Llvl 259 (1344)
- .++.+..+..+++.. + ...+-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 012222222222110 0 023779999
Q ss_pred eCCCCcc-----------ccccccCcCCCCCCceEEEEEecChHHHH----hh--CCCCcEEccCCCHHHHHHHHHHHhC
Q 000701 260 DNLWKCL-----------NLETVGIPYGDDHKGCKILLTSRDRSVLL----KM--GSAPPFLIGVLNEEEAWRLFKMTAG 322 (1344)
Q Consensus 260 Ddv~~~~-----------~~~~l~~~l~~~~~~~~iivTtR~~~v~~----~~--~~~~~~~l~~L~~~e~~~lf~~~~~ 322 (1344)
|+..... +|... + -..+-.+||+.|-+..... .+ ...+.+.|...+.+.|..+...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---L-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---H-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985431 34421 1 1234567888887654444 33 3456789999999999999999885
Q ss_pred CCCCC-------------------cchHHHHHHHHHHhCCChHHHHHHHHHHh-cCCH
Q 000701 323 DDVEH-------------------RELNSTARNVAMACGGLPIALTTIARALR-NRSM 360 (1344)
Q Consensus 323 ~~~~~-------------------~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~ 360 (1344)
..... .....-....++.+||--.-+..+++.++ +.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 32100 11223356778888998888888888888 4444
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.0006 Score=67.59 Aligned_cols=91 Identities=21% Similarity=0.149 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
.+.+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+.....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999998876432 24566655543332222111 1111111112223333444555554334
Q ss_pred eEEEEEeCCCCccc
Q 000701 254 KILVVLDNLWKCLN 267 (1344)
Q Consensus 254 ~~LlvlDdv~~~~~ 267 (1344)
..++++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 59999999987743
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=2.7e-05 Score=90.03 Aligned_cols=155 Identities=23% Similarity=0.214 Sum_probs=109.9
Q ss_pred cHHHHhcCCcceEEEeCCCCCCcCCcccccCC---------------------------------CCcEEEcCCCCCCCc
Q 000701 545 SKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLV---------------------------------NLQTLSLDQSMLGDI 591 (1344)
Q Consensus 545 ~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~---------------------------------~Lr~L~L~~~~i~~l 591 (1344)
|-++| .++.||+|.|.++.+... ..+..++ .|.+-+.++|.+..+
T Consensus 102 pi~if-pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred Cceec-cccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 44554 688999999999887542 1111111 133333444445555
Q ss_pred -cccccccccceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceecccccccc
Q 000701 592 -AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERS 670 (1344)
Q Consensus 592 -~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 670 (1344)
+++.-+..|++|||++|+++... .+..|++|+|||++.| .++.+|.-....++ |+.|.+++|.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l------------ 244 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL------------ 244 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH------------
Confidence 66777889999999999888776 7899999999999998 88888874333444 99999988855
Q ss_pred ccchhhhcCCCCCcEEEEEeCCCCCCCCc---cccccCceeEEEecCCCC
Q 000701 671 CAGLDELMHLPRLTSLEIDIGNDDILPEG---FFSRRLENFKISVGDAES 717 (1344)
Q Consensus 671 ~~~l~~L~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 717 (1344)
..+.++.+|.+|+.||++.|-+...... ..+..|..|.+.+|..|.
T Consensus 245 -~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 245 -TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3456688889999999998866544432 256778888888777654
No 174
>PRK06620 hypothetical protein; Validated
Probab=97.32 E-value=0.0023 Score=67.41 Aligned_cols=131 Identities=17% Similarity=0.029 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. . +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~--------------------~-------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN--------------------E-------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc--------------------h-------hHH--hcC
Confidence 67999999999999999987664421 1211 00000 0 011 123
Q ss_pred EEEEEeCCCCccc--cccccCcCCCCCCceEEEEEecChH-------HHHhhCCCCcEEccCCCHHHHHHHHHHHhCCCC
Q 000701 255 ILVVLDNLWKCLN--LETVGIPYGDDHKGCKILLTSRDRS-------VLLKMGSAPPFLIGVLNEEEAWRLFKMTAGDDV 325 (1344)
Q Consensus 255 ~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 325 (1344)
-++++||++...+ +-.+...+. ..|..+|+|++... ...++...-++++++++.++-..++++.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4688899974322 111111111 34567889887432 223455566899999999998888888774221
Q ss_pred CCcchHHHHHHHHHHhCCChH
Q 000701 326 EHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 326 ~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
- .-.+++..-|++.+.|---
T Consensus 165 l-~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 165 V-TISRQIIDFLLVNLPREYS 184 (214)
T ss_pred C-CCCHHHHHHHHHHccCCHH
Confidence 1 1124566777777766543
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.00092 Score=80.97 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCCcccccchHHHHHHHHHHHHc-----CCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 149 STGYEAFESRFSTLRDIRNALTN-----ANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~-----~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
|...+.++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44456789999999999999873 2345799999999999999999997654
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0022 Score=74.55 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhcccccc
Q 000701 157 SRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHE 235 (1344)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 235 (1344)
.|..-..++.+.+..... ++.|.|+-++||||+++.+....... .+++...+.. +..++ .+...
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~-------- 85 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR-------- 85 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH--------
Confidence 344455566666543333 99999999999999997776655432 4555443322 11111 11111
Q ss_pred ccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHH------hhCCCCcEEccCCC
Q 000701 236 ETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLL------KMGSAPPFLIGVLN 309 (1344)
Q Consensus 236 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~------~~~~~~~~~l~~L~ 309 (1344)
.+.+ +...++..++||.|....+|+.....+.+..+. +|++|+-+..... ..+-...+++.||+
T Consensus 86 --------~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 86 --------AYIE-LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred --------HHHH-hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1111 111367899999999999999877777666666 8888887654443 12335678999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000701 310 EEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTT 350 (1344)
Q Consensus 310 ~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 350 (1344)
-.|...+-. ........+. .-.-.-..||.|-++..
T Consensus 156 F~Efl~~~~----~~~~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 156 FREFLKLKG----EEIEPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHHHhhcc----cccchhHHHH-HHHHHHHhCCCcHHHhC
Confidence 888876533 0000001111 22223346888877655
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00019 Score=88.49 Aligned_cols=87 Identities=26% Similarity=0.336 Sum_probs=38.0
Q ss_pred ccHHHHhcCCcceEEEeCCCCCC--cCCcccccCCCCcEEEcCCCCCCCccccccccccceeecccCCCcccC--hhhhc
Q 000701 544 ISKSFFKEMRMLRVVGFSKMQLS--SLPSSMDLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLP--EAFGL 619 (1344)
Q Consensus 544 l~~~~f~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~ 619 (1344)
+|..+..-++.||.|.+++-.+. ++-.-..++++|+.||+++++++.+..+++|+|||+|.+++-.+..-. ..+-+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 34444344444555544443331 122223344445555555555554445555555555544443332211 23344
Q ss_pred cCcccEEeccc
Q 000701 620 LTKLRLLDLTD 630 (1344)
Q Consensus 620 L~~L~~L~l~~ 630 (1344)
|++|++||+|.
T Consensus 219 L~~L~vLDIS~ 229 (699)
T KOG3665|consen 219 LKKLRVLDISR 229 (699)
T ss_pred ccCCCeeeccc
Confidence 44444444444
No 178
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0025 Score=65.16 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=104.0
Q ss_pred cccccchHHHHH---HHHHHHHcC------CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHH
Q 000701 152 YEAFESRFSTLR---DIRNALTNA------NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 152 ~~~~~gR~~~~~---~l~~~l~~~------~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (1344)
.++++|.++.++ -|++.|.++ .++-|..+|++|.|||.+|+.+++...+- ++.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vka-------t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKA-------T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEech-------H
Confidence 456789887654 366777632 36789999999999999999999877643 222211 1
Q ss_pred HHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---cc-----------ccccCcCCC--CCCceEEEE
Q 000701 223 KEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---NL-----------ETVGIPYGD--DHKGCKILL 286 (1344)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~-----------~~l~~~l~~--~~~~~~iiv 286 (1344)
+-|-+.+| +....+..++++..+.-++++.+|.++... .+ .++...+.. .+.|...|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 12222222 234556777887777889999999987551 11 111112211 245666666
Q ss_pred EecChHHHH-hh--CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 287 TSRDRSVLL-KM--GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 287 TtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
+|.+..... .+ .-...++..--+++|-.+++...+..-.-+.+ .-.+.++++.+|+-
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 666554433 11 22346777778889999999888842221111 11456777777653
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0021 Score=75.75 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHHH------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
.+-+|-++.+++|++.|. .-+.+++.++||+|+|||+|++.++.....+ | +-++++...|..++.----
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 346799999999999986 2345799999999999999999999988633 4 3456666666555422111
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc-c---------cc--------cccCcC---CCCCCceEEE
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL-N---------LE--------TVGIPY---GDDHKGCKIL 285 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-~---------~~--------~l~~~l---~~~~~~~~ii 285 (1344)
..+| .-+...++.+.+ . +.++-+++||+++... + ++ .+...+ +-.-.....|
T Consensus 398 TYIG-----amPGrIiQ~mkk-a-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 TYIG-----AMPGKIIQGMKK-A-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccc-----cCChHHHHHHHH-h-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 1222 111222222221 2 3678899999987441 0 01 010001 1111222233
Q ss_pred EEecChH-HH-HhhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 286 LTSRDRS-VL-LKMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 286 vTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.|..+-. +. +.+.-..++++.+.+++|=.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3333222 22 233455689999999999888877775
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00017 Score=88.81 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=81.3
Q ss_pred CCCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCC---ccccccccc
Q 000701 523 LEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGD---IAIIGKLKN 599 (1344)
Q Consensus 523 ~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~---l~~i~~L~~ 599 (1344)
.-+|.||+|.+.+-.. ..+-....+.++++|+.||+|+++++.+ ..+++|++|++|.+++=.++. +..+.+|++
T Consensus 145 ~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 3689999999977543 1121345568999999999999999999 779999999999998876654 478999999
Q ss_pred cceeecccCCCcccCh-------hhhccCcccEEecccc
Q 000701 600 LEILSMINSDIVKLPE-------AFGLLTKLRLLDLTDC 631 (1344)
Q Consensus 600 L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~ 631 (1344)
|++||+|.......+. .-..|++||.||.+++
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9999999874433332 1124788888888875
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0071 Score=68.62 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=105.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
....+.|+|+.|.|||.|++.+.+.......-..+++++ .+.+....+..+.. ..+....+. -
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~---y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEK---Y 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHh---h
Confidence 367899999999999999999999887553323444433 34444444443321 111122222 1
Q ss_pred CeEEEEEeCCCCccc---ccc-ccCcCCC-CCCceEEEEEecC---------hHHHHhhCCCCcEEccCCCHHHHHHHHH
Q 000701 253 KKILVVLDNLWKCLN---LET-VGIPYGD-DHKGCKILLTSRD---------RSVLLKMGSAPPFLIGVLNEEEAWRLFK 318 (1344)
Q Consensus 253 ~~~LlvlDdv~~~~~---~~~-l~~~l~~-~~~~~~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 318 (1344)
.-=++++||++-... |++ +...|.. ...|-+||+|++. +.+..++...-.+++++.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 223888999976532 222 2222211 1223378998863 2334456677889999999999999999
Q ss_pred HHhCCC---CCCcchHHHHHHHHHHhCCChHHHHHHHHHHh--c--CCHHHHHHHHHHhcCCC
Q 000701 319 MTAGDD---VEHRELNSTARNVAMACGGLPIALTTIARALR--N--RSMREWKNALQQLRAPS 374 (1344)
Q Consensus 319 ~~~~~~---~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~--~--~~~~~w~~~l~~l~~~~ 374 (1344)
+.+... .++.-..-++.++.+-..-+.-|+..+..+-. + .+.+.-+.++..+....
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAG 317 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccc
Confidence 977422 22222333344443333334445544444433 2 25666666666655443
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.026 Score=62.83 Aligned_cols=160 Identities=12% Similarity=0.142 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCCEEEEEEcC---CCCC
Q 000701 161 TLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER-------------------KLFDQVVFSEVS---QTPN 217 (1344)
Q Consensus 161 ~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~---~~~~ 217 (1344)
..+.+.+.+..++. +.+.++|+.|+||+++|+.+++..--. .|-| ..|+... +...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCC
Confidence 35566677765554 578999999999999999998765311 1112 2233221 1122
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecC-
Q 000701 218 IKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRD- 290 (1344)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~- 290 (1344)
++++ ..+.+.+. .+++-++|+|+++.. .....+...+-.-.+++.+|++|.+
T Consensus 90 vdqi---------------------R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 90 VEQI---------------------RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred HHHH---------------------HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 2222 22222221 356778999999876 3444444444444455665555554
Q ss_pred hHHHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 291 RSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 291 ~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
..+... .+-...+.+.+++.+++.+.+.....+ .+..+++.++|.|+....+
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 444432 233467899999999999888764211 1346788999999876544
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.19 E-value=0.0034 Score=80.12 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=83.5
Q ss_pred ccccchHHHHHHHHHHHH------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
..++|.++.++++.+++. ..+.+++.++|++|+|||++|+.+++..... |- -+.++...+..++....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~---~i~~~~~~~~~~i~g~~- 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FV---RFSLGGVRDEAEIRGHR- 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eE---EEeCCCcccHHHHcCCC-
Confidence 347898998999888764 1244689999999999999999999987522 32 22333333333221110
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc------cccccC--------cCCCC-------CCceEEE
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN------LETVGI--------PYGDD-------HKGCKIL 285 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~--------~l~~~-------~~~~~ii 285 (1344)
..+......... ....... ..+-++++|+++.... ...+.. .|.+. ..+..+|
T Consensus 394 ----~~~~g~~~g~i~-~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 394 ----RTYVGAMPGRII-QGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CceeCCCCchHH-HHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 001111111111 1222221 3344889999876521 011111 11111 1234455
Q ss_pred EEecChH-HHH-hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 286 LTSRDRS-VLL-KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 286 vTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.||.... +.. ...-...+++.+++.++-.++++...
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554332 111 11223578899999988888876654
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.16 E-value=0.0046 Score=73.14 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=93.2
Q ss_pred ccccchHHHHHHHHHHHH-------c---CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT-------N---ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (1344)
.++.|.+..++.+.+... . ..++-|.++|++|+|||.+|+.+++..... | +-+..+ .+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------Hhc
Confidence 446676665555544221 0 234678999999999999999999987532 2 122221 111
Q ss_pred HHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----c----------ccccCcCCCCCCceEEEEEe
Q 000701 223 KEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----L----------ETVGIPYGDDHKGCKILLTS 288 (1344)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~----------~~l~~~l~~~~~~~~iivTt 288 (1344)
. ...+. .+..+..+++......+++|++|+++..-. . ..+...+.....+..||.||
T Consensus 297 ~--------~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 G--------GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred c--------cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1 01111 122334444444456889999999975311 0 00111111223345566677
Q ss_pred cChHH-HHh----hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 289 RDRSV-LLK----MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 289 R~~~v-~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
..... ... ..-...+.++.-+.++-.++|+.+..........+.....+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 64432 111 1234578888899999999999887532211100112455666666653
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0075 Score=68.49 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=87.2
Q ss_pred cccc-hHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEEEEE
Q 000701 154 AFES-RFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERK--------------------LFDQVVFSE 211 (1344)
Q Consensus 154 ~~~g-R~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 211 (1344)
.++| .+...+.+...+..++. +...++|+.|+|||++|+.+++..--.. |.|..+...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3456 66777888888876665 4669999999999999999988753211 112211111
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEE
Q 000701 212 VSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ii 285 (1344)
.+....+ +.+..+.+.+. .+++-++|+|+++... +...+...+.....++.+|
T Consensus 86 ~~~~i~i---------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 86 DGQSIKK---------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccCCH---------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 1111111 22222333322 2566789999987663 3334444444444566666
Q ss_pred EEecCh-HHHH-hhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 286 LTSRDR-SVLL-KMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 286 vTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
++|.+. .+.. ..+-...+++.+++.++..+.+.+.
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 666543 3332 2233467999999999998888654
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.12 E-value=0.013 Score=69.16 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=127.0
Q ss_pred cccccchHHHHHHHHHHHH----c-CCCeEEEEEcCCCCcHHHHHHHHHHHHh---hc---CCCCEEEEEEcCCCCCHHH
Q 000701 152 YEAFESRFSTLRDIRNALT----N-ANAGIIGVYGMGGIGKTTLVKAVARQAK---ER---KLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~-~~~~~i~I~G~~G~GKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~~~ 220 (1344)
+..+-+|+.|..+|-.++. . +....+.|.|.+|+|||..+..|...+. .+ ..|+ .+.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3456789999999988876 2 3445899999999999999999998654 22 2343 23455555667999
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCccc--cccccCcCCC-CCCceEEEEEecCh--
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCLN--LETVGIPYGD-DHKGCKILLTSRDR-- 291 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~l~~-~~~~~~iivTtR~~-- 291 (1344)
++..|..++.... ......++.+..++. ..+.+++++|+++..-. -+-+...|.| ..+++|++|-+=..
T Consensus 474 ~Y~~I~~~lsg~~--~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 474 IYEKIWEALSGER--VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHHhcccCc--ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999886533 222333444444444 35678999999875522 1112222322 35677766644311
Q ss_pred HHHH---------hhCCCCcEEccCCCHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000701 292 SVLL---------KMGSAPPFLIGVLNEEEAWRLFKMTAGDD--VEHRELNSTARNVAMACGGLPIALTTIARAL 355 (1344)
Q Consensus 292 ~v~~---------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 355 (1344)
.... ++ ....+.+.|.+.++-.++...+..+. ..+...+-++++|+.-.|..-.|+.+.-++.
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1111 11 23568889999999999998887432 3344455566677766666666665555444
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.013 Score=67.55 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=104.6
Q ss_pred cccccchHHHHHHHHHHHH---c---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHH
Q 000701 152 YEAFESRFSTLRDIRNALT---N---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIK 219 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~---~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (1344)
-.++=|-+..+.+|.+++. . ..++-|.++|++|.|||.||+.++....+- ++.++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecc-----
Confidence 3456678888887777764 1 245678999999999999999999988754 333332
Q ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---cc----------ccccCc---CCCC---CC
Q 000701 220 DIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---NL----------ETVGIP---YGDD---HK 280 (1344)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~----------~~l~~~---l~~~---~~ 280 (1344)
-+|...+.. ..++.+..+++...+.-++++++|+++... +| .++... +... +.
T Consensus 257 ---peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 257 ---PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ---hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 122222221 224456667777777889999999998651 11 111111 1111 12
Q ss_pred ceEEEE-EecChHHHHhh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh----HHHHHH
Q 000701 281 GCKILL-TSRDRSVLLKM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP----IALTTI 351 (1344)
Q Consensus 281 ~~~iiv-TtR~~~v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~ 351 (1344)
+.-||= |+|...+.... .-.+.|.+.--++..-.++++..+.+-..+.++ -..+|++.+-|.- .|+...
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGfVGADL~AL~~~ 406 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGFVGADLMALCRE 406 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCccchhHHHHHHH
Confidence 222332 44544333322 233567788778877777877766321111111 1456777777664 344444
Q ss_pred HHHHh
Q 000701 352 ARALR 356 (1344)
Q Consensus 352 ~~~l~ 356 (1344)
|+..+
T Consensus 407 Aa~vA 411 (802)
T KOG0733|consen 407 AAFVA 411 (802)
T ss_pred HHHHH
Confidence 44443
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0094 Score=66.40 Aligned_cols=173 Identities=15% Similarity=0.122 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcCC----------------CCEEEEEEcCCCCCHHHHH
Q 000701 160 STLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERKL----------------FDQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 160 ~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~~----------------f~~~~wv~~~~~~~~~~~~ 222 (1344)
...+.+...+..++.+ .+.++|+.|+||+++|..+++..--+.. .+-..|+.......-.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~--- 87 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD--- 87 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc---
Confidence 3456677777766654 6899999999999999999876532110 1112233110000000
Q ss_pred HHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecC-hHHHH
Q 000701 223 KEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRD-RSVLL 295 (1344)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~-~~v~~ 295 (1344)
.....-..+.+..+.+.+. .+++-++|+|+++... +-..+...+-.-.+++.+|++|.+ ..+..
T Consensus 88 ---------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 88 ---------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ---------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 0000001222333333332 3567899999998763 223333333333346656666654 33333
Q ss_pred h-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 296 K-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 296 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
. .+-...+.+.+++.+++.+.+... + .+ +..+..++..++|.|+....+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 2 223457889999999998888754 2 11 122667899999999865443
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0095 Score=67.28 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
...+.+.|++|+|||+||.+++..- .|+.+=-++..+.....+ ...-..+..+++-..+.+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhhcCc
Confidence 4567899999999999999998754 376554433222111111 111122233333333466
Q ss_pred eEEEEEeCCCCccccccccCcCCC---------------CCCceEEEEEecChHHHHhhCC----CCcEEccCCCH-HHH
Q 000701 254 KILVVLDNLWKCLNLETVGIPYGD---------------DHKGCKILLTSRDRSVLLKMGS----APPFLIGVLNE-EEA 313 (1344)
Q Consensus 254 ~~LlvlDdv~~~~~~~~l~~~l~~---------------~~~~~~iivTtR~~~v~~~~~~----~~~~~l~~L~~-~e~ 313 (1344)
--.+|+||++..-+|-.++..|.. .++.--|+-||..+.+...|+- ...|.+..++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 678999999998888776654422 2233345567777778776543 25688888887 777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHh
Q 000701 314 WRLFKMTAGDDVEHRELNSTARNVAMAC 341 (1344)
Q Consensus 314 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 341 (1344)
.+.+...- ...+.+.+.++.+...++
T Consensus 679 ~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 679 LEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 77776653 112223344455555554
No 190
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.005 Score=68.80 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=68.9
Q ss_pred HHHHHHHHc-CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EEEEEcCCC-CCHHHHHHHHHHHhccccccccHH
Q 000701 163 RDIRNALTN-ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQ-VVFSEVSQT-PNIKDIQKEIAEKLGLILHEETVS 239 (1344)
Q Consensus 163 ~~l~~~l~~-~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 239 (1344)
.++++.+.. ++...+.|+|++|+|||||++.+++..... +-+. ++|+.+.+. .++.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 446676653 455678999999999999999999877643 2233 467777654 568899999988776544322222
Q ss_pred H------HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 240 R------RASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 ~------~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
. .+..+.+++. ++++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 2223334443 589999999998643
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.002 Score=78.33 Aligned_cols=155 Identities=12% Similarity=0.169 Sum_probs=94.5
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-----EEEEEEcCCCCCHHHHHHHHH
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD-----QVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
.+.++||++|++++++.|.....---.++|.+|||||++|.-++.+.....--. .++-. .+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL-------------D~g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL-------------DLG 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-------------cHH
Confidence 456899999999999999843333345789999999999999998876432111 11111 111
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc--------ccc---ccCcCCCCCCceE-EEEEecChHHH
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN--------LET---VGIPYGDDHKGCK-ILLTSRDRSVL 294 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------~~~---l~~~l~~~~~~~~-iivTtR~~~v~ 294 (1344)
.-.......-..++++..+.+.+.+.++.+|.+|.+++... .+. +..++. .+. -+ |-.||-++.--
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGe-L~~IGATT~~EYRk 313 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGE-LRCIGATTLDEYRK 313 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCC-eEEEEeccHHHHHH
Confidence 11111112234466677777777766699999999886622 111 122222 122 34 44455433211
Q ss_pred H------hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 295 L------KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 295 ~------~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
. ...-.+.+.++.-+.+++..+++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 12345678899999999999987655
No 192
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00026 Score=73.55 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=61.9
Q ss_pred hcCCcceEEEeCCCCCCcC---CcccccCCCCcEEEcCCCCCCCc-ccc-ccccccceeecccCCC--cccChhhhccCc
Q 000701 550 KEMRMLRVVGFSKMQLSSL---PSSMDLLVNLQTLSLDQSMLGDI-AII-GKLKNLEILSMINSDI--VKLPEAFGLLTK 622 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~l-~~i-~~L~~L~~L~l~~~~l--~~lp~~i~~L~~ 622 (1344)
..+..++.|||.+|.|++- -.-+.+|++|++|+|+.|++... ..+ -.+.+|++|-|.|+.+ +.....+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5677888899999988653 33456888899999998887654 555 4778888888888754 455667778888
Q ss_pred ccEEecccc
Q 000701 623 LRLLDLTDC 631 (1344)
Q Consensus 623 L~~L~l~~~ 631 (1344)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888888776
No 193
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.02 E-value=0.0084 Score=64.14 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH-HHHHHHHHHH
Q 000701 154 AFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI-KDIQKEIAEK 228 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~ 228 (1344)
.++|-.++-+.+.+++. .+....|.|+||.|.|||+|.-.+..+.+ ..=...+-|........ .-.++.|.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 57888888888888886 35667899999999999999988887721 11233444555443332 2244555555
Q ss_pred hcccccc-----ccHHHHHHHHHHHHHc-----CCeEEEEEeCCCCccc-------cccccCcCCCCCCceEEEEEecCh
Q 000701 229 LGLILHE-----ETVSRRASRLYERLKE-----EKKILVVLDNLWKCLN-------LETVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 229 l~~~~~~-----~~~~~~~~~l~~~l~~-----~~~~LlvlDdv~~~~~-------~~~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
+...... .+-.+....+.+.+.. +.++++|+|+++-... +.-+...-....|-+-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 5432211 1223344556666653 3468888988875422 111111112245778889999954
Q ss_pred H-------HHHhhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 292 S-------VLLKMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 292 ~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
. |-.++....++-+..++-++...++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3 22344444566677888899999999887
No 194
>PRK08116 hypothetical protein; Validated
Probab=97.00 E-value=0.0034 Score=68.74 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
..+.++|.+|+|||.||..+++....+ -..+++++ ..+++..+........ ......+.+.+. +-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV-NA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhc-CC-
Confidence 458999999999999999999988754 34466765 3445555554443211 111223444453 23
Q ss_pred EEEEEeCCCC--cccccc--ccCcCCCC-CCceEEEEEecCh
Q 000701 255 ILVVLDNLWK--CLNLET--VGIPYGDD-HKGCKILLTSRDR 291 (1344)
Q Consensus 255 ~LlvlDdv~~--~~~~~~--l~~~l~~~-~~~~~iivTtR~~ 291 (1344)
=||||||+.. ..+|.. +...+... ..+..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999953 334432 22111111 2345688988754
No 195
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0084 Score=62.60 Aligned_cols=171 Identities=23% Similarity=0.256 Sum_probs=98.6
Q ss_pred ccccchHHHHHHHHHHHH----------cC--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 153 EAFESRFSTLRDIRNALT----------NA--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----------~~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
.++.|-+..++.|.+++. .. .-+-|.++|++|.||+.||+.|+..... -|++++. .+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSS----SD 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSS----SD 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeeh----HH
Confidence 346677788888887754 12 2467999999999999999999987652 2455554 23
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---------cc-----ccccCcCC--CCCCceEE
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---------NL-----ETVGIPYG--DDHKGCKI 284 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~-----~~l~~~l~--~~~~~~~i 284 (1344)
+..+.+. ..+..+..+++-..+.++-+|.+|+++... .- +.+...-. ....|.-|
T Consensus 202 LvSKWmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSKWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 3333321 224556667776667899999999987541 11 11111111 12345556
Q ss_pred EEEecChHHHHhh---CCCCcEEccCCCHHHH-HHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 285 LLTSRDRSVLLKM---GSAPPFLIGVLNEEEA-WRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 285 ivTtR~~~v~~~~---~~~~~~~l~~L~~~e~-~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
+=+|....+.... .-...|.+ ||++..| ..+|+-++|+....- .+.-.+.++++..|.-
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCC
Confidence 6677766554411 11223333 4554444 457777777544322 1233456666666643
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.025 Score=63.12 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC---E-E----EEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 161 TLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFD---Q-V----VFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 161 ~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~-~----~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
.-+.+...+..++. +...++|+.|+||+++|+.++...--+.... + . -++..+..+|+..+..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-------- 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-------- 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc--------
Confidence 34566777766554 5778999999999999999998653211110 0 0 0000000111000000
Q ss_pred ccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecCh-HHHHh-hCCCCcE
Q 000701 232 ILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDR-SVLLK-MGSAPPF 303 (1344)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~-~v~~~-~~~~~~~ 303 (1344)
.....-..+.+..+.+.+. .+++-++|+|+++... ....+...+-.-.+++.+|++|.+. .+... .+-...+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0000011223333333332 3677789999998763 3444444444444566666666543 43332 2234678
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000701 304 LIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 304 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
.+.+++.+++.+.+....+.. ...+...++.++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999999888765321 112556788899999633
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.96 E-value=0.0074 Score=60.59 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHcCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC------------------CCCEEEEEEcCCC--
Q 000701 157 SRFSTLRDIRNALTNANAG-IIGVYGMGGIGKTTLVKAVARQAKERK------------------LFDQVVFSEVSQT-- 215 (1344)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~------------------~f~~~~wv~~~~~-- 215 (1344)
|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..+++..--.. ....+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4567778888888876654 689999999999999999998653221 1223444444332
Q ss_pred -CCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecChH
Q 000701 216 -PNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRDRS 292 (1344)
Q Consensus 216 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~~~ 292 (1344)
...+++. ++...+..... .+++-++|+|+++.. ++..++...+-....++.+|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 3343333 33333322110 256778999999876 445555544444456788888887653
Q ss_pred -HHH-hhCCCCcEEccCC
Q 000701 293 -VLL-KMGSAPPFLIGVL 308 (1344)
Q Consensus 293 -v~~-~~~~~~~~~l~~L 308 (1344)
+.. ..+-...+.+.++
T Consensus 144 ~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GS-HHHHTTSEEEEE---
T ss_pred HChHHHHhhceEEecCCC
Confidence 222 2222334555554
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.95 E-value=0.0016 Score=64.37 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=38.9
Q ss_pred cceeecccCCCcccChhhhccCcccEEeccccccccccChhhhccCCcCCEEEcccccccceeccccccccccchhhhcC
Q 000701 600 LEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMH 679 (1344)
Q Consensus 600 L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 679 (1344)
...+||+.|.+..++. +..+..|.+|.+.+| .++.+.+..-.-+.+|+.|.+.+|.+. .-..+..|..
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~----------~l~dl~pLa~ 111 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ----------ELGDLDPLAS 111 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh----------hhhhcchhcc
Confidence 3444444444433332 334455555555555 455554442223344555555555442 1122334555
Q ss_pred CCCCcEEEEEeCCC
Q 000701 680 LPRLTSLEIDIGND 693 (1344)
Q Consensus 680 l~~L~~L~l~~~~~ 693 (1344)
+++|+.|.+-+|..
T Consensus 112 ~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPV 125 (233)
T ss_pred CCccceeeecCCch
Confidence 66666666666654
No 199
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.94 E-value=0.00014 Score=77.64 Aligned_cols=242 Identities=18% Similarity=0.143 Sum_probs=128.2
Q ss_pred CCCCcceeecccCCCc-ccccccHHHHhcCCcceEEEeCCCCC----CcCCc-------ccccCCCCcEEEcCCCCCC--
Q 000701 524 EYPKLEFLFMCSKDPF-VEINISKSFFKEMRMLRVVGFSKMQL----SSLPS-------SMDLLVNLQTLSLDQSMLG-- 589 (1344)
Q Consensus 524 ~~~~Lr~L~l~~~~~~-~~~~l~~~~f~~l~~Lr~L~L~~~~i----~~lp~-------~i~~L~~Lr~L~L~~~~i~-- 589 (1344)
.+..+..+.+.++..- .-.+.-...+.+.+.||..++++... ..+|+ .+-.+.+|++|+|++|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4455666666665530 01123344557777888888886542 23443 3446668999999988542
Q ss_pred ---Cc-cccccccccceeecccCCCcccCh--------------hhhccCcccEEeccccccccccChh----hhccCCc
Q 000701 590 ---DI-AIIGKLKNLEILSMINSDIVKLPE--------------AFGLLTKLRLLDLTDCFQLKVIAPN----VLSSLIR 647 (1344)
Q Consensus 590 ---~l-~~i~~L~~L~~L~l~~~~l~~lp~--------------~i~~L~~L~~L~l~~~~~l~~~~~~----~l~~L~~ 647 (1344)
.+ .-+..++.|++|.|.+|.+...-. -++.-++|+.+...+| .+..-+.. .+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccc
Confidence 23 557778889999999887643221 1233456666666665 44433321 1344556
Q ss_pred CCEEEcccccccceeccccccccccchhhhcCCCCCcEEEEEeCCCCCCCCccccccCceeEEEecCCCCCCcccceecc
Q 000701 648 LEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMAD 727 (1344)
Q Consensus 648 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~ 727 (1344)
|+.+.+..|.+.... .......+.++++|+.|++..|.+..-.... +
T Consensus 187 leevr~~qN~I~~eG-------~~al~eal~~~~~LevLdl~DNtft~egs~~-------------------------L- 233 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEG-------VTALAEALEHCPHLEVLDLRDNTFTLEGSVA-------------------------L- 233 (382)
T ss_pred cceEEEecccccCch-------hHHHHHHHHhCCcceeeecccchhhhHHHHH-------------------------H-
Confidence 666666555442110 1122345666677777777665443211100 0
Q ss_pred ccccCccceeeccccceeeccccccchhh---ccCCCcccccccccEEEEccCcCChhh--hhhhhhccCCCccEEEEcc
Q 000701 728 DWASGTLNIYVWTSCKTLTLYNLINLERI---CSDPLKVESFNELRTMKIENCDKLSNI--FLLSATNCLPGLERIAVID 802 (1344)
Q Consensus 728 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~~~~l~~l~~L~~L~L~~ 802 (1344)
-..+..+++|+.|++.+|.- +.- .....-....|+|+.|.+.+|.--.+- .....+...|.|++|+|++
T Consensus 234 -----akaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 234 -----AKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred -----HHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 00111355666666666521 110 000000124688888888877421111 0112344578899999988
Q ss_pred Ccc
Q 000701 803 CSN 805 (1344)
Q Consensus 803 c~~ 805 (1344)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 764
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.018 Score=70.34 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred ccccchHHHHHHHHHHHH-------c--CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT-------N--ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.++.++.+.+.+. + ...++....||.|||||.||+.++...-.. =+..+-++.|+.-.. .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~Ek----H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEK----H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHH----H
Confidence 357899999999999987 1 233577889999999999999999877211 033444433332111 1
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.+.+-+|.+..-..-++ -..+-+...+....+++||+++..
T Consensus 565 sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 23333443322111111 123444454333448888999865
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.93 E-value=0.0022 Score=64.35 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=71.5
Q ss_pred CCcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 150 TGYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
....++||-++.++++.-...+++.+-+.|.||+|+||||-+...++..--...-+.+.-.+.|+...+.-+..+|-.-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 33456899999999888888889999999999999999999998888765433345566666666666655555542211
Q ss_pred ccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 230 GLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.. ...+..++.-++|||+.++.
T Consensus 104 Q~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 QK--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred Hh--------------hccCCCCceeEEEeeccchh
Confidence 00 00111367778999999876
No 202
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0052 Score=71.89 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=113.2
Q ss_pred ccccchHHHHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh--
Q 000701 153 EAFESRFSTLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL-- 229 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-- 229 (1344)
++++|.+...+.|...+..++. ......|+-|+||||+|+.++...--... ...++...-...++|...-
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcc
Confidence 4579999999999999986554 46778999999999999999986642210 1111111112223332220
Q ss_pred ---ccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecCh-HHHH-hhC
Q 000701 230 ---GLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRDR-SVLL-KMG 298 (1344)
Q Consensus 230 ---~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~~-~v~~-~~~ 298 (1344)
..+.......+.++.+.+... +++.-+.|+|+|+.. ..|..+..-+-.-....+.|++|++. .+.. ..+
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 000011122344445555543 366678999999866 56777666555545566666665543 3332 334
Q ss_pred CCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 299 SAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 299 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
-.+.+.++.++.++-...+...+....-.- .++....|+++.+|..
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSL 214 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCCh
Confidence 457899999999999999888885333222 2345666777777754
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.013 Score=67.56 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
+.-|.++|++|.|||-||+.|++..... |+++.. .+++.... | ..+..+..++++....-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKG----PELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKG----PELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecC----HHHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999988744 455543 23333222 1 23456677888887789
Q ss_pred eEEEEEeCCCCcc-------c------cccccCcCCC--CCCceEEEEEecChHHHH-h----hCCCCcEEccCCCHHHH
Q 000701 254 KILVVLDNLWKCL-------N------LETVGIPYGD--DHKGCKILLTSRDRSVLL-K----MGSAPPFLIGVLNEEEA 313 (1344)
Q Consensus 254 ~~LlvlDdv~~~~-------~------~~~l~~~l~~--~~~~~~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~e~ 313 (1344)
+++|.||+++... . ..++...+.. ...|.-||-+|...++.. . ..-.....++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997551 1 1222222322 234666777776554433 1 12335677888889999
Q ss_pred HHHHHHHhC
Q 000701 314 WRLFKMTAG 322 (1344)
Q Consensus 314 ~~lf~~~~~ 322 (1344)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999998885
No 204
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00046 Score=71.76 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=96.9
Q ss_pred hhccchHhhhhcccchhcccccCCCcccCCCceEEEEEcCCcccccchhHHhhcCCcceEEEEcCceeeEecCCCccccc
Q 000701 1052 KIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKH 1131 (1344)
Q Consensus 1052 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~ 1131 (1344)
..+|.|+.|+++.|++...... .| ....+|++|-+.+..+.-.-..+.+..+|.+++|+++-|++..+--++...++
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~-lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~- 170 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKS-LP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED- 170 (418)
T ss_pred hcCccceEeeccCCcCCCcccc-Cc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc-
Confidence 4467777777777775443211 11 12356677766644443333345567778888888886655543333322221
Q ss_pred cccccccccceeeccccchHHHHHhhcCCCcccccccceeEeecccccccccccCCcccccccccEEEEecCCCcccccc
Q 000701 1132 VDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVT 1211 (1344)
Q Consensus 1132 ~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 1211 (1344)
+.+.+++++. ..|+...|......-..++++..+-+..||- .+.....+...++.+-.|.+.. +++.++..
T Consensus 171 ----~s~~v~tlh~---~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~-~~idswas 241 (418)
T KOG2982|consen 171 ----WSTEVLTLHQ---LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGA-NNIDSWAS 241 (418)
T ss_pred ----cchhhhhhhc---CCcHHHHHHHHHhHHhhcccchheeeecCcc-cchhhcccCCCCCcchhhhhcc-cccccHHH
Confidence 2245666666 5555544444444445567777777777652 2222111344556666677765 56666644
Q ss_pred hhhHhhhcccceEEEcccccceEE
Q 000701 1212 CSVAKSLERLVMLSISGCSAMRQV 1235 (1344)
Q Consensus 1212 ~~~~~~L~~L~~L~i~~c~~l~~~ 1235 (1344)
-..+...++|..|.++..|....+
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHcCCchhheeeccCCcccccc
Confidence 445667777888888777765544
No 205
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.87 E-value=0.019 Score=63.02 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHH
Q 000701 162 LRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 162 ~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 222 (1344)
++++..++.. .+-|.+.|++|+|||++|+.++.... ...+++++....+..+++
T Consensus 11 ~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 4455555543 24567999999999999999987442 124556666655555544
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.86 E-value=0.0067 Score=77.54 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=61.2
Q ss_pred ccccchHHHHHHHHHHHHc-------C--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTN-------A--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|+.++...-.. ....+-++.+...+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 4578999999999988851 1 23478999999999999999998876322 122333333321111 1
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.+.+-+|....-... .....+.+.+.+.+.-+|+||+++..
T Consensus 640 ~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111222221111000 01112344455567789999999755
No 207
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.33 Score=49.73 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=82.6
Q ss_pred cccccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH
Q 000701 152 YEAFESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI 218 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 218 (1344)
+.++-|-+-.++++.+.+. -+.++-|.++|++|.|||.||+.|++.-... |-. +-.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--fir-----vvg---- 222 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIR-----VVG---- 222 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--eee-----ecc----
Confidence 4445566666666666654 1456789999999999999999999877643 422 211
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc--cc--------------cccCcC--CCCCC
Q 000701 219 KDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN--LE--------------TVGIPY--GDDHK 280 (1344)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~--------------~l~~~l--~~~~~ 280 (1344)
.++.. +.+|.. ...+..+++-.+++.+-++.+|+++.... ++ ++.... .+...
T Consensus 223 sefvq---kylgeg------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 223 SEFVQ---KYLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred HHHHH---HHhccC------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 12222 223311 12333455544557778888898875410 10 111111 12356
Q ss_pred ceEEEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 281 GCKILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 281 ~~~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
+.+||++|....-.. ...-.+.++...-+..+-.-.|....
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 788888776432211 11223456665444455555565554
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.84 E-value=0.014 Score=74.50 Aligned_cols=172 Identities=15% Similarity=0.225 Sum_probs=98.4
Q ss_pred cccccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH
Q 000701 152 YEAFESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI 218 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 218 (1344)
-..+.|.+..++.|.+.+. -...+-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 3456777777777776653 0234568999999999999999999876522 2 22221
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc--------------cccccCcCCC--CCCce
Q 000701 219 KDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN--------------LETVGIPYGD--DHKGC 282 (1344)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~l~~--~~~~~ 282 (1344)
.++... .+| ..+..+..+++......+.+|++|+++.... ...+...+.. ...+.
T Consensus 521 ~~l~~~---~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEILSK---WVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHHhhc---ccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 011 1233445566655557789999999875410 0111111111 12345
Q ss_pred EEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 283 KILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 283 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
.||.||....... .+ .-...+.+...+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5666776543332 11 234678899999999999998776432221111 1455677777653
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.043 Score=62.08 Aligned_cols=164 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEEEEEcCCCCCHH
Q 000701 161 TLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER--------------------KLFDQVVFSEVSQTPNIK 219 (1344)
Q Consensus 161 ~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~ 219 (1344)
.-+.+.+.+..++. +.+.+.|+.|+||+++|..++...--. .|-| +.++.-....
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~--- 85 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKGK--- 85 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEeccccc---
Confidence 34567777776554 578899999999999999998866311 1111 2222111000
Q ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecC-hH
Q 000701 220 DIQKEIAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRD-RS 292 (1344)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~-~~ 292 (1344)
..-..+.+..+.+.+. .+++-++|+|+++... +-..+...+-.-.+++.+|++|.+ ..
T Consensus 86 ---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 86 ---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred ---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0001222333333332 3677899999998662 333444444443455655555554 44
Q ss_pred HHHh-hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000701 293 VLLK-MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALT 349 (1344)
Q Consensus 293 v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 349 (1344)
+... .+-.+.+.+.+++.+++.+.+....+ .+ ++.+..+++.++|.|....
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~--~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT--MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC--CC----HHHHHHHHHHcCCCHHHHH
Confidence 4432 23345789999999999988866532 11 2236778999999996443
No 210
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.0024 Score=69.27 Aligned_cols=109 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHH
Q 000701 163 RDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRA 242 (1344)
Q Consensus 163 ~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (1344)
....+|+. ...-+.++|++|+|||.||..+++..... ...++|+++ .+++..+..... .. ..
T Consensus 97 ~~~~~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~~----~~ 158 (269)
T PRK08181 97 AAGDSWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----EL----QL 158 (269)
T ss_pred HHHHHHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----CC----cH
Confidence 33345654 34569999999999999999999877543 234566553 455555543221 11 11
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcc--ccc--cccCcCCCCCCceEEEEEecCh
Q 000701 243 SRLYERLKEEKKILVVLDNLWKCL--NLE--TVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 243 ~~l~~~l~~~~~~LlvlDdv~~~~--~~~--~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
....+.+. +.=|||+||+.... .+. .+...+.....+..+||||...
T Consensus 159 ~~~l~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 159 ESAIAKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 22344442 45599999996541 221 1222222111223588888765
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.78 E-value=0.003 Score=62.50 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=52.2
Q ss_pred HhcCCcceEEEeCCCCCCcCCccccc-CCCCcEEEcCCCCCCCc---cccccccccceeecccCCCcccCh----hhhcc
Q 000701 549 FKEMRMLRVVGFSKMQLSSLPSSMDL-LVNLQTLSLDQSMLGDI---AIIGKLKNLEILSMINSDIVKLPE----AFGLL 620 (1344)
Q Consensus 549 f~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L 620 (1344)
|..++.|.+|.|++|.|..+-+.+.. +.+|..|.|.+|++..+ ..+..++.|++|.+-+|.+...+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45666677777777777666443433 34577777777765554 455566677777777776554432 36677
Q ss_pred CcccEEecccc
Q 000701 621 TKLRLLDLTDC 631 (1344)
Q Consensus 621 ~~L~~L~l~~~ 631 (1344)
++|+.||..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77777777654
No 212
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.031 Score=67.79 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=106.2
Q ss_pred cccccchHHHHHHHH---HHHHc---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHH
Q 000701 152 YEAFESRFSTLRDIR---NALTN---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIK 219 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~---~~l~~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 219 (1344)
-.++.|-++.+++|. ++|.. .-++=|.++|++|+|||-||+.++....+- |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 345667666555554 44542 224678999999999999999999877644 4555442
Q ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc-----------------cccccCcCCCC--CC
Q 000701 220 DIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN-----------------LETVGIPYGDD--HK 280 (1344)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~l~~~--~~ 280 (1344)
++..- .... ...++..++.......++++.+|+++.... +.++....... ..
T Consensus 379 EFvE~-~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 EFVEM-FVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred HHHHH-hccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111 1111 133455666666667889999998875421 11221112111 23
Q ss_pred ceEEEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000701 281 GCKILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 281 ~~~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
+.-++-+|+...+.. .-.-.+.+.++.-+.....++|+.++.......+..++.+ |+...-|.+-|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 344444555444433 1233467888888899999999999964433344455666 999999888653
No 213
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.76 E-value=0.00025 Score=65.02 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=57.0
Q ss_pred hcCCcceEEEeCCCCCCcCCcccccCC-CCcEEEcCCCCCCCc-cccccccccceeecccCCCcccChhhhccCcccEEe
Q 000701 550 KEMRMLRVVGFSKMQLSSLPSSMDLLV-NLQTLSLDQSMLGDI-AIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLD 627 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 627 (1344)
.+..+|...+|++|.++.+|+.|.... .+..|++.+|.++++ ..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 455566667777777777776665443 666667766666665 446666666666666666666666666666666666
Q ss_pred ccccccccccChh
Q 000701 628 LTDCFQLKVIAPN 640 (1344)
Q Consensus 628 l~~~~~l~~~~~~ 640 (1344)
..++ ....+|..
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 6665 44444443
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=96.75 E-value=0.0009 Score=67.52 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEE
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKER-KLFDQVVF 209 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 209 (1344)
+.|.|+|++|+||||+|+.+++..... .+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 45777776
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.74 E-value=0.0088 Score=75.98 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=61.3
Q ss_pred ccccchHHHHHHHHHHHHc-------C--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTN-------A--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.++.++.+.+.+.. . ...++.++|+.|+|||++|+.++.... ...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc---
Confidence 3467888888888888762 1 234688999999999999999998763 2345555544222111
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
+.+.+|....... .+....+.+.+.....-+++||+++..
T Consensus 526 -~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 -VSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 2222222111100 011122344444456679999999865
No 216
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.72 E-value=0.0099 Score=75.02 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=88.3
Q ss_pred ccccchHHHHHHHHHHHHc------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTN------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
...+|.++.++++++++.. ...+++.++|++|+||||+|+.++..... .| +-+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEEcCCCCCHHHhccchh
Confidence 4578999999999988861 34568999999999999999999987642 23 2233444444433322211
Q ss_pred HHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc------cccccCcCCC---------------CCCceEEE
Q 000701 227 EKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN------LETVGIPYGD---------------DHKGCKIL 285 (1344)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~l~~---------------~~~~~~ii 285 (1344)
...|. ........+ ... ...+-++++|+++.... .+.+...+.+ ...+..+|
T Consensus 397 ~~~g~-----~~G~~~~~l-~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-----MPGKLIQKM-AKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-----CCcHHHHHH-Hhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11111 111111111 111 12345789999865421 1111111111 12445566
Q ss_pred EEecChHHHHh-hCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 286 LTSRDRSVLLK-MGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 286 vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.|+....+... .+-...+++.+++.+|-.++.+.+.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 66655433332 1223578899999998888877665
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.064 Score=60.45 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=61.7
Q ss_pred HHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEE-EecChHHHHh-hCCCCcEEccCCCHHH
Q 000701 241 RASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILL-TSRDRSVLLK-MGSAPPFLIGVLNEEE 312 (1344)
Q Consensus 241 ~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e 312 (1344)
.+..+.+.+. .+++-++|+|+++.. .+...+...+-.-.+++.+|+ |++...+... .+-...+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3444444443 356778999999876 344555444444445665555 4444444432 2334688999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000701 313 AWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTI 351 (1344)
Q Consensus 313 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 351 (1344)
..+.+... + .. + ...++..++|.|.....+
T Consensus 196 ~~~~L~~~-~--~~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 196 AAAWLAAQ-G--VA--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHc-C--CC--h----HHHHHHHcCCCHHHHHHH
Confidence 99988775 2 11 1 123577889999755443
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.67 E-value=0.011 Score=61.11 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhcccccc----ccHHHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGLILHE----ETVSRRASRLYER 248 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 248 (1344)
+++|+++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++..... .+..+.+....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999998888888877655 344666766433 34667778889998876422 2334444444444
Q ss_pred HHcCCeEEEEEeCCC
Q 000701 249 LKEEKKILVVLDNLW 263 (1344)
Q Consensus 249 l~~~~~~LlvlDdv~ 263 (1344)
...++.=++++|-..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443344578888764
No 219
>PTZ00494 tuzin-like protein; Provisional
Probab=96.65 E-value=0.39 Score=54.05 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=97.0
Q ss_pred CCCcccccchHHHHHHHHHHHH---cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALT---NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~---~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
+.....++.|+.|-..+.+.|. ...++++++.|.-|.||++|.+....+...- .++|.+... ++-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHH
Confidence 3445678999988777777665 4567899999999999999999998876533 667877654 4556788
Q ss_pred HHHhccccccc--cHHHHHHHHHHHH---HcCCeEEEEEe--CCCCcc-ccccccCcCCCCCCceEEEEEecChHHHHh-
Q 000701 226 AEKLGLILHEE--TVSRRASRLYERL---KEEKKILVVLD--NLWKCL-NLETVGIPYGDDHKGCKILLTSRDRSVLLK- 296 (1344)
Q Consensus 226 ~~~l~~~~~~~--~~~~~~~~l~~~l---~~~~~~LlvlD--dv~~~~-~~~~l~~~l~~~~~~~~iivTtR~~~v~~~- 296 (1344)
.+.++.+.-+. +..+-+..-.... ..++.-+||+- +-.+.. .+.+. ..+.....-|+|++---.+.+...
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 88888754321 1111111111111 13555566653 222221 11111 122223345667765544433221
Q ss_pred --hCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 297 --MGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 297 --~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
.+-...|.+.+++.++|.++.....
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 1223468889999999998876655
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.002 Score=65.67 Aligned_cols=75 Identities=31% Similarity=0.412 Sum_probs=46.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
+..-+.++|+.|+|||.||..+++..-.++ ..+.|++. .+++..+-. ...... .....+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec------Cceeccccc----cccccc----hhhhcCccc--
Confidence 456799999999999999999998776532 23667654 445544432 211111 223445554
Q ss_pred CeEEEEEeCCCCc
Q 000701 253 KKILVVLDNLWKC 265 (1344)
Q Consensus 253 ~~~LlvlDdv~~~ 265 (1344)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4457889999755
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.62 E-value=0.02 Score=73.05 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=96.0
Q ss_pred CcccccchHHHHHHHHHHHHc-------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 151 GYEAFESRFSTLRDIRNALTN-------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~-------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
..+++.|.+..++.+.+++.. ...+-|.++|++|+|||++|+.+++..... .+.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecH----
Confidence 345578999999888887641 234578899999999999999999876422 2223221
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc-------------cccccCcCCCC-CCceE
Q 000701 218 IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN-------------LETVGIPYGDD-HKGCK 283 (1344)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l~~~-~~~~~ 283 (1344)
++... ... .....+..+++......+.+|++|+++.... ...+...+... ..+..
T Consensus 247 --~i~~~--------~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIMSK--------YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHhcc--------ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11110 000 1122334455544446678999999865310 11111111111 12223
Q ss_pred EEE-EecChH-HHHhh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 284 ILL-TSRDRS-VLLKM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 284 iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
++| ||.... +...+ .-...+.+...+.++..++++.......... +.....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 333 454322 22211 1234677888899999999987663222111 1125668888888654
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.58 E-value=0.0068 Score=67.53 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHc----CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccc
Q 000701 157 SRFSTLRDIRNALTN----ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLI 232 (1344)
Q Consensus 157 gR~~~~~~l~~~l~~----~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (1344)
+|....+...+++.. ...+-+.|+|+.|+|||.||..+++....+ .+ .+.++++ .+++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 555555555666652 235679999999999999999999988743 22 3556654 35556665544311
Q ss_pred cccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--ccccc--ccCcC-CCC-CCceEEEEEecC
Q 000701 233 LHEETVSRRASRLYERLKEEKKILVVLDNLWKC--LNLET--VGIPY-GDD-HKGCKILLTSRD 290 (1344)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~~l-~~~-~~~~~iivTtR~ 290 (1344)
......+.+ .+-=||||||+... ..|.. +...+ ... ..+-.+|+||..
T Consensus 207 --------~~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 122334444 46679999999654 34542 22222 111 234457777754
No 223
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.57 E-value=0.008 Score=61.82 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC--C----CHHH-------HHHH
Q 000701 158 RFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT--P----NIKD-------IQKE 224 (1344)
Q Consensus 158 R~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~----~~~~-------~~~~ 224 (1344)
+..+-...++++. +..++.+.|++|.|||.||...+-+.-..+.++.++++.-.-. . -+-+ .+.-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 3445566666666 5579999999999999999999987766688888877643221 1 0111 1112
Q ss_pred HHHHhccccccccHHHHHHHHHHHH---------HcC---CeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecC
Q 000701 225 IAEKLGLILHEETVSRRASRLYERL---------KEE---KKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRD 290 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l---------~~~---~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~ 290 (1344)
+...+..-..... .+.+.+.- .++ ++..+|+|++.+. .++..+... .+.+||+|++--.
T Consensus 83 ~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELFGKEK----LEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHhChHh----HHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 2222221111111 11111100 012 3578999999876 355555443 4578999999866
Q ss_pred hHH
Q 000701 291 RSV 293 (1344)
Q Consensus 291 ~~v 293 (1344)
..+
T Consensus 156 ~Q~ 158 (205)
T PF02562_consen 156 SQI 158 (205)
T ss_dssp ---
T ss_pred eee
Confidence 543
No 224
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.56 E-value=0.0056 Score=64.41 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
-.++|+|..|+|||+++..+..... ..|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 4688999999999999999998876 45887777754
No 225
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.55 E-value=0.028 Score=62.19 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-----CHHHHHHHHHHHhccccccccHHHHHHHHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-----NIKDIQKEIAEKLGLILHEETVSRRASRLY 246 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 246 (1344)
..+..+.|+|++|.|||.+|+.+++..... | +-++.++-. ..+..++++.+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~---------------- 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELESENAGEPGKLIRQRYREAA---------------- 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcCcCCcHHHHHHHHHHHHH----------------
Confidence 345789999999999999999999988654 2 223322211 22233333222110
Q ss_pred HHH-HcCCeEEEEEeCCCCccc------c--------ccccCc--------C------CCCCCceEEEEEecChHHHH-h
Q 000701 247 ERL-KEEKKILVVLDNLWKCLN------L--------ETVGIP--------Y------GDDHKGCKILLTSRDRSVLL-K 296 (1344)
Q Consensus 247 ~~l-~~~~~~LlvlDdv~~~~~------~--------~~l~~~--------l------~~~~~~~~iivTtR~~~v~~-~ 296 (1344)
+.. .++++++|++||++.... . ..+... + ....++..||+||....... .
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 000 136889999999875411 0 011100 0 12245677888886554322 1
Q ss_pred -hCCCC-cEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000701 297 -MGSAP-PFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPI 346 (1344)
Q Consensus 297 -~~~~~-~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 346 (1344)
....+ --.+..-+.++-.++++........+ ..-..+|++...|-|+
T Consensus 285 LlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCceeCCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 11110 01234456677778887776432221 2335667777777664
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.042 Score=64.63 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 157 SRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 157 gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
|-++.+++|.+.+. -...+-|..+||+|.|||++|+.+++..... | +.++. .+++.
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkg----pEL~s 506 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKG----PELFS 506 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccC----HHHHH
Confidence 45555555555543 1456789999999999999999999987644 3 33332 12222
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc-------------cccccCcCCCC--CCceEEEEEe
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN-------------LETVGIPYGDD--HKGCKILLTS 288 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~l~~~--~~~~~iivTt 288 (1344)
... | ..+..+..+++...+-.++++.||+++.... +..+...+... ..+.-||-.|
T Consensus 507 k~v---G------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 507 KYV---G------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred Hhc---C------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 111 1 2234455566666556668999998875421 11111222211 1233334344
Q ss_pred cCh-HHHHh-h---CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 289 RDR-SVLLK-M---GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 289 R~~-~v~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
... .+... + .....+.+..-+.+...++|+.++....-+++ -...+|++++.|.-
T Consensus 578 NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 578 NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED--VDLEELAQATEGYS 637 (693)
T ss_pred CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHhccCC
Confidence 332 22221 1 24467778878888889999999853322222 11345666665553
No 227
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.016 Score=61.57 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
...++.|+|++|+|||++|.+++...... -..++|++... +++..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 35799999999999999999998876533 46789999876 66655544
No 228
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.015 Score=60.57 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 164 DIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 164 ~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.+++.+...+...|.|+|.+|+||||||..+++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555667899999999999999999998763
No 229
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.49 E-value=0.17 Score=58.15 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHc---CCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 158 RFSTLRDIRNALTN---ANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 158 R~~~~~~l~~~l~~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
|+...+.|.+.+.+ ...-+|+|.|.=|+|||++.+.+.+..+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 45567778888874 456799999999999999999999988765
No 230
>PRK07261 topology modulation protein; Provisional
Probab=96.48 E-value=0.0085 Score=60.88 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEE
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKER-KLFDQVVF 209 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 209 (1344)
.|+|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998765422 23455555
No 231
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00025 Score=72.95 Aligned_cols=80 Identities=28% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCCcEEEcCCCCCCCccccccccccceeecccCCCcccChhhhccCcccEEeccccccccccCh-hhhccCCcCCEEEc
Q 000701 575 LVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINSDIVKLPEAFGLLTKLRLLDLTDCFQLKVIAP-NVLSSLIRLEELYM 653 (1344)
Q Consensus 575 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l 653 (1344)
|.+.+.|++.+|.+.++..+.++..|++|.|+-|.|+.|.. +..+++|+.|+|..| .+..+.. .-+.+|++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 34444555555555555555555555555555555555433 445555555555554 3333221 01334444555544
Q ss_pred ccc
Q 000701 654 RNC 656 (1344)
Q Consensus 654 ~~~ 656 (1344)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 443
No 232
>PRK06526 transposase; Provisional
Probab=96.42 E-value=0.0025 Score=68.91 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
..+-+.|+|++|+|||+||..++......+ + .+.|+ +..++...+..... .. ........+ .
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l--~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----AG----RLQAELVKL--G 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHh--c
Confidence 345789999999999999999998765432 2 23442 33445555433211 11 111122333 3
Q ss_pred CeEEEEEeCCCCc
Q 000701 253 KKILVVLDNLWKC 265 (1344)
Q Consensus 253 ~~~LlvlDdv~~~ 265 (1344)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999754
No 233
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0091 Score=67.52 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHc--------CC-CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 159 FSTLRDIRNALTN--------AN-AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 159 ~~~~~~l~~~l~~--------~~-~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
.+|+++++++|.+ ++ ++-|.++|++|.|||-||+.++-...+- | |...+..|+ ++.-..
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------Em~VGv 380 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD------EMFVGV 380 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh------hhhhcc
Confidence 4567788888873 22 4578999999999999999999877654 2 222222232 111111
Q ss_pred ccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 230 GLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
| ..++..++...+..-+++|.+|+++..
T Consensus 381 G--------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 381 G--------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred c--------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 344556777766688999999998765
No 234
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.34 E-value=0.028 Score=72.28 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred ccccchHHHHHHHHHHHHc-------CC--CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTN-------AN--AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~~--~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..-.. -...+.+..+......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhh----
Confidence 3578999999888888762 11 2478899999999999999999765321 1233455544322111
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.+.+-+|........ +....+.+.+.....-+|+||+++..
T Consensus 642 ~~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 112223322111110 01112333333344569999999855
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.31 E-value=0.0061 Score=67.89 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHHHc------CCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 154 AFESRFSTLRDIRNALTN------ANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
.++|.++.++++++++.. ...++++++|++|+||||+|+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999872 23578999999999999999999998864
No 236
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.028 Score=66.10 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP--NIKDIQKEIAEKLGLILHEETVSRRASRLYERLK 250 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 250 (1344)
..+-|.|.|+.|+|||+||+.+++... +...-.+.+++++.-. ..+.+.+.+...+ .+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~- 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEAL- 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHH-
Confidence 346789999999999999999999887 4444456677776532 2333333332211 1122
Q ss_pred cCCeEEEEEeCCCCcc--------ccc-----------cccCcCCCCCCceEEEEEecChHHHH-hh----CCCCcEEcc
Q 000701 251 EEKKILVVLDNLWKCL--------NLE-----------TVGIPYGDDHKGCKILLTSRDRSVLL-KM----GSAPPFLIG 306 (1344)
Q Consensus 251 ~~~~~LlvlDdv~~~~--------~~~-----------~l~~~l~~~~~~~~iivTtR~~~v~~-~~----~~~~~~~l~ 306 (1344)
...+-++||||++-.. +|. ++...+...+...++|.|.....-.. .. -......|.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 3678899999986431 121 11112222223334555554332111 11 112356788
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000701 307 VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 307 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
.+...+-.++++........... .+...-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCc
Confidence 88888888888877643322111 12233378888775
No 237
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.30 E-value=0.019 Score=62.41 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEcCCCCCHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKL----FDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 221 (1344)
...++.|+|++|+|||++|.+++........ ...++|++....++.+.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 3569999999999999999999865432221 257899998887776544
No 238
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.28 E-value=0.00091 Score=61.44 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=69.3
Q ss_pred cceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc-cccccccccceeecc
Q 000701 528 LEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI-AIIGKLKNLEILSMI 606 (1344)
Q Consensus 528 Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~l~ 606 (1344)
|....+.++. ..++|+.+-.+++.+..|++++|.|.++|..+..++.||.|+++.|++... ..+..|.+|-+|+..
T Consensus 55 l~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccch---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 3334444443 466777776777789999999999999999999999999999999988766 777889999999999
Q ss_pred cCCCcccChh
Q 000701 607 NSDIVKLPEA 616 (1344)
Q Consensus 607 ~~~l~~lp~~ 616 (1344)
++.+..+|..
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 9988888754
No 239
>PRK12377 putative replication protein; Provisional
Probab=96.26 E-value=0.021 Score=61.27 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
+...+.++|++|+|||+||..+++....+ ...++++++. +++..+...... .. ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~---~~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN---GQ----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc---cc----hHHHHHHHh--c
Confidence 34689999999999999999999988744 3346676553 455555433321 00 111344444 4
Q ss_pred CeEEEEEeCCCCc
Q 000701 253 KKILVVLDNLWKC 265 (1344)
Q Consensus 253 ~~~LlvlDdv~~~ 265 (1344)
+.-|||+||+...
T Consensus 163 ~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 KVDLLVLDEIGIQ 175 (248)
T ss_pred CCCEEEEcCCCCC
Confidence 6679999999543
No 240
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.02 Score=64.86 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
+.++++++|+.|+||||++..++.....+.....+..++.... ....+-++..++.++..................+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 3579999999999999999999987653322235666664332 2345566667777776554322222233334444
Q ss_pred CCeEEEEEeCCCCc
Q 000701 252 EKKILVVLDNLWKC 265 (1344)
Q Consensus 252 ~~~~LlvlDdv~~~ 265 (1344)
.++-++++|.....
T Consensus 214 ~~~DlVLIDTaG~~ 227 (374)
T PRK14722 214 RNKHMVLIDTIGMS 227 (374)
T ss_pred cCCCEEEEcCCCCC
Confidence 24456779988543
No 241
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.21 E-value=0.017 Score=64.03 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc------cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH------EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 246 (1344)
..+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ ....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45699999999999999999998877543 3557899887766653 3455554321 123333333333
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000701 247 ERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~ 265 (1344)
....++..-++|+|.+...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 3333456779999998643
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=96.20 E-value=0.0088 Score=65.20 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
...+.|+|++|+|||+||..++...... -..+.+++ ..++...+...... . ....+..... .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~------~~~l~~~l~~a~~~----~----~~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT------AADLLLQLSTAQRQ----G----RYKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe------HHHHHHHHHHHHHC----C----cHHHHHHHHh-cC
Confidence 4578899999999999999998775433 12344544 23333333222110 0 1112222222 45
Q ss_pred eEEEEEeCCCCc
Q 000701 254 KILVVLDNLWKC 265 (1344)
Q Consensus 254 ~~LlvlDdv~~~ 265 (1344)
.-++|+||+...
T Consensus 165 ~dlLiiDdlg~~ 176 (259)
T PRK09183 165 PRLLIIDEIGYL 176 (259)
T ss_pred CCEEEEcccccC
Confidence 569999999753
No 243
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.17 E-value=0.025 Score=65.09 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=81.7
Q ss_pred cccchHHHHHHHHHHHH-cCCCe-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEEc
Q 000701 154 AFESRFSTLRDIRNALT-NANAG-IIGVYGMGGIGKTTLVKAVARQAKERK-------------------LFDQVVFSEV 212 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~-~~~~~-~i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 212 (1344)
.++|.+....++..+.. .++.+ .+.++|++|+||||+|..+++..--.. ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 35677777888888887 44444 499999999999999999998775222 1234455555
Q ss_pred CCCCC---HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEE
Q 000701 213 SQTPN---IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLT 287 (1344)
Q Consensus 213 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivT 287 (1344)
+.... ..+..+++.+....... .++.-++++|+++... +-..+...+......+.+|++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 55444 23334444433322111 2677899999998762 223333333333456677777
Q ss_pred ecC-hHHHHhh-CCCCcEEccCCC
Q 000701 288 SRD-RSVLLKM-GSAPPFLIGVLN 309 (1344)
Q Consensus 288 tR~-~~v~~~~-~~~~~~~l~~L~ 309 (1344)
|.. ..+...+ +-...+++.+.+
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred cCChhhccchhhhcceeeecCCch
Confidence 763 2332211 223456666633
No 244
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.014 Score=75.31 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=62.2
Q ss_pred ccccchHHHHHHHHHHHHcC---------CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTNA---------NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~---------~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++...... -...+.++.+.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH--
Confidence 45789999999999888631 13578899999999999999999876322 223445555543221111
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.+-+|....-.. -+....+.+.+......+|+||+++..
T Consensus 641 --~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEeccccC
Confidence 111222111000 000112334444345569999999866
No 245
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.15 E-value=0.064 Score=59.32 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=42.1
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHH
Q 000701 154 AFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (1344)
.|+=+.+....+..++.. .+.|.|.|++|+|||++|+.++...... .+.|.+....+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 444455556667777753 3569999999999999999999988632 335555555554443
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.10 E-value=0.014 Score=68.79 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHH-Hc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERL-KE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~ 251 (1344)
..++..++|++|.||||||.-++++.. | .|+=|++|+..+...+-..|...+.... .+ ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccC
Confidence 357899999999999999999998775 2 3778899999998888888766553211 11 12
Q ss_pred CCeEEEEEeCCCCc
Q 000701 252 EKKILVVLDNLWKC 265 (1344)
Q Consensus 252 ~~~~LlvlDdv~~~ 265 (1344)
+++.-||+|+++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 67788899998754
No 247
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.22 Score=50.85 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=86.0
Q ss_pred ccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHH
Q 000701 155 FESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (1344)
+-|-++.+++|.+.+. -..++-+.++|++|.|||-||+.|++.-. +.|+.++.. +-+
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs---elv 218 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS---ELV 218 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH---HHH
Confidence 3345777777777664 13567789999999999999999987543 456777652 122
Q ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------------cccccCcCC--CCCCceE
Q 000701 222 QKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN----------------LETVGIPYG--DDHKGCK 283 (1344)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~l~--~~~~~~~ 283 (1344)
++-|-+ ....+..++--..+.-+-++..|++++... .-++...+. ....+.+
T Consensus 219 qk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 219 QKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 222211 112222333333345667788888765410 001111111 1245778
Q ss_pred EEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHh
Q 000701 284 ILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTA 321 (1344)
Q Consensus 284 iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~ 321 (1344)
||++|..-++.. .....+.++..+-+++.-.++++-+.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888886544433 22334678888888888888887665
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.029 Score=62.15 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=50.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
..++++|+|+.|+||||++..++.....+..-..+..++..... ...+.+....+.++...........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 45799999999999999999999877643111345666654322 2233334445555544432222333334444442
Q ss_pred CCeEEEEEeCC
Q 000701 252 EKKILVVLDNL 262 (1344)
Q Consensus 252 ~~~~LlvlDdv 262 (1344)
..=++++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2347777754
No 249
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.07 E-value=0.013 Score=73.19 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=59.9
Q ss_pred cccchHHHHHHHHHHHHc---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 154 AFESRFSTLRDIRNALTN---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
.++|.++.++.+.+.+.. .....+.++|++|+|||++|+.++..... ..+.++.++......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhccccc----
Confidence 478889999988888761 12347899999999999999999887731 233444443222111
Q ss_pred HHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
+.+-+|....... .+....+.+.+.+....+++||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211000 001112333444456679999999876
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.06 E-value=0.056 Score=57.88 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHHc--CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccH
Q 000701 161 TLRDIRNALTN--ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETV 238 (1344)
Q Consensus 161 ~~~~l~~~l~~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 238 (1344)
.+..+.++... .+...+.++|.+|+|||+||..+++....+ -..+++++ ..++...+...... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~-- 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SET-- 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccc--
Confidence 34444444432 223578999999999999999999988654 24566664 34455554443321 111
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 239 SRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 239 ~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
....+.+.+. +.=+||+||+...
T Consensus 152 --~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 --SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1123444453 4458888999654
No 251
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.13 Score=61.53 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHHHH---------cC---CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHH
Q 000701 154 AFESRFSTLRDIRNALT---------NA---NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---------~~---~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (1344)
++=|-++.+.+|.+-+. .. +..-|.++|++|.|||-+|+.|+....-. |++|..+ ++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----EL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----EL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----HH
Confidence 34456777778887765 11 23468899999999999999999988643 5565441 22
Q ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 222 QKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
+.. .+| ..++-+..++++..+-.+|+|.+|++++.
T Consensus 742 LNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 742 LNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 221 122 22344667888887789999999999865
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.01 E-value=0.023 Score=63.13 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc------cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH------EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 246 (1344)
..+++-|+|++|+||||||.+++...... -..++|++..+.+++. .++.++.+.+ ..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 35689999999999999999998776543 3568899887776653 3444443221 122333333333
Q ss_pred HHHHcCCeEEEEEeCCCC
Q 000701 247 ERLKEEKKILVVLDNLWK 264 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~ 264 (1344)
....++..-++|+|.|..
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 323345667999999764
No 253
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.01 E-value=0.021 Score=73.61 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred ccccchHHHHHHHHHHHHc-------CC--CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTN-------AN--AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~~--~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
..++|.++.++.+.+.+.. .+ ...+.++|+.|+|||++|+.+++..-.. -...+-+..++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4578999999999888761 11 2356799999999999999999876211 123344444432222221
Q ss_pred HHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCC-----------CCceEEEEEecC
Q 000701 224 EIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDD-----------HKGCKILLTSRD 290 (1344)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~-----------~~~~~iivTtR~ 290 (1344)
.+-+|....-.. -+....+.+.+.....-++++|+++... .+..+...+..+ ..++.+|+||..
T Consensus 585 --~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 585 --SKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred --HHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111222110000 0011124445544555789999998652 233333222221 245667777765
Q ss_pred h
Q 000701 291 R 291 (1344)
Q Consensus 291 ~ 291 (1344)
.
T Consensus 662 g 662 (821)
T CHL00095 662 G 662 (821)
T ss_pred c
Confidence 3
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.12 Score=61.09 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=98.7
Q ss_pred cccchHHHHHHHHHHHH----------cC---CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 154 AFESRFSTLRDIRNALT----------NA---NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~----------~~---~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
++-|..+.++.+.+.+. .. ...-|.++|++|.|||.||..++.....+ ++++.. + +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKG---P-E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKG---P-E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecC---H-H
Confidence 34455555555666554 11 12358899999999999999999876543 566644 2 2
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc---c----------cccccCcCCC--CCCceEEE
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL---N----------LETVGIPYGD--DHKGCKIL 285 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~----------~~~l~~~l~~--~~~~~~ii 285 (1344)
++.+ .+| ..++.+..++++.+.-++|++.+|++++.. . ..++...+.. +-.|.-|+
T Consensus 737 lL~K---yIG------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSK---YIG------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHH---Hhc------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 2222 233 124556678888877899999999998652 1 1222222221 23455555
Q ss_pred E-EecChHHHHhh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 286 L-TSRDRSVLLKM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 286 v-TtR~~~v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
- |||..-+.+.. +-.+.+.-..-++.|-.++|+.....-..+. ....+.++.+.+|.--|
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 4 55544333311 1223444555667888888888774211111 12245677777776543
No 255
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.99 E-value=0.0064 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 256
>PRK09354 recA recombinase A; Provisional
Probab=95.97 E-value=0.028 Score=62.91 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc------cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH------EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 246 (1344)
..+++-|+|++|+||||||.+++...... -..++|++....+++. .++.+|.+.+ ....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35689999999999999999998776543 3568899988877753 3455554321 123333333333
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000701 247 ERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~ 265 (1344)
..+.++..-++|+|.|...
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 3333456679999998643
No 257
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.97 E-value=0.021 Score=69.22 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+.++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999888776666678899999999999999998754
No 258
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00091 Score=68.94 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCCcccccCCCCcEEEcCCCCCCCc
Q 000701 525 YPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGDI 591 (1344)
Q Consensus 525 ~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l 591 (1344)
+.+.+-|.++++. +.+|. +..+|+.|.||.||-|.|+.| ..+..|++|+.|+|+.|.|.++
T Consensus 18 l~~vkKLNcwg~~---L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCC---ccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccH
Confidence 3344445555544 22222 335566666666666666555 2255555555555555555444
No 259
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.8 Score=50.58 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHHH---------c---CCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 154 AFESRFSTLRDIRNALT---------N---ANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---------~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
++.|-.+.++-|.+++. . ..=+-|.++|++|.|||-||+.|+.....
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 45666666666766654 1 12357899999999999999999998863
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.93 E-value=0.018 Score=64.72 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
....+.++|+.|+|||+||..+++....+. ..|+|+++. +++..+...-. .... + .....+.+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~------~l~~~l~~~~~---~~~~--~-~~~~~~~l~-- 245 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTAD------ELIEILREIRF---NNDK--E-LEEVYDLLI-- 245 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHH------HHHHHHHHHHh---ccch--h-HHHHHHHhc--
Confidence 347799999999999999999999886542 356776653 34444432211 0000 1 111133442
Q ss_pred CeEEEEEeCCCCc--cccc--cccCcCCCC-CCceEEEEEecCh
Q 000701 253 KKILVVLDNLWKC--LNLE--TVGIPYGDD-HKGCKILLTSRDR 291 (1344)
Q Consensus 253 ~~~LlvlDdv~~~--~~~~--~l~~~l~~~-~~~~~iivTtR~~ 291 (1344)
.-=|||+||+... ..|. .+...+... ..+-.+||||...
T Consensus 246 ~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 246 NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3358999999654 2332 222222111 1234588888753
No 261
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.93 E-value=0.019 Score=62.28 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=79.6
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHH-HHhhcCCCCEEE-E---EEcCCCC---------CHH
Q 000701 154 AFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVAR-QAKERKLFDQVV-F---SEVSQTP---------NIK 219 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~-~~~~~~~f~~~~-w---v~~~~~~---------~~~ 219 (1344)
.+-+|..+-.--+++|.++..+.|.+.|.+|.|||.||-.+.- +.-+++.|+.++ . +.+++.. .+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 4566888888888999999999999999999999999887763 333445565433 2 2333221 122
Q ss_pred HHHHHHHHHhccccccc-cHHHHHHHHHHHHH---------cC---CeEEEEEeCCCCccccccccCcCCCCCCceEEEE
Q 000701 220 DIQKEIAEKLGLILHEE-TVSRRASRLYERLK---------EE---KKILVVLDNLWKCLNLETVGIPYGDDHKGCKILL 286 (1344)
Q Consensus 220 ~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~---------~~---~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiv 286 (1344)
..+..|...+..-.... ...+.++.+..+-. ++ ..-++|+|++.+.... ++...+...++|+||+.
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph-eikTiltR~G~GsKIVl 383 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH-ELKTILTRAGEGSKIVL 383 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH-HHHHHHHhccCCCEEEE
Confidence 33334433332211111 11222222211100 12 3458899999877432 23333445678999999
Q ss_pred EecChHH
Q 000701 287 TSRDRSV 293 (1344)
Q Consensus 287 TtR~~~v 293 (1344)
|--..++
T Consensus 384 ~gd~aQi 390 (436)
T COG1875 384 TGDPAQI 390 (436)
T ss_pred cCCHHHc
Confidence 8765443
No 262
>PRK06696 uridine kinase; Validated
Probab=95.89 E-value=0.014 Score=62.58 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHH---cCCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 157 SRFSTLRDIRNALT---NANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 157 gR~~~~~~l~~~l~---~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
.|++.+++|.+.+. .+...+|+|.|.+|+||||+|+.++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47778888888886 355679999999999999999999988864
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=95.88 E-value=0.14 Score=64.38 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=93.2
Q ss_pred EEc--CCCCcHHHHHHHHHHHHhhcCCC-CEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeE
Q 000701 179 VYG--MGGIGKTTLVKAVARQAKERKLF-DQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKI 255 (1344)
Q Consensus 179 I~G--~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 255 (1344)
+.| |.++||||+|..++++.-.+ .+ ..++-+++++......+.. +++.+....+ +...+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~--------------~~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIRE-KVKEFARTKP--------------IGGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHH-HHHHHHhcCC--------------cCCCCCE
Confidence 447 88999999999999876321 12 2466778877666654433 3332211000 0012457
Q ss_pred EEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecC-hHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchH
Q 000701 256 LVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRD-RSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELN 331 (1344)
Q Consensus 256 LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~ 331 (1344)
++|+|+++... +...+...+..-...+++|+++.+ ..+.... +-...+.+.+++.++....+...+...... -.+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~ 711 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTE 711 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCH
Confidence 99999999873 444444333332345555555543 3333322 234689999999999988888766322111 114
Q ss_pred HHHHHHHHHhCCChH-HHHHH
Q 000701 332 STARNVAMACGGLPI-ALTTI 351 (1344)
Q Consensus 332 ~~~~~i~~~~~g~Pl-ai~~~ 351 (1344)
+....|++.++|-+. |+..+
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 567899999999874 44443
No 264
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.012 Score=62.35 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
-|+|.++||+|.|||+|++..+++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999998765
No 265
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.87 E-value=0.034 Score=54.77 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
+...+.|+|+.|.||||+.+.++...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 4568999999999999999999987764
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.035 Score=60.12 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHH
Q 000701 163 RDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRA 242 (1344)
Q Consensus 163 ~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (1344)
..+.+++. +..-++++|++|+|||.||..+++... +.. -.+.++++ .+++.++...... .. ..
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~~------~el~~~Lk~~~~~----~~---~~ 158 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFITA------PDLLSKLKAAFDE----GR---LE 158 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEEH------HHHHHHHHHHHhc----Cc---hH
Confidence 33444444 667899999999999999999999987 322 34556554 5566666555432 01 11
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCc
Q 000701 243 SRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 243 ~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
..+.+.+ .+-=||||||+...
T Consensus 159 ~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 159 EKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHh--hcCCEEEEecccCc
Confidence 1233333 34559999999764
No 267
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.049 Score=63.79 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
..++|+|+|++|+||||++..++.....+.....+..++..... ...+.++...+.++...........+....+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--
Confidence 45799999999999999999998876543223445555543211 223333444444554333322333344444444
Q ss_pred CCeEEEEEeCCCC
Q 000701 252 EKKILVVLDNLWK 264 (1344)
Q Consensus 252 ~~~~LlvlDdv~~ 264 (1344)
.+.=+|++|....
T Consensus 427 ~~~DLVLIDTaG~ 439 (559)
T PRK12727 427 RDYKLVLIDTAGM 439 (559)
T ss_pred ccCCEEEecCCCc
Confidence 2455888888753
No 268
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.86 E-value=0.054 Score=58.43 Aligned_cols=93 Identities=25% Similarity=0.391 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhcc-------ccccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGL-------ILHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 239 (1344)
.+...++|.|.+|+|||+|++.+++..+.+. -+.++++-+++.. .+.++.+++...=.. ...++...
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~-~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAH-GGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4557899999999999999999999887541 2456667776554 355666665432111 11111111
Q ss_pred --HHHHHHHHHHH-c-CCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK-E-EKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. + ++++|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12233455554 3 89999999998543
No 269
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.11 Score=63.28 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
..+.+.++|++|.|||.||+.+++..... |-.+.+ . +++.+.. | ..+..+..++....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~-----~----~l~sk~v---G------esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKG-----S----ELLSKWV---G------ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeC-----H----HHhcccc---c------hHHHHHHHHHHHHHcC
Confidence 44589999999999999999999966533 432221 1 1111111 0 1122334455555457
Q ss_pred CeEEEEEeCCCCccccc-------------cccCcCC--CCCCceEEEEEecChHHHH-h----hCCCCcEEccCCCHHH
Q 000701 253 KKILVVLDNLWKCLNLE-------------TVGIPYG--DDHKGCKILLTSRDRSVLL-K----MGSAPPFLIGVLNEEE 312 (1344)
Q Consensus 253 ~~~LlvlDdv~~~~~~~-------------~l~~~l~--~~~~~~~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~e 312 (1344)
.++.|.+|+++....+. .+...+. ....+..||-||....... . ..-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 88999999987652221 1112221 1233444555555443332 1 1234578899999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhCC
Q 000701 313 AWRLFKMTAGDDVEHRELNSTARNVAMACGG 343 (1344)
Q Consensus 313 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 343 (1344)
..+.|+.+..+.............+++...|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999986433221112223445554544
No 270
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.83 E-value=0.046 Score=58.94 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEcCCCCCHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERK----LFDQVVFSEVSQTPNIKDIQ 222 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 222 (1344)
...++.|+|++|+|||++|.+++....... .-..++|+.....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 356999999999999999999987654321 01568899988777765543
No 271
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.59 Score=53.09 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCe
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKK 254 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 254 (1344)
|--.++||+|.|||+++..+++.+. |+.. =..++...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 4568999999999999999998775 5532 233333222222 2322221 1455
Q ss_pred EEEEEeCCCCccc-----------cc---------cccCcC---CCCCCceE-EEEEecChHHHH-----hhCCCCcEEc
Q 000701 255 ILVVLDNLWKCLN-----------LE---------TVGIPY---GDDHKGCK-ILLTSRDRSVLL-----KMGSAPPFLI 305 (1344)
Q Consensus 255 ~LlvlDdv~~~~~-----------~~---------~l~~~l---~~~~~~~~-iivTtR~~~v~~-----~~~~~~~~~l 305 (1344)
-+||+.|++-.-+ .+ .+...+ ...+.+-| ||+||...+-.. ..+....+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 6666776653311 11 011111 11121234 566776543322 2233456888
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH-HhcC
Q 000701 306 GVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARA-LRNR 358 (1344)
Q Consensus 306 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~-l~~~ 358 (1344)
..-+.+....|+++..+...++. ++.+|.+...|.-+.=+.++.. |+++
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999999987544333 3445555444544433444433 4444
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.80 E-value=0.053 Score=60.64 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=43.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEcCCCCCHHHHHHHHHHHhccc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER----KLFDQVVFSEVSQTPNIKDIQKEIAEKLGLI 232 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (1344)
...++-|+|++|+|||+++.+++-..... ..-..++|++....++++.+. ++++.++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 34688999999999999999987544321 112468999999989888875 456666543
No 273
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.80 E-value=0.0039 Score=64.21 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=80.6
Q ss_pred hcCCcceEEEeCCCCCCc-----CCcccccCCCCcEEEcCCCCC-----------CCc-cccccccccceeecccCCCc-
Q 000701 550 KEMRMLRVVGFSKMQLSS-----LPSSMDLLVNLQTLSLDQSML-----------GDI-AIIGKLKNLEILSMINSDIV- 611 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i-----------~~l-~~i~~L~~L~~L~l~~~~l~- 611 (1344)
..+..+..+|||||.|.+ +-..|.+-.+|+.-+++.-.. ..+ +.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 457788889999998853 445566677888888775421 122 55667888888888887443
Q ss_pred ccC----hhhhccCcccEEeccccccccccChhhhc-------------cCCcCCEEEcccccccceeccccccccccch
Q 000701 612 KLP----EAFGLLTKLRLLDLTDCFQLKVIAPNVLS-------------SLIRLEELYMRNCFVQWEVRGVNTERSCAGL 674 (1344)
Q Consensus 612 ~lp----~~i~~L~~L~~L~l~~~~~l~~~~~~~l~-------------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 674 (1344)
..| ..|++-+.|.||.+++| .++-+..+.|+ +-+.|+....+.|.+.... ....-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs-------~~~~a 178 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS-------KELSA 178 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc-------HHHHH
Confidence 223 34667778888888887 66555444333 2245566655555442110 01111
Q ss_pred hhhcCCCCCcEEEEEeCCCC
Q 000701 675 DELMHLPRLTSLEIDIGNDD 694 (1344)
Q Consensus 675 ~~L~~l~~L~~L~l~~~~~~ 694 (1344)
..|..+.+|+.+.+..|.+.
T Consensus 179 ~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHHhhcCceeEEeeecCcC
Confidence 22444456666666655543
No 274
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.12 Score=58.41 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=77.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhc---------------------CCCCEEEEEEcCCCCCHHHHHHHHHHHhccc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKER---------------------KLFDQVVFSEVSQTPNIKDIQKEIAEKLGLI 232 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (1344)
.+.+.++|+.|+|||++|+.++...--. .|-| ..++....... + -| .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~-~---------~g-~ 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEP-E---------NG-R 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccc-c---------cc-c
Confidence 4578899999999999999999875311 0111 22222110000 0 00 0
Q ss_pred cccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecCh-HHHHh-hCCCCcEE
Q 000701 233 LHEETVSRRASRLYERLK----EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDR-SVLLK-MGSAPPFL 304 (1344)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~-~v~~~-~~~~~~~~ 304 (1344)
....-..+.+..+.+.+. .+++-++|+|+++..+ .-..+...+.....+..+|++|.+. .+... ......+.
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~ 168 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMV 168 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhc
Confidence 000001222333333332 2455566778887663 1122222222112345566666654 33332 22346788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000701 305 IGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 305 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
+.+++.+++.+.+.+. +. ... . .. +..++|.|+.
T Consensus 169 ~~~~~~~~~~~~L~~~-~~---~~~--~--~~-l~~~~g~p~~ 202 (325)
T PRK08699 169 LPAPSHEEALAYLRER-GV---AEP--E--ER-LAFHSGAPLF 202 (325)
T ss_pred CCCCCHHHHHHHHHhc-CC---CcH--H--HH-HHHhCCChhh
Confidence 9999999998888654 21 111 1 11 3467898854
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.67 E-value=0.063 Score=57.74 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (1344)
...++.|+|++|+|||++|.+++...... -..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 35699999999999999999999877543 4678899887 5555544
No 276
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.65 E-value=0.069 Score=57.43 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
++..+|+|.|+.|+|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 556799999999999999999999887654
No 277
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.11 Score=53.48 Aligned_cols=95 Identities=20% Similarity=0.333 Sum_probs=57.9
Q ss_pred CcccccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 151 GYEAFESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
.+.++-|=.++++++.+.+. -+.++-|.++|++|.|||-+|+.|+++-... |-.++ .
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--firvi-----g--- 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--FIRVI-----G--- 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--EEeeh-----h---
Confidence 34445566777777777664 1456778999999999999999999876532 32222 1
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 218 IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
.++.++. +| .....+..+++-....|-+++.+|+++..
T Consensus 245 -selvqky---vg------egarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 245 -SELVQKY---VG------EGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred -HHHHHHH---hh------hhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 1122211 11 11122334454444467889999998644
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.017 Score=55.21 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERK 202 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~ 202 (1344)
-.|+|.|++|+||||+++.++...+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999988654
No 279
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.59 E-value=0.06 Score=67.06 Aligned_cols=170 Identities=15% Similarity=0.192 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHHHHHH---c---------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 153 EAFESRFSTLRDIRNALT---N---------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~---~---------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
..+.|.+..++++.+.+. . .-.+-|.|+|++|+|||++|+.++...... | +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------
Confidence 345666655555544432 1 113459999999999999999998876532 2 2222221
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc------------c----ccccCcCC--CCCCce
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN------------L----ETVGIPYG--DDHKGC 282 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~----~~l~~~l~--~~~~~~ 282 (1344)
+.... .+ . ....+..+++......+++|++|+++.... . ..+...+. ....+.
T Consensus 221 ~~~~~---~g-----~-~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FVEMF---VG-----V-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hHHhh---hc-----c-cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11100 01 0 111223334444446788999999876410 0 11111111 113345
Q ss_pred EEEEEecChHHHH-hh----CCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000701 283 KILLTSRDRSVLL-KM----GSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGL 344 (1344)
Q Consensus 283 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~ 344 (1344)
-||.||....... .. .-.+.+.+...+.++-.++++.+.......++. ....+++.+.|.
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 5666776554332 11 234678888899999999998887543221111 123466666654
No 280
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.12 Score=58.30 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
+.++|+|+|++|+||||++..++.....++ ..+..+...... ...+-++..++.++...........+....+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999998776332 234455554322 12233344444555443322223333344444432
Q ss_pred -CCeEEEEEeCCCC
Q 000701 252 -EKKILVVLDNLWK 264 (1344)
Q Consensus 252 -~~~~LlvlDdv~~ 264 (1344)
.+.=++++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1234778887654
No 281
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.58 E-value=0.073 Score=53.87 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
++.|+|++|+|||+++..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999988754 245677888765543
No 282
>PRK04296 thymidine kinase; Provisional
Probab=95.54 E-value=0.014 Score=60.42 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc---ccHHHHHHHHHHHHHc
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE---ETVSRRASRLYERLKE 251 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 251 (1344)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......++..++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887644 23344442 2222233344456666543322 112222222222 22
Q ss_pred CCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecChH
Q 000701 252 EKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRDRS 292 (1344)
Q Consensus 252 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~~~ 292 (1344)
++.-+||+|++.-. ++..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 45568999999643 2122222221 235778999998853
No 283
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.54 E-value=0.12 Score=61.97 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc-C-----CCCEEEEEEcCC-----CCCH------------HHHHHHHHHHh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER-K-----LFDQVVFSEVSQ-----TPNI------------KDIQKEIAEKL 229 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~-~-----~f~~~~wv~~~~-----~~~~------------~~~~~~i~~~l 229 (1344)
....|+|+|+-|+|||||.+.+....... . .--.+.|+.-.. ..++ +...+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 45689999999999999999997655322 0 000112221111 0011 23333344444
Q ss_pred cccccc-------ccHHHHHHHHHHHHHcCCeEEEEEeCCCCc------cccccccCcCCCCCCceEEEEEecChHHHHh
Q 000701 230 GLILHE-------ETVSRRASRLYERLKEEKKILVVLDNLWKC------LNLETVGIPYGDDHKGCKILLTSRDRSVLLK 296 (1344)
Q Consensus 230 ~~~~~~-------~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~ 296 (1344)
+-.... -+..+...-.+..+.-.++-+||||+--+. +.++.....| +|+ ||+.|.++.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHh
Confidence 322211 122333344444444578899999976554 3333322222 444 8888999887775
Q ss_pred hCCCCcEEcc
Q 000701 297 MGSAPPFLIG 306 (1344)
Q Consensus 297 ~~~~~~~~l~ 306 (1344)
.. ...+.++
T Consensus 502 va-~~i~~~~ 510 (530)
T COG0488 502 VA-TRIWLVE 510 (530)
T ss_pred hc-ceEEEEc
Confidence 44 3344444
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.53 E-value=0.087 Score=59.37 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCCEEEEEEcCCCCCHHHHHHHHHHHhccc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKE----RKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLI 232 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 232 (1344)
...++-|+|++|+|||+|+.+++-.... ...-..++|++....|+++.+.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3468889999999999999998754432 11224789999999999888754 56666543
No 285
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.49 E-value=0.19 Score=51.57 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCCcccccchHHHHHHHHHHHH----cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 149 STGYEAFESRFSTLRDIRNALT----NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
+.+...++|-+...+.|++--. .-..--|.+||.-|+||++|++.+.+....+ .-.. |.|.+
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrL--VEV~k---------- 121 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRL--VEVDK---------- 121 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeE--EEEcH----------
Confidence 3445668888888877775543 2334468999999999999999999988754 2222 22221
Q ss_pred HHHHhccccccccHHHHHHHHHHHHH-cCCeEEEEEeCCCCc---cccccccCcCCCC---CCceEEEEEecCh
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLK-EEKKILVVLDNLWKC---LNLETVGIPYGDD---HKGCKILLTSRDR 291 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~---~~~~~l~~~l~~~---~~~~~iivTtR~~ 291 (1344)
.+....-.+.+.++ ...||+|..||+.=. +.+..++..+..+ .+.-.++..|.++
T Consensus 122 ------------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ------------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 00111122333343 378999999998533 3455555555432 2333355555443
No 286
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.49 E-value=0.078 Score=57.68 Aligned_cols=90 Identities=30% Similarity=0.357 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc-------------c
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKER----KLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE-------------E 236 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 236 (1344)
..++=|+|++|+|||.|+.+++-..... ..-..++|++-...+..+.+. +|++..+..... .
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4588999999999999999988655422 123469999999999888775 466654332110 1
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000701 237 TVSRRASRLYERLKEEKKILVVLDNLWK 264 (1344)
Q Consensus 237 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 264 (1344)
.....+..+...+.+.+--|||+|.+..
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 1112222333333345666888888753
No 287
>PRK06921 hypothetical protein; Provisional
Probab=95.46 E-value=0.072 Score=58.29 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=45.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
....+.++|+.|+|||+||..+++....+. -..++|++. .+++..+...+ .......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 456899999999999999999999876431 244667664 23333332221 1111233333 3
Q ss_pred CeEEEEEeCC
Q 000701 253 KKILVVLDNL 262 (1344)
Q Consensus 253 ~~~LlvlDdv 262 (1344)
+-=|||+||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 4569999999
No 288
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.43 E-value=0.1 Score=56.46 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
...++.|.|++|+|||++|.+++.....+ -..++|++... +++++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 45699999999999999999988765322 35678888654 555555553
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.072 Score=61.12 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcC--CCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERK--LFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERL 249 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 249 (1344)
..++|+++|+.|+||||.+..++....... .-..+..++..... ...+.++..++.++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999999988765321 12345566655422 233336666776766543333333333333333
Q ss_pred HcCCeEEEEEeCCCCc
Q 000701 250 KEEKKILVVLDNLWKC 265 (1344)
Q Consensus 250 ~~~~~~LlvlDdv~~~ 265 (1344)
.+.-++++|.....
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 35568889988543
No 290
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.42 E-value=0.05 Score=55.85 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSE 211 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1344)
...+|+++|+.|+||||+|+.++...... +..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 45699999999999999999999988643 55555553
No 291
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.39 E-value=0.11 Score=55.76 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
...++.|.|++|+||||+|.+++.....+. ..+++++. ..+..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~--e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVST--QLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeC--CCCHHHHHHHH-HHhC
Confidence 345999999999999999988777653222 34566663 33556666665 3344
No 292
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.36 E-value=0.15 Score=57.42 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=59.4
Q ss_pred HHHHHHHHHcC----CCeEEEEEcCCCCcHH-HHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhcccccc
Q 000701 162 LRDIRNALTNA----NAGIIGVYGMGGIGKT-TLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHE 235 (1344)
Q Consensus 162 ~~~l~~~l~~~----~~~~i~I~G~~G~GKT-tLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 235 (1344)
...+..++.++ +.++|+++||.|+||| |||+.++.-... ..-..+..++...-. ...+-++..++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444444433 4789999999999997 677777665521 223456666664422 3455566777777776655
Q ss_pred ccHHHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000701 236 ETVSRRASRLYERLKEEKKILVVLDNLWK 264 (1344)
Q Consensus 236 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 264 (1344)
.............+. + .=+|.+|-+..
T Consensus 266 v~~~~el~~ai~~l~-~-~d~ILVDTaGr 292 (407)
T COG1419 266 VYSPKELAEAIEALR-D-CDVILVDTAGR 292 (407)
T ss_pred ecCHHHHHHHHHHhh-c-CCEEEEeCCCC
Confidence 444444444444443 3 34566676653
No 293
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.21 Score=51.29 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=100.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHc-------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 146 LQSSTGYEAFESRFSTLRDIRNALTN-------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 146 ~~~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
..|...+.++-|-++.+++|++++.- ..++-|..+|++|.|||-+|+..+.+-... | ..+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--F-----LKL 236 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--F-----LKL 236 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--H-----HHh
Confidence 34455566777889999999998750 235678999999999999999988765432 2 111
Q ss_pred CCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccc--c--------------ccccCcCC
Q 000701 213 SQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCLN--L--------------ETVGIPYG 276 (1344)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~--------------~~l~~~l~ 276 (1344)
.. +.- -++.+. +....+...+.-.++..+.++.+|+++.... + -++...+.
T Consensus 237 Ag---PQL------VQMfIG----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 237 AG---PQL------VQMFIG----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred cc---hHH------Hhhhhc----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 11 000 011100 0111222223333346788888998764410 0 01111122
Q ss_pred C--CCCceEEEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHhCCChHH
Q 000701 277 D--DHKGCKILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTAG--DDVEHRELNSTARNVAMACGGLPIA 347 (1344)
Q Consensus 277 ~--~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pla 347 (1344)
. .....+||.+|..-.+.. ...-.+.+++.--+++.-..+++-+.. ...++.+++++++.--..-|.--.|
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKA 383 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKA 383 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhee
Confidence 1 234678888876554443 222335566544444444455555553 2334455566554332222222245
Q ss_pred HHHHHHHHh
Q 000701 348 LTTIARALR 356 (1344)
Q Consensus 348 i~~~~~~l~ 356 (1344)
+.+=|++++
T Consensus 384 VcVEAGMiA 392 (424)
T KOG0652|consen 384 VCVEAGMIA 392 (424)
T ss_pred eehhhhHHH
Confidence 555566654
No 294
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.35 E-value=0.0084 Score=62.29 Aligned_cols=83 Identities=28% Similarity=0.379 Sum_probs=49.0
Q ss_pred ccCCCCcEEEcCCCCCCCccccccccccceeecccC--CCc-ccChhhhccCcccEEecccccccc---ccChhhhccCC
Q 000701 573 DLLVNLQTLSLDQSMLGDIAIIGKLKNLEILSMINS--DIV-KLPEAFGLLTKLRLLDLTDCFQLK---VIAPNVLSSLI 646 (1344)
Q Consensus 573 ~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~l~---~~~~~~l~~L~ 646 (1344)
-.+..|+.|.+.++.++.+..+-.|.+|++|.++.| .+. .++.-..++++|++|++++| +++ ++++ +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhc
Confidence 344555555566666666666666667777777666 322 34444445577777777776 332 3433 55666
Q ss_pred cCCEEEcccccc
Q 000701 647 RLEELYMRNCFV 658 (1344)
Q Consensus 647 ~L~~L~l~~~~~ 658 (1344)
+|..|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 666777766654
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.34 E-value=0.11 Score=59.02 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKL----FDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
...++-|+|++|+|||++|.+++........ =..++|++....++++.+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 3568899999999999999999976543211 14799999998888877654 444444
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.32 E-value=0.024 Score=66.56 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHHH------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 154 AFESRFSTLRDIRNALT------NANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
+++|.++.++++++.+. ..+.+++.++||+|+|||+||+.++.-.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 47899999999999983 456689999999999999999999987754
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.11 Score=58.34 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC-HHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN-IKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
+.++++|+|+.|+||||++..++.....+. ..+.+++...... ..+-++..++.++...........+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999998765432 3566777654332 3445566666666543322223333444444431
Q ss_pred -CCeEEEEEeCCCC
Q 000701 252 -EKKILVVLDNLWK 264 (1344)
Q Consensus 252 -~~~~LlvlDdv~~ 264 (1344)
+..=++++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788888754
No 298
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.021 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
+.|.+.|++|+||||+|++.++.++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999988754
No 299
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.27 E-value=0.075 Score=57.56 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=55.9
Q ss_pred CcccccchHHHHH---HHHHHHHcC--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-----CHHH
Q 000701 151 GYEAFESRFSTLR---DIRNALTNA--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-----NIKD 220 (1344)
Q Consensus 151 ~~~~~~gR~~~~~---~l~~~l~~~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~ 220 (1344)
..+.|||..+..+ -+++++.++ ..+.|.|+|++|.|||+||..+++.+...-+|... +.++.+ ..+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i---sgsEiYS~E~kKTE~ 113 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI---SGSEIYSLEVKKTEA 113 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee---ccceeeeecccHHHH
Confidence 3567899876544 467777754 35799999999999999999999999877677432 223323 3455
Q ss_pred HHHHHHHHhcccc
Q 000701 221 IQKEIAEKLGLIL 233 (1344)
Q Consensus 221 ~~~~i~~~l~~~~ 233 (1344)
+.+.+-+++|...
T Consensus 114 L~qa~RraIGvri 126 (450)
T COG1224 114 LTQALRRAIGVRI 126 (450)
T ss_pred HHHHHHHhhceEe
Confidence 6666666666543
No 300
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.27 E-value=0.14 Score=56.64 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc------cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH------EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 246 (1344)
..+++-|+|+.|+||||||..+....... -..++|+.....+++.. ++.+|.+.+ ++..++.+..+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 35699999999999999999999877544 45688999988777644 344554332 233343333333
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000701 247 ERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~ 265 (1344)
..+..+.--++|+|.|...
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 3333455568999998765
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.23 E-value=0.046 Score=57.45 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHH
Q 000701 161 TLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDI 221 (1344)
Q Consensus 161 ~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 221 (1344)
+..++++.+. .++..+|+|+|++|+|||||...+....+.+.+--.++-|.-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 3445555554 356789999999999999999999999887665566777777777764443
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.23 E-value=0.091 Score=59.03 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER----KLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
...++.|+|++|+|||+++.+++...... ..-..++|++....+..+.+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 35789999999999999999988643321 11236799999888887764 445555543
No 303
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.084 Score=58.72 Aligned_cols=97 Identities=27% Similarity=0.396 Sum_probs=63.1
Q ss_pred HHHHHHHHcC--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccccc--ccH
Q 000701 163 RDIRNALTNA--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHE--ETV 238 (1344)
Q Consensus 163 ~~l~~~l~~~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 238 (1344)
.++-+.|..+ ...+|.|-|.+|+|||||..+++.+...+. .+.+|+-.+. ..++ +-.++.++...+. .-.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEeh
Confidence 3344444432 346899999999999999999999998654 6777765443 3332 3345566643322 112
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 239 SRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 239 ~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
+..++.+.+.+.+.++-++|+|.+.+.
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEecccee
Confidence 233455666676678899999998643
No 304
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.22 E-value=0.041 Score=58.50 Aligned_cols=61 Identities=33% Similarity=0.426 Sum_probs=48.1
Q ss_pred HHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHH
Q 000701 163 RDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQK 223 (1344)
Q Consensus 163 ~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 223 (1344)
.+++..+. .++..+|+|+|.+|+|||||.-.+...+..+.+--.|+-|..+.+++--.++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 44555554 56778999999999999999999999998887777788888888876544443
No 305
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.17 E-value=0.48 Score=49.77 Aligned_cols=227 Identities=11% Similarity=0.135 Sum_probs=121.8
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCCEEEEEEcCCC----------C---
Q 000701 154 AFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKE----RKLFDQVVFSEVSQT----------P--- 216 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~----------~--- 216 (1344)
...++++....+......++.+-..++|+.|.||-|.+..+.++.-- +-.-+..-|.+.+.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35666676667766665667889999999999999988888776521 111233445444332 0
Q ss_pred --------CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeE-EEEEeCCCCc--cccccccCcCCCCCCceEEE
Q 000701 217 --------NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKI-LVVLDNLWKC--LNLETVGIPYGDDHKGCKIL 285 (1344)
Q Consensus 217 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii 285 (1344)
.-+.+..+++++++.... +. ...++.| ++|+-.+++. ++-.++..-...-...+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q----------ie--~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ----------IE--TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc----------hh--hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 123344455554432111 00 0113344 5555555544 22111211111113456666
Q ss_pred EEecC-hHHHHhh-CCCCcEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhCCChHHHHHHHHHHh--cC--
Q 000701 286 LTSRD-RSVLLKM-GSAPPFLIGVLNEEEAWRLFKMTAGDD-VEHRELNSTARNVAMACGGLPIALTTIARALR--NR-- 358 (1344)
Q Consensus 286 vTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~--~~-- 358 (1344)
+...+ ..+...+ .-.-.+++...+++|....+++.+... ..-+ .+++.+|+++++|.---...+-..++ +.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 54332 1122211 122357888999999999999988432 2222 67899999999998543333333333 11
Q ss_pred -------CHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHhcC
Q 000701 359 -------SMREWKNALQQLRAPSSVNFEGISAEAYSAIDLSIKYL 396 (1344)
Q Consensus 359 -------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L 396 (1344)
..-+|+-++.++......+ ...+.+..+-..=|+-|
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 2357988877654332111 12345566655556544
No 306
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.22 Score=54.74 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHHHH--------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 155 FESRFSTLRDIRNALT--------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~--------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
+-|-+..++++.+.+. -...+-|.++||+|.|||.+|+.++.+.... |-. |.++...+ .
T Consensus 94 IggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~--fIn---v~~s~lt~--K 166 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN--FIN---VSVSNLTS--K 166 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC--cce---eeccccch--h
Confidence 3455566666665543 1245678999999999999999999987643 532 22332222 1
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--------------------ccccccCcCCCCCC
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--------------------NLETVGIPYGDDHK 280 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------------------~~~~l~~~l~~~~~ 280 (1344)
.+ | .....+..++-...+=.+..+.+|.+++.- .|+.+. ...
T Consensus 167 Wf-------g------E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-----s~~ 228 (386)
T KOG0737|consen 167 WF-------G------EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-----SKD 228 (386)
T ss_pred hH-------H------HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-----CCC
Confidence 11 0 001111111111112355666777765331 255332 124
Q ss_pred ceEEEE---EecChHHHHh--hCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000701 281 GCKILL---TSRDRSVLLK--MGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLP 345 (1344)
Q Consensus 281 ~~~iiv---TtR~~~v~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~P 345 (1344)
+.+|+| |-|...+... -.-.+.++++--+.++-.++++-........++++ ..+|++.+.|.-
T Consensus 229 ~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD--~~~iA~~t~GyS 296 (386)
T KOG0737|consen 229 SERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVD--LDEIAQMTEGYS 296 (386)
T ss_pred CceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccC--HHHHHHhcCCCc
Confidence 446666 4454433331 12234566665556666677766664332222222 567788888764
No 307
>PTZ00035 Rad51 protein; Provisional
Probab=95.14 E-value=0.14 Score=57.97 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKE----RKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
...++.|+|++|+|||+++.+++-.... ...-..++|++....++++.+ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3568999999999999999998865431 112245789998887877774 444555543
No 308
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.14 E-value=0.098 Score=59.07 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER----KLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
...++-|+|++|+|||++|..++-..... ..-..++|++....+.++.+ .+|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 35688899999999999999888544321 11236999999999988876 455666654
No 309
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.081 Score=60.43 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
..+++++|++|+||||++.+++........+ .+..++..... .....++..++.++...... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999999765332222 23334332211 12334444555555533221 1123344444333
Q ss_pred CeEEEEEeCC
Q 000701 253 KKILVVLDNL 262 (1344)
Q Consensus 253 ~~~LlvlDdv 262 (1344)
..=++|+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 4446888954
No 310
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.11 E-value=0.12 Score=68.74 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
.++-|.++|++|+|||.||+.+|.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567899999999999999999988754
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.09 E-value=0.16 Score=59.29 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhcccccc----ccHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGLILHE----ETVSRRASRLYE 247 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 247 (1344)
.+.+|.++|++|+||||.|..++.....+. + .+..+++... ....+.++.++..++..... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998887542 2 3444544332 12345566667776654322 122233333444
Q ss_pred HHHcCCeEEEEEeCCC
Q 000701 248 RLKEEKKILVVLDNLW 263 (1344)
Q Consensus 248 ~l~~~~~~LlvlDdv~ 263 (1344)
+.. .. -++|+|...
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 443 22 568888764
No 312
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.5 Score=52.38 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHH--------hhcCCCCEEEEEEc-CCCCCHHHHHHHHHHHhcc
Q 000701 162 LRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQA--------KERKLFDQVVFSEV-SQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 162 ~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 231 (1344)
++.+...+..++. ++..++|..|+||+++|..+++.. ....+-+.+.++.. +.....+++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4556666665554 566799999999999999999886 22222223334332 2223343433 23333221
Q ss_pred ccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEe-cChHHHHh-hCCCCcEEccC
Q 000701 232 ILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTS-RDRSVLLK-MGSAPPFLIGV 307 (1344)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTt-R~~~v~~~-~~~~~~~~l~~ 307 (1344)
.. ...+++-++|+|+++... +...+...+....+++.+|++| ....+... ......+++.+
T Consensus 84 ~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 11 002578889999987663 3334444444444566666555 44444332 33457899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC
Q 000701 308 LNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGG 343 (1344)
Q Consensus 308 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 343 (1344)
+++++..+.+... + .. ++.+..++...+|
T Consensus 149 l~~~~l~~~l~~~-~--~~----~~~a~~~a~~~~~ 177 (299)
T PRK07132 149 PDQQKILAKLLSK-N--KE----KEYNWFYAYIFSN 177 (299)
T ss_pred CCHHHHHHHHHHc-C--CC----hhHHHHHHHHcCC
Confidence 9999998877664 2 11 2335566666666
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.1 Score=61.15 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC-HHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN-IKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
.++++++|++|+||||++..++........-..+..++...... ..+.++..++.++..................+ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--C
Confidence 46899999999999999999887765111124566776644221 22334444555554432222222222333333 2
Q ss_pred CeEEEEEeCCC
Q 000701 253 KKILVVLDNLW 263 (1344)
Q Consensus 253 ~~~LlvlDdv~ 263 (1344)
..=++++|...
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 45678889764
No 314
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.05 E-value=0.14 Score=54.78 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
...++.|.|++|+|||++|.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999999877532 34678887655543
No 315
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.04 E-value=0.11 Score=53.26 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccc----cccHHHHHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILH----EETVSRRASRLYERLK 250 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~ 250 (1344)
++.++|++|+||||+++.++....... ..++.+...... ...+.+...+...+.... ..+..+..........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998876441 234455543321 233334444444443211 1122222323333333
Q ss_pred cCCeEEEEEeCCCC
Q 000701 251 EEKKILVVLDNLWK 264 (1344)
Q Consensus 251 ~~~~~LlvlDdv~~ 264 (1344)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 23443566887654
No 316
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.02 E-value=0.1 Score=57.28 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP 216 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 216 (1344)
..+-+|+|.|+.|+||||+|+.+.........-..+..++...-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 456799999999999999998887665421111234455544433
No 317
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.00 E-value=0.12 Score=56.27 Aligned_cols=118 Identities=18% Similarity=0.093 Sum_probs=65.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccc--------ccccHHHHH
Q 000701 171 NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLIL--------HEETVSRRA 242 (1344)
Q Consensus 171 ~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 242 (1344)
.++..-++|+|+.|.||||+.+.++..... ..+.+++.-.+.... +-..+++.....-. +..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHH
Confidence 344578999999999999999999976642 223333321111101 11123332221110 000111112
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHH
Q 000701 243 SRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 243 ~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
..+...+....+-++++|++...+.+..+...+. .|..||+||....+..
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 2334444346788999999987665655544432 4677999998766543
No 318
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.95 E-value=0.049 Score=53.34 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=45.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEE
Q 000701 177 IGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEKKIL 256 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 256 (1344)
|.++|++|+|||++|+.+++... ....-+.++...+.+++....--.-+... -.... +.+.. .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~--~~~~~----l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFE--FKDGP----LVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTC--EEE-C----CCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccc--ccccc----ccccc--cceeE
Confidence 67999999999999999999883 23455778888888776543321100000 00000 00011 27889
Q ss_pred EEEeCCCCc
Q 000701 257 VVLDNLWKC 265 (1344)
Q Consensus 257 lvlDdv~~~ 265 (1344)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999998744
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.90 E-value=0.11 Score=59.55 Aligned_cols=86 Identities=26% Similarity=0.353 Sum_probs=52.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEE--TVSRRASRLYERLKE 251 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 251 (1344)
..++.|.|++|+|||||+.+++...... -..++|++..+. ..++ ..-++.++...+.. .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999999877643 346788876543 3333 22344555432211 011123334444444
Q ss_pred CCeEEEEEeCCCC
Q 000701 252 EKKILVVLDNLWK 264 (1344)
Q Consensus 252 ~~~~LlvlDdv~~ 264 (1344)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5666788888753
No 320
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.07 Score=51.13 Aligned_cols=45 Identities=29% Similarity=0.491 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccc
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLIL 233 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (1344)
+|+|.|++|+||||+|+.++....-. .+ +.-.+++++++..|...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987633 11 22367788888887654
No 321
>PRK10867 signal recognition particle protein; Provisional
Probab=94.88 E-value=0.15 Score=59.42 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
.+.+|.++|++|+||||.|..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46799999999999999999998877644
No 322
>PRK06547 hypothetical protein; Provisional
Probab=94.85 E-value=0.042 Score=55.56 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=28.6
Q ss_pred HHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 165 IRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 165 l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+...+......+|+|.|++|+||||+|+.++....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445566778999999999999999999998754
No 323
>PRK05439 pantothenate kinase; Provisional
Probab=94.85 E-value=0.17 Score=55.97 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc--cccccccHHHHHHHHHHHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG--LILHEETVSRRASRLYERL 249 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~l~~~l 249 (1344)
+.+-+|+|.|.+|+||||+|+.+.........-..+.-++...-....+.+.+ ..+. ...++.-+.+........+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHHH
Confidence 44568999999999999999999886643211123444554443333322221 1111 1112223344455566666
Q ss_pred HcCCe
Q 000701 250 KEEKK 254 (1344)
Q Consensus 250 ~~~~~ 254 (1344)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 65554
No 324
>PHA02244 ATPase-like protein
Probab=94.79 E-value=0.13 Score=57.59 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 162 LRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 162 ~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
...+..++..+ .-|.|+|++|+|||++|+.++....
T Consensus 109 ~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455555432 3477899999999999999998764
No 325
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.79 E-value=0.18 Score=58.79 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=49.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC--HHHHHHHHHHHhccccc----cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN--IKDIQKEIAEKLGLILH----EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 246 (1344)
++.++.++|++|+||||.|..++.....+..+ .+.-+++.. +. ..+.++..+...+.+.. ..++.+.+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~-~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDL-YRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccc-cchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999999999886532222 344444432 22 23334445555554321 122333333344
Q ss_pred HHHHcCCeEEEEEeCCC
Q 000701 247 ERLKEEKKILVVLDNLW 263 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~ 263 (1344)
+.......=++|+|-..
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44432233377777765
No 326
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.78 E-value=0.14 Score=53.49 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC--------CEEEEEEcCCCCCHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLF--------DQVVFSEVSQTPNIKDIQKEIA 226 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~ 226 (1344)
..++.|.|++|+|||+++.+++........| ..++|++.... ..++.+.+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 3589999999999999999999887754333 35788877665 334444443
No 327
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.77 E-value=0.13 Score=54.65 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP 216 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 216 (1344)
+|+|.|+.|+||||+|+.+.........=..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234555554443
No 328
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.74 E-value=0.2 Score=56.81 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERK----LFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
...++-|+|++|+|||+++.+++....... .-..++|++....++++.+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 356889999999999999999987754211 11379999999888887764 4455544
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.70 E-value=0.23 Score=54.57 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH--HHHHHHHHHHhccccc----cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI--KDIQKEIAEKLGLILH----EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 246 (1344)
+.++|+++|++|+||||.+..++...... -..+.++.... +.. .+-+...++..+.... ..+....+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45799999999999999999999877643 23566666543 322 2334445555553321 111222222222
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000701 247 ERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~ 265 (1344)
+....+..=++++|-....
T Consensus 148 ~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHCCCCEEEEeCCCCC
Confidence 2222244557888876543
No 330
>PRK04328 hypothetical protein; Provisional
Probab=94.70 E-value=0.15 Score=55.48 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
...++.|.|++|+|||++|.+++.....+ -..++|++..+ +++++.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHHH-HHHHcC
Confidence 45699999999999999999988765322 34578888765 3444333 344454
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=94.67 E-value=0.35 Score=54.52 Aligned_cols=90 Identities=26% Similarity=0.255 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC--HHHHHHHHHHHhcccccc----ccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN--IKDIQKEIAEKLGLILHE----ETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 246 (1344)
++.+|+++|+.|+||||.+..++...... .+ .++.+.. +.+. ..+.++..+..++..... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999998877643 23 3444443 2232 333455666666653321 12222222222
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000701 247 ERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~ 265 (1344)
+.......=++++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222338899988654
No 332
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.66 E-value=0.13 Score=53.80 Aligned_cols=87 Identities=24% Similarity=0.461 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhcc-------ccccccHHH----
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGL-------ILHEETVSR---- 240 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 240 (1344)
+...+.|.|.+|+|||+|+..+++... -+.++++-+++. ....++.+++...-.. ....+....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 446899999999999999999998874 345577777655 3456666666432111 111111111
Q ss_pred --HHHHHHHHHH-cCCeEEEEEeCCC
Q 000701 241 --RASRLYERLK-EEKKILVVLDNLW 263 (1344)
Q Consensus 241 --~~~~l~~~l~-~~~~~LlvlDdv~ 263 (1344)
..-.+.+++. ++++.|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 1122334443 5899999999974
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.66 E-value=0.19 Score=52.27 Aligned_cols=61 Identities=28% Similarity=0.315 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE-------EEcCCCCCHHHH--HHHHHHHhcccc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVF-------SEVSQTPNIKDI--QKEIAEKLGLIL 233 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-------v~~~~~~~~~~~--~~~i~~~l~~~~ 233 (1344)
++..|.++||+|.||||..+..+.....++.-..++- ++.....++++. .++++++-+...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4567899999999999999999998876644333332 122223344443 345666655433
No 334
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.65 E-value=0.019 Score=59.81 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=33.8
Q ss_pred hcCCcceEEEeCCCC--CC-cCCcccccCCCCcEEEcCCCCCCCc---cccccccccceeecccCCCc
Q 000701 550 KEMRMLRVVGFSKMQ--LS-SLPSSMDLLVNLQTLSLDQSMLGDI---AIIGKLKNLEILSMINSDIV 611 (1344)
Q Consensus 550 ~~l~~Lr~L~L~~~~--i~-~lp~~i~~L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~l~~~~l~ 611 (1344)
..+++|+.|+++.|. +. .++-....+++|++|+|++|++..+ ..+.++.+|..|++.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 455666666666663 22 2333344456666666666655443 44555555556666555443
No 335
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.63 E-value=0.17 Score=49.79 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE---EEcCCCCCHHHHHHHHHHHh-----ccc--cccccHHH---H
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVF---SEVSQTPNIKDIQKEIAEKL-----GLI--LHEETVSR---R 241 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~~i~~~l-----~~~--~~~~~~~~---~ 241 (1344)
+.|-|++..|.||||+|.-.+-+..... + .+.+ +.-........+++.+- .+ +.. .......+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999999887765432 2 2333 33322333444443330 01 100 00011111 1
Q ss_pred H----HHHHHHHHcCCeEEEEEeCCCCcc-----ccccccCcCCCCCCceEEEEEecChH
Q 000701 242 A----SRLYERLKEEKKILVVLDNLWKCL-----NLETVGIPYGDDHKGCKILLTSRDRS 292 (1344)
Q Consensus 242 ~----~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~~~~iivTtR~~~ 292 (1344)
+ ....+.+..+.-=|+|||++-..- ..+.+...+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1 222233334566799999985442 23334444444556778999999854
No 336
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.63 E-value=0.28 Score=55.70 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQ 197 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~ 197 (1344)
+.++|+...++++.+.+. .....-|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458899888888888876 334456889999999999999988753
No 337
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.61 E-value=0.047 Score=63.42 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC
Q 000701 153 EAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD 205 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~ 205 (1344)
..++||++.++.+...+.. ..-|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 3589999999999888763 35788999999999999999998765333443
No 338
>PF13245 AAA_19: Part of AAA domain
Probab=94.59 E-value=0.1 Score=44.35 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLV-KAVARQA 198 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa-~~v~~~~ 198 (1344)
+.+++.|.|++|.|||+++ ..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678889999999999544 4444444
No 339
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.55 E-value=0.15 Score=55.29 Aligned_cols=141 Identities=22% Similarity=0.205 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCC----------CEEEEEEcCCCCC-HHHHHHHHHHHhccccc----------
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLF----------DQVVFSEVSQTPN-IKDIQKEIAEKLGLILH---------- 234 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f----------~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---------- 234 (1344)
+..|+|++|+|||+||.+++........| ..|+++......+ +.+=+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56899999999999999999875532211 2355555544322 22223333333321000
Q ss_pred -------c---ccHHHHHHHHHHHHHcCCeEEEEEeCCCCc--------cccccccCcCCC--CCCceEEEEEecChHHH
Q 000701 235 -------E---ETVSRRASRLYERLKEEKKILVVLDNLWKC--------LNLETVGIPYGD--DHKGCKILLTSRDRSVL 294 (1344)
Q Consensus 235 -------~---~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--------~~~~~l~~~l~~--~~~~~~iivTtR~~~v~ 294 (1344)
. ......+..+.+.+...+.-++|+|-+... .....+...+.. ...++.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 012233444555554456779999975321 112222211111 12466777777644211
Q ss_pred H--------------hh-CCCCcEEccCCCHHHHHHH
Q 000701 295 L--------------KM-GSAPPFLIGVLNEEEAWRL 316 (1344)
Q Consensus 295 ~--------------~~-~~~~~~~l~~L~~~e~~~l 316 (1344)
. .. .....+.+.+++++|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 01 1223577888888887773
No 340
>PRK07667 uridine kinase; Provisional
Probab=94.51 E-value=0.067 Score=55.66 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=29.8
Q ss_pred HHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 163 RDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 163 ~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
..+.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555555 344579999999999999999999998764
No 341
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.47 E-value=0.22 Score=53.68 Aligned_cols=94 Identities=24% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHh--hcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHH--
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAK--ERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVS-- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-- 239 (1344)
.+...++|.|.+|+|||+|+..++++.. .+..-+.++++-+++.. ...++..++...=... ...+...
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 4556889999999999999999987764 12234678888887754 4666666665431111 1111111
Q ss_pred ----HHHHHHHHHHH-c-CCeEEEEEeCCCCc
Q 000701 240 ----RRASRLYERLK-E-EKKILVVLDNLWKC 265 (1344)
Q Consensus 240 ----~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 265 (1344)
.....+.+++. + +++.|+++||+-..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12234555655 3 79999999998543
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.47 E-value=0.16 Score=52.82 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
++.|.|++|+|||++|.+++...... =..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999998876532 24577887654 34454443
No 343
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.18 Score=50.14 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
..+++|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998766
No 344
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.38 E-value=0.28 Score=53.07 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
...++.|+|++|+|||++|.+++.....+ =..++|++..+. ++++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 35689999999999999999997654322 346888888653 45555543
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.37 E-value=0.052 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQ 197 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~ 197 (1344)
.++++|+|+-|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999999843
No 346
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.23 Score=59.41 Aligned_cols=200 Identities=18% Similarity=0.235 Sum_probs=105.0
Q ss_pred ccccchHHHHHHHH---HHHHcCC---------CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHH
Q 000701 153 EAFESRFSTLRDIR---NALTNAN---------AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKD 220 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~---~~l~~~~---------~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 220 (1344)
.++.|.++.++++. +.|.+++ ++-|.++|++|.|||.||+.++....+- | .+.|...-++
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FVe- 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFVE- 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhhh-
Confidence 45677776665555 4454322 3568999999999999999999887754 2 2222211111
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------cc----ccccCcCCC--CCCce
Q 000701 221 IQKEIAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL------------NL----ETVGIPYGD--DHKGC 282 (1344)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~~----~~l~~~l~~--~~~~~ 282 (1344)
+.-.+ ...++..+++..++.-++++++|.++... .+ .++...... .+.|.
T Consensus 222 ----mfVGv--------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 222 ----MFVGV--------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred ----hhcCC--------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 11111 12334455555555678999999886541 11 122211211 12344
Q ss_pred EEEEEecChHHHH-----hhCCCCcEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH--HHHH--HH
Q 000701 283 KILLTSRDRSVLL-----KMGSAPPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIA--LTTI--AR 353 (1344)
Q Consensus 283 ~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla--i~~~--~~ 353 (1344)
.|+-.|...+|.. ..+-.+.+.++.-+-..-.++++-++....-.++.. ...|++.+-|.-.| .+++ |+
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd--l~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD--LKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC--HHHHhhhCCCcccchHhhhHHHHH
Confidence 4555555444443 112335666777776777888887664222111111 22367777665432 2222 44
Q ss_pred HHh---cC---CHHHHHHHHHHhcCCC
Q 000701 354 ALR---NR---SMREWKNALQQLRAPS 374 (1344)
Q Consensus 354 ~l~---~~---~~~~w~~~l~~l~~~~ 374 (1344)
++. ++ +..+...+.+++....
T Consensus 368 l~aar~n~~~i~~~~i~ea~drv~~G~ 394 (596)
T COG0465 368 LLAARRNKKEITMRDIEEAIDRVIAGP 394 (596)
T ss_pred HHHHHhcCeeEeccchHHHHHHHhcCc
Confidence 443 22 4555666666654443
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.36 E-value=0.08 Score=51.86 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSE 211 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1344)
..+|.|+|.+|+||||||+.+...+... -..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 4689999999999999999999999865 34455554
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.36 E-value=0.11 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988663
No 349
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.35 E-value=0.24 Score=61.01 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=39.1
Q ss_pred CcccccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 151 GYEAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
....++|+...++++.+.+. ......|.|+|..|+|||++|+.+.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34578999999988888876 3344567899999999999999998754
No 350
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.29 Score=53.11 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHH-hccc--cccccHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEK-LGLI--LHEETVSRRASRLYERL 249 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~--~~~~~~~~~~~~l~~~l 249 (1344)
..+++=|+|+.|.||||+|.+++-..... -..++|++.-..++++.+. +++.. +..- ....+.+... .+.+.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~-~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQL-EIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHH-HHHHHH
Confidence 45688999999999999999998776643 3478999999999988763 33333 2110 0111222222 222222
Q ss_pred H---cCCeEEEEEeCCCC
Q 000701 250 K---EEKKILVVLDNLWK 264 (1344)
Q Consensus 250 ~---~~~~~LlvlDdv~~ 264 (1344)
. .++--|+|+|.+..
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 2 12356888898854
No 351
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.32 E-value=0.096 Score=48.64 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHHH----c---CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 154 AFESRFSTLRDIRNALT----N---ANAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~----~---~~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
.++|..-..+.+++++. + .++=|++.+|++|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46676666666666654 2 334488999999999999999999874
No 352
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.31 E-value=0.2 Score=58.56 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=60.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhcc-------ccccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGL-------ILHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 239 (1344)
.+...++|.|.+|+|||||+..++...... +-+.++++-+++.. .+.++...+...-.. ...++...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 455789999999999999999999877643 46777887776544 456666666543211 01111111
Q ss_pred --HHHHHHHHHHH-c-CCeEEEEEeCCCC
Q 000701 240 --RRASRLYERLK-E-EKKILVVLDNLWK 264 (1344)
Q Consensus 240 --~~~~~l~~~l~-~-~~~~LlvlDdv~~ 264 (1344)
..+..+.+++. + ++++|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12334555654 3 7999999999854
No 353
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.30 E-value=0.08 Score=51.04 Aligned_cols=105 Identities=19% Similarity=0.352 Sum_probs=45.9
Q ss_pred ccHHHHhcCCcceEEEeCCCCCCcCC-cccccCCCCcEEEcCCCCCCCc--cccccccccceeecccCCCcccC-hhhhc
Q 000701 544 ISKSFFKEMRMLRVVGFSKMQLSSLP-SSMDLLVNLQTLSLDQSMLGDI--AIIGKLKNLEILSMINSDIVKLP-EAFGL 619 (1344)
Q Consensus 544 l~~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~ 619 (1344)
++...|.+++.|+.+.+.. .+..++ ..|.++.+|+.+.+..+ +..+ ..+.++.+|+.+.+.. .+..++ ..+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4445556666666666653 344443 33555556666666553 4444 4455555666666654 333333 33455
Q ss_pred cCcccEEeccccccccccChhhhccCCcCCEEEcc
Q 000701 620 LTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMR 654 (1344)
Q Consensus 620 L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 654 (1344)
+++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 666666666442 444555445555 66665544
No 354
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.017 Score=35.40 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=15.9
Q ss_pred cceEEEeCCCCCCcCCcccccC
Q 000701 554 MLRVVGFSKMQLSSLPSSMDLL 575 (1344)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~i~~L 575 (1344)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888888887766543
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.27 E-value=0.13 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998875
No 356
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.24 E-value=0.081 Score=64.78 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred CCcccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh
Q 000701 150 TGYEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL 229 (1344)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 229 (1344)
.-.+.++|+++.++.|..++... +.+.++|++|+||||+|+.+++.... ..++..+|... ...+...+++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 33456889999888888877644 57999999999999999999987532 33577888766 4457778888887766
Q ss_pred cc
Q 000701 230 GL 231 (1344)
Q Consensus 230 ~~ 231 (1344)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 64
No 357
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.22 E-value=0.041 Score=53.07 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000701 177 IGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 358
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.21 E-value=0.27 Score=56.87 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
...+|+++|+.|+||||++..++.........+.+.++..... ....+-+...++.++..................+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l-- 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL-- 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh--
Confidence 3479999999999999999988876433222334444443321 2233345556666665543322222222333333
Q ss_pred CCeEEEEEeCCC
Q 000701 252 EKKILVVLDNLW 263 (1344)
Q Consensus 252 ~~~~LlvlDdv~ 263 (1344)
...-++++|...
T Consensus 268 ~~~d~VLIDTaG 279 (420)
T PRK14721 268 RGKHMVLIDTVG 279 (420)
T ss_pred cCCCEEEecCCC
Confidence 234556777653
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.20 E-value=0.044 Score=45.72 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+|+|.|..|+||||+|+.+....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 360
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.19 E-value=0.12 Score=60.12 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHHH-------cC---------CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 153 EAFESRFSTLRDIRNALT-------NA---------NAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~~---------~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..++|.+..++.+...+. .. ..+.+.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 357999998888765552 10 125689999999999999999997664
No 361
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.18 E-value=0.046 Score=57.08 Aligned_cols=26 Identities=50% Similarity=0.714 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988743
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.16 E-value=0.12 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=49.1
Q ss_pred ccccchHHHHHHHHHHHHcC--------------CCeEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCCEEEEEEc-CCCC
Q 000701 153 EAFESRFSTLRDIRNALTNA--------------NAGIIGVYGMGGIGKTTLVKAVARQAKERK-LFDQVVFSEV-SQTP 216 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~--------------~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~~-~~~~ 216 (1344)
..++|.++.++.+.-++... ..+-|.++|++|+|||++|+.++....... ..+...+... ....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45889998888887666521 236789999999999999999999876331 0122212221 2233
Q ss_pred CHHHHHHHHHHH
Q 000701 217 NIKDIQKEIAEK 228 (1344)
Q Consensus 217 ~~~~~~~~i~~~ 228 (1344)
+.+.+++.+...
T Consensus 92 dvE~i~r~l~e~ 103 (441)
T TIGR00390 92 DVESMVRDLTDA 103 (441)
T ss_pred CHHHHHHHHHHH
Confidence 566666666544
No 363
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.16 E-value=0.18 Score=50.80 Aligned_cols=82 Identities=21% Similarity=0.153 Sum_probs=46.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC-Ce
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE-KK 254 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~ 254 (1344)
++.|.|.+|+|||++|.+++... ...++++.-.+.++.+ +.+.|.+--......-...+....+.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 36799999999999999998652 2357777777766653 44444432221111111112222333333221 33
Q ss_pred EEEEEeCCC
Q 000701 255 ILVVLDNLW 263 (1344)
Q Consensus 255 ~LlvlDdv~ 263 (1344)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 378999863
No 364
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.14 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
...+++|+|+.|.|||||.+.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456999999999999999999987543
No 365
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.14 E-value=0.13 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
...+++|.|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.10 E-value=0.17 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVAR 196 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~ 196 (1344)
...+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999998863
No 367
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.10 E-value=0.26 Score=53.97 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
...++.|.|++|+|||++|.+++.....+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34689999999999999999998765432 24577888764
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.07 E-value=0.22 Score=57.65 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
.+.+|.++|+.|+||||.|..++...+.+. + .+..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 457999999999999999999998776432 2 3445544
No 369
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.07 E-value=0.019 Score=35.26 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=11.3
Q ss_pred ccceeecccCCCcccChhhhc
Q 000701 599 NLEILSMINSDIVKLPEAFGL 619 (1344)
Q Consensus 599 ~L~~L~l~~~~l~~lp~~i~~ 619 (1344)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355555555555555554443
No 370
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.82 Score=50.06 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCC-eEEEEEcCCCCcHHHHHHHHHHHHhhc------------CCCCEEEEEE-cCCC--CCHHHHHHH
Q 000701 161 TLRDIRNALTNANA-GIIGVYGMGGIGKTTLVKAVARQAKER------------KLFDQVVFSE-VSQT--PNIKDIQKE 224 (1344)
Q Consensus 161 ~~~~l~~~l~~~~~-~~i~I~G~~G~GKTtLa~~v~~~~~~~------------~~f~~~~wv~-~~~~--~~~~~~~~~ 224 (1344)
.-+.|...+..++. +...++|+.|+||+++|..++...--. .|-| +.|+. .... ..+++
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~~~I~idq---- 79 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKGRLHSIET---- 79 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCCCcCcHHH----
Confidence 34567777776554 577899999999999999998765321 1222 22221 1110 12222
Q ss_pred HHHHhccccccccHHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cccccccCcCCCCCCceEEEEEecC-hHHHHh-
Q 000701 225 IAEKLGLILHEETVSRRASRLYERLK----EEKKILVVLDNLWKC--LNLETVGIPYGDDHKGCKILLTSRD-RSVLLK- 296 (1344)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iivTtR~-~~v~~~- 296 (1344)
+..+.+.+. .+++-++|+|+++.. ++...+...+-.-.+++.+|++|.+ ..+...
T Consensus 80 -----------------iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 80 -----------------PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred -----------------HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 222333332 366778899999866 4555554444444455655555544 444332
Q ss_pred hCCCCcEEccCC
Q 000701 297 MGSAPPFLIGVL 308 (1344)
Q Consensus 297 ~~~~~~~~l~~L 308 (1344)
.+-...+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 222345555544
No 371
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.2 Score=62.62 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred cccchHHHHHHHHHHHHc------C--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 154 AFESRFSTLRDIRNALTN------A--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~------~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
.++|.++.+..+.+++.. + ......+.|+.|+|||.||+.++...- +..+..+-++.++ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhh------hhh-h
Confidence 467888888888888862 2 345788999999999999999998773 2233444444433 222 4
Q ss_pred HHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCcc
Q 000701 226 AEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKCL 266 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~ 266 (1344)
.+.++.+. .-...+...++-+.+.+....+|+||||+..+
T Consensus 634 skligsp~-gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 634 SKLIGSPP-GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hhccCCCc-ccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 44444322 11112233456677765666778889998763
No 372
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.03 E-value=0.24 Score=58.28 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=49.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC-CCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT-PNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
.++++++|+.|+||||.+..++.....+..-..+..+..... ....+-++..++..+..................+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--R 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--c
Confidence 479999999999999999999987754322234555554331 2334445555666655432211111111112222 2
Q ss_pred CeEEEEEeCCC
Q 000701 253 KKILVVLDNLW 263 (1344)
Q Consensus 253 ~~~LlvlDdv~ 263 (1344)
..-.+++|...
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33467777765
No 373
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.99 E-value=0.33 Score=48.45 Aligned_cols=117 Identities=24% Similarity=0.183 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EE-EEEcCCCCCHHHHHHHHHH---Hhccc--c---ccccHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQ-VV-FSEVSQTPNIKDIQKEIAE---KLGLI--L---HEETVSRRAS 243 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~-wv~~~~~~~~~~~~~~i~~---~l~~~--~---~~~~~~~~~~ 243 (1344)
.+.|-|++..|.||||.|.-.+.+..... +.. ++ |+.-.........++...- ..+.. + +.......+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 46888999999999999999988776432 322 22 4443323333334433200 00110 0 1111112222
Q ss_pred ----HHHHHHHcCCeEEEEEeCCCCcc-----ccccccCcCCCCCCceEEEEEecCh
Q 000701 244 ----RLYERLKEEKKILVVLDNLWKCL-----NLETVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 244 ----~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
...+.+..+.-=++|||++-..- ..+++...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 23333334566799999985432 2234444444455677899999976
No 374
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.94 E-value=0.43 Score=52.95 Aligned_cols=91 Identities=22% Similarity=0.350 Sum_probs=61.1
Q ss_pred ccccchHHHHHHHHHHHH------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc----CCCC---CHH
Q 000701 153 EAFESRFSTLRDIRNALT------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV----SQTP---NIK 219 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~---~~~ 219 (1344)
..|+|-++.++++++.+. +.+.+++.+.||.|.||||||+.+.+-.+.- .+|.-. .+.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-----~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-----PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-----EEEEecCCccccChhhhCCH
Confidence 579999999999999987 3456899999999999999999998877642 333211 1111 155
Q ss_pred HHHHHHHHHhccccccccHHHHHHHHHHH
Q 000701 220 DIQKEIAEKLGLILHEETVSRRASRLYER 248 (1344)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 248 (1344)
++...+.+.++....++-.......+.+.
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~ 164 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEE 164 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHH
Confidence 66667777777655444333333333333
No 375
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=1 Score=51.61 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
..+-+.+.|++|.|||.|++.|+.+.... +.+++. .. +...+.++. +..+..++......
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSa----ss--------LtsK~~Ge~-eK~vralf~vAr~~ 244 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISA----SS--------LTSKYVGES-EKLVRALFKVARSL 244 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce-------EeeccH----HH--------hhhhccChH-HHHHHHHHHHHHhc
Confidence 34567799999999999999999887644 222222 11 111111111 22333344444446
Q ss_pred CeEEEEEeCCCCc
Q 000701 253 KKILVVLDNLWKC 265 (1344)
Q Consensus 253 ~~~LlvlDdv~~~ 265 (1344)
...++++|+++..
T Consensus 245 qPsvifidEidsl 257 (428)
T KOG0740|consen 245 QPSVIFIDEIDSL 257 (428)
T ss_pred CCeEEEechhHHH
Confidence 7788889998643
No 376
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.11 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.|.|.|++|+||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 377
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.92 E-value=0.086 Score=53.25 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
..++.+.|+.|+|||.+|+.++..... ......+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467899999999999999999998863 2245666677766444
No 378
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.91 E-value=0.084 Score=55.15 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC-CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ-TPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
++|.|+|+.|+||||++..+....... ....++.--.. ...... ...+..+-..... .......+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~~---~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQREVGLD---TLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeecccCCC---ccCHHHHHHHHhc-CC
Confidence 579999999999999999887766432 23333321111 110000 0001111000001 1111222333343 45
Q ss_pred eEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHH
Q 000701 254 KILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVL 294 (1344)
Q Consensus 254 ~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~ 294 (1344)
+=.+++|++.+.+......... ..|..++.|+....+.
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 6689999998765544322221 2345577777765544
No 379
>PTZ00301 uridine kinase; Provisional
Probab=93.85 E-value=0.06 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 380
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.83 E-value=0.047 Score=50.40 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 177 IGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
|.|+|++|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999877643
No 381
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.83 E-value=0.24 Score=61.44 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccc------cccHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILH------EETVSRRASRLY 246 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 246 (1344)
..+++-|+|++|+||||||.+++...... =..++|+...+.++++ .++.+|.+.+ ....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35789999999999999998887655432 3558899888777743 6667766432 122233333333
Q ss_pred HHHHcCCeEEEEEeCCCC
Q 000701 247 ERLKEEKKILVVLDNLWK 264 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~ 264 (1344)
..+.+++--++|+|.+..
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 333345677899998863
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.83 E-value=0.096 Score=52.81 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC--CCHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT--PNIKDIQKEIAEKLGLILHEETVSRRASRLYERLK 250 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 250 (1344)
...+++|.|+.|.|||||.+.++.... ...+.+++.-... .+..+. ..+.++....-.......-.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh
Confidence 456899999999999999999986542 2344555432111 111111 11112221111112222233444454
Q ss_pred cCCeEEEEEeCCCCccc---cccccCcCCC-CCCceEEEEEecChHHHH
Q 000701 251 EEKKILVVLDNLWKCLN---LETVGIPYGD-DHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 251 ~~~~~LlvlDdv~~~~~---~~~l~~~l~~-~~~~~~iivTtR~~~v~~ 295 (1344)
.++-++++|+.-..-+ .+.+...+.. ...+..||++|.+.....
T Consensus 99 -~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 -RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5778889999754422 1122212211 123566888888876443
No 383
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.82 E-value=0.11 Score=49.94 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=64.5
Q ss_pred CCCCcceeecccCCCcccccccHHHHhcCCcceEEEeCCCCCCcCC-cccccCCCCcEEEcCCCCCCCc--ccccccccc
Q 000701 524 EYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLP-SSMDLLVNLQTLSLDQSMLGDI--AIIGKLKNL 600 (1344)
Q Consensus 524 ~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L 600 (1344)
.+++|+.+.+.. . ...++...|..++.|+.+.+.++ +..++ ..|.++..|+++.+.. .+..+ ..+..+.+|
T Consensus 10 ~~~~l~~i~~~~-~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPN-T---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECC-C---eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 566788877653 2 56788888999999999999875 77765 4578888899999976 55545 567779999
Q ss_pred ceeecccCCCcccC-hhhhccCcccEEeccccccccccChhhhccCCcC
Q 000701 601 EILSMINSDIVKLP-EAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRL 648 (1344)
Q Consensus 601 ~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L 648 (1344)
+.+++..+ +..++ ..+.+. +|+.+.+.. .+..++...+.+..+|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 99999765 55565 456776 888888765 4666777666666655
No 384
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.80 E-value=0.25 Score=50.88 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC--CCCHHHHHHH------HHHHhccccc------cc-c
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ--TPNIKDIQKE------IAEKLGLILH------EE-T 237 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~------i~~~l~~~~~------~~-~ 237 (1344)
+..+++|+|+.|.|||||++.++.... ...+.+++.-.+ ..+....... +++.++.... .- .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 456999999999999999999987543 233444432111 1122222221 3444443211 11 1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCCCccc---cccccCcCCCC-CC-ceEEEEEecChHHHH
Q 000701 238 VSRRASRLYERLKEEKKILVVLDNLWKCLN---LETVGIPYGDD-HK-GCKILLTSRDRSVLL 295 (1344)
Q Consensus 238 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~l~~~-~~-~~~iivTtR~~~v~~ 295 (1344)
.....-.+...+. .++-++++|+.-..-+ .+.+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1222233444554 6778899998754421 22222222111 12 567888888766543
No 385
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.79 E-value=4 Score=46.49 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcccc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLIL 233 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 233 (1344)
.+.+|-.+|.-|.||||-|-.+++.++.+.+-..++-..+.. +..-+-++.++.+.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R-pAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR-PAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC-hHHHHHHHHHHHHcCCce
Confidence 456899999999999999999999888632222222222211 233445567777776544
No 386
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.79 E-value=0.22 Score=50.42 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+..+++|+|+.|.|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999987543
No 387
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.0095 Score=59.17 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=54.3
Q ss_pred cCccceeeccccceeeccccccchhhccCCCcccccccccEEEEccCcCChhhhhhhhhccCCCccEEEEccCcchh
Q 000701 731 SGTLNIYVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNME 807 (1344)
Q Consensus 731 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~L~~c~~l~ 807 (1344)
+|+.++..++.++.|.+.+|..+.+|+.+.... -.++|+.|+|++|+.+++- .+..+..+++|+.|.|.+.+.+.
T Consensus 116 eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 116 EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 456666677888888888888888876554444 6788888888888887764 34567778888888887765443
No 388
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.75 E-value=0.37 Score=58.11 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHc--CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 162 LRDIRNALTN--ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 162 ~~~l~~~l~~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
+..+.+.|.. ....++.|.|++|+|||||+.+++.....+ =..+++++..+ +.+++.+.. +.+|.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGI 315 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCC
Confidence 3445555543 245699999999999999999999877543 24567766543 445555543 45553
No 389
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.72 E-value=0.059 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986654
No 390
>PRK08233 hypothetical protein; Provisional
Probab=93.71 E-value=0.055 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 391
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.69 E-value=0.13 Score=50.63 Aligned_cols=104 Identities=25% Similarity=0.278 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
...+++|+|+.|.|||||++.++.... ...+.+|+.-. ..++.-..-.......-.+...+. .
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~~lS~G~~~rv~laral~-~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFEQLSGGEKMRLALAKLLL-E 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEccCCHHHHHHHHHHHHHh-c
Confidence 457899999999999999999986543 22344443210 000000000111222223444554 5
Q ss_pred CeEEEEEeCCCCccc---cccccCcCCCCCCceEEEEEecChHHHH
Q 000701 253 KKILVVLDNLWKCLN---LETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 253 ~~~LlvlDdv~~~~~---~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
++-++++|+.-..-+ .+.+...+... +..||++|.+.....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 667889998754421 12222122111 235888887765554
No 392
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.67 E-value=0.066 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
.+..+|+|.|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 393
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.011 Score=58.85 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=22.1
Q ss_pred ccccccEEEEecCCCcccccchhhHhhhcccceEEEcccccceE
Q 000701 1191 SFGNLTHLVVHDCEKLVSLVTCSVAKSLERLVMLSISGCSAMRQ 1234 (1344)
Q Consensus 1191 ~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~i~~c~~l~~ 1234 (1344)
.+++++.|.+.+|..+.+.....+.+-.++|+.|+|++|+.+++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34445555555555555444444444445555555555555544
No 394
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.65 E-value=0.27 Score=50.40 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764
No 395
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.65 E-value=3.9 Score=45.96 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=34.1
Q ss_pred cEEccCCCHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCChHHH
Q 000701 302 PFLIGVLNEEEAWRLFKMTAGDDV--EHRELNSTARNVAMACGGLPIAL 348 (1344)
Q Consensus 302 ~~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai 348 (1344)
++++.+++.+|+..++........ .....+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998874221 11334555667777779999754
No 396
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.64 E-value=0.096 Score=57.92 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=38.3
Q ss_pred cccccchHHHHH---HHHHHHHcCC--CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCC
Q 000701 152 YEAFESRFSTLR---DIRNALTNAN--AGIIGVYGMGGIGKTTLVKAVARQAKERKLF 204 (1344)
Q Consensus 152 ~~~~~gR~~~~~---~l~~~l~~~~--~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f 204 (1344)
.+.+||..+..+ -+++++..++ .+.|.+.|++|.|||+||..+++.+..+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 457999876654 4667776554 5899999999999999999999999866444
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.31 Score=60.35 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC--HHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN--IKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
.++|+++|+.|+||||.+..++...........+..++... +. ..+.++...+.++...........+....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-
Confidence 47999999999999999999987764332223455555432 32 445566667777765433223333444444443
Q ss_pred CCeEEEEEeCCC
Q 000701 252 EKKILVVLDNLW 263 (1344)
Q Consensus 252 ~~~~LlvlDdv~ 263 (1344)
++ =++++|-..
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 478888776
No 398
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.63 E-value=0.58 Score=57.02 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=45.6
Q ss_pred cccccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCC
Q 000701 152 YEAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQT 215 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 215 (1344)
...++|+...++++.+.+. .....-|.|+|..|+|||++|+.+....... -...+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 4568999999988888887 3445678999999999999999998754311 223455666554
No 399
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.60 E-value=0.23 Score=57.29 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=55.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHHH---
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVSR--- 240 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 240 (1344)
.....++|+|+.|+|||||++.++.... .+.++..-+++.. .+.++.++.+..-+.. ..++....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3456899999999999999998885432 3556666666544 3555666654432111 11111111
Q ss_pred ---HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 241 ---RASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 241 ---~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
.+..+.+++. ++++.|+++||+-..
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1233445553 589999999998543
No 400
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.31 Score=56.50 Aligned_cols=90 Identities=19% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.+...++|+|..|+|||||++.++.... .+.+++.-+++.. .+.++.++.+..-+.. ..++...
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 4567899999999999999999987654 2455556665543 3555555444432211 1111111
Q ss_pred --HHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. ++++.|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12233455553 589999999998543
No 401
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.58 E-value=0.34 Score=56.35 Aligned_cols=93 Identities=20% Similarity=0.377 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.+...++|.|.+|+|||+|+..++...... +-+.++|+-+++.. ...++.+++...=... ..++...
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 455789999999999999999998875422 34678888887654 3566666655431111 1111111
Q ss_pred --HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK--EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~--~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. ++++.|+++||+-..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12334556665 379999999998544
No 402
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.55 E-value=0.46 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998875
No 403
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.52 E-value=0.07 Score=56.38 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998764
No 404
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.48 E-value=0.15 Score=48.48 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=29.9
Q ss_pred HHHHHHHHHHc--CCCeEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 161 TLRDIRNALTN--ANAGIIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 161 ~~~~l~~~l~~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
+..++.+.+.. ....+|++.|.-|+||||+++.+++....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34444444442 34569999999999999999999988754
No 405
>PRK06762 hypothetical protein; Provisional
Probab=93.47 E-value=0.073 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+.+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 406
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.45 E-value=0.33 Score=57.13 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHHH-cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEE-EEEEcCCCC-CHHHHHHHHHHHhccccccccH---
Q 000701 165 IRNALT-NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQV-VFSEVSQTP-NIKDIQKEIAEKLGLILHEETV--- 238 (1344)
Q Consensus 165 l~~~l~-~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~--- 238 (1344)
+++.+. -+....+.|+|++|+|||||++.+++..... +-+.. +.+-+.+.. .+.++.+.+-..+-....+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 444444 2455688999999999999999999876532 22333 344444433 2333433331111111111111
Q ss_pred ---HHHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 239 ---SRRASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 239 ---~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
...+..+.+++. .++.+||++|++-..
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 122233444553 589999999998643
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.41 E-value=0.18 Score=51.81 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNI 218 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 218 (1344)
.|+|+|-||+||||+|...+.....+..| .+.-|...+.++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999999977776655433 3555666665543
No 408
>COG4240 Predicted kinase [General function prediction only]
Probab=93.36 E-value=0.48 Score=48.14 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=55.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc-----cccccccHHHHHHHH
Q 000701 171 NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG-----LILHEETVSRRASRL 245 (1344)
Q Consensus 171 ~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~l 245 (1344)
.+++=+++|.|+-|+||||++..++.....+.. ..+...++.+-+-..+-.-.++++.. ...++..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 355668999999999999999999998886643 46777777665555555555666541 122334445556667
Q ss_pred HHHHHcCC
Q 000701 246 YERLKEEK 253 (1344)
Q Consensus 246 ~~~l~~~~ 253 (1344)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776555
No 409
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.078 Score=54.54 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
++.+|+|.|.+|+||||+|+.+...+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 34689999999999999999999988743
No 410
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.34 E-value=0.24 Score=57.25 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHHH-------c---C--------CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 153 EAFESRFSTLRDIRNALT-------N---A--------NAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~---~--------~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..++|.++.++.+...+. . . ....|.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 457899998888876652 1 1 124799999999999999999997664
No 411
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.33 E-value=0.15 Score=51.75 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..+|+|-||-|+||||||+..+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.33 E-value=0.21 Score=59.11 Aligned_cols=86 Identities=27% Similarity=0.350 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHc
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEE--TVSRRASRLYERLKE 251 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 251 (1344)
..++.|.|++|+|||||+.+++.....+ -..++|++..+. ..++.. .++.++...+.. ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999999877532 245788876443 334332 245555422110 000112334444433
Q ss_pred CCeEEEEEeCCCC
Q 000701 252 EKKILVVLDNLWK 264 (1344)
Q Consensus 252 ~~~~LlvlDdv~~ 264 (1344)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4555777887743
No 413
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.32 E-value=0.051 Score=59.61 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccc-cHHHH
Q 000701 163 RDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEE-TVSRR 241 (1344)
Q Consensus 163 ~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~ 241 (1344)
..+++.+... .+-+.++|+.|+|||++++.......... | .+.-++.+...+...+.+.+-..+....... .+
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 4455555544 45668999999999999999886543221 1 2345566555444444332221111100000 00
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 242 ASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 242 ~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
..+|+.++.+||+.-+
T Consensus 97 --------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --------ESSSEEEEEEETTT-S
T ss_pred --------CCCcEEEEEecccCCC
Confidence 0378899999998644
No 414
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.30 E-value=0.26 Score=56.16 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=50.4
Q ss_pred ccccchHHHHHHHHHHHHc--------------CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCCEEEEEEc-CCCC
Q 000701 153 EAFESRFSTLRDIRNALTN--------------ANAGIIGVYGMGGIGKTTLVKAVARQAKERK-LFDQVVFSEV-SQTP 216 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~--------------~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~~-~~~~ 216 (1344)
..++|.++.++.+..++.. -..+.|.++|++|+|||++|+.++....... .++...|... ....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4588999999888877742 0136789999999999999999998875320 1122222221 2233
Q ss_pred CHHHHHHHHHHHh
Q 000701 217 NIKDIQKEIAEKL 229 (1344)
Q Consensus 217 ~~~~~~~~i~~~l 229 (1344)
+.+.+.+.+....
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665544
No 415
>PRK15453 phosphoribulokinase; Provisional
Probab=93.29 E-value=0.48 Score=51.10 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.+.++|+|.|.+|+||||+|+.+++.++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999997665
No 416
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.078 Score=49.86 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPN 217 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 217 (1344)
.+-|.|.|-+|+||||+|.+++.....+ |+.+++-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~-------~i~isd~vk 43 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE-------YIEISDLVK 43 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc-------eEehhhHHh
Confidence 3568999999999999999999655422 676665433
No 417
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.43 Score=50.17 Aligned_cols=98 Identities=27% Similarity=0.340 Sum_probs=62.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHH-------------cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcC
Q 000701 147 QSSTGYEAFESRFSTLRDIRNALT-------------NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVS 213 (1344)
Q Consensus 147 ~~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 213 (1344)
+|...+.++-|-+..+++|.+.+. -..++-|.++|.+|.|||-||+.|+++-... |-.++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvv----- 251 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVV----- 251 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhh-----
Confidence 344445566678888888888875 1345678899999999999999999977644 42211
Q ss_pred CCCCHHHHHHH-HHHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 214 QTPNIKDIQKE-IAEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 214 ~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
-.+ |-+.+|. ....+.++++.....-+-++.+|+++..
T Consensus 252 --------GseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 252 --------GSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred --------hHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 111 2223331 2344555666555566777888887643
No 418
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.21 E-value=0.48 Score=55.28 Aligned_cols=93 Identities=25% Similarity=0.407 Sum_probs=58.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.+...++|.|.+|+|||||+..++....... -+.++++-+++.. .+.++.+++...=... ..++...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4557899999999999999999987765432 2467777776544 4566666665432111 1111111
Q ss_pred --HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK--EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~--~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. +++++|+++|++-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12233555552 589999999998543
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.21 E-value=0.43 Score=51.98 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccccccccHHHHHHHHHHHHHc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLILHEETVSRRASRLYERLKE 251 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 251 (1344)
+..+++++|+.|+||||+++.++.....+. ..+.++...... ....-++..++.++...........+....+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765331 345566654322 12222233344444332222223333344444432
Q ss_pred -CCeEEEEEeCCCCc
Q 000701 252 -EKKILVVLDNLWKC 265 (1344)
Q Consensus 252 -~~~~LlvlDdv~~~ 265 (1344)
.+.=++++|.....
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 34568889987544
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.19 E-value=0.12 Score=50.34 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998754 355555666655
No 421
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.18 E-value=0.24 Score=53.31 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
...++.|.|++|+|||++|.+++.....+. =..++|++..+. .+++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHH
Confidence 456999999999999999999886553220 134778877543 3444444
No 422
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.12 E-value=0.29 Score=56.82 Aligned_cols=90 Identities=17% Similarity=0.327 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHh-----ccccc-cccHH------H
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKL-----GLILH-EETVS------R 240 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~-~~~~~------~ 240 (1344)
....++|+|+.|+|||||++.++.... ....+++..-....++.++........ +.-.. ++... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 456899999999999999988875432 123444443323444554444333322 11111 11111 1
Q ss_pred HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 241 RASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 241 ~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
.+..+.+++. ++++.|+++||+-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2223444543 589999999998543
No 423
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.09 E-value=0.086 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 424
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.04 E-value=0.31 Score=57.81 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=53.4
Q ss_pred HHHHHHHHc--CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccc--cH
Q 000701 163 RDIRNALTN--ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEE--TV 238 (1344)
Q Consensus 163 ~~l~~~l~~--~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~ 238 (1344)
..+.+.|.. ....++.|.|.+|+|||||+.+++....... ..++|++..+. ..++.. -+..++...... ..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLS 155 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcC
Confidence 444454532 2346999999999999999999988765432 35788876543 333322 233444321110 00
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000701 239 SRRASRLYERLKEEKKILVVLDNLWK 264 (1344)
Q Consensus 239 ~~~~~~l~~~l~~~~~~LlvlDdv~~ 264 (1344)
......+.+.+.+.+.-++|+|.+..
T Consensus 156 e~~~~~I~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 156 ETNWEQICANIEEENPQACVIDSIQT 181 (454)
T ss_pred CCCHHHHHHHHHhcCCcEEEEecchh
Confidence 01123334444334555677777753
No 425
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.03 E-value=0.82 Score=49.24 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLG 230 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 230 (1344)
....+.|.|++|+|||++|.+++.....+ -..++|++... +.+++.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 45799999999999999999987654322 35678887743 34444433 44444
No 426
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.01 E-value=0.38 Score=51.10 Aligned_cols=122 Identities=22% Similarity=0.264 Sum_probs=65.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC-----CCCHHHHHHHHHHHhcccc-------ccccHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ-----TPNIKDIQKEIAEKLGLIL-------HEETVS 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~ 239 (1344)
.+..+++|+|..|.||||+++.+..-.... .+.+++.-.+ .....+-..+++..+|... .+-+..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 345799999999999999999998765422 3333333221 1123334455556555322 111112
Q ss_pred HH-HHHHHHHHHcCCeEEEEEeCCCCcccc---cc---ccCcCCCCCCceEEEEEecChHHHHhhC
Q 000701 240 RR-ASRLYERLKEEKKILVVLDNLWKCLNL---ET---VGIPYGDDHKGCKILLTSRDRSVLLKMG 298 (1344)
Q Consensus 240 ~~-~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~---l~~~l~~~~~~~~iivTtR~~~v~~~~~ 298 (1344)
+. .-.+.+.+ .-++-++|.|+.-+.-+. .. +...+. ...|...++.|.+-.++..+.
T Consensus 114 QrQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 22 22233444 378889999986554221 11 111111 123455777777777766543
No 427
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.23 Score=49.81 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcC
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEE 252 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 252 (1344)
+..+++|+|+.|.|||||++.++.... ...+.+++........ ........++....-...+...-.+...+. .
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~-~ 97 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVPQLSGGQRQRVALARALL-L 97 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEeeCCHHHHHHHHHHHHHh-c
Confidence 347999999999999999999987543 2344455433211110 011112222221111112222333445554 5
Q ss_pred CeEEEEEeCCCCccc---cccccCcCCC-CCCceEEEEEecChHHHHh
Q 000701 253 KKILVVLDNLWKCLN---LETVGIPYGD-DHKGCKILLTSRDRSVLLK 296 (1344)
Q Consensus 253 ~~~LlvlDdv~~~~~---~~~l~~~l~~-~~~~~~iivTtR~~~v~~~ 296 (1344)
.+-++++|+.-..-+ ...+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 678899999765422 1112111111 1124568888887766554
No 428
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.99 E-value=0.15 Score=61.01 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.1
Q ss_pred cccchHHHHHHHHHHHHc-----CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 154 AFESRFSTLRDIRNALTN-----ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~-----~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
+++--.+-++++..||.. ...+++.++||+|+||||.++.+++... |+.+-|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344445667888888872 2357899999999999999999998875 666778644
No 429
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.97 E-value=0.24 Score=64.05 Aligned_cols=193 Identities=17% Similarity=0.117 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CCEEEEEEcCCCC----CHH--HHHHHHHHHhccccccccHHHHHHHHH
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKL--FDQVVFSEVSQTP----NIK--DIQKEIAEKLGLILHEETVSRRASRLY 246 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~l~ 246 (1344)
.-+.|+|.+|+||||+.+.++-....+.. -+..+++.+.... ... .+..-+...+........... ..
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~---~~- 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIE---AH- 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhH---HH-
Confidence 47899999999999999999977664421 1234444443111 111 122222222222111111111 11
Q ss_pred HHHHcCCeEEEEEeCCCCccc------cccccCcCCCCCCceEEEEEecChHHHHhhCCCCcEEccCCCHHHHHHHHHHH
Q 000701 247 ERLKEEKKILVVLDNLWKCLN------LETVGIPYGDDHKGCKILLTSRDRSVLLKMGSAPPFLIGVLNEEEAWRLFKMT 320 (1344)
Q Consensus 247 ~~l~~~~~~LlvlDdv~~~~~------~~~l~~~l~~~~~~~~iivTtR~~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 320 (1344)
..+.+..++++++|.++.... ... ...+....+.+++|+|.|....-.........++..+.++.-.......
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 233358899999999886621 111 2234445678899999997765554444555666666665544333311
Q ss_pred h--------CCCCCCc---chHHH---HHHHHHHhCCChHHHHHHHHHHh------cCCHHHHHHHHHHhcC
Q 000701 321 A--------GDDVEHR---ELNST---ARNVAMACGGLPIALTTIARALR------NRSMREWKNALQQLRA 372 (1344)
Q Consensus 321 ~--------~~~~~~~---~~~~~---~~~i~~~~~g~Plai~~~~~~l~------~~~~~~w~~~l~~l~~ 372 (1344)
. +...... ....+ ..+-.+.....|+++.+....-. .....-++.+.+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 1 1111111 11111 12333444778998888875544 2355667777665544
No 430
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.95 E-value=0.92 Score=51.00 Aligned_cols=39 Identities=33% Similarity=0.571 Sum_probs=30.6
Q ss_pred HHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 163 RDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 163 ~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
..+.+.+. .++..+|+|.|++|+||||++..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34455443 3567799999999999999999998888754
No 431
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.94 E-value=0.14 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998764
No 432
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.93 E-value=0.21 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
...+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45699999999999999999998754
No 433
>PRK03839 putative kinase; Provisional
Probab=92.92 E-value=0.089 Score=54.21 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.88 E-value=0.13 Score=65.03 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH-hhcCCCCEEEEEEcCCCCC---HHHHH------HHHHHHhccccccccHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQA-KERKLFDQVVFSEVSQTPN---IKDIQ------KEIAEKLGLILHEETVSRRA 242 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~---~~~~~------~~i~~~l~~~~~~~~~~~~~ 242 (1344)
+.++++|+|+.|.||||+.+.+.-.. -.... +++++..... ...+. ..+...+..- .......
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStf---S~~m~~~ 393 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTF---SGHMKNI 393 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccccchhheeeecChHhHHhhhhhHH---HHHHHHH
Confidence 34799999999999999999998652 11111 1111111000 00000 1111111100 0011112
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCccc---ccc----ccCcCCCCCCceEEEEEecChHHHHhhCCCCcEEccC--CCHHHH
Q 000701 243 SRLYERLKEEKKILVVLDNLWKCLN---LET----VGIPYGDDHKGCKILLTSRDRSVLLKMGSAPPFLIGV--LNEEEA 313 (1344)
Q Consensus 243 ~~l~~~l~~~~~~LlvlDdv~~~~~---~~~----l~~~l~~~~~~~~iivTtR~~~v~~~~~~~~~~~l~~--L~~~e~ 313 (1344)
..+...+ .++-|+++|+....-+ ... +...+. ..|+.+|+||....+.........+.-.. ++.+.
T Consensus 394 ~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~- 468 (771)
T TIGR01069 394 SAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEET- 468 (771)
T ss_pred HHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCC-
Confidence 2222222 5789999999875422 111 222222 25778999999887654321111111100 11110
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000701 314 WRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLR 371 (1344)
Q Consensus 314 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~ 371 (1344)
. -|..+.-...+ ....|-.|++++ |+|-.|..-|..+......++..++..+.
T Consensus 469 l-~p~Ykl~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 469 L-SPTYKLLKGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred C-ceEEEECCCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0 01111111111 124577788776 78888888887776555556666665543
No 435
>PRK13949 shikimate kinase; Provisional
Probab=92.80 E-value=0.18 Score=51.12 Aligned_cols=24 Identities=50% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.|.|+|+.|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 436
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.79 E-value=0.74 Score=53.70 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHHHHHhh-----cCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc-cc-------cccc
Q 000701 172 ANAGIIGVYGMGGIGKTTLV-KAVARQAKE-----RKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL-IL-------HEET 237 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~ 237 (1344)
.+...+.|.|..|+|||+|| -.+.++... ...-+.++++-+++..+.-.-+.+.+++-+. .. ..+.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 45578999999999999997 556665532 1234567888888766433224444444331 11 1111
Q ss_pred HHH------HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 238 VSR------RASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 238 ~~~------~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
... ....+.+++. +++..|+|+||+-.-
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 111 1223444443 589999999998543
No 437
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.78 E-value=0.25 Score=60.85 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=53.2
Q ss_pred cccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 152 YEAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
.+.++|+++.++.+...+... +.+.++|++|+|||++|+.+++..... .|..++++.-+ ..+..++++.++.+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 356789999888888877654 366699999999999999999877533 23434444333 33555667777766654
No 438
>PRK04040 adenylate kinase; Provisional
Probab=92.73 E-value=0.11 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998774
No 439
>PRK00625 shikimate kinase; Provisional
Probab=92.71 E-value=0.097 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.|.|+|++|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998775
No 440
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.69 E-value=0.35 Score=54.29 Aligned_cols=31 Identities=35% Similarity=0.609 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 171 NANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 171 ~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
.+...+|+|+|++|+||||++..+......+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567899999999999999999999877654
No 441
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.68 E-value=0.43 Score=55.24 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhh------c-----CCCCEEEEEEcCCCCCHHHHHHHHHHHhc-ccc------
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKE------R-----KLFDQVVFSEVSQTPNIKDIQKEIAEKLG-LIL------ 233 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~------ 233 (1344)
.+...++|.|.+|+|||+|+..+++..+. . ..-..+++.-+++.....+.+...+..-+ ...
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45578999999999999999999987651 0 01115677777777666666666666554 111
Q ss_pred -ccccHHH------HHHHHHHHHH--cCCeEEEEEeCCCC
Q 000701 234 -HEETVSR------RASRLYERLK--EEKKILVVLDNLWK 264 (1344)
Q Consensus 234 -~~~~~~~------~~~~l~~~l~--~~~~~LlvlDdv~~ 264 (1344)
.++.... .+..+.+++. ++++.|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 2234556665 48999999999853
No 442
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.67 E-value=0.26 Score=56.37 Aligned_cols=65 Identities=22% Similarity=0.151 Sum_probs=49.2
Q ss_pred cccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHH
Q 000701 154 AFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 225 (1344)
.++|+++.+..+..++.. .+-+.+.|++|+|||++|+.++..... ..+++.+.....+.++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 378888888877777663 356889999999999999999998862 24566777777777665544
No 443
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.67 E-value=0.25 Score=62.72 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=42.5
Q ss_pred ccccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 153 EAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
..++|+...++.+.+.+. .....-|.|+|..|+|||++|+.+....... -...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 358899888888877765 3444578999999999999999998754311 12344555554
No 444
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.23 Score=48.50 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.7
Q ss_pred HcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 170 TNANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 170 ~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
...+..+|.++|.+|.||||+|..+...+..+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34566799999999999999999999988754
No 445
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.61 E-value=0.68 Score=51.45 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEK 228 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 228 (1344)
...++.|.|++|+|||+++.+++....... =..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 345899999999999999999988765331 24578887755 345565555443
No 446
>PHA02774 E1; Provisional
Probab=92.58 E-value=0.23 Score=58.70 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHc-CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 161 TLRDIRNALTN-ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 161 ~~~~l~~~l~~-~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
.+..+..++.. ++..-+.|+|++|+|||.+|..+++-.. -..+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 45666666653 2335899999999999999999998763 234567765
No 447
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.33 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVAR 196 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~ 196 (1344)
....++|+||-|.|||||.+.+..
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999986
No 448
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.54 E-value=0.17 Score=50.77 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
..++++|+|+.|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999888653
No 449
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.53 E-value=0.099 Score=54.30 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=78.9
Q ss_pred ccccCCCCcEEEcCCCCCCC-----c-cccccccccceeecccCC----CcccC-------hhhhccCcccEEecccccc
Q 000701 571 SMDLLVNLQTLSLDQSMLGD-----I-AIIGKLKNLEILSMINSD----IVKLP-------EAFGLLTKLRLLDLTDCFQ 633 (1344)
Q Consensus 571 ~i~~L~~Lr~L~L~~~~i~~-----l-~~i~~L~~L~~L~l~~~~----l~~lp-------~~i~~L~~L~~L~l~~~~~ 633 (1344)
.+..+..+..++|++|.|.. + ..|.+-.+|+.-+++.-. ..++| +.+-++++|+..+|+.|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788999999998753 4 667788899999888531 12333 3567889999999999854
Q ss_pred ccccChh---hhccCCcCCEEEcccccccceeccccccccccch------hhhcCCCCCcEEEEEeCCCCCCCC
Q 000701 634 LKVIAPN---VLSSLIRLEELYMRNCFVQWEVRGVNTERSCAGL------DELMHLPRLTSLEIDIGNDDILPE 698 (1344)
Q Consensus 634 l~~~~~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l------~~L~~l~~L~~L~l~~~~~~~~~~ 698 (1344)
-...|+. .|++-+.|.||.+++|.+.-...+. -+..+ +..++-+.|+...+..|.....+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r----igkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR----IGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhH----HHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 3444432 3667789999999998662211111 11111 122344567777666666655554
No 450
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.52 E-value=0.19 Score=55.27 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=41.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhcc
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
+..+++.|+|.+|+|||++|.+++...... ...++||+..+. .+++.+.... ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 456799999999999999999999988755 777999987653 4444444433 543
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.51 E-value=0.56 Score=52.69 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
+..+++++|+.|+||||++..++...+... ..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 467999999999999999999998876432 23444444
No 452
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.51 E-value=0.5 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
+|+|.|.+|+||||+|+.+...++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 453
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.47 E-value=0.069 Score=49.70 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCE
Q 000701 177 IGVYGMGGIGKTTLVKAVARQAKERKLFDQ 206 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 206 (1344)
|.|+|.+|+|||++|+.++...... |..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE
Confidence 6799999999999999999887633 543
No 454
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.45 E-value=0.88 Score=44.25 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=68.1
Q ss_pred chhHHH-HHHHHHHhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 000701 2 VESIVT-VVIEVAKCLAPPTEHQFNYFRNYKSNFKNLKEELENLKGDRDSMQHRVEDAKRQGEVIEGNVEKWLTKAKNIV 80 (1344)
Q Consensus 2 ~e~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~wl~~~~~~~ 80 (1344)
||.++| |+|.+++-+...+.+... ....-+.-+++|.+.++.+..++++.+..+...+...+.=+.++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~-------k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASK-------KSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 455555 556666666655554443 233335556667777777777777776655555666677788999999
Q ss_pred HHHHHHHhhHHHhccccccCCCcChhhhhHHHHHHHHhcccccc
Q 000701 81 IDAEKIIGDEEKANNRCFKGLCPNLKTRYQLSKAAQEQLKPIVN 124 (1344)
Q Consensus 81 ~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 124 (1344)
.+++++++.+...+ +.++...++.+++|.++-+.+..
T Consensus 76 ~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~ 112 (147)
T PF05659_consen 76 EKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRR 112 (147)
T ss_pred HHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHH
Confidence 99999998774321 11233445566777776655543
No 455
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.43 E-value=0.38 Score=50.12 Aligned_cols=117 Identities=22% Similarity=0.250 Sum_probs=59.1
Q ss_pred HHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHH
Q 000701 164 DIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRAS 243 (1344)
Q Consensus 164 ~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 243 (1344)
+.++.+..++.+++.|.|++|+||||+++.+........ ..++++.... .....+.+..+.... + +.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~-----~Aa~~L~~~~~~~a~--T----i~ 74 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTN-----KAAKELREKTGIEAQ--T----IH 74 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSH-----HHHHHHHHHHTS-EE--E----HH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcH-----HHHHHHHHhhCcchh--h----HH
Confidence 334444445567899999999999999999988777542 2334433221 222223333332111 0 00
Q ss_pred HHHHHHH---------cCCeEEEEEeCCCCcc--ccccccCcCCCCCCceEEEEEecChHHHH
Q 000701 244 RLYERLK---------EEKKILVVLDNLWKCL--NLETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 244 ~l~~~l~---------~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
.+..... ..+.-++|+|++...+ .+..+...... .++|+|+.--.....+
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~p 135 (196)
T PF13604_consen 75 SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLPP 135 (196)
T ss_dssp HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHHH
T ss_pred HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhcC
Confidence 0000000 0234599999998764 34444333322 4778888776554433
No 456
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.42 E-value=0.77 Score=53.42 Aligned_cols=93 Identities=23% Similarity=0.396 Sum_probs=59.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.+...++|.|.+|+|||+|+..++....... -+.++++-+++.. .+.++.+++...=... ..++...
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4557899999999999999999987765332 2467777776543 4566766664331111 1111111
Q ss_pred --HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK--EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~--~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. +++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12334556664 378999999998644
No 457
>PRK13768 GTPase; Provisional
Probab=92.41 E-value=0.67 Score=50.51 Aligned_cols=36 Identities=33% Similarity=0.389 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
.+++|.|++|+||||++..++......+ ..++.+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 5789999999999999999998876432 23445544
No 458
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.39 E-value=0.13 Score=52.89 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
....|.|+|++|+||||+|+.++....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998874
No 459
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.38 E-value=0.28 Score=47.90 Aligned_cols=37 Identities=16% Similarity=-0.053 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEc
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEV 212 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1344)
.+.|.|+.|.|||+.+..++...........++|+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcC
Confidence 4789999999999999999887765434566777643
No 460
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.38 E-value=0.25 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000701 164 DIRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKER 201 (1344)
Q Consensus 164 ~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~ 201 (1344)
+..+++...+..+|.|.|.+|+|||||+..+......+
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 34455556778999999999999999999999987543
No 461
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.38 E-value=0.35 Score=52.79 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
.|.++|.+|+||||+|+.++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 462
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.38 E-value=0.51 Score=54.60 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHH-----cC--CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 000701 159 FSTLRDIRNALT-----NA--NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFS 210 (1344)
Q Consensus 159 ~~~~~~l~~~l~-----~~--~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv 210 (1344)
..-+.++.+||. .+ +.++..|+|++|+||||.++.++..+. +..+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ceeeeec
Confidence 344677888887 33 346999999999999999999988765 3334465
No 463
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=0.39 Score=48.91 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCC--EEEEEEcCCCCCHHHHHHHHHHHh--------cccc
Q 000701 165 IRNALTNANAGIIGVYGMGGIGKTTLVKAVARQAKER-KLFD--QVVFSEVSQTPNIKDIQKEIAEKL--------GLIL 233 (1344)
Q Consensus 165 l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~-~~f~--~~~wv~~~~~~~~~~~~~~i~~~l--------~~~~ 233 (1344)
++..+.+...--..|.|++|+||||+.+.++.-.... ..|. .+.-++-+ .+|+..+ +...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer---------sEIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER---------SEIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc---------chhhccccCCchhhhhhhh
Confidence 4555554444557899999999999999999877643 1232 22222221 1222211 1111
Q ss_pred ccccHHHHHHHHHHHHHcCCeEEEEEeCCCCccccccccCcCCCCCCceEEEEEecChHHHH
Q 000701 234 HEETVSRRASRLYERLKEEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
+-.+..-..+.+.......-+=++|+|++...++-.++..++ ..|.+++.|..-..+..
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ied 257 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIED 257 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHH
Confidence 101111112223333334567789999998886655444433 46888888876544433
No 464
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.27 E-value=0.64 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
++++|+|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998644
No 465
>PRK08149 ATP synthase SpaL; Validated
Probab=92.24 E-value=0.49 Score=54.86 Aligned_cols=90 Identities=13% Similarity=0.284 Sum_probs=53.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC-CCCHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ-TPNIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.+...++|+|..|+|||||+..++.... -+.++...+.. ..++.++..+........ ..++...
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3557899999999999999998886432 23333344433 334556666655432211 1111111
Q ss_pred --HHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. ++++.|+++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12334445553 589999999998543
No 466
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.21 E-value=0.47 Score=55.00 Aligned_cols=90 Identities=19% Similarity=0.385 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhccc-------cccccHHH---
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLGLI-------LHEETVSR--- 240 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 240 (1344)
.+...++|.|..|+|||||.+.++.... -+.+++.-+++.. .+.++.+..+..-+.. ..++....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999987653 3566777776554 4555554443321111 11111111
Q ss_pred ---HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 241 ---RASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 241 ---~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
.+..+.+++. ++++.|+++|++-..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233445553 589999999998643
No 467
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.42 Score=48.79 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
...+++|+|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 468
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.11 Score=50.57 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVA 195 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~ 195 (1344)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 469
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.18 E-value=0.87 Score=49.19 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCCEE-EEEEcCCCC-CHHHHHHHHHHHhcc-------ccccccHHH-
Q 000701 172 ANAGIIGVYGMGGIGKTTLV-KAVARQAKERKLFDQV-VFSEVSQTP-NIKDIQKEIAEKLGL-------ILHEETVSR- 240 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~- 240 (1344)
.+...++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++...-.. ...++....
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 34568999999999999996 4454432 23444 666666654 456666666532111 011111111
Q ss_pred -----HHHHHHHHHH-cCCeEEEEEeCCCCc-cccccc
Q 000701 241 -----RASRLYERLK-EEKKILVVLDNLWKC-LNLETV 271 (1344)
Q Consensus 241 -----~~~~l~~~l~-~~~~~LlvlDdv~~~-~~~~~l 271 (1344)
.+..+.+++. ++++.|+++||+-.. .++.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1233444444 489999999998654 344443
No 470
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.13 E-value=0.72 Score=54.03 Aligned_cols=93 Identities=24% Similarity=0.352 Sum_probs=58.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHHHHHhc--c------------ccccc
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEIAEKLG--L------------ILHEE 236 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--~------------~~~~~ 236 (1344)
.+...++|.|.+|+|||+|+..++...... +-+.++++-+++.. .+.++...+...-. . ....+
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 455789999999999999999988774321 12678888887654 45666666655110 0 00111
Q ss_pred cHH------HHHHHHHHHHHc-CC-eEEEEEeCCCCc
Q 000701 237 TVS------RRASRLYERLKE-EK-KILVVLDNLWKC 265 (1344)
Q Consensus 237 ~~~------~~~~~l~~~l~~-~~-~~LlvlDdv~~~ 265 (1344)
... ..+..+.+++.. ++ ++|+++||+-..
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 111 223346666653 44 999999998643
No 471
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.09 E-value=0.56 Score=50.08 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHHH----c---CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCC-CCEEE-EEEcCCCCCHHHHHHHH
Q 000701 155 FESRFSTLRDIRNALT----N---ANAGIIGVYGMGGIGKTTLVKAVARQAKERKL-FDQVV-FSEVSQTPNIKDIQKEI 225 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~----~---~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~-wv~~~~~~~~~~~~~~i 225 (1344)
++|..-..+.++..+. + .++=+++.+|.+|+||..+++.+++....... -+.|- ++..-+-+....+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i---- 159 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI---- 159 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH----
Confidence 4565555555666655 2 23448999999999999999999987643211 11110 1111111111111
Q ss_pred HHHhccccccccHHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000701 226 AEKLGLILHEETVSRRASRLYERLKEEKKILVVLDNLWKC 265 (1344)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 265 (1344)
+.-.++....+.+....-+|-|+|+|+|+..
T Consensus 160 ---------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 ---------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ---------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0111222333444444578999999999876
No 472
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.08 E-value=0.14 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999987753
No 473
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=92.08 E-value=1.4 Score=50.74 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHHHH---cCCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-------CHHHHHHH
Q 000701 155 FESRFSTLRDIRNALT---NANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-------NIKDIQKE 224 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~---~~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-------~~~~~~~~ 224 (1344)
-|||+.+++.+.+.|. ++...+-.|.|.-|.|||.+++.+.+....+ .| .+..+.+++.. ....+.++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~-~f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEK-GF-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc-CC-EEEEEecCCCcccccccccHHHHHHH
Confidence 4899999999988876 5677788999999999999999999887754 23 35566666532 46789999
Q ss_pred HHHHhccccccc
Q 000701 225 IAEKLGLILHEE 236 (1344)
Q Consensus 225 i~~~l~~~~~~~ 236 (1344)
|++.+.....+.
T Consensus 105 l~~nL~t~~~p~ 116 (416)
T PF10923_consen 105 LMRNLSTKTKPE 116 (416)
T ss_pred HHHhcCCCCCCC
Confidence 999998765443
No 474
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.98 E-value=0.28 Score=50.33 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=31.5
Q ss_pred ccccchHHHHHHHHHHHHcCCCeEEEEEcCCCCcHHHHHHHHHH
Q 000701 153 EAFESRFSTLRDIRNALTNANAGIIGVYGMGGIGKTTLVKAVAR 196 (1344)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~~i~I~G~~G~GKTtLa~~v~~ 196 (1344)
..++|.+..++.+.=+... .+-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4578888887777665553 46899999999999999999975
No 475
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.97 E-value=0.12 Score=54.76 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVAR 196 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~ 196 (1344)
..++++|.|+.|.||||+.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999986
No 476
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.93 E-value=0.18 Score=52.03 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ 214 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 214 (1344)
.++|.|+|+.|+|||||++.+...... .|..+++.+-..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~TTR~ 40 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHTTRP 40 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEESS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeecccC
Confidence 578999999999999999999987763 376666665543
No 477
>PRK01184 hypothetical protein; Provisional
Probab=91.92 E-value=0.53 Score=48.70 Aligned_cols=21 Identities=57% Similarity=0.839 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 000701 175 GIIGVYGMGGIGKTTLVKAVAR 196 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~ 196 (1344)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 478
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.88 E-value=0.12 Score=52.74 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 479
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.87 E-value=1 Score=50.07 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC-CHHHHHHHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTP-NIKDIQKEI 225 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 225 (1344)
.+...++|.|..|+|||+|++++++... -+.++++-+++.. .+.+++.++
T Consensus 155 ~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 155 VKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred cCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 4456899999999999999999888543 4578888887654 355555554
No 480
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.87 E-value=0.35 Score=56.72 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCeEEEEEcCCCCcHHH-HHHHHHHHHhhcCCCCEEEEEEcCCCC--CHHHHHHHHHHHhcccccc-----
Q 000701 164 DIRNALTNANAGIIGVYGMGGIGKTT-LVKAVARQAKERKLFDQVVFSEVSQTP--NIKDIQKEIAEKLGLILHE----- 235 (1344)
Q Consensus 164 ~l~~~l~~~~~~~i~I~G~~G~GKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~----- 235 (1344)
+|++.+. .-.||.|+|..|.|||| ||+.+|.+-- .-++.| .+.++. ..-.+.+.++.+++.....
T Consensus 363 ~ll~~ir--~n~vvvivgETGSGKTTQl~QyL~edGY---~~~GmI--GcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 363 QLLSVIR--ENQVVVIVGETGSGKTTQLAQYLYEDGY---ADNGMI--GCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHh--hCcEEEEEecCCCCchhhhHHHHHhccc---ccCCee--eecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 3444444 34799999999999986 5555554321 123333 344443 3445667777777543221
Q ss_pred -----c----------cHH-HHHHHHHHHHHcCCeEEEEEeCCCCcc-c----cccccCcCCCCCCceEEEEEecCh
Q 000701 236 -----E----------TVS-RRASRLYERLKEEKKILVVLDNLWKCL-N----LETVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 236 -----~----------~~~-~~~~~l~~~l~~~~~~LlvlDdv~~~~-~----~~~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
. ++. -..+.+.+... .+--.+|+|++.+.. . +.-+...+ .....-|+|||+-.-
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L-~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm 510 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDL-DKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATM 510 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhh-hheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeeccc
Confidence 0 011 11122333333 567789999987652 1 11111111 223467899998643
No 481
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.86 E-value=0.14 Score=53.61 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHHHhccccccc-------cHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAEKLGLILHEE-------TVSRRASRL 245 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~l 245 (1344)
..+++.|.|+.|.||||+.+.++...--. ....+++... ... .+.+.|...++...... .....+..+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999999887432110 0001111110 000 12222222222211100 001112222
Q ss_pred HHHHHcCCeEEEEEeCCCCc---cc----cccccCcCCCCCCceEEEEEecChHHHHhhC
Q 000701 246 YERLKEEKKILVVLDNLWKC---LN----LETVGIPYGDDHKGCKILLTSRDRSVLLKMG 298 (1344)
Q Consensus 246 ~~~l~~~~~~LlvlDdv~~~---~~----~~~l~~~l~~~~~~~~iivTtR~~~v~~~~~ 298 (1344)
... ..++-|+++|+.... .+ ...+...+.. .+..+|+||....++....
T Consensus 103 l~~--~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDY--ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHh--cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 221 256789999997443 11 1122222222 3778999999988887544
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.84 E-value=0.58 Score=47.57 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
....+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999988654
No 483
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.81 E-value=0.79 Score=51.24 Aligned_cols=90 Identities=21% Similarity=0.387 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcC-CCCCHHHHHHHHHHHhccc-------cccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVS-QTPNIKDIQKEIAEKLGLI-------LHEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 239 (1344)
.....++|+|..|+|||||++.++.... -+..+..-+. ...+..++.......-+.. ..++...
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3456899999999999999998886543 2333333333 3345566555554432211 1111111
Q ss_pred --HHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. +++.+|+++||+-..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11223444443 589999999998543
No 484
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.81 E-value=0.16 Score=51.19 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 177 IGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 177 i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
|.|+|.+|+||||+++.++...+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998854
No 485
>PRK14531 adenylate kinase; Provisional
Probab=91.77 E-value=0.52 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
..|.|.|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 486
>PRK05922 type III secretion system ATPase; Validated
Probab=91.73 E-value=0.8 Score=53.16 Aligned_cols=90 Identities=22% Similarity=0.376 Sum_probs=52.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCC-CCCHHHHHHHHHHHhcccc-------ccccHH----
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQ-TPNIKDIQKEIAEKLGLIL-------HEETVS---- 239 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~---- 239 (1344)
.+...++|.|+.|+|||||++.++.... .+..+++.+++ .....+++.+......... .++...
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 4456799999999999999998886542 23333333333 2334455555443322111 111111
Q ss_pred --HHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000701 240 --RRASRLYERLK-EEKKILVVLDNLWKC 265 (1344)
Q Consensus 240 --~~~~~l~~~l~-~~~~~LlvlDdv~~~ 265 (1344)
..+..+.+++. +++++|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12234555553 589999999998644
No 487
>PRK14529 adenylate kinase; Provisional
Probab=91.73 E-value=0.5 Score=49.79 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-E-EEEEEcCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHcCC
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFD-Q-VVFSEVSQTPNIKDIQKEIAEKLGLILHEETVSRRASRLYERLKEEK 253 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 253 (1344)
.|.|.|++|+||||+|+.++...... +.. + .+.-.+..........++++.. |. -..++-....+.+++.+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~-G~---lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR-GD---LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc-cC---cchHHHHHHHHHHHHhccC
Confidence 37899999999999999999887532 121 1 1111122222222333333322 11 1122233344555664322
Q ss_pred eEEEEEeCCCCc
Q 000701 254 KILVVLDNLWKC 265 (1344)
Q Consensus 254 ~~LlvlDdv~~~ 265 (1344)
..=+|||+.-..
T Consensus 77 ~~g~iLDGfPRt 88 (223)
T PRK14529 77 KNGWLLDGFPRN 88 (223)
T ss_pred CCcEEEeCCCCC
Confidence 455889987543
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.70 E-value=0.15 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 175 GIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 175 ~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.+++|+|+.|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 489
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.69 E-value=0.14 Score=50.77 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
+|+|.|++|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 490
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.68 E-value=0.27 Score=48.76 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSE 211 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1344)
+++|+|+.|+||||++..+....+.+ .+...+.-.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 58999999999999999999988754 354444433
No 491
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.65 E-value=0.36 Score=53.78 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 224 (1344)
.+++.+.|.|||||||+|...+-.....+ ..++-++..+..+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999888877654 44777777776666665544
No 492
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.62 E-value=1.4 Score=48.04 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEcCCCCCHHHHHHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVVFSEVSQTPNIKDIQKEIAE 227 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 227 (1344)
...++.|.|++|+|||+++.+++........ ..++|++... +.+++...+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHH
Confidence 3468999999999999999999887664422 3467776644 55666666643
No 493
>PRK13948 shikimate kinase; Provisional
Probab=91.53 E-value=0.4 Score=48.95 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHh
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAK 199 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~ 199 (1344)
.....|+++|+.|+||||+++.++....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998775
No 494
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.51 E-value=0.14 Score=53.71 Aligned_cols=23 Identities=43% Similarity=0.666 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 495
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.48 E-value=0.14 Score=50.90 Aligned_cols=23 Identities=48% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 496
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=91.47 E-value=1.1 Score=52.76 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC--EEEEEEcCCCC-CHHHHHHHHHHHhcccc-------ccccH---
Q 000701 172 ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFD--QVVFSEVSQTP-NIKDIQKEIAEKLGLIL-------HEETV--- 238 (1344)
Q Consensus 172 ~~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~--- 238 (1344)
.....++|.|..|+|||+|+..+++.......+. .++++-+++.. .+.++...+...=.... .++..
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 3456899999999999999999998765331121 56677776544 46666666653321110 11111
Q ss_pred ---HHHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000701 239 ---SRRASRLYERLK--EEKKILVVLDNLWKC 265 (1344)
Q Consensus 239 ---~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 265 (1344)
...+..+.+++. ++++.|+++||+-..
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 122334666665 589999999998543
No 497
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.47 E-value=0.27 Score=49.53 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=31.2
Q ss_pred ccchHHHHHHHHHHHH--cCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 000701 155 FESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQ 197 (1344)
Q Consensus 155 ~~gR~~~~~~l~~~l~--~~~~~~i~I~G~~G~GKTtLa~~v~~~ 197 (1344)
++|....++++.+.+. .....-|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3677777777777776 233456779999999999999999873
No 498
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.45 E-value=0.22 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 000701 176 IIGVYGMGGIGKTTLVKAVARQAKE 200 (1344)
Q Consensus 176 ~i~I~G~~G~GKTtLa~~v~~~~~~ 200 (1344)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 499
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.45 E-value=0.2 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 000701 174 AGIIGVYGMGGIGKTTLVKAVARQA 198 (1344)
Q Consensus 174 ~~~i~I~G~~G~GKTtLa~~v~~~~ 198 (1344)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999888766
No 500
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.45 E-value=1 Score=45.82 Aligned_cols=119 Identities=23% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEE-EEEcCCCCCHHHHHHHHH--H--Hhccc--cccc---cHHHHH
Q 000701 173 NAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQVV-FSEVSQTPNIKDIQKEIA--E--KLGLI--LHEE---TVSRRA 242 (1344)
Q Consensus 173 ~~~~i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~--~--~l~~~--~~~~---~~~~~~ 242 (1344)
....|.|+|..|-||||.|.-.+-+......--.++ |+.-.........++.+- . ..+.. +... .....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 457899999999999999999887765432211111 333222233444443321 0 00110 0001 111122
Q ss_pred ----HHHHHHHHcCCeEEEEEeCCCCcc-----ccccccCcCCCCCCceEEEEEecCh
Q 000701 243 ----SRLYERLKEEKKILVVLDNLWKCL-----NLETVGIPYGDDHKGCKILLTSRDR 291 (1344)
Q Consensus 243 ----~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~~~~iivTtR~~ 291 (1344)
....+.+..++-=++|||++-..- ..+++...+....++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 223333434666799999985442 2334444444455677899999976
Done!