Query 000701
Match_columns 1344
No_of_seqs 456 out of 6247
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 15:55:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000701.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_474-477//hhsearch_pdb/000701hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 385.6 15.6 307 156-483 131-472 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 348.7 27.2 623 549-1304 73-745 (768)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 346.1 27.5 311 148-482 119-452 (1249)
4 3rgz_A Protein brassinosteroid 1.0 1 1 340.0 26.7 626 504-1272 51-741 (768)
5 1vt4_I APAF-1 related killer D 1.0 1 1 319.9 21.0 281 154-475 129-436 (1221)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 306.7 34.9 574 509-1230 9-595 (680)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 292.9 33.0 578 503-1231 25-621 (680)
8 1z6t_A APAF-1, apoptotic prote 1.0 1 1 292.9 28.0 307 149-480 120-450 (591)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 287.1 30.0 530 509-1270 16-557 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 285.1 28.0 170 509-694 17-192 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=385.59 Aligned_cols=307 Identities=13% Similarity=0.080 Sum_probs=243.4
Q ss_pred CCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCHHHHHHHHHH--HHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHH
Q ss_conf 12098999999998719---973999991899948899999999--98422899889999928999--999999999999
Q 000701 156 ESRFSTLRDIRNALTNA---NAGIIGVYGMGGIGKTTLVKAVAR--QAKERKLFDQVVFSEVSQTP--NIKDIQKEIAEK 228 (1344)
Q Consensus 156 ~gR~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 228 (1344)
|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.. +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCC
Q ss_conf 535445--------3317999999999998398-1999992999853201126767899982389998258678873099
Q 000701 229 LGLILH--------EETVSRRASRLYERLKEEK-KILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLKMGS 299 (1344)
Q Consensus 229 l~~~~~--------~~~~~~~~~~l~~~l~~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~~~ 299 (1344)
++.... ..+.......+.+.+. ++ |+||||||||+.+++ .+. ..+||+||||||++.++..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CCC-----CCCCCEEEEECCCHHHHHHCCC
T ss_conf 853755345555331469999999999976-898489999799971441-543-----2699889997497799997088
Q ss_pred C-CCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9-949846999999999999981999888303999999999929985999999999941999999999998619999986
Q 000701 300 A-PPFLIGVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLRAPSSVNF 378 (1344)
Q Consensus 300 ~-~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 378 (1344)
. ..|+|++|+.+++|+||.+.++....+++..+++++|+++|+|+|||++++|+.++.+. ++|...+.......
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~---- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR---- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH----
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCC----
T ss_conf 9738989998989999999987448998556899999999995998399999999844344-89998757876136----
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHH-----------HCCCCCCCCCHHHHHHHHHHH--CCCCCC---CCHHHHHHH
Q ss_conf 6642879999999870589802799998-----------313369887956799887730--000133---307999999
Q 000701 379 EGISAEAYSAIDLSIKYLRGDKLRKILL-----------LCSLMGNRIATSDLFKYCMGW--GILKGV---NKMADARIK 442 (1344)
Q Consensus 379 ~~~~~~i~~~l~~sy~~L~~~~~k~c~~-----------~~s~fp~~~~~~~li~~w~~~--g~~~~~---~~~~~~~~~ 442 (1344)
....+..++.+||+.||+ ++|.||+ |||+||++.+.. +++|+++ |++... ...+++++
T Consensus 359 --~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-
T ss_pred --CHHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHH-
T ss_conf --477789897516202267-999997526522336743235608997666--53311013550026778999999999-
Q ss_pred HHHHHHHHHHCCCCEECC--CCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 999999986525410039--99929974899999999660688
Q 000701 443 LDALVQELRDSSLLLAGD--NNEELSMHDIVRDVATSTACHDQ 483 (1344)
Q Consensus 443 ~~~~l~~L~~~~li~~~~--~~~~~~~h~li~~~~~~~~~~~~ 483 (1344)
++++|+++||++... ....|+|||+||+||++++.+++
T Consensus 433 ---~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 ---RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ---HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ---HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf ---9999987588367147980499967699999999988989
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=348.69 Aligned_cols=623 Identities=14% Similarity=0.045 Sum_probs=317.0
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-C-C--CCCCCCCCCEEECCCCCCC-CCCHHH-HCCCC
Q ss_conf 813986529970798888677111157798688758877777-2-1--0135434553546368785-567442-05574
Q 000701 549 FKEMRMLRVVGFSKMQLSSLPSSMDLLVNLQTLSLDQSMLGD-I-A--IIGKLKNLEILSMINSDIV-KLPEAF-GLLTK 622 (1344)
Q Consensus 549 f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-l-~--~i~~L~~L~~L~l~~~~l~-~lp~~i-~~L~~ 622 (1344)
|..+++|++++++.+.+..+|..++++.+|++|+|++|.+.. + . .++++.+|++|++++|.+. ..|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCHHH---HCCCCCCCEEECCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 5488044554323239044---3037768789820244231012444534445513314999996999890789888885
Q 000701 623 LRLLDLTDCFQLKVIAPNV---LSSLIRLEELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDILPEG 699 (1344)
Q Consensus 623 L~~L~l~~~~~l~~~~~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~~~~~~ 699 (1344)
|++|++++| .+...++.. ++++++|++|++.+|.+... ..+..+++|+.|+++.+......+.
T Consensus 153 L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~l~~L~~L~Ls~n~l~~~~~~ 218 (768)
T 3rgz_A 153 LEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGD-------------VDVSRCVNLEFLDVSSNNFSTGIPF 218 (768)
T ss_dssp CSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESC-------------CBCTTCTTCCEEECCSSCCCSCCCB
T ss_pred CCEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCCCCC-------------CCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 998989798-35885871556643589889898978803465-------------7845478689898928827887711
Q ss_pred C-CCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCEEECCCCCEEECCCCCCCHHHCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 4-435675369993488887864512314223675325312630624214665601210588755335564489871596
Q 000701 700 F-FSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCD 778 (1344)
Q Consensus 700 ~-~~~~L~~L~l~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~ 778 (1344)
+ ..++|+.|++..+..... ....+..+++|+.|.+.++.....+ +...+++|+.|++.+|.
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~-------------~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD-------------FSRAISTCTELKLLNISSNQFVGPI-----PPLPLKSLQYLSLAENK 280 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC-------------HHHHTTTCSSCCEEECCSSCCEESC-----CCCCCTTCCEEECCSSE
T ss_pred CCCCCCCCEEECCCCCCCCC-------------CCHHHHCCCCCCEEECCCCCCCCCC-----CCCCCCCCCEEECCCCC
T ss_conf 12699999897948858781-------------6577744888898989888665716-----72436878989791785
Q ss_pred CCHHHHHHHHHCC-CCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8701001221034-998349998037532333023453444667755555456536674378876323346887898887
Q 000701 779 KLSNIFLLSATNC-LPGLERIAVIDCSNMEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASS 857 (1344)
Q Consensus 779 ~l~~l~~l~~~~~-l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 857 (1344)
....++ ..+.. +++|++|.+++|.....++.. ...+++|+.|.+.++.-...++...
T Consensus 281 l~~~ip--~~~~~~~~~L~~L~Ls~n~l~~~~p~~-------------~~~l~~L~~L~L~~n~l~~~ip~~~------- 338 (768)
T 3rgz_A 281 FTGEIP--DFLSGACDTLTGLDLSGNHFYGAVPPF-------------FGSCSLLESLALSSNNFSGELPMDT------- 338 (768)
T ss_dssp EEESCC--CCSCTTCTTCSEEECCSSEEEECCCGG-------------GGGCTTCCEEECCSSEEEEECCHHH-------
T ss_pred CCCCCC--HHHHHHCCCCCEEECCCCCCCCCCCHH-------------HHCCCCCCEEECCCCCCCCCCCHHH-------
T ss_conf 577258--888844686889989689677842367-------------7558776677897885257379788-------
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEECCCCCCCCCCCC--CCCCCEEEECCCC
Q ss_conf 54333555430251136775334456632333323355-42222333321100136889887633--5543299881258
Q 000701 858 NRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLP-NLEALELYKINLEKIWHSQLPAMFPG--FQSLTRLIVCRCF 934 (1344)
Q Consensus 858 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~~~~~--l~~L~~L~l~~c~ 934 (1344)
...+++|+.+.+++|..... .+ ..+..++ +|+.|++++|.++.... ..+.. +++|+.|++++|.
T Consensus 339 --l~~l~~L~~L~Ls~n~l~~~-----~p--~~l~~l~~~L~~L~Ls~N~l~~~~~----~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 339 --LLKMRGLKVLDLSFNEFSGE-----LP--ESLTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp --HTTCTTCCEEECCSSEEEEC-----CC--TTHHHHTTTCSEEECCSSEEEEECC----TTTTCSTTCCCCEEECCSSE
T ss_pred --HHCCCCCCEEECCCCCCCCC-----CC--HHHHHHHCCCCEEECCCCCCCCCCC----HHHHHCCCCCCCEEECCCCC
T ss_conf --72488887884847843762-----30--9898632277199862787478767----66653324776189897784
Q ss_pred CCCCCCCHHHHHCHHCCCEEEECCCCCCCCEECCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 73302660145302002767560431232101013655568722124446100254655543357654457898663575
Q 000701 935 NLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNPCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQV 1014 (1344)
Q Consensus 935 ~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~~L~~L~l 1014 (1344)
++...+ ..+..+++|+.|++++|.....+.. ....+++|+.|.+.+|.....++... ..+++|++|++
T Consensus 406 -l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L 473 (768)
T 3rgz_A 406 -FTGKIP-PTLSNCSELVSLHLSFNYLSGTIPS--------SLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLIL 473 (768)
T ss_dssp -EEEECC-GGGGGCTTCCEEECCSSEEESCCCG--------GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred -CCCCCC-HHHHCCCCCCEEECCCCCCCCCCCH--------HHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEE
T ss_conf -654248-7775689879898958846685467--------77449988989897881547189788--28777329990
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 13898321123357899876772121245666410111022017666032121100246878664778529999919846
Q 000701 1015 CSCDKMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLA 1094 (1344)
Q Consensus 1015 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~l~ 1094 (1344)
++|.....+|..+ ..+++|++|++++|.+.+..+..+. .+++|+.|+++.++++
T Consensus 474 ~~N~l~~~~p~~l------------------------~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 474 DFNDLTGEIPSGL------------------------SNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGG------------------------GGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCE
T ss_pred CCCCCCCCCCHHH------------------------HCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCC
T ss_conf 1995137588788------------------------1699899897539951896876885--6899998989789433
Q ss_pred CCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCC-----------------------------------CCCCCC
Q ss_conf 444355896438963599990732167247874333444-----------------------------------322333
Q 000701 1095 AGFPVGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKHVD-----------------------------------VRKFAR 1139 (1344)
Q Consensus 1095 ~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 1139 (1344)
+..|..+ ..+++|+.|+++.+.+.+.+|...+...... ...+..
T Consensus 528 ~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 528 GNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred CCCCHHH-CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 7488777-088989989898884688279578604212232013454211113444322223322210013556323200
Q ss_pred CCEEECCCCCHHH-HHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 2335624502277-878510897530011201674224333112356776432356558988068885211223467431
Q 000701 1140 IKSLRLVCLNHLI-KYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCSVAKSL 1218 (1344)
Q Consensus 1140 L~~L~l~~l~~~~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~l 1218 (1344)
+..+.. .++. +.+.+..+..+..+++|+.|+++++.-...+|. .++.+++|+.|++++ ++++... |..+..+
T Consensus 607 l~~~~~---~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~-N~l~g~i-p~~l~~L 679 (768)
T 3rgz_A 607 LSTRNP---CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGH-NDISGSI-PDEVGDL 679 (768)
T ss_dssp GGGTCC---SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEEECCS-SCCCSCC-CGGGGGC
T ss_pred CCCCCC---CCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCC-CCCCCCC-CHHHHCC
T ss_conf 232110---01133100462743340335665797858801555877--884141578784868-8038878-9678477
Q ss_pred CCCCEEEECCCCCCEEEEECCCCCCCHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCEEECCCCC
Q ss_conf 01226877156563277404688995022203766278174164651668772202469986056378877134447888
Q 000701 1219 ERLVMLSISGCSAMRQVIIGCGQGDSDIAAANLKEEIVFSKLRYIGLLDLENLTSFCSGAANYTIKFPSLEDLSVTGCRN 1298 (1344)
Q Consensus 1219 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~sL~~L~i~~C~~ 1298 (1344)
++|+.|++++|.....+|..... +++|+.|++.+++--..+|.+. .+.++....+.++|.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~---------------l~~L~~L~ls~N~l~g~iP~~~-----~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSA---------------LTMLTEIDLSNNNLSGPIPEMG-----QFETFPPAKFLNNPG 739 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGG---------------CCCCSEEECCSSEEEEECCSSS-----SGGGSCGGGGCSCTE
T ss_pred CCCCEEECCCCCCCCCCCHHHHC---------------CCCCCEEECCCCCCCCCCCCCH-----HHCCCCHHHHCCCCH
T ss_conf 78998989788023868867757---------------8878978796881556089960-----102489777569832
Q ss_pred CCCCCC
Q ss_conf 755689
Q 000701 1299 MKIFTT 1304 (1344)
Q Consensus 1299 l~~~~~ 1304 (1344)
+...|.
T Consensus 740 Lcg~~l 745 (768)
T 3rgz_A 740 LCGYPL 745 (768)
T ss_dssp EESTTS
T ss_pred HCCCCC
T ss_conf 108877
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=346.09 Aligned_cols=311 Identities=22% Similarity=0.325 Sum_probs=242.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCC-CEEEEEECCCCCC--HHHH
Q ss_conf 88986562120989999999987--199739999918999488999999999842-2899-8899999289999--9999
Q 000701 148 SSTGYEAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKE-RKLF-DQVVFSEVSQTPN--IKDI 221 (1344)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~ 221 (1344)
.+.....|+||++++++|.++|. ++..++|+|+||||+||||||++++++.+. ..+| +.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 79998641257999999999986135887779999189888889999986075678862788179999788572679999
Q ss_pred HHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHH
Q ss_conf 9999999535445-----3317999999999998398--19999929998532011267678999823899982586788
Q 000701 222 QKEIAEKLGLILH-----EETVSRRASRLYERLKEEK--KILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVL 294 (1344)
Q Consensus 222 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~ 294 (1344)
+..++..+..... ..........+...+. ++ |+||||||+|+...|+.+ .+|++||||||++.++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHH
T ss_conf 9999998655303334788777899999999973-5678789999567997788763-------6897899992778998
Q ss_pred HH-HCCCCCEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 73-09999498469-99999999999981999888303999999999929985999999999941999999999998619
Q 000701 295 LK-MGSAPPFLIGV-LNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLRA 372 (1344)
Q Consensus 295 ~~-~~~~~~~~l~~-l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~ 372 (1344)
.. ......+++++ |+++|++++|...++.. .++..+.+++|+++|+|+||||+++|++|+.+. ..|..+++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHH
T ss_conf 76348843798258888788999999865798--134838899999984997799999999862480-579999999865
Q ss_pred CCCCCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999986----664287999999987058980279999831336988--79567998877300001333079999999999
Q 000701 373 PSSVNF----EGISAEAYSAIDLSIKYLRGDKLRKILLLCSLMGNR--IATSDLFKYCMGWGILKGVNKMADARIKLDAL 446 (1344)
Q Consensus 373 ~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~--~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~ 446 (1344)
...... ......+..++.+||+.|++ ++|.||+|||+||++ |+...++.+|.+++ .....+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~ 414 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDI 414 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHHHH
T ss_conf 044303465564467799999989986799-9999999728137997518999998858988------------899999
Q ss_pred HHHHHHCCCCEECCC--CCCEEECHHHHHHHHHHHCCC
Q ss_conf 999865254100399--992997489999999966068
Q 000701 447 VQELRDSSLLLAGDN--NEELSMHDIVRDVATSTACHD 482 (1344)
Q Consensus 447 l~~L~~~~li~~~~~--~~~~~~h~li~~~~~~~~~~~ 482 (1344)
+++|++++|++.... ..+|+||+++|+|++.++.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 99997446338963798118996689999987450678
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=340.03 Aligned_cols=626 Identities=16% Similarity=0.083 Sum_probs=383.8
Q ss_pred CCEEEEEEECCCCCC----CCC-CCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCC-CCCC--CCCCC
Q ss_conf 123679973499998----899-889999516651468986321256778813986529970798888-6771--11157
Q 000701 504 EKYYAISIIDSSIPE----LPE-GLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLS-SLPS--SMDLL 575 (1344)
Q Consensus 504 ~~~~~l~~~~~~~~~----l~~-~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~-~lp~--~i~~L 575 (1344)
+++. +.+....+.. ++. ...+..|+.+....+. ...+|.. |+.+++|++|+|++|.+. .+|. .++++
T Consensus 51 ~v~~-L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~---~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTS-IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---INGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEE-EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC---EEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred CEEE-EECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC---CCCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCC
T ss_conf 2789-8778998677557669657316802246786888---6787033-245788998989898578707896787278
Q ss_pred CCCCEEECCCCCCCCC--CC-CCCCCCCCEEECCCCCCCCCC-HH---HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
Q ss_conf 7986887588777772--10-135434553546368785567-44---20557454880445543232390443037768
Q 000701 576 VNLQTLSLDQSMLGDI--AI-IGKLKNLEILSMINSDIVKLP-EA---FGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRL 648 (1344)
Q Consensus 576 ~~L~~L~L~~~~i~~l--~~-i~~L~~L~~L~l~~~~l~~lp-~~---i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L 648 (1344)
.+|++|++++|.+... .. +.++.+|++|++++|.+...+ .. +.++++|++|++++| .+....+ ++.+.+|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L 202 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRCVNL 202 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--CTTCTTC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCC-CCCCCCC--CCCCCCC
T ss_conf 899989896882677479778563889998989798358858715566435898898989788-0346578--4547868
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEEEEECCCC-CCCCCC-CCCCCCEEEEEECCCCCCCCCCCEEC
Q ss_conf 7898202442310124445344455133149999969998907898-888854-43567536999348888786451231
Q 000701 649 EELYMRNCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDD-ILPEGF-FSRRLENFKISVGDAESVIPSEVLMA 726 (1344)
Q Consensus 649 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~l 726 (1344)
++|++.+|.+. . .+..++.+++|+.|+++++... .+|..+ ..++|+.|.+..+....
T Consensus 203 ~~L~Ls~n~l~-----------~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--------- 261 (768)
T 3rgz_A 203 EFLDVSSNNFS-----------T-GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--------- 261 (768)
T ss_dssp CEEECCSSCCC-----------S-CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE---------
T ss_pred CEEECCCCCCC-----------C-CCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC---------
T ss_conf 98989288278-----------8-77111269999989794885878165777448888989898886657---------
Q ss_pred CCCCCCCCCEEECCCCCEEECCCCCCCHHHCCCCCCCCC-CCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 422367532531263062421466560121058875533-5564489871596870100122103499834999803753
Q 000701 727 DDWASGTLNIYVWTSCKTLTLYNLINLERICSDPLKVES-FNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSN 805 (1344)
Q Consensus 727 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~l~~~~~l~~L~~L~l~~c~~ 805 (1344)
.... ..+++|+.|.+.++.....+ +..... +++|+.|++.+|.....++ ..++.+++|++|.+.+|..
T Consensus 262 -----~~~~-~~l~~L~~L~L~~n~l~~~i---p~~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 262 -----PIPP-LPLKSLQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp -----SCCC-CCCTTCCEEECCSSEEEESC---CCCSCTTCTTCSEEECCSSEEEECCC--GGGGGCTTCCEEECCSSEE
T ss_pred -----CCCC-CCCCCCCEEECCCCCCCCCC---CHHHHHHCCCCCEEECCCCCCCCCCC--HHHHCCCCCCEEECCCCCC
T ss_conf -----1672-43687898979178557725---88888446868899896896778423--6775587766778978852
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCC
Q ss_conf 23330234534446677555554565366743788763233468878988875433355-54302511367753344566
Q 000701 806 MEEIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQD-ELTGITLSNGISLEDSLHTS 884 (1344)
Q Consensus 806 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~ 884 (1344)
...++.. ....+++|+.|.+.++.-...++.. ...++ +|+.+.+++|.-....+..
T Consensus 331 ~~~ip~~------------~l~~l~~L~~L~Ls~n~l~~~~p~~----------l~~l~~~L~~L~Ls~N~l~~~~~~~- 387 (768)
T 3rgz_A 331 SGELPMD------------TLLKMRGLKVLDLSFNEFSGELPES----------LTNLSASLLTLDLSSNNFSGPILPN- 387 (768)
T ss_dssp EEECCHH------------HHTTCTTCCEEECCSSEEEECCCTT----------HHHHTTTCSEEECCSSEEEEECCTT-
T ss_pred CCCCCHH------------HHHCCCCCCEEECCCCCCCCCCCHH----------HHHHHCCCCEEECCCCCCCCCCCHH-
T ss_conf 5737978------------8724888878848478437623098----------9863227719986278747876766-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCHHCCCEEEECCCCCCCC
Q ss_conf 32333323355422223333211001368898876335543299881258733026601453020027675604312321
Q 000701 885 TPFFNEKVVLPNLEALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEE 964 (1344)
Q Consensus 885 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 964 (1344)
.....+++|+.|++++|.++.. ++..+..+++|+.|++++| .++...+ ..+..+++|+.|++++|.....
T Consensus 388 ----~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 388 ----LCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp ----TTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCCSC
T ss_pred ----HHHCCCCCCCEEECCCCCCCCC----CCHHHHCCCCCCEEECCCC-CCCCCCC-HHHHCCCCCCEEECCCCCCCCC
T ss_conf ----6533247761898977846542----4877756898798989588-4668546-7774499889898978815471
Q ss_pred EECCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01013655568722124446100254655543357654457898663575138983211233578998767721212456
Q 000701 965 IIYVEGADKVNPCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQ 1044 (1344)
Q Consensus 965 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1044 (1344)
+.. ....+++|+.|++.+|.....++.. +..+++|++|++++|.....+|..+
T Consensus 458 ~p~--------~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~~----------------- 510 (768)
T 3rgz_A 458 IPQ--------ELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWI----------------- 510 (768)
T ss_dssp CCG--------GGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGG-----------------
T ss_pred CCH--------HHCCCCCCEEEEECCCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCCCHHH-----------------
T ss_conf 897--------8828777329990199513758878--8169989989753995189687688-----------------
Q ss_pred CCCCHHHHHCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCEEE---------EE-
Q ss_conf 66410111022017666032121100246878664778529999919846444355896438963599---------99-
Q 000701 1045 QPLFFEEKIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLV---------LS- 1114 (1344)
Q Consensus 1045 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~---------i~- 1114 (1344)
..+++|++|++++|.+.+..+..+. .+++|+.|+++.+.+++..|..++. +..+..+. +.
T Consensus 511 -------~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 511 -------GRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp -------GGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEEC
T ss_pred -------HCCCCCCEEECCCCCCCCCCCHHHC--CCCCCCEEECCCCCCCCCCCHHHHC-CCCHHHHHCCCCCCCCCCCC
T ss_conf -------5689999898978943374887770--8898998989888468827957860-42122320134542111134
Q ss_pred ------------------------------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHC
Q ss_conf ------------------------------------07321672478743334443223332335624502277878510
Q 000701 1115 ------------------------------------CNSYEEIFSNEGCLEKHVDVRKFARIKSLRLVCLNHLIKYLLKQ 1158 (1344)
Q Consensus 1115 ------------------------------------c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~l~~~~~~l~~~ 1158 (1344)
.+.+....+ .....+++|+.|+++ +. .+.+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~--------~~~~~l~~L~~LdLs---~N--~l~g~ 647 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--------PTFDNNGSMMFLDMS---YN--MLSGY 647 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC--------CSCSSSBCCCEEECC---SS--CCBSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC--------HHHHCCCCCCEEECC---CC--CCCCC
T ss_conf 443222233222100135563232002321100113310046274--------334033566579785---88--01555
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEECCCCCCEEEEEC
Q ss_conf 89753001120167422433311235677643235655898806888521122346743101226877156563277404
Q 000701 1159 DSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCSVAKSLERLVMLSISGCSAMRQVIIG 1238 (1344)
Q Consensus 1159 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 1238 (1344)
+|..+..+++|+.|+++++.-...+|. .++.+++|+.|++++ ++++... |..+..+++|+.|++++|+....+|..
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~-N~l~g~i-p~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSS-NKLDGRI-PQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCS-SCCEECC-CGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCC-CCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 877884141578784868803887896--784777899898978-8023868-867757887897879688155608996
Q ss_pred CCCCCCHHHHHCCCCEEEECCCCEEEECCCCCCC
Q ss_conf 6889950222037662781741646516687722
Q 000701 1239 CGQGDSDIAAANLKEEIVFSKLRYIGLLDLENLT 1272 (1344)
Q Consensus 1239 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 1272 (1344)
. + +.++....+.++|.|-
T Consensus 724 ~-~---------------~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 724 G-Q---------------FETFPPAKFLNNPGLC 741 (768)
T ss_dssp S-S---------------GGGSCGGGGCSCTEEE
T ss_pred H-H---------------HCCCCHHHHCCCCHHC
T ss_conf 0-1---------------0248977756983210
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=319.86 Aligned_cols=281 Identities=21% Similarity=0.199 Sum_probs=221.5
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 621209899999999871-99739999918999488999999999842289988-9999928999999999999999535
Q 000701 154 AFESRFSTLRDIRNALTN-ANAGIIGVYGMGGIGKTTLVKAVARQAKERKLFDQ-VVFSEVSQTPNIKDIQKEIAEKLGL 231 (1344)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 231 (1344)
..+||+.++++|.++|.. +..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 77892899999999974358971899976999667999999997149887489938999828999999999999999862
Q ss_pred CC---C--C-------CCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf 44---5--3-------317999999999998--39819999929998532011267678999823899982586788730
Q 000701 232 IL---H--E-------ETVSRRASRLYERLK--EEKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLLKM 297 (1344)
Q Consensus 232 ~~---~--~-------~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~~~ 297 (1344)
.. . . .........+.+.+. .++|+||||||+|+.+.|+.+ . +||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----C---CCEEEEEECCCHHHHHHC
T ss_conf 272102200134679999999999999999850478879987186818999864----7---982999944373799866
Q ss_pred CCCCCEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CHHHHHHHHHH
Q ss_conf 999949846------9999999999999819998883039999999999299859999999999419--99999999998
Q 000701 298 GSAPPFLIG------VLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNR--SMREWKNALQQ 369 (1344)
Q Consensus 298 ~~~~~~~l~------~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--~~~~w~~~~~~ 369 (1344)
.....++++ +|+.+|+|+||.+..+.. . .++..++ |+|+||||+++|+.|+.+ +..+|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--8---9999999---6989999999999984889979998669---
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-HHHHHHCCCCCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 61999998666428799999998705898027-9999831336988--79567998877300001333079999999999
Q 000701 370 LRAPSSVNFEGISAEAYSAIDLSIKYLRGDKL-RKILLLCSLMGNR--IATSDLFKYCMGWGILKGVNKMADARIKLDAL 446 (1344)
Q Consensus 370 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~c~~~~s~fp~~--~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~ 446 (1344)
....+..++.+||+.|++ ++ |.||++||+||++ |+.+.++.+|+++|. + ....+
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~ 407 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVV 407 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHH
T ss_pred -----------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H----HHHHH
T ss_conf -----------861899999999984889-999999999717799998779999987667788-------9----99999
Q ss_pred HHHHHHCCCCEECCCCCCEEECHHHHHHH
Q ss_conf 99986525410039999299748999999
Q 000701 447 VQELRDSSLLLAGDNNEELSMHDIVRDVA 475 (1344)
Q Consensus 447 l~~L~~~~li~~~~~~~~~~~h~li~~~~ 475 (1344)
+++|+++||++..+...+|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 99999619889868999898609999985
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=306.66 Aligned_cols=574 Identities=18% Similarity=0.154 Sum_probs=316.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 997349999889988999951665146898632125677881398652997079888867-7111157798688758877
Q 000701 509 ISIIDSSIPELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSL-PSSMDLLVNLQTLSLDQSM 587 (1344)
Q Consensus 509 l~~~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 587 (1344)
+......+..+|... .++++.|.+.++. ...++...|.+++.|++|+++++.+..+ |..+.++.+|++|++++|.
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCCCC-CCCCCEEECCCCC---CCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 487779805264124-8887688898997---787597887178767588788996485697787406676888899985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECC
Q ss_conf 7772--10135434553546368785567-44205574548804455432323904430377687898202442310124
Q 000701 588 LGDI--AIIGKLKNLEILSMINSDIVKLP-EAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRG 664 (1344)
Q Consensus 588 i~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 664 (1344)
+..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++| .+...+...++++++|++|++.+|.+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 159 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA---- 159 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCCC----
T ss_conf 67568545303888898989899668539667415678888989899-5246672111245567779745884365----
Q ss_pred CCCCCCCCCHHHH--CCCCCCCEEEEEECCCCCCCCC-C-CCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCEEECC
Q ss_conf 4453444551331--4999996999890789888885-4-4356753699934888878645123142236753253126
Q 000701 665 VNTERSCAGLDEL--MHLPRLTSLEIDIGNDDILPEG-F-FSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWT 740 (1344)
Q Consensus 665 ~~~~~~~~~l~~L--~~l~~L~~L~i~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 740 (1344)
.....+ ..+++|+.|+++.+....++.. + ...+|+.+.+..+... +.. . .........+
T Consensus 160 -------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---~~~---~----~~~~~~l~~~ 222 (680)
T 1ziw_A 160 -------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSL---T----EKLCLELANT 222 (680)
T ss_dssp -------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH---HHH---H----HHHHHHHTTS
T ss_pred -------CCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---HHH---H----HHHHHHHHHC
T ss_conf -------2978862446663217988898256558155532234455430566468---056---7----7787775315
Q ss_pred CCCEEECCCCCCCHHHCCCCCCCCCC--CCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCCCCCCCC
Q ss_conf 30624214665601210588755335--5644898715968701001221034998349998037532333023453444
Q 000701 741 SCKTLTLYNLINLERICSDPLKVESF--NELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNMEEIFAVSGEADI 818 (1344)
Q Consensus 741 ~L~~L~l~~~~~l~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 818 (1344)
+|+.|.+.++.... .. +..+..+ ++|+.|++.+|. +..+.+ ..+..+++|+.|.+.++... .+..
T Consensus 223 ~L~~L~L~~n~l~~-~~--~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~------- 289 (680)
T 1ziw_A 223 SIRNLSLSNSQLST-TS--NTTFLGLKWTNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNNIQ-HLFS------- 289 (680)
T ss_dssp CCCEEECTTSCCCE-EC--TTTTGGGGGSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSCCBS-EECT-------
T ss_pred CCCEEECCCCCCCC-CC--HHHHHCCCCCCCCEEECCCCC-CCCCCC-CCCCCCCCCCEEECCCCCCC-CCCH-------
T ss_conf 10088745774364-68--667514676778887787887-675680-21167410568557788567-6586-------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66775555545653667437887632334688789888754333555430251136775334456632333323355422
Q 000701 819 NNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLE 898 (1344)
Q Consensus 819 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~ 898 (1344)
.....+++|+.|.+.++..-..+... .+|.+.. ..+..+++|+
T Consensus 290 -----~~~~~l~~L~~L~L~~~~~~~~~~~~------------~lp~i~~--------------------~~~~~l~~L~ 332 (680)
T 1ziw_A 290 -----HSLHGLFNVRYLNLKRSFTKQSISLA------------SLPKIDD--------------------FSFQWLKCLE 332 (680)
T ss_dssp -----TTTTTCTTCCEEECTTCBCCC------------------CCEECT--------------------TTTTTCTTCC
T ss_pred -----HHHCCCCCCCEEECCCHHHHCCCCCC------------CCCCCCH--------------------HHCCCCCCCC
T ss_conf -----56267888557736331321333335------------5454386--------------------5624677788
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC-CCCCCCCHHHHHCH--HCCCEEEECCCCCCCCEECCCCCCCCC
Q ss_conf 223333211001368898876335543299881258-73302660145302--002767560431232101013655568
Q 000701 899 ALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCF-NLKYIFSASMLRSI--EQLQHLEIHDCISLEEIIYVEGADKVN 975 (1344)
Q Consensus 899 ~L~l~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~-~L~~l~~~~~l~~l--~~L~~L~l~~c~~l~~l~~~~~~~~~~ 975 (1344)
.|++++|.++.+.. ..+..+++|++|++++|. .+..++. ..+..+ ++|+.|++++|. +..+.. .
T Consensus 333 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~-~~f~~~~~~~L~~L~L~~n~-l~~~~~-------~ 399 (680)
T 1ziw_A 333 HLNMEDNDIPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTN-ETFVSLAHSPLHILNLTKNK-ISKIES-------D 399 (680)
T ss_dssp EEECCSCCBCCCCT----TTTTTCTTCCEEECTTCBSCCCEECT-TTTGGGTTSCCCEEECTTSC-CCEECT-------T
T ss_pred EEECCCCCCCCCCH----HHHCCCCCCCEEECCCCCHHHHHCCH-HHHCCCCCCCCCEEECCCCC-CCEECH-------H
T ss_conf 88798982687885----57406568728988798014432353-22024556867668899997-776775-------4
Q ss_pred CEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 72212444610025465554335765445789866357513898321123357899876772121245666410111022
Q 000701 976 PCFIFQRLTSLRLLRLPELRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFT 1055 (1344)
Q Consensus 976 ~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1344)
....+++|+.|++.++.....++... +..+++|++|++++|......+..+ ..++
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------~~~~ 454 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQE-WRGLENIFEIYLSYNKYLQLTRNSF------------------------ALVP 454 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGG-GTTCTTCCEEECCSCSEEECCTTTT------------------------TTCT
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCEECHHHH------------------------HCCC
T ss_conf 42077888888677875754357553-2575461278448997542276455------------------------0075
Q ss_pred CHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCC
Q ss_conf 01766603212110024687866477852999991984644435589643896359999073216724787433344432
Q 000701 1056 NLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKHVDVR 1135 (1344)
Q Consensus 1056 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~~~ 1135 (1344)
+|+.|++++|.+............+++|+.|+++.++++...+ ..+.++++|+.|+++.+.+..+.+ ..++.
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~------ 526 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWK-HANPG------ 526 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGS-TTSTT------
T ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCH-HHCCC------
T ss_conf 4310110146442256677645557878999899998776794-463455346888588997300000-00467------
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 23332335624502277878510897530011201674224333112356776432356558988068885211223467
Q 000701 1136 KFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCSVA 1215 (1344)
Q Consensus 1136 ~~~~L~~L~l~~l~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~ 1215 (1344)
.....+..+++|+.|++++ +.++.+++ ..+..+++|+.|++++ ++++.++ +..+
T Consensus 527 ----------------------~~~~~~~~l~~L~~L~L~~-N~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~l~-~~~~ 580 (680)
T 1ziw_A 527 ----------------------GPIYFLKGLSHLHILNLES-NGFDEIPV-EVFKDLFELKIIDLGL-NNLNTLP-ASVF 580 (680)
T ss_dssp ----------------------SCCCTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCS-SCCCCCC-TTTT
T ss_pred ----------------------CCCHHHCCCCCCCEEECCC-CCCCCCCH-HHCCCCCCCCEEECCC-CCCCCCC-HHHH
T ss_conf ----------------------7414233799888888999-97887797-7734666752238999-9777679-7683
Q ss_pred HHHCCCCEEEECCCC
Q ss_conf 431012268771565
Q 000701 1216 KSLERLVMLSISGCS 1230 (1344)
Q Consensus 1216 ~~l~~L~~L~i~~c~ 1230 (1344)
..+++|+.|++++|.
T Consensus 581 ~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred CCCCCCCEEECCCCC
T ss_conf 789888889899996
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=292.93 Aligned_cols=578 Identities=16% Similarity=0.157 Sum_probs=303.0
Q ss_pred HCCEEEEEEECCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCC
Q ss_conf 1123679973499998899--8899995166514689863212567788139865299707988886771-111577986
Q 000701 503 LEKYYAISIIDSSIPELPE--GLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSLPS-SMDLLVNLQ 579 (1344)
Q Consensus 503 ~~~~~~l~~~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 579 (1344)
++.++ +.+..+.+..++. ...+++|++|.+.++. ...++...|++++.|++|++++|.+..+|. .|.++.+|+
T Consensus 25 ~~l~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITV-LNLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSE-EECCSSCCCCCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCE-EECCCCCCCCCCHHHHHCCCCCCEEECCCCC---CCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 88768-8898997787597887178767588788996---4856977874066768888999856756854530388889
Q ss_pred EEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHHC--CCCCCCEEECC
Q ss_conf 887588777772--10135434553546368785567-44205574548804455432323904430--37768789820
Q 000701 580 TLSLDQSMLGDI--AIIGKLKNLEILSMINSDIVKLP-EAFGLLTKLRLLDLTDCFQLKVIAPNVLS--SLIRLEELYMR 654 (1344)
Q Consensus 580 ~L~L~~~~i~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~--~L~~L~~L~l~ 654 (1344)
+|++++|.+..+ ..++++.+|++|++++|.+...+ ..++++++|++|++++| .++.++...++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCCEEECC
T ss_conf 8989899668539667415678888989899524667211124556777974588-436529788624466632179888
Q ss_pred CCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCC-----CCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCC
Q ss_conf 24423101244453444551331499999699989078988-----8885443567536999348888786451231422
Q 000701 655 NCFVQWEVRGVNTERSCAGLDELMHLPRLTSLEIDIGNDDI-----LPEGFFSRRLENFKISVGDAESVIPSEVLMADDW 729 (1344)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~i~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~l 729 (1344)
+|.+. ......+..+.+|+.+.+..+.... ++..+...+|+.|.+..+......
T Consensus 180 ~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~---------- 238 (680)
T 1ziw_A 180 SNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS---------- 238 (680)
T ss_dssp TCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC----------
T ss_pred CCCCC-----------CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC----------
T ss_conf 98256-----------558155532234455430566468056777877753151008874577436468----------
Q ss_pred CCCCCCEEE--CCCCCEEECCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCHH
Q ss_conf 367532531--263062421466560121058875533556448987159687010012210349983499980375323
Q 000701 730 ASGTLNIYV--WTSCKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCSNME 807 (1344)
Q Consensus 730 ~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~~~~l~~L~~L~l~~c~~l~ 807 (1344)
...+.. .++|+.|++.++.. ..+ .+.....+++|+.|++.++. +....+ ..+..+++|+.|.+.++....
T Consensus 239 ---~~~~~~l~~~~L~~L~Ls~n~l-~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 239 ---NTTFLGLKWTNLTMLDLSYNNL-NVV--GNDSFAWLPQLEYFFLEYNN-IQHLFS-HSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp ---TTTTGGGGGSCCCEEECTTSCC-CEE--CTTTTTTCTTCCEEECCSCC-BSEECT-TTTTTCTTCCEEECTTCBCCC
T ss_pred ---HHHHHCCCCCCCCEEECCCCCC-CCC--CCCCCCCCCCCCEEECCCCC-CCCCCH-HHHCCCCCCCEEECCCHHHHC
T ss_conf ---6675146767788877878876-756--80211674105685577885-676586-562678885577363313213
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCC
Q ss_conf 3302345344466775555545653667437887632334688789888754333555430251136775-334456632
Q 000701 808 EIFAVSGEADINNNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISL-EDSLHTSTP 886 (1344)
Q Consensus 808 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~ 886 (1344)
.+... ............+++|+.|.+.++. +..+.... ...+++|+.+.+++|..- .......
T Consensus 311 ~~~~~----~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------~~~l~~L~~L~Ls~n~~~~~~l~~~~-- 374 (680)
T 1ziw_A 311 SISLA----SLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNM---------FTGLINLKYLSLSNSFTSLRTLTNET-- 374 (680)
T ss_dssp ----------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTT---------TTTCTTCCEEECTTCBSCCCEECTTT--
T ss_pred CCCCC----CCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHH---------HCCCCCCCEEECCCCCHHHHHCCHHH--
T ss_conf 33335----5454386562467778888798982-68788557---------40656872898879801443235322--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCHHCCCEEEECCCCCCCCEE
Q ss_conf 33332335542222333321100136889887633554329988125873302660145302002767560431232101
Q 000701 887 FFNEKVVLPNLEALELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEII 966 (1344)
Q Consensus 887 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~ 966 (1344)
+. ....++|+.|++++|.++.+.. ..+..+++|+.|++++|. +....+...+..+++|+.|++++|.. ..+.
T Consensus 375 -f~-~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~ 446 (680)
T 1ziw_A 375 -FV-SLAHSPLHILNLTKNKISKIES----DAFSWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKY-LQLT 446 (680)
T ss_dssp -TG-GGTTSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSE-EECC
T ss_pred -HC-CCCCCCCCEEECCCCCCCEECH----HHHHCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCEEECCCCCC-CEEC
T ss_conf -02-4556867668899997776775----442077888888677875-75435755325754612784489975-4227
Q ss_pred CCCCCCCCCCEEECCCCCCEECCCCCC--CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 013655568722124446100254655--543357654457898663575138983211233578998767721212456
Q 000701 967 YVEGADKVNPCFIFQRLTSLRLLRLPE--LRCLYPRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQ 1044 (1344)
Q Consensus 967 ~~~~~~~~~~~~~~~~L~~L~l~~~~~--L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1044 (1344)
. .....+++|+.|.+.++.. +...+.. +..+++|+.|++++|. ++.++...
T Consensus 447 ~-------~~~~~~~~L~~L~l~~n~l~~~~~~p~~--~~~l~~L~~L~Ls~N~-l~~i~~~~----------------- 499 (680)
T 1ziw_A 447 R-------NSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNN-IANINDDM----------------- 499 (680)
T ss_dssp T-------TTTTTCTTCCEEECTTSCCBCTTCSSCT--TTTCTTCCEEECCSSC-CCCCCTTT-----------------
T ss_pred H-------HHHHCCCCCCCCHHCCCCCCCCCCCCCC--CCCCCCCCEEECCCCC-CCCCCHHH-----------------
T ss_conf 6-------4550075431011014644225667764--5557878999899998-77679446-----------------
Q ss_pred CCCCHHHHHCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECC
Q ss_conf 66410111022017666032121100246878664778529999919846444355896438963599990732167247
Q 000701 1045 QPLFFEEKIFTNLEEVALSRKDIMLILQGNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSN 1124 (1344)
Q Consensus 1045 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~ 1124 (1344)
...+++|++|++++|.+..++...++.. +...+.++++|+.|+++.+.+.. ++.
T Consensus 500 ------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------~~~~~~~l~~L~~L~L~~N~l~~-i~~ 553 (680)
T 1ziw_A 500 ------LEGLEKLEILDLQHNNLARLWKHANPGG-------------------PIYFLKGLSHLHILNLESNGFDE-IPV 553 (680)
T ss_dssp ------TTTCTTCCEEECCSSCCGGGGSTTSTTS-------------------CCCTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred ------HCCCCCCCEEECCCCCCCCCCHHHCCCC-------------------CCHHHCCCCCCCEEECCCCCCCC-CCH
T ss_conf ------3455346888588997300000004677-------------------41423379988888899997887-797
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 87433344432233323356245022778785108975300112016742243331123567764323565589880688
Q 000701 1125 EGCLEKHVDVRKFARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCE 1204 (1344)
Q Consensus 1125 ~~~~~~~~~~~~~~~L~~L~l~~l~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 1204 (1344)
.. +..+++|+.|++++ +.++.+++. .+..+++|+.|++++|
T Consensus 554 ~~------------------------------------~~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~L~~N- 594 (680)
T 1ziw_A 554 EV------------------------------------FKDLFELKIIDLGL-NNLNTLPAS-VFNNQVSLKSLNLQKN- 594 (680)
T ss_dssp TT------------------------------------TTTCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECTTS-
T ss_pred HH------------------------------------CCCCCCCCEEECCC-CCCCCCCHH-HHCCCCCCCEEECCCC-
T ss_conf 77------------------------------------34666752238999-977767976-8378988888989999-
Q ss_pred CCCCCCCHHHHH-HHCCCCEEEECCCCC
Q ss_conf 852112234674-310122687715656
Q 000701 1205 KLVSLVTCSVAK-SLERLVMLSISGCSA 1231 (1344)
Q Consensus 1205 ~l~~l~~~~~~~-~l~~L~~L~i~~c~~ 1231 (1344)
+++.+.+ ..+. .+++|+.|++++|+.
T Consensus 595 ~l~~~~~-~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 595 LITSVEK-KVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CCCBCCH-HHHHHHHTTCSEEECTTCCC
T ss_pred CCCCCCH-HHHCCCCCCCCEEECCCCCC
T ss_conf 6870596-68301146657798318970
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=292.91 Aligned_cols=307 Identities=21% Similarity=0.346 Sum_probs=230.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCC-CEEEEEECCCCCCHHHHHHH
Q ss_conf 8986562120989999999987--199739999918999488999999999842-2899-88999992899999999999
Q 000701 149 STGYEAFESRFSTLRDIRNALT--NANAGIIGVYGMGGIGKTTLVKAVARQAKE-RKLF-DQVVFSEVSQTPNIKDIQKE 224 (1344)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~ 224 (1344)
+.....|+||+.++++|.+++. .+..++|+|+||||+||||||++++++... +..| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred H---HHHHCCC-----CCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
Q ss_conf 9---9995354-----4533179999999999983-98199999299985320112676789998238999825867887
Q 000701 225 I---AEKLGLI-----LHEETVSRRASRLYERLKE-EKKILVVLDNLWKCLNLETVGIPYGDDHKGCKILLTSRDRSVLL 295 (1344)
Q Consensus 225 i---~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iivTtR~~~v~~ 295 (1344)
+ ...++.. ............+...+.. .+++|||+||+|+...++.+ .++++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHH
T ss_conf 99999985035565567998899999999999706799869998589987999876-------37986999898817777
Q ss_pred HHCCCCCEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 3099994984---6999999999999981999888303999999999929985999999999941999999999998619
Q 000701 296 KMGSAPPFLI---GVLNEEEAWRLFKMTAGDDVEHRELNSTARNVAMACGGLPIALTTIARALRNRSMREWKNALQQLRA 372 (1344)
Q Consensus 296 ~~~~~~~~~l---~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~ 372 (1344)
.+. ...+++ ++|+.+|++++|...++... ....+.+.+|+++|+|+|+|+.++|+.++... ..|..+++.+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred HCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 348-98268615889998999999998718983--10459999999995898379999999984484-359999999988
Q ss_pred CCCCC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99998----6664287999999987058980279999831336988--79567998877300001333079999999999
Q 000701 373 PSSVN----FEGISAEAYSAIDLSIKYLRGDKLRKILLLCSLMGNR--IATSDLFKYCMGWGILKGVNKMADARIKLDAL 446 (1344)
Q Consensus 373 ~~~~~----~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~--~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~ 446 (1344)
..... .......+..++..||+.|++ ..|.||.++|+||++ |+...+..+|.+.+ + ....+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~ 414 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDI 414 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH--------H----HHHHH
T ss_conf 689876511465437899999999986899-9999999745567998508999999966588--------9----99999
Q ss_pred HHHHHHCCCCEECC--CCCCEEECHHHHHHHHHHHC
Q ss_conf 99986525410039--99929974899999999660
Q 000701 447 VQELRDSSLLLAGD--NNEELSMHDIVRDVATSTAC 480 (1344)
Q Consensus 447 l~~L~~~~li~~~~--~~~~~~~h~li~~~~~~~~~ 480 (1344)
+++|++++|++... ...+|+||+++|++++....
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 999985958688548985679976899999986535
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=287.06 Aligned_cols=530 Identities=17% Similarity=0.176 Sum_probs=256.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 997349999889988999951665146898632125677881398652997079888867-7111157798688758877
Q 000701 509 ISIIDSSIPELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSL-PSSMDLLVNLQTLSLDQSM 587 (1344)
Q Consensus 509 l~~~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 587 (1344)
+...+..+..+|... .++++.|.+.++. ...++...|.++++|++|++++|.+..+ |..|.++.+|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCCCCCCCCC-CCCCCEEECCCCC---CCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 574688845189888-8876788788897---577375455577667488688773664397773060106886787985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCC--CCHHHHCCCCCCCEEECCCCCCCCEE
Q ss_conf 7772--10135434553546368785567-4420557454880445543232--39044303776878982024423101
Q 000701 588 LGDI--AIIGKLKNLEILSMINSDIVKLP-EAFGLLTKLRLLDLTDCFQLKV--IAPNVLSSLIRLEELYMRNCFVQWEV 662 (1344)
Q Consensus 588 i~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~~ 662 (1344)
+..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++| .+.. +|.. ++++++|++|++++|.+....
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEECHHH-HHHCCCCCEEECCCCCCEECC
T ss_conf 63048522078653788870377555445113489887798968788-5232530686-732677778876688531057
Q ss_pred CCCCCCCCCCCHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCEEECCC
Q ss_conf 24445344455133149999-96999890789888885443567536999348888786451231422367532531263
Q 000701 663 RGVNTERSCAGLDELMHLPR-LTSLEIDIGNDDILPEGFFSRRLENFKISVGDAESVIPSEVLMADDWASGTLNIYVWTS 741 (1344)
Q Consensus 663 ~~~~~~~~~~~l~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 741 (1344)
...+..+..++. +..|++..+....++..
T Consensus 170 --------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~------------------------------------------ 199 (606)
T 3vq2_A 170 --------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQ------------------------------------------ 199 (606)
T ss_dssp --------TTTTHHHHHCTTCCCEEECTTCCCCEECTT------------------------------------------
T ss_pred --------HHHHHHHHCCCCCCCEEECCCCCCCEECCC------------------------------------------
T ss_conf --------334121203420024300468975325711------------------------------------------
Q ss_pred CCEEECCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCC--CHHHHCCCCCCCCCC
Q ss_conf 062421466560121058875533556448987159687010012210349983499980375--323330234534446
Q 000701 742 CKTLTLYNLINLERICSDPLKVESFNELRTMKIENCDKLSNIFLLSATNCLPGLERIAVIDCS--NMEEIFAVSGEADIN 819 (1344)
Q Consensus 742 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~~~~l~~L~~L~l~~c~--~l~~l~~~~~~~~~~ 819 (1344)
.....+|+.|++.++.......+ ..+..+++|+.+.+.... ....+...
T Consensus 200 ---------------------~~~~~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~l~~~------- 250 (606)
T 3vq2_A 200 ---------------------AFQGIKLHELTLRGNFNSSNIMK-TCLQNLAGLHVHRLILGEFKDERNLEIF------- 250 (606)
T ss_dssp ---------------------TTTTCEEEEEEEESCCSCHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCC-------
T ss_pred ---------------------CCCCCEEEEEECCCCCCCHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf ---------------------05676043352467856166778-8860266565231411110367741026-------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67755555456536674378876323346887898887543335554302511367753344566323333233554222
Q 000701 820 NNNAIEKTDFAELKSLSLGNLPKLSSFCSEVKTPSASSNRQDLQDELTGITLSNGISLEDSLHTSTPFFNEKVVLPNLEA 899 (1344)
Q Consensus 820 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~l~~L~~ 899 (1344)
....+..+.. ..++.+.+..+..+.... ..+..+++|+.
T Consensus 251 -----~~~~~~~l~~-----------------------------l~l~~l~l~~~~~~~~~~-------~~~~~l~~L~~ 289 (606)
T 3vq2_A 251 -----EPSIMEGLCD-----------------------------VTIDEFRLTYTNDFSDDI-------VKFHCLANVSA 289 (606)
T ss_dssp -----CGGGGTTGGG-----------------------------SEEEEEEECCCTTCCGGG-------GSCGGGTTCSE
T ss_pred -----CHHHHHHHHH-----------------------------CCHHHEECCCCCCCCCCC-------CCCCCCCCCCE
T ss_conf -----8177666654-----------------------------347450123665555432-------22354887898
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCHHCCCEEEECCCCCCCCEECCCCCCCCCCEEE
Q ss_conf 23333211001368898876335543299881258733026601453020027675604312321010136555687221
Q 000701 900 LELYKINLEKIWHSQLPAMFPGFQSLTRLIVCRCFNLKYIFSASMLRSIEQLQHLEIHDCISLEEIIYVEGADKVNPCFI 979 (1344)
Q Consensus 900 L~l~~~~l~~~~~~~l~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 979 (1344)
|+++++.++.++ .+..+++|+.|++.+|. +..++. + .+++|+.|++++|..+..+ ....
T Consensus 290 L~l~~~~~~~l~------~l~~~~~L~~L~l~~n~-l~~lp~---~-~l~~L~~L~l~~n~~~~~~----------~~~~ 348 (606)
T 3vq2_A 290 MSLAGVSIKYLE------DVPKHFKWQSLSIIRCQ-LKQFPT---L-DLPFLKSLTLTMNKGSISF----------KKVA 348 (606)
T ss_dssp EEEESCCCCCCC------CCCTTCCCSEEEEESCC-CSSCCC---C-CCSSCCEEEEESCSSCEEC----------CCCC
T ss_pred EEECCCCCHHHH------HCCCCCCCCEEECCCCC-CCCCCC---C-CCCCCCEEECCCCCCCCCH----------HHCC
T ss_conf 771476604435------43340117789764666-765466---7-8875564454478685310----------0024
Q ss_pred CCCCCCEECCCCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHH
Q ss_conf 2444610025465554335-765445789866357513898321123357899876772121245666410111022017
Q 000701 980 FQRLTSLRLLRLPELRCLY-PRMHISKWPSLKTLQVCSCDKMKTFASELSSSGGNIDSNQLRISMQQPLFFEEKIFTNLE 1058 (1344)
Q Consensus 980 ~~~L~~L~l~~~~~L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1058 (1344)
+++|+.|+++++. +.... ....+..+++|++|++++|. +..++..+ ..+++|+
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~------------------------~~l~~L~ 402 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANF------------------------MGLEELQ 402 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCC------------------------TTCTTCC
T ss_pred CCCCCEEECCCCC-CCCCCCHHHHHCCCCCCCEEECCCCC-CCCCHHHC------------------------CCCCCCC
T ss_conf 8988879775873-68775201221467755486788995-30005540------------------------6888889
Q ss_pred HHHHCCCCHHCCCC-CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 66603212110024-68786647785299999198464443558964389635999907321672478743334443223
Q 000701 1059 EVALSRKDIMLILQ-GNFPQHLFGRLQQLEVWHDDLAAGFPVGLLEVLCSLENLVLSCNSYEEIFSNEGCLEKHVDVRKF 1137 (1344)
Q Consensus 1059 ~L~l~~~~l~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~~~~~ 1137 (1344)
.|++++|.+....+ ..+. .+++|+.|+++.++++...+..+ ..+++|+.|+++.+.+.+..
T Consensus 403 ~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~--------------- 464 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNT--------------- 464 (606)
T ss_dssp EEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGE---------------
T ss_pred EEECCCCCCCCCCCHHHHH--CCCCCCEEECCCCCCCCCCHHHH-CCCCCCCEEECCCCCCCCCC---------------
T ss_conf 6589887058753764564--62137889896897874335553-47787898989898379854---------------
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 33233562450227787851089753001120167422433311235677643235655898806888521122346743
Q 000701 1138 ARIKSLRLVCLNHLIKYLLKQDSQLNSIFQYLEFLSLQHCRNLLSLLPLSSSISFGNLTHLVVHDCEKLVSLVTCSVAKS 1217 (1344)
Q Consensus 1138 ~~L~~L~l~~l~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~ 1217 (1344)
.+..+..+++|+.|++++| .++.+++ ..+..+++|+.|++++| +++.+. +..+..
T Consensus 465 ---------------------~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~ 519 (606)
T 3vq2_A 465 ---------------------LSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN-NLLFLD-SSHYNQ 519 (606)
T ss_dssp ---------------------ECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCEE-GGGTTT
T ss_pred ---------------------HHHHHCCCCCCCEEECCCC-CCCCCCH-HHHCCCCCCCEEECCCC-CCCCCC-HHHCCC
T ss_conf ---------------------6776045788998989888-5776486-56154646898989899-578748-777068
Q ss_pred HCCCCEEEECCCCCCEEEEECCCCCCCHHHHHCCCCEEEEC-CCCEEEECCCCC
Q ss_conf 10122687715656327740468899502220376627817-416465166877
Q 000701 1218 LERLVMLSISGCSAMRQVIIGCGQGDSDIAAANLKEEIVFS-KLRYIGLLDLEN 1270 (1344)
Q Consensus 1218 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~ 1270 (1344)
+++|+.|++++|. ++.+|..... ++ +|+.|++.++|-
T Consensus 520 l~~L~~L~l~~N~-l~~~p~~~~~---------------l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 520 LYSLSTLDCSFNR-IETSKGILQH---------------FPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTCCEEECTTSC-CCCEESCGGG---------------SCTTCCEEECCSCCC
T ss_pred CCCCCEEECCCCC-CCCCCHHHHH---------------HCCCCCEEECCCCCC
T ss_conf 8768988898983-7666876752---------------102174887628986
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=285.07 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=99.5
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 997349999889988999951665146898632125677881398652997079888867-7111157798688758877
Q 000701 509 ISIIDSSIPELPEGLEYPKLEFLFMCSKDPFVEINISKSFFKEMRMLRVVGFSKMQLSSL-PSSMDLLVNLQTLSLDQSM 587 (1344)
Q Consensus 509 l~~~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 587 (1344)
+.........+|... .+.++.|.+.++. +..++...|.+++.|++|++++|.+..+ |..|.++.+|++|++++|.
T Consensus 17 ~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLNEIPGTL-PNSTECLEFSFNV---LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTCC---CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCCCCCCCCC-CCCCCEEECCCCC---CCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 777779806286778-9867589815873---471796672567665289788983552485113684336764488985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECC
Q ss_conf 7772--1013543455354636878556-744205574548804455432323904430377687898202442310124
Q 000701 588 LGDI--AIIGKLKNLEILSMINSDIVKL-PEAFGLLTKLRLLDLTDCFQLKVIAPNVLSSLIRLEELYMRNCFVQWEVRG 664 (1344)
Q Consensus 588 i~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 664 (1344)
+..+ ..++++.+|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 65458655234421537652126766578101223782238988798-341147654568765687776568445-----
Q ss_pred CCCCCCCCCHHHHCCCCCCC--EEEEEECCCC
Q ss_conf 44534445513314999996--9998907898
Q 000701 665 VNTERSCAGLDELMHLPRLT--SLEIDIGNDD 694 (1344)
Q Consensus 665 ~~~~~~~~~l~~L~~l~~L~--~L~i~~~~~~ 694 (1344)
......++.+++|+ .|++..+...
T Consensus 167 ------~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 167 ------YLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp ------EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ------CCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf ------54965633221564038966798147
Done!