BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000702
(1343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 223 bits (568), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 145/215 (67%), Gaps = 3/215 (1%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGE 510
+I + NA F W S PTL+GI+ + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 511 VRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTII 570
V + G+ AYV Q AWIQ+ ++ ENILFG +++ Y+ VI AC+L DLE+ GD+T I
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI--MTALANKT 628
G++G+NLSGGQKQRV LARA+Y +ADIYL DDP SAVDAH G +F+ I L NKT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 629 VIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
I VTH + +LP D I+V+ G+I + G Y +LL
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 23/231 (9%)
Query: 1111 PLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDL 1170
P L+GIT + P G + +VG+ G GKS+L+ AL ++ G +
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-------------I 64
Query: 1171 RSRLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPV 1227
+ + +PQ + ++R N+ LEE R + +A +I+ D+ T +
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR---TEI 121
Query: 1228 LENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT-DNLIQKII--RTEFKDCT 1284
E G N S GQ+Q VSL RA+ A I + D+ ++VD ++ + +I + K+ T
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 1285 VCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYSS 1335
+ H + + D+++V+S G+++E + LL + F + + Y+S
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYAS 231
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 235/953 (24%), Positives = 422/953 (44%), Gaps = 136/953 (14%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
I +EN F + P L G++++V+ G VA+ G G GKS+++S +L + G++
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL--- 555
+ G A VSQ + + IEENI G + ++++ AC +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK--EGITREEMVAACKMANA 533
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
+K ++ +G T++GDRG LSGGQKQR+ +ARAL ++ I LLD+ SA+DA + +
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGI 592
Query: 616 FKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRII----------QAGKYDDLLQA 665
++ + A +T I + H++ + AD I+ K G+++ Q G Y DL+ A
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 666 GTDFNALVSA----------------HHEAI-----EAMDIPNHSSEDSDENLTLDGCVI 704
T +A+ SA HE + E DI N + ++T +G VI
Sbjct: 653 QTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSIT-NGPVI 711
Query: 705 PCKKCDASGDNIDNLAKEVQDGXXXXXXXXXXXXXXXXXXXXXXLVQEEERVRGRVSMKV 764
K+ D + L +E+++ L + R ++ +
Sbjct: 712 DEKEERIGKDALSRLKQELEEN----------------NAQKTNLFEILYHARPH-ALSL 754
Query: 765 YLSYMAAAYRGLLIPLIILAQVLF-QFLQIASNWWMAWANPQTEGDQPKVNPMVLLVVYM 823
++ A G + P V F F+ + + NP Q ++ LV +
Sbjct: 755 FIGMSTATIGGFIYPTY---SVFFTSFMNVFA------GNPADFLSQGHFWALMFLV--L 803
Query: 824 ALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDS--TPAGRILNRVSI 881
A A G F+ + +A+ L + L K+ R+V + FFDS +G+I R++
Sbjct: 804 AAAQGICSFLMTFFMGIASESL--TRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLAT 861
Query: 882 DQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSR 941
D + I FR +T + +V IG+ WQ+ LL+I + + Q Y+ R
Sbjct: 862 DVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQ--YLRGRR 919
Query: 942 ELVRIVS----IQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFF--CS 995
+ V S I + E+I T++ +E F + LD +
Sbjct: 920 FTGKNVKSASEFADSGKIAI--EAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAF 977
Query: 996 LAAIEWLCLR--MELLSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWIL 1053
+ + + C + LL+T + + L+++ P + P M L V Y + ++ +
Sbjct: 978 IQGLSYGCASSVLYLLNTCAYRMGLALIITDPP-TMQP-MRVLRVMYAITISTSTLGFAT 1035
Query: 1054 SF------CKLENKII-----SIERIYQYSQIPGEAPP-----VIEDSRPPSSWPENGTI 1097
S+ II I +I S + GE + ++ R ++PE I
Sbjct: 1036 SYFPEYAKATFAGGIIFGMLRKISKIDSLS-LAGEKKKLYGKVIFKNVR--FAYPERPEI 1092
Query: 1098 ELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXX 1157
E +L G++ + G+ + +VG +G GKST++ L R + G
Sbjct: 1093 E--------------ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138
Query: 1158 XXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCN----LDPLEEHSDREIWEALDKSQLG 1213
RS++ I+ Q+P LF+ +I N LDP + ++ EA + +
Sbjct: 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIH 1197
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
+ + + ET V + G S GQ+Q +++ RAL++ +IL+LDEAT+++DT ++ ++Q
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
+ + + T IAHR+ TV+++D + V+S+G + E T +L+ +K + +
Sbjct: 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 7/257 (2%)
Query: 1080 PVIEDS----RPPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGS 1135
PVI+ S R + T+E + ++P +L G+ G+ + +VG +G
Sbjct: 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGC 455
Query: 1136 GKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPL 1195
GKST+I L R + G+ L LR + ++ Q+P LF TI N+
Sbjct: 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515
Query: 1196 EEHSDRE-IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254
+E RE + A + ++ T V + G S GQ+Q +++ RAL++ +I
Sbjct: 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575
Query: 1255 LVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1314
L+LDEAT+++D ++ ++Q+ + K T IAHR+ T+ ++DL++ +G+V E
Sbjct: 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635
Query: 1315 PGRLLEDKSSMFLKLVT 1331
R L + ++ LVT
Sbjct: 636 H-RALMAQQGLYYDLVT 651
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 143/237 (60%), Gaps = 1/237 (0%)
Query: 435 LQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKS 494
LQ+ L +T + +EN W + P L I+ K++RG +AV G G+GK+
Sbjct: 2 LQKQEYKTLEYNLTTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKT 60
Query: 495 SLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS 554
SLL I+GE+ G+++ G ++ SQ +WI G I+ENI+FG D+ +Y+ VI AC
Sbjct: 61 SLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 120
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
L++D+ F+ D ++G+ GI LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T E
Sbjct: 121 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 180
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+F+ + +ANKT I VT ++E L AD IL+L EG G + +L DF++
Sbjct: 181 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 237
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 81
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
R+ Q + GTI+ N+ + + + QL + + +K + E G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
S GQR +SL RA+ K A + +LD +D T+ I F+ C +A++
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMANKT 194
Query: 1293 PTVIDS--------DLVLVLSDG 1307
++ S D +L+L +G
Sbjct: 195 RILVTSKMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+T + +EN W + P L I+ K++RG +AV G G+GK+SLL I+GE+
Sbjct: 2 LTTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 507 ISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGD 566
G+++ G ++ SQ +WI G I+ENI+FG D+ +Y+ VI AC L++D+ F+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
++G+ GI LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T E+F+ + +AN
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 627 KTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
KT I VT ++E L AD IL+L EG G + +L DF++
Sbjct: 181 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
R+ Q + GTI+ N+ + + + QL + + +K + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
S GQR +SL RA+ K A + +LD +D T+ I F+ C +A++
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMANKT 182
Query: 1293 PTVIDS--------DLVLVLSDG 1307
++ S D +L+L +G
Sbjct: 183 RILVTSKMEHLKKADKILILHEG 205
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 133/216 (61%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F P L I++ +++G +A+ G GSGK+SLL ILGE+ G ++ G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
++ SQ +WI G I+ENI+FG D+ +YK V+ AC L++D+ F+ D T++G+ G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T ++F+ + +ANKT I VT +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+E L AD IL+L +G G + +L DF++
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + I G TGSGK++L+ + +E + G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-------------EGIIKHSG 99
Query: 1173 RLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
R+ Q + GTI+ N+ +E+ + + +A Q DI + +Q T + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ--DITKFAEQD-NTVLGE 156
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
G S GQR +SL RA+ K A + +LD +D T+ + F+ C +A
Sbjct: 157 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMA 209
Query: 1290 HRIPTVIDS--------DLVLVLSDG 1307
++ ++ S D +L+L G
Sbjct: 210 NKTRILVTSKMEHLRKADKILILHQG 235
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 138/225 (61%), Gaps = 2/225 (0%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+T + +EN W + P L I+ K++RG +AV G G+GK+SLL I+GE+
Sbjct: 2 LTTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 507 ISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGD 566
G+++ G ++ SQ +WI G I+ENI+ G D+ +Y+ VI AC L++D+ F+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 119
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
++G+ GI LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T E+F+ + +AN
Sbjct: 120 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 179
Query: 627 KTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
KT I VT ++E L AD IL+L EG G + +L DF++
Sbjct: 180 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 224
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R+ Q + GTI+ N+ + +E+ R + +A QL + + +K + E
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAEKDNIVLGEG 126
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQR +SL RA+ K A + +LD +D T+ I F+ C +A+
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMAN 179
Query: 1291 RIPTVIDS--------DLVLVLSDG 1307
+ ++ S D +L+L +G
Sbjct: 180 KTRILVTSKMEHLKKADKILILHEG 204
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 133/216 (61%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F P L I++ +++G +A+ G GSGK+SLL ILGE+ G ++ G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
++ SQ +WI G I+ENI+FG D+ +YK V+ AC L++D+ F+ D T++G+ G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T ++F+ + +ANKT I VT +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+E L AD IL+L +G G + +L DF++
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + I G TGSGK++L+ + +E + G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-------------EGIIKHSG 99
Query: 1173 RLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
R+ Q + GTI+ N+ +E+ + + +A Q DI + +Q T + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ--DITKFAEQD-NTVLGE 156
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
G S GQR +SL RA+ K A + +LD +D T+ + F+ C +A
Sbjct: 157 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMA 209
Query: 1290 HRIPTVIDS--------DLVLVLSDG 1307
++ ++ S D +L+L G
Sbjct: 210 NKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 130/204 (63%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527
P L I+ K++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 528 SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G I+ENI+ G D+ +Y+ VI AC L++D+ F+ D ++G+ GI LSGGQ+ R+ L
Sbjct: 112 PGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 171
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV 647
ARA+Y+DAD+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 648 LKEGRIIQAGKYDDLLQAGTDFNA 671
L EG G + +L DF++
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDFSS 255
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
R+ Q + GTI+ N+ + + + QL + + +K + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRI 1292
S GQR +SL RA+ K A + +LD +D T+ I F+ C +A++
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMANKT 212
Query: 1293 PTVIDS--------DLVLVLSDG 1307
++ S D +L+L +G
Sbjct: 213 RILVTSKMEHLKKADKILILHEG 235
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 176 bits (447), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 130/204 (63%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527
P L I+ K++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 528 SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G I+ENI+FG D+ +Y+ VI AC L++D+ F+ D ++G+ GI LS GQ+ ++ L
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV 647
ARA+Y+DAD+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 648 LKEGRIIQAGKYDDLLQAGTDFNA 671
L EG G + +L DF++
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDFSS 255
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1173 RLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
R+ Q + GTI+ N+ +E+ R + +A QL + + +K + E
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC---QLEEDISKFAEKDNIVLGE 156
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
G S GQ+ +SL RA+ K A + +LD +D T+ I F+ C +A
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMA 209
Query: 1290 HRIPTVIDS--------DLVLVLSDG 1307
++ ++ S D +L+L +G
Sbjct: 210 NKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527
P L I+ K++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ++WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 528 SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G I+ENI+ G D+ +Y+ VI AC L++D+ F+ D ++G+ GI LSGGQ+ R+ L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV 647
ARA+Y+DAD+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 648 LKEGRIIQAGKYDDLLQAGTDFNA 671
L EG G + +L DF++
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDFSS 254
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 33/205 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R+ Q+ + GTI+ N+ + +E+ R + +A QL + + +K + E
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKAC---QLEEDISKFAEKDNIVLGEG 156
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQR +SL RA+ K A + +LD +D T+ I F+ C +A+
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMAN 209
Query: 1291 RIPTVIDS--------DLVLVLSDG 1307
+ ++ S D +L+L +G
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527
P L I+ K++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ++WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 528 SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G I+ENI+ G D+ +Y+ VI AC L++D+ F+ D ++G+ GI LSGGQ+ R+ L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV 647
ARA+Y+DAD+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 648 LKEGRIIQAGKYDDLLQAGTDFNA 671
L EG G + +L DF++
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDFSS 254
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 33/205 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R+ Q+ + GTI+ N+ + +E+ R + +A QL + + +K + E
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKAC---QLEEDISKFAEKDNIVLGEG 156
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQR +SL RA+ K A + +LD +D T+ I F+ C +A+
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMAN 209
Query: 1291 RIPTVIDS--------DLVLVLSDG 1307
+ ++ S D +L+L +G
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEG 234
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 132/216 (61%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F P L I++ +++G +A+ G GSGK+SLL ILGE+ G ++ G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
++ SQ +WI G I+ENI+ G D+ +YK V+ AC L++D+ F+ D T++G+ G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T ++F+ + +ANKT I VT +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+E L AD IL+L +G G + +L DF++
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + I G TGSGK++L+ + +E + G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-------------EGIIKHSG 99
Query: 1173 RLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
R+ Q + GTI+ N+ +E+ + + +A Q DI + +Q T + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ--DITKFAEQD-NTVLGE 156
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
G S GQR +SL RA+ K A + +LD +D T+ + F+ C +A
Sbjct: 157 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMA 209
Query: 1290 HRIPTVIDS--------DLVLVLSDG 1307
++ ++ S D +L+L G
Sbjct: 210 NKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 132/216 (61%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F P L I++ +++G +A+ G GSGK+SLL ILGE+ G ++ G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
++ SQ +WI G I+ENI+ G D+ +YK V+ AC L++D+ F+ D T++G+ G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T ++F+ + +ANKT I VT +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+E L AD IL+L +G G + +L DF++
Sbjct: 220 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + I G TGSGK++L+ + +E + G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-------------EGIIKHSG 99
Query: 1173 RLGIIPQDPNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLE 1229
R+ Q + GTI+ N+ +E+ + + +A Q DI + +Q T + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ--DITKFAEQD-NTVLGE 156
Query: 1230 NGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIA 1289
G S GQR +SL RA+ K A + +LD +D T+ + F+ C +A
Sbjct: 157 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMA 209
Query: 1290 HRIPTVIDS--------DLVLVLSDG 1307
++ ++ S D +L+L G
Sbjct: 210 NKTRILVTSKMEHLRKADKILILHQG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 132/216 (61%), Gaps = 1/216 (0%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
N F P L I++ +++G +A+ G GSGK+SLL ILGE+ G ++ G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 516 TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGI 575
++ SQ +WI G I+ENI+ G D+ +YK V+ AC L++D+ F+ D T++G+ G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 158
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQ 635
LSGGQ+ R+ LARA+Y+DAD+YLLD PF +D T ++F+ + +ANKT I VT +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 218
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
+E L AD IL+L +G G + +L DF++
Sbjct: 219 MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 254
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + I G TGSGK++L+ + +E + G+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-------------EGIIKHSG 99
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R+ Q + GTI+ N+ + +E+ + + +A Q DI + +Q T + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQ--DITKFAEQD-NTVLGEG 156
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQR +SL RA+ K A + +LD +D T+ + F+ C +A+
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMAN 209
Query: 1291 RIPTVIDS--------DLVLVLSDG 1307
+ ++ S D +L+L G
Sbjct: 210 KTRILVTSKMEHLRKADKILILHQG 234
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 129/204 (63%), Gaps = 1/204 (0%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ 527
P L I+ K++RG +AV G G+GK+SLL I+GE+ G+++ G ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 528 SGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQL 587
G I+ENI+ G D+ +Y+ VI AC L++D+ F+ D ++G+ GI LS GQ+ ++ L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 588 ARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILV 647
ARA+Y+DAD+YLLD PF +D T E+F+ + +ANKT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 648 LKEGRIIQAGKYDDLLQAGTDFNA 671
L EG G + +L DF++
Sbjct: 231 LHEGSSYFYGTFSELQNLQPDFSS 254
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
VL I G+ + + G TG+GK++L+ + +EP+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1173 RLGIIPQDPNLFEGTIRCNLDPL--EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLEN 1230
R+ Q + GTI+ N+ + +E+ R + +A QL + + +K + E
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKAC---QLEEDISKFAEKDNIVLGEG 156
Query: 1231 GDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAH 1290
G S GQ+ +SL RA+ K A + +LD +D T+ I F+ C +A+
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI-------FESCVCKLMAN 209
Query: 1291 RIPTVIDS--------DLVLVLSDG 1307
+ ++ S D +L+L +G
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEG 234
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 156 bits (394), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 228/497 (45%), Gaps = 31/497 (6%)
Query: 841 ATFGLAAAQKLFVKMLRSVFRAPMSF--------FDSTPAGRILNRVSIDQSVVDLDIPF 892
F A+Q + R +FR +SF S+ R+ N V+ Q++V + +
Sbjct: 84 TVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRI 143
Query: 893 RLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKS 952
+ +V + + ++ ++ L+ P+ + +W+ K L R +
Sbjct: 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK----KGNPLFRKIQESTD 199
Query: 953 PIIHLFGESIAGASTIRGFGQEK----RFMKRNLYLLDCFARPFFCSLAAIEWLCLRMEL 1008
+ + E++ G +R F +E+ F K N + R + + I +
Sbjct: 200 EVNRVVRENLLGVRVVRAFRREEYENENFRKAN----ESLRRSIISAFSLIVFA------ 249
Query: 1009 LSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERI 1068
L F+F M ++ G + + + + L + + S + N + I R
Sbjct: 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA 309
Query: 1069 YQYSQIPGEA---PPVIEDSRPPSSWPE-NGTIELIDLKVRYGENLPLVLHGITCAFPGG 1124
++ E P IE++ + P G++ +++ RY EN VL G+ + G
Sbjct: 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPG 369
Query: 1125 KKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLF 1184
+ ++G TGSGKSTL+ + RLI+P GR L DLR + +PQ+ LF
Sbjct: 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 1185 EGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVS 1243
GTI+ NL E+ +D EI EA +Q+ D + + ++ V G N+S GQ+Q +S
Sbjct: 430 SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489
Query: 1244 LGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLV 1303
+ RAL+K+ ++L+LD+ T+SVD T+ I ++ K CT I +IPT + +D +LV
Sbjct: 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV 549
Query: 1304 LSDGRVAEFDTPGRLLE 1320
L +G+VA F T LLE
Sbjct: 550 LHEGKVAGFGTHKELLE 566
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 173/389 (44%), Gaps = 44/389 (11%)
Query: 305 KLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIQLEEMRGVEFRW----LRKALYSQ-- 358
K+ + DE R E L +R+++ + EE FR LR+++ S
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVR--------AFRREEYENENFRKANESLRRSIISAFS 244
Query: 359 ----AFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVS 414
A FIF + +A + FG ++ Q+ GS+++ + L ++++
Sbjct: 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILN 304
Query: 415 MMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGIS 474
+ + S R+ L E+ E+A L ++ EN EF ++ ++ P LSG++
Sbjct: 305 FIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTD-PVLSGVN 363
Query: 475 MKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVR-------------LCGTAAYVS 521
V G VAV G GSGKS+L++ I I G V L G + V
Sbjct: 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP 423
Query: 522 QSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLEL---FSHGDQTIIGDRGINLS 578
Q + SG I+EN+ +G + A +++ A + + + G + + G N S
Sbjct: 424 QETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL---FKEYIMTALANKTVIFVTHQ 635
GGQKQR+ +ARAL + + +LDD S+VD T + K Y T +T +
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC----TTFIITQK 537
Query: 636 VEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ AD ILVL EG++ G + +LL+
Sbjct: 538 IPTALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/516 (26%), Positives = 240/516 (46%), Gaps = 53/516 (10%)
Query: 845 LAAAQKLFVKMLRSVF----RAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFAST 900
L +Q + ++ + +F R P+ FFD TP G I++RV D ++ + + F S
Sbjct: 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSG 161
Query: 901 TIQLVGIIGVM---TMVTWQVLLLVIPMAVACLWM-----QKYYMASSRELVRIVSIQKS 952
+ L G + +M ++ V L ++P+ V + +KY+ + R L ++ I +
Sbjct: 162 IVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE- 220
Query: 953 PIIHLFGESIAGASTIRGFGQEKRFMKR------NLYLLDCFARPFFCSLAAIEWLCLRM 1006
E I+G + I+ F +E++ M++ +L + A+ F L + M
Sbjct: 221 -------EDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPL------M 267
Query: 1007 ELLSTFVFAFCMVLLVSFPHGAI---DPSMAGLAVT---YGLNLNARLSRWILSFCKLEN 1060
+++ FA L+S G + D G T Y L+ F ++
Sbjct: 268 NMVNNLGFA-----LISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322
Query: 1061 KIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVLHGITCA 1120
+ S ERI++ + E +D G IE ++ Y + P VL IT
Sbjct: 323 ALASAERIFEILDLEEEK----DDPDAVELREVRGEIEFKNVWFSYDKKKP-VLKDITFH 377
Query: 1121 FPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQD 1180
G+K+ +VG TGSGK+T++ L R + G+ LRS +GI+ QD
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 1181 PNLFEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVG 1237
LF T++ NL +P +D EI EA + ++ + ET + +NG++ S G
Sbjct: 438 TILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVID 1297
QRQL+++ RA L +IL+LDEAT++VDT T+ IQ + + T IAHR+ T+ +
Sbjct: 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555
Query: 1298 SDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEY 1333
+DL++VL DG + E L++ + + ++Y
Sbjct: 556 ADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 22/317 (6%)
Query: 377 FGTSILLGAQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQ 436
FG + L +T G++ + + R PL + +M+ S +RI L EE +
Sbjct: 281 FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340
Query: 437 EDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSL 496
+D V R + I+ +N F + +P L I+ + G +VA+ G GSGK+++
Sbjct: 341 DDPDAVELREVRG-EIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTI 397
Query: 497 LSCIL-------GEIPKISGEVR------LCGTAAYVSQSAWIQSGNIEENILFGSPMDK 543
++ ++ G+I ++R L + V Q + S ++EN+ +G+P
Sbjct: 398 VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--G 455
Query: 544 AKYKKVIHACSLKKDLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLL 600
A +++ A L H G +T++ D G +LS GQ+Q + + RA + I +L
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 601 DDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYD 660
D+ S VD T + + + + KT I + H++ + AD I+VL++G I++ GK+D
Sbjct: 516 DEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574
Query: 661 DLLQAGTDFNALVSAHH 677
+L+Q + L ++ +
Sbjct: 575 ELIQKRGFYYELFTSQY 591
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 1/224 (0%)
Query: 1091 WPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEP 1150
WP G + + DL +Y E +L I+ + G+++G++GRTGSGKSTL+ A RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 1151 ACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEALDKS 1210
G L R G+IPQ +F GT R NLDP HSD+EIW+ D+
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDN 1270
L ++ KL+ +++ G S G +QL+ L R++L +A+IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1271 LIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1314
+I++ ++ F DCTV RI +++ D LV+ + +V ++D+
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDS 236
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA---- 517
Y L IS + G RV + G GSGKS+LLS L + GE+++ G +
Sbjct: 29 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSI 87
Query: 518 ---------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQT 568
+ Q +I SG +N+ + + KV L+ +E F
Sbjct: 88 TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDF 147
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKT 628
++ D G LS G KQ + LAR++ A I LLD+P + +D T ++ + + A A+ T
Sbjct: 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCT 206
Query: 629 VIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
VI ++E + D LV++E ++ Q YD +L+
Sbjct: 207 VILCEARIEAMLECDQFLVIEENKVRQ---YDSILE 239
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 137/535 (25%), Positives = 235/535 (43%), Gaps = 66/535 (12%)
Query: 835 VRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVV------DL 888
+R L+ T G +L + S+ R ++FFD T G ++NR+S D +++ +L
Sbjct: 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 140
Query: 889 DIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVS 948
R G AS I ++ + + T+ VL +V P+++ + +Y R+L ++
Sbjct: 141 SDGLRAGAQASVGISMMFFVSP-NLATF-VLSVVPPVSIIAVIYGRYL----RKLTKVTQ 194
Query: 949 IQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLD---------CFARPFFCSLAAI 999
+ L E I T+R FG+E +++ +D FAR F +
Sbjct: 195 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 254
Query: 1000 EWLCLRMELL---STFVFAFCMVL--LVSFPHGA--IDPSMAGLAVTY-----GLNLNAR 1047
+ + +L + + M + L SF A + S+ GL+ Y GL R
Sbjct: 255 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGR 314
Query: 1048 LSRWILSFCKL--ENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVR 1105
L + KL +I E+ +Q G +E ++
Sbjct: 315 LWELLEREPKLPFNEGVILNEKSFQ------------------------GALEFKNVHFA 350
Query: 1106 YGENLPL-VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXX 1164
Y + + + + P G +VG +GSGKST++ L RL +PA G
Sbjct: 351 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 1165 XGLHDLRSRLGIIPQDPNLFEGTIRCNL-----DPLEEHSDREIWEALDKSQLGDIVRGK 1219
LRS++G + Q+P LF +I N+ DP + EI + + +R
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNF 469
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
Q T V E G S GQ+Q +++ RALLK +IL+LDEAT+++D + L+Q+ +
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334
TV IAHR+ T+ ++++V VL G++ E+ LL + ++ KL+ + S
Sbjct: 530 MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 191/403 (47%), Gaps = 33/403 (8%)
Query: 285 TIISIVVTVPVAKVQEEYQDKLMAAK---DERMRKTSECLRNMRILKLQAWE-DRYRIQL 340
+II+++ + K+ + QD L A +ER+ +R +R + E ++Y ++
Sbjct: 176 SIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN----VRTVRAFGKEMTEIEKYASKV 231
Query: 341 EEMRGVEFRWLRKALYSQA-FITFIFWSSPIFVAAVTFGTSILLG-AQLTAGSVLSAMAT 398
+ + + RK +++A F S + V +V + +L+G A +T G + S +
Sbjct: 232 DHV----MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMY 287
Query: 399 FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE-ELQEDATIVLPRGMTNVAIQIENA 457
+ + S + + + R+ L+ E +L + ++L A++ +N
Sbjct: 288 AFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNV 347
Query: 458 EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-- 515
F + P S+ + G A+ G GSGKS++LS +L SG + L G
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 516 -----------TAAYVSQSAWIQSGNIEENILFG----SPMDKAKYKKVIHACSLKKDLE 560
VSQ + S +I ENI +G S + + ++V + +
Sbjct: 408 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
F G T++G++G+ LSGGQKQR+ +ARAL ++ I LLD+ SA+DA L +E +
Sbjct: 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 526
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ +TV+ + H++ + A+ + VL +G+I + GK+++LL
Sbjct: 527 DRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 134/537 (24%), Positives = 230/537 (42%), Gaps = 70/537 (13%)
Query: 835 VRAVLVATFGLAAAQKLFVKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVV------DL 888
+R L+ T G +L + S+ R ++FFD T G ++NR+S D +++ +L
Sbjct: 112 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 171
Query: 889 DIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVS 948
R G AS I ++ + + T+ VL +V P+++ + +Y R+L ++
Sbjct: 172 SDGLRAGAQASVGISMMFFVSP-NLATF-VLSVVPPVSIIAVIYGRYL----RKLTKVTQ 225
Query: 949 IQKSPIIHLFGESIAGASTIRGFGQEKRFMKR---------NLYLLDCFARPFFCSLAAI 999
+ L E I T+R FG+E +++ L + FAR F +
Sbjct: 226 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 285
Query: 1000 EWLCLRMELL----------STFVFAFCMVLLVSFPHGAIDPSMAGLAVTY-----GLNL 1044
+ + +L V L+ +F G S+ GL+ Y GL
Sbjct: 286 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGI---SIGGLSSFYSELMKGLGA 342
Query: 1045 NARLSRWILSFCKL--ENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDL 1102
RL + KL +I E+ +Q G +E ++
Sbjct: 343 GGRLWELLEREPKLPFNEGVILNEKSFQ------------------------GALEFKNV 378
Query: 1103 KVRYGENLPL-VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXX 1161
Y + + + + P G +VG +GSGKST++ L RL +PA G
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 1162 XXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL----DPLEEHSDREIWEALDKSQLGDIVR 1217
LRS++G + Q+P LF +I N+ D + EI + + +R
Sbjct: 439 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 498
Query: 1218 GKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIR 1277
Q T V E G S GQ+Q +++ RALLK +IL+LDEAT+++D + L+Q+ +
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 558
Query: 1278 TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLVTEYS 1334
TV IAH + T+ ++++V VL G++ E+ LL + ++ KL+ + S
Sbjct: 559 RLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 190/403 (47%), Gaps = 33/403 (8%)
Query: 285 TIISIVVTVPVAKVQEEYQDKLMAAK---DERMRKTSECLRNMRILKLQAWE-DRYRIQL 340
+II+++ + K+ + QD L A +ER+ +R +R + E ++Y ++
Sbjct: 207 SIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN----VRTVRAFGKEMTEIEKYASKV 262
Query: 341 EEMRGVEFRWLRKALYSQA-FITFIFWSSPIFVAAVTFGTSILLG-AQLTAGSVLSAMAT 398
+ + + RK +++A F S + V +V + +L+G A +T G + S +
Sbjct: 263 DHV----MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMY 318
Query: 399 FRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE-ELQEDATIVLPRGMTNVAIQIENA 457
+ + S + + + R+ L+ E +L + ++L A++ +N
Sbjct: 319 AFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNV 378
Query: 458 EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-- 515
F + P S+ + G A+ G GSGKS++LS +L SG + L G
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 516 -----------TAAYVSQSAWIQSGNIEENILFG----SPMDKAKYKKVIHACSLKKDLE 560
VSQ + S +I ENI +G S + + ++V + +
Sbjct: 439 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 498
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
F G T++G++G+ LSGGQKQR+ +ARAL ++ I LLD+ SA+DA L +E +
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 557
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ +TV+ + H + + A+ + VL +G+I + GK+++LL
Sbjct: 558 DRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 229/502 (45%), Gaps = 56/502 (11%)
Query: 850 KLFVKMLRSVFR----APMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLV 905
K+ + M R +F P+SFFD G +L+R++ D V L ++
Sbjct: 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASII 154
Query: 906 GIIGVMTMVTWQVLLLVIPMA----VACLWMQKYYMASSRELVRIVSIQKSPIIHLFGES 961
G+ +M +WQ+ +++I +A +A + K + S+ + + + +
Sbjct: 155 GLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMG----QVTTSAEQM 210
Query: 962 IAGASTIRGFG----QEKRFMK-RNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAF 1016
+ G + FG + KRF K N L S ++I + +L+++ AF
Sbjct: 211 LKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMK---MVSASSISDPII--QLIASLALAF 265
Query: 1017 CMVLLVSFPHGAIDPSMAG-LAVTYG------------LNLNARLSRWILSFCKLENKII 1063
+ SFP +D AG + V + N+NA+ R ++ C+ I+
Sbjct: 266 VL-YAASFP-SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG-MAACQTLFTIL 322
Query: 1064 SIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY-GENLPLVLHGITCAFP 1122
E Q E VIE + G +E ++ Y G ++P L I P
Sbjct: 323 DSE------QEKDEGKRVIERA--------TGDVEFRNVTFTYPGRDVP-ALRNINLKIP 367
Query: 1123 GGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPN 1182
GK + +VGR+GSGKST+ + R + G L LR+++ ++ Q+ +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 1183 LFEGTIRCNLD--PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQ 1240
LF T+ N+ E++S +I EA + D + D L+T + ENG S GQRQ
Sbjct: 428 LFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487
Query: 1241 LVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDL 1300
+++ RALL+ + IL+LDEAT+++DT ++ IQ + K+ T IAHR+ T+ +D
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547
Query: 1301 VLVLSDGRVAEFDTPGRLLEDK 1322
++V+ DG + E T LLE +
Sbjct: 548 IVVVEDGVIVERGTHNDLLEHR 569
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 152/295 (51%), Gaps = 23/295 (7%)
Query: 387 LTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRG 446
LTAG++ ++ L PL++ ++ + + + + L E+ +++ V+ R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERA 338
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL----- 501
+V + N F YP P L I++K+ G VA+ G GSGKS++ S I
Sbjct: 339 TGDV--EFRNVTFT-YPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 502 --GEIPKISGEVR------LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC 553
GEI ++R L A VSQ+ + + + NI + ++ +++ A
Sbjct: 396 DEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EQYSREQIEEAA 454
Query: 554 SLKKDLELFSHGDQ---TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
+ ++ + D T+IG+ G+ LSGGQ+QR+ +ARAL +D+ I +LD+ SA+D
Sbjct: 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD-- 512
Query: 611 TGSELFKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
T SE + + L N+T + + H++ + AD I+V+++G I++ G ++DLL+
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 206/484 (42%), Gaps = 54/484 (11%)
Query: 854 KMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTM 913
++ P+ FFD G +L+R++ D V L ++G++ +M
Sbjct: 103 RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW 162
Query: 914 VTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFG- 972
+WQ+ L++I +A + + R++ R + + + + G + +G
Sbjct: 163 NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGG 222
Query: 973 ---QEKRFMK---------RNLYLLDCFARPFFCSLAAIEWLC---------LRMELL-S 1010
+ KRF K L A P +A++ +R EL
Sbjct: 223 QEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG 282
Query: 1011 TFVFAFCMVLLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQ 1070
TF F + G + P A +VT + + LE +
Sbjct: 283 TFTVVFSAMF------GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--------- 327
Query: 1071 YSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY-GENLPLVLHGITCAFPGGKKIGI 1129
D+ + NG +++ D+ Y G+ P + H ++ + P GK + +
Sbjct: 328 ------------RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVAL 374
Query: 1130 VGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIR 1189
VGR+GSGKST+ R + G L +LR ++ Q+ +LF TI
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
Query: 1190 CNLDPLEE--HSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRA 1247
N+ E ++ +I +A ++ + + Q L+T + ENG + S GQRQ V++ RA
Sbjct: 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
Query: 1248 LLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDG 1307
LL+ A +L+LDEAT+++DT ++ IQ + K+ TV IAHR+ T+ +D +LV+ +G
Sbjct: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
Query: 1308 RVAE 1311
+ E
Sbjct: 555 EIIE 558
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 21/295 (7%)
Query: 385 AQLTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLP 444
A+LT G+ + L PL+ + S + + + G + E +++
Sbjct: 277 AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAE 336
Query: 445 RGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI 504
R N + +++ F Y +P LS +S + +G VA+ G GSGKS++ +
Sbjct: 337 R--VNGEVDVKDVTFT-YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
Query: 505 PKISGEVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMD--KAKYKKV 549
SG + L G A VSQ+ + + I NI + + + + + ++
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQA 453
Query: 550 IHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDA 609
+ +E G T+IG+ G +LSGGQ+QRV +ARAL +DA + +LD+ SA+D
Sbjct: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD- 512
Query: 610 HTGSELFKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
T SE + + L NKTV+ + H++ + AD ILV+ EG II+ G++ DLL
Sbjct: 513 -TESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/494 (25%), Positives = 225/494 (45%), Gaps = 46/494 (9%)
Query: 850 KLFVKMLRSVFR----APMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLV 905
K+ + M R +F P++FFD G +L+R++ D V L ++
Sbjct: 95 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASII 154
Query: 906 GIIGVMTMVTWQVLLLVIPMA----VACLWMQKYYMASSRELVRIVSIQKSPIIHLFGES 961
G+ +M +WQ+ ++++ +A +A + K + + S+ + + + +
Sbjct: 155 GLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMG----QVTTSAEQM 210
Query: 962 IAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLL 1021
+ G + FG ++ KR + + ++A ++L+++ AF +
Sbjct: 211 LKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL-YA 269
Query: 1022 VSFPHGAIDPSMAG-LAVTYG------------LNLNARLSRWILSFCKLENKIISIERI 1068
SFP +D AG + V + N+NA+ R ++ C+ I+ E
Sbjct: 270 ASFP-SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG-MAACQTLFAILDSE-- 325
Query: 1069 YQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRY-GENLPLVLHGITCAFPGGKKI 1127
Q E VI+ + G +E ++ Y G +P L I P GK +
Sbjct: 326 ----QEKDEGKRVIDRA--------TGDLEFRNVTFTYPGREVP-ALRNINLKIPAGKTV 372
Query: 1128 GIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGT 1187
+VGR+GSGKST+ + R + G L LR+++ ++ Q+ +LF T
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 1188 IRCNLD--PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLG 1245
+ N+ EE+S +I EA + D + D L+T + ENG S GQRQ +++
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 1246 RALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLS 1305
RALL+ + IL+LDEAT+++DT ++ IQ + K+ T IAHR+ T+ +D ++V+
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
Query: 1306 DGRVAEFDTPGRLL 1319
DG + E T LL
Sbjct: 553 DGIIVERGTHSELL 566
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 23/294 (7%)
Query: 387 LTAGSVLSAMATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRG 446
LTAG++ ++ L PL++ ++ + + + + L E+ +++ V+ R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRA 338
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL----- 501
+ ++ N F YP P L I++K+ G VA+ G GSGKS++ S I
Sbjct: 339 TGD--LEFRNVTFT-YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 502 --GEIPKISGEVR------LCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC 553
G I ++R L A VSQ+ + + + NI + + ++ +++ A
Sbjct: 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAA 454
Query: 554 SLKKDLELFSHGDQ---TIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
+ ++ + D TIIG+ G+ LSGGQ+QR+ +ARAL +D+ I +LD+ SA+D
Sbjct: 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD-- 512
Query: 611 TGSELFKEYIMTAL-ANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
T SE + + L N+T + + H++ + AD I+V+++G I++ G + +LL
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 212/479 (44%), Gaps = 41/479 (8%)
Query: 866 FFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPM 925
F+ + G++++RV D V+ F L G + + + II ++++ L + +
Sbjct: 111 FYANNQVGQVISRVIND---VEQTKDFILTGLMNIWLDCITIIIALSIM----FFLDVKL 163
Query: 926 AVACLWMQKYYMASS-------RELVRIVSIQKSPIIHLFGESIAGASTIRGFGQE---- 974
+A L++ +Y+ + R+L R S + + E + G S ++ F E
Sbjct: 164 TLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA 223
Query: 975 KRFMKRNLYLLD---CFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGAIDP 1031
K F K+N L R S AAI + ++ V L +S G+I
Sbjct: 224 KNFDKKNTNFLTRALKHTRWNAYSFAAINTVT---DIGPIIVIGVGAYLAIS---GSITV 277
Query: 1032 SMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQ-----YSQIPGEAPPVIEDSR 1086
V Y L L R + SF L S++R++Q Y G IE
Sbjct: 278 GTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIE--- 334
Query: 1087 PPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146
+ G I++ + +Y +N +L I + G+ + VG +G GKSTLI + R
Sbjct: 335 -----IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 1147 LIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCN-LDPLEEHSDREIWE 1205
+ G+ LR+++G++ QD LF T++ N L +D E+ E
Sbjct: 390 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 449
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
A + D + Q +T V E G S GQ+Q +S+ R L IL+LDEAT+++D
Sbjct: 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 1266 TATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSS 1324
++++IQ+ + KD T +AHR+ T+ +D ++V+ +G + E T L+ + +
Sbjct: 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 25/342 (7%)
Query: 349 RWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVLSAMATFRILQEPLRN 408
RW YS A I + PI V V G + + +T G++ + + +L PLR
Sbjct: 242 RW---NAYSFAAINTVTDIGPIIVIGV--GAYLAISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 409 FPDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRP 468
+ + Q+ S+DR+ + E+ ++ P + I I++ F Y + P
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSF-QYNDNEAP 355
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------TAAYVS 521
L I++ +++G VA GM G GKS+L++ I SG++ + G T + +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 522 QSAWIQSGNI------EENILFGSPMDKAKYKKVIHACSLKKDLEL---FSHGDQTIIGD 572
Q +Q NI +ENIL G P A ++V+ A + + G T +G+
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473
Query: 573 RGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFV 632
RG+ LSGGQKQR+ +AR + I +LD+ SA+D + S + +E + ++T + V
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES-IIQEALDVLSKDRTTLIV 532
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
H++ + AD I+V++ G I++ G + +L+ + L S
Sbjct: 533 AHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 135/563 (23%), Positives = 244/563 (43%), Gaps = 52/563 (9%)
Query: 806 TEGDQPKV---NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862
T G P+ N + ++++ L S F++ G ++L + +S+ R
Sbjct: 736 TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 863 PMSFFD--STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLL 920
+S+FD G + R++ D + V RL L I + + WQ+ L
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 921 LVIPMA--VACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRF- 977
L++ + +A + + M S + L ++ S I E+I T+ +E++F
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFE 913
Query: 978 ----------MKRNLYLLDCFARPFFCSLAAIEW---LCLRME--LLSTFVFAFCMVLLV 1022
+ + F F + A + + C R L++ + F VLLV
Sbjct: 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLV 973
Query: 1023 SFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVI 1082
F A+ +G ++S + + K I RI E P I
Sbjct: 974 -FS-----------AIVFGAMAVGQVSSFAPDYAKATVSASHIIRII-------EKTPEI 1014
Query: 1083 EDSRPPSSWPE--NGTIELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGSGKS 1138
+ P G ++ + Y ++P VL G++ G+ + +VG +G GKS
Sbjct: 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 1139 TLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL---DPL 1195
T++Q L R +P G + LR++LGI+ Q+P LF+ +I N+ D
Sbjct: 1074 TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133
Query: 1196 EEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARIL 1255
S EI A ++ + + K T V + G S GQ+Q +++ RAL++Q IL
Sbjct: 1134 RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193
Query: 1256 VLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
+LDEAT+++DT ++ ++Q+ + + T IAHR+ T+ ++DL++V+ +G+V E T
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253
Query: 1316 GRLLEDKSSMFLKLVTEYSSRSS 1338
+LL K F + + ++ S
Sbjct: 1254 QQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 125/534 (23%), Positives = 233/534 (43%), Gaps = 68/534 (12%)
Query: 833 IFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMS----FFDSTPAGRILNRVSIDQSVVDL 888
+ + A + +F AA + K+ + F A M+ +FD G + R++ D S ++
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 889 DIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMA-----VACLWMQKYYMASSREL 943
I ++G F G + W++ L+++ ++ A +W + + +EL
Sbjct: 181 GIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL 240
Query: 944 VRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP------------ 991
+ K+ + E +A T+ FG +K+ ++R L+ R
Sbjct: 241 H---AYAKAGAVA--EEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISM 295
Query: 992 ------FFCSLAAIEW----LCLRMEL-LSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTY 1040
+ S A W L + E + + F VL+ +F G P++ A
Sbjct: 296 GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA--- 352
Query: 1041 GLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPEN--GTIE 1098
NAR + + + F ++NK P I+ P+N G +E
Sbjct: 353 ----NARGAAYEV-FKIIDNK------------------PSIDSFSKSGHKPDNIQGNLE 389
Query: 1099 LIDLKVRYGENLPL-VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXX 1157
++ Y + +L G+ G+ + +VG +G GKST +Q + RL +P G
Sbjct: 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSI 449
Query: 1158 XXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIV 1216
+ LR +G++ Q+P LF TI N+ E+ + EI +A+ ++ D +
Sbjct: 450 DGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
+ +T V E G S GQ+Q +++ RAL++ +IL+LDEAT+++DT ++ ++Q +
Sbjct: 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+ T IAHR+ TV ++D++ G + E L+ +K ++ KLV
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLV 622
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 185/419 (44%), Gaps = 27/419 (6%)
Query: 286 IISIVVTVPVAKVQEEYQDKLMAAKDERMRKTS-----ECLRNMRILKLQAWEDRYRIQL 340
+++IV + +A V E A KD++ + S E + N R + E ++
Sbjct: 857 LLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMY 916
Query: 341 EEMRGVEFRWLRKALYSQAFITFIFWSSPIF---VAAVTFGTSILLGAQLTAGSVLSAMA 397
+ + +R K + ITF F + ++ A FG ++ +T +VL +
Sbjct: 917 AQSLQIPYRNAMKKAHVFG-ITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFS 975
Query: 398 TFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE-ELQEDATIVLPRGMTNVAIQIEN 456
+ A+ VS I +++ E+ +T L M +Q
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSG 1035
Query: 457 AEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT 516
F + S P L G+S++V +G +A+ G G GKS+++ + ++G V L G
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 517 A-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLE 560
VSQ + +I ENI +G Y++++ A ++ + ++
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
T +GD+G LSGGQKQR+ +ARAL + I LLD+ SA+D + ++ +E +
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEAL 1214
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEA 679
A +T I + H++ + AD I+V++ G++ + G + LL + ++VS A
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 196/457 (42%), Gaps = 56/457 (12%)
Query: 281 TLIATIISIVVTVPV---AKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE---- 333
TL+ IS V+ + AK+ + DK + A + E L +R + +
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
+RY LEE + + + A S + ++S + A +GTS+++ + + G VL
Sbjct: 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS--YALAFWYGTSLVISKEYSIGQVL 328
Query: 394 SA-----MATFRILQEP--------LRNFPDLVSMMAQTKVSLDRISGFLQE-EELQEDA 439
+ + F + Q R V + K S+D S + + +Q +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGN- 387
Query: 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC 499
++ +N F + L G+++KV G VA+ G G GKS+ +
Sbjct: 388 ------------LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 500 ILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENILFGS---PMDK 543
+ + G V + G VSQ + + I ENI +G MD+
Sbjct: 436 MQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE 495
Query: 544 AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
+ K V A + ++L H T++G+RG LSGGQKQR+ +ARAL ++ I LLD+
Sbjct: 496 IE-KAVKEANAYDFIMKL-PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 604 FSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
SA+D + + + + A +T I + H++ + AD I G I++ G +D+L+
Sbjct: 554 TSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 664 QAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLD 700
+ + LV E +++ N + + DE LD
Sbjct: 613 REKGIYFKLVMTQTAGNE-IELGNEACKSKDEIDNLD 648
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 137/566 (24%), Positives = 244/566 (43%), Gaps = 58/566 (10%)
Query: 806 TEGDQPKV---NPMVLLVVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFVKMLRSVFRA 862
T G P+ N + ++++ L S F++ G ++L + +S+ R
Sbjct: 736 TNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 863 PMSFFD--STPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLVGIIGVMTMVTWQVLL 920
+S+FD G + R++ D + V RL L I + + WQ+ L
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 921 LVIPMA--VACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRF- 977
L++ + +A + + M S + L ++ S I E+I T+ +E++F
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFE 913
Query: 978 --------------MKRNLYLLDCF----ARPFFCSLAAIEWLCLRMELLSTFVFAFCMV 1019
MK+ F A +F AA + L++ + F V
Sbjct: 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAY---LVTQQLMTFENV 970
Query: 1020 LLVSFPHGAIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAP 1079
LLV F A+ +G ++S + + K I RI E
Sbjct: 971 LLV-FS-----------AIVFGAMAVGQVSSFAPDYAKATVSASHIIRII-------EKT 1011
Query: 1080 PVIEDSRPPSSWPE--NGTIELIDLKVRYGE--NLPLVLHGITCAFPGGKKIGIVGRTGS 1135
P I+ P G ++ + Y ++P VL G++ G+ + +VG +G
Sbjct: 1012 PEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGC 1070
Query: 1136 GKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL--- 1192
GKST++Q L R +P G + LR++LGI+ Q+P LF+ +I N+
Sbjct: 1071 GKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130
Query: 1193 DPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQA 1252
D S EI A ++ + + K T V + G S GQ+Q +++ RAL++Q
Sbjct: 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 1253 RILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEF 1312
IL+LDEAT+++DT ++ ++Q+ + + T IAHR+ T+ ++DL++V+ +G+V E
Sbjct: 1191 HILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250
Query: 1313 DTPGRLLEDKSSMFLKLVTEYSSRSS 1338
T +LL K F + + ++ S
Sbjct: 1251 GTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/534 (23%), Positives = 233/534 (43%), Gaps = 68/534 (12%)
Query: 833 IFVRAVLVATFGLAAAQKLFVKMLRSVFRAPMS----FFDSTPAGRILNRVSIDQSVVDL 888
+ + A + +F AA + K+ + F A M+ +FD G + R++ D S ++
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 889 DIPFRLGGFASTTIQLVGIIGVMTMVTWQVLLLVIPMA-----VACLWMQKYYMASSREL 943
I ++G F G + W++ L+++ ++ A +W + + +EL
Sbjct: 181 GIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL 240
Query: 944 VRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARP------------ 991
+ K+ + E +A T+ FG +K+ ++R L+ R
Sbjct: 241 H---AYAKAGAVA--EEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISM 295
Query: 992 ------FFCSLAAIEW----LCLRMEL-LSTFVFAFCMVLLVSFPHGAIDPSMAGLAVTY 1040
+ S A W L + E + + F VL+ +F G P++ A
Sbjct: 296 GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA--- 352
Query: 1041 GLNLNARLSRWILSFCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPEN--GTIE 1098
NAR + + + F ++NK P I+ P+N G +E
Sbjct: 353 ----NARGAAYEV-FKIIDNK------------------PSIDSFSKSGHKPDNIQGNLE 389
Query: 1099 LIDLKVRYGENLPL-VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXX 1157
++ Y + +L G+ G+ + +VG +G GKST +Q + RL +P G
Sbjct: 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSI 449
Query: 1158 XXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLD-PLEEHSDREIWEALDKSQLGDIV 1216
+ LR +G++ Q+P LF TI N+ E+ + EI +A+ ++ D +
Sbjct: 450 DGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509
Query: 1217 RGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII 1276
+ +T V E G S GQ+Q +++ RAL++ +IL+LDEAT+++DT ++ ++Q +
Sbjct: 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 1277 RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFLKLV 1330
+ T IAHR+ TV ++D++ G + E L+ +K ++ KLV
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLV 622
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 186/419 (44%), Gaps = 27/419 (6%)
Query: 286 IISIVVTVPVAKVQEEYQDKLMAAKDERMRKTS-----ECLRNMRILKLQAWEDRYRIQL 340
+++IV + +A V E A KD++ + S E + N R + E ++
Sbjct: 857 LLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMY 916
Query: 341 EEMRGVEFRWLRKALYSQAFITFIFWSSPIF---VAAVTFGTSILLGAQLTAGSVLSAMA 397
+ + +R K + ITF F + ++ AA FG ++ +T +VL +
Sbjct: 917 AQSLQIPYRNAMKKAHVFG-ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975
Query: 398 TFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEE-ELQEDATIVLPRGMTNVAIQIEN 456
+ A+ VS I +++ E+ +T L M +Q
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSG 1035
Query: 457 AEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGT 516
F + S P L G+S++V +G +A+ G G GKS+++ + ++G V L G
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 517 A-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC---SLKKDLE 560
VSQ + +I ENI +G Y++++ A ++ + ++
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
T +GD+G LSGGQKQR+ +ARAL + I LLD+ SA+D + ++ +E +
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEAL 1214
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEA 679
A +T I + H++ + AD I+V++ G++ + G + LL + ++VS A
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 198/457 (43%), Gaps = 56/457 (12%)
Query: 281 TLIATIISIVVTVPV---AKVQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWE---- 333
TL+ IS V+ + AK+ + DK + A + E L +R + +
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 334 DRYRIQLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVAAVTFGTSILLGAQLTAGSVL 393
+RY LEE + + + A S + ++S + A +GTS+++ + + G VL
Sbjct: 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS--YALAFWYGTSLVISKEYSIGQVL 328
Query: 394 SA-----MATFRILQEP--LRNFPDL------VSMMAQTKVSLDRISGFLQE-EELQEDA 439
+ + F + Q + F + V + K S+D S + + +Q +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGN- 387
Query: 440 TIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSC 499
++ +N F + L G+++KV G VA+ G G GKS+ +
Sbjct: 388 ------------LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 500 ILGEIPKISGEVRLCGT-------------AAYVSQSAWIQSGNIEENILFGS---PMDK 543
+ + G V + G VSQ + + I ENI +G MD+
Sbjct: 436 MQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE 495
Query: 544 AKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDP 603
+ K V A + ++L H T++G+RG LSGGQKQR+ +ARAL ++ I LLD+
Sbjct: 496 IE-KAVKEANAYDFIMKL-PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 604 FSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
SA+D + + + + A +T I + H++ + AD I G I++ G +D+L+
Sbjct: 554 TSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 664 QAGTDFNALVSAHHEAIEAMDIPNHSSEDSDENLTLD 700
+ + LV E +++ N + + DE LD
Sbjct: 613 REKGIYFKLVMTQTAGNE-IELGNEACKSKDEIDNLD 648
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 3/227 (1%)
Query: 1096 TIELIDLKVRY-GENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
IE D+ Y + L I P G +VG TGSGKST+ + L+R + A G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 1155 XXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCN-LDPLEEHSDREIWEALDKSQLG 1213
+ +RS +GI+PQD LF TI+ N L + +D E+ +A +QL
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 1214 DIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQ 1273
D + +K +T V G S G+RQ +++ R LLK +I++ DEAT+S+D+ T+ L Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1274 KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
K + K+ T+ IAHR+ T+ ++ +++L+ G++ E T LL+
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 450 VAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
V I+ + F + ++ TL I+ + G A+ G GSGKS++ + +L G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEG 74
Query: 510 EVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYK--KVIHACS 554
++++ G V Q + + I+ NIL+G +D + K +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQ 133
Query: 555 LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
L +E TI+G++G+ LSGG++QR+ +AR L +D I + D+ S++D+ T
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EY 192
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDF 669
LF++ + N+T+I + H++ + +A+ I++L +G+I++ G + DLL+ ++
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEY 247
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 2/185 (1%)
Query: 1127 IGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEG 1186
I G +G GKST+ L R +P G L + RS++G + QD + G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 1187 TIRCNLD-PLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSL 1244
TIR NL LE +++D ++W+ LD + V +L T V E G S GQRQ +++
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150
Query: 1245 GRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVL 1304
RA L+ +IL+LDEATAS+D+ +++++QK + + K T IAHR+ T++D+D + +
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFI 210
Query: 1305 SDGRV 1309
G++
Sbjct: 211 EKGQI 215
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 456 NAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG 515
+ +F + S L IS + +A G G GKS++ S + +GE+ + G
Sbjct: 6 HVDFAY--DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 516 TA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYK--KVIHACSLKKDLE 560
+VSQ + I +G I EN+ +G D +V+ + +E
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 561 LFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYI 620
T +G+RG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S + ++ +
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKAL 182
Query: 621 MTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +T + + H++ + AD I +++G+I +GK+++L+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IAHR+ TV ++D ++V+ G++ E LL + S++
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 232
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 59
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 117
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEH 176
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IAHR+ TV ++D ++V+ G++ E LL + S++
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 238
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 8 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 65
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEH 182
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IAHR+ TV ++D ++V+ G++ E LL + S++
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 234
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 4 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 61
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 119
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEH 178
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 106 bits (265), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR GSGKSTL + + R P G+
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IAHR+ TV ++D ++V+ G++ E LL + S++
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 234
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 4 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE-NGQ 61
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 119
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 180 IMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ D+AT+++D ++++I + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IAHR+ TV ++D ++V+ G++ E LL + S++
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 238
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 8 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 65
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D SA+D +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + + +TVI + H++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 184 IMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IA R+ TV ++D ++V+ G++ E LL + S++
Sbjct: 186 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 232
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 59
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 117
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEH 176
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +TVI + ++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 177 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 1/227 (0%)
Query: 1101 DLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX 1160
+++ RY + P++L I + G+ IGIVGR+GSGKSTL + + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1161 XXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLEEH-SDREIWEALDKSQLGDIVRGK 1219
+ LR ++G++ QD L +I N+ S ++ A + D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTE 1279
+ T V E G S GQRQ +++ RAL+ +IL+ DEAT+++D ++++I + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 1280 FKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMF 1326
K TV IA R+ TV ++D ++V+ G++ E LL + S++
Sbjct: 192 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 238
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 22/229 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I N F + P S L I++ + +G + + G GSGKS+L I IP+ +G+
Sbjct: 8 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQ 65
Query: 511 VRLCGTAAYVSQSAWIQ-------------SGNIEENILFGSPMDKAKYKKVIHACSLKK 557
V + G ++ W++ + +I +NI +P +KVI+A L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 558 DLELFSH---GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ S G TI+G++G LSGGQ+QR+ +ARAL + I + D+ SA+D +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEH 182
Query: 615 LFKEYIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLL 663
+ + +TVI + ++ + AD I+V+++G+I++ GK+ +LL
Sbjct: 183 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 12/258 (4%)
Query: 1055 FCKLENKIISIERIYQYSQIPGEAPPVIEDSRPPSSWPENGTIELIDLKVRYGENLPLVL 1114
F +EN ++ + +PG P + R IE ++ Y + L
Sbjct: 22 FIDMENMFDLLKEETEVKDLPGAGPLRFQKGR----------IEFENVHFSYADGRE-TL 70
Query: 1115 HGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRL 1174
++ G+ + +VG +G+GKST+++ LFR + + G LRS +
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1175 GIIPQDPNLFEGTIRCNLDPLE-EHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDN 1233
G++PQD LF TI N+ + E+ A + + D + + T V E G
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 1234 WSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIP 1293
S G++Q V++ R +LK I++LDEAT+++DT+ + IQ + + T +AHR+
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 1294 TVIDSDLVLVLSDGRVAE 1311
TV+++D +LV+ DG + E
Sbjct: 251 TVVNADQILVIKDGCIVE 268
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 17/260 (6%)
Query: 421 VSLDRISGFLQEEELQEDATIVLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRG 480
+ ++ + L+EE +D P I+ EN F + + R TL +S V G
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPG 80
Query: 481 MRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA-AYVSQSAWIQSGNI--EENILF 537
+A+ G G+GKS++L + SG +R+ G + V+Q++ + ++ +LF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 538 GSPM-DKAKYKKVI----------HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQ 586
+ D +Y +V A + + F G +T +G+RG+ LSGG+KQRV
Sbjct: 141 NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA 200
Query: 587 LARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADFIL 646
+AR + + I LLD+ SA+D + + + AN+T I V H++ + AD IL
Sbjct: 201 IARTILKAPGIILLDEATSALDT-SNERAIQASLAKVCANRTTIVVAHRLSTVVNADQIL 259
Query: 647 VLKEGRIIQAGKYDDLLQAG 666
V+K+G I++ G+++ LL G
Sbjct: 260 VIKDGCIVERGRHEALLSRG 279
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 15/236 (6%)
Query: 1095 GTIELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
G ++ D+ Y N P VL G+T GK +VG GSGKST+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1153 GRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL------DPLEEHSDREIWEA 1206
G+ H L +++ + Q+P LF + R N+ P E EI
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME----EITAV 129
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+S D + G Q +T V E G+ S GQRQ V+L RAL+++ R+L+LD+AT+++D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 1267 ATDNLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+Q+++ E+ TV I H++ + +L L +G V E T +L+E
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 24/242 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++ ++ F + + L G++ + G A+ G GSGKS++ + + G+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
L G A V Q + + ENI +G + + + I A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 559 ----LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ F G T +G+ G LSGGQ+Q V LARAL + + +LD SA+DA G++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQ 192
Query: 615 LFKE---YIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
L + Y A++TV+ +THQ+ A IL LKEG + + G + L++ G + +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 672 LV 673
+V
Sbjct: 253 MV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 1095 GTIELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
G ++ D+ Y N P VL G+T GK +VG GSGKST+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1153 GRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL------DPLEEHSDREIWEA 1206
G+ H L +++ + Q+P LF + R N+ P E EI
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME----EITAV 129
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+S D + G Q +T V E G+ +VGQRQ V+L RAL+++ R+L+LD AT+++D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1267 ATDNLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+Q+++ E+ TV I ++ + +L L +G V E T +L+E
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 24/242 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++ ++ F + + L G++ + G A+ G GSGKS++ + + G+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
L G A V Q + + ENI +G + + + I A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 559 ----LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ F G T +G+ G L+ GQ+Q V LARAL + + +LD+ SA+DA G++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQ 192
Query: 615 LFKE---YIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
L + Y A++TV+ +T Q+ A IL LKEG + + G + L++ G + +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 672 LV 673
+V
Sbjct: 253 MV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 15/236 (6%)
Query: 1095 GTIELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAC 1152
G ++ D+ Y N P VL G+T GK +VG GSGKST+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1153 GRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL------DPLEEHSDREIWEA 1206
G+ H L +++ + Q+P LF + R N+ P E EI
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME----EITAV 129
Query: 1207 LDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+S D + G Q +T V E G+ S GQRQ V+L RAL+++ R+L+LD AT+++D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1267 ATDNLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+Q+++ E+ TV I ++ + +L L +G V E T +L+E
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 24/242 (9%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
++ ++ F + + L G++ + G A+ G GSGKS++ + + G+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 512 RLCG-------------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
L G A V Q + + ENI +G + + + I A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 559 ----LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
+ F G T +G+ G LSGGQ+Q V LARAL + + +LD+ SA+DA G++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQ 192
Query: 615 LFKE---YIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
L + Y A++TV+ +T Q+ A IL LKEG + + G + L++ G + +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 672 LV 673
+V
Sbjct: 253 MV 254
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 27/228 (11%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGE 510
I+IE+ W S L +S+KV+ G + G G+GK+ L I G +P SG
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGR 56
Query: 511 VRLCGT-----------AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKD 558
+ L G A+V Q+ + N+++N+ FG M K K K + +D
Sbjct: 57 ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV--LDTARD 114
Query: 559 LELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE 618
L++ + ++ + LSGG++QRV LARAL + I LLD+P SA+D T +
Sbjct: 115 LKI-----EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169
Query: 619 YIMTALANK-TVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQ 664
+ NK TV+ +TH Q E AD I V+ +G++IQ GK +++ +
Sbjct: 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSR 1173
L ++ G+ I+G TG+GK+ ++ + P GR L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHD 73
Query: 1174 LGIIPQDPNLF-EGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGD 1232
+ + Q+ +LF ++ NL+ + + D ++ D R D K+E + N
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLE-----FGMRMKKIKDPKRVLDTAR--DLKIEHLLDRNPL 126
Query: 1233 NWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK--DCTVCTIAH 1290
S G++Q V+L RAL+ +IL+LDE +++D T ++++ K TV I H
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 1291 -RIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+ I +D + V+ DG++ + P + E
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 7/235 (2%)
Query: 1094 NGTIELIDLKVRYGENLP--LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA 1151
G ++ D+ Y N P LVL G+T G+ +VG GSGKST+ L L +P
Sbjct: 12 EGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1152 CGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNL--DPLEEHSDREIWEALDK 1209
G+ L ++ + Q+P +F +++ N+ ++ + EI A K
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1210 SQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD 1269
S + G Q +T V E G S GQRQ V+L RAL+++ +L+LD+AT+++D +
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1270 NLIQKII--RTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDK 1322
+++++ E +V I + V +D +L L G + E T +L+E K
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 245
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 452 IQIENAEFCWYPSSSRP---TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
+Q ++ F YP+ RP L G++ + G A+ G GSGKS++ + +
Sbjct: 15 VQFQDVSFA-YPN--RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 509 GEVRLCGTA-------------AYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACSL 555
G++ L G A V Q + +++ENI +G + + + I A ++
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYG--LTQKPTMEEITAAAV 129
Query: 556 KKDLELF----SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT 611
K F G T + + G LSGGQ+Q V LARAL + + +LDD SA+DA+
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN- 188
Query: 612 GSELFKE---YIMTALANKTVIFVTHQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
S+L E Y +++V+ +T + + AD IL L+ G I + G + L++
Sbjct: 189 -SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 247
Query: 669 FNALVSAHHEAIE 681
+ A+V A +A E
Sbjct: 248 YWAMVQAPADAPE 260
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 36/233 (15%)
Query: 462 YPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG------ 515
YP +R ++ G+S ++ G V + G GSGK+++L I G G+V + G
Sbjct: 24 YPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL 82
Query: 516 -----TAAYVSQS-AWIQSGNIEENILFG-----SPMDK--AKYKKVIHACSLKKDLELF 562
V Q+ A Q + +N+ FG P D+ A+ ++++ L+ F
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL--FKEYI 620
H LSGGQ+QRV LARAL + L D+PF+A+D EL F +
Sbjct: 143 PH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191
Query: 621 MTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQA-GTDFNA 671
+ T +FVTH Q E L AD +LVL EG + Q G +++ + GT F A
Sbjct: 192 HDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 15/238 (6%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRX 1155
TIE + ++ Y V G++ G+ +G++G +GSGK+T+++ + L P G
Sbjct: 14 TIEFVGVEKIYPGGARSV-RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG-- 70
Query: 1156 XXXXXXXXXXGLHDLRSRLGIIPQDPNLFEG-TIRCNLDPLEEHSDREIWEALDKSQLGD 1214
L + +G++ Q+ LF+ T+ N+ RE + + K ++
Sbjct: 71 DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVS----FGLRE--KRVPKDEMDA 124
Query: 1215 IVRG--KDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLI 1272
VR + +LE+ S GQ+Q V+L RAL + ++L+ DE A++DT +
Sbjct: 125 RVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 1273 QKIIRTEFKDCTVCT--IAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
+ +R + V + + H ++ +D VLVL +G V +F TP + E ++F+
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFV 242
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 27/216 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAA----------Y 519
L ++ + + G V G GSGK++LL + G + +GE+ L G+ A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 520 VSQ--SAWIQSGNIEENILFG---SPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
V Q S+ I +EE++ F +D+++ +K I KK LEL G +
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRI-----KKVLELV--GLSGLAAADP 138
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFV 632
+NLSGGQKQR+ +A L +D LD+P S +D + E+F+ ++ +L N K +I V
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ--VLESLKNEGKGIILV 196
Query: 633 THQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
TH++E+L DFIL + G I G +++ ++ D
Sbjct: 197 THELEYLDDMDFILHISNGTIDFCGSWEEFVEREFD 232
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
IEL + RY N VL + F GK +VG+ GSGK+TL++ L L+ A G
Sbjct: 12 IELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF 68
Query: 1157 XXXXXXXXXGLHDLRSRLGIIPQDPN------LFEGTIRCNLDPLEEHSDREIWEALDKS 1210
LR +G + Q+P+ E + +L+ + LD+S
Sbjct: 69 LDGSPADP---FLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM----------GLDES 115
Query: 1211 QLGDIVRGKDQKLETPVLENGD--NWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
++ ++ + + L D N S GQ+Q +++ L + R L LDE + +D +
Sbjct: 116 EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 1269 DNLIQKIIRT-EFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
I +++ + + + + + H + + D D +L +S+G +
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 468 PTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAW-- 525
P L+ IS+ +D G + + G G GK++LL C+ G SGE+ L G + +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 526 --------IQSG------NIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIG 571
+Q G + NI +G + K + ++ LEL G + G
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELT--GISELAG 133
Query: 572 DRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN-KTVI 630
LSGGQ+QR LARAL D ++ LLD+PFSA+D ++ ++ I AN K+ +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 631 FVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTDFNA 671
FV+H + E L AD I V+K+GRI+Q +L + D +A
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDA 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----------TAA 518
L+ I++K+ G +A+ G GSGKS+LL I G SG++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 519 YVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINL 577
V Q+ A + +NI F + KA +++ +++ H D+ ++ L
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV---REVAKMLHIDK-LLNRYPWQL 134
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVTH 634
SGGQ+QRV +ARAL ++ ++ LLD+P S +DA E+ E + L + T ++VTH
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE--LKRLQKELGITTVYVTH 192
Query: 635 -QVEFLPAADFILVLKEGRIIQAGKYDDL 662
Q E L AD I V++EG I+Q G D++
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSR 1173
L+ I G+ + ++G +GSGKSTL+ + + +P G+ D
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 1174 LGIIPQDPNLF-EGTIRCNLD-PLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENG 1231
+G++ Q+ L+ T+ N+ PLE E +DK VR + L L N
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPR--EEIDKK-----VREVAKMLHIDKLLNR 129
Query: 1232 DNW--SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD------- 1282
W S GQ+Q V++ RAL+K+ +L+LDE +++D L++ +R E K
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA----LLRLEVRAELKRLQKELGI 185
Query: 1283 CTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTP 1315
TV + + +D + V+ +G + + TP
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-- 508
++Q++N W I++ + G V G G GKS+LL I G + I+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSG 58
Query: 509 ----GEVRLCGT------AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
GE R+ T V QS A ++ EN+ FG + AK + + +
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
++ +H ++ + LSGGQ+QRV + R L + ++LLD+P S +DA ++
Sbjct: 119 EVLQLAH----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 618 EYI-MTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
E + +T+I+VTH QVE + AD I+VL GR+ Q GK +L D
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAH-R 1291
S GQRQ V++GR L+ + + +LDE +++D A ++ I K T+ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
+ + +D ++VL GRVA+ P L + F+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-- 508
++Q++N W I++ + G V G G GKS+LL I G + I+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSG 58
Query: 509 ----GEVRLCGT------AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
GE R+ T V QS A ++ EN+ FG + AK + + +
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
++ +H ++ + LSGGQ+QRV + R L + ++LLD+P S +DA ++
Sbjct: 119 EVLQLAH----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 618 EYI-MTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
E + +T+I+VTH QVE + AD I+VL GR+ Q GK +L D
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAH-R 1291
S GQRQ V++GR L+ + + +LDE +++D A ++ I K T+ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
+ + +D ++VL GRVA+ P L + F+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 23/233 (9%)
Query: 451 AIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS-- 508
++Q++N W I++ + G V G G GKS+LL I G + I+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSG 58
Query: 509 ----GEVRLCGT------AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKK 557
GE R+ T V QS A ++ EN+ FG + AK + + +
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
++ +H ++ + LSGGQ+QRV + R L + ++LLD P S +DA ++
Sbjct: 119 EVLQLAH----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRI 174
Query: 618 EYI-MTALANKTVIFVTH-QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGTD 668
E + +T+I+VTH QVE + AD I+VL GR+ Q GK +L D
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDC--TVCTIAH-R 1291
S GQRQ V++GR L+ + + +LD+ +++D A ++ I K T+ + H +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1292 IPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
+ + +D ++VL GRVA+ P L + F+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 39/220 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEV----RLCGTA------- 517
L +++ ++ G R + G G+GK++ + I G ++P +GE+ RL +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVPP 79
Query: 518 -----AYVSQSAWIQSGNIE--ENILF---GSPMDKAKYKKVIHACSLKKDL-ELFSHGD 566
V Q+ W N+ ENI F M K + +K + + D+ + +H
Sbjct: 80 EDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---TGSELFKEYIMTA 623
+ LSGGQ+QRV LARAL +D + LLD+PFS +DA + L KE + +
Sbjct: 139 R--------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE--VQS 188
Query: 624 LANKTVIFVTHQ-VEFLPAADFILVLKEGRIIQAGKYDDL 662
T++ V+H + AD + VL +G+++Q GK +DL
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLR 1171
+ L + G++ GI+G +G+GK+T ++ + L P+ G G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1172 SRLGIIPQD-------------PNL--FEGTI--RCNLDPLEEHSDREIWEALDKSQLGD 1214
+L + P+D PNL FE N+ +E + + E +
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
++ ++L S GQ+Q V+L RAL+K +L+LDE +++D + +
Sbjct: 133 VLNHFPREL-----------SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 1275 IIRTEFKD---CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
+++ E + T+ ++H + +D V VL G++ + P L ++ S+
Sbjct: 182 LVK-EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 26/241 (10%)
Query: 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
++PRG + +Q+ + S L GI++ + G V V G GSGKS+ L C+
Sbjct: 14 LVPRG--SHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
Query: 502 GEIPKISGEVRLCGTAAYVSQSAW----------IQSGNI--EENILFGSPMDKAKYKKV 549
GE+ + G + Q N+ +L + K +K
Sbjct: 72 LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW 131
Query: 550 IHACSLKKDLELFSHGDQTIIGDRGI----NLSGGQKQRVQLARALYQDADIYLLDDPFS 605
+ K +EL D+ + D+ +LSGGQ QRV +ARAL + I L D+P S
Sbjct: 132 PREKAEAKAMELL---DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 606 AVDAHTGSELFKEYIMTALANK--TVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDL 662
A+D E+ +M LAN+ T++ VTH++ F D +L + G II+ GK +DL
Sbjct: 189 ALDPEMVGEVLS--VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Query: 663 L 663
Sbjct: 247 F 247
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXX--XXXXXXXXGLHDL 1170
VL GI G+ + ++G +GSGKST ++ L L + G L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1171 RSRLGIIPQDPNLFEGTIRCN---LDPLE------EHSDREIWEALDKSQLGDIVRGKDQ 1221
R +G++ Q NLF N L P++ E ++ + E LDK L KD+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL------KDK 152
Query: 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK 1281
P D+ S GQ Q V++ RAL + +I++ DE T+++D + +++
Sbjct: 153 AHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1282 D-CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE----DKSSMFLKLV 1330
+ T+ + H + + D VL + G + E P L + +++ FL V
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKV 262
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 465 SSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSA 524
S L GI++ + G V V G GSGKS+ L C+ GE+ + G +
Sbjct: 14 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 73
Query: 525 W----------IQSGNI--EENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGD 572
Q N+ +L + K +K + K +EL D+ + D
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL---DKVGLKD 130
Query: 573 RGI----NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK- 627
+ +LSGGQ QRV +ARAL + I L D+P SA+D E+ +M LAN+
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEG 188
Query: 628 -TVIFVTHQVEFL-PAADFILVLKEGRIIQAGKYDDLL 663
T++ VTH++ F D +L + G II+ GK +DL
Sbjct: 189 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXX--XXXXXXXGLHDL 1170
VL GI G+ + ++G +GSGKST ++ L L + G L+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1171 RSRLGIIPQDPNLFEGTIRCN---LDPLE------EHSDREIWEALDKSQLGDIVRGKDQ 1221
R +G++ Q NLF N L P++ E ++ + E LDK L KD+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL------KDK 131
Query: 1222 KLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK 1281
P D+ S GQ Q V++ RAL + +I++ DE T+++D + +++
Sbjct: 132 AHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1282 D-CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLE----DKSSMFLKLV 1330
+ T+ + H + + D VL + G + E P L + +++ FL V
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKV 241
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 39/220 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG-EIPKISGEV----RLCGTA------- 517
L +++ ++ G R + G G+GK++ + I G ++P +GE+ RL +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVPP 79
Query: 518 -----AYVSQSAWIQSGNIE--ENILF---GSPMDKAKYKKVIHACSLKKDL-ELFSHGD 566
V Q+ W N+ ENI F M K + +K + + D+ + +H
Sbjct: 80 EDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH---TGSELFKEYIMTA 623
+ LSG Q+QRV LARAL +D + LLD+PFS +DA + L KE + +
Sbjct: 139 R--------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE--VQS 188
Query: 624 LANKTVIFVTHQ-VEFLPAADFILVLKEGRIIQAGKYDDL 662
T++ V+H + AD + VL +G+++Q GK +DL
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 39/235 (16%)
Query: 1112 LVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLR 1171
+ L + G++ GI+G +G+GK+T ++ + L P+ G G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1172 SRLGIIPQD-------------PNL--FEGTI--RCNLDPLEEHSDREIWEALDKSQLGD 1214
+L + P+D PNL FE N+ +E + + E +
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQK 1274
++ ++L S Q+Q V+L RAL+K +L+LDE +++D + +
Sbjct: 133 VLNHFPREL-----------SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 1275 IIRTEFKD---CTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDTPGRLLEDKSSM 1325
+++ E + T+ ++H + +D V VL G++ + P L ++ S+
Sbjct: 182 LVK-EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 35/252 (13%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDL--- 1170
L+ ++ P G+ G++G +G+GKSTLI+ + L P G +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1171 RSRLGIIPQDPNLFEG-TIRCNLD-PLE------EHSDREIWEALDKSQLGDIVRGKDQK 1222
R ++G+I Q NL T+ N+ PLE + R + E L LGD +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD------KH 134
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK- 1281
P N S GQ+Q V++ RAL ++L+ DEAT+++D AT I ++++ +
Sbjct: 135 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1282 -DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT-------PGRLLEDK---SSMFLKL 1329
T+ I H + V D V V+S+G + E DT P L K S++ L +
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDI 249
Query: 1330 VTEYSSRSSGIP 1341
+Y R P
Sbjct: 250 PEDYQERLQAEP 261
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 49/278 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCGTA-AYVSQS---- 523
L+ +S+ V G V G G+GKS+L+ C+ L E P G V + G +S+S
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 79
Query: 524 AWIQSGNIEENI-------LFG----------SPMDKAKYKKVIHACSLKKDLELFSHGD 566
A Q G I ++ +FG +P D+ K + + + L L GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-------VTELLSLVGLGD 132
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTA 623
+ NLSGGQKQRV +ARAL + + L D+ SA+D T EL K+ +
Sbjct: 133 KH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD--INR 188
Query: 624 LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEA 682
T++ +TH+++ + D + V+ G +I+ ++ L ++
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK--TPLAQKFIQSTLH 246
Query: 683 MDIPNHSSEDSDENLTLD---GCVIPCKKCDASGDNID 717
+DIP ED E L + CV P + + +G ++D
Sbjct: 247 LDIP----EDYQERLQAEPFTDCV-PMLRLEFTGQSVD 279
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I++ N ++ + + L +S+ ++ G + V G GSGKS+LL + G I SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 510 EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS--------------- 554
+V G + + NI I F P D+ ++V +
Sbjct: 63 DVLYDGE----RKKGYEIRRNI--GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 116
Query: 555 LKKDLELFSHGDQTIIGDR-GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
+KK +E F D DR LSGG+K+RV +A + + DI +LD+P +D +
Sbjct: 117 VKKAME-FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 614 ELFKEYIMTALANKTVIFVTHQVE-FLPAADFILVLKEGRIIQAGKYDDLLQ 664
+L + KTVI ++H +E + D ++VL++G+ + G + L+
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 35/230 (15%)
Query: 1097 IELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACG 1153
IE++++ + PL L ++ G+ + + G TGSGKSTL+Q + LIEP G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1154 RXXXXXXXXXXXGLHDLRSRLGI---IPQDPNLFE----------GTIRCNLDPLEEHSD 1200
+++R +GI P+D E + DP+
Sbjct: 63 DVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1201 REIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEA 1260
+ LD D V P +G G+++ V++ ++ + IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRV---------PFFLSG-----GEKRRVAIASVIVHEPDILILDEP 165
Query: 1261 TASVD-TATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGR 1308
+D +L++ + + + TV I+H I TVI+ D V+VL G+
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 452 IQIENAEFCWYPSS--SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISG 509
I++ N ++ + + L +S+ ++ G + V G GSGKS+LL + G I SG
Sbjct: 5 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 64
Query: 510 EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS--------------- 554
+V G + + NI I F P D+ ++V +
Sbjct: 65 DVLYDGE----RKKGYEIRRNI--GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 555 LKKDLELFSHGDQTIIGDR-GINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS 613
+KK +E F D DR LSGG+K+RV +A + + DI +LD+P +D +
Sbjct: 119 VKKAME-FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 177
Query: 614 ELFKEYIMTALANKTVIFVTHQVE-FLPAADFILVLKEGRIIQAGKYDDLLQ 664
+L + KTVI ++H +E + D ++VL++G+ + G + L+
Sbjct: 178 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 229
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 1095 GTIELIDLKVRYGENLPL---VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPA 1151
G IE++++ + PL L ++ G+ + + G TGSGKSTL+Q + LIEP
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1152 CGRXXXXXXXXXXXGLHDLRSRLGI---IPQDPNLFE----------GTIRCNLDPLEEH 1198
G +++R +GI P+D E + DP+
Sbjct: 63 SGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 1199 SDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLD 1258
+ LD D V P +G G+++ V++ ++ + IL+LD
Sbjct: 120 KKAMEFVGLDFDSFKDRV---------PFFLSG-----GEKRRVAIASVIVHEPDILILD 165
Query: 1259 EATASVD-TATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGR 1308
E +D +L++ + + + TV I+H I TVI+ D V+VL G+
Sbjct: 166 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 217
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 35/252 (13%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDL--- 1170
L+ ++ P G+ G++G +G+GKSTLI+ + L P G +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1171 RSRLGIIPQDPNLFEG-TIRCNLD-PLE------EHSDREIWEALDKSQLGDIVRGKDQK 1222
R ++G+I Q NL T+ N+ PLE + R + E L LGD +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD------KH 157
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK- 1281
P N S GQ+Q V++ RAL ++L+ D+AT+++D AT I ++++ +
Sbjct: 158 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1282 -DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT-------PGRLLEDK---SSMFLKL 1329
T+ I H + V D V V+S+G + E DT P L K S++ L +
Sbjct: 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDI 272
Query: 1330 VTEYSSRSSGIP 1341
+Y R P
Sbjct: 273 PEDYQERLQAEP 284
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 49/278 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCGTA-AYVSQS---- 523
L+ +S+ V G V G G+GKS+L+ C+ L E P G V + G +S+S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 524 AWIQSGNIEENI-------LFG----------SPMDKAKYKKVIHACSLKKDLELFSHGD 566
A Q G I ++ +FG +P D+ K + + + L L GD
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-------VTELLSLVGLGD 155
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTA 623
+ NLSGGQKQRV +ARAL + + L D SA+D T EL K+ +
Sbjct: 156 KH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD--INR 211
Query: 624 LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEA 682
T++ +TH+++ + D + V+ G +I+ ++ L ++
Sbjct: 212 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK--TPLAQKFIQSTLH 269
Query: 683 MDIPNHSSEDSDENLTLD---GCVIPCKKCDASGDNID 717
+DIP ED E L + CV P + + +G ++D
Sbjct: 270 LDIP----EDYQERLQAEPFTDCV-PMLRLEFTGQSVD 302
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 95/213 (44%), Gaps = 23/213 (10%)
Query: 470 LSGISMKVDRGMRVAVC---GMVGSGKSSLLSCILGEIPKISGEVRLCGT---------- 516
L + VD M C G G+GKS L I G + GEVRL G
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 517 -AAYVSQS-AWIQSGNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
+V Q A ++ NI +G + + ++ + + L G ++ +
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGL-RNVERVERDRRVREMAEKL-----GIAHLLDRKP 124
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEY-IMTALANKTVIFVT 633
LSGG++QRV LARAL + LLD+P SAVD T L +E + + ++ VT
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 634 HQ-VEFLPAADFILVLKEGRIIQAGKYDDLLQA 665
H +E AD + V+ GRI++ GK +L A
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 30/196 (15%)
Query: 1129 IVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGT- 1187
++G TG+GKS ++ + +++P R L R +G +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 1188 --------IRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQR 1239
+R + RE+ E L + L D P +G G+R
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD---------RKPARLSG-----GER 132
Query: 1240 QLVSLGRALLKQARILVLDEATASVDTATDNLIQ---KIIRTEFKDCTVCTIAHR-IPTV 1295
Q V+L RAL+ Q R+L+LDE ++VD T ++ + ++ EF D + + H I
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAA 191
Query: 1296 IDSDLVLVLSDGRVAE 1311
+ +D V V+ +GR+ E
Sbjct: 192 MLADEVAVMLNGRIVE 207
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 458 EFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV------ 511
E + S L GI+M + RG A+ G G GKS+L G + SG +
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71
Query: 512 ---------RLCGTAAYVSQSAWIQ--SGNIEENILFGS-----PMDKAKYKKVIHACSL 555
+L + V Q Q S ++ +++ FG+ P D+ + K+V +A
Sbjct: 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR-KRVDNA--- 127
Query: 556 KKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSEL 615
L G + + LS GQK+RV +A L + + +LD+P + +D SE+
Sbjct: 128 -----LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 616 FKEYI-MTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
K + M T+I TH ++ +P D + V+KEGR+I G
Sbjct: 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXX--XXXXXGLHDLR 1171
L GI G+ I+G G GKSTL Q +++P+ GR G+ LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1172 SRLGIIPQDPN--LFEGTI-------RCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQK 1222
+GI+ QDP+ LF ++ N+ E+ + + AL ++ + + KD+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHL---KDKP 140
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD 1282
S GQ++ V++ L+ + ++L+LDE TA +D + I K++ K+
Sbjct: 141 THC--------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1283 --CTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
T+ H I V + D V V+ +GRV P + +K
Sbjct: 193 LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 35/252 (13%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDL--- 1170
L+ ++ P G+ G++G +G+GKSTLI+ + L P G +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1171 RSRLGIIPQDPNLFEG-TIRCNLD-PLE------EHSDREIWEALDKSQLGDIVRGKDQK 1222
R ++G I Q NL T+ N+ PLE + R + E L LGD +
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD------KH 157
Query: 1223 LETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFK- 1281
P N S GQ+Q V++ RAL ++L+ D+AT+++D AT I ++++ +
Sbjct: 158 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1282 -DCTVCTIAHRIPTVID-SDLVLVLSDGRVAEFDT-------PGRLLEDK---SSMFLKL 1329
T+ I H V D V V+S+G + E DT P L K S++ L +
Sbjct: 213 LGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDI 272
Query: 1330 VTEYSSRSSGIP 1341
+Y R P
Sbjct: 273 PEDYQERLQAEP 284
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 49/278 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCI-LGEIPKISGEVRLCGTA-AYVSQS---- 523
L+ +S+ V G V G G+GKS+L+ C+ L E P G V + G +S+S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 524 AWIQSGNIEENI-------LFG----------SPMDKAKYKKVIHACSLKKDLELFSHGD 566
A Q G I ++ +FG +P D+ K + + + L L GD
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-------VTELLSLVGLGD 155
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTA 623
+ NLSGGQKQRV +ARAL + + L D SA+D T EL K+ +
Sbjct: 156 KH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD--INR 211
Query: 624 LANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEA 682
T++ +TH+ + + D + V+ G +I+ ++ L ++
Sbjct: 212 RLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPK--TPLAQKFIQSTLH 269
Query: 683 MDIPNHSSEDSDENLTLD---GCVIPCKKCDASGDNID 717
+DIP ED E L + CV P + + +G ++D
Sbjct: 270 LDIP----EDYQERLQAEPFTDCV-PXLRLEFTGQSVD 302
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 449 NVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS 508
N A+ +EN F Y + ++ +++G +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGF--YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 509 GEVRLCGTAAYVSQSAWIQSGNIEENILFGSP-----MDKAKYKKVIHACSLKKD----- 558
G++ + + +V Q F SP +D + H + K
Sbjct: 60 GKIEVYQSIGFVPQ-------------FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 559 ---LELFSHGDQTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSE 614
++ + + T + R +LSGGQ+Q + +ARA+ + + LLD+P SA+D
Sbjct: 107 QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 615 LFKEYIMTALA-NKTVIFVTHQ 635
+ I A + N TV+F THQ
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQ 188
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQ---- 1179
G + ++G+ G GKSTL+ L + P G+ ++ +G +PQ
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFVPQFFSS 77
Query: 1180 -------DPNLFEGTIRCNLDPLEEHSDREI-WEALDKSQLGDIVRGKDQKLETPVLENG 1231
D L + N + D ++ +ALD L + + + L
Sbjct: 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL-------- 129
Query: 1232 DNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKII--RTEFKDCTVCTIA 1289
S GQRQL+ + RA+ + ++++LDE T+++D A +++ ++ + ++ TV
Sbjct: 130 ---SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 1290 HRIPTVI 1296
H+ V+
Sbjct: 187 HQPNQVV 193
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
D+ G ++LSGGQ+QRV +ARAL + D+ L D+P SA+D E+ + IM LA
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR--IMQQLA 200
Query: 626 N--KTVIFVTHQVEFL-PAADFILVLKEGRIIQAG 657
KT++ VTH++ F + ++ L +G+I + G
Sbjct: 201 EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 40/260 (15%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
+ +IDL RYG + VL G++ G I I+G +GSGKST ++ + L +P+ G
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1157 XXXXXXXXXGLHD-------------LRSRLGIIPQDPNL------FEGTIRCNLD--PL 1195
D LR+RL ++ Q NL E + + L
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 1196 EEHSDRE-IWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARI 1254
+H RE + L K + + +GK PV + S GQ+Q VS+ RAL + +
Sbjct: 125 SKHDARERALKYLAKVGIDERAQGK-----YPV-----HLSGGQQQRVSIARALAMEPDV 174
Query: 1255 LVLDEATASVDTATDNLIQKIIRTEFKDC-TVCTIAHRIPTVID-SDLVLVLSDGRVAEF 1312
L+ DE T+++D + +I++ ++ T+ + H + S V+ L G++ E
Sbjct: 175 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234
Query: 1313 DTPGRLLEDKSS----MFLK 1328
P ++ + S FLK
Sbjct: 235 GDPEQVFGNPQSPRLQQFLK 254
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQSG 529
+ G+S +V G VA+ G G GK++ L + G SGE+ + + G
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78
Query: 530 ------------NIEENILF---GSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRG 574
+ ENI F + K + +K + + K ++ ++ +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-------NLLDRKP 131
Query: 575 INLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKE--YIMTALANKTVIFV 632
LSGGQ+QRV LARAL + + L D+P S +DA+ + E ++ L T ++V
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYV 190
Query: 633 TH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
TH Q E + A I V +G+++Q G D++
Sbjct: 191 THDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 118/250 (47%), Gaps = 40/250 (16%)
Query: 1096 TIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRX 1155
+I +++LK +G+ + G++ G+ + ++G +G GK+T + L + +P G
Sbjct: 3 SIRVVNLKKYFGKVK--AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 1156 XXXXXXXXXXGLHDLRSR---LGIIPQDPNLFEG-TIRCNLD-PL------EEHSDREIW 1204
++D+ + +G++ Q+ L+ T+ N+ PL ++ ++ +
Sbjct: 61 YFDDVL-----VNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 1205 EALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASV 1264
E K + +++ K +L S GQ+Q V+L RAL+KQ ++L+ DE +++
Sbjct: 116 EIARKLLIDNLLDRKPTQL-----------SGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 1265 DTATDNLIQKIIRTEFKD------CTVCTIAH-RIPTVIDSDLVLVLSDGRVAEFDTPGR 1317
D ++ I+R E K T + H + + + + V + G++ ++ TP
Sbjct: 165 DAN----LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220
Query: 1318 LLEDKSSMFL 1327
+ + +MF+
Sbjct: 221 VYDSPKNMFV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------T 516
++ +++ + G + + G G GK++ L I G G + +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 517 AAYVSQSAWIQSGNIEENILFGSPMDKAKY------KKVIHACSLKKDLELFSHGDQTII 570
+ S + W + ENI F P+ K+ K+V A L + EL +
Sbjct: 87 MVFQSYAVWPHM-TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNR------ 137
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--- 627
LSGGQ+QRV +ARA+ + D+ L+D+P S +DA + E + L K
Sbjct: 138 --YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKV 193
Query: 628 TVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
T I+VTH QVE + D I V+ G+++Q G
Sbjct: 194 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 113/247 (45%), Gaps = 36/247 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
++L +L R+G N V + + G+ + ++G +G GK+T ++ + L EP GR
Sbjct: 12 VKLENLTKRFG-NFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1157 XXXXXXXXXGLHDLRSRLGIIPQDPNL---FEG-------TIRCNLD-PLEEHSDREIWE 1205
G D+ + P+D N+ F+ T+ N+ PL+ +
Sbjct: 70 F--------GDRDVTY---LPPKDRNISMVFQSYAVWPHMTVYENIAFPLK-------IK 111
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLEN--GDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
K ++ VR + L+ L N S GQRQ V++ RA++ + +L++DE ++
Sbjct: 112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 1264 VDTATDNLIQ---KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+D ++ K ++ + K T+ ++ + D + V++ G++ + +P +
Sbjct: 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
Query: 1321 DKSSMFL 1327
+S+F+
Sbjct: 232 RPNSVFV 238
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-------------T 516
++ +++ + G + + G G GK++ L I G G + +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 517 AAYVSQSAWIQSGNIEENILFGSPMDKAKY------KKVIHACSLKKDLELFSHGDQTII 570
+ S + W + ENI F P+ K+ K+V A L + EL +
Sbjct: 88 MVFQSYAVWPHM-TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNR------ 138
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK--- 627
LSGGQ+QRV +ARA+ + D+ L+D+P S +DA + E + L K
Sbjct: 139 --YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKV 194
Query: 628 TVIFVTH-QVEFLPAADFILVLKEGRIIQAG 657
T I+VTH QVE + D I V+ G+++Q G
Sbjct: 195 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 113/247 (45%), Gaps = 36/247 (14%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
++L +L R+G N V + + G+ + ++G +G GK+T ++ + L EP GR
Sbjct: 13 VKLENLTKRFG-NFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70
Query: 1157 XXXXXXXXXGLHDLRSRLGIIPQDPNL---FEG-------TIRCNLD-PLEEHSDREIWE 1205
G D+ + P+D N+ F+ T+ N+ PL+ +
Sbjct: 71 F--------GDRDVTY---LPPKDRNISMVFQSYAVWPHMTVYENIAFPLK-------IK 112
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLEN--GDNWSVGQRQLVSLGRALLKQARILVLDEATAS 1263
K ++ VR + L+ L N S GQRQ V++ RA++ + +L++DE ++
Sbjct: 113 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 172
Query: 1264 VDTATDNLIQ---KIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPGRLLE 1320
+D ++ K ++ + K T+ ++ + D + V++ G++ + +P +
Sbjct: 173 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
Query: 1321 DKSSMFL 1327
+S+F+
Sbjct: 233 RPNSVFV 239
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 30/244 (12%)
Query: 447 MTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
M + + A Y + ++ +S+ + G VA+ G G+GKS+LL + G +
Sbjct: 4 MAVTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63
Query: 507 ISGEVRLCG-------------TAAYVSQSAWIQ-SGNIEENILFG-SPMDKAKYKKVIH 551
GE L G T A + Q + + ++ E I G +P ++ ++ +
Sbjct: 64 SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ 123
Query: 552 ACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQ------DADIYLLDDPFS 605
+ D + D + LSGG++QRVQLAR L Q LD+P S
Sbjct: 124 QVMAQTDCLALAQRDYRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTS 176
Query: 606 AVDA-HTGSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAGKYDDLL 663
A+D H L +T V V H + AD I++L +G+++ G +++L
Sbjct: 177 ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
Query: 664 QAGT 667
A T
Sbjct: 237 NAET 240
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 24/225 (10%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRS 1172
+++ ++ G+ + I+G G+GKSTL++ L + P+ G L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1173 RLGIIPQDPNL-----FEGTIRCNLDPLEEHSDREIWEALDKSQLGDIVRGKDQKLETPV 1227
++ Q L I+ P DR+ + + + +D ++
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1228 LENGDNWSVGQRQLVSLGRALLK------QARILVLDEATASVDTATDNLIQKIIR--TE 1279
S G++Q V L R L + R L LDE T+++D +++R T
Sbjct: 142 ------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195
Query: 1280 FKDCTVCTIAHRIP-TVIDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
+ VC + H + + +D +++L+ G++ TP +L ++
Sbjct: 196 QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL---------------C 514
L G+S+ V++G + G GSGKS+L++ I G + G V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 515 GTAAYVSQSAWIQSGNIEENILFG------SPMDKAKYKKVI--HACSLKKDLELFSHGD 566
G ++ + EN+L G SP++ YKK I ++K ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 567 QTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
+ + DR LSGGQ + V++ RAL + + ++D+P + V ++F +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 626 NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGK 658
T + + H+++ L D + V+ G+II G+
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSR 1173
L G++ + G I+G GSGKSTLI + ++ GR +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 1174 LGII-----PQD-------PNLFEGTIRCNLDPL-----------EEHSDREIWEALDKS 1210
GI+ PQ NL G I PL EE + ++ L+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TD 1269
+L + K +L S GQ +LV +GRAL+ +++V+DE A V
Sbjct: 142 KLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1270 NLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRV 1309
++ ++ + K T I HR+ V++ D + V+ +G++
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-ISGEVRLCGTA----------- 517
L +++ + G V++ G GSGKS++L+ I+G + K GEV +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 518 ------AYVSQS-----AWIQSGNIEENILF---GSPMDKAKYKKVIHACSLKKDLELFS 563
+V Q N+E ++F G+ + + K+ + + + E F+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA 139
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
+ LSGGQ+QRV +ARAL + I L D P A+D+ TG E IM
Sbjct: 140 NHKPN-------QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG-----EKIMQL 187
Query: 624 LAN------KTVIFVTHQVEFLPAADFILVLKEGRIIQAGK---YDD 661
L KTV+ VTH + + I+ LK+G + + K +DD
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 29/223 (13%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXX 1164
+ GE + L + G+ + I+G +GSGKST++ + L +P G
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 1165 XGLHDL----RSRLGIIPQDPNLFE-GTIRCNLD-PL----------EEHSDREIWEALD 1208
+L R ++G + Q NL T N++ PL EE R + E L
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL-ECLK 130
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
++L + R + K + S GQ+Q V++ RAL I++ D+ T ++D+ T
Sbjct: 131 MAELEE--RFANHK--------PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1269 DNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
I ++++ E TV + H I + ++ L DG V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL---------------C 514
L G+S+ V++G + G GSGKS+L++ I G + G V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 515 GTAAYVSQSAWIQSGNIEENILFG------SPMDKAKYKKVI--HACSLKKDLELFSHGD 566
G ++ + EN+L G SP++ YKK I ++K ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 567 QTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
+ + DR LSGGQ + V++ RAL + + ++D P + V ++F +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 626 NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGK 658
T + + H+++ L D + V+ G+II G+
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSR 1173
L G++ + G I+G GSGKSTLI + ++ GR +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 1174 LGII-----PQD-------PNLFEGTIRCNLDPL-----------EEHSDREIWEALDKS 1210
GI+ PQ NL G I PL EE + ++ L+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TD 1269
+L + K +L S GQ +LV +GRAL+ +++V+D+ A V
Sbjct: 142 KLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 1270 NLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRV 1309
++ ++ + K T I HR+ V++ D + V+ +G++
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 27/244 (11%)
Query: 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
++PRG ++ IQ++ + L IS ++ +G + + G+ G+GK++LL+ +
Sbjct: 13 LVPRG-SHXLIQLDQ---IGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68
Query: 502 GEIPKISGEVRLCG--------TAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHAC 553
P SG V L G +A V Q S ++ E G + +
Sbjct: 69 AYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128
Query: 554 SLKKDL--ELFSHGDQ--TIIGDRGIN------LSGGQKQRVQLARALYQDADIYLLDDP 603
+ +D+ E+ + Q ++G LS G+KQRV +ARAL + +LD+P
Sbjct: 129 GVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEP 188
Query: 604 FSAVD--AHTGSELFKEYIMTALANKTVIFVTHQVEFLPAADF--ILVLKEGRIIQAGKY 659
+ +D A + + + I+VTH +E + A+F IL+LK+G+ IQ G
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEI-TANFSKILLLKDGQSIQQGAV 247
Query: 660 DDLL 663
+D+L
Sbjct: 248 EDIL 251
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVD 1265
S G++Q V + RAL Q ++L+LDE A +D
Sbjct: 163 STGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 48/227 (21%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK-ISGEVRLCGTA----------- 517
L +++ + G V++ G GSGKS++L+ I+G + K GEV +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 518 ------AYVSQSAWI-----QSGNIEENILF---GSPMDKAKYKKVIHACSLKKDLELFS 563
+V Q + N+E ++F G+ + + K+ + + + E F+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA 139
Query: 564 HGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTA 623
+ LSGGQ+QRV +ARAL + I L D P A+D+ TG E IM
Sbjct: 140 NHKPN-------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG-----EKIMQL 187
Query: 624 LAN------KTVIFVTHQVEFLPAADFILVLKEGRIIQAGK---YDD 661
L KTV+ VTH + + I+ LK+G + + K +DD
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 31/224 (13%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXX 1164
+ GE + L + G+ + I+G +GSGKST++ + L +P G
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 1165 XGLHDL----RSRLGIIPQDPNLFEGTIRCNLDPLE-------------EHSDREIWEAL 1207
+L R ++G + Q NL + L+ +E E + E L
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECL 129
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
++L + R + K + S GQ+Q V++ RAL I++ D+ T ++D+
Sbjct: 130 KMAELEE--RFANHK--------PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 1268 TDNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
T I ++++ E TV + H I + ++ L DG V
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGS---ELFKEYIMTALANKTVIFVT 633
LSGGQ+QRV +ARAL + I L D+P A+D+ TG +L K+ + KTV+ VT
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK--LNEEDGKTVVVVT 203
Query: 634 HQVEFLPAADFILVLKEGRIIQAGK---YDD 661
H + + I+ LK+G + + K +DD
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEKLRGFDD 234
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 1105 RYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXX 1164
+ GE + L + G+ + I G +GSGKST + + L +P G
Sbjct: 12 KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 1165 XGLHDL----RSRLGIIPQDPNLFE-GTIRCNLD-PL----------EEHSDREIWEALD 1208
+L R ++G + Q NL T N++ PL EE R + E L
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRAL-ECLK 130
Query: 1209 KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTAT 1268
++L + R + K + S GQ+Q V++ RAL I++ DE T ++D+ T
Sbjct: 131 XAELEE--RFANHK--------PNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKT 180
Query: 1269 DNLIQKIIR--TEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
I ++++ E TV + H I + ++ L DG V
Sbjct: 181 GEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRL---------------C 514
L G+S+ V +G + G GSGKS+L++ I G + G V
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 515 GTAAYVSQSAWIQSGNIEENILFG------SPMDKAKYKKVI--HACSLKKDLELFSHGD 566
G ++ + EN+L G SP++ YKK I ++K ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 567 QTIIGDRGI-NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
+ + DR LSGGQ + V++ RAL + + ++D+P + V ++F +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 626 NKTVIFVTHQVEF-LPAADFILVLKEGRIIQAGK 658
T + + H+++ L D + V+ G+II G+
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSR 1173
L G++ + G I+G GSGKSTLI + ++ GR +L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 1174 LGII-----PQD-------PNLFEGTIRCNLDPL-----------EEHSDREIWEALDKS 1210
GI+ PQ NL G I PL EE + ++ L+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1211 QLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TD 1269
+L + K +L S GQ +LV +GRAL+ +++V+DE A V
Sbjct: 142 KLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1270 NLIQKIIRTEFKDCTVCTIAHRIPTVIDS-DLVLVLSDGRV 1309
++ ++ + K T I HR+ V++ D + V+ +G++
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFV 632
LSGGQ+QRV L RA+ + ++L+D+P S +DA + E + L + T I+V
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE--LKKLQRQLGVTTIYV 196
Query: 633 TH-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
TH QVE + D I V+ G + Q G D++
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKD------CTVCTI 1288
S GQRQ V+LGRA++++ ++ ++DE +++D ++ +R E K T +
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK----LRVRMRAELKKLQRQLGVTTIYV 196
Query: 1289 AH-RIPTVIDSDLVLVLSDGRVAEFDTPGRLLEDKSSMFL 1327
H ++ + D + V++ G + + +P + + ++ F+
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 34/209 (16%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEI-PKISGEVRLCGTA----------- 517
L GIS+ V +G V++ G GSGKS+LL ILG + G+V L G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 518 ------AYVSQSAW-IQSGNIEENIL-----FGSPMDKAKYKKVIHACSLKKDLELFSHG 565
+V Q + I EN++ G P +AK + L +L L G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER----GEYLLSELGL---G 131
Query: 566 DQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALA 625
D+ + + LSGG++QRV +ARAL + + D+P +D+ + ++
Sbjct: 132 DK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 626 NKTVIFVTHQVEFLPAADFILVLKEGRII 654
+++ VTH+ E L +K+G+++
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 1113 VLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXG---LHD 1169
+L GI+ + G+ + I+G +GSGKSTL+ L L P G+ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1170 LRSR-LGIIPQ----DPNL--FEGTIRCNL---DPLEEHSDREIWEALDKSQLGDIVRGK 1219
LR+R LG + Q P L E I L P +E +R + L + LGD + K
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY-LLSELGLGDKLSRK 137
Query: 1220 DQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA-TDNLIQKIIRT 1278
+L S G++Q V++ RAL + +L DE T ++D+A T ++ ++
Sbjct: 138 PYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 1279 EFKDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1309
++ + H + L + DG+V
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKV 217
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 28/263 (10%)
Query: 410 PDLVSMMAQTKVSLDRISGFLQEEELQEDATIVLPRGM----TNVAIQIENAEFCWYPSS 465
P + + +Q K + + I+ FL+ L+++ P + T ++IE YP
Sbjct: 235 PGVYGIFSQPKGTRNGINEFLRGY-LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 466 SRP----TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVS 521
+ L ++ +G + + G G GK++ + + G G++ T AY
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP 353
Query: 522 QSAWIQS---GNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGIN-L 577
Q +I++ G + E + S +D +K + L K L + + DR +N L
Sbjct: 354 Q--YIKADYEGTVYELL---SKIDASKLNSNFYKTELLKPLGIID------LYDREVNEL 402
Query: 578 SGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN-KTVIFVTHQV 636
SGG+ QRV +A L +DADIYLLD+P + +D + + N KT + V H V
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Query: 637 EFLPAADFILVLKEGRIIQAGKY 659
+ L + EG + GKY
Sbjct: 463 LXIDYVSDRLXVFEG---EPGKY 482
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGE-IPKISGEVRLCGTAAYVSQSAWIQSGNIEENI 535
V G V + G G+GKS+ + + G+ IP + G+ + +Q N E +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ--NYFEKL 101
Query: 536 LFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQT-------------IIGDRGI-NLSG 579
G P+ K +Y +I K +EL D+T + +R I +LSG
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSG 161
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFL 639
G+ QRV +A AL ++A Y D+P S +D + + K+V+ V H + L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 38/220 (17%)
Query: 1105 RYGEN------LPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALF-RLIEPACGRXXX 1157
RYG N LP+V G +GIVG G+GKST ++ L +LI CG
Sbjct: 30 RYGVNAFVLYRLPVVKEGXV--------VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1158 XXXXXXXXGLHDLRS----------RLGIIPQDPNLFEGTIRCNLDPLEEHSDREIWEAL 1207
++L++ R + PQ +L ++ + L + +D
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------- 134
Query: 1208 DKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTA 1267
+ +L ++V K +LE + + S G+ Q V++ ALL+ A DE ++ +D
Sbjct: 135 ETGKLEEVV--KALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 1268 TD-NLIQKIIRTEFKDCTVCTIAHRIPTVID--SDLVLVL 1304
N + I R + +V + H + V+D SD++ V+
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVV 231
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ-SGNIEEN 534
++ +G + + G G GK++ + + G G+V T AY Q + G + E
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 437
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
+ S +D +K + L K L + D+ + +LSGG+ QRV +A L +D
Sbjct: 438 L---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRD 489
Query: 595 ADIYLLDDPFSAVDAHTGSELFK--EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652
ADIYLLD+P + +D + + ++M KT + V H V + L++ EG
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEGE 548
Query: 653 IIQAGK 658
+ G+
Sbjct: 549 PGRHGR 554
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGE-IPKISGEVRLCGTAAYVSQSAWIQSGNIEENI 535
V GM V + G G+GK++ + + G+ IP + + + +Q N E +
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ--NYFERL 171
Query: 536 LFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQT-------------IIGDRGIN-LSG 579
G P+ K +Y ++ K EL D+ + DR ++ LSG
Sbjct: 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 231
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTHQVE 637
G+ QRV +A AL + A Y D+P S +D ++ + ++ LAN K V+ V H +
Sbjct: 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVLVVEHDLA 289
Query: 638 FL 639
L
Sbjct: 290 VL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 476 KVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWIQ-SGNIEEN 534
++ +G + + G G GK++ + + G G+V T AY Q + G + E
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 423
Query: 535 ILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQD 594
+ S +D +K + L K L + D+ + +LSGG+ QRV +A L +D
Sbjct: 424 L---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRD 475
Query: 595 ADIYLLDDPFSAVDAHTGSELFK--EYIMTALANKTVIFVTHQVEFLPAADFILVLKEGR 652
ADIYLLD+P + +D + + ++M KT + V H V + L++ EG
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEGE 534
Query: 653 IIQAGK 658
+ G+
Sbjct: 535 PGRHGR 540
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 477 VDRGMRVAVCGMVGSGKSSLLSCILGE-IPKISGEVRLCGTAAYVSQSAWIQSGNIEENI 535
V GM V + G G+GK++ + + G+ IP + + + +Q N E +
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ--NYFERL 157
Query: 536 LFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQT-------------IIGDRGIN-LSG 579
G P+ K +Y ++ K EL D+ + DR ++ LSG
Sbjct: 158 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 217
Query: 580 GQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALAN--KTVIFVTHQVE 637
G+ QRV +A AL + A Y D+P S +D ++ + ++ LAN K V+ V H +
Sbjct: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVLVVEHDLA 275
Query: 638 FL 639
L
Sbjct: 276 VL 277
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 26/249 (10%)
Query: 1095 GTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGR 1154
G + + DL+ R G+ +L GI+ G+ G++G G+GK+T ++ + LI+P+ G
Sbjct: 14 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG- 70
Query: 1155 XXXXXXXXXXXGLHDLRSRLGIIPQDPNLFEGTIRCNLDPLE---------EHSDREIWE 1205
H++R + +P++ + N+ +E S EI E
Sbjct: 71 IVTVFGKNVVEEPHEVRKLISYLPEEAGAYR-----NMQGIEYLRFVAGFYASSSSEIEE 125
Query: 1206 ALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVD 1265
++++ + G +K++ V +S G + + + RAL+ R+ +LDE T+ +D
Sbjct: 126 MVERATE---IAGLGEKIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 1266 TATDNLIQKIIRTEFKD-CTVCTIAHRIPTV-IDSDLVLVLSDGRVAEFDTPGRLLEDKS 1323
++KI++ ++ T+ +H + V D + ++ +G + E T L E
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
Query: 1324 SMFLKLVTE 1332
+ ++ V E
Sbjct: 239 AQNIEEVFE 247
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
+ L GIS +++ G + G G+GK++ L I I SG V + G +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-------V 80
Query: 527 QSGNIEENILFGSPMDKAKYKKV-----------IHACSLKKDLELFSHGDQTI-----I 570
+ + ++ P + Y+ + +A S + E+ + I
Sbjct: 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 140
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVI 630
DR S G +++ +ARAL + + +LD+P S +D E+ K + T++
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 631 FVTH---QVEFLPAADFILVLKEGRIIQAGKYDDL 662
+H +VEFL D I ++ G I++ G ++L
Sbjct: 201 VSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANK---TVIFVT 633
LSGGQ+QRV L RA+ + ++L D+P S +DA + E + L + T I+VT
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE--LKKLQRQLGVTTIYVT 200
Query: 634 H-QVEFLPAADFILVLKEGRIIQAGKYDDL 662
H QVE D I V +G + Q G D++
Sbjct: 201 HDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 37.7 bits (86), Expect = 0.047, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 46/243 (18%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
++LI++ R+G+ + ++ G+ + ++G +G GK+T ++ + L EP G+
Sbjct: 7 VKLINIWKRFGD--VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIY 64
Query: 1157 XXXXXXXXXGLHDLRSRLGIIPQDPNL---FEG-------TIRCNLD-PLE------EHS 1199
+ D + + P++ ++ F+ T+ N+ PL+ +
Sbjct: 65 IEDNL-----VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEI 119
Query: 1200 DREIWEALDKSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDE 1259
D+ + E + L +++ K ++L S GQRQ V+LGRA++++ ++ + DE
Sbjct: 120 DKRVREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDE 168
Query: 1260 ATASVDTATDNLIQKIIRTEFKD------CTVCTIAH-RIPTVIDSDLVLVLSDGRVAEF 1312
+++D ++ R E K T + H ++ D + V + G + +
Sbjct: 169 PLSNLDAK----LRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQV 224
Query: 1313 DTP 1315
TP
Sbjct: 225 GTP 227
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 30/215 (13%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCG-----TAAYVSQS- 523
+ GI +KV RG V + G G+GK++ LS I G + G++ G A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 524 --AWIQSG-------NIEENILFGSPMDKAKYKKVIHACSLKKDLE----LFSHGDQTII 570
A + G + EN+ G+ K K +K+DLE LF + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKE-------GIKRDLEWIFSLFPRLKER-L 133
Query: 571 GDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVI 630
G LSGG++Q + + RAL + D+P + SE+F E I T I
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTI 192
Query: 631 FVTHQVEF--LPAADFILVLKEGRIIQAGKYDDLL 663
+ Q L A + VL+ G+I+ GK +LL
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
+E+ L V YG + GI P G+ + ++G G+GK+T + A+ L+ G+
Sbjct: 7 LEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1157 XXXXXXXXXGLHDL-RSRLGIIPQDPNLF-EGTIRCNLDPLEEHSDREIWEALDKSQLGD 1214
H + R + ++P+ +F E T+ NL +R+ E + + +
Sbjct: 65 FNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENL--XXGAYNRKDKEGIKRDL--E 120
Query: 1215 IVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEAT 1261
+ +L+ + + G S G++Q +++GRAL + ++L DE +
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV--------RLCGTAA 518
+P L I+M +++G V G G GK++LL I + + GE+ ++ G
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 519 YVSQSAWI-QSGNIEENI-----LFGSPMDKAKYKKVIHACS---LKKDLELFSHGDQTI 569
++ + + + ++E+ + L+G ++K + + + LKK L
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG--------- 132
Query: 570 IGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTV 629
LS G +RVQLA L +A+IY+LDDP A+D + ++ K I+ L K +
Sbjct: 133 ------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGI 185
Query: 630 IFVTHQVEF 638
+ ++ + E
Sbjct: 186 VIISSREEL 194
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 52/214 (24%)
Query: 1097 IELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFRLIEPACGRXX 1156
+E+ DL V Y + VL IT G + G G GK+TL++ + ++P G
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1157 XXXXXXXXXGLHDLRSRLGIIPQD----------------PNLFEGTIRCN--LDPLEEH 1198
+ ++ ++ +P++ +L+ + N +D LE
Sbjct: 68 YNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES- 121
Query: 1199 SDREIWEALD-KSQLGDIVRGKDQKLETPVLENGDNWSVGQRQLVSLGRALLKQARILVL 1257
E LD K +LG++ +G ++ V L LL A I VL
Sbjct: 122 -----VEVLDLKKKLGELSQGTIRR-------------------VQLASTLLVNAEIYVL 157
Query: 1258 DEATASVDTATDNLIQKIIRTEFKDCTVCTIAHR 1291
D+ ++D + + + K I K+ + I+ R
Sbjct: 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+++ N EF YP +S+P ++ I+ + R+AV G G+GKS+L++ + GE+ SGEV
Sbjct: 666 VKVTNXEF-QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Query: 512 RLCGTA--AYVSQSAW 525
AY+ Q A+
Sbjct: 725 YTHENCRIAYIKQHAF 740
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-GEIPKISGEVRLCGTAAYVSQSAWIQS 528
L+ +++ R R +CG G GKS+L I G++ + C T S
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEE-CRTVYVEHDIDGTHS 503
Query: 529 GNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ +F S + + ++K L F D+ I LSGG K ++ LA
Sbjct: 504 DTSVLDFVFESGVGTKE--------AIKDKLIEFGFTDEXIAXPISA-LSGGWKXKLALA 554
Query: 589 RALYQDADIYLLDDPFSAVD 608
RA+ ++ADI LLD+P + +D
Sbjct: 555 RAVLRNADILLLDEPTNHLD 574
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 551 HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
H L D E+ SH R LSGGQK ++ LA +Q + +LD+P + +D
Sbjct: 877 HCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD 929
Query: 611 T---GSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
+ S+ KE+ VI +TH EF + + +K+GR +G
Sbjct: 930 SLGALSKALKEF------EGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 40/152 (26%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNL 1183
++ GI G G GKSTL +A+ A G+ R + D
Sbjct: 455 ARRYGICGPNGCGKSTLXRAI------ANGQVDGFPTQE--------ECRTVYVEHD--- 497
Query: 1184 FEGTIRCNLDPLEEHSDREIWEALDKSQLG--DIVRGK-------DQKLETPVLENGDNW 1234
+GT HSD + + + +S +G + ++ K D+ + P+ W
Sbjct: 498 IDGT----------HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGW 547
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ ++L RA+L+ A IL+LDE T +DT
Sbjct: 548 ----KXKLALARAVLRNADILLLDEPTNHLDT 575
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+++ N EF YP +S+P ++ I+ + R+AV G G+GKS+L++ + GE+ SGEV
Sbjct: 672 VKVTNXEF-QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 512 RLCGTA--AYVSQSAW 525
AY+ Q A+
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-GEIPKISGEVRLCGTAAYVSQSAWIQS 528
L+ +++ R R +CG G GKS+L I G++ + C T S
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEE-CRTVYVEHDIDGTHS 509
Query: 529 GNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ +F S + + ++K L F D+ I LSGG K ++ LA
Sbjct: 510 DTSVLDFVFESGVGTKE--------AIKDKLIEFGFTDEXIAXPISA-LSGGWKXKLALA 560
Query: 589 RALYQDADIYLLDDPFSAVD 608
RA+ ++ADI LLD+P + +D
Sbjct: 561 RAVLRNADILLLDEPTNHLD 580
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 551 HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAH 610
H L D E+ SH R LSGGQK ++ LA +Q + +LD+P + +D
Sbjct: 883 HCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD 935
Query: 611 T---GSELFKEYIMTALANKTVIFVTHQVEFLPA-ADFILVLKEGRIIQAG 657
+ S+ KE+ VI +TH EF + + +K+GR +G
Sbjct: 936 SLGALSKALKEF------EGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 40/152 (26%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNL 1183
++ GI G G GKSTL +A+ A G+ R + D
Sbjct: 461 ARRYGICGPNGCGKSTLXRAI------ANGQVDGFPTQE--------ECRTVYVEHD--- 503
Query: 1184 FEGTIRCNLDPLEEHSDREIWEALDKSQLG--DIVRGK-------DQKLETPVLENGDNW 1234
+GT HSD + + + +S +G + ++ K D+ + P+ W
Sbjct: 504 IDGT----------HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGW 553
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ ++L RA+L+ A IL+LDE T +DT
Sbjct: 554 ----KXKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 467 RPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTAAYVSQSAWI 526
R +L I+++V+ G +V + G GSGK++LL I G +P SG + + G ++
Sbjct: 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIR 75
Query: 527 QSGNIEENILFGSPMDKAKYKKVIHACSLKKDLEL-----FSHGDQTIIGDRGINLSGGQ 581
S N+ E G ++ Y L +DL L G++ I+ + LS GQ
Sbjct: 76 YSTNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLFLEMLKALKLGEE-ILRRKLYKLSAGQ 133
Query: 582 KQRVQLARALYQDADIYLLDDPFSAVDA---HTGSELFKEYIMTALANKTVIFVTHQVEF 638
V+ + AL +I LD+PF VDA H S KEY K I VTH+++
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILVTHELDM 187
Query: 639 L 639
L
Sbjct: 188 L 188
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNL 1183
G+K+ I+G GSGK+TL++A+ L+ P G + +R+ + P
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGME-----VRKIRNYIRYSTNLPEA 83
Query: 1184 FEGTIRCN--LDPLEEHS--DREIW-EALDKSQLGD-IVRGKDQKLETPVLENGDNWSVG 1237
+E + N + EE DR+++ E L +LG+ I+R K KL S G
Sbjct: 84 YEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL-----------SAG 132
Query: 1238 QRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKDCTVCT 1287
Q LV AL Q I+ LDE +VD A ++I + I+ K+ + T
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 452 IQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEV 511
+++ N EF YP +S+P ++ I+ + R+AV G G+GKS+L++ + GE+ SGEV
Sbjct: 672 VKVTNMEF-QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 512 RLCGTA--AYVSQSAW 525
AY+ Q A+
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL-GEIPKISGEVRLCGTAAYVSQSAWIQS 528
L+ +++ R R +CG G GKS+L+ I G++ + C T S
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEE-CRTVYVEHDIDGTHS 509
Query: 529 GNIEENILFGSPMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLA 588
+ +F S + + ++K L F D+ I LSGG K ++ LA
Sbjct: 510 DTSVLDFVFESGVGTKE--------AIKDKLIEFGFTDEMIAMPISA-LSGGWKMKLALA 560
Query: 589 RALYQDADIYLLDDPFSAVD 608
RA+ ++ADI LLD+P + +D
Sbjct: 561 RAVLRNADILLLDEPTNHLD 580
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 521 SQSAWIQSGNIEENILFGS--PMDKAKYKKVIHACSLKKDLELFSHGDQTIIGDRGINLS 578
S S + +++E + G P+ + + ++ H L D E+ SH R LS
Sbjct: 853 SHSKMVAEVDMKEALASGQFRPLTRKEIEE--HCSMLGLDPEIVSHS-------RIRGLS 903
Query: 579 GGQKQRVQLARALYQDADIYLLDDPFSAVDAHT---GSELFKEYIMTALANKTVIFVTHQ 635
GGQK ++ LA +Q + +LD+P + +D + S+ KE+ VI +TH
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHS 957
Query: 636 VEFLPA-ADFILVLKEGRIIQAG 657
EF + + +K+GR+ +G
Sbjct: 958 AEFTKNLTEEVWAVKDGRMTPSG 980
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 40/152 (26%)
Query: 1124 GKKIGIVGRTGSGKSTLIQALFRLIEPACGRXXXXXXXXXXXGLHDLRSRLGIIPQDPNL 1183
++ GI G G GKSTL++A+ A G+ R + D
Sbjct: 461 ARRYGICGPNGCGKSTLMRAI------ANGQVDGFPTQE--------ECRTVYVEHD--- 503
Query: 1184 FEGTIRCNLDPLEEHSDREIWEALDKSQLG--DIVRGK-------DQKLETPVLENGDNW 1234
+GT HSD + + + +S +G + ++ K D+ + P+ W
Sbjct: 504 IDGT----------HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGW 553
Query: 1235 SVGQRQLVSLGRALLKQARILVLDEATASVDT 1266
+ ++L RA+L+ A IL+LDE T +DT
Sbjct: 554 ----KMKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 472 GISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK----ISGEVRLCGT----------- 516
GIS+ + A+ G SGKS+++ + +P +SG V G
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 517 ------AAYVSQSAWIQSGNIEENIL--FGSPMD----KAKYKKVIHACSLKKDLELFSH 564
A V Q+A QS N ++ F ++ + + ++I S K L +
Sbjct: 86 KIRWKEIALVPQAAQ-QSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK--LRMVRL 142
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTAL 624
+ ++ + LSGG KQRV +A AL D + +LD+P SA+D T + + +
Sbjct: 143 NPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 625 ANK-TVIFVTHQVEFLPA-ADFILVLKEGRIIQ 655
K T+IFVTH + AD + V+ G +++
Sbjct: 203 MLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 1128 GIVGRTGSGKSTLIQALFRLIEPA----CGRXXXXXXXXXXXGLHDLRS----RLGIIPQ 1179
IVG + SGKST+I+A+ + + P GR +LR + ++PQ
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 1180 ------DPNLFEGTIRCNLDPLEEHSDREIW---EALDKS--QLGDIVRGKDQKLETPVL 1228
+P + I D +E H R W E ++K+ +L + + L + L
Sbjct: 98 AAQQSLNPTM--KVIEHFKDTVEAHGVR--WSHSELIEKASEKLRMVRLNPEAVLNSYPL 153
Query: 1229 ENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATD-NLIQ-KIIRTEFKDCTVC 1286
+ S G +Q V + ALL +L+LDE T+++D T ++IQ + T+
Sbjct: 154 Q----LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLI 209
Query: 1287 TIAHRIPTVID-SDLVLVLSDGRVAEFDT 1314
+ H I + +D V V+ G + E+++
Sbjct: 210 FVTHDIAVAAELADKVAVIYGGNLVEYNS 238
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQDA---DIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QR++LA L + +Y+LD+P + + L ++ + A
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 627 KTVIFVTHQVEFLPAADFILVLKE------GRIIQAGKYDDLLQAGTDFNA 671
TVI V H+++ + A+D++L + GR++ G ++ QA A
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 576 NLSGGQKQRVQLARALYQD--ADIYLLDDPFSAVDAHTGSELFKEYIMTALAN-----KT 628
LS G+ QR++LA LY + +Y+LD+P + + H E +++AL N +
Sbjct: 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGL--HPAD---TEALLSALENLKRGGNS 433
Query: 629 VIFVTHQVEFLPAADFILVL------KEGRIIQAGKYDDL 662
+ V H ++ + AD+++ + K G I+ +G + L
Sbjct: 434 LFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 576 NLSGGQKQRVQLARALYQD--ADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
LSGG+ QR++LA + +Y+LD+P + L + T+I V
Sbjct: 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 634 HQVEFLPAADFILVL------KEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPN 687
H + + AD+I+ + GRI+ +G YD+LL+ + +++ A+ E+++IP
Sbjct: 581 HDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR---NKDSITGAYLSGRESIEIPA 637
Query: 688 -HSSEDSDENLTLDGC 702
S D LT+ G
Sbjct: 638 IRRSVDPRRQLTVVGA 653
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQDA---DIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QRV+LA L + + +Y+LD+P + + +L ++ L +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN--VINGLVD 914
Query: 627 K--TVIFVTHQVEFLPAADFILVL 648
K TVI + H ++ + +D+I+ L
Sbjct: 915 KGNTVIVIEHNLDVIKTSDWIIDL 938
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1114 LHGITCAFPGGKKIGIVGRTGSGKSTLIQALF 1145
L GI +FP G + G +GSGKSTL+ +
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQDAD---IYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QRV+LA L++ ++ +Y+LD+P + + + L
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 627 KTVIFVTHQVEFLPAADFILVL------KEGRIIQAGKYDDLLQ 664
TV+ + H ++ + AD+I+ L + G+I+ G +++ +
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 576 NLSGGQKQRVQLARALYQ--DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVT 633
LSGG+ QR++LA + +Y+LD+P + L T+I V
Sbjct: 504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563
Query: 634 HQVEFLPAADFILVLKEGRIIQAGKYDDLLQAGT------DFNALVSAHHEAIEAMDIP 686
H + + AAD+++ + G I G +++ AGT D N+L + + + IP
Sbjct: 564 HDEDTMLAADYLIDIGPGAGIHGG---EVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIP 619
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
L +S+K+ G VAV G+ GSGKS+L++ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 539 SPMDKAKYKKVIHACS-LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADI 597
SP D +Y K++ + LK+D+E LSGG+ QR + + Q+AD+
Sbjct: 198 SPEDVKRYIKILQLENVLKRDIE---------------KLSGGELQRFAIGMSCVQEADV 242
Query: 598 YLLDDPFSAVDAHTGSELFKEYIMTAL--ANKTVIFVTHQVEFLP-AADFILVL 648
Y+ D+P S +D L I+ +L K VI V H + L +DF+ ++
Sbjct: 243 YMFDEPSSYLDVK--QRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 569 IIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHT---GSELFKEYIMTALA 625
II +LSGG+ QRV + AL ADIYL+D+P + +D+ S++ + +I L
Sbjct: 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI---LH 516
Query: 626 NKTVIFVTHQVEFLPA---ADFILVLK 649
NK F+ +F+ A AD ++V +
Sbjct: 517 NKKTAFIVEH-DFIMATYLADKVIVFE 542
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQDAD---IYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QRV+LA L++ ++ +Y+LD+P + + + L
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 627 KTVIFVTHQVEFLPAADFILVL------KEGRIIQAGKYDDLLQ 664
TV+ + H ++ + AD+I+ L + G+I+ G +++ +
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 577 LSGGQKQRVQLARALYQ--DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
LSGG+ QR++LA + +Y+LD+P + L T+I V H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGT------DFNALVSAHHEAIEAMDIP 686
+ AAD+++ + G I G +++ AGT D N+L + + + IP
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGG---EVVAAGTPEEVXNDPNSLTGQYLSGKKFIPIP 619
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
L +S+K+ G VAV G+ GSGKS+L++ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQDAD---IYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QRV+LA L++ ++ +Y+LD+P + + + L
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 627 KTVIFVTHQVEFLPAADFILVL------KEGRIIQAGKYDDLLQ 664
TV+ + H ++ + AD+I+ L + G+I+ G +++ +
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 577 LSGGQKQRVQLARALYQ--DADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
LSGG+ QR++LA + +Y+LD+P + L T+I V H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 635 QVEFLPAADFILVLKEGRIIQAGKYDDLLQAGT------DFNALVSAHHEAIEAMDIP 686
+ + AAD+++ + G I G +++ AGT D N+L + + + IP
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGG---EVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIP 317
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 469 TLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
L +S+K+ G VAV G+ GSGKS+L++ +L
Sbjct: 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 577 LSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQV 636
LSGG QR+ +A +L ++AD+Y+ D P S +D + K I L NK VI V H +
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA-IRELLKNKYVIVVDHDL 197
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 576 NLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIF-VTH 634
+LSGG+ Q++ +A L ++AD+Y+LD P S +D + K K V F + H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 635 QVEFLP-AADFILVLK 649
+ AD I+V K
Sbjct: 445 DLSIHDYIADRIIVFK 460
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 21/102 (20%)
Query: 569 IIGDRGIN-----LSGGQKQ--RVQLARALYQDA----DIYLLDDPFSAVDAHTGSELFK 617
II D GI LSGG++ + LA +L + A D + +D+ FS++D K
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTEN-----K 321
Query: 618 EYIMTALA-----NKTVIFVTHQVEFLPAADFILVLKEGRII 654
E I + L NK ++F+TH EF A D L + G ++
Sbjct: 322 EKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 21/102 (20%)
Query: 569 IIGDRGIN-----LSGGQKQ--RVQLARALYQDA----DIYLLDDPFSAVDAHTGSELFK 617
II D GI LSGG++ + LA +L + A D + +D+ FS++D K
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN-----K 321
Query: 618 EYIMTALA-----NKTVIFVTHQVEFLPAADFILVLKEGRII 654
E I + L NK ++F+TH EF A D L + G ++
Sbjct: 322 EKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 62/254 (24%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L +S +V G + + G G+GKS+LL+ + G + G ++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 518 -AYVSQSAWIQSGNIEENILFGSPM---------DKAKYK---KVIHACSLKKDLELFSH 564
AY+SQ ++ F +P+ DK + + V A +L L
Sbjct: 75 RAYLSQ---------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 565 GDQTIIGDRGINLSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELFK 617
G LSGG+ QRV+LA + Q + LLD P +++D S L K
Sbjct: 121 ------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDK 174
Query: 618 EYIMTALANK--TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVS 674
I++AL+ + ++ +H + L A +LK G+++ +G+ +++L T N L
Sbjct: 175 --ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL---TPPN-LAQ 228
Query: 675 AHHEAIEAMDIPNH 688
A+ +DI H
Sbjct: 229 AYGMNFRRLDIEGH 242
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 577 LSGGQKQRVQLARALYQDAD--IYLLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTH 634
LSGG+ QR++LA + IY+LD+P + L K TVI V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 635 QVEFLPAADFILVL------KEGRIIQAGKYDDLLQ 664
E + AD I+ + GR++ G D+LL+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 570 IGDRGINLSGGQKQRVQLARALYQ---DADIYLLDDPFSAVDAHTGSELFKEYIMTALAN 626
+G LSGG+ QR++LA L + +Y+LD+P + +L +
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 627 KTVIFVTHQVEFLPAADFILVL-----KEGRIIQA 656
TVI + H ++ + AD I+ L KEG I A
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA 893
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 58/252 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L +S +V G + + G G+GKS+LL+ + G + G ++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 518 -AYVSQSAWIQSGNIEENILFGSPM---------DKAKYKKVIH-ACSLKKDLELFSHGD 566
AY+SQ ++ F +P+ DK + + + A +L D +L +
Sbjct: 75 RAYLSQ---------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELFKEY 619
Q LSGG+ QRV+LA + Q + LLD P ++D S L K
Sbjct: 126 Q---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDK-- 174
Query: 620 IMTALANK--TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAH 676
I++AL+ + ++ +H + L A +LK G+++ +G+ +++L T N L A+
Sbjct: 175 ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL---TPPN-LAQAY 230
Query: 677 HEAIEAMDIPNH 688
+DI H
Sbjct: 231 GMNFRRLDIEGH 242
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 58/252 (23%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKISGEVRLCGTA------------ 517
L +S +V G + + G G+GKS+LL+ G G ++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 518 -AYVSQSAWIQSGNIEENILFGSPM---------DKAKYKKVIH-ACSLKKDLELFSHGD 566
AY+SQ ++ F +P+ DK + + + A +L D +L +
Sbjct: 75 RAYLSQ---------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 567 QTIIGDRGINLSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELFKEY 619
Q LSGG+ QRV+LA + Q + LLD+P +++D S L K
Sbjct: 126 Q---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK-- 174
Query: 620 IMTALANK--TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAH 676
I++AL+ + ++ +H + L A +LK G+ + +G+ +++L T N L A+
Sbjct: 175 ILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL---TPPN-LAQAY 230
Query: 677 HEAIEAMDIPNH 688
+DI H
Sbjct: 231 GXNFRRLDIEGH 242
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.0 bits (84), Expect = 0.083, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 577 LSGGQKQRVQLARALYQ-------DADIYLLDDPFSAVDAHTGSELFKEYIMTALANK-- 627
LSGG+ QRV+LA + Q + LLD+P +++D S L K I++AL +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK--ILSALCQQGL 184
Query: 628 TVIFVTHQVEF-LPAADFILVLKEGRIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIP 686
++ +H + L A +LK G+ + +G+ +++L L A+ +DI
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN----LAQAYGXNFRRLDIE 240
Query: 687 NH 688
H
Sbjct: 241 GH 242
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/219 (18%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 466 SRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILG----------------EIPKISG 509
+ L G+S+ V G A+ G GSGKS+L + + G ++ +S
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 510 EVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKKVIHACS-------LKKDLELF 562
E R G +++ ++ + + ++ + + +++ + L
Sbjct: 73 EDR-AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 131
Query: 563 SHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYIMT 622
+ + + SGG+K+R + + + ++ +LD+ S +D +
Sbjct: 132 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 191
Query: 623 ALANKTVIFVTHQVEFLP--AADFILVLKEGRIIQAGKY 659
++ I VTH L D++ VL +GRI+++G +
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/243 (18%), Positives = 98/243 (40%), Gaps = 31/243 (12%)
Query: 442 VLPRGMTNVAIQIENAEFCWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCIL 501
++PRG ++I+ + + L G+S+ V G A+ G GSGKS+L + +
Sbjct: 13 LVPRGSHMLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLA 67
Query: 502 G----------------EIPKISGEVRLCGTAAYVSQSAWIQSGNIEENILFGSPMDKAK 545
G ++ +S E R G +++ ++ + + ++ +
Sbjct: 68 GREDYEVTGGTVEFKGKDLLALSPEDR-AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126
Query: 546 YKKVIHACS-------LKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIY 598
+ +++ + L + + + SGG+K+R + + + ++
Sbjct: 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELC 186
Query: 599 LLDDPFSAVDAHTGSELFKEYIMTALANKTVIFVTHQVEFLP--AADFILVLKEGRIIQA 656
+LD+ S +D + ++ I VTH L D++ VL +GRI+++
Sbjct: 187 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246
Query: 657 GKY 659
G +
Sbjct: 247 GDF 249
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 1087 PPSSWPENGTIELIDLKVRYGENLPLVLHGITCAFPGGKKIGIVGRTGSGKSTLIQALFR 1146
P S + E G L+D N + I GK + + G TGSGK+T I+++
Sbjct: 141 PHSFFEEQGFYNLLD-------NKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME 193
Query: 1147 LI 1148
I
Sbjct: 194 FI 195
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 470 LSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPK 506
+S I + G V VCG GSGK++ + I+ IPK
Sbjct: 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 28/222 (12%)
Query: 460 CWYPSSSRPTLSGISMKVDRGMRVAVCGMVGSGKSSLLSCILGEIPKIS---GEVRLCGT 516
W L G+++ V +G A+ G G+GKS+L + G+ P+ + GE+ L G
Sbjct: 9 LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGE 67
Query: 517 AAY-VSQSAWIQSGNIEENILFGSPMD--------------KAKYKKVIHACS----LKK 557
+S + G + F P++ +AK + + +KK
Sbjct: 68 NILELSPDERARKGLF---LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKK 124
Query: 558 DLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFK 617
LEL + + SGG+K+R ++ + L + +LD+ S +D + +
Sbjct: 125 ALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
Query: 618 EYIMTALANKTVIFVTHQVEFLP--AADFILVLKEGRIIQAG 657
N + +TH L D + V+ +GR++ G
Sbjct: 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 184
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1126 KIGIVGRTGSGKSTLIQALFRLIEPACG 1153
K+ IVG TGSGK+TL+Q L + + G
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLG 31
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 171
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1126 KIGIVGRTGSGKSTLIQALFRLIEPACG 1153
K+ IVG TGSGK+TL+Q L + + G
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLG 29
>pdb|2CBT|A Chain A, Crystal Structure Of The Neocarzinostatin 4tes1 Mutant
Bound Testosterone Hemisuccinate.
pdb|2CBT|B Chain B, Crystal Structure Of The Neocarzinostatin 4tes1 Mutant
Bound Testosterone Hemisuccinate
Length = 112
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 502 GEIPKISGEVRLCGTAAYVSQSAWIQSGNIEEN 534
G + K++G GTA +V+QSAW+ +G N
Sbjct: 16 GTVVKVAGAGLQAGTAYWVAQSAWVDTGVYASN 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,304,022
Number of Sequences: 62578
Number of extensions: 1439123
Number of successful extensions: 3767
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 336
length of query: 1343
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1232
effective length of database: 8,027,179
effective search space: 9889484528
effective search space used: 9889484528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)