Query 000703
Match_columns 1342
No_of_seqs 533 out of 2924
Neff 7.4
Searched_HMMs 46136
Date Mon Apr 1 22:09:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1912 WD40 repeat protein [G 100.0 6E-140 1E-144 1215.9 59.5 1031 8-1287 1-1062(1062)
2 KOG0318 WD40 repeat stress pro 100.0 5.7E-48 1.2E-52 436.8 65.4 567 29-882 23-602 (603)
3 KOG0319 WD40-repeat-containing 100.0 5E-47 1.1E-51 444.0 52.6 570 28-882 23-619 (775)
4 KOG0319 WD40-repeat-containing 100.0 4.2E-43 9.2E-48 411.1 45.0 526 26-828 64-617 (775)
5 KOG0271 Notchless-like WD40 re 100.0 3.7E-42 8E-47 376.4 26.2 337 251-828 113-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 2.3E-41 4.9E-46 370.3 30.5 365 293-880 111-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 1.3E-37 2.9E-42 364.3 62.1 535 27-885 17-615 (893)
8 KOG0306 WD40-repeat-containing 100.0 2.6E-38 5.7E-43 370.0 51.1 597 26-882 23-664 (888)
9 KOG0318 WD40 repeat stress pro 100.0 3.8E-36 8.3E-41 341.0 58.3 522 23-830 58-602 (603)
10 KOG0291 WD40-repeat-containing 100.0 2.6E-35 5.7E-40 345.1 56.3 520 101-887 26-555 (893)
11 KOG0306 WD40-repeat-containing 100.0 2.4E-36 5.3E-41 353.6 46.2 541 26-830 67-664 (888)
12 KOG1408 WD40 repeat protein [F 100.0 2.3E-32 5.1E-37 316.6 46.0 605 26-831 39-714 (1080)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-34 2.7E-39 322.1 24.2 275 500-880 174-458 (459)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-34 2.7E-39 322.1 24.0 281 296-828 174-458 (459)
15 KOG0279 G protein beta subunit 100.0 2.8E-32 6.1E-37 290.0 33.0 291 491-882 5-313 (315)
16 KOG0315 G-protein beta subunit 100.0 2.5E-31 5.5E-36 278.1 28.5 273 529-887 10-293 (311)
17 KOG1063 RNA polymerase II elon 100.0 7.8E-29 1.7E-33 289.5 51.9 617 27-830 17-763 (764)
18 KOG0307 Vesicle coat complex C 100.0 4.4E-31 9.5E-36 324.5 32.5 589 502-1334 65-679 (1049)
19 KOG1408 WD40 repeat protein [F 100.0 3.4E-29 7.4E-34 290.6 39.1 549 23-784 77-714 (1080)
20 KOG0295 WD40 repeat-containing 100.0 1.6E-30 3.4E-35 285.0 23.7 282 494-880 101-404 (406)
21 KOG0276 Vesicle coat complex C 100.0 2.7E-27 5.9E-32 272.9 50.2 275 77-580 15-290 (794)
22 KOG0286 G-protein beta subunit 100.0 5.2E-28 1.1E-32 258.7 33.3 292 129-596 51-343 (343)
23 KOG1539 WD repeat protein [Gen 100.0 5.5E-26 1.2E-30 270.3 53.0 566 12-828 61-646 (910)
24 KOG0273 Beta-transducin family 100.0 1.3E-27 2.9E-32 269.1 32.5 246 499-882 274-523 (524)
25 KOG0279 G protein beta subunit 100.0 4.2E-27 9.2E-32 250.7 33.5 234 53-362 4-244 (315)
26 KOG0313 Microtubule binding pr 100.0 6.7E-28 1.5E-32 265.6 26.1 301 500-882 104-418 (423)
27 KOG0315 G-protein beta subunit 100.0 1.3E-27 2.8E-32 250.5 26.7 262 13-335 31-296 (311)
28 KOG0281 Beta-TrCP (transducin 100.0 5.5E-29 1.2E-33 269.7 16.9 268 501-885 197-480 (499)
29 KOG0645 WD40 repeat protein [G 100.0 6.5E-27 1.4E-31 248.3 31.5 290 493-882 6-311 (312)
30 KOG0273 Beta-transducin family 100.0 6.4E-27 1.4E-31 263.6 32.6 327 175-662 174-502 (524)
31 KOG0286 G-protein beta subunit 100.0 1.4E-26 3.1E-31 247.8 32.7 290 15-417 48-343 (343)
32 KOG2106 Uncharacterized conser 100.0 1.3E-24 2.9E-29 246.0 50.3 526 27-829 68-625 (626)
33 KOG0293 WD40 repeat-containing 100.0 5.9E-28 1.3E-32 267.4 22.3 298 54-547 214-513 (519)
34 KOG1539 WD repeat protein [Gen 100.0 4.4E-24 9.5E-29 254.3 53.9 555 37-881 49-647 (910)
35 KOG0285 Pleiotropic regulator 100.0 3.7E-27 8.1E-32 257.1 25.6 292 486-882 136-439 (460)
36 KOG0295 WD40 repeat-containing 100.0 2.7E-27 5.8E-32 259.7 24.3 295 295-829 106-405 (406)
37 KOG0296 Angio-associated migra 100.0 4.6E-26 1E-30 250.3 33.0 343 56-598 56-398 (399)
38 KOG0296 Angio-associated migra 100.0 5.1E-26 1.1E-30 250.0 32.5 338 129-642 60-397 (399)
39 KOG0263 Transcription initiati 99.9 4.3E-27 9.4E-32 280.5 22.5 268 502-885 379-652 (707)
40 KOG0284 Polyadenylation factor 99.9 2.1E-27 4.6E-32 263.4 18.3 279 501-883 96-381 (464)
41 KOG0281 Beta-TrCP (transducin 99.9 8.9E-28 1.9E-32 260.4 14.9 238 497-835 233-482 (499)
42 KOG0282 mRNA splicing factor [ 99.9 3.4E-27 7.3E-32 267.2 19.7 282 496-880 209-503 (503)
43 PLN00181 protein SPA1-RELATED; 99.9 2.7E-25 5.8E-30 290.8 39.2 286 495-881 477-792 (793)
44 KOG0265 U5 snRNP-specific prot 99.9 4.7E-26 1E-30 244.9 26.1 278 496-879 42-335 (338)
45 KOG2048 WD40 repeat protein [G 99.9 2.6E-23 5.7E-28 243.7 50.2 502 69-830 19-548 (691)
46 cd00200 WD40 WD40 domain, foun 99.9 5.8E-25 1.3E-29 246.3 35.3 278 497-880 5-289 (289)
47 KOG2041 WD40 repeat protein [G 99.9 2.6E-23 5.5E-28 241.7 48.7 113 1169-1284 856-984 (1189)
48 KOG1063 RNA polymerase II elon 99.9 2.3E-24 5E-29 252.3 38.7 584 10-783 89-763 (764)
49 KOG0266 WD40 repeat-containing 99.9 2.6E-25 5.6E-30 272.1 32.0 257 17-333 153-415 (456)
50 KOG0263 Transcription initiati 99.9 2.4E-26 5.1E-31 274.2 21.7 253 8-328 365-650 (707)
51 KOG0266 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 269.2 33.5 282 501-882 159-454 (456)
52 KOG0292 Vesicle coat complex C 99.9 2.1E-25 4.5E-30 265.1 25.9 289 498-884 6-323 (1202)
53 cd00200 WD40 WD40 domain, foun 99.9 4.8E-24 1E-28 238.9 35.2 284 17-417 4-289 (289)
54 KOG0276 Vesicle coat complex C 99.9 8.8E-25 1.9E-29 252.4 27.2 276 498-876 10-293 (794)
55 KOG0645 WD40 repeat protein [G 99.9 1E-23 2.2E-28 224.1 33.2 213 55-327 5-225 (312)
56 KOG0285 Pleiotropic regulator 99.9 9.1E-25 2E-29 238.6 25.8 303 8-421 133-441 (460)
57 KOG0292 Vesicle coat complex C 99.9 1.9E-22 4E-27 240.2 47.0 269 26-335 11-288 (1202)
58 KOG0282 mRNA splicing factor [ 99.9 2.8E-25 6E-30 251.7 22.2 209 55-327 205-415 (503)
59 KOG0265 U5 snRNP-specific prot 99.9 2.1E-24 4.7E-29 232.1 27.2 209 56-328 39-247 (338)
60 KOG0277 Peroxisomal targeting 99.9 2E-24 4.3E-29 227.3 22.9 258 537-881 36-308 (311)
61 KOG0293 WD40 repeat-containing 99.9 2.8E-24 6.1E-29 238.4 23.5 282 496-882 219-513 (519)
62 KOG2106 Uncharacterized conser 99.9 9.5E-22 2.1E-26 223.0 43.3 505 23-782 103-625 (626)
63 PLN00181 protein SPA1-RELATED; 99.9 9.9E-23 2.2E-27 266.6 40.7 244 23-330 482-741 (793)
64 KOG0275 Conserved WD40 repeat- 99.9 8.2E-25 1.8E-29 235.2 15.6 279 396-828 220-507 (508)
65 KOG0284 Polyadenylation factor 99.9 2.1E-24 4.5E-29 239.8 17.6 283 75-546 96-379 (464)
66 KOG0316 Conserved WD40 repeat- 99.9 9E-23 1.9E-27 212.6 26.1 279 497-881 13-298 (307)
67 KOG0274 Cdc4 and related F-box 99.9 6.5E-23 1.4E-27 250.9 29.2 237 497-835 245-487 (537)
68 KOG0274 Cdc4 and related F-box 99.9 1.1E-22 2.4E-27 248.9 29.0 260 530-887 219-487 (537)
69 KOG1538 Uncharacterized conser 99.9 5.3E-20 1.2E-24 213.1 48.5 146 26-208 14-160 (1081)
70 KOG0313 Microtubule binding pr 99.9 5E-22 1.1E-26 219.5 25.5 242 498-829 141-417 (423)
71 KOG0316 Conserved WD40 repeat- 99.9 8.4E-22 1.8E-26 205.4 25.4 252 56-422 9-260 (307)
72 KOG2048 WD40 repeat protein [G 99.9 2.6E-18 5.6E-23 202.1 56.5 524 26-805 27-582 (691)
73 KOG0278 Serine/threonine kinas 99.9 1.5E-22 3.2E-27 212.4 18.6 295 55-550 5-300 (334)
74 KOG0268 Sof1-like rRNA process 99.9 5.8E-23 1.2E-27 225.3 16.2 282 493-886 58-349 (433)
75 PTZ00421 coronin; Provisional 99.9 1.3E-20 2.9E-25 230.4 34.8 214 59-333 70-296 (493)
76 KOG0294 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 206.3 25.3 239 497-833 39-284 (362)
77 KOG0275 Conserved WD40 repeat- 99.9 6E-22 1.3E-26 213.3 16.8 248 27-335 216-475 (508)
78 PTZ00420 coronin; Provisional 99.9 2.6E-20 5.7E-25 228.8 33.1 230 44-330 54-296 (568)
79 KOG0305 Anaphase promoting com 99.9 1E-20 2.2E-25 223.8 27.8 276 28-421 181-463 (484)
80 KOG0973 Histone transcription 99.9 6.7E-21 1.4E-25 234.8 27.0 249 494-833 62-358 (942)
81 KOG1407 WD40 repeat protein [F 99.9 2.1E-20 4.6E-25 197.9 26.2 251 58-422 14-264 (313)
82 KOG0278 Serine/threonine kinas 99.9 2.9E-21 6.3E-26 202.7 18.7 288 130-601 11-300 (334)
83 KOG0301 Phospholipase A2-activ 99.9 1.2E-20 2.5E-25 221.8 25.7 278 493-883 6-289 (745)
84 KOG0300 WD40 repeat-containing 99.9 1.1E-20 2.3E-25 203.5 23.1 311 484-885 131-479 (481)
85 KOG1446 Histone H3 (Lys4) meth 99.9 2.8E-19 6E-24 195.1 34.4 250 26-335 16-270 (311)
86 KOG0288 WD40 repeat protein Ti 99.9 1.1E-21 2.5E-26 218.6 15.2 276 497-880 171-459 (459)
87 KOG1407 WD40 repeat protein [F 99.9 5E-20 1.1E-24 195.1 26.2 268 497-873 16-293 (313)
88 KOG0283 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 226.6 24.6 214 57-335 259-540 (712)
89 KOG0283 WD40 repeat-containing 99.9 2.3E-20 5.1E-25 225.2 25.5 254 494-882 259-576 (712)
90 PTZ00421 coronin; Provisional 99.9 1.6E-19 3.4E-24 220.9 33.2 263 259-664 26-314 (493)
91 KOG0647 mRNA export protein (c 99.9 8.9E-20 1.9E-24 196.8 26.4 258 501-857 27-304 (347)
92 KOG0310 Conserved WD40 repeat- 99.9 6E-20 1.3E-24 209.2 26.0 297 9-420 11-310 (487)
93 KOG0640 mRNA cleavage stimulat 99.9 3E-20 6.6E-25 199.9 21.8 258 17-335 107-391 (430)
94 KOG0643 Translation initiation 99.9 1.8E-19 3.9E-24 191.3 27.2 278 497-882 6-317 (327)
95 KOG1446 Histone H3 (Lys4) meth 99.9 7.7E-19 1.7E-23 191.7 32.7 279 501-882 14-303 (311)
96 PTZ00420 coronin; Provisional 99.9 1.7E-19 3.6E-24 221.7 30.9 226 534-885 49-296 (568)
97 KOG0288 WD40 repeat protein Ti 99.9 8.2E-21 1.8E-25 211.8 17.5 244 17-325 214-459 (459)
98 KOG0643 Translation initiation 99.9 1.8E-19 3.9E-24 191.4 26.4 219 59-335 5-228 (327)
99 KOG0973 Histone transcription 99.9 9.2E-20 2E-24 224.9 27.7 289 27-423 16-359 (942)
100 KOG0640 mRNA cleavage stimulat 99.8 7.5E-20 1.6E-24 196.9 22.7 283 497-882 108-426 (430)
101 KOG0305 Anaphase promoting com 99.8 5.2E-20 1.1E-24 217.8 23.5 238 24-327 217-461 (484)
102 KOG0264 Nucleosome remodeling 99.8 5.8E-20 1.3E-24 208.3 21.3 247 499-882 122-404 (422)
103 KOG0277 Peroxisomal targeting 99.8 4.3E-20 9.3E-25 194.9 18.7 238 27-326 63-308 (311)
104 KOG0641 WD40 repeat protein [G 99.8 2.5E-18 5.3E-23 177.9 30.5 246 500-882 88-349 (350)
105 KOG0310 Conserved WD40 repeat- 99.8 1.7E-19 3.8E-24 205.5 24.0 238 27-329 71-311 (487)
106 KOG0301 Phospholipase A2-activ 99.8 2.7E-19 5.8E-24 210.5 24.7 213 528-830 70-288 (745)
107 KOG1445 Tumor-specific antigen 99.8 1.6E-17 3.4E-22 192.1 36.6 232 37-327 45-293 (1012)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.8E-17 3.9E-22 190.5 37.3 191 102-335 2-195 (300)
109 KOG0289 mRNA splicing factor [ 99.8 1.3E-18 2.7E-23 195.2 26.1 274 502-881 220-505 (506)
110 KOG0772 Uncharacterized conser 99.8 2.9E-19 6.2E-24 203.5 20.3 260 549-888 157-451 (641)
111 KOG0772 Uncharacterized conser 99.8 2.7E-18 5.9E-23 195.6 25.6 216 57-328 160-395 (641)
112 KOG2096 WD40 repeat protein [G 99.8 1.4E-17 3E-22 180.4 28.6 317 112-641 62-400 (420)
113 KOG0299 U3 snoRNP-associated p 99.8 4.2E-18 9.2E-23 192.9 25.0 287 499-886 140-460 (479)
114 KOG0650 WD40 repeat nucleolar 99.8 4.7E-18 1E-22 196.6 24.7 291 496-879 395-732 (733)
115 KOG1332 Vesicle coat complex C 99.8 2.6E-18 5.7E-23 180.6 20.7 253 556-885 8-289 (299)
116 KOG0300 WD40 repeat-containing 99.8 7.2E-18 1.6E-22 181.8 24.1 324 294-784 145-477 (481)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.6E-17 1.4E-21 185.8 34.1 272 37-425 3-285 (300)
118 KOG0264 Nucleosome remodeling 99.8 2E-18 4.3E-23 196.0 20.8 248 23-327 123-404 (422)
119 KOG0294 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 181.6 25.2 249 12-329 31-283 (362)
120 KOG1445 Tumor-specific antigen 99.8 2.6E-17 5.6E-22 190.3 28.4 168 385-642 626-797 (1012)
121 KOG2096 WD40 repeat protein [G 99.8 3.2E-17 6.9E-22 177.7 27.0 313 46-579 63-393 (420)
122 KOG0289 mRNA splicing factor [ 99.8 2.1E-17 4.4E-22 185.6 26.3 257 9-329 199-464 (506)
123 KOG0308 Conserved WD40 repeat- 99.8 1.3E-18 2.8E-23 203.3 17.3 280 528-884 36-329 (735)
124 KOG0299 U3 snoRNP-associated p 99.8 9.5E-18 2.1E-22 190.0 22.9 247 553-884 136-412 (479)
125 KOG0646 WD40 repeat protein [G 99.8 7E-18 1.5E-22 191.5 21.5 225 500-805 80-330 (476)
126 KOG1332 Vesicle coat complex C 99.8 7.4E-18 1.6E-22 177.2 19.1 240 528-828 22-284 (299)
127 KOG2055 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 186.4 24.1 285 502-882 214-512 (514)
128 KOG1036 Mitotic spindle checkp 99.8 8.1E-17 1.7E-21 175.1 26.4 262 502-871 14-293 (323)
129 KOG0308 Conserved WD40 repeat- 99.8 1.3E-17 2.9E-22 194.9 21.8 246 263-646 35-287 (735)
130 KOG0647 mRNA export protein (c 99.8 6.8E-17 1.5E-21 174.7 25.6 249 16-328 20-282 (347)
131 KOG0268 Sof1-like rRNA process 99.8 6.2E-18 1.3E-22 186.1 17.5 283 17-421 61-347 (433)
132 KOG0641 WD40 repeat protein [G 99.8 8.9E-16 1.9E-20 159.1 31.0 307 179-642 32-348 (350)
133 KOG0321 WD40 repeat-containing 99.8 1.2E-16 2.5E-21 186.7 25.4 306 528-884 63-393 (720)
134 KOG1963 WD40 repeat protein [G 99.8 1.6E-15 3.4E-20 184.2 35.8 478 25-650 17-589 (792)
135 KOG0321 WD40 repeat-containing 99.7 8.3E-17 1.8E-21 188.0 22.9 217 100-328 63-302 (720)
136 KOG0646 WD40 repeat protein [G 99.7 4.6E-17 1E-21 184.9 19.9 232 17-301 79-325 (476)
137 KOG1273 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 172.0 22.8 201 77-327 25-226 (405)
138 KOG0267 Microtubule severing p 99.7 3.2E-18 7E-23 201.9 10.0 238 530-857 5-249 (825)
139 KOG0302 Ribosome Assembly prot 99.7 6.9E-17 1.5E-21 178.8 19.4 244 499-879 149-435 (440)
140 KOG4283 Transcription-coupled 99.7 2.4E-16 5.3E-21 169.3 22.5 185 529-782 158-364 (397)
141 KOG0639 Transducin-like enhanc 99.7 2.5E-16 5.4E-21 178.8 21.2 285 178-642 418-703 (705)
142 KOG2055 WD40 repeat protein [G 99.7 1.6E-15 3.6E-20 171.8 26.4 201 75-328 213-418 (514)
143 KOG2445 Nuclear pore complex c 99.7 2.9E-15 6.4E-20 162.5 26.8 261 499-884 11-320 (361)
144 KOG1036 Mitotic spindle checkp 99.7 5.7E-15 1.2E-19 160.8 28.1 189 76-322 14-202 (323)
145 COG2319 FOG: WD40 repeat [Gene 99.7 5.1E-13 1.1E-17 157.2 47.1 375 59-645 60-443 (466)
146 KOG1274 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 182.2 27.2 246 22-328 11-263 (933)
147 KOG0269 WD40 repeat-containing 99.7 2.2E-16 4.8E-21 188.0 16.1 234 28-323 91-336 (839)
148 KOG4283 Transcription-coupled 99.7 5.4E-15 1.2E-19 159.1 25.0 274 22-335 41-331 (397)
149 KOG0639 Transducin-like enhanc 99.7 6.9E-16 1.5E-20 175.2 19.0 243 25-330 420-666 (705)
150 KOG0270 WD40 repeat-containing 99.7 1.3E-15 2.7E-20 172.4 20.2 235 528-839 191-458 (463)
151 KOG0269 WD40 repeat-containing 99.7 2.8E-16 6E-21 187.2 15.5 228 528-882 99-340 (839)
152 COG2319 FOG: WD40 repeat [Gene 99.7 2.2E-12 4.7E-17 151.9 48.2 281 499-883 153-443 (466)
153 KOG1034 Transcriptional repres 99.7 1.1E-15 2.3E-20 167.1 17.7 262 529-882 105-383 (385)
154 KOG1034 Transcriptional repres 99.7 1.3E-15 2.8E-20 166.4 18.2 260 21-327 86-383 (385)
155 KOG1273 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 160.4 22.8 258 18-328 17-323 (405)
156 KOG1963 WD40 repeat protein [G 99.7 4.7E-13 1E-17 163.0 38.9 304 500-883 204-539 (792)
157 KOG0302 Ribosome Assembly prot 99.6 1.2E-15 2.5E-20 169.3 13.3 165 17-211 206-379 (440)
158 KOG0307 Vesicle coat complex C 99.6 9.5E-16 2.1E-20 190.3 13.9 253 18-329 57-329 (1049)
159 KOG1274 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 169.1 29.1 261 499-857 11-281 (933)
160 KOG2445 Nuclear pore complex c 99.6 1.3E-13 2.9E-18 149.7 27.4 117 77-209 15-143 (361)
161 KOG0650 WD40 repeat nucleolar 99.6 5.5E-14 1.2E-18 163.4 25.6 333 57-640 393-732 (733)
162 KOG1009 Chromatin assembly com 99.6 1.2E-14 2.6E-19 162.9 19.5 275 25-330 14-375 (434)
163 KOG0267 Microtubule severing p 99.6 8.3E-16 1.8E-20 181.8 10.5 231 23-318 27-259 (825)
164 KOG4378 Nuclear protein COP1 [ 99.6 3.1E-14 6.7E-19 161.9 21.7 250 37-335 5-289 (673)
165 KOG1538 Uncharacterized conser 99.6 1.6E-11 3.5E-16 143.7 43.9 147 77-281 14-160 (1081)
166 KOG4328 WD40 protein [Function 99.6 8.4E-14 1.8E-18 158.1 23.8 286 500-881 185-494 (498)
167 KOG0270 WD40 repeat-containing 99.6 8.2E-14 1.8E-18 157.9 21.6 254 10-330 162-452 (463)
168 KOG1188 WD40 repeat protein [G 99.6 2.7E-13 5.8E-18 149.4 23.1 200 37-290 42-249 (376)
169 KOG4378 Nuclear protein COP1 [ 99.6 3.1E-13 6.7E-18 153.9 23.7 299 102-574 5-308 (673)
170 KOG4328 WD40 protein [Function 99.6 2E-13 4.4E-18 155.0 22.0 249 26-330 188-453 (498)
171 KOG2919 Guanine nucleotide-bin 99.5 3.8E-13 8.3E-18 146.8 20.8 257 28-334 53-335 (406)
172 KOG0303 Actin-binding protein 99.5 1.4E-13 3.1E-18 153.5 16.7 211 58-329 75-296 (472)
173 KOG1009 Chromatin assembly com 99.5 1.3E-12 2.8E-17 146.8 23.6 128 494-650 58-201 (434)
174 KOG0644 Uncharacterized conser 99.5 4.6E-14 1E-18 168.7 10.8 282 496-882 185-468 (1113)
175 KOG1007 WD repeat protein TSSC 99.5 4E-12 8.6E-17 137.1 22.3 271 537-882 38-361 (370)
176 KOG1240 Protein kinase contain 99.5 1.8E-11 3.8E-16 152.6 29.5 228 49-335 1034-1281(1431)
177 KOG2919 Guanine nucleotide-bin 99.5 6.4E-12 1.4E-16 137.4 22.5 242 562-883 52-328 (406)
178 KOG1188 WD40 repeat protein [G 99.4 5.2E-12 1.1E-16 139.4 21.0 272 529-882 40-346 (376)
179 KOG0644 Uncharacterized conser 99.4 2E-13 4.4E-18 163.3 10.2 119 55-209 181-299 (1113)
180 KOG0322 G-protein beta subunit 99.4 1.4E-12 2.9E-17 139.3 15.2 238 499-829 12-322 (323)
181 KOG0642 Cell-cycle nuclear pro 99.4 9.2E-13 2E-17 153.3 15.2 248 498-834 291-565 (577)
182 KOG1517 Guanine nucleotide bin 99.4 2.7E-11 5.8E-16 148.7 24.8 165 100-329 1075-1241(1387)
183 KOG1007 WD repeat protein TSSC 99.4 8.1E-12 1.8E-16 134.8 17.3 246 8-282 108-360 (370)
184 PRK01742 tolB translocation pr 99.4 1.8E-11 3.9E-16 149.6 21.7 233 538-857 183-426 (429)
185 PRK11028 6-phosphogluconolacto 99.4 4.7E-10 1E-14 132.3 32.1 230 39-328 7-259 (330)
186 KOG4497 Uncharacterized conser 99.4 6.4E-11 1.4E-15 129.7 22.4 225 29-326 13-239 (447)
187 KOG0290 Conserved WD40 repeat- 99.4 1.5E-11 3.3E-16 132.9 17.3 246 560-884 45-320 (364)
188 KOG1310 WD40 repeat protein [G 99.4 6.9E-12 1.5E-16 144.6 14.8 244 17-292 45-312 (758)
189 KOG0771 Prolactin regulatory e 99.4 6.7E-12 1.4E-16 142.4 14.2 195 98-327 153-354 (398)
190 PRK11028 6-phosphogluconolacto 99.3 4.8E-10 1E-14 132.3 29.9 245 25-327 35-304 (330)
191 KOG0322 G-protein beta subunit 99.3 2.6E-11 5.7E-16 129.6 16.1 252 16-326 8-322 (323)
192 KOG4227 WD40 repeat protein [G 99.3 1.7E-10 3.6E-15 128.3 22.1 257 14-327 48-322 (609)
193 KOG0303 Actin-binding protein 99.3 1.5E-10 3.2E-15 129.8 21.5 126 23-179 80-215 (472)
194 KOG4227 WD40 repeat protein [G 99.3 2E-10 4.2E-15 127.8 21.9 287 497-881 52-386 (609)
195 KOG1912 WD40 repeat protein [G 99.3 1E-08 2.2E-13 123.0 37.0 103 37-165 81-184 (1062)
196 KOG2139 WD40 repeat protein [G 99.3 9.6E-10 2.1E-14 122.3 26.4 238 27-327 101-383 (445)
197 KOG1334 WD40 repeat protein [G 99.3 4.1E-11 8.9E-16 137.3 15.7 266 23-335 141-432 (559)
198 KOG1517 Guanine nucleotide bin 99.3 6.9E-10 1.5E-14 136.6 27.2 273 9-335 1052-1340(1387)
199 KOG1587 Cytoplasmic dynein int 99.3 6E-10 1.3E-14 136.5 26.9 266 538-882 221-516 (555)
200 PRK01742 tolB translocation pr 99.3 1.9E-10 4E-15 140.7 22.8 207 588-882 182-401 (429)
201 KOG0771 Prolactin regulatory e 99.3 5.3E-11 1.2E-15 135.2 16.1 199 28-284 148-355 (398)
202 KOG0642 Cell-cycle nuclear pro 99.3 3.2E-11 7E-16 140.7 14.6 260 11-329 283-563 (577)
203 KOG1587 Cytoplasmic dynein int 99.3 6.9E-10 1.5E-14 136.0 26.9 232 45-328 223-473 (555)
204 KOG2041 WD40 repeat protein [G 99.3 1.1E-06 2.3E-11 104.9 51.0 157 77-284 16-187 (1189)
205 KOG0290 Conserved WD40 repeat- 99.3 8.9E-10 1.9E-14 119.4 23.5 272 528-879 58-362 (364)
206 KOG3617 WD40 and TPR repeat-co 99.3 1.1E-07 2.4E-12 114.7 42.9 295 26-418 17-332 (1416)
207 KOG1240 Protein kinase contain 99.3 1.1E-09 2.4E-14 136.9 27.1 190 116-335 1034-1233(1431)
208 KOG0649 WD40 repeat protein [G 99.3 5.2E-10 1.1E-14 118.4 20.6 136 717-882 126-274 (325)
209 PRK03629 tolB translocation pr 99.2 1.8E-09 3.9E-14 131.9 27.1 234 539-857 179-428 (429)
210 KOG1523 Actin-related protein 99.2 9.1E-10 2E-14 121.1 20.2 232 27-310 13-262 (361)
211 PF02239 Cytochrom_D1: Cytochr 99.2 5E-08 1.1E-12 116.4 35.9 337 150-653 6-356 (369)
212 PF02239 Cytochrom_D1: Cytochr 99.2 5.4E-08 1.2E-12 116.1 36.0 189 42-292 14-211 (369)
213 PRK04922 tolB translocation pr 99.2 8.2E-09 1.8E-13 126.5 28.2 212 588-882 182-411 (433)
214 PRK05137 tolB translocation pr 99.1 9.8E-09 2.1E-13 125.9 27.5 233 539-857 182-433 (435)
215 PRK03629 tolB translocation pr 99.1 1.2E-08 2.6E-13 124.7 26.7 211 588-882 177-406 (429)
216 KOG1334 WD40 repeat protein [G 99.1 4.7E-10 1E-14 128.8 13.0 129 55-211 133-264 (559)
217 KOG1524 WD40 repeat-containing 99.1 1.6E-09 3.6E-14 125.1 17.0 174 611-878 102-282 (737)
218 PRK04922 tolB translocation pr 99.1 8.1E-09 1.7E-13 126.6 24.4 233 539-856 184-432 (433)
219 PRK02889 tolB translocation pr 99.1 8.7E-09 1.9E-13 126.0 24.5 236 539-857 176-425 (427)
220 KOG2110 Uncharacterized conser 99.1 2.1E-08 4.5E-13 112.6 24.8 162 14-211 82-249 (391)
221 KOG0649 WD40 repeat protein [G 99.1 1.3E-08 2.9E-13 108.0 21.9 241 26-327 12-274 (325)
222 PRK05137 tolB translocation pr 99.1 1.5E-08 3.2E-13 124.4 25.8 204 45-318 183-397 (435)
223 KOG2394 WD40 protein DMR-N9 [G 99.1 7.5E-09 1.6E-13 120.3 21.2 183 98-330 182-365 (636)
224 KOG1272 WD40-repeat-containing 99.1 6.2E-10 1.3E-14 127.2 11.6 255 528-874 140-401 (545)
225 KOG4497 Uncharacterized conser 99.1 1.3E-08 2.8E-13 112.0 21.3 395 259-874 14-424 (447)
226 PRK02889 tolB translocation pr 99.1 1.5E-08 3.2E-13 124.0 24.1 216 36-319 164-392 (427)
227 KOG2394 WD40 protein DMR-N9 [G 99.0 1E-08 2.3E-13 119.1 20.4 120 756-885 291-455 (636)
228 KOG1523 Actin-related protein 99.0 2.6E-08 5.7E-13 109.8 22.4 242 559-882 10-278 (361)
229 PF08662 eIF2A: Eukaryotic tra 99.0 1E-08 2.2E-13 111.5 19.3 109 77-211 61-180 (194)
230 KOG1310 WD40 repeat protein [G 99.0 4.7E-09 1E-13 121.6 16.7 177 56-281 42-229 (758)
231 KOG0974 WD-repeat protein WDR6 99.0 2E-06 4.4E-11 107.7 37.9 142 150-327 100-246 (967)
232 PF08662 eIF2A: Eukaryotic tra 98.9 6.3E-08 1.4E-12 105.3 19.6 112 539-664 37-154 (194)
233 KOG0974 WD-repeat protein WDR6 98.9 5.8E-08 1.3E-12 121.1 21.4 194 614-884 88-290 (967)
234 KOG2110 Uncharacterized conser 98.9 2.3E-07 4.9E-12 104.4 23.9 158 77-328 89-249 (391)
235 KOG1524 WD40 repeat-containing 98.9 5.2E-08 1.1E-12 112.9 19.2 234 26-322 16-250 (737)
236 KOG2139 WD40 repeat protein [G 98.9 7.8E-07 1.7E-11 99.6 26.8 227 13-286 130-386 (445)
237 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.3E-06 7.1E-11 99.1 32.8 255 44-335 27-338 (352)
238 TIGR02800 propeller_TolB tol-p 98.8 3.4E-07 7.3E-12 111.7 24.9 207 45-321 171-388 (417)
239 COG4946 Uncharacterized protei 98.8 0.00033 7.3E-09 81.2 46.4 106 502-632 402-507 (668)
240 KOG1272 WD40-repeat-containing 98.8 5.9E-09 1.3E-13 119.3 7.9 234 29-330 175-412 (545)
241 TIGR02800 propeller_TolB tol-p 98.8 5E-07 1.1E-11 110.2 25.2 213 539-831 170-398 (417)
242 KOG3881 Uncharacterized conser 98.8 1.7E-07 3.7E-12 106.0 18.7 135 501-662 202-340 (412)
243 KOG1354 Serine/threonine prote 98.8 3.6E-07 7.8E-12 101.6 19.9 269 24-330 25-362 (433)
244 KOG2111 Uncharacterized conser 98.8 1.5E-06 3.3E-11 96.2 24.7 238 27-328 8-257 (346)
245 PRK00178 tolB translocation pr 98.8 1.2E-06 2.6E-11 107.5 26.8 235 540-857 180-428 (430)
246 KOG3881 Uncharacterized conser 98.8 2.6E-07 5.6E-12 104.6 18.5 227 537-836 77-326 (412)
247 KOG2321 WD40 repeat protein [G 98.8 1.2E-06 2.5E-11 103.1 23.6 279 136-579 53-333 (703)
248 KOG2111 Uncharacterized conser 98.7 7.5E-07 1.6E-11 98.6 19.8 113 27-168 137-257 (346)
249 KOG2321 WD40 repeat protein [G 98.7 2.5E-06 5.5E-11 100.3 24.6 281 499-882 49-343 (703)
250 KOG1354 Serine/threonine prote 98.7 8.7E-07 1.9E-11 98.6 18.9 237 528-833 36-362 (433)
251 PRK04792 tolB translocation pr 98.7 3E-06 6.5E-11 104.3 26.0 235 540-857 199-447 (448)
252 PRK01029 tolB translocation pr 98.7 6.1E-06 1.3E-10 100.9 27.8 224 45-330 166-406 (428)
253 PRK00178 tolB translocation pr 98.7 4E-06 8.6E-11 102.9 26.3 209 591-882 180-404 (430)
254 PRK04792 tolB translocation pr 98.7 3.5E-06 7.6E-11 103.7 25.6 208 590-880 198-421 (448)
255 TIGR03300 assembly_YfgL outer 98.7 2.5E-05 5.4E-10 94.1 32.5 195 101-335 65-267 (377)
256 KOG4547 WD40 repeat-containing 98.7 5.3E-07 1.2E-11 107.0 17.1 211 622-884 2-222 (541)
257 KOG2315 Predicted translation 98.6 3.7E-05 8.1E-10 91.0 31.7 131 501-663 270-410 (566)
258 PRK01029 tolB translocation pr 98.6 5E-06 1.1E-10 101.7 24.9 205 534-805 204-425 (428)
259 PF04762 IKI3: IKI3 family; I 98.6 0.0011 2.4E-08 87.9 47.6 264 527-882 219-519 (928)
260 KOG3617 WD40 and TPR repeat-co 98.6 2.5E-05 5.5E-10 95.1 29.2 93 1169-1263 804-897 (1416)
261 TIGR02658 TTQ_MADH_Hv methylam 98.6 6.7E-05 1.5E-09 88.2 32.3 272 539-888 27-336 (352)
262 TIGR03300 assembly_YfgL outer 98.6 0.00011 2.5E-09 88.4 34.7 232 35-334 65-304 (377)
263 KOG2315 Predicted translation 98.5 5.8E-06 1.3E-10 97.7 21.6 241 29-330 130-392 (566)
264 PF10282 Lactonase: Lactonase, 98.5 0.0013 2.7E-08 78.5 41.7 193 111-327 13-222 (345)
265 COG5354 Uncharacterized protei 98.5 0.00011 2.3E-09 86.3 30.9 182 77-315 34-240 (561)
266 KOG4547 WD40 repeat-containing 98.5 8.7E-06 1.9E-10 97.0 22.3 193 99-327 3-220 (541)
267 PF10282 Lactonase: Lactonase, 98.5 0.00021 4.6E-09 85.1 34.1 253 26-330 38-327 (345)
268 COG5354 Uncharacterized protei 98.5 0.00016 3.5E-09 84.9 30.1 247 27-328 35-307 (561)
269 PF04762 IKI3: IKI3 family; I 98.4 0.033 7.2E-07 74.2 56.5 213 76-329 76-335 (928)
270 PF07433 DUF1513: Protein of u 98.4 8.5E-05 1.8E-09 84.6 24.7 232 27-317 7-276 (305)
271 PLN02919 haloacid dehalogenase 98.3 0.00019 4.2E-09 96.6 30.6 255 528-833 579-891 (1057)
272 KOG0280 Uncharacterized conser 98.3 9.3E-06 2E-10 89.2 14.0 152 29-209 126-283 (339)
273 KOG2314 Translation initiation 98.3 0.0006 1.3E-08 80.7 29.5 109 183-327 214-334 (698)
274 KOG3914 WD repeat protein WDR4 98.3 5.1E-06 1.1E-10 94.9 12.2 77 752-835 148-228 (390)
275 KOG0280 Uncharacterized conser 98.3 5.3E-05 1.2E-09 83.4 19.3 145 718-883 134-285 (339)
276 COG4946 Uncharacterized protei 98.3 0.00013 2.9E-09 84.4 23.1 226 32-317 274-508 (668)
277 PLN02919 haloacid dehalogenase 98.2 0.00061 1.3E-08 91.9 32.4 265 28-330 571-891 (1057)
278 KOG2314 Translation initiation 98.2 0.00062 1.4E-08 80.5 25.9 179 77-313 212-409 (698)
279 PRK04043 tolB translocation pr 98.1 0.00051 1.1E-08 83.8 26.3 190 77-325 189-396 (419)
280 PRK11138 outer membrane biogen 98.1 0.0021 4.6E-08 78.0 31.2 200 101-334 69-281 (394)
281 PF15492 Nbas_N: Neuroblastoma 98.1 0.0019 4.1E-08 71.9 26.9 146 30-200 3-167 (282)
282 PF13360 PQQ_2: PQQ-like domai 98.1 0.0023 4.9E-08 71.5 28.7 187 109-333 1-197 (238)
283 PF13360 PQQ_2: PQQ-like domai 98.1 0.00086 1.9E-08 74.9 25.0 231 43-333 2-236 (238)
284 KOG0309 Conserved WD40 repeat- 98.1 5.7E-05 1.2E-09 91.2 15.7 207 26-288 26-237 (1081)
285 KOG1409 Uncharacterized conser 98.0 0.00011 2.4E-09 82.4 15.7 244 551-884 16-272 (404)
286 KOG1064 RAVE (regulator of V-A 98.0 4.7E-05 1E-09 99.6 13.8 220 25-320 2209-2439(2439)
287 KOG1409 Uncharacterized conser 98.0 7E-05 1.5E-09 84.0 13.3 250 492-832 15-272 (404)
288 COG2706 3-carboxymuconate cycl 97.9 0.044 9.5E-07 63.0 34.6 195 110-328 15-222 (346)
289 PF00400 WD40: WD domain, G-be 97.9 2.3E-05 5E-10 61.5 6.0 39 54-117 1-39 (39)
290 KOG3914 WD repeat protein WDR4 97.9 3.1E-05 6.6E-10 88.7 8.9 128 18-177 104-233 (390)
291 PF08450 SGL: SMP-30/Gluconola 97.9 0.022 4.8E-07 64.3 32.2 225 29-316 4-244 (246)
292 PF12931 Sec16_C: Sec23-bindin 97.9 5.9E-05 1.3E-09 87.0 11.0 127 1119-1255 2-146 (284)
293 PRK04043 tolB translocation pr 97.9 0.0021 4.6E-08 78.4 25.0 109 528-648 198-313 (419)
294 KOG1064 RAVE (regulator of V-A 97.9 4E-05 8.8E-10 100.2 10.0 187 98-335 2217-2406(2439)
295 KOG4190 Uncharacterized conser 97.9 3E-05 6.5E-10 90.3 7.8 194 102-330 748-951 (1034)
296 COG5170 CDC55 Serine/threonine 97.9 0.00033 7.2E-09 77.4 15.4 255 502-831 27-368 (460)
297 KOG0309 Conserved WD40 repeat- 97.8 9.4E-05 2E-09 89.4 11.7 240 529-832 81-341 (1081)
298 PF15492 Nbas_N: Neuroblastoma 97.8 0.018 4E-07 64.2 28.4 75 259-335 3-80 (282)
299 PRK11138 outer membrane biogen 97.8 0.015 3.2E-07 70.6 30.4 244 35-334 69-319 (394)
300 COG2706 3-carboxymuconate cycl 97.8 0.026 5.5E-07 64.8 29.3 253 25-330 40-326 (346)
301 PF07433 DUF1513: Protein of u 97.8 0.025 5.4E-07 64.9 29.0 116 531-653 130-256 (305)
302 COG5170 CDC55 Serine/threonine 97.8 0.00036 7.9E-09 77.1 13.7 234 24-294 26-321 (460)
303 PF06433 Me-amine-dh_H: Methyl 97.7 0.016 3.5E-07 67.1 27.3 257 29-335 40-328 (342)
304 KOG1920 IkappaB kinase complex 97.7 0.0006 1.3E-08 87.5 15.9 189 1123-1331 891-1092(1265)
305 PF00400 WD40: WD domain, G-be 97.7 8.9E-05 1.9E-09 58.1 5.7 37 604-641 3-39 (39)
306 KOG4190 Uncharacterized conser 97.6 0.00019 4.1E-09 83.9 9.9 164 17-211 730-907 (1034)
307 PF04053 Coatomer_WDAD: Coatom 97.6 0.055 1.2E-06 66.3 31.2 98 1109-1218 344-442 (443)
308 PF06433 Me-amine-dh_H: Methyl 97.6 0.038 8.3E-07 64.1 27.1 273 44-425 17-326 (342)
309 KOG4714 Nucleoporin [Nuclear s 97.5 0.0023 5E-08 69.8 15.5 73 132-208 34-117 (319)
310 PF08450 SGL: SMP-30/Gluconola 97.5 0.084 1.8E-06 59.6 28.9 204 528-805 11-236 (246)
311 KOG4532 WD40-like repeat conta 97.3 0.02 4.3E-07 63.0 19.4 198 100-331 83-286 (344)
312 KOG1645 RING-finger-containing 97.3 0.0034 7.3E-08 72.2 13.8 95 46-170 175-269 (463)
313 KOG4532 WD40-like repeat conta 97.3 0.02 4.4E-07 62.9 18.7 186 529-786 84-285 (344)
314 KOG4714 Nucleoporin [Nuclear s 97.2 0.0055 1.2E-07 66.9 13.4 69 758-831 182-255 (319)
315 KOG1275 PAB-dependent poly(A) 97.1 0.0061 1.3E-07 76.2 14.9 189 30-281 143-340 (1118)
316 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00035 7.6E-09 85.9 3.5 210 25-315 1102-1319(1516)
317 PF12234 Rav1p_C: RAVE protein 97.0 0.84 1.8E-05 57.8 32.4 140 1117-1263 408-553 (631)
318 KOG2695 WD40 repeat protein [G 97.0 0.0015 3.4E-08 73.5 7.4 141 722-884 229-378 (425)
319 KOG2695 WD40 repeat protein [G 96.9 0.0019 4.2E-08 72.8 7.6 120 29-177 257-386 (425)
320 KOG1920 IkappaB kinase complex 96.9 0.13 2.7E-06 67.1 24.4 156 1110-1269 807-983 (1265)
321 KOG1832 HIV-1 Vpr-binding prot 96.9 0.00074 1.6E-08 83.2 4.3 121 498-651 1098-1221(1516)
322 KOG1275 PAB-dependent poly(A) 96.9 0.012 2.6E-07 73.7 14.2 142 718-880 188-340 (1118)
323 KOG2066 Vacuolar assembly/sort 96.8 0.015 3.2E-07 72.4 14.7 170 586-832 55-235 (846)
324 cd00216 PQQ_DH Dehydrogenases 96.7 0.46 1E-05 59.5 27.2 74 102-177 111-193 (488)
325 KOG2066 Vacuolar assembly/sort 96.7 0.013 2.9E-07 72.7 12.6 139 717-886 49-191 (846)
326 PF11768 DUF3312: Protein of u 96.7 0.36 7.8E-06 59.1 24.3 72 254-329 260-331 (545)
327 KOG3616 Selective LIM binding 96.6 0.02 4.3E-07 69.8 13.0 136 1116-1262 606-743 (1636)
328 PF06977 SdiA-regulated: SdiA- 96.5 0.45 9.7E-06 53.8 22.5 200 77-318 23-241 (248)
329 cd00216 PQQ_DH Dehydrogenases 96.4 1 2.3E-05 56.4 27.3 63 273-335 364-432 (488)
330 KOG2114 Vacuolar assembly/sort 96.4 0.34 7.4E-06 61.2 22.0 203 528-800 34-262 (933)
331 PRK02888 nitrous-oxide reducta 96.3 0.23 5E-06 62.1 20.1 196 29-284 197-405 (635)
332 PF11768 DUF3312: Protein of u 96.2 0.13 2.9E-06 62.8 17.3 93 592-738 238-332 (545)
333 KOG1645 RING-finger-containing 96.2 0.23 4.9E-06 57.8 17.6 81 497-601 189-269 (463)
334 COG3490 Uncharacterized protei 95.9 0.7 1.5E-05 51.9 19.5 242 28-327 71-348 (366)
335 KOG0882 Cyclophilin-related pe 95.9 0.037 8E-07 64.7 10.0 203 557-833 7-234 (558)
336 PF00930 DPPIV_N: Dipeptidyl p 95.9 5.7 0.00012 47.6 30.1 54 110-171 22-75 (353)
337 COG0823 TolB Periplasmic compo 95.8 0.22 4.8E-06 60.8 16.7 137 111-287 218-362 (425)
338 COG3391 Uncharacterized conser 95.7 5 0.00011 48.7 28.2 194 100-330 84-286 (381)
339 smart00320 WD40 WD40 repeats. 95.6 0.025 5.4E-07 41.8 5.1 39 54-117 2-40 (40)
340 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 9.7 0.00021 48.2 31.7 74 101-177 120-199 (527)
341 KOG0882 Cyclophilin-related pe 95.6 0.04 8.6E-07 64.5 8.7 221 23-291 8-239 (558)
342 KOG3616 Selective LIM binding 95.6 0.34 7.5E-06 59.6 16.5 166 1099-1267 1142-1321(1636)
343 PF04841 Vps16_N: Vps16, N-ter 95.6 3.1 6.6E-05 51.0 25.5 53 255-308 218-270 (410)
344 KOG1008 Uncharacterized conser 95.5 0.0089 1.9E-07 72.4 3.4 143 725-883 127-276 (783)
345 KOG2114 Vacuolar assembly/sort 95.5 0.85 1.8E-05 57.9 20.1 201 99-336 33-252 (933)
346 PF08596 Lgl_C: Lethal giant l 95.5 4 8.6E-05 49.6 25.7 230 77-330 3-293 (395)
347 KOG4640 Anaphase-promoting com 95.5 0.042 9.2E-07 66.9 8.7 92 25-144 21-115 (665)
348 PF14583 Pectate_lyase22: Olig 95.4 5.1 0.00011 47.8 25.3 229 27-318 38-303 (386)
349 KOG1008 Uncharacterized conser 95.4 0.0097 2.1E-07 72.1 2.9 154 26-208 58-223 (783)
350 PF04053 Coatomer_WDAD: Coatom 95.2 2.3 5E-05 52.3 22.6 117 1118-1276 324-440 (443)
351 KOG4649 PQQ (pyrrolo-quinoline 95.2 6.7 0.00015 43.7 30.0 135 37-207 25-162 (354)
352 PF03178 CPSF_A: CPSF A subuni 95.1 2.8 6.1E-05 49.3 22.8 182 44-283 2-202 (321)
353 PF00930 DPPIV_N: Dipeptidyl p 95.0 2.7 5.8E-05 50.3 22.2 93 538-642 22-130 (353)
354 PF00780 CNH: CNH domain; Int 95.0 7.2 0.00016 44.6 25.1 100 100-211 6-123 (275)
355 PRK02888 nitrous-oxide reducta 94.8 3.8 8.3E-05 51.6 23.1 237 35-328 140-405 (635)
356 PF06977 SdiA-regulated: SdiA- 94.7 5.2 0.00011 45.3 22.2 210 16-280 15-247 (248)
357 KOG4649 PQQ (pyrrolo-quinoline 94.7 9.1 0.0002 42.8 27.6 101 101-211 23-124 (354)
358 smart00320 WD40 WD40 repeats. 94.6 0.082 1.8E-06 38.8 5.3 30 612-641 11-40 (40)
359 KOG4640 Anaphase-promoting com 94.6 0.14 3E-06 62.7 9.6 93 76-189 21-115 (665)
360 PF14655 RAB3GAP2_N: Rab3 GTPa 94.4 16 0.00036 44.4 28.1 103 29-144 6-118 (415)
361 KOG3621 WD40 repeat-containing 94.3 8 0.00017 48.6 23.7 111 28-168 39-155 (726)
362 PF14783 BBS2_Mid: Ciliary BBS 94.2 1.2 2.5E-05 43.7 13.3 92 529-639 15-110 (111)
363 PF14783 BBS2_Mid: Ciliary BBS 93.8 2.4 5.2E-05 41.6 14.6 94 766-877 16-109 (111)
364 PF15390 DUF4613: Domain of un 93.7 1.4 3.1E-05 54.0 15.4 116 77-208 58-184 (671)
365 PF05694 SBP56: 56kDa selenium 93.6 15 0.00032 44.5 23.5 179 99-293 139-355 (461)
366 PRK13616 lipoprotein LpqB; Pro 93.6 3.7 8.1E-05 52.4 20.2 97 560-664 350-458 (591)
367 TIGR03074 PQQ_membr_DH membran 93.4 12 0.00026 49.3 24.6 63 272-335 411-485 (764)
368 COG3386 Gluconolactonase [Carb 93.4 20 0.00044 42.0 24.6 228 30-318 30-276 (307)
369 COG0823 TolB Periplasmic compo 93.2 2.5 5.5E-05 51.7 17.2 81 553-642 186-267 (425)
370 PF12657 TFIIIC_delta: Transcr 93.1 0.53 1.1E-05 50.3 10.0 86 26-119 6-121 (173)
371 PF02897 Peptidase_S9_N: Proly 92.3 33 0.00072 41.8 25.6 113 27-169 126-262 (414)
372 PF04841 Vps16_N: Vps16, N-ter 92.0 10 0.00023 46.4 20.4 179 112-327 62-246 (410)
373 PF03178 CPSF_A: CPSF A subuni 91.7 21 0.00045 42.1 22.1 178 539-783 2-202 (321)
374 KOG2079 Vacuolar assembly/sort 91.6 0.66 1.4E-05 60.1 9.4 113 758-885 92-206 (1206)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.5 49 0.0011 42.0 36.8 77 101-177 69-148 (527)
376 COG3204 Uncharacterized protei 91.2 16 0.00035 41.8 18.8 180 77-298 87-277 (316)
377 KOG2079 Vacuolar assembly/sort 91.2 0.73 1.6E-05 59.7 9.2 98 101-203 99-198 (1206)
378 PRK13616 lipoprotein LpqB; Pro 91.1 16 0.00035 46.8 21.3 154 136-323 398-564 (591)
379 PF02897 Peptidase_S9_N: Proly 91.1 5 0.00011 49.0 16.5 105 528-634 134-247 (414)
380 PF12894 Apc4_WD40: Anaphase-p 90.5 0.6 1.3E-05 38.5 5.2 33 501-550 11-43 (47)
381 PF12931 Sec16_C: Sec23-bindin 90.5 0.7 1.5E-05 53.6 7.8 77 1185-1262 2-83 (284)
382 COG3386 Gluconolactonase [Carb 90.5 40 0.00087 39.6 22.2 92 528-633 36-130 (307)
383 PF08553 VID27: VID27 cytoplas 90.4 4.2 9E-05 53.1 15.2 141 43-209 503-646 (794)
384 PF08553 VID27: VID27 cytoplas 90.0 1.9 4.2E-05 56.0 11.8 101 37-167 545-647 (794)
385 PF00780 CNH: CNH domain; Int 89.5 43 0.00094 38.1 26.6 101 528-642 6-121 (275)
386 PF12894 Apc4_WD40: Anaphase-p 89.0 0.65 1.4E-05 38.3 4.3 34 136-173 13-46 (47)
387 KOG4441 Proteins containing BT 88.9 21 0.00045 45.7 19.9 107 528-642 284-403 (571)
388 KOG3621 WD40 repeat-containing 88.6 2 4.4E-05 53.6 9.9 114 758-883 38-155 (726)
389 PF04097 Nic96: Nup93/Nic96; 86.9 2.7 5.8E-05 54.1 10.3 140 1119-1263 265-452 (613)
390 KOG2280 Vacuolar assembly/sort 86.2 9 0.00019 48.6 13.5 112 1116-1229 688-808 (829)
391 KOG2444 WD40 repeat protein [G 85.9 1.9 4.2E-05 47.3 6.8 100 717-831 70-178 (238)
392 PF12234 Rav1p_C: RAVE protein 85.5 7.8 0.00017 49.4 12.9 123 12-165 19-154 (631)
393 PHA02713 hypothetical protein; 84.6 59 0.0013 41.6 20.6 66 760-833 459-536 (557)
394 PF14870 PSII_BNR: Photosynthe 84.2 26 0.00057 40.9 15.6 159 11-207 135-301 (302)
395 PF08596 Lgl_C: Lethal giant l 84.0 13 0.00028 45.2 13.7 83 792-882 84-173 (395)
396 PF10647 Gmad1: Lipoprotein Lp 83.8 44 0.00096 38.0 17.2 150 17-198 14-183 (253)
397 PF08728 CRT10: CRT10; InterP 83.5 31 0.00066 44.7 16.9 176 17-209 33-245 (717)
398 KOG2444 WD40 repeat protein [G 83.3 1.7 3.7E-05 47.6 5.1 96 529-642 70-176 (238)
399 PHA02713 hypothetical protein; 82.7 33 0.00072 43.8 17.2 28 759-786 507-536 (557)
400 PF14781 BBS2_N: Ciliary BBSom 82.4 38 0.00081 34.6 13.7 115 37-177 13-135 (136)
401 PHA03098 kelch-like protein; P 81.8 54 0.0012 41.5 18.8 105 529-642 295-413 (534)
402 KOG2395 Protein involved in va 81.3 16 0.00035 44.6 12.4 98 721-830 398-500 (644)
403 COG5290 IkappaB kinase complex 81.0 7.3 0.00016 49.3 9.7 107 1166-1275 923-1032(1243)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 79.9 16 0.00034 44.6 12.2 74 98-176 316-407 (415)
405 PF14781 BBS2_N: Ciliary BBSom 79.7 25 0.00054 35.8 11.4 105 101-211 10-126 (136)
406 KOG4441 Proteins containing BT 79.7 1.3E+02 0.0029 38.6 21.0 103 717-833 381-502 (571)
407 COG3391 Uncharacterized conser 79.4 1.5E+02 0.0034 35.8 23.7 201 28-292 77-292 (381)
408 PLN00033 photosystem II stabil 78.3 95 0.0021 37.9 18.2 143 28-207 242-396 (398)
409 COG3204 Uncharacterized protei 77.4 1.1E+02 0.0023 35.5 16.7 162 23-212 84-265 (316)
410 PF10313 DUF2415: Uncharacteri 72.9 8.9 0.00019 31.1 5.0 34 795-831 1-34 (43)
411 PF10313 DUF2415: Uncharacteri 72.8 8.8 0.00019 31.1 4.9 34 77-121 2-35 (43)
412 PLN03081 pentatricopeptide (PP 72.8 29 0.00063 45.6 13.0 94 1116-1215 193-314 (697)
413 TIGR02604 Piru_Ver_Nterm putat 72.4 88 0.0019 37.7 16.0 18 136-156 125-142 (367)
414 PF07569 Hira: TUP1-like enhan 71.2 20 0.00043 40.0 9.3 67 758-831 15-96 (219)
415 PF14727 PHTB1_N: PTHB1 N-term 69.7 2.8E+02 0.006 34.2 26.7 103 100-208 36-161 (418)
416 PLN03081 pentatricopeptide (PP 68.8 30 0.00064 45.5 11.8 138 1116-1264 395-554 (697)
417 COG3490 Uncharacterized protei 68.8 1.2E+02 0.0025 35.0 14.2 104 528-631 124-243 (366)
418 PF10168 Nup88: Nuclear pore c 68.3 75 0.0016 41.7 14.8 71 99-169 94-181 (717)
419 PHA03098 kelch-like protein; P 67.0 2.5E+02 0.0054 35.5 19.3 55 727-787 406-468 (534)
420 PF10647 Gmad1: Lipoprotein Lp 66.9 2.3E+02 0.005 32.2 22.0 109 77-207 25-141 (253)
421 KOG2395 Protein involved in va 66.2 59 0.0013 40.1 12.0 140 43-210 355-500 (644)
422 PF10214 Rrn6: RNA polymerase 65.1 4.6E+02 0.01 35.0 23.2 172 136-328 81-277 (765)
423 PF05935 Arylsulfotrans: Aryls 64.0 77 0.0017 39.7 13.5 153 30-208 153-365 (477)
424 TIGR03074 PQQ_membr_DH membran 63.8 4.8E+02 0.01 34.8 25.1 62 587-652 411-485 (764)
425 PF14870 PSII_BNR: Photosynthe 62.6 1.3E+02 0.0027 35.4 13.9 107 756-876 145-255 (302)
426 COG2956 Predicted N-acetylgluc 62.5 1.2E+02 0.0026 35.6 13.0 16 1248-1263 224-239 (389)
427 PRK13684 Ycf48-like protein; P 62.4 3.1E+02 0.0068 32.6 17.7 149 26-208 174-329 (334)
428 PF14938 SNAP: Soluble NSF att 62.4 21 0.00045 41.3 7.6 22 1242-1263 159-180 (282)
429 KOG1916 Nuclear protein, conta 62.2 3.2 6.9E-05 53.1 0.8 141 44-207 153-299 (1283)
430 PF05096 Glu_cyclase_2: Glutam 61.5 3E+02 0.0065 31.6 24.7 200 55-316 34-249 (264)
431 PRK10115 protease 2; Provision 60.7 5.2E+02 0.011 34.1 29.5 109 528-642 137-254 (686)
432 PF14583 Pectate_lyase22: Olig 60.3 3.8E+02 0.0083 32.5 26.9 114 530-647 93-226 (386)
433 PF11715 Nup160: Nucleoporin N 59.6 39 0.00084 43.0 10.0 73 263-335 156-256 (547)
434 PHA02790 Kelch-like protein; P 59.4 3.3E+02 0.0071 34.2 17.9 102 529-642 272-383 (480)
435 KOG4460 Nuclear pore complex, 57.3 1.7E+02 0.0037 36.2 13.6 131 40-177 57-208 (741)
436 PF14761 HPS3_N: Hermansky-Pud 57.3 1.4E+02 0.003 33.1 12.0 55 262-319 24-81 (215)
437 PRK15174 Vi polysaccharide exp 57.0 1.8E+02 0.0038 38.2 15.5 31 1116-1146 148-181 (656)
438 KOG4499 Ca2+-binding protein R 56.6 2.1E+02 0.0045 32.1 13.0 142 27-189 111-263 (310)
439 PRK14720 transcript cleavage f 56.6 83 0.0018 42.2 12.2 145 1110-1270 29-188 (906)
440 KOG4499 Ca2+-binding protein R 56.5 3.3E+02 0.0072 30.6 19.1 41 763-803 221-262 (310)
441 KOG1840 Kinesin light chain [C 56.4 4.1E+02 0.009 33.5 17.6 146 1095-1248 221-390 (508)
442 PF11715 Nup160: Nucleoporin N 55.0 42 0.00091 42.7 9.2 77 101-177 158-258 (547)
443 PF09295 ChAPs: ChAPs (Chs5p-A 55.0 1E+02 0.0023 37.5 11.9 53 1198-1263 241-293 (395)
444 KOG3036 Protein involved in ce 54.8 2E+02 0.0042 32.6 12.6 141 1110-1289 136-290 (293)
445 PF15390 DUF4613: Domain of un 54.8 72 0.0016 40.0 10.3 112 27-166 59-185 (671)
446 TIGR03118 PEPCTERM_chp_1 conse 54.7 4.1E+02 0.009 31.1 23.6 131 27-167 25-170 (336)
447 KOG4460 Nuclear pore complex, 53.7 2.5E+02 0.0053 34.9 14.2 38 255-292 167-207 (741)
448 PRK11788 tetratricopeptide rep 52.7 2.7E+02 0.0058 33.3 15.3 29 1114-1142 143-174 (389)
449 PRK11788 tetratricopeptide rep 52.5 2.4E+02 0.0051 33.7 14.8 144 1114-1263 109-274 (389)
450 PF12768 Rax2: Cortical protei 52.5 1.3E+02 0.0027 35.0 11.6 79 112-198 17-107 (281)
451 KOG0553 TPR repeat-containing 50.2 76 0.0016 36.7 9.0 93 1122-1221 91-199 (304)
452 PF07995 GSDH: Glucose / Sorbo 48.9 1.9E+02 0.0042 34.3 12.9 52 77-145 3-59 (331)
453 TIGR02276 beta_rpt_yvtn 40-res 46.8 59 0.0013 25.2 5.6 31 263-293 1-32 (42)
454 PF07569 Hira: TUP1-like enhan 46.3 95 0.0021 34.6 9.1 57 150-208 23-93 (219)
455 PF14938 SNAP: Soluble NSF att 45.8 1.2E+02 0.0026 35.1 10.3 45 1242-1286 200-254 (282)
456 PRK15179 Vi polysaccharide bio 44.9 5.1E+02 0.011 34.2 16.6 125 1112-1251 86-214 (694)
457 PF05096 Glu_cyclase_2: Glutam 43.5 5.6E+02 0.012 29.4 15.3 112 29-174 49-164 (264)
458 KOG2280 Vacuolar assembly/sort 43.2 1.1E+02 0.0024 39.4 9.7 80 1175-1263 725-808 (829)
459 PF14269 Arylsulfotran_2: Aryl 42.9 3.1E+02 0.0068 32.1 13.1 39 27-65 146-186 (299)
460 PF12768 Rax2: Cortical protei 42.7 6E+02 0.013 29.5 15.7 96 44-167 16-123 (281)
461 PF12569 NARP1: NMDA receptor- 42.5 1.9E+02 0.0041 36.7 11.8 46 1110-1155 36-84 (517)
462 smart00299 CLH Clathrin heavy 42.0 3.8E+02 0.0082 27.0 13.1 22 1194-1215 72-93 (140)
463 TIGR02917 PEP_TPR_lipo putativ 41.7 3.6E+02 0.0079 35.6 15.4 27 1113-1139 91-117 (899)
464 PLN03077 Protein ECB2; Provisi 41.5 3.6E+02 0.0078 36.5 15.3 95 1186-1280 532-670 (857)
465 PLN00033 photosystem II stabil 41.3 7.5E+02 0.016 30.3 17.7 63 757-827 329-396 (398)
466 COG4008 Predicted metal-bindin 41.2 58 0.0013 32.3 5.4 69 1185-1264 69-151 (153)
467 KOG3060 Uncharacterized conser 41.1 81 0.0018 35.7 7.2 120 1103-1235 76-199 (289)
468 PF07676 PD40: WD40-like Beta 40.8 60 0.0013 25.1 4.7 19 256-274 11-29 (39)
469 TIGR00990 3a0801s09 mitochondr 40.4 5.2E+02 0.011 33.4 16.0 27 1117-1143 370-399 (615)
470 PLN03218 maturation of RBCL 1; 40.3 2.3E+02 0.0049 39.3 12.9 22 1244-1265 725-746 (1060)
471 KOG1585 Protein required for f 39.5 76 0.0017 35.7 6.7 27 1189-1215 69-95 (308)
472 PF08728 CRT10: CRT10; InterP 39.4 2.6E+02 0.0056 36.6 12.3 111 764-882 113-246 (717)
473 PF12688 TPR_5: Tetratrico pep 39.4 2.6E+02 0.0056 28.1 10.1 17 1117-1133 6-22 (120)
474 smart00564 PQQ beta-propeller 39.4 54 0.0012 24.1 4.1 25 151-175 8-32 (33)
475 PF10168 Nup88: Nuclear pore c 39.3 1.4E+02 0.003 39.4 10.2 90 17-120 77-180 (717)
476 PRK11447 cellulose synthase su 39.1 3E+02 0.0066 38.6 14.4 100 1112-1217 62-173 (1157)
477 PRK11447 cellulose synthase su 38.5 3.2E+02 0.0068 38.5 14.4 30 1116-1145 465-497 (1157)
478 KOG2076 RNA polymerase III tra 38.0 1.5E+02 0.0032 39.1 9.8 79 1170-1250 144-232 (895)
479 smart00299 CLH Clathrin heavy 37.2 3.7E+02 0.0081 27.0 11.3 35 1182-1216 86-121 (140)
480 KOG1125 TPR repeat-containing 37.2 4.3E+02 0.0093 33.4 13.1 125 1109-1249 350-488 (579)
481 TIGR03606 non_repeat_PQQ dehyd 37.0 6.2E+02 0.013 31.6 14.8 54 78-146 32-90 (454)
482 PF12657 TFIIIC_delta: Transcr 36.9 1.7E+02 0.0037 31.1 9.0 36 848-883 87-122 (173)
483 KOG2377 Uncharacterized conser 36.5 3.3E+02 0.0072 33.3 11.6 76 792-882 64-140 (657)
484 KOG1585 Protein required for f 36.3 1.7E+02 0.0036 33.1 8.6 76 1169-1251 75-156 (308)
485 KOG0985 Vesicle coat protein c 36.3 4.5E+02 0.0098 35.4 13.4 119 1168-1287 1197-1341(1666)
486 PF07995 GSDH: Glucose / Sorbo 35.6 5.4E+02 0.012 30.5 13.8 112 503-634 3-134 (331)
487 TIGR02917 PEP_TPR_lipo putativ 35.3 5.2E+02 0.011 34.1 15.4 21 1243-1263 164-184 (899)
488 PRK13684 Ycf48-like protein; P 35.1 8.3E+02 0.018 29.0 16.8 105 502-637 173-282 (334)
489 PF13429 TPR_15: Tetratricopep 35.0 42 0.00092 38.5 4.3 140 1116-1263 12-171 (280)
490 PLN03218 maturation of RBCL 1; 34.7 3.1E+02 0.0066 38.1 12.8 23 1243-1265 689-711 (1060)
491 TIGR02604 Piru_Ver_Nterm putat 34.4 8.8E+02 0.019 29.1 16.7 58 256-316 126-202 (367)
492 PF03088 Str_synth: Strictosid 34.1 77 0.0017 30.1 5.0 39 589-631 36-74 (89)
493 COG5167 VID27 Protein involved 33.8 1.9E+02 0.0041 35.7 9.2 101 38-167 531-632 (776)
494 PF01011 PQQ: PQQ enzyme repea 33.5 87 0.0019 24.3 4.5 25 153-177 4-28 (38)
495 PF14727 PHTB1_N: PTHB1 N-term 33.5 1E+03 0.022 29.4 18.7 152 150-326 38-203 (418)
496 PF10214 Rrn6: RNA polymerase 33.4 1.3E+03 0.029 30.8 24.0 171 74-285 78-278 (765)
497 PF04840 Vps16_C: Vps16, C-ter 33.0 3.1E+02 0.0067 32.5 11.1 108 1117-1227 182-298 (319)
498 KOG0985 Vesicle coat protein c 32.6 1.2E+03 0.026 31.9 16.1 124 1182-1325 1137-1291(1666)
499 PF13570 PQQ_3: PQQ-like domai 32.4 1E+02 0.0023 24.0 4.9 38 169-209 1-38 (40)
500 PF09205 DUF1955: Domain of un 32.0 3.3E+02 0.0072 28.0 9.1 133 1119-1263 9-145 (161)
No 1
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-140 Score=1215.89 Aligned_cols=1031 Identities=44% Similarity=0.650 Sum_probs=852.8
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCC
Q 000703 8 PADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1342)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1342)
+.+.|+| ||||++|+.|.+++||+|+||||||+++.|.|+|.++.|.+++++.|+. .|+.|+|+|..
T Consensus 1 ~~~~s~~--tlpG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s-----------~V~~VrWap~~ 67 (1062)
T KOG1912|consen 1 NFKVSDH--TLPGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQS-----------AVTSVRWAPAP 67 (1062)
T ss_pred CCccccc--cCCCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhccccCcc-----------ceeEEEeccCC
Confidence 3578999 9999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCC-cEEEEEeCCCeEEEEEC
Q 000703 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAINGPSVLSLYNT 166 (1342)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~s~d~~i~lWd~ 166 (1342)
++++++| ++....+||+++..|+|+|||+..+..+.++ ..|.+ +|++++|.|..+++ ++|++.++.++|.+||+
T Consensus 68 ~p~~llS--~~~~~lliAsaD~~GrIil~d~~~~s~~~~l--~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt 142 (1062)
T KOG1912|consen 68 SPRDLLS--PSSSQLLIASADISGRIILVDFVLASVINWL--SHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT 142 (1062)
T ss_pred CchhccC--ccccceeEEeccccCcEEEEEehhhhhhhhh--cCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence 9999988 3357899999999999999999999999986 44566 99999999999888 89999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhcc-ccCCC
Q 000703 167 TSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSA-GAASL 245 (1342)
Q Consensus 167 ~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~-~s~~~ 245 (1342)
.||+++|++++.++.+.|++|||||++++++.+.+|++++.++.+..+.+..+|+++|.++..++.++++.-.. .+-..
T Consensus 143 dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 143 DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 99999999999999999999999999999999999999999999988888889999999887788877764211 11112
Q ss_pred CCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000703 246 SPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1342)
Q Consensus 246 ~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1342)
.|+...++.+|.+++|+|.+|++++..+++++.|+|++..+++++++++|++++|++++++|+++.|||+|.||.+.||.
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC----------------CceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCC
Q 000703 326 RKE----------------GEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSP 389 (1342)
Q Consensus 326 ~~~----------------g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~ 389 (1342)
++. |+|++.+|.+++.||.
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~--------------------------------------------- 337 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV--------------------------------------------- 337 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhcccc---------------------------------------------
Confidence 986 5556666665555553
Q ss_pred CcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeecccccccc
Q 000703 390 FEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEH 469 (1342)
Q Consensus 390 ~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~ 469 (1342)
...+||.+++ .++..-++|++.+|++.+++... ....+..+.+.++.|++.+.. ..
T Consensus 338 -~~~~cPs~~s--a~avl~s~g~~~~w~l~~~ri~~----~~~s~~iel~~pf~f~~~~~~-v~---------------- 393 (1062)
T KOG1912|consen 338 -IGASCPSTPS--ALAVLYSSGDSTFWQLSNGRIHL----DYRSSSIELVLPFDFNLSTKL-VG---------------- 393 (1062)
T ss_pred -eeecCCCChh--hhhhhhhcchhHHHhhhcCCcCc----ccccccccccccccccCceee-hh----------------
Confidence 3344555444 77788899999999999876533 344667788899999887521 10
Q ss_pred ccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCC-Ccc-cccccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000703 470 VNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSP-SLT-ATLARGGNYPAVAVPLVALGTQSGAVDVVDVS 547 (1342)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp-~~~-~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~ 547 (1342)
..++....+..+|+++.++..+.|. .++ .++.-|+|+++...+++|+|++.|||.|+|+.
T Consensus 394 ------------------k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 394 ------------------KTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred ------------------hccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEec
Confidence 0001111122368888888887653 122 12223889999999999999999999999999
Q ss_pred CCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCE
Q 000703 548 ANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRY 627 (1342)
Q Consensus 548 tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~ 627 (1342)
++.+.+.|..|++.|++++|.+..++++++++.++.++|+++|++.|.|++||..+.||.++++++.||++|+.|..|+|
T Consensus 456 t~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~y 535 (1062)
T KOG1912|consen 456 TNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRY 535 (1062)
T ss_pred chhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCce
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCEEEEeccCCcceeeecc--Cc-eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCC
Q 000703 628 LLILFRDAPVEVWAMTKNPIMLRSLA--LP-FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDS 704 (1342)
Q Consensus 628 Las~s~D~tIkvWDl~kt~~~l~~l~--~~-vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 704 (1342)
|++.++|.++++||+ ++..+++.+. .| |+.++|+.+..+...+....|| +++..
T Consensus 536 Lai~Fr~~plEiwd~-kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q---~sms~------------------- 592 (1062)
T KOG1912|consen 536 LAILFRREPLEIWDL-KTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ---SSMSE------------------- 592 (1062)
T ss_pred EEEEecccchHHHhh-ccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh---hhhhh-------------------
Confidence 999999999999999 8888887765 46 8999999544433222111111 11111
Q ss_pred cCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccC---CCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEE
Q 000703 705 KDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFR---PKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWD 781 (1342)
Q Consensus 705 ~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~---~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWD 781 (1342)
+..+..+.|..++.....+....|.. ..|.. | ...+.+|||++++||.|+.+|++++||
T Consensus 593 -------------n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~es--f---afal~~mAwk~d~lv~GD~~GNl~~WD 654 (1062)
T KOG1912|consen 593 -------------NLVVLDSVESRIYHITLSALVVSDGSQVNTAWES--F---AFALCAMAWKDDILVVGDVEGNLVVWD 654 (1062)
T ss_pred -------------ceeeeccccchheehhhhhhhhccccchhhHHHH--H---HHHHHhhhccCCeeEeecccCceeEEe
Confidence 11222222333322222222222210 01111 1 123567999999999999999999999
Q ss_pred CCCCceee---eccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCC
Q 000703 782 VTTGHSSQ---FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTR 858 (1342)
Q Consensus 782 l~tg~~~~---l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~ 858 (1342)
+..++.+. .+.|..++....+-|+. +.+++...|+ +.+||.+.-
T Consensus 655 lg~R~SRg~~d~p~~ra~~l~~~~ipG~------~~~lvl~~d~-~~lwdtk~~-------------------------- 701 (1062)
T KOG1912|consen 655 LGRRQSRGVRDSPDPRAHSLTFPQIPGD------HTTLVLELDW-LPLWDTKAD-------------------------- 701 (1062)
T ss_pred cccccccCccCCCCchhhheecccCCCC------ceEEEEecCc-ceecccccc--------------------------
Confidence 98776665 67777777777777762 3566776676 777774331
Q ss_pred CCCCCCeEEEEEeCCCcEEEEEccCCccccccccccccccccccCCCcccceecccchHHHHHHHHHhCCCCCccccccC
Q 000703 859 TDKNDPLVLCIAGADSSFRLIEVNTSEKKIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCST 938 (1342)
Q Consensus 859 ~~~g~~~~L~s~s~DgtIrvWdi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~ 938 (1342)
++++..+|.|++.|+.|+...+....+.++ ..+++|+.||.++|.++|..|++ ++|+|| +++
T Consensus 702 -----~lV~siag~dssfrlldvdlc~~~~~~l~~--d~~~Rf~~m~mks~~ll~~e~~l---------vkPsWf--sst 763 (1062)
T KOG1912|consen 702 -----TLVLSIAGMDSSFRLLDVDLCEKSPLVLPN--DNKERFRVMPMKSPPLLPKEHAL---------VKPSWF--SST 763 (1062)
T ss_pred -----eeeeeeccCCcceEEEEEEecccCceecCC--CCceeEEeccccCCccccCcccc---------cccccc--ccc
Confidence 223445788999999999877776554433 33889999999999999999977 899999 677
Q ss_pred CccCCCCCCCCCCCChhhhhhhhccCCCCCCccchhHHHhhcccccccccccchHHHHHHHHHhccchhHHHHHHHHHcC
Q 000703 939 TIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFG 1018 (1342)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~fg 1018 (1342)
-..++++.++|...+..++|+|++++||.++..++|+.++.+|+||. ++|++++++|++.+. .++||+|||+|||
T Consensus 764 l~~k~s~~i~~~~l~~~~~r~ysid~s~~d~pe~~em~~~i~e~~~s---l~~Dek~~ll~~~~~--~lqR~~~var~~G 838 (1062)
T KOG1912|consen 764 LYKKRSHNIVGKHLSSKDLRSYSIDRSPADDPEVSEMELKILEPYRS---LLDDEKAKLLEADVS--KLQRFAFVARFFG 838 (1062)
T ss_pred eeccccccchhhhccCCccccccccCCCCCCcccHHHHHHHHHHHhh---hCcHHHHHHhHHHHH--HHHHHHHHHHHhc
Confidence 78889999999999999999999999999999999999999999999 689999999999875 8999999999999
Q ss_pred CchHHHHHhhhHHHHHHHHHhcc-CCCCCCCCCCCCchhhhhhhhhhccCCCCCCCCCcCCccchhhhhhcccchHHHHH
Q 000703 1019 ETSEALFWLQLPRALNHLMRKLK-RSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWE 1097 (1342)
Q Consensus 1019 ~~~~~~fw~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1097 (1342)
|..|+.||++ |++|++++.. +++++.. ++. +++.++|.+.|.++ +++. +|+.++++
T Consensus 839 d~sea~fw~~---ai~h~~hslt~~~a~~~e--A~~--------~~~p~~~lsspe~r--------~idv-mc~~~~~~- 895 (1062)
T KOG1912|consen 839 DTSEALFWLI---AIDHFAHSLTEHSAPKLE--AQK--------SKWPSGGLSSPESR--------KIDV-MCAAEQAM- 895 (1062)
T ss_pred cchHHHHHHH---HHHHHHHHhhhhcccccc--cch--------hcCcCCCCCCcchh--------hhhh-HhhHHHHH-
Confidence 9999999996 8888988888 6665542 222 24545566665543 4444 55544441
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 000703 1098 TAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR 1177 (1342)
Q Consensus 1098 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~ 1177 (1342)
.+||+++++.+|+.++||++||++.||+++ ++||||+|++++|.++.|++||+||+|||+
T Consensus 896 -----------------~~k~v~qlv~vG~~~~aV~llL~~saD~~y---~slkA~ll~s~~s~~~~~s~iKlvAtNmia 955 (1062)
T KOG1912|consen 896 -----------------ERKLVEQLVVVGSAKEAVTLLLIVSADLRY---ASLKAALLVSCQSNEKAKSLIKLVATNMIA 955 (1062)
T ss_pred -----------------HHHHHHHHhhhccHHHHhhhhhhhccCCch---HHHHhhheeeeccCchHHHHHHHHHHhhhc
Confidence 148999999999999999999999999866 999999999999999999999999999999
Q ss_pred hcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccH-HHHHHHHHHhCCHHH
Q 000703 1178 NDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNI-WRALILYVAAGGLQE 1256 (1342)
Q Consensus 1178 ~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~a~~~~~~~g~~~~ 1256 (1342)
.|++++||++||++|+..|||+|||++|+|.+|++|||++|+++| +|..||..||+...+++ -.|.+..++.+|+.+
T Consensus 956 ~d~~~~Gv~LLclvg~~~dAC~yLQ~~g~Wt~aa~lAk~~L~~~~--~v~srwi~hl~~~~~~~~~~a~ls~~s~~c~~~ 1033 (1062)
T KOG1912|consen 956 SDLIEDGVELLCLVGAGGDACKYLQSQGLWTKAAVLAKMGLDDPT--EVESRWIGHLADEAKQIRVLAELSRRSWPCVVE 1033 (1062)
T ss_pred ccccccceeEEEEeccchHHHHHHHhccchhHHHHHHHhcCCChH--HHHHHHHHHhhhHHHhHHHHHHHHHhcccchhh
Confidence 999999999999999999999999999999999999999998886 99999999999999988 788888889999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhhhhcc
Q 000703 1257 ALAALREAQHPDTAAMFVLACREIYAEIITN 1287 (1342)
Q Consensus 1257 ~~~~l~~~~~~~~aa~~~~~~~e~~~~~~~~ 1287 (1342)
|++ ++++++|++|||++||.+++.+.+++
T Consensus 1034 ~a~--~~~~~~dr~alfv~ac~~~~s~~~Te 1062 (1062)
T KOG1912|consen 1034 AAS--SADAILDRLALFVTACTPPLSSCPTE 1062 (1062)
T ss_pred hhh--hhhhhhhHHHHHhhhccCccccCCCC
Confidence 999 99999999999999999999988763
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-48 Score=436.76 Aligned_cols=567 Identities=15% Similarity=0.195 Sum_probs=429.1
Q ss_pred ceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 29 SADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
-+--.|.| .|+|+++++|.+.+..++.....+.+|.. .||..+|||. |.++|||
T Consensus 23 ~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~-----------~vtVAkySPs--------------G~yiASG 77 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAH-----------QVTVAKYSPS--------------GFYIASG 77 (603)
T ss_pred EeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccc-----------eeEEEEeCCC--------------ceEEeec
Confidence 34556777 89999999999999999999999999986 9999999986 5689999
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCC---CeEEEEECCCCeEEEEEeCCCCceEE
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP---SVLSLYNTTSASCMWKYDASPEYLSC 184 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d---~~i~lWd~~tg~~i~~~~~~~~~v~~ 184 (1342)
+..|+|||||....+.+..-+++--.+ +|.+|+|+.++. ++.|++-+. +.+.+|| +|+.+..+++|...+++
T Consensus 78 D~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd~ds~--RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWDFDSK--RIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINS 152 (603)
T ss_pred CCcCcEEEEeccCcceeeeeeeeeccc-ccccceeCCCCc--EEEEEecCccceeEEEEec--CCCccceeeccceeEee
Confidence 999999999986655444334455556 999999999872 555555332 4566777 57888899999999999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC
Q 000703 185 IRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH 264 (1342)
Q Consensus 185 v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpd 264 (1342)
+.|-|-.+-++++++.|++|-+++- | ..+|..+ ...|...|.++.||||
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeG----P----PFKFk~s-----------------------~r~HskFV~~VRysPD 201 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEG----P----PFKFKSS-----------------------FREHSKFVNCVRYSPD 201 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeC----C----Ceeeeec-----------------------ccccccceeeEEECCC
Confidence 9999999999999999999999752 1 2333211 0123346888899999
Q ss_pred CCceEEEEcCCeEEEEEccCCceeEEEec-CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccc
Q 000703 265 WRHIIFVTFPRELVVFDLQYETPLFSAAL-PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIP 343 (1342)
Q Consensus 265 g~~ll~~~~d~~I~iwDl~t~~~l~~~~l-~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~ 343 (1342)
|...++++.|++|.|||.++|+.++.+.- +.+.+.+..+.++||+..+++++.|.+++|||+.+...+.++. +..
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~-~~~--- 277 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP-MGS--- 277 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee-cCC---
Confidence 99999999999999999999999998862 3456778899999999999999999999999999888776662 111
Q ss_pred cccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccc
Q 000703 344 SIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGA 423 (1342)
Q Consensus 344 ~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~ 423 (1342)
+ +. ...--.+++ +.+|+++|.+|+|.+.+......
T Consensus 278 ---~-v~--dqqvG~lWq---------------------------------------kd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 278 ---T-VE--DQQVGCLWQ---------------------------------------KDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred ---c-hh--ceEEEEEEe---------------------------------------CCeEEEEEcCcEEEEecccCCCh
Confidence 0 00 001111121 34899999999999887654321
Q ss_pred cccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcc
Q 000703 424 GDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSST 503 (1342)
Q Consensus 424 ~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~ 503 (1342)
+ . .+.||...
T Consensus 313 ~-------------------------~---------------------------------------------~i~GHnK~ 322 (603)
T KOG0318|consen 313 L-------------------------K---------------------------------------------VISGHNKS 322 (603)
T ss_pred h-------------------------h---------------------------------------------eecccccc
Confidence 0 0 24578999
Q ss_pred eEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-eecCCCeEEEEEcCCCcEEEEecCCcc
Q 000703 504 VTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYSQVN 582 (1342)
Q Consensus 504 vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l-~gH~~~V~~l~fs~d~~llS~s~d~~~ 582 (1342)
||++.++| +++.|.+|+.||.|.-||..+|..-+.. .+|+..|.+++-+..+.+++.+.|
T Consensus 323 ITaLtv~~----------------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D--- 383 (603)
T KOG0318|consen 323 ITALTVSP----------------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD--- 383 (603)
T ss_pred eeEEEEcC----------------CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC---
Confidence 99999998 5799999999999999999998765544 789999999998887888887765
Q ss_pred cccCcccCEEEEEEcCCCce-eeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc--CceEEE
Q 000703 583 EKSGGYINRLVVTCLRSGIN-RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPFTVL 659 (1342)
Q Consensus 583 ~~sg~~~~~i~lwD~~tG~~-~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--~~vt~l 659 (1342)
+++++.++..+.. +... .+- ..+| .+++..++|.+++.+..+.-+-+=|. + .+.+.+ -...++
T Consensus 384 -------d~l~~~~~~~~~~t~~~~-~~l-g~QP-~~lav~~d~~~avv~~~~~iv~l~~~--~--~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 384 -------DTLRVISLKDNGYTKSEV-VKL-GSQP-KGLAVLSDGGTAVVACISDIVLLQDQ--T--KVSSIPIGYESSAV 449 (603)
T ss_pred -------CeEEEEecccCcccccce-eec-CCCc-eeEEEcCCCCEEEEEecCcEEEEecC--C--cceeeccccccceE
Confidence 4899988754321 1110 111 1234 48999999888777766554444333 1 111111 122345
Q ss_pred EEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCee
Q 000703 660 EWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRI 739 (1342)
Q Consensus 660 ~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v 739 (1342)
+.+|+ +..+|+|+.||.|++|.+.|..+
T Consensus 450 Av~~~----------------------------------------------------~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 450 AVSPD----------------------------------------------------GSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred EEcCC----------------------------------------------------CCEEEEecccceEEEEEecCCcc
Confidence 55433 45689999999999999988654
Q ss_pred eccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee--eeccccccEEEEEEecCCCCCCCCCEE
Q 000703 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS--QFSTHREGIRRIKFSPVVPGDRSRGRI 815 (1342)
Q Consensus 740 ~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~--~l~~H~~~V~~v~fSPd~~g~~~~~~L 815 (1342)
.+.. .+..|.+.|++|+| |+.+||+|+..+.+.+||+.+++.+ .+.=|++.|.+|+|||+ + .++
T Consensus 478 ~ee~------~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~--n----~~v 545 (603)
T KOG0318|consen 478 KEEA------KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN--N----KLV 545 (603)
T ss_pred ccee------eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC--c----eEE
Confidence 3211 12357788999999 9999999999999999999998753 35569999999999999 4 789
Q ss_pred EEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 816 AVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 816 as~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
|+++.|.+|.||+++.+... ....-.|.. .|..+.|..+ . .|+|+|.|.+||+|.+.
T Consensus 546 ATGSlDt~Viiysv~kP~~~-i~iknAH~~--gVn~v~wlde-----~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 546 ATGSLDTNVIIYSVKKPAKH-IIIKNAHLG--GVNSVAWLDE-----S--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccceEEEEEccChhhh-eEecccccc--CceeEEEecC-----c--eEEeccCcceeEEeccc
Confidence 99999999999999988644 233345553 3999999975 4 47899999999999875
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-47 Score=443.97 Aligned_cols=570 Identities=13% Similarity=0.163 Sum_probs=434.7
Q ss_pred CceEeCCCC-eEEEEcCCeEEEEeCCCccee-EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 28 GSADLSPSG-LLAFASGSSISILDSRSLQLI-STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 28 ~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~-~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
+-++||++| .|++.+++.|.+.|..+++.. .... ... ...+++++.+|| +.+|.
T Consensus 23 G~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~-~ed---------~d~ita~~l~~d--------------~~~L~ 78 (775)
T KOG0319|consen 23 GPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGS-NED---------EDEITALALTPD--------------EEVLV 78 (775)
T ss_pred CceeECCCCCEEEEecCceEEEEEccCCceecccCC-ccc---------hhhhheeeecCC--------------ccEEE
Confidence 459999999 888889999999999999884 2222 111 137999999876 57899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000703 106 AADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCI 185 (1342)
Q Consensus 106 Sg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v 185 (1342)
++++.+.+++|++.+|++++.+. ..|++ ||--++|.|.+ .+||+++.|+.+++||...+.+++.+.+|++.|.++
T Consensus 79 ~a~rs~llrv~~L~tgk~irswK-a~He~-Pvi~ma~~~~g---~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 79 TASRSQLLRVWSLPTGKLIRSWK-AIHEA-PVITMAFDPTG---TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred EeeccceEEEEEcccchHhHhHh-hccCC-CeEEEEEcCCC---ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 99999999999999999888752 24888 99999999987 899999999999999999999999999999999999
Q ss_pred EecCCCCC--EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc
Q 000703 186 RRNPFDAR--HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP 263 (1342)
Q Consensus 186 ~fsP~d~~--~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSp 263 (1342)
.|.| +.. .|+++..|+.+++||..... +.+..+..| .+.+.+++|++
T Consensus 154 ~F~~-~~~~~lL~sg~~D~~v~vwnl~~~~---------------tcl~~~~~H---------------~S~vtsL~~~~ 202 (775)
T KOG0319|consen 154 LFHP-HWNRWLLASGATDGTVRVWNLNDKR---------------TCLHTMILH---------------KSAVTSLAFSE 202 (775)
T ss_pred EeCC-ccchhheeecCCCceEEEEEcccCc---------------hHHHHHHhh---------------hhheeeeeecc
Confidence 9999 443 46888889999999875321 123334333 33588999999
Q ss_pred CCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCC-----CCEEEEEeCCCcEEEEEccCCceeeeEeec
Q 000703 264 HWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN-----NDLLYCAHLDGKLSIWRRKEGEQVHVMCTM 338 (1342)
Q Consensus 264 dg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd-----g~~L~s~~~DgtI~lW~~~~g~~~~~~~~~ 338 (1342)
|+..+++++.|+.|.|||+...+.+.++++. ..+.++..-++ |.++++++++|.+++|+.+++.++.....
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y---e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~- 278 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY---ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQ- 278 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheechh---hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhcc-
Confidence 9999999999999999999988888888764 33555666565 66999999999999999998775443210
Q ss_pred ccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEc
Q 000703 339 EELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418 (1342)
Q Consensus 339 ~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl 418 (1342)
| +++.+...+.+ +....++.+..|.++.++|.
T Consensus 279 ----~------~~~e~~~~~~~--------------------------------------~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 279 ----S------DSEEIDHLLAI--------------------------------------ESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ----C------Cchhhhcceec--------------------------------------cccCceEEEEccceEEEEEc
Confidence 1 01111111111 11346778889999999987
Q ss_pred ccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeecc
Q 000703 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQ 498 (1342)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~ 498 (1342)
.+....+. +-
T Consensus 311 ~~l~i~k~----------------------------------------------------------------------iv 320 (775)
T KOG0319|consen 311 DELTIVKQ----------------------------------------------------------------------IV 320 (775)
T ss_pred cccEEehh----------------------------------------------------------------------hc
Confidence 66543221 11
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC-cEEEEe
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVSFS 577 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~-~llS~s 577 (1342)
|....|+.++|-.| ....||++++.+.+|+|++.+..+. .+.||+..|.++.....| -++++
T Consensus 321 G~ndEI~Dm~~lG~---------------e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~- 383 (775)
T KOG0319|consen 321 GYNDEILDMKFLGP---------------EESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATG- 383 (775)
T ss_pred CCchhheeeeecCC---------------ccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEe-
Confidence 23455666665432 4678999999999999999877665 789999999999954555 44443
Q ss_pred cCCcccccCcccCEEEEEEcCCCce--eeeEEeccCCCCCeEEEEEcCCC-CEEEEEECCCCEEEEeccCCcc--eeeec
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGIN--RAFRVLQKPERAPIRALRASSSG-RYLLILFRDAPVEVWAMTKNPI--MLRSL 652 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~--~~l~~l~g~h~~~I~~i~~Spdg-~~Las~s~D~tIkvWDl~kt~~--~l~~l 652 (1342)
+-|+++++|-++.+.+ .++....+ |...|.+|+++..| .+|+++|.|+++|+|++.++.. ..-.+
T Consensus 384 ---------sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 384 ---------SKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ---------cCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 3456999998855432 23333334 89999999998754 6899999999999999942100 00000
Q ss_pred ---------cCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEE
Q 000703 653 ---------ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA 723 (1342)
Q Consensus 653 ---------~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~ 723 (1342)
.+.|++++.+ +...++|++
T Consensus 454 ~~~~t~~aHdKdIN~Vaia----------------------------------------------------~ndkLiAT~ 481 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIA----------------------------------------------------PNDKLIATG 481 (775)
T ss_pred hhhHHHHhhcccccceEec----------------------------------------------------CCCceEEec
Confidence 0112222222 335689999
Q ss_pred ecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEE
Q 000703 724 LANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRI 800 (1342)
Q Consensus 724 ~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v 800 (1342)
+.|.+.++|+++..++. +.|.||..-|.+|.| ..+.|+++|.|+|||||.+.+.. +++|.||+..|.++
T Consensus 482 SqDktaKiW~le~~~l~--------~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLL--------GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred ccccceeeecccCceEE--------EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 99999999999855542 235589999999999 56799999999999999999988 58899999999999
Q ss_pred EEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 801 KFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 801 ~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
.|-.+ + ..|++++.||-|+||++++.+|+ .++ ..|. .+|+++.-++. ++ .+++|+.||.|.+|.
T Consensus 554 ~F~~~--~----~qliS~~adGliKlWnikt~eC~-~tl-D~H~--DrvWaL~~~~~----~~--~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 554 SFIRN--G----KQLISAGADGLIKLWNIKTNECE-MTL-DAHN--DRVWALSVSPL----LD--MFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeeC--C----cEEEeccCCCcEEEEeccchhhh-hhh-hhcc--ceeEEEeecCc----cc--eeEecCCCeEEEEee
Confidence 99988 5 78999999999999999999965 566 6776 78999999987 44 578999999999996
Q ss_pred cc
Q 000703 881 VN 882 (1342)
Q Consensus 881 i~ 882 (1342)
=.
T Consensus 618 D~ 619 (775)
T KOG0319|consen 618 DV 619 (775)
T ss_pred cC
Confidence 44
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-43 Score=411.06 Aligned_cols=526 Identities=14% Similarity=0.160 Sum_probs=410.2
Q ss_pred CCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecC-CCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 26 NFGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPI-PPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~-~~V~v~d~~s~~~~~~l~~-H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
.+.+++.+||+ .|.++.. .-+++|+..+++++..++. |++ +|-.++|.|. |.
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~-----------Pvi~ma~~~~--------------g~ 118 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEA-----------PVITMAFDPT--------------GT 118 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCC-----------CeEEEEEcCC--------------Cc
Confidence 36799999998 6666665 5789999999999999998 998 8999999976 47
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE-EEEEeCCCCc
Q 000703 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYDASPEY 181 (1342)
Q Consensus 103 ~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~~~~~~ 181 (1342)
+||+|+.||+|+|||+..+.+++.| .||.+ .|..+.|.|+... .+|+++..|+++++||..+++. +..+..|...
T Consensus 119 LlAtggaD~~v~VWdi~~~~~th~f--kG~gG-vVssl~F~~~~~~-~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~ 194 (775)
T KOG0319|consen 119 LLATGGADGRVKVWDIKNGYCTHSF--KGHGG-VVSSLLFHPHWNR-WLLASGATDGTVRVWNLNDKRTCLHTMILHKSA 194 (775)
T ss_pred eEEeccccceEEEEEeeCCEEEEEe--cCCCc-eEEEEEeCCccch-hheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence 8999999999999999999999996 78888 9999999998643 7899999999999999986654 6777888899
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
+++++|.+ |+..+.++|.|..+.+||+..... .+.. .+ .-.+-++.|
T Consensus 195 vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~----l~~l----------p~------------------ye~~E~vv~ 241 (775)
T KOG0319|consen 195 VTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKK----LKTL----------PL------------------YESLESVVR 241 (775)
T ss_pred eeeeeecc-CCceEEEeccCcEEEEeehhhhhh----hhee----------ch------------------hhheeeEEE
Confidence 99999999 899999999999999999732100 0000 00 002445567
Q ss_pred ccC-----CCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEe
Q 000703 262 SPH-----WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1342)
Q Consensus 262 Spd-----g~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1342)
-++ |.++++++.++.+++||.+++..+....... ...+..++.++....+++...|..|-+.|.++......+.
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 666 6799999999999999999998865443221 1226677788777788888999999999887765433332
Q ss_pred ecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEE
Q 000703 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1342)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lW 416 (1342)
|.++ .|+.+.|... ..++||.++..+.++++
T Consensus 321 G~nd------------EI~Dm~~lG~-------------------------------------e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 321 GYND------------EILDMKFLGP-------------------------------------EESHLAVATNSPELRLY 351 (775)
T ss_pred CCch------------hheeeeecCC-------------------------------------ccceEEEEeCCCceEEE
Confidence 2221 3333333321 14699999999999999
Q ss_pred EcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeee
Q 000703 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1342)
Q Consensus 417 dl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1342)
++++..+. .
T Consensus 352 ~~~~~~c~-----------------------------------------------------------------------i 360 (775)
T KOG0319|consen 352 TLPTSYCQ-----------------------------------------------------------------------I 360 (775)
T ss_pred ecCCCceE-----------------------------------------------------------------------E
Confidence 66532110 2
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeeecCCCeEEEEEcCCC-
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----AVTASFSVHNGTVRGLRWLGNS- 571 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----~~~~~l~gH~~~V~~l~fs~d~- 571 (1342)
+.||+..|-++++.. .|-+||+|+.|.+|++|.+..+ .++....||+..|.+|+++..+
T Consensus 361 i~GH~e~vlSL~~~~----------------~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWS----------------SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred EeCchhheeeeeecc----------------cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 346888888887443 3679999999999999977443 3566778999999999997655
Q ss_pred -cEEEEecCCcccccCcccCEEEEEEcCCCcee----ee--EEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccC
Q 000703 572 -RLVSFSYSQVNEKSGGYINRLVVTCLRSGINR----AF--RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTK 644 (1342)
Q Consensus 572 -~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~----~l--~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~k 644 (1342)
-|+++|. |.++++|++...+.. .+ +...-.|...|++++++|..+++|+||.|++.+||++ .
T Consensus 425 sffvsvS~----------D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l-e 493 (775)
T KOG0319|consen 425 SFFVSVSQ----------DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL-E 493 (775)
T ss_pred cEEEEecC----------CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc-c
Confidence 4555554 459999999652211 11 1112238889999999999999999999999999999 6
Q ss_pred CcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEE
Q 000703 645 NPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1342)
Q Consensus 645 t~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la 721 (1342)
...++.++.+ .+.++.|+|- .+.+|
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~----------------------------------------------------dq~la 521 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKN----------------------------------------------------DQLLA 521 (775)
T ss_pred CceEEEEeeCCccceEEEEeccc----------------------------------------------------cceeE
Confidence 8888877774 3567777632 35689
Q ss_pred EEecCCCEEEEEecCCe-eeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccE
Q 000703 722 FALANGALGVFEVHGRR-IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGI 797 (1342)
Q Consensus 722 ~~~~DgtI~lwdv~g~~-v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V 797 (1342)
+++.|++|++|.++... ++. |.||...|.-.+| +|+.|+|++.||-||+||++++. ..++..|...|
T Consensus 522 T~SgD~TvKIW~is~fSClkT---------~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKT---------FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred eccCCceEEEEEeccceeeee---------ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence 99999999999996544 443 4479999999999 89999999999999999999998 57899999999
Q ss_pred EEEEEecCCCCCCCCCEEEEEECCCeEEEEE
Q 000703 798 RRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1342)
Q Consensus 798 ~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD 828 (1342)
++++-+|. . ..+++++.||.|.+|.
T Consensus 593 WaL~~~~~--~----~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 593 WALSVSPL--L----DMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEEeecCc--c----ceeEecCCCeEEEEee
Confidence 99999998 3 5788999999999994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-42 Score=376.43 Aligned_cols=337 Identities=20% Similarity=0.245 Sum_probs=267.5
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 251 ~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
+|...|+++.|||+|+.|++++.|.++++||+.|.+++.+.. ++..-+..++++|||+.|++|+.||+|++||.++|+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 455568999999999999999999999999999999988775 445678889999999999999999999999999988
Q ss_pred eeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcC
Q 000703 331 QVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDD 410 (1342)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~D 410 (1342)
+...- ..|+ .-.|++++.-|-. .....+.||+.|.|
T Consensus 191 ~~g~~--------l~gH---~K~It~Lawep~h---------------------------------l~p~~r~las~skD 226 (480)
T KOG0271|consen 191 QIGRA--------LRGH---KKWITALAWEPLH---------------------------------LVPPCRRLASSSKD 226 (480)
T ss_pred ccccc--------ccCc---ccceeEEeecccc---------------------------------cCCCccceecccCC
Confidence 54321 1111 0135555544321 01114589999999
Q ss_pred CcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCccccccee
Q 000703 411 GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFK 490 (1342)
Q Consensus 411 G~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k 490 (1342)
|.|+|||+..+.+..
T Consensus 227 g~vrIWd~~~~~~~~----------------------------------------------------------------- 241 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVR----------------------------------------------------------------- 241 (480)
T ss_pred CCEEEEEccCceEEE-----------------------------------------------------------------
Confidence 999999987553211
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCC
Q 000703 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN 570 (1342)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d 570 (1342)
.+.||+.+||||++-. ..++++|+.|++|++|+...|.+.++|.||...|+.|+.+-+
T Consensus 242 -----~lsgHT~~VTCvrwGG-----------------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 242 -----TLSGHTASVTCVRWGG-----------------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred -----EeccCccceEEEEEcC-----------------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 2457999999999864 469999999999999999999999999999999999998855
Q ss_pred CcEEEEecCCcc---------------------------cccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcC
Q 000703 571 SRLVSFSYSQVN---------------------------EKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASS 623 (1342)
Q Consensus 571 ~~llS~s~d~~~---------------------------~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Sp 623 (1342)
-.+-+.+++... ..+|..|.++.+|+....+ +++....| |..-|..+.|||
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtg-Hq~lVn~V~fSP 377 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTG-HQALVNHVSFSP 377 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhc-hhhheeeEEECC
Confidence 433333333211 1245567899999975332 24544455 899999999999
Q ss_pred CCCEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCC
Q 000703 624 SGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSD 703 (1342)
Q Consensus 624 dg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~ 703 (1342)
|++|+|++|.|+.||+||. ++|+.+.+|
T Consensus 378 d~r~IASaSFDkSVkLW~g-~tGk~lasf--------------------------------------------------- 405 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDG-RTGKFLASF--------------------------------------------------- 405 (480)
T ss_pred CccEEEEeecccceeeeeC-CCcchhhhh---------------------------------------------------
Confidence 9999999999999999998 676543322
Q ss_pred CcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEE
Q 000703 704 SKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWD 781 (1342)
Q Consensus 704 ~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWD 781 (1342)
.||.+.|..++| |.++|+|||.|.|+++||
T Consensus 406 ------------------------------------------------RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 406 ------------------------------------------------RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ------------------------------------------------hhccceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 245666778888 888999999999999999
Q ss_pred CCCCce-eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEE
Q 000703 782 VTTGHS-SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1342)
Q Consensus 782 l~tg~~-~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD 828 (1342)
++++++ ..++||...|.+|.|+|| | +++++++.|+.+++|.
T Consensus 438 V~tkKl~~DLpGh~DEVf~vDwspD--G----~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEVFAVDWSPD--G----QRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeeecccCCCCCceEEEEEecCC--C----ceeecCCCceEEEeec
Confidence 999885 569999999999999999 6 8999999999999994
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-41 Score=370.25 Aligned_cols=365 Identities=19% Similarity=0.220 Sum_probs=282.3
Q ss_pred cCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhh
Q 000703 293 LPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKL 372 (1342)
Q Consensus 293 l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~ 372 (1342)
+.++..+++++.|+|+|+.|++|+.|.|+|+||..+..+.+++.++.. .|+.++.+|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~------------WVlcvawsPD---------- 168 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN------------WVLCVAWSPD---------- 168 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc------------EEEEEEECCC----------
Confidence 345678899999999999999999999999999988776666533322 5666666654
Q ss_pred cCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccC
Q 000703 373 CLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSM 452 (1342)
Q Consensus 373 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~ 452 (1342)
|+.|||++.||.|++||.++++.. |.
T Consensus 169 ----------------------------gk~iASG~~dg~I~lwdpktg~~~---------------------g~----- 194 (480)
T KOG0271|consen 169 ----------------------------GKKIASGSKDGSIRLWDPKTGQQI---------------------GR----- 194 (480)
T ss_pred ----------------------------cchhhccccCCeEEEecCCCCCcc---------------------cc-----
Confidence 679999999999999998877532 11
Q ss_pred cCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEE
Q 000703 453 ASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLV 532 (1342)
Q Consensus 453 ~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~ll 532 (1342)
.|.||..+|++|+|.|-++. +...+|
T Consensus 195 -------------------------------------------~l~gH~K~It~Lawep~hl~-----------p~~r~l 220 (480)
T KOG0271|consen 195 -------------------------------------------ALRGHKKWITALAWEPLHLV-----------PPCRRL 220 (480)
T ss_pred -------------------------------------------cccCcccceeEEeecccccC-----------CCccce
Confidence 13468999999999984333 357799
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCC
Q 000703 533 ALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPE 612 (1342)
Q Consensus 533 AsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h 612 (1342)
|+++.||+|+|||+..|.++..+.||+.+|+||+|-++|-+.+.|. |.+|++|+...|. ..+.++| |
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~----------DrtIkvw~a~dG~--~~r~lkG-H 287 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQ----------DRTIKVWRALDGK--LCRELKG-H 287 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCC----------CceEEEEEccchh--HHHhhcc-c
Confidence 9999999999999999999999999999999999999998876554 4599999999988 6777787 8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc-CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCC
Q 000703 613 RAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA-LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1342)
Q Consensus 613 ~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~-~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1342)
...|+.|++|-|- -|=+|..|.+ +.....+. ..-.+++ ....
T Consensus 288 ahwvN~lalsTdy-~LRtgaf~~t---------~~~~~~~se~~~~Al~-----rY~~---------------------- 330 (480)
T KOG0271|consen 288 AHWVNHLALSTDY-VLRTGAFDHT---------GRKPKSFSEEQKKALE-----RYEA---------------------- 330 (480)
T ss_pred chheeeeeccchh-hhhccccccc---------cccCCChHHHHHHHHH-----HHHH----------------------
Confidence 9999999998652 1223333221 21111111 0000000 0000
Q ss_pred CcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEE
Q 000703 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVV 769 (1342)
Q Consensus 692 g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~La 769 (1342)
.....+|.+++++.|.++.+|+....+- |...+++|...|+.++| |++++|
T Consensus 331 --------------------~~~~~~erlVSgsDd~tlflW~p~~~kk-------pi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 331 --------------------VLKDSGERLVSGSDDFTLFLWNPFKSKK-------PITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred --------------------hhccCcceeEEecCCceEEEeccccccc-------chhhhhchhhheeeEEECCCccEEE
Confidence 0001248899999999999999732210 11124589999999999 999999
Q ss_pred EEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCc
Q 000703 770 MGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTL 848 (1342)
Q Consensus 770 sGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~ 848 (1342)
++|-|+.||+||.++|+ +.+|.||-+.|+.|+||.| . ..|++++.|.|++|||+++.+ +...| .||. ..
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD--s----RLlVS~SkDsTLKvw~V~tkK-l~~DL-pGh~--DE 453 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD--S----RLLVSGSKDSTLKVWDVRTKK-LKQDL-PGHA--DE 453 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccC--c----cEEEEcCCCceEEEEEeeeee-ecccC-CCCC--ce
Confidence 99999999999999998 7899999999999999999 3 567889999999999999987 66666 7886 68
Q ss_pred EEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 849 VLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 849 V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
|+.++|+|| |+ .+++|+.|..+|+|.
T Consensus 454 Vf~vDwspD----G~--rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPD----GQ--RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCC----Cc--eeecCCCceEEEeec
Confidence 999999998 66 468999999999995
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=364.32 Aligned_cols=535 Identities=18% Similarity=0.256 Sum_probs=401.9
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeec-CCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
.+.+.|++|| -+.+..+|.|.|+|.+..+-. ||+ .+.. .|+.++.||+ |.+|
T Consensus 17 ~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~-Tl~~e~~~-----------NI~~ialSp~--------------g~ll 70 (893)
T KOG0291|consen 17 AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSY-TLPLETRY-----------NITRIALSPD--------------GTLL 70 (893)
T ss_pred cCcEEECCCCCEEEeccCCEEEEEEccCCcce-eEEeecCC-----------ceEEEEeCCC--------------ceEE
Confidence 4678999999 688889999999999875543 333 3333 8999999987 5789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe--------EEEEEe
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS--------CMWKYD 176 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~--------~i~~~~ 176 (1342)
++.+..|.+.+-+.....+++.|.++ + +|.+++|||++ +++|++. .+.+.||.+-.-. ...++.
T Consensus 71 lavdE~g~~~lvs~~~r~Vlh~f~fk---~-~v~~i~fSPng---~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~ 142 (893)
T KOG0291|consen 71 LAVDERGRALLVSLLSRSVLHRFNFK---R-GVGAIKFSPNG---KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYL 142 (893)
T ss_pred EEEcCCCcEEEEecccceeeEEEeec---C-ccceEEECCCC---cEEEEEe-cceeEEEecCcchhcccCcceEeeeec
Confidence 99999999999999888888887653 3 89999999998 7777665 5789999875222 123566
Q ss_pred CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
+|-+.+.++.|+- |++.|++++.|..+++|++.+. +.+... +..+|..+|
T Consensus 143 g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~-------k~~~~~----------------------~l~gHkd~V 192 (893)
T KOG0291|consen 143 GHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGN-------KNLFTY----------------------ALNGHKDYV 192 (893)
T ss_pred CCccceeEEEecc-CCceEEeccccceEEEEEeccc-------cccceE----------------------eccCCCcce
Confidence 7778999999998 9999999999999999987552 111100 123456679
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEccC-----------------------Cce-----eE----EEecCCCccceEEEE
Q 000703 257 VKFTFSPHWRHIIFVTFPRELVVFDLQY-----------------------ETP-----LF----SAALPRGCAKFLDVL 304 (1342)
Q Consensus 257 ~~~aFSpdg~~ll~~~~d~~I~iwDl~t-----------------------~~~-----l~----~~~l~~~~~~~~~v~ 304 (1342)
+.+-|+.|.-.+.+.+.||.+.+|-... ++. .. ..-+....+.+....
T Consensus 193 vacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~ 272 (893)
T KOG0291|consen 193 VACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAA 272 (893)
T ss_pred EEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeee
Confidence 9999999999999999999999997751 111 10 011111123444444
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCcc
Q 000703 305 ADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANV 384 (1342)
Q Consensus 305 ~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~ 384 (1342)
+.+-...|+++-..|-..|.....-..+|.+. ++ .-.|..+++..
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f~lih~LS--------is----~~~I~t~~~N~----------------------- 317 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS--------IS----DQKILTVSFNS----------------------- 317 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCceEEEEee--------cc----cceeeEEEecc-----------------------
Confidence 55667789999999999899887766666541 11 01344444432
Q ss_pred ccCCCCcccccccccCccEEEEEEcC-CcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeecc
Q 000703 385 DIDSPFEFSDDTLLLSKTHLISISDD-GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEA 463 (1342)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~las~s~D-G~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~ 463 (1342)
.|.+||.++.- |.+.+|+..++.- +
T Consensus 318 ---------------tGDWiA~g~~klgQLlVweWqsEsY--------------------------V------------- 343 (893)
T KOG0291|consen 318 ---------------TGDWIAFGCSKLGQLLVWEWQSESY--------------------------V------------- 343 (893)
T ss_pred ---------------cCCEEEEcCCccceEEEEEeeccce--------------------------e-------------
Confidence 26689988766 8999999876531 0
Q ss_pred ccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEE
Q 000703 464 GKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDV 543 (1342)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~l 543 (1342)
+. .+||...+++++++| +|+++|+|++||.|||
T Consensus 344 ---------------------------lK----QQgH~~~i~~l~YSp----------------Dgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 344 ---------------------------LK----QQGHSDRITSLAYSP----------------DGQLIATGAEDGKVKV 376 (893)
T ss_pred ---------------------------ee----ccccccceeeEEECC----------------CCcEEEeccCCCcEEE
Confidence 01 246889999999999 7999999999999999
Q ss_pred EeCCCCcEEEEeeecCCCeEEEEEcCCCcEE-EEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEc
Q 000703 544 VDVSANAVTASFSVHNGTVRGLRWLGNSRLV-SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRAS 622 (1342)
Q Consensus 544 WDl~tg~~~~~l~gH~~~V~~l~fs~d~~ll-S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~S 622 (1342)
||..+|-|..+|.-|++.|+++.|+..++.+ |.+- |++++.||+...+ .+|++..|..-...+++..
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL----------DGtVRAwDlkRYr--NfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL----------DGTVRAWDLKRYR--NFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeec----------CCeEEeeeecccc--eeeeecCCCceeeeEEEEc
Confidence 9999999999999999999999999888544 4433 4699999998877 7888888777778899999
Q ss_pred CCCCEEEEEECCC-CEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCC
Q 000703 623 SSGRYLLILFRDA-PVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASS 701 (1342)
Q Consensus 623 pdg~~Las~s~D~-tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~ 701 (1342)
|.|..+.+|+.|. .|.||++ ++|+++-.+
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~-qTGqllDiL------------------------------------------------- 474 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSV-QTGQLLDIL------------------------------------------------- 474 (893)
T ss_pred CCCCEEEeeccceEEEEEEEe-ecCeeeehh-------------------------------------------------
Confidence 9999988888775 5788887 666543221
Q ss_pred CCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEE
Q 000703 702 SDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRW 779 (1342)
Q Consensus 702 ~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~l 779 (1342)
.||.|.|.+++| +|+.|||||.|+|||+
T Consensus 475 --------------------------------------------------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 475 --------------------------------------------------SGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred --------------------------------------------------cCCCCcceeeEEccccCeEEeccccceEEE
Confidence 156677777666 8999999999999999
Q ss_pred EECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc-----cccCCC----------
Q 000703 780 WDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN-----SLLQPQ---------- 843 (1342)
Q Consensus 780 WDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~-----~l~~gh---------- 843 (1342)
||+-... ....-.+..-|..++|+|+ | +.||++..||.|.+||+....++.. .+..|.
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPd--G----~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPD--G----KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCC--C----CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9996542 2222347788999999999 6 7899999999999999987654310 111111
Q ss_pred -CCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 844 -FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 844 -~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
..+...+.+++++| |. .|++||..+.|.+|++....
T Consensus 579 sa~~K~Ftti~ySaD----G~--~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 579 SAKGKTFTTICYSAD----GK--CILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccCCceEEEEEcCC----CC--EEEecCCcccEEEEECchhh
Confidence 01356789999998 55 57899999999999998543
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=370.05 Aligned_cols=597 Identities=15% Similarity=0.164 Sum_probs=411.8
Q ss_pred CCCceEeC-CCC-eEEEEcCCeEEEEeCCCcceeEeecC--CCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCC
Q 000703 26 NFGSADLS-PSG-LLAFASGSSISILDSRSLQLISTIPI--PPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 26 ~~~a~~~s-~~g-llA~gs~~~V~v~d~~s~~~~~~l~~--H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
|++-+.-+ ..| .+|......|.+||.+++...+.|-. -+. .|+|++=+|+ .
T Consensus 23 N~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~-----------evt~l~~~~d--------------~ 77 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKA-----------EVTCLRSSDD--------------I 77 (888)
T ss_pred ceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccc-----------eEEEeeccCC--------------c
Confidence 33333333 347 56655667899999999954433322 223 7999987765 5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1342)
.+||.|..||.|+|||..++.....| .||.+ .|+.|.|...| ..|||++.|+.|.+||+-..+-+.++.+|.+.
T Consensus 78 l~lAVGYaDGsVqif~~~s~~~~~tf--ngHK~-AVt~l~fd~~G---~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~ 151 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESEEILITF--NGHKA-AVTTLKFDKIG---TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS 151 (888)
T ss_pred ceEEEEecCceEEeeccCCCceeeee--ccccc-ceEEEEEcccC---ceEeecCCCccEEEEEeccceeeEEeecchHH
Confidence 67999999999999999988777764 78988 99999999887 89999999999999999877778889999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
|+..-|.- +.+.+++.|.|+.|++||+..+.. .+.+ -.+.+.+..+++
T Consensus 152 iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhC----f~Th---------------------------vd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 152 ITQALFLN-GDSFLVSVSKDSMIKFWDLETQHC----FETH---------------------------VDHRGEIWALVL 199 (888)
T ss_pred HhHHhccC-CCeEEEEeccCceEEEEeccccee----eeEE---------------------------ecccceEEEEEE
Confidence 98777766 678899999999999999866432 1111 113456888888
Q ss_pred ccCCCceEEEEcCCeEEEEEccCC-------ce-----eEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 000703 262 SPHWRHIIFVTFPRELVVFDLQYE-------TP-----LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 262 Spdg~~ll~~~~d~~I~iwDl~t~-------~~-----l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1342)
.+ +.+++++.|.++.+|++... +. .+++. ..+.+..+.++..+++++|+|-+.|..|.++++++.
T Consensus 200 ~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~-rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 200 DE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI-RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred ec--ceEEEEecCCceEEEEeecccccccccccceeeccceee-eccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence 87 68899999999999999321 11 12221 123345667777888999999999999999987643
Q ss_pred ceee-eE---------ee-cccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccc
Q 000703 330 EQVH-VM---------CT-MEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLL 398 (1342)
Q Consensus 330 ~~~~-~~---------~~-~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~ 398 (1342)
+... .+ .. .++ + ...+..+.+.. + +....+..+ + ..-.|.+.|..
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e--~------------~~~v~~sl~~~--i-~r~~~ir~~-----~--kiks~dv~~~~ 332 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEE--N------------EDDVEKSLSDE--I-KRLETIRTS-----A--KIKSFDVTPSG 332 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccc--c------------ccchhhhHHHH--H-HHHHheech-----h--heeEEEEEecC
Confidence 2110 00 00 000 0 00111111100 0 000000000 0 00011111111
Q ss_pred cCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCC
Q 000703 399 LSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPS 478 (1342)
Q Consensus 399 ~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~ 478 (1342)
....+|++ -.+.+|..+.+.... .+ .+
T Consensus 333 ~~~~~lv~-l~nNtv~~ysl~~s~--~~--------------------~p------------------------------ 359 (888)
T KOG0306|consen 333 GTENTLVL-LANNTVEWYSLENSG--KT--------------------SP------------------------------ 359 (888)
T ss_pred CcceeEEE-eecCceEEEEeccCC--CC--------------------Cc------------------------------
Confidence 11123333 344555555443310 00 00
Q ss_pred CCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeec
Q 000703 479 NSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVH 558 (1342)
Q Consensus 479 ~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH 558 (1342)
.....-.-.+.||.+.|.++.+|. +..++++| ..+.|+||+..+.++++++.-
T Consensus 360 ---------~~~~~~~i~~~GHR~dVRsl~vS~----------------d~~~~~Sg-a~~SikiWn~~t~kciRTi~~- 412 (888)
T KOG0306|consen 360 ---------EADRTSNIEIGGHRSDVRSLCVSS----------------DSILLASG-AGESIKIWNRDTLKCIRTITC- 412 (888)
T ss_pred ---------cccccceeeeccchhheeEEEeec----------------Cceeeeec-CCCcEEEEEccCcceeEEecc-
Confidence 000000012457999999999997 35566666 577899999999999999864
Q ss_pred CCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEE
Q 000703 559 NGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVE 638 (1342)
Q Consensus 559 ~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIk 638 (1342)
+-+-+..|.|+++.+..+.. .+++.|+|+.++. .+...+ +|++.|..|+.+||++.+++||.|.+|+
T Consensus 413 -~y~l~~~Fvpgd~~Iv~G~k---------~Gel~vfdlaS~~--l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 413 -GYILASKFVPGDRYIVLGTK---------NGELQVFDLASAS--LVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred -ccEEEEEecCCCceEEEecc---------CCceEEEEeehhh--hhhhhh-ccccceeeeeecCCCCceEEecCCcEEE
Confidence 36788899998887765543 4689999998876 333334 4999999999999999999999999999
Q ss_pred EEeccCC-----cceeeecc----------CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCC
Q 000703 639 VWAMTKN-----PIMLRSLA----------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSD 703 (1342)
Q Consensus 639 vWDl~kt-----~~~l~~l~----------~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~ 703 (1342)
+||. +- ++.-+.++ ..+-+++.|
T Consensus 480 fWdf-~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S----------------------------------------- 517 (888)
T KOG0306|consen 480 FWDF-KLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS----------------------------------------- 517 (888)
T ss_pred EEeE-EEEeccCcccceeeeeccceEEeccccEEEEEEc-----------------------------------------
Confidence 9997 21 11101011 112233333
Q ss_pred CcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEe--ecCCEEEEEeCCCcEEEEE
Q 000703 704 SKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA--YRLPHVVMGDRSGNIRWWD 781 (1342)
Q Consensus 704 ~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va--~dg~~LasGs~DgtI~lWD 781 (1342)
|++..+|++..|++|++|-++.-+..- ++-||.=.|.||. +|++++++||.|++|++|-
T Consensus 518 -----------pdgk~LaVsLLdnTVkVyflDtlKFfl--------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 518 -----------PDGKLLAVSLLDNTVKVYFLDTLKFFL--------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred -----------CCCcEEEEEeccCeEEEEEecceeeee--------eecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 456789999999999999997654321 1235665677655 5999999999999999999
Q ss_pred CCCCcee-eeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCC
Q 000703 782 VTTGHSS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTD 860 (1342)
Q Consensus 782 l~tg~~~-~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~ 860 (1342)
+.-|.|+ .|-+|...|++|.|-|.. ..+-++|.|+.|+-||-+..+.+ ..+ .+|. ..|++++..|.
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P~~------~~FFt~gKD~kvKqWDg~kFe~i-q~L-~~H~--~ev~cLav~~~--- 645 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLPKT------HLFFTCGKDGKVKQWDGEKFEEI-QKL-DGHH--SEVWCLAVSPN--- 645 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcccc------eeEEEecCcceEEeechhhhhhh-eee-ccch--heeeeeEEcCC---
Confidence 9999975 589999999999999983 45789999999999999998854 445 6775 68999999998
Q ss_pred CCCCeEEEEEeCCCcEEEEEcc
Q 000703 861 KNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 861 ~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
|+ +++|+|.|.+||+|+..
T Consensus 646 -G~--~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 646 -GS--FVVSSSHDKSIRLWERT 664 (888)
T ss_pred -CC--eEEeccCCceeEeeecc
Confidence 56 68999999999999865
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-36 Score=340.99 Aligned_cols=522 Identities=16% Similarity=0.224 Sum_probs=374.1
Q ss_pred CCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcce--eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 23 SRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
|...+.-+.+||.| .+|+|. .+.|+|||...-.. ..+++--.+ +|.-++|++|+
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-----------~I~Di~Wd~ds----------- 115 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-----------PIKDISWDFDS----------- 115 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-----------ccccceeCCCC-----------
Confidence 44457789999999 788884 57999999865222 223333334 89999999875
Q ss_pred CCCcEEEEEeCC----CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE--
Q 000703 99 SSHLLLAAADRH----GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM-- 172 (1342)
Q Consensus 99 p~g~~LASg~~d----G~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i-- 172 (1342)
+|||..+.. |.+.+||. |..+-+ +.||++ .|+++.|-|..| -.+++++.|+++.+++- -+.
T Consensus 116 ---~RI~avGEGrerfg~~F~~DS--G~SvGe--i~GhSr-~ins~~~KpsRP--fRi~T~sdDn~v~ffeG---PPFKF 182 (603)
T KOG0318|consen 116 ---KRIAAVGEGRERFGHVFLWDS--GNSVGE--ITGHSR-RINSVDFKPSRP--FRIATGSDDNTVAFFEG---PPFKF 182 (603)
T ss_pred ---cEEEEEecCccceeEEEEecC--CCccce--eeccce-eEeeeeccCCCc--eEEEeccCCCeEEEeeC---CCeee
Confidence 555555432 67889985 556666 479999 999999999874 78999999999999984 332
Q ss_pred -EEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000703 173 -WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1342)
Q Consensus 173 -~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1342)
..+..|+.-|.|++|+| |+.++++.|.||.++++|-.. . .+-.. ++. +.+
T Consensus 183 k~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt--g----e~vg~----------l~~------------~~a 233 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT--G----EKVGE----------LED------------SDA 233 (603)
T ss_pred eecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC--c----cEEEE----------ecC------------CCC
Confidence 12334566889999999 999999999999999987321 1 01111 110 123
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc-cceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 252 ~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
|.+.|..+++|||++++++++.|.+++|||+.++.++.+++....- ...+.+.+ +.+.|++.+.+|+|.+.+.....
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eCCeEEEEEcCcEEEEecccCCC
Confidence 5567899999999999999999999999999999999988764321 12333433 38899999999999999988766
Q ss_pred eeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcC
Q 000703 331 QVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDD 410 (1342)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~D 410 (1342)
.++++.++.. .|++++.+++ +++|.|++-|
T Consensus 312 ~~~~i~GHnK------------~ITaLtv~~d--------------------------------------~~~i~SgsyD 341 (603)
T KOG0318|consen 312 VLKVISGHNK------------SITALTVSPD--------------------------------------GKTIYSGSYD 341 (603)
T ss_pred hhheeccccc------------ceeEEEEcCC--------------------------------------CCEEEeeccC
Confidence 5555533222 5677776654 5699999999
Q ss_pred CcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCccccccee
Q 000703 411 GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFK 490 (1342)
Q Consensus 411 G~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k 490 (1342)
|.|.-|+..++..-+ +
T Consensus 342 G~I~~W~~~~g~~~~------------------------~---------------------------------------- 357 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDR------------------------L---------------------------------------- 357 (603)
T ss_pred ceEEEEecCCccccc------------------------c----------------------------------------
Confidence 999999987653211 0
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEe--eecCCCeEEEEEc
Q 000703 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF--SVHNGTVRGLRWL 568 (1342)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l--~gH~~~V~~l~fs 568 (1342)
.| ++|+.-|..++..- ..-+.+.+.|.++++-++..+...+.. .. ...-.+++..
T Consensus 358 ---~g--~~h~nqI~~~~~~~-----------------~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~ 414 (603)
T KOG0318|consen 358 ---AG--KGHTNQIKGMAASE-----------------SGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVL 414 (603)
T ss_pred ---cc--ccccceEEEEeecC-----------------CCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEc
Confidence 00 13566677777653 234567778999999998654433321 11 1223488888
Q ss_pred CCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcce
Q 000703 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM 648 (1342)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~ 648 (1342)
+++-++..++.. .|.+..-.++. +.. +-.-...+++++|+++++|+|+.|+.|+|+.+ ....+
T Consensus 415 ~d~~~avv~~~~----------~iv~l~~~~~~---~~~---~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl-~g~~l 477 (603)
T KOG0318|consen 415 SDGGTAVVACIS----------DIVLLQDQTKV---SSI---PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL-SGDEL 477 (603)
T ss_pred CCCCEEEEEecC----------cEEEEecCCcc---eee---ccccccceEEEcCCCCEEEEecccceEEEEEe-cCCcc
Confidence 876544444432 44444322221 111 11234578999999999999999999999999 34332
Q ss_pred ee-----eccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEE
Q 000703 649 LR-----SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA 723 (1342)
Q Consensus 649 l~-----~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~ 723 (1342)
.. ....+++.+++||+ +..||.+
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd----------------------------------------------------~~yla~~ 505 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPD----------------------------------------------------GAYLAAG 505 (603)
T ss_pred cceeeeecccCCceEEEECCC----------------------------------------------------CcEEEEe
Confidence 21 12246788888876 4678999
Q ss_pred ecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEE
Q 000703 724 LANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRR 799 (1342)
Q Consensus 724 ~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~ 799 (1342)
...+.+.+||+..+.++. ..| .-|.+.|+||+| +..++|+|+.|-+|.||+++.-. +.-...|...|..
T Consensus 506 Da~rkvv~yd~~s~~~~~--~~w-----~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~ 578 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKT--NRW-----AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS 578 (603)
T ss_pred ccCCcEEEEEcccCceec--cee-----eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence 999999999997766532 122 138889999999 88999999999999999998643 3344789999999
Q ss_pred EEEecCCCCCCCCCEEEEEECCCeEEEEECC
Q 000703 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 800 v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~ 830 (1342)
|.|--+ ..|++.+.|-.||+|.+.
T Consensus 579 v~wlde-------~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 579 VAWLDE-------STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEecC-------ceEEeccCcceeEEeccc
Confidence 999876 579999999999999863
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=345.11 Aligned_cols=520 Identities=18% Similarity=0.215 Sum_probs=381.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
|.-+.|- ...+|-|.|.+..+.. ++++ ++.. -|..++.||+| .+|++....|...+-+......++.+.+ ..
T Consensus 26 G~sviSP-vGNrvsv~dLknN~S~-Tl~~-e~~~-NI~~ialSp~g---~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~ 97 (893)
T KOG0291|consen 26 GNSVISP-VGNRVSVFDLKNNKSY-TLPL-ETRY-NITRIALSPDG---TLLLAVDERGRALLVSLLSRSVLHRFNF-KR 97 (893)
T ss_pred CCEEEec-cCCEEEEEEccCCcce-eEEe-ecCC-ceEEEEeCCCc---eEEEEEcCCCcEEEEecccceeeEEEee-cC
Confidence 4456654 3567999999775433 3333 2334 79999999988 8999999999999888887777888888 78
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
.+.|+.|+| |++.+|++.. ..+.+|...+.... ++. ...+.+.. .++-..+.++.
T Consensus 98 ~v~~i~fSP-ng~~fav~~g-n~lqiw~~P~~~~~-----~~~-------pFvl~r~~-----------~g~fddi~si~ 152 (893)
T KOG0291|consen 98 GVGAIKFSP-NGKFFAVGCG-NLLQIWHAPGEIKN-----EFN-------PFVLHRTY-----------LGHFDDITSID 152 (893)
T ss_pred ccceEEECC-CCcEEEEEec-ceeEEEecCcchhc-----ccC-------cceEeeee-----------cCCccceeEEE
Confidence 999999999 9999998864 57778865331110 110 00011100 12234588899
Q ss_pred EccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 000703 261 FSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEE 340 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1342)
||-|.|.+++++.|.+++||+.+..+.+....+.++...++.+.|..|...|++.+.||.|.+|.....
T Consensus 153 Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~----------- 221 (893)
T KOG0291|consen 153 WSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLR----------- 221 (893)
T ss_pred eccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCC-----------
Confidence 999999999999999999999998887777777777788999999999999999999999999975421
Q ss_pred ccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccc
Q 000703 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1342)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~ 420 (1342)
|.. +.+ .-+ . .+|.=-.=....
T Consensus 222 --P~~---------------~~~--------~~k---------------------------d------~eg~~d~~~~~~ 243 (893)
T KOG0291|consen 222 --PPE---------------LDK--------AEK---------------------------D------EEGSDDEEMDED 243 (893)
T ss_pred --Ccc---------------ccc--------ccc---------------------------c------cccccccccccc
Confidence 100 000 000 0 111000000000
Q ss_pred ccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEe--eecc
Q 000703 421 EGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLD--GQLQ 498 (1342)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~--g~l~ 498 (1342)
+.. .+ ...++..+ --+.
T Consensus 244 ~Ee-k~------------------------------------------------------------~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 244 GEE-KT------------------------------------------------------------HKIFWYKTKKHYLN 262 (893)
T ss_pred chh-hh------------------------------------------------------------cceEEEEEEeeeec
Confidence 000 00 00000000 0011
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEec
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~ 578 (1342)
..+..|++.+|+| .-.+||+|-.+|...||++..-.+++.++.-..+|..+.|+.-|..+++++
T Consensus 263 ~~~~kvtaa~fH~----------------~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~ 326 (893)
T KOG0291|consen 263 QNSSKVTAAAFHK----------------GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC 326 (893)
T ss_pred ccccceeeeeccC----------------CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence 1247899999998 467999999999999999999999999998888999999998888888877
Q ss_pred CCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---c
Q 000703 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---P 655 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~ 655 (1342)
... +.+.||+..+-. .+-..++ |...|+++++||||+++|+|+.|+.|||||. .++-|+.++.. .
T Consensus 327 ~kl--------gQLlVweWqsEs--YVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts~ 394 (893)
T KOG0291|consen 327 SKL--------GQLLVWEWQSES--YVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTSG 394 (893)
T ss_pred Ccc--------ceEEEEEeeccc--eeeeccc-cccceeeEEECCCCcEEEeccCCCcEEEEec-cCceEEEEeccCCCc
Confidence 642 378999998765 4444455 8899999999999999999999999999999 79999998874 4
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
++++.|+.. +..+.+.+.||+|+.||+.
T Consensus 395 Vt~v~f~~~----------------------------------------------------g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 395 VTAVQFTAR----------------------------------------------------GNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eEEEEEEec----------------------------------------------------CCEEEEeecCCeEEeeeec
Confidence 788888722 3457889999999999995
Q ss_pred C-CeeeccCCCCCCCccccccceEEEEeec--CCEEEEEeCCC-cEEEEECCCCce-eeeccccccEEEEEEecCCCCCC
Q 000703 736 G-RRIRDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSG-NIRWWDVTTGHS-SQFSTHREGIRRIKFSPVVPGDR 810 (1342)
Q Consensus 736 g-~~v~d~~~~~~~~~~~~~~~~V~~va~d--g~~LasGs~Dg-tI~lWDl~tg~~-~~l~~H~~~V~~v~fSPd~~g~~ 810 (1342)
. +..|.+. -|.. -+..|++.| |..+..|+.|. .|.+|++++|++ -.+.||.++|.++.|+|+ +
T Consensus 423 RYrNfRTft--~P~p------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~--~-- 490 (893)
T KOG0291|consen 423 RYRNFRTFT--SPEP------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD--G-- 490 (893)
T ss_pred ccceeeeec--CCCc------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc--c--
Confidence 3 3344331 1211 346788886 99999999886 799999999994 568999999999999999 5
Q ss_pred CCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCccc
Q 000703 811 SRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSEKK 887 (1342)
Q Consensus 811 ~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~~~ 887 (1342)
..||++++|+|||+||+-.....+.++... ..|+++.|+|+ |+ -||+++-||.|.+||+......
T Consensus 491 --~~LaS~SWDkTVRiW~if~s~~~vEtl~i~----sdvl~vsfrPd----G~--elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 491 --SLLASGSWDKTVRIWDIFSSSGTVETLEIR----SDVLAVSFRPD----GK--ELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred --CeEEeccccceEEEEEeeccCceeeeEeec----cceeEEEEcCC----CC--eEEEEEecceEEEEEhhhceee
Confidence 689999999999999986653333444222 45999999998 67 5799999999999999865544
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=353.59 Aligned_cols=541 Identities=14% Similarity=0.191 Sum_probs=383.3
Q ss_pred CCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 26 NFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.+.|+.-+|+. +||.| .+++|+|||..+...+.+|.||+. .||+++|.-. |.+
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-----------AVt~l~fd~~--------------G~r 121 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA-----------AVTTLKFDKI--------------GTR 121 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc-----------ceEEEEEccc--------------Cce
Confidence 46677777888 78988 789999999999999999999998 9999999865 689
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceE
Q 000703 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLS 183 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~ 183 (1342)
||||+.|+.|+|||+..-.-+.. +.||.. .|+.+-|..+. .+|++.+.|+.|++||+.+..|+.+.-+|...++
T Consensus 122 laSGskDt~IIvwDlV~E~Gl~r--L~GHkd-~iT~~~F~~~~---~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw 195 (888)
T KOG0306|consen 122 LASGSKDTDIIVWDLVGEEGLFR--LRGHKD-SITQALFLNGD---SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIW 195 (888)
T ss_pred EeecCCCccEEEEEeccceeeEE--eecchH-HHhHHhccCCC---eEEEEeccCceEEEEecccceeeeEEecccceEE
Confidence 99999999999999865555545 579988 99998888744 7999999999999999999999999888899999
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc
Q 000703 184 CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP 263 (1342)
Q Consensus 184 ~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSp 263 (1342)
.+++++ ..+++++.|+-+.+|++.-.. +.......+++ ....++.+ ......+.++.-+
T Consensus 196 ~l~~~~---~~lvt~~~dse~~v~~L~~~~--D~~~~~~~~s~--~~~G~~~r--------------qsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 196 ALVLDE---KLLVTAGTDSELKVWELAFED--DEKETNRYIST--KLRGTFIR--------------QSKGREINLVTDF 254 (888)
T ss_pred EEEEec---ceEEEEecCCceEEEEeeccc--cccccccccee--eccceeee--------------ccCCceeEEeecC
Confidence 999977 788888889999999873311 10000000100 00011111 1112345667788
Q ss_pred CCCceEEEEcCCeEEEEEccCCceeEEE------------e--------------------cCCCccceE--EEEEcCCC
Q 000703 264 HWRHIIFVTFPRELVVFDLQYETPLFSA------------A--------------------LPRGCAKFL--DVLADPNN 309 (1342)
Q Consensus 264 dg~~ll~~~~d~~I~iwDl~t~~~l~~~------------~--------------------l~~~~~~~~--~v~~~pdg 309 (1342)
++|.++.-+.|+.+.+|.+.+.+.+... . .-+....+. ++.+++..
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 8898888889999988888653221000 0 000112222 34444333
Q ss_pred C-EEEEEeCCCcEEEEEccC-CceeeeEeecccccccccccCCCC-ceEEEEEccCchhhhhhhhhcCCCCCCCCCcccc
Q 000703 310 D-LLYCAHLDGKLSIWRRKE-GEQVHVMCTMEELIPSIGTSVPSP-SILAVLVSQSESTIQNVAKLCLDAPHSPSANVDI 386 (1342)
Q Consensus 310 ~-~L~s~~~DgtI~lW~~~~-g~~~~~~~~~~~~~~~~g~~~~~~-~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~ 386 (1342)
. .|+. -.+.+|.+..+.- +.. .|.+ .+..+.+- ||=.=
T Consensus 335 ~~~lv~-l~nNtv~~ysl~~s~~~-----------------~p~~~~~~~i~~~---------------------GHR~d 375 (888)
T KOG0306|consen 335 ENTLVL-LANNTVEWYSLENSGKT-----------------SPEADRTSNIEIG---------------------GHRSD 375 (888)
T ss_pred ceeEEE-eecCceEEEEeccCCCC-----------------Cccccccceeeec---------------------cchhh
Confidence 3 4444 4566666555432 110 0111 11111110 11000
Q ss_pred CCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccc
Q 000703 387 DSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQ 466 (1342)
Q Consensus 387 ~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~ 466 (1342)
+..+.++ .+...++| +..+.|++|+..+.+++++.. |
T Consensus 376 VRsl~vS-----~d~~~~~S-ga~~SikiWn~~t~kciRTi~----------------~--------------------- 412 (888)
T KOG0306|consen 376 VRSLCVS-----SDSILLAS-GAGESIKIWNRDTLKCIRTIT----------------C--------------------- 412 (888)
T ss_pred eeEEEee-----cCceeeee-cCCCcEEEEEccCcceeEEec----------------c---------------------
Confidence 1112221 11223333 367899999999888766421 1
Q ss_pred cccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000703 467 LEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDV 546 (1342)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl 546 (1342)
.-+-+..|.| ++.++++|+.+|.+.|+|+
T Consensus 413 -----------------------------------~y~l~~~Fvp----------------gd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 413 -----------------------------------GYILASKFVP----------------GDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred -----------------------------------ccEEEEEecC----------------CCceEEEeccCCceEEEEe
Confidence 1233456777 5789999999999999999
Q ss_pred CCCcEEEEeeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcC-----CCceee-e-----EEeccCCCC
Q 000703 547 SANAVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLR-----SGINRA-F-----RVLQKPERA 614 (1342)
Q Consensus 547 ~tg~~~~~l~gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~-----tG~~~~-l-----~~l~g~h~~ 614 (1342)
.+..++-+...|.++|.+|+.+||+ .++++|.| ++|++||.. .|..+. + +++. -+.
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD----------ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~d 509 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD----------KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LED 509 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCC----------cEEEEEeEEEEeccCcccceeeeeccceEEe--ccc
Confidence 9999988899999999999999988 57765554 599999973 232211 1 2222 245
Q ss_pred CeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec---cCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCC
Q 000703 615 PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1342)
Q Consensus 615 ~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l---~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1342)
.|.|+.+||||+|||++--|++++||-+ .+.+..-++ +.||.++..+|+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyfl-DtlKFflsLYGHkLPV~smDIS~D--------------------------- 561 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFL-DTLKFFLSLYGHKLPVLSMDISPD--------------------------- 561 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEe-cceeeeeeecccccceeEEeccCC---------------------------
Confidence 7899999999999999999999999999 576654333 257888877765
Q ss_pred CcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEE
Q 000703 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVV 769 (1342)
Q Consensus 692 g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~La 769 (1342)
+..+++++.|.+|++|-++-..++. +|-+|+.+|.+|.| +..++.
T Consensus 562 -------------------------SklivTgSADKnVKiWGLdFGDCHK--------S~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 562 -------------------------SKLIVTGSADKNVKIWGLDFGDCHK--------SFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred -------------------------cCeEEeccCCCceEEeccccchhhh--------hhhcccCceeEEEEcccceeEE
Confidence 3568999999999999986443321 23478999999999 777899
Q ss_pred EEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC
Q 000703 770 MGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 770 sGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~ 830 (1342)
+++.||.|+-||-..-+ ++++.+|...|++++.+|+ | ++++++++|.+||+|.-.
T Consensus 609 t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~--G----~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN--G----SFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EecCcceEEeechhhhhhheeeccchheeeeeEEcCC--C----CeEEeccCCceeEeeecc
Confidence 99999999999987654 7889999999999999999 6 789999999999999743
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=316.64 Aligned_cols=605 Identities=15% Similarity=0.142 Sum_probs=384.6
Q ss_pred CCCceEeCCC-CeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 26 NFGSADLSPS-GLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 26 ~~~a~~~s~~-gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
|.+.++.+|- |++||.+++.|++||+++.+.-+.+.-|+. .+|+|+|||+ |+++
T Consensus 39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk-----------~~t~vAfS~~--------------Gryv 93 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRK-----------PLTCVAFSQN--------------GRYV 93 (1080)
T ss_pred cCCcccccccccceeeccCcEEEEEcccccchhheecccCc-----------ceeEEEEcCC--------------CcEE
Confidence 3457888884 799999999999999998887777888887 8999999986 5889
Q ss_pred EEEe--CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCC--CeEEEEECCCCeEEEEEeCCCC
Q 000703 105 AAAD--RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP--SVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 105 ASg~--~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d--~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
|+|- ..-.++||++.....+.+| .+|.- .|++++|+|.+ +++++.+.. -.|.+||.+..-....-.- .+
T Consensus 94 atGEcG~~pa~kVw~la~h~vVAEf--vdHKY-~vtcvaFsp~~---kyvvSVGsQHDMIVnv~dWr~N~~~asnki-ss 166 (1080)
T KOG1408|consen 94 ATGECGRTPASKVWSLAFHGVVAEF--VDHKY-NVTCVAFSPGN---KYVVSVGSQHDMIVNVNDWRVNSSGASNKI-SS 166 (1080)
T ss_pred EecccCCCccceeeeeccccchhhh--hhccc-cceeeeecCCC---cEEEeeccccceEEEhhhhhhccccccccc-ce
Confidence 9986 6678999999998888885 67755 99999999987 888887754 5677888764332211111 45
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcc----cceeeee-------------------------EEEecCcchh
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE----DEVVVKE-------------------------LQIQTDCTEL 231 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~----~~~~~k~-------------------------~~i~~~~~~l 231 (1342)
.|..++|+- |+..+++.+. ..|.+|-+.+... ....++. |.|. ..+.|
T Consensus 167 ~Vsav~fsE-dgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait-~qGhL 243 (1080)
T KOG1408|consen 167 VVSAVAFSE-DGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAIT-AQGHL 243 (1080)
T ss_pred eEEEEEEcc-CCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEe-cccce
Confidence 788999999 9999999986 5788887765321 1111111 1110 00000
Q ss_pred -----hhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCC-----------
Q 000703 232 -----LKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR----------- 295 (1342)
Q Consensus 232 -----~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~----------- 295 (1342)
.||..-|-.. ..+...|+ + -..|.|+.+..++.|+||+.++-..+++++-..
T Consensus 244 vEFSsRRLLDKWVqc--------RTTnAnCI--c--Vs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q 311 (1080)
T KOG1408|consen 244 VEFSSRRLLDKWVQC--------RTTNANCI--C--VSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQ 311 (1080)
T ss_pred eeechhhhhhhhhhh--------hcccccee--e--eecceEEEeeccceeeecCcchhhhccccccccccccchhhccc
Confidence 1111111110 00111233 2 345788888899999999998865555543210
Q ss_pred --------Cccc---eEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCch
Q 000703 296 --------GCAK---FLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSES 364 (1342)
Q Consensus 296 --------~~~~---~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~ 364 (1342)
..+. .+.+.|++..+.|.|.-.|.+|.+||++.-..+.....+ -.+ +.-|+.+-.-|.+
T Consensus 312 ~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~----lyH-----S~ciW~Ve~~p~n- 381 (1080)
T KOG1408|consen 312 PEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM----LYH-----SACIWDVENLPCN- 381 (1080)
T ss_pred ccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee----eec-----cceeeeecccccc-
Confidence 0111 235556788999999999999999999764432221100 000 0012222222211
Q ss_pred hhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccc
Q 000703 365 TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVAL 444 (1342)
Q Consensus 365 ~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~ 444 (1342)
...+... |-| ..-+++.|+||+|++|++..+.....++++.+ +.....+++
T Consensus 382 ---------------------v~~~~~a-clp----~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil---s~~l~ki~y 432 (1080)
T KOG1408|consen 382 ---------------------VHSPTAA-CLP----RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL---SANLSKIPY 432 (1080)
T ss_pred ---------------------ccCcccc-cCC----ccceeEecCCCcEEEeecccccccceeecccc---hhhhhcCcc
Confidence 1112111 112 22589999999999999987433222322211 111111111
Q ss_pred -cCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCC
Q 000703 445 -CGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGN 523 (1342)
Q Consensus 445 -~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~ 523 (1342)
++. +.+-+|.... ..+-. +...+ .-...+.+|+++|
T Consensus 433 ~d~~-----------~q~~~d~~~~---------------~fdka----~~s~~-d~r~G~R~~~vSp------------ 469 (1080)
T KOG1408|consen 433 EDST-----------QQIMHDASAG---------------IFDKA----LVSTC-DSRFGFRALAVSP------------ 469 (1080)
T ss_pred ccCc-----------hhhhhhccCC---------------ccccc----chhhc-CcccceEEEEECC------------
Confidence 110 0000000000 00000 00000 1124688999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCC---CcEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 524 YPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN---SRLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 524 ~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d---~~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
+|+.||+|..-|+++|||+..-+....+..|...|.+++|+-. .++++ +++-|.-|.|+|+...
T Consensus 470 ----~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA---------SasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 470 ----DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA---------SASRDRLIHVYDVKRN 536 (1080)
T ss_pred ----CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh---------hccCCceEEEEecccc
Confidence 6999999999999999999888777788999999999999743 24442 2233457899998532
Q ss_pred ceeeeEEeccCCCCCeEEEEEcCCC--CEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCcc
Q 000703 601 INRAFRVLQKPERAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQS 678 (1342)
Q Consensus 601 ~~~~l~~l~g~h~~~I~~i~~Spdg--~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~ 678 (1342)
- -.+.++.+ |...|++|.|--.| ..+++++.|+.|. ++..+...-.+.+..+. +
T Consensus 537 y-~l~qtld~-HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t--------------------~- 592 (1080)
T KOG1408|consen 537 Y-DLVQTLDG-HSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHT--------------------Q- 592 (1080)
T ss_pred c-chhhhhcc-cccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccc--------------------c-
Confidence 1 24455555 89999999999877 7789999998864 44311100001010000 0
Q ss_pred ccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec-CCeeeccCCCCCCCccccccce
Q 000703 679 SLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGL 757 (1342)
Q Consensus 679 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~-g~~v~d~~~~~~~~~~~~~~~~ 757 (1342)
.++-+.++ +-..++...++++++.|..|++|+++ |+.++.|+.. .+|+|.
T Consensus 593 ---------t~~ktTlY--------------Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs------~~~eG~ 643 (1080)
T KOG1408|consen 593 ---------TLSKTTLY--------------DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS------RDHEGD 643 (1080)
T ss_pred ---------ccccceEE--------------EeeeCCCcceEEEEecccceEEEeccccceeeeeccc------ccCCCc
Confidence 00000000 01123456788999999999999994 6665554321 156676
Q ss_pred EEEEee--cCCEEEEEeCCCcEEEEECCCCce-eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000703 758 ITAMAY--RLPHVVMGDRSGNIRWWDVTTGHS-SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1342)
Q Consensus 758 V~~va~--dg~~LasGs~DgtI~lWDl~tg~~-~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t 831 (1342)
...+.. .|-+||+...|++|.++|.-+|++ .++.||...|+.+.|++| . +.|++.+.||-|-||.+-.
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD--C----kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND--C----KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc--c----hhheeecCCceEEEEECch
Confidence 666665 688999999999999999999994 688999999999999999 4 7899999999999998854
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=322.10 Aligned_cols=275 Identities=18% Similarity=0.207 Sum_probs=235.9
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC---cEEEE
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS---RLVSF 576 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~---~llS~ 576 (1342)
-+.+|+.+.|++ ++..||+|+.+|.++||+..+...+.+|.||++.|.++.|.|.. .++++
T Consensus 174 d~rPis~~~fS~----------------ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 174 DTRPISGCSFSR----------------DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred CCCcceeeEeec----------------CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee
Confidence 357888889887 68999999999999999999999999999999999999999973 45554
Q ss_pred ecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--- 653 (1342)
+ .|+++++|++.+.+ ++..+.+ |...|..++|+|+|+||++++.|.+-++||+ .++..+...+
T Consensus 238 s----------~Dgtvklw~~~~e~--~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRlWD~-~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 238 S----------ADGTVKLWKLSQET--PLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRLWDL-ETKSELLLQEGHS 303 (459)
T ss_pred c----------cCCceeeeccCCCc--chhhhhc-chhhheeeeecCCCceeeecccccchhhccc-ccchhhHhhcccc
Confidence 4 45699999998765 7777777 8899999999999999999999999999999 6776543333
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEE
Q 000703 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1342)
Q Consensus 654 ~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwd 733 (1342)
.++.+++|.|+ +..+++|+.|..-+|||
T Consensus 304 ~~v~~iaf~~D----------------------------------------------------GSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 304 KGVFSIAFQPD----------------------------------------------------GSLAATGGLDSLGRVWD 331 (459)
T ss_pred cccceeEecCC----------------------------------------------------CceeeccCccchhheee
Confidence 35777888765 35678899999999999
Q ss_pred ec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCC
Q 000703 734 VH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 734 v~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
+. |+.+-- |.+|...|.+|+| +|.+||+|+.|+++||||++... +.++++|..-|+.|+|+|.. |
T Consensus 332 lRtgr~im~---------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~-g- 400 (459)
T KOG0272|consen 332 LRTGRCIMF---------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE-G- 400 (459)
T ss_pred cccCcEEEE---------ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC-C-
Confidence 94 665532 3478899999999 89999999999999999999876 68899999999999999963 4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
.+|+++++|++++||...+..++ ++| .||. +.|.+++.+++ ++ .+++++.|++||+|.
T Consensus 401 ---~fL~TasyD~t~kiWs~~~~~~~-ksL-aGHe--~kV~s~Dis~d----~~--~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 ---YFLVTASYDNTVKIWSTRTWSPL-KSL-AGHE--GKVISLDISPD----SQ--AIATSSFDRTIKLWR 458 (459)
T ss_pred ---eEEEEcccCcceeeecCCCcccc-hhh-cCCc--cceEEEEeccC----Cc--eEEEeccCceeeecc
Confidence 78999999999999999999865 466 7886 78999999998 55 689999999999995
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=322.14 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=233.9
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCC
Q 000703 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1342)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~ 375 (1342)
+..|+..+.|++|++.|+|++-+|.+++|+......+.++.++.. .+.++.|.|..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~------------~v~~~~fhP~~------------ 229 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS------------RVGAAVFHPVD------------ 229 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc------------ceeeEEEccCC------------
Confidence 346777888999999999999999999999998877777754322 56677777642
Q ss_pred CCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCc
Q 000703 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASS 455 (1342)
Q Consensus 376 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~ 455 (1342)
++..|||++.||+|++|++..+.. +
T Consensus 230 ------------------------~~~~lat~s~Dgtvklw~~~~e~~--------------------------l----- 254 (459)
T KOG0272|consen 230 ------------------------SDLNLATASADGTVKLWKLSQETP--------------------------L----- 254 (459)
T ss_pred ------------------------CccceeeeccCCceeeeccCCCcc--------------------------h-----
Confidence 034899999999999999865421 1
Q ss_pred CcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEE
Q 000703 456 ADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALG 535 (1342)
Q Consensus 456 g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsG 535 (1342)
+.+.||...|..++|+| +|++|+++
T Consensus 255 ---------------------------------------~~l~gH~~RVs~VafHP----------------sG~~L~Ta 279 (459)
T KOG0272|consen 255 ---------------------------------------QDLEGHLARVSRVAFHP----------------SGKFLGTA 279 (459)
T ss_pred ---------------------------------------hhhhcchhhheeeeecC----------------CCceeeec
Confidence 23556889999999999 69999999
Q ss_pred eCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCC
Q 000703 536 TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAP 615 (1342)
Q Consensus 536 s~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~ 615 (1342)
+.|.+-++||+.++..+....||+..|.+|+|.+||.+++ +|+.|+.-+|||++||+ ++..+.+ |..+
T Consensus 280 sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~---------tGGlD~~~RvWDlRtgr--~im~L~g-H~k~ 347 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAA---------TGGLDSLGRVWDLRTGR--CIMFLAG-HIKE 347 (459)
T ss_pred ccccchhhcccccchhhHhhcccccccceeEecCCCceee---------ccCccchhheeecccCc--EEEEecc-cccc
Confidence 9999999999999999888899999999999999999886 56677788999999999 5666677 9999
Q ss_pred eEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCccc
Q 000703 616 IRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVST 695 (1342)
Q Consensus 616 I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~ 695 (1342)
|.+|.|||.|..||+|+.|++++|||+ +....+.+++.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDL-R~r~~ly~ipA----------------------------------------- 385 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDL-RMRSELYTIPA----------------------------------------- 385 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeee-cccccceeccc-----------------------------------------
Confidence 999999999999999999999999999 55444443321
Q ss_pred ccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEe
Q 000703 696 PTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGD 772 (1342)
Q Consensus 696 ~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs 772 (1342)
|...|+.|.| -|.+|++++
T Consensus 386 ----------------------------------------------------------H~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 386 ----------------------------------------------------------HSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ----------------------------------------------------------ccchhhheEecccCCeEEEEcc
Confidence 1122222333 477999999
Q ss_pred CCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEE
Q 000703 773 RSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1342)
Q Consensus 773 ~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD 828 (1342)
.|++++||...+.+ ++++.||.+.|.++..+|+ + +.|++++.|+|||+|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d--~----~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD--S----QAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccC--C----ceEEEeccCceeeecc
Confidence 99999999999988 6889999999999999999 5 7899999999999994
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=290.01 Aligned_cols=291 Identities=15% Similarity=0.222 Sum_probs=236.0
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC-----CCcEEEEeeecCCCeEEE
Q 000703 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS-----ANAVTASFSVHNGTVRGL 565 (1342)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~-----tg~~~~~l~gH~~~V~~l 565 (1342)
+.+.|.|.||+..|+.++..+. +-..+.+++.|.+|.+|++. .|...+.|.||+-.|..+
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~---------------~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv 69 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIK---------------NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDV 69 (315)
T ss_pred heeeeeecCCCceEEEEEeecC---------------CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecce
Confidence 4567888999999999998872 35789999999999999985 567889999999999999
Q ss_pred EEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCC
Q 000703 566 RWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKN 645 (1342)
Q Consensus 566 ~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt 645 (1342)
..++||.+.. ++++|+++++||+.+|+ +.+.+.| |..-|.+++||+|.+.+++||+|++|++|++ ..
T Consensus 70 ~~s~dg~~al---------S~swD~~lrlWDl~~g~--~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt-~g 136 (315)
T KOG0279|consen 70 VLSSDGNFAL---------SASWDGTLRLWDLATGE--STRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-LG 136 (315)
T ss_pred EEccCCceEE---------eccccceEEEEEecCCc--EEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeee-cc
Confidence 9999997653 34567799999999997 5555566 8899999999999999999999999999998 44
Q ss_pred cceeeecc-----CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE
Q 000703 646 PIMLRSLA-----LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1342)
Q Consensus 646 ~~~l~~l~-----~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l 720 (1342)
. +..++. .-|+++.|+|.. ....+
T Consensus 137 ~-ck~t~~~~~~~~WVscvrfsP~~--------------------------------------------------~~p~I 165 (315)
T KOG0279|consen 137 V-CKYTIHEDSHREWVSCVRFSPNE--------------------------------------------------SNPII 165 (315)
T ss_pred c-EEEEEecCCCcCcEEEEEEcCCC--------------------------------------------------CCcEE
Confidence 3 433332 236889999751 12468
Q ss_pred EEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccccccEE
Q 000703 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIR 798 (1342)
Q Consensus 721 a~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~ 798 (1342)
+++++|++|++||+++-+++. .|.||.+.++.+++ ||..+++|+.||.+.+||++.++......|...|.
T Consensus 166 vs~s~DktvKvWnl~~~~l~~--------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRT--------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred EEccCCceEEEEccCCcchhh--------ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 899999999999998877653 24579999999888 99999999999999999999988555556899999
Q ss_pred EEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccc-CCCC-----CCCcEEEEEEeCCCCCCCCCeEEEEEeC
Q 000703 799 RIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLL-QPQF-----PGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1342)
Q Consensus 799 ~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~-~gh~-----~~~~V~~l~ws~d~~~~g~~~~L~s~s~ 872 (1342)
+++|+|+ .+-+.+..+..|+|||++++..+. .|. .... .....++++|++| |. .|.+|-.
T Consensus 238 sl~fspn-------rywL~~at~~sIkIwdl~~~~~v~-~l~~d~~g~s~~~~~~~clslaws~d----G~--tLf~g~t 303 (315)
T KOG0279|consen 238 SLCFSPN-------RYWLCAATATSIKIWDLESKAVVE-ELKLDGIGPSSKAGDPICLSLAWSAD----GQ--TLFAGYT 303 (315)
T ss_pred eEEecCC-------ceeEeeccCCceEEEeccchhhhh-hccccccccccccCCcEEEEEEEcCC----Cc--EEEeeec
Confidence 9999999 565556678889999999987442 331 1111 1245689999998 66 5679999
Q ss_pred CCcEEEEEcc
Q 000703 873 DSSFRLIEVN 882 (1342)
Q Consensus 873 DgtIrvWdi~ 882 (1342)
|+.||+|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999975
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=278.11 Aligned_cols=273 Identities=14% Similarity=0.196 Sum_probs=222.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEe
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1342)
.-+||+++.|.|||+|.+.||.|.+++.-..+.|+.++.+|+++.++++.. ..|+++|++++...++.++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~----------qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN----------QHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC----------CeeEEEEccCCCCCceeEE
Confidence 348899999999999999999999999877789999999999988876654 3899999999988788888
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCC
Q 000703 609 QKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHK 686 (1342)
Q Consensus 609 ~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~ 686 (1342)
.+ |...|++|.|..||+++.+|+.||++||||+ +...+.|.+. .+|+.+..+|.
T Consensus 80 e~-h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl-R~~~~qR~~~~~spVn~vvlhpn---------------------- 135 (311)
T KOG0315|consen 80 EG-HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL-RSLSCQRNYQHNSPVNTVVLHPN---------------------- 135 (311)
T ss_pred ec-cCCceEEEEEeecCeEEEecCCCceEEEEec-cCcccchhccCCCCcceEEecCC----------------------
Confidence 77 8889999999999999999999999999999 7877777665 45666655532
Q ss_pred CccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEe--ec
Q 000703 687 ADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA--YR 764 (1342)
Q Consensus 687 ~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va--~d 764 (1342)
...|.++..+|.|++||+..+.... ...|+. +-.|.+++ +|
T Consensus 136 ------------------------------QteLis~dqsg~irvWDl~~~~c~~--~liPe~-----~~~i~sl~v~~d 178 (311)
T KOG0315|consen 136 ------------------------------QTELISGDQSGNIRVWDLGENSCTH--ELIPED-----DTSIQSLTVMPD 178 (311)
T ss_pred ------------------------------cceEEeecCCCcEEEEEccCCcccc--ccCCCC-----CcceeeEEEcCC
Confidence 1346789999999999996553311 112322 12355544 59
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-------eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc
Q 000703 765 LPHVVMGDRSGNIRWWDVTTGH-------SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN 837 (1342)
Q Consensus 765 g~~LasGs~DgtI~lWDl~tg~-------~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~ 837 (1342)
|.+|+.+...|+.++|++-+++ ..+|+.|.+.|.++.|||| + ++||++|.|+|++||++++.-.+..
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~----k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--V----KYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--C----cEEEeecCCceEEEEecCCceeeEE
Confidence 9999999999999999998754 2457999999999999999 5 8999999999999999988721322
Q ss_pred cccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCccc
Q 000703 838 SLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSEKK 887 (1342)
Q Consensus 838 ~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~~~ 887 (1342)
.+ ++|. .++++.+|+.| ++ +|++|+.|+.+|+|++..++..
T Consensus 253 ~l-~gh~--rWvWdc~FS~d----g~--YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 253 VL-TGHQ--RWVWDCAFSAD----GE--YLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred Ee-ecCC--ceEEeeeeccC----cc--EEEecCCCCceeecccccCcee
Confidence 33 6665 79999999998 55 7999999999999999876643
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.8e-29 Score=289.48 Aligned_cols=617 Identities=17% Similarity=0.230 Sum_probs=363.9
Q ss_pred CCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEE
Q 000703 27 FGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1342)
Q Consensus 27 ~~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1342)
.+..+|+|.+++|||++..|.+|||.....+.+|+||.+ .|+|++|-|.... -..++|
T Consensus 17 ~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-----------~VnC~~~l~~s~~-----------~a~~vs 74 (764)
T KOG1063|consen 17 PKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVA-----------RVNCVHWLPTSEI-----------VAEMVS 74 (764)
T ss_pred cccccccccceEEecCCceEEEeCcccceeEEeccCCcc-----------ceEEEEEcccccc-----------cceEEE
Confidence 456788999999999999999999999988999999999 9999999997531 128999
Q ss_pred EeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC------------------
Q 000703 107 ADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS------------------ 168 (1342)
Q Consensus 107 g~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t------------------ 168 (1342)
|+.||+|++|.++.-..+....+++|.+ ++. |+.... ........|+++.+||.+.
T Consensus 75 G~sD~~v~lW~l~~~~~~~i~~~~g~~~-~~~--cv~a~~---~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ip 148 (764)
T KOG1063|consen 75 GDSDGRVILWKLRDEYLIKIYTIQGHCK-ECV--CVVARS---SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIP 148 (764)
T ss_pred ccCCCcEEEEEEeehheEEEEeecCcce-eEE--EEEeee---eEEEeeccCceEEEeecCCCceeeehheehhhhhHhh
Confidence 9999999999998554444444566655 443 333211 1222224567777777621
Q ss_pred ------------------------------C--eEEEEEeCCCCceEEEEecCCCC--CEEEEEeCCCeEEEEEecCCcc
Q 000703 169 ------------------------------A--SCMWKYDASPEYLSCIRRNPFDA--RHFCVLGLKGLLLSVRVLGQKE 214 (1342)
Q Consensus 169 ------------------------------g--~~i~~~~~~~~~v~~v~fsP~d~--~~la~~s~dG~v~~~d~~~~~~ 214 (1342)
+ +.+..+.+|.+-|.+++|..+.+ -.||++|.|..|++|.+.....
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 1 12344567777888888887544 5678888999999998765321
Q ss_pred cceeeeeEEEec--Ccc---hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeE
Q 000703 215 DEVVVKELQIQT--DCT---ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLF 289 (1342)
Q Consensus 215 ~~~~~k~~~i~~--~~~---~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~ 289 (1342)
.+...++....+ +.+ .+..+.-.++. ..-..+|...|.++-++|++..|++++.|+++.||-..+.+-+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~-----eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW 303 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISF-----EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW 303 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEeh-----hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceE
Confidence 111111111000 000 00000000000 00123567789999999999999999999999999988763332
Q ss_pred --EEec---CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCch
Q 000703 290 --SAAL---PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSES 364 (1342)
Q Consensus 290 --~~~l---~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~ 364 (1342)
++.+ .+....|....++|++..+++-+.-|..++|..+... .+++ + |.++ +
T Consensus 304 v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~---~---~~iS----------------G- 359 (764)
T KOG1063|consen 304 VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-FWTQ---E---PVIS----------------G- 359 (764)
T ss_pred EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-ceee---c---cccc----------------c-
Confidence 2222 1224569999999999999999999999999844321 1221 1 1110 0
Q ss_pred hhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccccccccc-ccccccCCccccccc
Q 000703 365 TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQK-DAIKSGMDADVIDVA 443 (1342)
Q Consensus 365 ~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~-~~~~~~~~~~v~~v~ 443 (1342)
..+.++++...|+ |..|.++|.|.+-|++-.- ++. .+.+ .+-..-|+-++..++
T Consensus 360 ----H~~~V~dv~W~ps-------------------GeflLsvs~DQTTRlFa~w-g~q-~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 360 ----HVDGVKDVDWDPS-------------------GEFLLSVSLDQTTRLFARW-GRQ-QEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred ----ccccceeeeecCC-------------------CCEEEEeccccceeeeccc-ccc-cceeeecccccccccceeee
Confidence 1223334433332 5699999999999986432 110 0000 000011222222222
Q ss_pred ccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCC-Cccccc----
Q 000703 444 LCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSP-SLTATL---- 518 (1342)
Q Consensus 444 ~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp-~~~~~~---- 518 (1342)
|..+ .+ +.++|-...|.. .|.+| ++..++
T Consensus 415 ~vn~----------------------------------------~~-----~FVSgAdEKVlR-vF~aPk~fv~~l~~i~ 448 (764)
T KOG1063|consen 415 FVNE----------------------------------------DL-----QFVSGADEKVLR-VFEAPKSFVKSLMAIC 448 (764)
T ss_pred hccC----------------------------------------Cc-----eeeecccceeee-eecCcHHHHHHHHHHh
Confidence 2110 01 111222222322 12222 111111
Q ss_pred ----------ccCCCCCCC---CCCEEEEEeCCCcEE-EEe--C-----------CCC---------cEEEEeeecCCCe
Q 000703 519 ----------ARGGNYPAV---AVPLVALGTQSGAVD-VVD--V-----------SAN---------AVTASFSVHNGTV 562 (1342)
Q Consensus 519 ----------~~~~~~~~~---~~~llAsGs~DGtI~-lWD--l-----------~tg---------~~~~~l~gH~~~V 562 (1342)
..|-+-|+- ..+..---+++|..- +|- . .+. ...+.|.||-..|
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv 528 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEV 528 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeE
Confidence 111111110 011110012222220 110 0 000 0234567999999
Q ss_pred EEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEec
Q 000703 563 RGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 563 ~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl 642 (1342)
.+++.+|++.+++.+.-... .....|+||+..+-. ....+.+ |.-.|+.|+|||||+||++.++|+++.+|..
T Consensus 529 ~~l~~s~~gnliASaCKS~~----~ehAvI~lw~t~~W~--~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSL----KEHAVIRLWNTANWL--QVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred EEEEecCCCCEEeehhhhCC----ccceEEEEEeccchh--hhheecc-cceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 99999999998876653211 122369999876644 3444566 8889999999999999999999999999987
Q ss_pred cCCcceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE
Q 000703 643 TKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1342)
Q Consensus 643 ~kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l 720 (1342)
.++-..-..+. .+.+.+-|.-+- .|....|
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW------------------------------------------------~pde~~F 633 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSW------------------------------------------------SPDEKYF 633 (764)
T ss_pred ecccchhhhhccccccceEEEEccc------------------------------------------------Cccccee
Confidence 22211111221 122333343110 1223459
Q ss_pred EEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-------cCCEEEEEeCCCcEEEEECC------C-Cc
Q 000703 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-------RLPHVVMGDRSGNIRWWDVT------T-GH 786 (1342)
Q Consensus 721 a~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-------dg~~LasGs~DgtI~lWDl~------t-g~ 786 (1342)
|+++.|.+|++|.....+.+ +..++ ....+...|++++| .+..++.|=..|.|.+|... + +.
T Consensus 634 aTaSRDK~VkVW~~~~~~d~-~i~~~---a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDK-YISRF---ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred EEecCCceEEEEeccCchhh-hhhhh---chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 99999999999998543211 00111 11134467899998 33478999999999999965 1 11
Q ss_pred ------eeeeccccccEEEEEEecCCCCC----CCCCEEEEEECCCeEEEEECC
Q 000703 787 ------SSQFSTHREGIRRIKFSPVVPGD----RSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 787 ------~~~l~~H~~~V~~v~fSPd~~g~----~~~~~Las~s~DgtI~IWDl~ 830 (1342)
.....+|.+.|+.+.|+|..+.+ ..--.|++++.|.++||++++
T Consensus 710 ~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 710 FNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11235788999999999973110 001237999999999999864
No 18
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-31 Score=324.52 Aligned_cols=589 Identities=17% Similarity=0.225 Sum_probs=380.3
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC---C---cEEEEeeecCCCeEEEEEcCCCc-EE
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA---N---AVTASFSVHNGTVRGLRWLGNSR-LV 574 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t---g---~~~~~l~gH~~~V~~l~fs~d~~-ll 574 (1342)
...+.|+|++ +..+ ...+||.|.+||+|.+||... + .++.++..|++.|++|.|++... ++
T Consensus 65 ~rF~kL~W~~-----------~g~~-~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGS-----------YGSH-SHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccceeeeecc-----------cCCC-ccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 4566788887 2111 124899999999999999864 2 35677889999999999998765 55
Q ss_pred EEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCC-CCEEEEEECCCCEEEEeccCCcceeeecc
Q 000703 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spd-g~~Las~s~D~tIkvWDl~kt~~~l~~l~ 653 (1342)
+ +|..+++|.|||+..-+ .++.-..-.-.+.|.+|+|... .+.||+++.++.+-|||+ |..+.+-.+.
T Consensus 133 A---------SGa~~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl-r~~~pii~ls 201 (1049)
T KOG0307|consen 133 A---------SGADDGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL-RKKKPIIKLS 201 (1049)
T ss_pred e---------ccCCCCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc-cCCCcccccc
Confidence 3 44556799999997632 2333111113457899999875 467889999999999999 4433332222
Q ss_pred -----CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCC
Q 000703 654 -----LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1342)
Q Consensus 654 -----~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dgt 728 (1342)
..+.+++|+|+.. .++++++.|
T Consensus 202 ~~~~~~~~S~l~WhP~~a---------------------------------------------------Tql~~As~d-- 228 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHA---------------------------------------------------TQLLVASGD-- 228 (1049)
T ss_pred cCCCccceeeeeeCCCCc---------------------------------------------------eeeeeecCC--
Confidence 1234556655411 111111111
Q ss_pred EEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCC
Q 000703 729 LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVV 806 (1342)
Q Consensus 729 I~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~ 806 (1342)
+.+-.|.+||++.-. .+.+.+|...|.++.|.+..
T Consensus 229 -------------------------------------------d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 229 -------------------------------------------DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred -------------------------------------------CCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 012368899987643 56788999999999999962
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCcc
Q 000703 807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSEK 886 (1342)
Q Consensus 807 ~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~~ 886 (1342)
. .+|++++.|+.|.+|+.+++|-+ ..+.. .+.|++++.|+|. .+-+++.++.||.|.|+.+.....
T Consensus 266 ~-----~lllSsgkD~~ii~wN~~tgEvl-~~~p~---~~nW~fdv~w~pr-----~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 266 P-----RLLLSSGKDNRIICWNPNTGEVL-GELPA---QGNWCFDVQWCPR-----NPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred c-----hhhhcccCCCCeeEecCCCceEe-eecCC---CCcceeeeeecCC-----CcchhhhheeccceeeeeeecCCc
Confidence 1 56889999999999999999844 34422 2589999999997 665688999999999999875432
Q ss_pred ccccccccccccccccCCCcccceecccchHHHHHHHHHhCCCCCcccccc-CCccCCCCCCCCCCCChhhh-hhhhccC
Q 000703 887 KIGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCS-TTIKKRPHLIPGTPSSQKDL-RSYMIGL 964 (1342)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 964 (1342)
-. .... . |. . .+-|-..-|+.+|.|+++|. +..|+| +|++++++.. +.+-|+
T Consensus 332 ~~-~~~~--~-k~-------~----------~a~~~~~~l~~~PkW~~~P~~Gasf~f----ggkLvtf~~~~~~V~I~- 385 (1049)
T KOG0307|consen 332 DL-VQQA--Q-KI-------A----------QAAQPSIPLKKPPKWIRRPLDGASFAF----GGKLVTFEPESKGVFIT- 385 (1049)
T ss_pred cc-hhhh--h-hh-------h----------hhccccccccCCcceeecccccceeec----CceEEEEeccccccccc-
Confidence 21 1000 0 00 0 00011123677899999999 998887 8888888876 455552
Q ss_pred CCCCCccchhHHHhhcccccccccccchHHHHHHHHHhccch------hHHHH--HHHHHcCCchHHHHHhhhHHHHHHH
Q 000703 965 PPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGY------AARFA--FAAAVFGETSEALFWLQLPRALNHL 1036 (1342)
Q Consensus 965 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~r~~--~~a~~fg~~~~~~fw~~l~~~~~~~ 1036 (1342)
| ++..++.+-..+.. .....+|..||+++. .+|.. ++.++|++..+..|-.+|+|....+
T Consensus 386 ----q--~e~~~l~~~~~l~~------alk~~~l~~~c~kk~~~~~~e~ek~~W~lLk~~~e~~sr~K~~~~Lgy~k~~~ 453 (1049)
T KOG0307|consen 386 ----Q--TEKSLLDRNTALSL------ALKDANLGDYCEKKLVESESEEEKLNWGLLKALLERDSRTKLLSLLGYVKDDL 453 (1049)
T ss_pred ----c--chhhhcCchhHHHH------hhccchHHHHHHHHhhhhhhhHHHHHHHHHHHHhccchhhHHHHHhccCccch
Confidence 3 33333333211111 111347888898873 33333 4445555555555555443333322
Q ss_pred HHhccCCCCCCCCCCCCchhhhhhhhhhccCCCCCCCCCcCCccchhhhhhcccchHHHHHHHHHHHHHhh-ccchHHHH
Q 000703 1037 MRKLKRSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHE-KLEGEQAI 1115 (1342)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~ 1115 (1342)
-++..++..++ .+..+ . . +++ .....-+ ..+.+..+
T Consensus 454 e~~~~~~~~~~-----------------------------------~d~~~-~-~-~q~-----~~~~~~~~~~s~~~d~ 490 (1049)
T KOG0307|consen 454 EADQDKNVESG-----------------------------------TDTSI-F-S-EQF-----VPEPKGSGNISLDSDI 490 (1049)
T ss_pred hhhhhhccccc-----------------------------------ccccc-c-c-hhh-----cccCCCCcccCCCCcH
Confidence 22222110000 00000 0 0 000 0000000 13444557
Q ss_pred HHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHHHhcCchH
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQ 1195 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~~~~g~~~ 1195 (1342)
..++.+++..|++..||++||+.+ ..++|| ++|.....|+++++-+.+.+..-+. .--..+|.+.+--
T Consensus 491 d~~Is~alitgd~~~aV~~cl~~~-----~~a~Al---iiA~~gg~el~~~t~~~Y~~k~~~k----~s~li~a~v~~d~ 558 (1049)
T KOG0307|consen 491 DGLISEALITGDFKSAVELCLEAN-----KMADAL---IIAHAGGTELLESTRDKYLAKSNSK----LSRLIYAMVNRDL 558 (1049)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhh-----HHHHHH---HHHhcCCHHHHHHHHHHHHHHhCCh----HHHHHHHHHhhhH
Confidence 889999999999999999999998 888888 9999999999988776666533221 2234555555533
Q ss_pred HHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHH
Q 000703 1196 EACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVL 1275 (1342)
Q Consensus 1196 ~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~~~~~~~aa~~~~ 1275 (1342)
+..-..-+..+|+|+..+..+....++..++|.+.++||.+.+-....|++||+|+|+.++++.+-.+.+.-+.+.+-..
T Consensus 559 ~~~ve~~~~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~~~~~y~ 638 (1049)
T KOG0307|consen 559 DDYVETCEVKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLELAPTSYQ 638 (1049)
T ss_pred HHHHhhcchhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhcccccchHHHH
Confidence 33333344466999999999999889999999999999987774358999999999999999999988777767777777
Q ss_pred HHHHHhhhhhcccCCCCCCCCCccCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHhhhc
Q 000703 1276 ACREIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLC 1334 (1342)
Q Consensus 1276 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1334 (1342)
++.|..-+....+.- +++....-.. ..+.|-+|-+.|.-.+
T Consensus 639 ~~~e~l~~~~~~l~~---------------~~~~~~~s~~---l~~~~~~yanllasQG 679 (1049)
T KOG0307|consen 639 DLAEDLMELTLKLAQ---------------FSANKTYSAG---LAKKFSEYANLLASQG 679 (1049)
T ss_pred HHHHHHHHHHhhhhh---------------cccCccccHH---HHHHHHHHHHHHHhcC
Confidence 777777776654221 1111111122 5667999999886443
No 19
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=290.55 Aligned_cols=549 Identities=15% Similarity=0.166 Sum_probs=349.0
Q ss_pred CCCCCCceEeCCCC-eEEEEc-C--CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 23 SRNNFGSADLSPSG-LLAFAS-G--SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~--~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
|+....|++||++| .+|+|- + -.++||+...-..+..|..|+- .|+||+|+|.+
T Consensus 77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-----------~vtcvaFsp~~----------- 134 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-----------NVTCVAFSPGN----------- 134 (1080)
T ss_pred cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccc-----------cceeeeecCCC-----------
Confidence 55667899999999 899884 3 3799999988778888999996 99999999864
Q ss_pred CCCcEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE---
Q 000703 99 SSHLLLAAADR--HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW--- 173 (1342)
Q Consensus 99 p~g~~LASg~~--dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~--- 173 (1342)
.+|+|.+. |-.|.+||.+.......=.+ +. .|..++|+-++ .+.++.+ ...|++|.++.+++..
T Consensus 135 ---kyvvSVGsQHDMIVnv~dWr~N~~~asnki---ss-~Vsav~fsEdg---SYfvT~g-nrHvk~wyl~~~~Kykdpi 203 (1080)
T KOG1408|consen 135 ---KYVVSVGSQHDMIVNVNDWRVNSSGASNKI---SS-VVSAVAFSEDG---SYFVTSG-NRHVKLWYLQIQSKYKDPI 203 (1080)
T ss_pred ---cEEEeeccccceEEEhhhhhhccccccccc---ce-eEEEEEEccCC---ceeeeee-eeeEEEEEeeccccccCCc
Confidence 67888774 45677998865443332111 22 68999999887 5666655 6789999998665210
Q ss_pred ----------EEeC--------C---------------------------------CCceEEEEecCCCCCEEEEEeCCC
Q 000703 174 ----------KYDA--------S---------------------------------PEYLSCIRRNPFDARHFCVLGLKG 202 (1342)
Q Consensus 174 ----------~~~~--------~---------------------------------~~~v~~v~fsP~d~~~la~~s~dG 202 (1342)
.+.+ . +...+|++. ..+.++.++.+|
T Consensus 204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV---s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV---SSRLIACGCAKG 280 (1080)
T ss_pred cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee---ecceEEEeeccc
Confidence 0000 0 000123333 236788888999
Q ss_pred eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEc
Q 000703 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDL 282 (1342)
Q Consensus 203 ~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl 282 (1342)
.|+++....-.--....+.+...++...+.+.+.. .. .+.+..+| .++.|.|.|....+..+-.|+.++|||+
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~-~s-----~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDv 353 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPK-NS-----ESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDV 353 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhccccccc-cc-----ccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEec
Confidence 99997532200000111122211111111111110 00 12234455 5778999999877777778999999999
Q ss_pred cCCceeEEEe--cCCCccceEEE--EEc---------CCCCEEEEEeCCCcEEEEEccCCceeeeE----eecccccccc
Q 000703 283 QYETPLFSAA--LPRGCAKFLDV--LAD---------PNNDLLYCAHLDGKLSIWRRKEGEQVHVM----CTMEELIPSI 345 (1342)
Q Consensus 283 ~t~~~l~~~~--l~~~~~~~~~v--~~~---------pdg~~L~s~~~DgtI~lW~~~~g~~~~~~----~~~~~~~~~~ 345 (1342)
..-..++... +. +..-+++| .+| --...+.++++|+|||+|+...+....++ ...+- .
T Consensus 354 rD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l-~--- 428 (1080)
T KOG1408|consen 354 RDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL-S--- 428 (1080)
T ss_pred cccccccceeeeee-ccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh-h---
Confidence 8754432221 11 11223322 222 12346889999999999998753211111 00000 0
Q ss_pred cccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccc
Q 000703 346 GTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGD 425 (1342)
Q Consensus 346 g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~ 425 (1342)
.+.|. ++. .+.+-.....+. -..+....+.-++|.+..++++|++||+|..-|+++++++..-..
T Consensus 429 -------ki~y~----d~~-~q~~~d~~~~~f-dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-- 493 (1080)
T KOG1408|consen 429 -------KIPYE----DST-QQIMHDASAGIF-DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-- 493 (1080)
T ss_pred -------cCccc----cCc-hhhhhhccCCcc-cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh--
Confidence 11111 000 000100000000 001112344567888888889999999999999999999865321
Q ss_pred cccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceE
Q 000703 426 LQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVT 505 (1342)
Q Consensus 426 ~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt 505 (1342)
+..++.|.+.|-
T Consensus 494 --------------------------------------------------------------------~~~~eAHesEil 505 (1080)
T KOG1408|consen 494 --------------------------------------------------------------------TCFMEAHESEIL 505 (1080)
T ss_pred --------------------------------------------------------------------hhheecccceeE
Confidence 012456888999
Q ss_pred EEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEeeecCCCeEEEEEcCCC---cEEEEecCCc
Q 000703 506 MLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS---RLVSFSYSQV 581 (1342)
Q Consensus 506 ~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~gH~~~V~~l~fs~d~---~llS~s~d~~ 581 (1342)
|+.++-|.++ .++||+|+.|.-|.|+|+... .++.++.+|+..|++|.|...| +.++.+.|.
T Consensus 506 cLeyS~p~~~-------------~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk- 571 (1080)
T KOG1408|consen 506 CLEYSFPVLT-------------NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK- 571 (1080)
T ss_pred EEeecCchhh-------------hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch-
Confidence 9999876322 479999999999999999755 4678899999999999997655 788887763
Q ss_pred ccccCcccCEEEEEEcCC----CceeeeE-EeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCce
Q 000703 582 NEKSGGYINRLVVTCLRS----GINRAFR-VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF 656 (1342)
Q Consensus 582 ~~~sg~~~~~i~lwD~~t----G~~~~l~-~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~v 656 (1342)
...++... |. .+. ..+.-....+..+++.|.-++++++..|+.|+|+|+ .+++..+.|++.-
T Consensus 572 ----------simFr~~qk~~~g~--~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i-~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 572 ----------SIMFRVNQKASSGR--LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI-ESGKQVKSFKGSR 638 (1080)
T ss_pred ----------hhheehhccccCce--eccccccccccceEEEeeeCCCcceEEEEecccceEEEec-cccceeeeecccc
Confidence 22343321 32 121 000012246889999999999999999999999999 7999888876321
Q ss_pred EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe-c
Q 000703 657 TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV-H 735 (1342)
Q Consensus 657 t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv-~ 735 (1342)
..+ |.+-. -..+|.+-.+|+...|.++-++|. .
T Consensus 639 -----~~e---------------------------G~lIK--------------v~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 639 -----DHE---------------------------GDLIK--------------VILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred -----cCC---------------------------CceEE--------------EEECCCccEEEEeecCCceEEEEecc
Confidence 000 00000 011355678999999999999998 4
Q ss_pred CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCC
Q 000703 736 GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT 784 (1342)
Q Consensus 736 g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~t 784 (1342)
|..+-. +.||...|+.|-| |-++|++.+.||.|.||.+..
T Consensus 673 gEcvA~---------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GECVAQ---------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhhhh---------hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 544422 3478888999999 889999999999999999864
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=285.01 Aligned_cols=282 Identities=18% Similarity=0.269 Sum_probs=230.2
Q ss_pred eeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcE
Q 000703 494 DGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRL 573 (1342)
Q Consensus 494 ~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~l 573 (1342)
.-.+.||..+|+.+-++| .-.++|++++|++|++||..+|++.+.|.||+..|.+|+|...|++
T Consensus 101 ~~~l~g~r~~vt~v~~hp----------------~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~ 164 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP----------------SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKY 164 (406)
T ss_pred hhhhhccccceeeeeecc----------------CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccE
Confidence 334556899999999998 4679999999999999999999999999999999999999998865
Q ss_pred EE-EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec
Q 000703 574 VS-FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 574 lS-~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
+. ++.| -.+++||..+- .++++.+.+ |+..|.++.|-|.|.+++++++|.+|+.|++ .++-++++|
T Consensus 165 l~tcSsD----------l~~~LWd~~~~-~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD~tik~We~-~tg~cv~t~ 231 (406)
T KOG0295|consen 165 LATCSSD----------LSAKLWDFDTF-FRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRDNTIKAWEC-DTGYCVKTF 231 (406)
T ss_pred EEecCCc----------cchhheeHHHH-HHHHHHhcC-cccceeeEEEEecCCeeeecccccceeEEec-ccceeEEec
Confidence 54 3333 24899998653 235666556 8889999999999999999999999999999 799999988
Q ss_pred cCc---eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCE
Q 000703 653 ALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1342)
Q Consensus 653 ~~~---vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI 729 (1342)
..+ +..+.- ..++..+|+++.|.++
T Consensus 232 ~~h~ewvr~v~v----------------------------------------------------~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 232 PGHSEWVRMVRV----------------------------------------------------NQDGTIIASCSNDQTL 259 (406)
T ss_pred cCchHhEEEEEe----------------------------------------------------cCCeeEEEecCCCceE
Confidence 743 111111 1235788999999999
Q ss_pred EEEEecCCeeeccCCCCCCCccccccceEEEEee------------c-----CCEEEEEeCCCcEEEEECCCCc-eeeec
Q 000703 730 GVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY------------R-----LPHVVMGDRSGNIRWWDVTTGH-SSQFS 791 (1342)
Q Consensus 730 ~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~------------d-----g~~LasGs~DgtI~lWDl~tg~-~~~l~ 791 (1342)
++|-+..+..+. .|..|.-.|-+++| . |+++++|+.|++||+||+.+|. +.++.
T Consensus 260 ~vW~~~t~~~k~--------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 260 RVWVVATKQCKA--------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred EEEEeccchhhh--------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 999996653321 12245556777766 1 2599999999999999999998 67999
Q ss_pred cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEe
Q 000703 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG 871 (1342)
Q Consensus 792 ~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s 871 (1342)
||..+|+.++|+|. | ++|+++..|++++|||+++++++ .++ ..|. ..|.+++|+.+ .+ ++++|+
T Consensus 332 ghdnwVr~~af~p~--G----kyi~ScaDDktlrvwdl~~~~cm-k~~-~ah~--hfvt~lDfh~~-----~p-~VvTGs 395 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPG--G----KYILSCADDKTLRVWDLKNLQCM-KTL-EAHE--HFVTSLDFHKT-----AP-YVVTGS 395 (406)
T ss_pred cccceeeeeEEcCC--C----eEEEEEecCCcEEEEEeccceee-ecc-CCCc--ceeEEEecCCC-----Cc-eEEecc
Confidence 99999999999999 6 89999999999999999999866 344 4555 57999999986 55 578999
Q ss_pred CCCcEEEEE
Q 000703 872 ADSSFRLIE 880 (1342)
Q Consensus 872 ~DgtIrvWd 880 (1342)
-|.++++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999996
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-27 Score=272.90 Aligned_cols=275 Identities=14% Similarity=0.197 Sum_probs=213.3
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
+|.+|.|+|- -.++..+=-+|+|.|||..+-..+..|+.. ..||....|.+-. +.+++|+
T Consensus 15 RVKsVd~HPt--------------ePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRk---nWiv~Gs 74 (794)
T KOG0276|consen 15 RVKSVDFHPT--------------EPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARK---NWIVTGS 74 (794)
T ss_pred ceeeeecCCC--------------CceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeecc---ceEEEec
Confidence 9999999986 367888888999999999999888887553 3399999999865 7899999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000703 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1342)
.|..|+++|..|++++..+..|++.|.|++.+| ..-.+.+++.|.+|++||.... |... +
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~---------wa~~------q---- 134 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE---------WACE------Q---- 134 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc---------eeee------e----
Confidence 999999999999999999999999999999999 5567788899999999997542 2110 0
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccC-CCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000703 237 ELSAGAASLSPASGLFPLYMVKFTFSPH-WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1342)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~aFSpd-g~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1342)
...+|..+|++++|.|. ..+.++++.|++|+||.+....+..++..|..+.+.+.....+|
T Consensus 135 -----------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd------- 196 (794)
T KOG0276|consen 135 -----------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD------- 196 (794)
T ss_pred -----------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------
Confidence 11234558999999995 46789999999999999987665544432211111111100000
Q ss_pred eCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCccccc
Q 000703 316 HLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDD 395 (1342)
Q Consensus 316 ~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~ 395 (1342)
T Consensus 197 -------------------------------------------------------------------------------- 196 (794)
T KOG0276|consen 197 -------------------------------------------------------------------------------- 196 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCC
Q 000703 396 TLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRN 475 (1342)
Q Consensus 396 ~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~ 475 (1342)
+-.|+|+++|.+|++||.++..|.+
T Consensus 197 -----kpylIsgaDD~tiKvWDyQtk~CV~-------------------------------------------------- 221 (794)
T KOG0276|consen 197 -----KPYLISGADDLTIKVWDYQTKSCVQ-------------------------------------------------- 221 (794)
T ss_pred -----cceEEecCCCceEEEeecchHHHHH--------------------------------------------------
Confidence 2278888888888888887654422
Q ss_pred CCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEe
Q 000703 476 RPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF 555 (1342)
Q Consensus 476 ~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l 555 (1342)
.|+||...|.++.|+| .-+++++|++|||||||+..|-++.++|
T Consensus 222 --------------------TLeGHt~Nvs~v~fhp----------------~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 222 --------------------TLEGHTNNVSFVFFHP----------------ELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred --------------------HhhcccccceEEEecC----------------CCcEEEEecCCccEEEecCcceehhhhh
Confidence 2456888899999998 3689999999999999999999998888
Q ss_pred eecCCCeEEEEEcCCCcEEEEecCC
Q 000703 556 SVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1342)
Q Consensus 556 ~gH~~~V~~l~fs~d~~llS~s~d~ 580 (1342)
.-.-+.|.+|+-.++++.++.++|.
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEeccC
Confidence 8878899999987777667777764
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=5.2e-28 Score=258.69 Aligned_cols=292 Identities=13% Similarity=0.148 Sum_probs=239.7
Q ss_pred CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 129 PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 129 ~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
++||.+ .|.++.|++|. +.|++++.||.+.|||.-|..+++.++....-|..++|+| .+..+|.+|.|....+++
T Consensus 51 LkGH~~-Ki~~~~ws~Ds---r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLN-KIYAMDWSTDS---RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eccccc-ceeeeEecCCc---CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEe
Confidence 589998 99999999987 8999999999999999999999999988888999999999 999999999999999998
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCcee
Q 000703 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL 288 (1342)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l 288 (1342)
++....... .++++. ...|.+++-.+.|-+| .+|++++.|.+..+||+++|+.+
T Consensus 126 ls~~d~~g~--------------~~v~r~-----------l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 126 LSTRDAEGN--------------VRVSRE-----------LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred ccccccccc--------------ceeeee-----------ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 764211111 111111 2345667888899986 58999999999999999999999
Q ss_pred EEEecCCCccceEEEEEcC-CCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhh
Q 000703 289 FSAALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQ 367 (1342)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~ 367 (1342)
..+. +|.+.+.++...| +++.+++|+-|++.+|||++++.++++|.++|. .|.++.|-|+
T Consensus 180 ~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes------------DINsv~ffP~----- 240 (343)
T KOG0286|consen 180 QVFH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES------------DINSVRFFPS----- 240 (343)
T ss_pred EEec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc------------ccceEEEccC-----
Confidence 8876 4456677777788 999999999999999999999998888855433 5666666654
Q ss_pred hhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCc
Q 000703 368 NVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGT 447 (1342)
Q Consensus 368 ~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~ 447 (1342)
|..++++|+|++.+++|+..++.+..
T Consensus 241 ---------------------------------G~afatGSDD~tcRlyDlRaD~~~a~--------------------- 266 (343)
T KOG0286|consen 241 ---------------------------------GDAFATGSDDATCRLYDLRADQELAV--------------------- 266 (343)
T ss_pred ---------------------------------CCeeeecCCCceeEEEeecCCcEEee---------------------
Confidence 55899999999999999987653221
Q ss_pred ccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCC
Q 000703 448 NTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAV 527 (1342)
Q Consensus 448 ~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~ 527 (1342)
++.+. ...+|++++|+-
T Consensus 267 -------------ys~~~----------------------------------~~~gitSv~FS~---------------- 283 (343)
T KOG0286|consen 267 -------------YSHDS----------------------------------IICGITSVAFSK---------------- 283 (343)
T ss_pred -------------eccCc----------------------------------ccCCceeEEEcc----------------
Confidence 11000 135789999986
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEE
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTC 596 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD 596 (1342)
.|++|..|..|.++.|||.-.++.+..|.||...|.+|..+|||.-++ +|++|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~---------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA---------TGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE---------ecchhHheeecC
Confidence 589999999999999999999999999999999999999999997664 577888999993
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=5.5e-26 Score=270.30 Aligned_cols=566 Identities=15% Similarity=0.160 Sum_probs=376.1
Q ss_pred cccc---cccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCC
Q 000703 12 WDCN---FMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1342)
Q Consensus 12 ~~~~---~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~s~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1342)
.||+ ....+++.++.+.|++=..+ .+-.|+++.|.+|- .+ ...+++.+|.+ .|.-+. |
T Consensus 61 Yd~~kl~ll~vs~~lp~~I~alas~~~-~vy~A~g~~i~~~~--rgk~i~~~~~~~~a-----------~v~~l~--~-- 122 (910)
T KOG1539|consen 61 YDVNKLNLLFVSKPLPDKITALASDKD-YVYVASGNKIYAYA--RGKHIRHTTLLHGA-----------KVHLLL--P-- 122 (910)
T ss_pred EeccceEEEEecCCCCCceEEEEecCc-eEEEecCcEEEEEE--ccceEEEEeccccc-----------eEEEEe--e--
Confidence 4554 34566677777777776543 22235567888885 45 34577888887 777653 1
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEE----EEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEE
Q 000703 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVV----LWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSL 163 (1342)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~----~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1342)
=|..|.+++.++.+.||+..+++.. ..+ .+...+ .|+++. +|.-= =+.++.++.+|.++|
T Consensus 123 ------------fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~-~~~~~~-~Ital~-HP~TY-LNKIvvGs~~G~lql 186 (910)
T KOG1539|consen 123 ------------FGEHLIAVDISNILFVWKTSSIQEELYLQSTF-LKVEGD-FITALL-HPSTY-LNKIVVGSSQGRLQL 186 (910)
T ss_pred ------------ecceEEEEEccCcEEEEEecccccccccccee-eeccCC-ceeeEe-cchhh-eeeEEEeecCCcEEE
Confidence 2578999999999999999885211 111 122223 477764 55320 145677889999999
Q ss_pred EECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000703 164 YNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1342)
Q Consensus 164 Wd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1342)
||+++|+.++++......|+++.-+| --..+|.|..+|.|.++++.-+. .+..+.. .
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dk----il~sFk~------------d------ 243 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDK----ILMSFKQ------------D------ 243 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCc----EEEEEEc------------c------
Confidence 99999999999988889999999999 77899999999999998764421 1233321 1
Q ss_pred CCCCCCCcCccceEEEEEccCCCceEEEEcC-CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEE
Q 000703 244 SLSPASGLFPLYMVKFTFSPHWRHIIFVTFP-RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322 (1342)
Q Consensus 244 ~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d-~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~ 322 (1342)
.+.|.+++|.-||+-+++.+.. |.+.+|||+..+.+..+.- -+.+.+....++|....|++++.|.+++
T Consensus 244 ---------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 244 ---------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred ---------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCcee
Confidence 1348889999999988888765 8899999998888776642 1234455667788889999999999999
Q ss_pred EEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCcc
Q 000703 323 IWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKT 402 (1342)
Q Consensus 323 lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 402 (1342)
+|-..++.-...+ ++.-. ||..+..-+.| +..+|.
T Consensus 314 ~~vfD~~dg~pR~-----LR~R~------------------------------------GHs~Pp~~irf----y~~~g~ 348 (910)
T KOG1539|consen 314 VWVFDSGDGVPRL-----LRSRG------------------------------------GHSAPPSCIRF----YGSQGH 348 (910)
T ss_pred EEEeeCCCCcchh-----eeecc------------------------------------CCCCCchheee----eccCcE
Confidence 9976654311100 00001 11111111111 113478
Q ss_pred EEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCC
Q 000703 403 HLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTS 482 (1342)
Q Consensus 403 ~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~ 482 (1342)
.+.+++.|++.+.+++-.+..-+. ++. ....+.+.+ +...+
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~--------l~~--~~~~~~~kk---------~~~~~-------------------- 389 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQE--------LGQ--LHNKKRAKK---------VNVFS-------------------- 389 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHh--------hcc--ccccccccc---------ccccc--------------------
Confidence 999999999999888755433211 000 000111111 00000
Q ss_pred cccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE-EEEee-----
Q 000703 483 SQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV-TASFS----- 556 (1342)
Q Consensus 483 ~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~-~~~l~----- 556 (1342)
..++ --.+|+.+++.-. | +.. ....++.--.+-.++.|+...... ...|.
T Consensus 390 -----~~~~--------k~p~i~~fa~~~~-------R-E~~---W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 390 -----TEKL--------KLPPIVEFAFENA-------R-EKE---WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred -----hhhh--------cCCcceeeecccc-------h-hhh---hcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 0000 0124555554320 0 012 234555555667899999876544 22222
Q ss_pred ecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCC
Q 000703 557 VHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAP 636 (1342)
Q Consensus 557 gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~t 636 (1342)
.-...+++++.++.|.|+-.+++ .++|-++++.+|..+.--.-...|..+|++++....++.+++++.+|-
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S---------~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYS---------KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred ccCcceEEEEEeccCceEEEecc---------CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence 12367899999999988866654 358999999999733111001248899999999999999999999999
Q ss_pred EEEEeccCCcceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCC
Q 000703 637 VEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQD 714 (1342)
Q Consensus 637 IkvWDl~kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~ 714 (1342)
++.||. +...++..+. ..++.+..+
T Consensus 517 lkfw~f-~~k~l~~~l~l~~~~~~iv~h---------------------------------------------------- 543 (910)
T KOG1539|consen 517 LKFWDF-KKKVLKKSLRLGSSITGIVYH---------------------------------------------------- 543 (910)
T ss_pred EEEEec-CCcceeeeeccCCCcceeeee----------------------------------------------------
Confidence 999999 6766665543 122222111
Q ss_pred CCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeecc
Q 000703 715 DTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFST 792 (1342)
Q Consensus 715 ~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~~ 792 (1342)
-..+.||.+..|=.|+++|+..+++.. .|.||.+.|++++| ||++|++++.|++||+||+.++.+.---.
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR--------~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVR--------EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhH--------HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 113567888899999999997666521 24589999999999 99999999999999999999998544333
Q ss_pred ccccEEEEEEecCCCCCCCCCEEEEEECC-CeEEEEE
Q 000703 793 HREGIRRIKFSPVVPGDRSRGRIAVLFHD-NTFSVFD 828 (1342)
Q Consensus 793 H~~~V~~v~fSPd~~g~~~~~~Las~s~D-gtI~IWD 828 (1342)
-..+++++.|||+ | .+||+...| .-|.+|-
T Consensus 616 vd~~~~sls~SPn--g----D~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 VDSPCTSLSFSPN--G----DFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcceeeEECCC--C----CEEEEEEecCceEEEEE
Confidence 4688999999999 6 799999877 6688885
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=269.09 Aligned_cols=246 Identities=18% Similarity=0.300 Sum_probs=203.4
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEec
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~ 578 (1342)
.|.+||++|++.- .|.+|++|+.||++.|||..+|.+...|.-|+.+--+|.|-.+..|++.+.
T Consensus 274 ~HkgPI~slKWnk----------------~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t 337 (524)
T KOG0273|consen 274 QHKGPIFSLKWNK----------------KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST 337 (524)
T ss_pred ccCCceEEEEEcC----------------CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence 4889999999986 589999999999999999999999999999998878899999989987665
Q ss_pred CCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---Cc
Q 000703 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---LP 655 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~---~~ 655 (1342)
+ +.|.|.-+--. +|..++.| |..+|.+|.|.|.|..|+++|.|+|+|||++ +...+.+.|. +.
T Consensus 338 d----------~~i~V~kv~~~--~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~-~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 338 D----------GCIHVCKVGED--RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSM-GQSNSVHDLQAHSKE 403 (524)
T ss_pred C----------ceEEEEEecCC--Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeec-CCCcchhhhhhhccc
Confidence 4 47888876433 37777777 8899999999999999999999999999998 5655554443 44
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
+..+.|+|.+.
T Consensus 404 i~t~~wsp~g~--------------------------------------------------------------------- 414 (524)
T KOG0273|consen 404 IYTIKWSPTGP--------------------------------------------------------------------- 414 (524)
T ss_pred eeeEeecCCCC---------------------------------------------------------------------
Confidence 66677776420
Q ss_pred CCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCE
Q 000703 736 GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 736 g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~ 814 (1342)
++.-.+++..|++++.|++|++||+..|. +++|..|+.+|++|+|||+ | .+
T Consensus 415 ----------------------v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~--g----~y 466 (524)
T KOG0273|consen 415 ----------------------VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN--G----RY 466 (524)
T ss_pred ----------------------ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC--C----cE
Confidence 00000156689999999999999999998 7899999999999999999 5 89
Q ss_pred EEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 815 IAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 815 Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+|+++.||.|.||++++++ +.+.. + .++.|+.+.|+.+ |+ .|..+-.||.++|.|++
T Consensus 467 lAsGs~dg~V~iws~~~~~-l~~s~-~---~~~~Ifel~Wn~~----G~--kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGK-LVKSY-Q---GTGGIFELCWNAA----GD--KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCCeeEeccccchh-eeEee-c---CCCeEEEEEEcCC----CC--EEEEEecCCCceEEEec
Confidence 9999999999999999998 54554 2 2356999999987 66 46777889999999976
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.2e-27 Score=250.70 Aligned_cols=234 Identities=15% Similarity=0.148 Sum_probs=192.3
Q ss_pred CcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-----CCeEEEEe
Q 000703 53 SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-----LRSVVLWI 127 (1342)
Q Consensus 53 s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~-----~g~~~~~l 127 (1342)
...+..+|++|++ .|+.++-.+.+ ...|.|+++|.+|++|++. .|..++.
T Consensus 4 ~l~l~~tl~gh~d-----------~Vt~la~~~~~-------------~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~- 58 (315)
T KOG0279|consen 4 QLVLRGTLEGHTD-----------WVTALAIKIKN-------------SDILVSASRDKTIIVWKLTSDDIKYGVPVRR- 58 (315)
T ss_pred hheeeeeecCCCc-----------eEEEEEeecCC-------------CceEEEcccceEEEEEEeccCccccCceeee-
Confidence 3456678999999 99999999874 4689999999999999874 3556666
Q ss_pred cCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEE
Q 000703 128 DPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1342)
Q Consensus 128 ~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~ 207 (1342)
+.||+. -|.++..++++ .+.++++.|+++++||+.+|++...+.+|...|.+++|+| |.+++++++.|.+|++|
T Consensus 59 -~~GHsH-~v~dv~~s~dg---~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 59 -LTGHSH-FVSDVVLSSDG---NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLW 132 (315)
T ss_pred -eeccce-EecceEEccCC---ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeee
Confidence 478988 89999999987 8999999999999999999999999999999999999999 99999999999999999
Q ss_pred EecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC--CCceEEEEcCCeEEEEEccCC
Q 000703 208 RVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH--WRHIIFVTFPRELVVFDLQYE 285 (1342)
Q Consensus 208 d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpd--g~~ll~~~~d~~I~iwDl~t~ 285 (1342)
+..+. .++.+. ...+...|..++|+|. ...|++++.|++|++||+.+-
T Consensus 133 nt~g~-------ck~t~~-----------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 133 NTLGV-------CKYTIH-----------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred eeccc-------EEEEEe-----------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 87652 223221 0111446788899999 678999999999999999988
Q ss_pred ceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccC
Q 000703 286 TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQS 362 (1342)
Q Consensus 286 ~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~ 362 (1342)
+....+..| ..-+..+.++|||..+++|+.||.+.|||+.+++++..+ +. ...|.+.+|+|.
T Consensus 183 ~l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---~a----------~~~v~sl~fspn 244 (315)
T KOG0279|consen 183 QLRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---EA----------FDIVNSLCFSPN 244 (315)
T ss_pred chhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---cC----------CCeEeeEEecCC
Confidence 877766543 345667888999999999999999999999999865554 11 014667777765
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.7e-28 Score=265.59 Aligned_cols=301 Identities=19% Similarity=0.295 Sum_probs=210.3
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEc-CCC---cEEE
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWL-GNS---RLVS 575 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs-~d~---~llS 575 (1342)
|..+|.+|... ++.|.+|+.||+++|||. .|++.+++.||+++|++++|. ++. .|++
T Consensus 104 hdDWVSsv~~~------------------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 104 HDDWVSSVKGA------------------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred chhhhhhhccc------------------CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEE
Confidence 66777776654 368999999999999997 589999999999999999993 444 4777
Q ss_pred EecCCcccccCcccCEEEEEEcCCCcee--eeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINR--AFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~--~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~ 653 (1342)
++-| .++++|-.+.|+.+ .+...+| |..+|.+|...++|..+++||.|.+|+||+.. + ..-.+++
T Consensus 165 as~D----------qtl~Lw~~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~-~-~~~~~~E 231 (423)
T KOG0313|consen 165 ASMD----------QTLRLWKWNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE-T-DEEDELE 231 (423)
T ss_pred ecCC----------ceEEEEEecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccC-C-Ccccccc
Confidence 6654 48999998877642 2222235 99999999999999999999999999999941 1 1111111
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCc-cccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEE
Q 000703 654 LPFTVLEWTLPTVPWPSQTGPSRQ-SSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1342)
Q Consensus 654 ~~vt~l~wsp~~~~~~~~~~~~k~-~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lw 732 (1342)
.+ +- ..+ +++ .-.+...+. ...+...|...+.+. ...+.+.+.++++|.+|++|
T Consensus 232 -~~-----s~--~rr------k~~~~~~~~~~r~---------P~vtl~GHt~~Vs~V--~w~d~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 232 -SS-----SN--RRR------KKQKREKEGGTRT---------PLVTLEGHTEPVSSV--VWSDATVIYSVSWDHTIKVW 286 (423)
T ss_pred -cc-----ch--hhh------hhhhhhhcccccC---------ceEEecccccceeeE--EEcCCCceEeecccceEEEE
Confidence 00 00 000 000 000000000 000001111111110 11234567899999999999
Q ss_pred EecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc----eeeeccccccEEEEEEecCC
Q 000703 733 EVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHREGIRRIKFSPVV 806 (1342)
Q Consensus 733 dv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~----~~~l~~H~~~V~~v~fSPd~ 806 (1342)
|+......+- . ......+++++ ..++|++|+.|..|++||.+++. ..+|.||+++|.+|.|+|..
T Consensus 287 Dletg~~~~~---~------~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 287 DLETGGLKST---L------TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred Eeecccceee---e------ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 9964443221 0 11235788888 77899999999999999999875 35789999999999999984
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCC-cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 807 PGDRSRGRIAVLFHDNTFSVFDLDSQD-PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 807 ~g~~~~~~Las~s~DgtI~IWDl~t~~-~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
. ..|+++++|+++++||+++.. ++ ..+ .+|. ..|++++|... . .|++||.|++||++.-.
T Consensus 358 ~-----~~~~S~S~D~t~klWDvRS~k~pl-ydI-~~h~--DKvl~vdW~~~-----~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 E-----FQLVSGSYDNTVKLWDVRSTKAPL-YDI-AGHN--DKVLSVDWNEG-----G--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred c-----eEEEEEecCCeEEEEEeccCCCcc-eee-ccCC--ceEEEEeccCC-----c--eEEeccCcceEEEeccc
Confidence 3 468999999999999999887 44 344 5664 78999999852 3 68999999999999743
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=250.46 Aligned_cols=262 Identities=15% Similarity=0.176 Sum_probs=217.4
Q ss_pred ccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCc
Q 000703 13 DCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1342)
Q Consensus 13 ~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1342)
-|.+|++-+. ..|+++...|++ .||.|+...|+++|.++.. .+.++++|+. .|++|.|.-+
T Consensus 31 ~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----------NVtaVgF~~d--- 94 (311)
T KOG0315|consen 31 ICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----------NVTAVGFQCD--- 94 (311)
T ss_pred eEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----------ceEEEEEeec---
Confidence 3888998864 469999999998 8999999999999998865 5899999998 9999999976
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC
Q 000703 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1342)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1342)
|++++||+.||+|+|||++...+.+.+. |.. +|+++...|+. .-|.++..++.|++||+.+.
T Consensus 95 -----------grWMyTgseDgt~kIWdlR~~~~qR~~~---~~s-pVn~vvlhpnQ---teLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 -----------GRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNS-PVNTVVLHPNQ---TELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred -----------CeEEEecCCCceEEEEeccCcccchhcc---CCC-CcceEEecCCc---ceEEeecCCCcEEEEEccCC
Confidence 6899999999999999999988877763 345 99999999987 66888999999999999877
Q ss_pred eEEEEEeC-CCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000703 170 SCMWKYDA-SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1342)
Q Consensus 170 ~~i~~~~~-~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1342)
.+...+.- ....+.++...| |+.+++++...|..++|++..+-. .+.+..+.+
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~-------------~s~l~P~~k------------ 210 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQT-------------ASELEPVHK------------ 210 (311)
T ss_pred ccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCc-------------cccceEhhh------------
Confidence 66655432 235788999999 999999999999999999865211 001111111
Q ss_pred CCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 249 SGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 249 ~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
...+..++++|.||||+++|++++.|.+++||++++- ....+.+.+|..-+.+++|+.||.+|++++.|+.+|+|+...
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 1235668999999999999999999999999999987 445556666667788999999999999999999999999998
Q ss_pred CceeeeE
Q 000703 329 GEQVHVM 335 (1342)
Q Consensus 329 g~~~~~~ 335 (1342)
++.+...
T Consensus 290 ~k~v~qy 296 (311)
T KOG0315|consen 290 GKEVRQY 296 (311)
T ss_pred Cceeeec
Confidence 8876655
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.5e-29 Score=269.69 Aligned_cols=268 Identities=21% Similarity=0.291 Sum_probs=212.7
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~ 580 (1342)
+..|+|+.+. ...+++|..|.||+|||..+-.+.+.|.||++.|.++.|..- -++|
T Consensus 197 skgVYClQYD------------------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viis----- 252 (499)
T KOG0281|consen 197 SKGVYCLQYD------------------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVS----- 252 (499)
T ss_pred CCceEEEEec------------------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEe-----
Confidence 4678998864 357889999999999999999999999999999999998543 3343
Q ss_pred cccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcce---eeeccC---
Q 000703 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM---LRSLAL--- 654 (1342)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~---l~~l~~--- 654 (1342)
|+.|.+|+|||++||+ ++.++-+ |...|-.++|+. .|++++|+|.++.|||+ ..+.- .+.+-+
T Consensus 253 -----GSSDsTvrvWDv~tge--~l~tlih-HceaVLhlrf~n--g~mvtcSkDrsiaVWdm-~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 253 -----GSSDSTVRVWDVNTGE--PLNTLIH-HCEAVLHLRFSN--GYMVTCSKDRSIAVWDM-ASPTDITLRRVLVGHRA 321 (499)
T ss_pred -----cCCCceEEEEeccCCc--hhhHHhh-hcceeEEEEEeC--CEEEEecCCceeEEEec-cCchHHHHHHHHhhhhh
Confidence 3445699999999999 7777655 888999999984 69999999999999999 45432 222221
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 655 ~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
.|+.+.|+ ...+++++.|.+|++|++
T Consensus 322 aVNvVdfd------------------------------------------------------~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 322 AVNVVDFD------------------------------------------------------DKYIVSASGDRTIKVWST 347 (499)
T ss_pred heeeeccc------------------------------------------------------cceEEEecCCceEEEEec
Confidence 23334332 247889999999999999
Q ss_pred c-CCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCC
Q 000703 735 H-GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSR 812 (1342)
Q Consensus 735 ~-g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~ 812 (1342)
. +..++. +.+|..-|.|+.+.|+++|+|++|.+|++||+..|. ++.+.||+.-|++|+|.-
T Consensus 348 st~efvRt---------l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-------- 410 (499)
T KOG0281|consen 348 STCEFVRT---------LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-------- 410 (499)
T ss_pred cceeeehh---------hhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--------
Confidence 5 444543 236777899999999999999999999999999998 678899999999999952
Q ss_pred CEEEEEECCCeEEEEECCCCCc--------ccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 813 GRIAVLFHDNTFSVFDLDSQDP--------LANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 813 ~~Las~s~DgtI~IWDl~t~~~--------l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
++|+++++||+|+|||+.++.. +..++ ..| .+.|+.+.|-.- .|++.+.|.+|-|||....
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~h--sgRVFrLQFD~f--------qIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEH--SGRVFRLQFDEF--------QIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhh-hhc--cceeEEEeecce--------EEEeccCCCeEEEEEcCCC
Confidence 6899999999999999987652 11222 233 368999999542 6789999999999998644
Q ss_pred c
Q 000703 885 E 885 (1342)
Q Consensus 885 ~ 885 (1342)
.
T Consensus 480 ~ 480 (499)
T KOG0281|consen 480 P 480 (499)
T ss_pred C
Confidence 3
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=248.28 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=220.0
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC---cEEEEe-eecCCCeEEEEEc
Q 000703 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN---AVTASF-SVHNGTVRGLRWL 568 (1342)
Q Consensus 493 l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg---~~~~~l-~gH~~~V~~l~fs 568 (1342)
+...++||.+.+..++++|. .|.+||+++.|..||||+...+ .+...+ .+|+..||+++|+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~---------------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPG---------------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred eEEeecCCCCcEEEEEeccC---------------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec
Confidence 34467889999999999991 2669999999999999999743 344444 4899999999999
Q ss_pred CCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc--
Q 000703 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP-- 646 (1342)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~-- 646 (1342)
|.|++++. +++|.++.||--..++-.++.++.| |+..|.+++||++|.|||++++|+.|-||.+. ..
T Consensus 71 p~g~~La~---------aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddE 139 (312)
T KOG0645|consen 71 PHGRYLAS---------ASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDE 139 (312)
T ss_pred CCCcEEEE---------eeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCc
Confidence 99987753 3456689999988887778888888 89999999999999999999999999999983 32
Q ss_pred -ceeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEE
Q 000703 647 -IMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1342)
Q Consensus 647 -~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~ 722 (1342)
.++..+. +.|..+.|+|. .++|++
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt----------------------------------------------------~dlL~S 167 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPT----------------------------------------------------EDLLFS 167 (312)
T ss_pred EEEEeeeccccccccEEEEcCC----------------------------------------------------cceeEE
Confidence 2333332 23556778753 367899
Q ss_pred EecCCCEEEEEec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccccccEEE
Q 000703 723 ALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRR 799 (1342)
Q Consensus 723 ~~~DgtI~lwdv~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~ 799 (1342)
++.|++|++|.-. +..-.- .. .+.+|.+.|.+++| .|..|++++.|++++||-..+.-. ..|++.++.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c-~~-----tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~ 238 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWEC-VQ-----TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYD 238 (312)
T ss_pred eccCCeEEEEeecCCCCeeE-EE-----EecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEe
Confidence 9999999999865 332100 00 12367788999999 688999999999999998653221 348899999
Q ss_pred EEEecCCCCCCCCCEEEEEECCCeEEEEECCCC--Cccccccc-CCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcE
Q 000703 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ--DPLANSLL-QPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSF 876 (1342)
Q Consensus 800 v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~--~~l~~~l~-~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtI 876 (1342)
|.|- + +.||+++.|+.|+|+.-... ++..+.+. ..+.|+..|.++.|.|. ..+ .|+++|.||.|
T Consensus 239 v~W~-~-------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~---~~~--~L~s~~DDG~v 305 (312)
T KOG0645|consen 239 VPWD-N-------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK---VSN--RLASGGDDGIV 305 (312)
T ss_pred eeec-c-------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC---CCC--ceeecCCCceE
Confidence 9997 5 57999999999999965432 12111111 12234468999999994 123 57899999999
Q ss_pred EEEEcc
Q 000703 877 RLIEVN 882 (1342)
Q Consensus 877 rvWdi~ 882 (1342)
++|.+.
T Consensus 306 ~~W~l~ 311 (312)
T KOG0645|consen 306 NFWELE 311 (312)
T ss_pred EEEEec
Confidence 999875
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=6.4e-27 Score=263.64 Aligned_cols=327 Identities=13% Similarity=0.148 Sum_probs=239.4
Q ss_pred EeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000703 175 YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1342)
Q Consensus 175 ~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1342)
...|..+|.+.+|+|.+...+++++.+-..++|++....... ..+...++-....++ ......
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~-------------~~q~~lrh~~~~~~~----s~~~nk 236 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIG-------------STQLVLRHCIREGGK----SVPSNK 236 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhcccc-------------chhhhhhhhhhhhcc----cCCccC
Confidence 334677899999999877799999999999999875311110 011111111110010 011233
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
.|..++++.+|..|+++.+||+++||+.. |..+.++. .+.+|+.++-+..+|.+|++++.||++.|||..+|++...
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 57888999999999999999999999986 55555554 4568999999999999999999999999999988874433
Q ss_pred EeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEE
Q 000703 335 MCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVW 414 (1342)
Q Consensus 335 ~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~ 414 (1342)
+. .++ .|. +|+++ .. ...+++.+.||.|.
T Consensus 314 f~-~~s-------------------~~~---------------------lDVdW------~~----~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 314 FE-FHS-------------------APA---------------------LDVDW------QS----NDEFATSSTDGCIH 342 (524)
T ss_pred ee-ecc-------------------CCc---------------------cceEE------ec----CceEeecCCCceEE
Confidence 31 000 000 01111 00 24889999999999
Q ss_pred EEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEe
Q 000703 415 NWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLD 494 (1342)
Q Consensus 415 lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 494 (1342)
+..+.... | .
T Consensus 343 V~kv~~~~-------------------------P-~-------------------------------------------- 352 (524)
T KOG0273|consen 343 VCKVGEDR-------------------------P-V-------------------------------------------- 352 (524)
T ss_pred EEEecCCC-------------------------c-c--------------------------------------------
Confidence 98764321 1 0
Q ss_pred eeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEE
Q 000703 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLV 574 (1342)
Q Consensus 495 g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~ll 574 (1342)
+.+.||.++|.+|.|.| .+.+|++++.|+|++||+...+.....|.+|+..|..+.|+|.|...
T Consensus 353 ~t~~GH~g~V~alk~n~----------------tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~ 416 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNP----------------TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT 416 (524)
T ss_pred eeeecccCceEEEEECC----------------CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence 12346899999999998 58999999999999999998888899999999999999999876322
Q ss_pred EEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc-
Q 000703 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA- 653 (1342)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~- 653 (1342)
.-..+.....+...++++++||+..|. ++.++.+ |..||.+++|||+|+|+|+|+.|+.|.+|+. +++++++++.
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~-~~~~l~~s~~~ 492 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGV--PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWST-KTGKLVKSYQG 492 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCc--eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccc-cchheeEeecC
Confidence 111111111122345699999999998 7777766 8999999999999999999999999999999 8999999876
Q ss_pred -CceEEEEEc
Q 000703 654 -LPFTVLEWT 662 (1342)
Q Consensus 654 -~~vt~l~ws 662 (1342)
+.|..+.|+
T Consensus 493 ~~~Ifel~Wn 502 (524)
T KOG0273|consen 493 TGGIFELCWN 502 (524)
T ss_pred CCeEEEEEEc
Confidence 345778897
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=247.76 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=243.7
Q ss_pred ccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 15 NFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 15 ~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
.++|.| |-..+.+++|++|. .|++++ ++.+.|||.-+....+.++.+.. .|-.++|+|.
T Consensus 48 rr~LkG--H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----------WVMtCA~sPS------ 108 (343)
T KOG0286|consen 48 RRTLKG--HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----------WVMTCAYSPS------ 108 (343)
T ss_pred EEEecc--cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce-----------eEEEEEECCC------
Confidence 378999 45568999999998 888887 57999999999988899999887 9999999975
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDFRLR----SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS 168 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~~~g----~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t 168 (1342)
|..+|.|+-|...-|+++.+. .....-++.+|++ -+.++.|..| ..|+++++|.+..+||+++
T Consensus 109 --------g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~dD----~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 109 --------GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLDD----NHILTGSGDMTCALWDIET 175 (343)
T ss_pred --------CCeEEecCcCceeEEEecccccccccceeeeeecCccc-eeEEEEEcCC----CceEecCCCceEEEEEccc
Confidence 689999999999999999754 2222223689998 7999999875 4678999999999999999
Q ss_pred CeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000703 169 ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1342)
Q Consensus 169 g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1342)
|+.+..+.+|...|.+++++|.+++.+++++.|..-++||++.... .+.|
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qtF-------------------------- 225 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQTF-------------------------- 225 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEee--------------------------
Confidence 9999999999999999999999999999999999999999865211 1212
Q ss_pred CCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 249 SGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 249 ~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
.++...|.+++|.|+|--+++++.|++.++||+...+.+..+..+.--.++.+++|+..|++|++|-.|.++-+||.-.
T Consensus 226 -~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 226 -EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred -cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 2345578899999999999999999999999999999988876544446789999999999999999999999999887
Q ss_pred CceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEE
Q 000703 329 GEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISIS 408 (1342)
Q Consensus 329 g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s 408 (1342)
++.+..+.++|. +|.-+.++|+ |..++++|
T Consensus 305 ~e~vg~L~GHeN------------RvScl~~s~D--------------------------------------G~av~TgS 334 (343)
T KOG0286|consen 305 GERVGVLAGHEN------------RVSCLGVSPD--------------------------------------GMAVATGS 334 (343)
T ss_pred cceEEEeeccCC------------eeEEEEECCC--------------------------------------CcEEEecc
Confidence 886666644433 5555555554 67999999
Q ss_pred cCCcEEEEE
Q 000703 409 DDGKVWNWL 417 (1342)
Q Consensus 409 ~DG~v~lWd 417 (1342)
-|.++++|.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999993
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.3e-24 Score=245.96 Aligned_cols=526 Identities=14% Similarity=0.140 Sum_probs=343.3
Q ss_pred CCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEE
Q 000703 27 FGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1342)
Q Consensus 27 ~~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1342)
.+.+-|-|.|-+.|-.-+.+++++.+.. ..+.+-||.. .|.|+..+|+ .-++|+
T Consensus 68 R~Nly~lptgE~vyfvA~V~Vl~n~ee~-~Qr~y~GH~d-----------dikc~~vHPd--------------ri~vat 121 (626)
T KOG2106|consen 68 RNNLYLLPTGELVYFVAAVGVLYNWEER-SQRHYLGHND-----------DIKCMAVHPD--------------RIRVAT 121 (626)
T ss_pred eceeEEccCccEEEEeccEEEEEeehhh-hcccccCCCC-----------ceEEEeecCC--------------ceeecc
Confidence 4567788999667766677788887652 2234679998 9999999986 367888
Q ss_pred EeCCC--------cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEE--eCCCeEEEEECCCCeEEEEEe
Q 000703 107 ADRHG--------RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI--NGPSVLSLYNTTSASCMWKYD 176 (1342)
Q Consensus 107 g~~dG--------~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~--s~d~~i~lWd~~tg~~i~~~~ 176 (1342)
|-..| .|+|||..+-..++.+. .... +|.+++|++...+ .+|+.. +.+..+.+||.+.+.......
T Consensus 122 GQ~ag~~g~~~~phvriWdsv~L~TL~V~g--~f~~-GV~~vaFsk~~~G-~~l~~vD~s~~h~lSVWdWqk~~~~~~vk 197 (626)
T KOG2106|consen 122 GQGAGTSGRPLQPHVRIWDSVTLSTLHVIG--FFDR-GVTCVAFSKINGG-SLLCAVDDSNPHMLSVWDWQKKAKLGPVK 197 (626)
T ss_pred CcccccCCCcCCCeeeecccccceeeeeec--cccc-cceeeeecccCCC-ceEEEecCCCccccchhhchhhhccCcce
Confidence 87666 49999988877777764 2334 8999999997643 566665 456789999999888777766
Q ss_pred CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
...+.+....|.|-|+..++++|. |-+.+|+..+.+- .|+--+ .++ . ...+|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l----~k~~~~---------fek-------------~-ekk~V 249 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSL----VKRQGI---------FEK-------------R-EKKFV 249 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCce----EEEeec---------ccc-------------c-cceEE
Confidence 667889999999999898888874 8899998765321 222111 111 0 11468
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEe
Q 000703 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1342)
Q Consensus 257 ~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1342)
++++|.++| .++++-.+|.|.||+..+.+.....- -+.+.+..+..-.+|. |+||+.|..|.+||-. ...++.
T Consensus 250 l~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~-- 322 (626)
T KOG2106|consen 250 LCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRE-- 322 (626)
T ss_pred EEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCcc-EeecCccceEEecccc-cccccc--
Confidence 999999998 57899999999999998776655443 2345566666667786 5569999999999821 111111
Q ss_pred ecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEE
Q 000703 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1342)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lW 416 (1342)
..+|-.-. .+-.++ +++.-|..+..-..|..
T Consensus 323 ---~elPe~~G-----~iRtv~----------------------------------------e~~~di~vGTtrN~iL~- 353 (626)
T KOG2106|consen 323 ---TELPEQFG-----PIRTVA----------------------------------------EGKGDILVGTTRNFILQ- 353 (626)
T ss_pred ---ccCchhcC-----CeeEEe----------------------------------------cCCCcEEEeeccceEEE-
Confidence 11120000 000000 00101222211111110
Q ss_pred EcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeee
Q 000703 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1342)
Q Consensus 417 dl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1342)
|. .+-.+.+ .
T Consensus 354 -----------------------------Gt---------------------------------------~~~~f~~--~ 363 (626)
T KOG2106|consen 354 -----------------------------GT---------------------------------------LENGFTL--T 363 (626)
T ss_pred -----------------------------ee---------------------------------------ecCCceE--E
Confidence 00 0000122 2
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~ 576 (1342)
.+||......++.+| ...++++++.|++++||+ ..++.-+.. -..++.++.|.|.| .++.
T Consensus 364 v~gh~delwgla~hp----------------s~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 364 VQGHGDELWGLATHP----------------SKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAV 423 (626)
T ss_pred EEecccceeeEEcCC----------------ChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEE
Confidence 346778888899888 467899999999999999 344433221 23678899999988 4443
Q ss_pred ecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--- 653 (1342)
+. ..+...|.|.++.....+ +. +..++++++|+|+|.+||+|+.|+.|.||-+.+++..+....
T Consensus 424 Gt---------~~G~w~V~d~e~~~lv~~---~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 424 GT---------ATGRWFVLDTETQDLVTI---HT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred ee---------ccceEEEEecccceeEEE---Ee-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 32 235778889888553333 33 468999999999999999999999999999865665544332
Q ss_pred -CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEE
Q 000703 654 -LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1342)
Q Consensus 654 -~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lw 732 (1342)
.+++.+.|++++.+ +.+.+.|-.|..|
T Consensus 491 gs~ithLDwS~Ds~~----------------------------------------------------~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQF----------------------------------------------------LVSNSGDYEILYW 518 (626)
T ss_pred CceeEEeeecCCCce----------------------------------------------------EEeccCceEEEEE
Confidence 46899999977432 1222222222233
Q ss_pred Eec----CCeeeccCCCCCCC-------ccc---cccceEEEEeecCCEEEEEeCCCcEEEEECCCCc----eeeecccc
Q 000703 733 EVH----GRRIRDFRPKWPSS-------SFI---SSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHR 794 (1342)
Q Consensus 733 dv~----g~~v~d~~~~~~~~-------~~~---~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~----~~~l~~H~ 794 (1342)
... ...++|. +|... .|- +.+..+++.+-+.++||+|+..|+|+++...--+ .+.+.+|.
T Consensus 519 ~~~~~~~~ts~kDv--kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs 596 (626)
T KOG2106|consen 519 KPSECKQITSVKDV--KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS 596 (626)
T ss_pred ccccCcccceecce--eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc
Confidence 110 0011111 00000 000 1122233344478899999999999999886432 56789999
Q ss_pred ccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEEC
Q 000703 795 EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1342)
Q Consensus 795 ~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl 829 (1342)
+.|++|+|+-+ . ..+++.+.|..|..|++
T Consensus 597 ~~vt~V~Fl~~--d----~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFLCK--D----SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEeeC--C----ceEEecCCCceEEEEEe
Confidence 99999999976 2 56777779999999986
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-28 Score=267.36 Aligned_cols=298 Identities=14% Similarity=0.105 Sum_probs=229.7
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEecCCCC
Q 000703 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV-VLWIDPDPN 132 (1342)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~-~~~l~~~~h 132 (1342)
.+..++|..|+. .|.-++|||+ |.+||||+.|.+++||++..-.. .....+.||
T Consensus 214 ~qt~qil~~htd-----------EVWfl~FS~n--------------GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh 268 (519)
T KOG0293|consen 214 SQTWQILQDHTD-----------EVWFLQFSHN--------------GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH 268 (519)
T ss_pred chhhhhHhhCCC-----------cEEEEEEcCC--------------CeeEeeccCCceEEEEEEecCcceeeeeeeecc
Confidence 456788999998 9999999976 68899999999999999754332 222224789
Q ss_pred CCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCC-CCceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~-~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
.. +|..+.||||+ ++|++|+.|..+++||+.||.+...+... ...+.+++|-| |+.++++|+.|+.+..||..+
T Consensus 269 ~~-~V~yi~wSPDd---ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 269 SQ-PVSYIMWSPDD---RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred cC-ceEEEEECCCC---CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc
Confidence 98 99999999987 89999999999999999999998877653 35788999999 999999999999999999766
Q ss_pred CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEE
Q 000703 212 QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSA 291 (1342)
Q Consensus 212 ~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~ 291 (1342)
.. ... |.+. .. -.+..++.++||+.+++...|..|++++.++...++.+
T Consensus 344 n~-----~~~----------------W~gv---------r~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 344 NI-----LGN----------------WEGV---------RD-PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred ch-----hhc----------------cccc---------cc-ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 31 111 2110 00 13667899999999999999999999999988776655
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhh
Q 000703 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAK 371 (1342)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k 371 (1342)
..+ .++.++..+.||+++..--.|..|.+||.++...+..+.|+.. |
T Consensus 393 se~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-----~------------------------- 439 (519)
T KOG0293|consen 393 SEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-----G------------------------- 439 (519)
T ss_pred ccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-----c-------------------------
Confidence 433 6788888899999999999999999999986544433311100 0
Q ss_pred hcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCccccc
Q 000703 372 LCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNS 451 (1342)
Q Consensus 372 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~ 451 (1342)
++-..+.|+- .+.+.+||||+|++|.+|+..+++.+
T Consensus 440 -----------~fiIrSCFgg------~~~~fiaSGSED~kvyIWhr~sgkll--------------------------- 475 (519)
T KOG0293|consen 440 -----------HFIIRSCFGG------GNDKFIASGSEDSKVYIWHRISGKLL--------------------------- 475 (519)
T ss_pred -----------ceEEEeccCC------CCcceEEecCCCceEEEEEccCCcee---------------------------
Confidence 0001111211 12468999999999999998765321
Q ss_pred CcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCE
Q 000703 452 MASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPL 531 (1342)
Q Consensus 452 ~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~l 531 (1342)
..|+||+..|.+|++.|. +-..
T Consensus 476 -------------------------------------------~~LsGHs~~vNcVswNP~---------------~p~m 497 (519)
T KOG0293|consen 476 -------------------------------------------AVLSGHSKTVNCVSWNPA---------------DPEM 497 (519)
T ss_pred -------------------------------------------EeecCCcceeeEEecCCC---------------CHHH
Confidence 135679999999999992 4568
Q ss_pred EEEEeCCCcEEEEeCC
Q 000703 532 VALGTQSGAVDVVDVS 547 (1342)
Q Consensus 532 lAsGs~DGtI~lWDl~ 547 (1342)
+|+|++|||||||-..
T Consensus 498 ~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPS 513 (519)
T ss_pred hhccCCCCeEEEecCC
Confidence 9999999999999875
No 34
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-24 Score=254.25 Aligned_cols=555 Identities=16% Similarity=0.197 Sum_probs=369.2
Q ss_pred eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEE
Q 000703 37 LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL 116 (1342)
Q Consensus 37 llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vW 116 (1342)
++.++-|++..++|.+...++.+=+.++. .|+|++=..+ +..+|. ...|.+|
T Consensus 49 ~vtt~vgksfqvYd~~kl~ll~vs~~lp~-----------~I~alas~~~----------------~vy~A~-g~~i~~~ 100 (910)
T KOG1539|consen 49 YVTTCVGKSFQVYDVNKLNLLFVSKPLPD-----------KITALASDKD----------------YVYVAS-GNKIYAY 100 (910)
T ss_pred EEEEecCceEEEEeccceEEEEecCCCCC-----------ceEEEEecCc----------------eEEEec-CcEEEEE
Confidence 45566789999999999888776556666 8999975533 233332 2356676
Q ss_pred eCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC-eEE----EEEeCCCCceEEEEecCCC
Q 000703 117 DFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SCM----WKYDASPEYLSCIRRNPFD 191 (1342)
Q Consensus 117 D~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~i----~~~~~~~~~v~~v~fsP~d 191 (1342)
-- |+.+.-+ ..+|.+ .|.-+. +-| ..|.++..++.+.+|+..++ +.. .-+....+.|+++ ++|..
T Consensus 101 ~r--gk~i~~~-~~~~~a-~v~~l~--~fG---e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~T 170 (910)
T KOG1539|consen 101 AR--GKHIRHT-TLLHGA-KVHLLL--PFG---EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPST 170 (910)
T ss_pred Ec--cceEEEE-eccccc-eEEEEe--eec---ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchh
Confidence 53 4333222 345655 677665 333 66778888999999999874 221 1111112225544 45521
Q ss_pred -CCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEE
Q 000703 192 -ARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIF 270 (1342)
Q Consensus 192 -~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~ 270 (1342)
-++++.|+.+|.+.+|++... |.++.. . .+...|..+.-+|-=-.++.
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~-------K~v~~f---------~---------------~~~s~IT~ieqsPaLDVVai 219 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTG-------KVVYTF---------Q---------------EFFSRITAIEQSPALDVVAI 219 (910)
T ss_pred heeeEEEeecCCcEEEEEeccC-------cEEEEe---------c---------------ccccceeEeccCCcceEEEE
Confidence 267899999999999998652 222110 0 01223555566666667788
Q ss_pred EEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCC-EEEEEeCCCcEEEEEccCCceeeeEeecccccccccccC
Q 000703 271 VTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSV 349 (1342)
Q Consensus 271 ~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~ 349 (1342)
+..+|+|.|++++.++.+.++..+ -+++.++.|.-||. .|+++...|.+.+||.......+.+...+. |
T Consensus 220 G~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~-----~--- 289 (910)
T KOG1539|consen 220 GLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY-----G--- 289 (910)
T ss_pred eccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc-----C---
Confidence 889999999999999999988754 26788899988987 788888999999999976554343321111 0
Q ss_pred CCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccc
Q 000703 350 PSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKD 429 (1342)
Q Consensus 350 ~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~ 429 (1342)
.+....|++.+ -.+.+.+.|..+++|-..++.
T Consensus 290 ---sv~~~~fl~~e--------------------------------------pVl~ta~~DnSlk~~vfD~~d------- 321 (910)
T KOG1539|consen 290 ---SVTGATFLPGE--------------------------------------PVLVTAGADNSLKVWVFDSGD------- 321 (910)
T ss_pred ---CcccceecCCC--------------------------------------ceEeeccCCCceeEEEeeCCC-------
Confidence 22233344332 267888899999998665431
Q ss_pred cccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEe
Q 000703 430 AIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAV 509 (1342)
Q Consensus 430 ~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~ 509 (1342)
|.| |+ ...-.||+.|.++|+|
T Consensus 322 ----------------g~p-----------------------------------------R~--LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 322 ----------------GVP-----------------------------------------RL--LRSRGGHSAPPSCIRF 342 (910)
T ss_pred ----------------Ccc-----------------------------------------hh--eeeccCCCCCchheee
Confidence 111 00 0011379999999999
Q ss_pred cCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEee-ecC-----------------CCeEEEEEcCC-
Q 000703 510 PSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFS-VHN-----------------GTVRGLRWLGN- 570 (1342)
Q Consensus 510 ~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~-gH~-----------------~~V~~l~fs~d- 570 (1342)
.-. .|..+.+++.|++.+.+++.....-+++. .|. .+|..+++...
T Consensus 343 y~~---------------~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 343 YGS---------------QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred ecc---------------CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 751 57899999999999999975332211111 111 12333332110
Q ss_pred ----CcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEecc----CCCCCeEEEEEcCCCCEEEEEECCCCEEEEec
Q 000703 571 ----SRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQK----PERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 571 ----~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g----~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl 642 (1342)
..++++-.+ +-.++.|+.+....-... +.. +....+++++.|+-|++.++|+..|+|.++++
T Consensus 408 E~~W~Nv~~~h~~---------~~~~~tW~~~n~~~G~~~-L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 408 EKEWDNVITAHKG---------KRSAYTWNFRNKTSGRHV-LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred hhhhcceeEEecC---------cceEEEEeccCcccccEE-ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 112222221 125678998653320111 111 14567899999999999999999999999999
Q ss_pred cCCcceeeecc------CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCC
Q 000703 643 TKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDT 716 (1342)
Q Consensus 643 ~kt~~~l~~l~------~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~ 716 (1342)
++|....++. .++++++- +..
T Consensus 478 -QSGi~r~sf~~~~ah~~~V~gla~----------------------------------------------------D~~ 504 (910)
T KOG1539|consen 478 -QSGIHRKSFGDSPAHKGEVTGLAV----------------------------------------------------DGT 504 (910)
T ss_pred -ccCeeecccccCccccCceeEEEe----------------------------------------------------cCC
Confidence 8886655553 12333322 123
Q ss_pred CCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccc
Q 000703 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTH 793 (1342)
Q Consensus 717 ~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H 793 (1342)
...+++++.+|-++.||..++.+.. .+.. + ..++++.+ ...++|.+..|=.|++.|+.+.+ .+.|.||
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~---~l~l----~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKK---SLRL----G--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred CceEEEccCcceEEEEecCCcceee---eecc----C--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 4668899999999999997655421 1111 1 23666666 56689999999999999999987 6889999
Q ss_pred cccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCC
Q 000703 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGAD 873 (1342)
Q Consensus 794 ~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~D 873 (1342)
++.|+.+.|||| | +.|++++.|++||+||+-++..+ -.+ ....++.++.|+|. |+ +||++..|
T Consensus 576 ~nritd~~FS~D--g----rWlisasmD~tIr~wDlpt~~lI-D~~----~vd~~~~sls~SPn----gD--~LAT~Hvd 638 (910)
T KOG1539|consen 576 GNRITDMTFSPD--G----RWLISASMDSTIRTWDLPTGTLI-DGL----LVDSPCTSLSFSPN----GD--FLATVHVD 638 (910)
T ss_pred ccceeeeEeCCC--C----cEEEEeecCCcEEEEeccCccee-eeE----ecCCcceeeEECCC----CC--EEEEEEec
Confidence 999999999999 6 88999999999999999998743 112 12467899999998 66 78999999
Q ss_pred -CcEEEEEc
Q 000703 874 -SSFRLIEV 881 (1342)
Q Consensus 874 -gtIrvWdi 881 (1342)
.-|.+|.=
T Consensus 639 ~~gIylWsN 647 (910)
T KOG1539|consen 639 QNGIYLWSN 647 (910)
T ss_pred CceEEEEEc
Confidence 67999963
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=257.07 Aligned_cols=292 Identities=14% Similarity=0.187 Sum_probs=232.9
Q ss_pred ccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEE
Q 000703 486 DMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGL 565 (1342)
Q Consensus 486 ~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l 565 (1342)
+.+.++.+...++||.++|.||++.| +..++++|+.|++|+|||+++|++..++.||-..|+++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP----------------~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~v 199 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDP----------------GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGV 199 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCC----------------CceeEEecCCCceeEEEEcccCeEEEeecchhheeeee
Confidence 35556778888999999999999999 46899999999999999999999999999999999999
Q ss_pred EEcCCCcEE-EEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccC
Q 000703 566 RWLGNSRLV-SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTK 644 (1342)
Q Consensus 566 ~fs~d~~ll-S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~k 644 (1342)
++++-..++ |++ .|..|+.||++..+ .+|...| |-+.|.++..+|.-+.|+++++|.++||||+ +
T Consensus 200 avS~rHpYlFs~g----------edk~VKCwDLe~nk--vIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWDi-R 265 (460)
T KOG0285|consen 200 AVSKRHPYLFSAG----------EDKQVKCWDLEYNK--VIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI-R 265 (460)
T ss_pred eecccCceEEEec----------CCCeeEEEechhhh--hHHHhcc-ccceeEEEeccccceeEEecCCcceEEEeee-c
Confidence 999877554 332 34589999999877 7887777 8999999999999999999999999999999 7
Q ss_pred CcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEE
Q 000703 645 NPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1342)
Q Consensus 645 t~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la 721 (1342)
+...+..|.+ +|+.+.+.| ...+++
T Consensus 266 tr~~V~~l~GH~~~V~~V~~~~----------------------------------------------------~dpqvi 293 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVASVMCQP----------------------------------------------------TDPQVI 293 (460)
T ss_pred ccceEEEecCCCCcceeEEeec----------------------------------------------------CCCceE
Confidence 8877777763 354444432 124578
Q ss_pred EEecCCCEEEEEec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccE
Q 000703 722 FALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGI 797 (1342)
Q Consensus 722 ~~~~DgtI~lwdv~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V 797 (1342)
+++.|++|++||+. |+.... +..|...|.+++. +-..+||++.| +|+-|++..|. +..+.+|.+-|
T Consensus 294 t~S~D~tvrlWDl~agkt~~t---------lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMIT---------LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred EecCCceEEEeeeccCceeEe---------eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 99999999999994 544422 2357778888887 55678888877 69999999998 67799999999
Q ss_pred EEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCccc--ccccCCCC--CCCcEEEEEEeCCCCCCCCCeEEEEEeCC
Q 000703 798 RRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA--NSLLQPQF--PGTLVLELDWLPTRTDKNDPLVLCIAGAD 873 (1342)
Q Consensus 798 ~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~--~~l~~gh~--~~~~V~~l~ws~d~~~~g~~~~L~s~s~D 873 (1342)
..+....| +.+++++..|++..||-+++-..- .+..++-. ....|+..+|-.. +. .|++|..|
T Consensus 364 ntl~~nsD-------~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt----g~--rlit~ead 430 (460)
T KOG0285|consen 364 NTLSVNSD-------GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT----GS--RLITGEAD 430 (460)
T ss_pred eeeeeccC-------ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc----Cc--eEEeccCC
Confidence 99998877 689999999999999999885221 11111100 1134677777654 33 67899999
Q ss_pred CcEEEEEcc
Q 000703 874 SSFRLIEVN 882 (1342)
Q Consensus 874 gtIrvWdi~ 882 (1342)
.+|++|.-.
T Consensus 431 KtIk~~keD 439 (460)
T KOG0285|consen 431 KTIKMYKED 439 (460)
T ss_pred cceEEEecc
Confidence 999999854
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=259.69 Aligned_cols=295 Identities=13% Similarity=0.165 Sum_probs=226.0
Q ss_pred CCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcC
Q 000703 295 RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCL 374 (1342)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~ 374 (1342)
++..++..+.+-|+-..++++++|++|++||..+|+....+.++.. ++..+.|.
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~------------sv~di~~~-------------- 159 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD------------SVFDISFD-------------- 159 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc------------ceeEEEEe--------------
Confidence 3457788899999999999999999999999999986544422221 12222222
Q ss_pred CCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccc-ccccccccccccCCcccccccccCcccccCc
Q 000703 375 DAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEG-AGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1342)
Q Consensus 375 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~-~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~ 453 (1342)
..|..||+.|.|=.+.+||+..-. +.+
T Consensus 160 ------------------------a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---------------------------- 187 (406)
T KOG0295|consen 160 ------------------------ASGKYLATCSSDLSAKLWDFDTFFRCIK---------------------------- 187 (406)
T ss_pred ------------------------cCccEEEecCCccchhheeHHHHHHHHH----------------------------
Confidence 227899999999999999986421 110
Q ss_pred CcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000703 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1342)
Q Consensus 454 ~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llA 533 (1342)
.+.||...|.++.|-| .|..|+
T Consensus 188 ------------------------------------------s~~gh~h~vS~V~f~P----------------~gd~il 209 (406)
T KOG0295|consen 188 ------------------------------------------SLIGHEHGVSSVFFLP----------------LGDHIL 209 (406)
T ss_pred ------------------------------------------HhcCcccceeeEEEEe----------------cCCeee
Confidence 1235778899999988 368999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCC
Q 000703 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPER 613 (1342)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~ 613 (1342)
+++.|.+|+.||+.+|.++++|.+|+.-|+-++.+.||++++. ++.++++++|-+.++.+ ...+++ |+
T Consensus 210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As---------~s~dqtl~vW~~~t~~~--k~~lR~-hE 277 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS---------CSNDQTLRVWVVATKQC--KAELRE-HE 277 (406)
T ss_pred ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe---------cCCCceEEEEEeccchh--hhhhhc-cc
Confidence 9999999999999999999999999999999999999987753 33467999999999973 344556 88
Q ss_pred CCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 614 APIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 614 ~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
-+|++++|-|...|= .|-+. ++ .
T Consensus 278 h~vEci~wap~~~~~---------~i~~a--t~-----------------~----------------------------- 300 (406)
T KOG0295|consen 278 HPVECIAWAPESSYP---------SISEA--TG-----------------S----------------------------- 300 (406)
T ss_pred cceEEEEecccccCc---------chhhc--cC-----------------C-----------------------------
Confidence 999999998742100 00000 00 0
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVM 770 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~Las 770 (1342)
...++.+.+++.|++|++||+. |..+.. +.||+.+|..++| .|++|+|
T Consensus 301 --------------------~~~~~~l~s~SrDktIk~wdv~tg~cL~t---------L~ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 301 --------------------TNGGQVLGSGSRDKTIKIWDVSTGMCLFT---------LVGHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred --------------------CCCccEEEeecccceEEEEeccCCeEEEE---------EecccceeeeeEEcCCCeEEEE
Confidence 0013456777888888888884 444432 3478899999999 5999999
Q ss_pred EeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEEC
Q 000703 771 GDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1342)
Q Consensus 771 Gs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl 829 (1342)
+..|+++++||+++++ .++++.|+.-|+++.|+-+. -++++|+-|-++++|..
T Consensus 352 caDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~------p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA------PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC------ceEEeccccceeeeeec
Confidence 9999999999999998 57789999999999998873 37999999999999974
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=250.33 Aligned_cols=343 Identities=15% Similarity=0.103 Sum_probs=254.3
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000703 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1342)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~ 135 (1342)
-+.+|..|++ .|.+|+.+|+ -+++|||+.|.+..|||..+|..... +.||..
T Consensus 56 S~~tF~~H~~-----------svFavsl~P~--------------~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKD- 107 (399)
T KOG0296|consen 56 SLVTFDKHTD-----------SVFAVSLHPN--------------NNLVATGGGDDLAFLWDISTGEFAGE--LTGHKD- 107 (399)
T ss_pred ceeehhhcCC-----------ceEEEEeCCC--------------CceEEecCCCceEEEEEccCCcceeE--ecCCCC-
Confidence 3578999999 8999999984 37899999999999999999997776 589988
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~ 215 (1342)
+|.++.|+.++ .+||+++-+|.|+||.+.+|...|++.+..+.+.-+.|.| ..+.|++|+.||.+..|.+..+
T Consensus 108 SVt~~~Fshdg---tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~--- 180 (399)
T KOG0296|consen 108 SVTCCSFSHDG---TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ--- 180 (399)
T ss_pred ceEEEEEccCc---eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc---
Confidence 99999999988 8999999999999999999999999987677888999999 9999999999999999975322
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCC
Q 000703 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1342)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1342)
...|-+. + +...|..=.|.|||++++++..|++|++||+++++++.++....
T Consensus 181 -~~~kv~~------------G---------------h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 181 -ALCKVMS------------G---------------HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred -ceeeEec------------C---------------CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 1112111 1 11224434899999999999999999999999999998776322
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCC
Q 000703 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1342)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~ 375 (1342)
+ ...--+.+..++..++.++.++.+.+-+-.+|+-+....+ . .| .+..-.-..++++
T Consensus 233 ~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~--~-~~---------~l~~~~e~~~esv---------- 289 (399)
T KOG0296|consen 233 G-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG--T-VP---------ELKPSQEELDESV---------- 289 (399)
T ss_pred c-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC--C-Cc---------cccccchhhhhhh----------
Confidence 1 1111233456788999999999998888777752222110 0 01 0000000011110
Q ss_pred CCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCc
Q 000703 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASS 455 (1342)
Q Consensus 376 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~ 455 (1342)
...+ .+..-...|.++.||+|.+||+.......
T Consensus 290 -e~~~----------------~ss~lpL~A~G~vdG~i~iyD~a~~~~R~------------------------------ 322 (399)
T KOG0296|consen 290 -ESIP----------------SSSKLPLAACGSVDGTIAIYDLAASTLRH------------------------------ 322 (399)
T ss_pred -hhcc----------------cccccchhhcccccceEEEEecccchhhe------------------------------
Confidence 0000 00012367889999999999987543100
Q ss_pred CcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEE
Q 000703 456 ADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALG 535 (1342)
Q Consensus 456 g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsG 535 (1342)
.--|..+|+.+.|-+ .++|+++
T Consensus 323 -----------------------------------------~c~he~~V~~l~w~~-----------------t~~l~t~ 344 (399)
T KOG0296|consen 323 -----------------------------------------ICEHEDGVTKLKWLN-----------------TDYLLTA 344 (399)
T ss_pred -----------------------------------------eccCCCceEEEEEcC-----------------cchheee
Confidence 001566788888876 3688999
Q ss_pred eCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcC
Q 000703 536 TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR 598 (1342)
Q Consensus 536 s~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~ 598 (1342)
+.||+|++||..+|++..++.||...|.+++.+++.++|... +.||+.+|+++.
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~---------s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV---------SDDNTALVFEVP 398 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe---------cCCCeEEEEecC
Confidence 999999999999999999999999999999999999766433 235688888763
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=250.00 Aligned_cols=338 Identities=14% Similarity=0.161 Sum_probs=252.8
Q ss_pred CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 129 PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 129 ~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
+..|+. +|.+++.+|+. +++|++++|....||+..+|.....+++|.+.|+|+.|+. |+..||+++.+|.|++|+
T Consensus 60 F~~H~~-svFavsl~P~~---~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTD-SVFAVSLHPNN---NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCC-ceEEEEeCCCC---ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEE
Confidence 478988 99999999955 8999999999999999999998899999999999999997 999999999999999998
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCcee
Q 000703 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL 288 (1342)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l 288 (1342)
.+.+.. ++.+. . . -..+.=+.++|-+..+++++.|+.+.+|.+..+...
T Consensus 135 ~stg~~------~~~~~------~-----------------e--~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 135 VSTGGE------QWKLD------Q-----------------E--VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred cccCce------EEEee------c-----------------c--cCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 765321 11110 0 0 012444689999999999999999999999986555
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhh
Q 000703 289 FSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQN 368 (1342)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~ 368 (1342)
..+.. +..+...=-+.|||+.++++..||+|++|+.++|.+++.+.+.|. ++ .|
T Consensus 184 kv~~G--h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~----------------~~------- 237 (399)
T KOG0296|consen 184 KVMSG--HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG-LE----------------LP------- 237 (399)
T ss_pred eEecC--CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc-Cc----------------CC-------
Confidence 65654 345554445679999999999999999999999998887743222 11 01
Q ss_pred hhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcc
Q 000703 369 VAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTN 448 (1342)
Q Consensus 369 ~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~ 448 (1342)
+..++..+.++..++.||.+.+-...+++....+ .|..
T Consensus 238 -------------------------~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~-----------------n~~~ 275 (399)
T KOG0296|consen 238 -------------------------CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN-----------------NGTV 275 (399)
T ss_pred -------------------------ccccccccceeEeccCCccEEEEccccceEEEec-----------------CCCC
Confidence 0112233678899999999988766665432210 0000
Q ss_pred cccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCC
Q 000703 449 TNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVA 528 (1342)
Q Consensus 449 l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~ 528 (1342)
.+++ .++...+-+|.+.|- . ..
T Consensus 276 --------------------------------------~~l~-------~~~e~~~esve~~~~--s-----------s~ 297 (399)
T KOG0296|consen 276 --------------------------------------PELK-------PSQEELDESVESIPS--S-----------SK 297 (399)
T ss_pred --------------------------------------cccc-------ccchhhhhhhhhccc--c-----------cc
Confidence 0000 112334444555441 1 14
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEe
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1342)
-++.|+|+.||+|.|||+.+..+.+ .-.|...|..+.|.+...++++.. ++.|+.||.|||+ .+.++
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~t~~l~t~c~----------~g~v~~wDaRtG~--l~~~y 364 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLNTDYLLTACA----------NGKVRQWDARTGQ--LKFTY 364 (399)
T ss_pred cchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcCcchheeecc----------CceEEeeeccccc--eEEEE
Confidence 6899999999999999998765544 446899999999998444554333 4589999999998 55566
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEec
Q 000703 609 QKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 609 ~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl 642 (1342)
.| |..+|.+++++|++++++++|.|++.+|+++
T Consensus 365 ~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TG-HQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ec-CchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 67 9999999999999999999999999999987
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4.3e-27 Score=280.52 Aligned_cols=268 Identities=20% Similarity=0.264 Sum_probs=209.0
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCc
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~ 581 (1342)
..++|..|++ ++.++|.|..|..|++|.+...++ +.+. +-.+...-.
T Consensus 379 ~~v~ca~fSd----------------dssmlA~Gf~dS~i~~~Sl~p~kl-~~lk-------~~~~l~~~d--------- 425 (707)
T KOG0263|consen 379 QGVTCAEFSD----------------DSSMLACGFVDSSVRVWSLTPKKL-KKLK-------DASDLSNID--------- 425 (707)
T ss_pred CcceeEeecC----------------CcchhhccccccEEEEEecchhhh-cccc-------chhhhcccc---------
Confidence 4688888887 678999999999999999965432 2222 111111000
Q ss_pred ccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---ceEE
Q 000703 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTV 658 (1342)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~vt~ 658 (1342)
.+..|..+.+-|..++. ..+.+.| |.+||.+.+|+|+.++|+++|.|+++|+|.+ .+..++-.+++ ||..
T Consensus 426 ---~~sad~~~~~~D~~~~~--~~~~L~G-H~GPVyg~sFsPd~rfLlScSED~svRLWsl-~t~s~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 426 ---TESADVDVDMLDDDSSG--TSRTLYG-HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-DTWSCLVIYKGHLAPVWD 498 (707)
T ss_pred ---ccccchhhhhccccCCc--eeEEeec-CCCceeeeeecccccceeeccCCcceeeeec-ccceeEEEecCCCcceee
Confidence 11112234455555443 3445666 9999999999999999999999999999999 68877765553 4556
Q ss_pred EEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCe
Q 000703 659 LEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR 738 (1342)
Q Consensus 659 l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~ 738 (1342)
+.|+|- +-.||+++.|++-++|..+...
T Consensus 499 V~F~P~----------------------------------------------------GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 499 VQFAPR----------------------------------------------------GYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred EEecCC----------------------------------------------------ceEEEecCCCceeeeeecccCC
Confidence 666642 3579999999999999985432
Q ss_pred eeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEE
Q 000703 739 IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRI 815 (1342)
Q Consensus 739 v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~L 815 (1342)
. ...|++|.+-|.|++| +..++++||.|.++|+||+.+|. .+.|.||+++|.+|+|||+ | .+|
T Consensus 527 P--------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~--G----r~L 592 (707)
T KOG0263|consen 527 P--------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC--G----RYL 592 (707)
T ss_pred c--------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC--C----ceE
Confidence 1 1235689999999999 88999999999999999999997 6889999999999999999 6 789
Q ss_pred EEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 816 AVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 816 as~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
|+++.|+.|+|||+.++..+ ..+ .+|. +.|.++.|+.+ |. +||+||.|++|++||+....
T Consensus 593 aSg~ed~~I~iWDl~~~~~v-~~l-~~Ht--~ti~SlsFS~d----g~--vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLV-KQL-KGHT--GTIYSLSFSRD----GN--VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eecccCCcEEEEEcCCCcch-hhh-hccc--CceeEEEEecC----CC--EEEecCCCCeEEEEEchhhc
Confidence 99999999999999999854 344 6885 67999999998 55 79999999999999987443
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=263.44 Aligned_cols=279 Identities=15% Similarity=0.254 Sum_probs=223.8
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~ 580 (1342)
..+|..|.+.| .|+.|++|+..|.+.||+..+-.....+..|..+|+++.|++++..+..
T Consensus 96 kc~V~~v~WtP----------------eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS---- 155 (464)
T KOG0284|consen 96 KCPVNVVRWTP----------------EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS---- 155 (464)
T ss_pred ccceeeEEEcC----------------CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE----
Confidence 35788899998 6899999999999999998544444456799999999999999966532
Q ss_pred cccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---ceE
Q 000703 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFT 657 (1342)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~vt 657 (1342)
|..++.|++|+..-.. +...+.+|...|++++|||....++++|.|++|+|||. ..++.-+.+.+ .+.
T Consensus 156 -----gD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf-~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 156 -----GDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF-RMPKEERVLRGHGWDVK 226 (464)
T ss_pred -----cCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec-cCCchhheeccCCCCcc
Confidence 2234689999986544 23335557789999999999999999999999999998 45544333332 367
Q ss_pred EEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec-C
Q 000703 658 VLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-G 736 (1342)
Q Consensus 658 ~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~-g 736 (1342)
++.|+|. ...+|+++.|+.|++||.+ |
T Consensus 227 svdWHP~----------------------------------------------------kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 227 SVDWHPT----------------------------------------------------KGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred eeccCCc----------------------------------------------------cceeEEccCCceeEeecCCCc
Confidence 8889864 2468899999999999995 4
Q ss_pred CeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCC
Q 000703 737 RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRG 813 (1342)
Q Consensus 737 ~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~ 813 (1342)
..+-. +-+|...|.++.| ++++|+++|.|.+++++|+++-+ +..+.+|+..|+++.|+|-.+ +
T Consensus 255 ~cl~t---------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~-----~ 320 (464)
T KOG0284|consen 255 SCLAT---------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE-----S 320 (464)
T ss_pred chhhh---------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc-----c
Confidence 44422 2267788999999 88999999999999999999654 788999999999999999854 4
Q ss_pred EEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 814 RIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 814 ~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
.+.+++.||.|..|.+...+++.. .++++...|++++|+|- |. +||+|+.|.++|+|.-..
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~---i~~AHd~~iwsl~~hPl----Gh--il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGE---IPPAHDGEIWSLAYHPL----GH--ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ceeeccCCCceEEEeccccccccC---CCcccccceeeeecccc----ce--eEeecCCCcceeeeccCC
Confidence 788899999999999986666542 34444578999999998 55 799999999999998654
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=8.9e-28 Score=260.35 Aligned_cols=238 Identities=19% Similarity=0.299 Sum_probs=192.4
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~ 576 (1342)
|.||++.|-|+.++- +++++|+.|.||+|||+.+|++++++-+|..+|..+.|+. |-+++.
T Consensus 233 L~GHtGSVLCLqyd~------------------rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtc 293 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE------------------RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTC 293 (499)
T ss_pred hhcCCCcEEeeeccc------------------eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEe
Confidence 346899999999874 6999999999999999999999999999999999999965 567777
Q ss_pred ecCCcccccCcccCEEEEEEcCCCc-eeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGI-NRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP 655 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~-~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~ 655 (1342)
|.|. ++.|||+.+.. ....+.+.| |.+.|+.+.|+. +|++++|.|+|||+|++ .++.+++++.++
T Consensus 294 SkDr----------siaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~--kyIVsASgDRTikvW~~-st~efvRtl~gH 359 (499)
T KOG0281|consen 294 SKDR----------SIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD--KYIVSASGDRTIKVWST-STCEFVRTLNGH 359 (499)
T ss_pred cCCc----------eeEEEeccCchHHHHHHHHhh-hhhheeeecccc--ceEEEecCCceEEEEec-cceeeehhhhcc
Confidence 6654 89999996543 233455666 899999999975 59999999999999999 699999987643
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
-.+++.. | -.+..+++|+.|.+|++||++
T Consensus 360 kRGIACl--------Q-------------------------------------------Yr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 360 KRGIACL--------Q-------------------------------------------YRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred cccceeh--------h-------------------------------------------ccCeEEEecCCCceEEEEecc
Confidence 2222211 0 113567899999999999996
Q ss_pred -CCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-e---------eeeccccccEEEEEEec
Q 000703 736 -GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-S---------SQFSTHREGIRRIKFSP 804 (1342)
Q Consensus 736 -g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~---------~~l~~H~~~V~~v~fSP 804 (1342)
|..++- +.||...|.||.||.+.+|+|..||+|++||+.++. . .++..|+|+|..+.|..
T Consensus 389 ~G~cLRv---------LeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 389 CGACLRV---------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred ccHHHHH---------HhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 444442 337889999999999999999999999999999864 1 24578999999999953
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000703 805 VVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1342)
Q Consensus 805 d~~g~~~~~~Las~s~DgtI~IWDl~t~~~l 835 (1342)
.+|+++++|.+|-|||...+.+.
T Consensus 460 --------fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 460 --------FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred --------eEEEeccCCCeEEEEEcCCCCcc
Confidence 46889999999999999877543
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=267.19 Aligned_cols=282 Identities=13% Similarity=0.181 Sum_probs=223.6
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeeecCCCeEEEEEcCCC-cE
Q 000703 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAVTASFSVHNGTVRGLRWLGNS-RL 573 (1342)
Q Consensus 496 ~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~~~~l~gH~~~V~~l~fs~d~-~l 573 (1342)
.+.||+..|+++.|.|- .++||++|++|+.|+|||+-. +.++++|.||+.+|++++|+.+| +|
T Consensus 209 ~~~gH~kgvsai~~fp~---------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPK---------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred eccCCccccchhhhccc---------------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee
Confidence 46789999999999982 489999999999999999976 88999999999999999999988 78
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCC-CEEEEEECCCCEEEEeccCCcceeeec
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSG-RYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg-~~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
+|+|+|. .|++||++||+ ++..+. ....++++.|+||+ +.+++|..|+.|+.||+ +++..++++
T Consensus 274 LS~sfD~----------~lKlwDtETG~--~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi-Rs~kvvqeY 338 (503)
T KOG0282|consen 274 LSASFDR----------FLKLWDTETGQ--VLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI-RSGKVVQEY 338 (503)
T ss_pred eeeecce----------eeeeeccccce--EEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEec-cchHHHHHH
Confidence 8877764 89999999998 444333 34578999999999 88899999999999999 899988876
Q ss_pred cC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCE
Q 000703 653 AL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1342)
Q Consensus 653 ~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI 729 (1342)
.. .+..+.|-+. +..|++.+.|+++
T Consensus 339 d~hLg~i~~i~F~~~----------------------------------------------------g~rFissSDdks~ 366 (503)
T KOG0282|consen 339 DRHLGAILDITFVDE----------------------------------------------------GRRFISSSDDKSV 366 (503)
T ss_pred HhhhhheeeeEEccC----------------------------------------------------CceEeeeccCccE
Confidence 62 4556666532 4568999999999
Q ss_pred EEEEecCCe-eeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc----eeeecccc--ccEEEEEE
Q 000703 730 GVFEVHGRR-IRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHR--EGIRRIKF 802 (1342)
Q Consensus 730 ~lwdv~g~~-v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~----~~~l~~H~--~~V~~v~f 802 (1342)
++|+..-.. ++. ..... .|.-....+...+++++.-+.|+.|.++.+.-.- -+.|.||. |.-..|.|
T Consensus 367 riWe~~~~v~ik~---i~~~~---~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 367 RIWENRIPVPIKN---IADPE---MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred EEEEcCCCccchh---hcchh---hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999984322 211 00000 1322223334489999999999999999876531 34578886 66778899
Q ss_pred ecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 803 SPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
||| | ++|++|..||.+.+||-++-+ +...+ ..|. ..+..++|+|- .+-.+|++|+||.|++|+
T Consensus 441 SpD--G----~~l~SGdsdG~v~~wdwkt~k-l~~~l-kah~--~~ci~v~wHP~-----e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPD--G----RTLCSGDSDGKVNFWDWKTTK-LVSKL-KAHD--QPCIGVDWHPV-----EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCC--C----CeEEeecCCccEEEeechhhh-hhhcc-ccCC--cceEEEEecCC-----CcceeEecccCceeEecC
Confidence 999 6 789999999999999999877 44444 5664 78999999996 444689999999999996
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.7e-25 Score=290.77 Aligned_cols=286 Identities=13% Similarity=0.237 Sum_probs=219.2
Q ss_pred eeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEeeecCCCeEEEE
Q 000703 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----A----VTASFSVHNGTVRGLR 566 (1342)
Q Consensus 495 g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----~----~~~~l~gH~~~V~~l~ 566 (1342)
|.+.+|...|++++|+| ++.++|+|+.||+|+|||+.+. . ....+. +...|.++.
T Consensus 477 ~~~~~~~~~V~~i~fs~----------------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~ 539 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDR----------------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC 539 (793)
T ss_pred ccccCCCCcEEEEEECC----------------CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE
Confidence 55667899999999998 5889999999999999997532 1 122333 346899999
Q ss_pred EcCC-C-cEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcC-CCCEEEEEECCCCEEEEecc
Q 000703 567 WLGN-S-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMT 643 (1342)
Q Consensus 567 fs~d-~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Sp-dg~~Las~s~D~tIkvWDl~ 643 (1342)
|++. + .+++++ .|++|+|||+.+++ .+..+.+ |...|++++|+| ++.+|++|+.|++|++||+
T Consensus 540 ~~~~~~~~las~~----------~Dg~v~lWd~~~~~--~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~- 605 (793)
T PLN00181 540 WNSYIKSQVASSN----------FEGVVQVWDVARSQ--LVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSI- 605 (793)
T ss_pred eccCCCCEEEEEe----------CCCeEEEEECCCCe--EEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC-
Confidence 9874 4 444433 35699999999887 5555555 889999999997 7899999999999999999
Q ss_pred CCcceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEE
Q 000703 644 KNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1342)
Q Consensus 644 kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la 721 (1342)
+++..+..+. ..+.++.|+++ .+..|+
T Consensus 606 ~~~~~~~~~~~~~~v~~v~~~~~---------------------------------------------------~g~~la 634 (793)
T PLN00181 606 NQGVSIGTIKTKANICCVQFPSE---------------------------------------------------SGRSLA 634 (793)
T ss_pred CCCcEEEEEecCCCeEEEEEeCC---------------------------------------------------CCCEEE
Confidence 6777766554 24556666422 246789
Q ss_pred EEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCC-------ceeeeccc
Q 000703 722 FALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTG-------HSSQFSTH 793 (1342)
Q Consensus 722 ~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg-------~~~~l~~H 793 (1342)
+++.||+|++||+....... ..+.+|...|.++.| ++.+|++|+.|++|++||+..+ .++++.+|
T Consensus 635 tgs~dg~I~iwD~~~~~~~~-------~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPL-------CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EEeCCCeEEEEECCCCCccc-------eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 99999999999995432100 012367788999999 8899999999999999999743 25678999
Q ss_pred cccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc-cc-----cCC---CCCCCcEEEEEEeCCCCCCCCC
Q 000703 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN-SL-----LQP---QFPGTLVLELDWLPTRTDKNDP 864 (1342)
Q Consensus 794 ~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~-~l-----~~g---h~~~~~V~~l~ws~d~~~~g~~ 864 (1342)
...|..+.|+|+ + ++||+++.|++|+|||...+.++.. .. ..+ +.+...|.+++|+|+ +.
T Consensus 708 ~~~i~~v~~s~~--~----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~----~~- 776 (793)
T PLN00181 708 TNVKNFVGLSVS--D----GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ----SS- 776 (793)
T ss_pred CCCeeEEEEcCC--C----CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC----CC-
Confidence 999999999998 4 7899999999999999876543210 00 000 112356999999997 44
Q ss_pred eEEEEEeCCCcEEEEEc
Q 000703 865 LVLCIAGADSSFRLIEV 881 (1342)
Q Consensus 865 ~~L~s~s~DgtIrvWdi 881 (1342)
.|++|+.||+|+||++
T Consensus 777 -~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 -TLVAANSTGNIKILEM 792 (793)
T ss_pred -eEEEecCCCcEEEEec
Confidence 5889999999999996
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=4.7e-26 Score=244.85 Aligned_cols=278 Identities=16% Similarity=0.228 Sum_probs=221.5
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEeeecCCCeEEEEEcCCC-cE
Q 000703 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS-RL 573 (1342)
Q Consensus 496 ~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~gH~~~V~~l~fs~d~-~l 573 (1342)
++.||.+.|+.+.|.| +|.++|+|+.|..|.+|++... +....+.+|+++|..+.|..|+ .+
T Consensus 42 ~l~gh~geI~~~~F~P----------------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHP----------------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred hcCCCcceEEEEEECC----------------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEE
Confidence 4678999999999999 6899999999999999997432 3456788999999999999988 56
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCC-EEEEEECCCCEEEEeccCCcceeeec
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGR-YLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~-~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
+|++.|. +++.||+++|+ .++.+++ |..-|.++..+.-|. ++.+++.|+++||||+ ++...++++
T Consensus 106 ~S~gtDk----------~v~~wD~~tG~--~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~-R~k~~~~t~ 171 (338)
T KOG0265|consen 106 LSCGTDK----------TVRGWDAETGK--RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI-RKKEAIKTF 171 (338)
T ss_pred EEecCCc----------eEEEEecccce--eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEee-cccchhhcc
Confidence 6766654 89999999998 6676666 888888888665565 4567899999999999 788888887
Q ss_pred c--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEE
Q 000703 653 A--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1342)
Q Consensus 653 ~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~ 730 (1342)
+ -+++++.|.-+ ++.+.+|+-|+.|+
T Consensus 172 ~~kyqltAv~f~d~----------------------------------------------------s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDT----------------------------------------------------SDQVISGGIDNDIK 199 (338)
T ss_pred ccceeEEEEEeccc----------------------------------------------------ccceeeccccCcee
Confidence 5 34688888621 24467899999999
Q ss_pred EEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCC---c--eeeeccccc----cEEE
Q 000703 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTG---H--SSQFSTHRE----GIRR 799 (1342)
Q Consensus 731 lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg---~--~~~l~~H~~----~V~~ 799 (1342)
+||+..+...- .+.||...|+.|+. +|.++.+-+.|.++++||++-- + +..+.+|.. ....
T Consensus 200 vWd~r~~d~~~--------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 200 VWDLRKNDGLY--------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeccccCcceE--------EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99995544321 13378889999888 9999999999999999999853 2 344566543 3456
Q ss_pred EEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEE
Q 000703 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLI 879 (1342)
Q Consensus 800 v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvW 879 (1342)
++|||+ + ..+..++.|+.+.+||..... +...+ .||. +.|..++|+|. +++ |.+++.|.+|.+=
T Consensus 272 cswsp~--~----~~i~ags~dr~vyvwd~~~r~-~lykl-pGh~--gsvn~~~Fhp~-----e~i-ils~~sdk~i~lg 335 (338)
T KOG0265|consen 272 CSWSPN--G----TKITAGSADRFVYVWDTTSRR-ILYKL-PGHY--GSVNEVDFHPT-----EPI-ILSCSSDKTIYLG 335 (338)
T ss_pred eeccCC--C----CccccccccceEEEeeccccc-EEEEc-CCcc--eeEEEeeecCC-----CcE-EEEeccCceeEee
Confidence 789999 4 568889999999999998876 44555 7887 67999999997 775 7899999998763
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-23 Score=243.68 Aligned_cols=502 Identities=13% Similarity=0.156 Sum_probs=326.3
Q ss_pred CCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCC
Q 000703 69 GSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPD 148 (1342)
Q Consensus 69 ~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~ 148 (1342)
-|+++..+.|+++||+.+. ..||.+-.||.|.||+++.+...... +.|+....|.+|||++.
T Consensus 19 rf~d~~Ps~I~slA~s~kS--------------~~lAvsRt~g~IEiwN~~~~w~~~~v-i~g~~drsIE~L~W~e~--- 80 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKS--------------NQLAVSRTDGNIEIWNLSNNWFLEPV-IHGPEDRSIESLAWAEG--- 80 (691)
T ss_pred EEEeeeccceEEEEEeccC--------------CceeeeccCCcEEEEccCCCceeeEE-EecCCCCceeeEEEccC---
Confidence 4677777899999999874 56999999999999999887655443 56677669999999954
Q ss_pred CcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc
Q 000703 149 SFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC 228 (1342)
Q Consensus 149 ~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~ 228 (1342)
..|.+.+.+|.|.-||+.+++++..++.....|++++.+| ....++.+++||.++.++..++ -+ +|..
T Consensus 81 -~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~---~I---~~~r---- 148 (691)
T KOG2048|consen 81 -GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPD---KI---TYKR---- 148 (691)
T ss_pred -CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCc---eE---EEEe----
Confidence 4678889999999999999999999988788999999999 7899999999996555443221 11 1110
Q ss_pred chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeE-----EEecCC-CccceEE
Q 000703 229 TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLF-----SAALPR-GCAKFLD 302 (1342)
Q Consensus 229 ~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~-----~~~l~~-~~~~~~~ 302 (1342)
.+.+. .+.+++++|+|++..++.++.|+-|++||+.+++.+. ...+.+ ...-+++
T Consensus 149 -~l~rq------------------~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 149 -SLMRQ------------------KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred -ecccc------------------cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 01111 1358899999999999999999999999999998876 222222 2233567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCC
Q 000703 303 VLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSA 382 (1342)
Q Consensus 303 v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g 382 (1342)
|.+-.|+ .|+||..-|+|+.||...|.++.... .....|++++...+
T Consensus 210 v~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~------------~h~adVl~Lav~~~-------------------- 256 (691)
T KOG2048|consen 210 VLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS------------CHDADVLALAVADN-------------------- 256 (691)
T ss_pred EEEeecC-cEEEecCCceEEEEcccCcchhhhhh------------hhhcceeEEEEcCC--------------------
Confidence 7776555 79999999999999998876433221 01114555554432
Q ss_pred ccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeec
Q 000703 383 NVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALE 462 (1342)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s 462 (1342)
+.++.+++.|++|-.+...+....
T Consensus 257 ------------------~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------- 280 (691)
T KOG2048|consen 257 ------------------EDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------- 280 (691)
T ss_pred ------------------CCeEEEccCCCceEEEEecCCccc--------------------------------------
Confidence 348999999999988766543210
Q ss_pred cccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEE
Q 000703 463 AGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVD 542 (1342)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~ 542 (1342)
+...+.-.+|++.|.++++.+ ..+.+|+.|+++.
T Consensus 281 ----------------------------wv~~~~r~~h~hdvrs~av~~------------------~~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 281 ----------------------------WVINSRRDLHAHDVRSMAVIE------------------NALISGGRDFTLA 314 (691)
T ss_pred ----------------------------eeeeccccCCcccceeeeeec------------------ceEEecceeeEEE
Confidence 001112234677788888765 3788888998887
Q ss_pred EEeCCCCcE----EEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCC----ce--eeeEEeccCC
Q 000703 543 VVDVSANAV----TASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG----IN--RAFRVLQKPE 612 (1342)
Q Consensus 543 lWDl~tg~~----~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG----~~--~~l~~l~g~h 612 (1342)
+--...-.. .+....|... +.-.+..+++..= +.+.+.+|-+-++ +. +.+-.+.-.+
T Consensus 315 i~~s~~~~~~~h~~~~~~p~~~~---v~~a~~~~L~~~w----------~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 315 ICSSREFKNMDHRQKNLFPASDR---VSVAPENRLLVLW----------KAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred EccccccCchhhhccccccccce---eecCccceEEEEe----------ccccccceeccCcccccccChhhheeeecCC
Confidence 765532111 0111111111 1112222222211 1235566665443 11 1111122235
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec--cC------ceEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 613 RAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL--AL------PFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 613 ~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l--~~------~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
...|.+.+.||+|++++.+.-. .++|+.+ +....++.. +. +...+.|+
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L-~~~~~vk~~~v~~~~~~~~~a~~i~ft---------------------- 437 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS-RTKIYRL-QPDPNVKVINVDDVPLALLDASAISFT---------------------- 437 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc-ceEEEEe-ccCcceeEEEeccchhhhccceeeEEE----------------------
Confidence 5789999999999999987653 4688887 332122211 00 00111111
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEe-cCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY 763 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~-~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~ 763 (1342)
.++..+..++ .+..+.+++.++-.-+......+. +....|+.|+.
T Consensus 438 ------------------------------id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~ 483 (691)
T KOG2048|consen 438 ------------------------------IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVV 483 (691)
T ss_pred ------------------------------ecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEE
Confidence 1122333333 566777777654322211111111 12245766666
Q ss_pred --cCCEEEEEeCCCcEEEEECCCCceeeec-cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC
Q 000703 764 --RLPHVVMGDRSGNIRWWDVTTGHSSQFS-THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 764 --dg~~LasGs~DgtI~lWDl~tg~~~~l~-~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~ 830 (1342)
||++||+.+.+|.|.+|++.+++.+.+. --...|+..+|+|.. ..+|+++..|+.+.=+|+.
T Consensus 484 SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~-----~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 484 SSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV-----RNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred cCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccc-----cCcEEEEecCCeEEEEecc
Confidence 9999999999999999999998876653 455899999999762 2679999999999999994
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=5.8e-25 Score=246.32 Aligned_cols=278 Identities=21% Similarity=0.359 Sum_probs=221.1
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~ 576 (1342)
+.+|..+|++++++| +++++++|+.||.|++||+.++.....+.+|...+..+.|++++..+.+
T Consensus 5 ~~~h~~~i~~~~~~~----------------~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 5 LKGHTGGVTCVAFSP----------------DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68 (289)
T ss_pred hcccCCCEEEEEEcC----------------CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE
Confidence 457899999999998 5789999999999999999999888899999999999999998854443
Q ss_pred ecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--- 653 (1342)
+. .++.+++||+.+++ .+..+.. |...|.++.|+++++++++++.|+.|.+||+ +++.....+.
T Consensus 69 ~~---------~~~~i~i~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~ 135 (289)
T cd00200 69 GS---------SDKTIRLWDLETGE--CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDV-ETGKCLTTLRGHT 135 (289)
T ss_pred Ec---------CCCeEEEEEcCccc--ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEEC-CCcEEEEEeccCC
Confidence 32 24689999998875 4444444 6778999999999999999988999999999 6666665544
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEE
Q 000703 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1342)
Q Consensus 654 ~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwd 733 (1342)
.+++.+.|+|+ +..++++..||.|++||
T Consensus 136 ~~i~~~~~~~~----------------------------------------------------~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 136 DWVNSVAFSPD----------------------------------------------------GTFVASSSQDGTIKLWD 163 (289)
T ss_pred CcEEEEEEcCc----------------------------------------------------CCEEEEEcCCCcEEEEE
Confidence 24667777643 24566666799999999
Q ss_pred ecCCe-eeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCC
Q 000703 734 VHGRR-IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 734 v~g~~-v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
+...+ +.. +..|.+.+.+++| +++.+++++.||.|++||+++++ ...+..|...|.++.|+|+ +
T Consensus 164 ~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~- 231 (289)
T cd00200 164 LRTGKCVAT---------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD--G- 231 (289)
T ss_pred cccccccee---------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC--C-
Confidence 96433 222 1235567889999 67799999999999999999876 4566789999999999998 3
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
..+++++.|+.|++||+.+++.+ ..+ .+|. ..|.+++|+|+ +. +|++++.||.|++|+
T Consensus 232 ---~~~~~~~~~~~i~i~~~~~~~~~-~~~-~~~~--~~i~~~~~~~~----~~--~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 ---YLLASGSEDGTIRVWDLRTGECV-QTL-SGHT--NSVTSLAWSPD----GK--RLASGSADGTIRIWD 289 (289)
T ss_pred ---cEEEEEcCCCcEEEEEcCCceeE-EEc-cccC--CcEEEEEECCC----CC--EEEEecCCCeEEecC
Confidence 55666666999999999987643 333 3554 57999999997 44 578999999999996
No 47
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-23 Score=241.65 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhh-cCCccHHHHHHHHHHhhhcccccHHHHHHH
Q 000703 1169 KVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATH-LKGSDYARVLQRWADHVHHVEHNIWRALIL 1247 (1342)
Q Consensus 1169 k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 1247 (1342)
-.+|.||.++|||+++|+.+...+.++.|+.+|+.++||.+|++|||.+ | +++..++.|.|+||+...+ ..+||+.
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~-~~eaIe~ 932 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADAN-HMEAIEK 932 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcc-hHHHHHH
Confidence 4579999999999999999999999999999999999999999999999 7 7799999999999998775 5699999
Q ss_pred HHHhCCHHHHHHHHHh---------------cCCchHHHHHHHHHHHHhhhh
Q 000703 1248 YVAAGGLQEALAALRE---------------AQHPDTAAMFVLACREIYAEI 1284 (1342)
Q Consensus 1248 ~~~~g~~~~~~~~l~~---------------~~~~~~aa~~~~~~~e~~~~~ 1284 (1342)
++++|.|.+|++||++ +|+|+++||++|.+||..++.
T Consensus 933 ~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~ 984 (1189)
T KOG2041|consen 933 DRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKEL 984 (1189)
T ss_pred hhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 889999999999999987754
No 48
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.3e-24 Score=252.29 Aligned_cols=584 Identities=14% Similarity=0.159 Sum_probs=361.9
Q ss_pred CccccccccCCCCCCCCCCceEeCCCCeEEE--EcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEec
Q 000703 10 DSWDCNFMLPGPPSRNNFGSADLSPSGLLAF--ASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1342)
Q Consensus 10 ~~~~~~~~lpg~~~~~~~~a~~~s~~gllA~--gs~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1342)
+.|-|-.+++| |. +++++.+..-.+.+ ++++.|.+||.+... +.+++.--.+ ...-.|+++.|
T Consensus 89 ~~~~~i~~~~g--~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k---------~~ipLcL~~~~ 155 (764)
T KOG1063|consen 89 EYLIKIYTIQG--HC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK---------EAIPLCLAALK 155 (764)
T ss_pred hheEEEEeecC--cc--eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhh---------hHhhHHHhhhc
Confidence 55889899999 54 45666654332222 478999999995555 2333322221 00123455555
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
+ +.--+||-|+.+..|.|.--..++.....++.||+. -|.+|+|..-+.+.-+|||++.|.+|+||.
T Consensus 156 ~------------~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~D-WIrsl~f~~~~~~~~~laS~SQD~yIRiW~ 222 (764)
T KOG1063|consen 156 N------------NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTD-WIRSLAFARLGGDDLLLASSSQDRYIRIWR 222 (764)
T ss_pred c------------CCcEEEEecCcceEEEEeccCCcceeEEEEeeccch-hhhhhhhhccCCCcEEEEecCCceEEEEEE
Confidence 3 344678888888888888776777777777899999 999999988765347999999999999998
Q ss_pred CCCCe---------------------EEEEE----------eCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000703 166 TTSAS---------------------CMWKY----------DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1342)
Q Consensus 166 ~~tg~---------------------~i~~~----------~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~ 214 (1342)
+.-+. ...++ .+|.+-|.++.|.| ++..|.+++.|.++.+|.....
T Consensus 223 i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~-- 299 (764)
T KOG1063|consen 223 IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDEN-- 299 (764)
T ss_pred EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCc--
Confidence 65222 11111 36778999999999 8889999999999999963221
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCc-eeEEEec
Q 000703 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYET-PLFSAAL 293 (1342)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~-~l~~~~l 293 (1342)
+.+-.... |+-.. .+ .......+-|+|++..+++-++-|..++|-.+..+ -.....+
T Consensus 300 tGiWv~~v----------RlGe~-gg-----------~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 300 TGIWVDVV----------RLGEV-GG-----------SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred cceEEEEE----------Eeecc-cc-----------cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 11111111 11110 01 01135677899999889999999999999944322 1222233
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhc
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~ 373 (1342)
.++...+.++.+.|.|++|.+++.|.|-||.-+- |.+.. + +|-.+|-+..
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-w--HEiaRPQiHG-------------------------- 407 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-W--HEIARPQIHG-------------------------- 407 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-e--eeeccccccc--------------------------
Confidence 4566778899999999999999999999997654 32211 2 1222332111
Q ss_pred CCCCCCCCCccccCCCCccccccc-ccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcc--cc
Q 000703 374 LDAPHSPSANVDIDSPFEFSDDTL-LLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTN--TN 450 (1342)
Q Consensus 374 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~--l~ 450 (1342)
+++.|-.+ ++ ...++++.+...+|+++.+-.-. +.+. .+....|.|.. +.
T Consensus 408 ----------------yDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv-~~l~---------~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 408 ----------------YDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFV-KSLM---------AICGKCFKGSDELPD 460 (764)
T ss_pred ----------------ccceeeehccC-CceeeecccceeeeeecCcHHHH-HHHH---------HHhCccccCchhccc
Confidence 11111111 11 24678888888899998752211 0000 00000010100 00
Q ss_pred cCcCcCcceeecccc--ccccccCCCCCC---CCCCC----------cccccceeE----EEeeeccccCcceEEEEecC
Q 000703 451 SMASSADVQALEAGK--QLEHVNGSRNRP---SNSTS----------SQADMSFKV----SLDGQLQILSSTVTMLAVPS 511 (1342)
Q Consensus 451 ~~~~~g~~~~~s~~~--~~~~~~~~~~~~---~~~~~----------~~~~~~~k~----~l~g~l~g~~~~vt~la~~p 511 (1342)
+ .-++.+.+.+ +.-+ ..+.|.. ...+. .+.+-++.. --.--|.||.-.|++++.+|
T Consensus 461 g----A~VpaLGLSnKa~~~~-e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~ 535 (764)
T KOG1063|consen 461 G----ANVPALGLSNKAFFPG-ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP 535 (764)
T ss_pred c----cccccccccCCCCccc-ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC
Confidence 0 0011121111 1000 0000000 00000 011111111 01224678999999999998
Q ss_pred CCcccccccCCCCCCCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcE-EEEecCCccccc
Q 000703 512 PSLTATLARGGNYPAVAVPLVALGTQS-----GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRL-VSFSYSQVNEKS 585 (1342)
Q Consensus 512 p~~~~~~~~~~~~~~~~~~llAsGs~D-----GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~l-lS~s~d~~~~~s 585 (1342)
.|+++|++... ..|+||+..+-.....|.+|+-.|+.|+|+||+++ ++++.|
T Consensus 536 ----------------~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD------ 593 (764)
T KOG1063|consen 536 ----------------TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD------ 593 (764)
T ss_pred ----------------CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC------
Confidence 58999998755 36899999888888889999999999999999965 455554
Q ss_pred CcccCEEEEEEcCCCcee--eeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc--ceeee-----ccCce
Q 000703 586 GGYINRLVVTCLRSGINR--AFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP--IMLRS-----LALPF 656 (1342)
Q Consensus 586 g~~~~~i~lwD~~tG~~~--~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~--~~l~~-----l~~~v 656 (1342)
.+..||....+..- .+..+ +.|..-|.+..|+|++.|+|++|+|++|+||.. ... ..+.. +..+|
T Consensus 594 ----Rt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~-~~~~d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 594 ----RTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE-PDLRDKYISRFACLKFSLAV 667 (764)
T ss_pred ----ceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEec-cCchhhhhhhhchhccCCce
Confidence 37888887543321 12232 348888999999999999999999999999998 444 22222 23467
Q ss_pred EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecC
Q 000703 657 TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG 736 (1342)
Q Consensus 657 t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g 736 (1342)
|+++|.|-... ..+..++.|...|.|.+|....
T Consensus 668 TAv~~~~~~~~-----------------------------------------------e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 668 TAVAYLPVDHN-----------------------------------------------EKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred eeEEeeccccc-----------------------------------------------cccceEEEEecccEEEEEeccc
Confidence 88888743111 1235678999999999998641
Q ss_pred C-eeec-----cCCCCCCCccccccceEEEEeec----------C--CEEEEEeCCCcEEEEECC
Q 000703 737 R-RIRD-----FRPKWPSSSFISSDGLITAMAYR----------L--PHVVMGDRSGNIRWWDVT 783 (1342)
Q Consensus 737 ~-~v~d-----~~~~~~~~~~~~~~~~V~~va~d----------g--~~LasGs~DgtI~lWDl~ 783 (1342)
. +... +..+.+ ..++|+..|+-+.|. . ..|++|+.|..+|++++.
T Consensus 701 ~~~~~~~~~~~~~~~l~--~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 701 EHRQVTVGTFNLDTRLC--ATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccceeeeeccccc--cccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1 1110 001111 234677888888883 1 257999999999999874
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=272.10 Aligned_cols=257 Identities=16% Similarity=0.226 Sum_probs=209.8
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEE-cCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFA-SGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
++-+. +...+.++++|++| .+|++ ++..|++|+...++ +.+++.+|.. .|..++|+|+
T Consensus 153 ~~~~~-~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-----------~v~~~~fs~d------ 214 (456)
T KOG0266|consen 153 TLAGH-ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-----------GVSDVAFSPD------ 214 (456)
T ss_pred eeccc-ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccc-----------ceeeeEECCC------
Confidence 44443 34568899999999 77777 56899999998888 8888999998 9999999987
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC 171 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~-~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~ 171 (1342)
|.+|++|+.|++|+|||+ ..+..+.++ .||+. .|++++|+|++ +++++++.|++|+|||+.+|++
T Consensus 215 --------~~~l~s~s~D~tiriwd~~~~~~~~~~l--~gH~~-~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 215 --------GSYLLSGSDDKTLRIWDLKDDGRNLKTL--KGHST-YVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred --------CcEEEEecCCceEEEeeccCCCeEEEEe--cCCCC-ceEEEEecCCC---CEEEEecCCCcEEEEeccCCeE
Confidence 478999999999999999 555888885 69999 99999999987 8999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000703 172 MWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1342)
Q Consensus 172 i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1342)
+.++.+|.+.|++++|+| |++.|++++.||.|++||.....-. ..+. +..+ ..
T Consensus 281 ~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~------------~~~~------------~~ 333 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL--CLKL------------LSGA------------EN 333 (456)
T ss_pred EEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee--eeec------------ccCC------------CC
Confidence 999999999999999999 9999999999999999997552100 0001 1110 00
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc-cceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 252 ~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
.. .+..+.|||+++.++++..|+.+++||+..+..+..+..+... ..+.+....+++.+++++++|++|.+|+..++.
T Consensus 334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 10 2567799999999999999999999999999888777654332 123344446799999999999999999998766
Q ss_pred eee
Q 000703 331 QVH 333 (1342)
Q Consensus 331 ~~~ 333 (1342)
.+.
T Consensus 413 ~~~ 415 (456)
T KOG0266|consen 413 ILQ 415 (456)
T ss_pred hhh
Confidence 433
No 50
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=2.4e-26 Score=274.23 Aligned_cols=253 Identities=12% Similarity=0.113 Sum_probs=212.6
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc-------------------------------
Q 000703 8 PADSWDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL------------------------------- 54 (1342)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~------------------------------- 54 (1342)
.-++|-| +|.... ...++|+++|+++ +||.|. ++.|++|-....
T Consensus 365 ~lpSic~-YT~~nt--~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 365 SLPSICM-YTFHNT--YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCcEEE-EEEEEc--CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3445643 444442 3568999999998 899885 679999986631
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~ 134 (1342)
....+|-||.+ +|..++|+|+. ++|+|++.|++||+|...+..++..+ .||..
T Consensus 442 ~~~~~L~GH~G-----------PVyg~sFsPd~--------------rfLlScSED~svRLWsl~t~s~~V~y--~GH~~ 494 (707)
T KOG0263|consen 442 GTSRTLYGHSG-----------PVYGCSFSPDR--------------RFLLSCSEDSSVRLWSLDTWSCLVIY--KGHLA 494 (707)
T ss_pred ceeEEeecCCC-----------ceeeeeecccc--------------cceeeccCCcceeeeecccceeEEEe--cCCCc
Confidence 12345889998 99999999874 78999999999999999999888774 79988
Q ss_pred CCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000703 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1342)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~ 214 (1342)
||.++.|+|-| .+.||++.|++.++|..+.-.++..+.+|-..|.|++|.| ++..++++|.|.+|++||+.+...
T Consensus 495 -PVwdV~F~P~G---yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 495 -PVWDVQFAPRG---YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred -ceeeEEecCCc---eEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE
Confidence 99999999987 9999999999999999999888888889888999999999 999999999999999999866321
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecC
Q 000703 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALP 294 (1342)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~ 294 (1342)
.+.| .+|...|.+++|||+||+|++++.|+.|.|||+.++..+..+..|
T Consensus 570 ----VRiF---------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 570 ----VRIF---------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred ----EEEe---------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 2222 113345888999999999999999999999999999988776544
Q ss_pred CCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 295 RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
.+.+.++.||+||..||++|.|.+|++||+..
T Consensus 619 --t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 619 --TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 67788999999999999999999999999863
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.5e-25 Score=269.16 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=223.8
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeeecCCCeEEEEEcCCCcEEEEec
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA--VTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~--~~~~l~gH~~~V~~l~fs~d~~llS~s~ 578 (1342)
...|++++|+| +|..+++++.|++|++|++.++. +.+++.+|...|++++|+++++++..+.
T Consensus 159 ~~sv~~~~fs~----------------~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s 222 (456)
T KOG0266|consen 159 CPSVTCVDFSP----------------DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS 222 (456)
T ss_pred cCceEEEEEcC----------------CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec
Confidence 67899999998 58889999999999999998888 7888899999999999999997664333
Q ss_pred CCcccccCcccCEEEEEEcC-CCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---C
Q 000703 579 SQVNEKSGGYINRLVVTCLR-SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---L 654 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~-tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~---~ 654 (1342)
.|.+|++||+. .+. .++++++ |...|++++|+|+|+++++|+.|++|+|||+ +++++++.++ .
T Consensus 223 ---------~D~tiriwd~~~~~~--~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~-~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 223 ---------DDKTLRIWDLKDDGR--NLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV-RTGECVRKLKGHSD 289 (456)
T ss_pred ---------CCceEEEeeccCCCe--EEEEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEec-cCCeEEEeeeccCC
Confidence 35699999994 445 6788886 9999999999999999999999999999999 7899988877 3
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 655 ~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
+++++.|+++ +..+++++.||.|++||+
T Consensus 290 ~is~~~f~~d----------------------------------------------------~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 290 GISGLAFSPD----------------------------------------------------GNLLVSASYDGTIRVWDL 317 (456)
T ss_pred ceEEEEECCC----------------------------------------------------CCEEEEcCCCccEEEEEC
Confidence 5677888754 456888899999999999
Q ss_pred cCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEE---EEEecCCCC
Q 000703 735 HGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRR---IKFSPVVPG 808 (1342)
Q Consensus 735 ~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~---v~fSPd~~g 808 (1342)
.+...+ ....+.+.. ... .++.+.| +|++|+++..|+++++||+..+. ...+.+|...+++ ..++++ +
T Consensus 318 ~~~~~~-~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 391 (456)
T KOG0266|consen 318 ETGSKL-CLKLLSGAE--NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG--G 391 (456)
T ss_pred CCCcee-eeecccCCC--CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC--C
Confidence 765521 000111110 111 4778888 99999999999999999999887 5778888876422 233344 3
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEe--CCCcEEEEEcc
Q 000703 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG--ADSSFRLIEVN 882 (1342)
Q Consensus 809 ~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s--~DgtIrvWdi~ 882 (1342)
..+.+++.|+.|.+||+.++..+ ..+ .+|. ...+..++|+|. .. ++++++ .|+.+++|...
T Consensus 392 ----~~i~sg~~d~~v~~~~~~s~~~~-~~l-~~h~-~~~~~~~~~~~~-----~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 ----KLIYSGSEDGSVYVWDSSSGGIL-QRL-EGHS-KAAVSDLSSHPT-----EN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ----CeEEEEeCCceEEEEeCCccchh-hhh-cCCC-CCceeccccCCC-----cC-eeeecCcCCCceEEEecCC
Confidence 67899999999999999987643 333 6774 367999999997 33 467777 79999999754
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-25 Score=265.07 Aligned_cols=289 Identities=17% Similarity=0.274 Sum_probs=232.2
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEe
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s 577 (1342)
+.-++.|-.++|+| ..+++.++-.+|.|++||..-+.++..|..|.++|++|.|.|.+.+..
T Consensus 6 EskSsRvKglsFHP----------------~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFV-- 67 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHP----------------KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFV-- 67 (1202)
T ss_pred hcccccccceecCC----------------CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEE--
Confidence 33467888899998 479999999999999999999999999999999999999999885443
Q ss_pred cCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc--
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP-- 655 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~-- 655 (1342)
+|+.|-+|+||+..+.+ ++-++.| |.+.|+.+.|++.--+++++|.|.||+||+. .+++++..+.++
T Consensus 68 -------SGGDDykIkVWnYk~rr--clftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNw-qsr~~iavltGHnH 136 (1202)
T KOG0292|consen 68 -------SGGDDYKIKVWNYKTRR--CLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNW-QSRKCIAVLTGHNH 136 (1202)
T ss_pred -------ecCCccEEEEEecccce--ehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEec-cCCceEEEEecCce
Confidence 34445699999998877 6666677 8999999999999999999999999999999 899999887743
Q ss_pred -eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 656 -FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 656 -vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
|.+..|+|. .+.+++++.|.+|++||+
T Consensus 137 YVMcAqFhpt----------------------------------------------------EDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 137 YVMCAQFHPT----------------------------------------------------EDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred EEEeeccCCc----------------------------------------------------cceEEEecccceEEEEee
Confidence 355566542 467899999999999999
Q ss_pred cCCeeeccCC---------------CCCC------CccccccceEEEEeecC--CEEEEEeCCCcEEEEECCCCc---ee
Q 000703 735 HGRRIRDFRP---------------KWPS------SSFISSDGLITAMAYRL--PHVVMGDRSGNIRWWDVTTGH---SS 788 (1342)
Q Consensus 735 ~g~~v~d~~~---------------~~~~------~~~~~~~~~V~~va~dg--~~LasGs~DgtI~lWDl~tg~---~~ 788 (1342)
.|-+-+...+ .++. ..+.||+.-|+-+||.+ .+++||+.|+.|++|.++..+ .-
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 7754332111 0110 11348999999999955 899999999999999997644 45
Q ss_pred eeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEE
Q 000703 789 QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLC 868 (1342)
Q Consensus 789 ~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~ 868 (1342)
+..||.+.|.++-|+|.. ..|++.|.|++|||||+..+..+ .+++.. +.+.+-++-+|. .+ |.
T Consensus 245 tcrgH~nnVssvlfhp~q------~lIlSnsEDksirVwDm~kRt~v-~tfrre---ndRFW~laahP~----lN---Lf 307 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQ------DLILSNSEDKSIRVWDMTKRTSV-QTFRRE---NDRFWILAAHPE----LN---LF 307 (1202)
T ss_pred hhhcccCCcceEEecCcc------ceeEecCCCccEEEEecccccce-eeeecc---CCeEEEEEecCC----cc---ee
Confidence 678999999999999972 46889999999999999988755 344222 356778888886 34 45
Q ss_pred EEeCCCcEEEEEccCC
Q 000703 869 IAGADSSFRLIEVNTS 884 (1342)
Q Consensus 869 s~s~DgtIrvWdi~~~ 884 (1342)
.|+.|+-+.||.++..
T Consensus 308 AAgHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 308 AAGHDSGMIVFKLERE 323 (1202)
T ss_pred eeecCCceEEEEEccc
Confidence 7899999999988743
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.8e-24 Score=238.88 Aligned_cols=284 Identities=18% Similarity=0.235 Sum_probs=226.2
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1342)
++.| |...+.+++|+|++ +|++++ ++.|.+||..+++....+..|.. .|+.+.|+|+
T Consensus 4 ~~~~--h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~-------- 62 (289)
T cd00200 4 TLKG--HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-----------PVRDVAASAD-------- 62 (289)
T ss_pred Hhcc--cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-----------ceeEEEECCC--------
Confidence 4555 66789999999997 788776 78999999999988888999998 8999999986
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE
Q 000703 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK 174 (1342)
Q Consensus 95 ~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~ 174 (1342)
+.+|++++.||.|++||+.+++.+..+ .+|.. .|.+++|++++ .++++++.++.|.+||+.+++.+..
T Consensus 63 ------~~~l~~~~~~~~i~i~~~~~~~~~~~~--~~~~~-~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 63 ------GTYLASGSSDKTIRLWDLETGECVRTL--TGHTS-YVSSVAFSPDG---RILSSSSRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred ------CCEEEEEcCCCeEEEEEcCcccceEEE--eccCC-cEEEEEEcCCC---CEEEEecCCCeEEEEECCCcEEEEE
Confidence 468999999999999999988777765 46666 89999999975 7888888899999999998998888
Q ss_pred EeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000703 175 YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1342)
Q Consensus 175 ~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1342)
+..+.+.+.+++|+| ++..+++++.+|.+++||+..... ...+. .+..
T Consensus 131 ~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~---------------------------~~~~ 178 (289)
T cd00200 131 LRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC----VATLT---------------------------GHTG 178 (289)
T ss_pred eccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccc----ceeEe---------------------------cCcc
Confidence 887778999999999 678888877799999999753111 11110 0122
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
.+..++|+|+++.+++++.++.|.+||+.+++.+..+.. +...+..+.++|++.++++++.||.|++|+..++.....
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 466789999999999999999999999999888766532 335778888999988999998899999999987765444
Q ss_pred EeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEE
Q 000703 335 MCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVW 414 (1342)
Q Consensus 335 ~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~ 414 (1342)
+.. + ...+..+.++++ +..|++++.||.|+
T Consensus 257 ~~~-~-----------~~~i~~~~~~~~--------------------------------------~~~l~~~~~d~~i~ 286 (289)
T cd00200 257 LSG-H-----------TNSVTSLAWSPD--------------------------------------GKRLASGSADGTIR 286 (289)
T ss_pred ccc-c-----------CCcEEEEEECCC--------------------------------------CCEEEEecCCCeEE
Confidence 411 0 113444444432 45899999999999
Q ss_pred EEE
Q 000703 415 NWL 417 (1342)
Q Consensus 415 lWd 417 (1342)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.8e-25 Score=252.36 Aligned_cols=276 Identities=14% Similarity=0.209 Sum_probs=222.7
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEe
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s 577 (1342)
..++..|-+|.|+| ..+++..+-.+|+|.|||.+|..+++.|.+-..+|++..|.+--..+..+
T Consensus 10 ~~rSdRVKsVd~HP----------------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G 73 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHP----------------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG 73 (794)
T ss_pred hccCCceeeeecCC----------------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe
Confidence 34788999999999 47899999999999999999999999999999999999998765545433
Q ss_pred cCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc--
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP-- 655 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~-- 655 (1342)
.| |..|+|++..|++ .+..+.. |.+.|++|+++|..-|++++|.|-+||+||-.+.-.|.++++++
T Consensus 74 sD---------D~~IrVfnynt~e--kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 74 SD---------DMQIRVFNYNTGE--KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cC---------CceEEEEecccce--eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 33 4689999999998 5666554 99999999999999999999999999999995455677777743
Q ss_pred -eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 656 -FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 656 -vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
|..++|.|. +...||+++.|++|++|.+
T Consensus 142 yVMqv~fnPk---------------------------------------------------D~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 142 YVMQVAFNPK---------------------------------------------------DPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEEEEEecCC---------------------------------------------------CccceeeeeccccEEEEEc
Confidence 467888753 1356999999999999998
Q ss_pred cCCeeeccCCCCCCCccccccceEEEEee----cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCC
Q 000703 735 HGRRIRDFRPKWPSSSFISSDGLITAMAY----RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 735 ~g~~v~d~~~~~~~~~~~~~~~~V~~va~----dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
..... .-+|.+|..-|+||.| |.++|++|+.|.+|+|||.+++. .+++.||...|..+.|+|..
T Consensus 171 gs~~~--------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l--- 239 (794)
T KOG0276|consen 171 GSPHP--------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL--- 239 (794)
T ss_pred CCCCC--------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC---
Confidence 44322 1134578888999999 56799999999999999999988 47899999999999999985
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcE
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSF 876 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtI 876 (1342)
..+++++.|||+|||...+-+ +..+|.-+ ..+|++++-.+. ++ .++.|.+.|.|
T Consensus 240 ---piiisgsEDGTvriWhs~Ty~-lE~tLn~g---leRvW~I~~~k~----~~--~i~vG~Deg~i 293 (794)
T KOG0276|consen 240 ---PIIISGSEDGTVRIWNSKTYK-LEKTLNYG---LERVWCIAAHKG----DG--KIAVGFDEGSV 293 (794)
T ss_pred ---cEEEEecCCccEEEecCccee-hhhhhhcC---CceEEEEeecCC----CC--eEEEeccCCcE
Confidence 368999999999999988865 43444222 367888887765 34 24566665654
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=224.07 Aligned_cols=213 Identities=12% Similarity=0.173 Sum_probs=172.4
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC---eEEEEecCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR---SVVLWIDPDP 131 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g---~~~~~l~~~~ 131 (1342)
-.++.+++|++ +|..++|+|.. |.+||||+.|..|+||+...+ .+...+ ..+
T Consensus 5 ~~~~~~~gh~~-----------r~W~~awhp~~-------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-d~~ 59 (312)
T KOG0645|consen 5 ILEQKLSGHKD-----------RVWSVAWHPGK-------------GVILASCGTDKAVRIWSTSSGDSWTCKTVL-DDG 59 (312)
T ss_pred eeEEeecCCCC-----------cEEEEEeccCC-------------ceEEEeecCCceEEEEecCCCCcEEEEEec-ccc
Confidence 35788999998 99999999851 579999999999999998743 455554 357
Q ss_pred CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC--eEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEe
Q 000703 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA--SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg--~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~ 209 (1342)
|++ .|..++|+|.+ ++||+++-|.++.||.=..+ +++.++.+|...|.|++|++ +++.||+++.|..|-+|.+
T Consensus 60 hkr-sVRsvAwsp~g---~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 60 HKR-SVRSVAWSPHG---RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred chh-eeeeeeecCCC---cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEe
Confidence 888 99999999998 89999999999999986555 47888999888999999999 9999999999999999987
Q ss_pred cCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcc-CC--c
Q 000703 210 LGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ-YE--T 286 (1342)
Q Consensus 210 ~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~-t~--~ 286 (1342)
..+ .+|.+. .-|. .|.-.|..+.|+|.-..|+++++|++|++|+-+ .+ +
T Consensus 135 ded-------dEfec~------aVL~---------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 135 DED-------DEFECI------AVLQ---------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred cCC-------CcEEEE------eeec---------------cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 542 223221 0011 112246678999988899999999999999988 33 3
Q ss_pred eeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 287 PLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 287 ~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
+..++. ++...+..++|.+.|..|+|++.|++|+||...
T Consensus 187 c~~tl~--g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 187 CVQTLD--GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEEec--CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 455443 445678899999999999999999999999854
No 56
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=9.1e-25 Score=238.55 Aligned_cols=303 Identities=15% Similarity=0.136 Sum_probs=231.9
Q ss_pred CCCccccc----cccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEE
Q 000703 8 PADSWDCN----FMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAV 81 (1342)
Q Consensus 8 ~~~~~~~~----~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v 81 (1342)
|.+.|-.+ +.+.| |-++|.|+|..|.+ .+|+|+ +.+|.|||..++++..+|.||.. .|..|
T Consensus 133 ~rPeWHapwKl~rVi~g--HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-----------~vr~v 199 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISG--HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-----------TVRGV 199 (460)
T ss_pred CCccccCcceehhhhhh--ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh-----------eeeee
Confidence 45555554 67778 55679999999987 899986 57999999999999999999998 89999
Q ss_pred EEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeE
Q 000703 82 KWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1342)
Q Consensus 82 ~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1342)
++|+. ..+|.|++.|++|+.||+...+.++. +.||-. +|++|+..|.- ++|++++.|.++
T Consensus 200 avS~r--------------HpYlFs~gedk~VKCwDLe~nkvIR~--YhGHlS-~V~~L~lhPTl---dvl~t~grDst~ 259 (460)
T KOG0285|consen 200 AVSKR--------------HPYLFSAGEDKQVKCWDLEYNKVIRH--YHGHLS-GVYCLDLHPTL---DVLVTGGRDSTI 259 (460)
T ss_pred eeccc--------------CceEEEecCCCeeEEEechhhhhHHH--hccccc-eeEEEeccccc---eeEEecCCcceE
Confidence 99975 57899999999999999999998887 579988 99999999976 899999999999
Q ss_pred EEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccc
Q 000703 162 SLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAG 241 (1342)
Q Consensus 162 ~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~ 241 (1342)
++||++|...+..+.+|..+|..+.|.|+|+ ++.++++|++|++||+... |... .
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-------kt~~---------t-------- 314 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-------KTMI---------T-------- 314 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-------ceeE---------e--------
Confidence 9999999999999999999999999999776 5779999999999998652 2111 0
Q ss_pred cCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcE
Q 000703 242 AASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKL 321 (1342)
Q Consensus 242 s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI 321 (1342)
...+...+..++.+|.--..++++ ...|.-|++..|..+..+..+ .+.+..+.. -+.+++++|+++|+|
T Consensus 315 -------lt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh--~~iintl~~-nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 315 -------LTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGH--NAIINTLSV-NSDGVLVSGGDNGSI 383 (460)
T ss_pred -------eecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccccc--cceeeeeee-ccCceEEEcCCceEE
Confidence 112333467789999755555544 456899999999888765433 334444433 345589999999999
Q ss_pred EEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCc
Q 000703 322 SIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSK 401 (1342)
Q Consensus 322 ~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (1342)
..||.++|...+.. +. +...|.......|++..|. ..|
T Consensus 384 ~fwdwksg~nyQ~~---~t-~vqpGSl~sEagI~as~fD--------------------------------------ktg 421 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRG---QT-IVQPGSLESEAGIFASCFD--------------------------------------KTG 421 (460)
T ss_pred EEEecCcCcccccc---cc-cccCCccccccceeEEeec--------------------------------------ccC
Confidence 99999998633222 11 0111222222233433333 237
Q ss_pred cEEEEEEcCCcEEEEEcccc
Q 000703 402 THLISISDDGKVWNWLLTAE 421 (1342)
Q Consensus 402 ~~las~s~DG~v~lWdl~~~ 421 (1342)
.+|+++..|.+|++|.-...
T Consensus 422 ~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCcceEEEecccc
Confidence 79999999999999975443
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-22 Score=240.19 Aligned_cols=269 Identities=12% Similarity=0.157 Sum_probs=207.3
Q ss_pred CCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 26 NFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.+..++|+|.. .|.++- .+.|.+||-+=+.++..|.+|.+ +|..|.|+|+ +.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-----------pVRgv~FH~~--------------qpl 65 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-----------PVRGVDFHPT--------------QPL 65 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCC-----------ccceeeecCC--------------CCe
Confidence 36789999998 666664 47999999999999999999999 9999999986 578
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceE
Q 000703 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLS 183 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~ 183 (1342)
++||++|-+|+||++.+.+++.+ +.||-. -|..+.|.+.- -.++|+|.|.||+|||.++++|+..+++|...|.
T Consensus 66 FVSGGDDykIkVWnYk~rrclft--L~GHlD-YVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLFT--LLGHLD-YVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEecCCccEEEEEecccceehhh--hccccc-eeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999999877 479999 79999999876 5788999999999999999999999999999999
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhh-hcccc-CCC----CCCCCcCccceE
Q 000703 184 CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERE-LSAGA-ASL----SPASGLFPLYMV 257 (1342)
Q Consensus 184 ~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~-~~~~s-~~~----~p~~~~~~~~v~ 257 (1342)
|.+|.| ....++++|.|.+|++||++|-.. -..+.. +.-.++... .+..- |++ +--..+|--.|.
T Consensus 140 cAqFhp-tEDlIVSaSLDQTVRVWDisGLRk-------k~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN 210 (1202)
T KOG0292|consen 140 CAQFHP-TEDLIVSASLDQTVRVWDISGLRK-------KNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN 210 (1202)
T ss_pred eeccCC-ccceEEEecccceEEEEeecchhc-------cCCCCC-CchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence 999999 788999999999999999988111 000000 000000000 00000 000 000122323466
Q ss_pred EEEEccCCCceEEEEcCCeEEEEEccCCceeEEEe-cCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 258 KFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAA-LPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 258 ~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~-l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
-++|+|.-.-+++++.||.|++|.....+. ..+. ..+|..++.+++|.|..+.+.|.|+|++||+||......++++
T Consensus 211 waAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 211 WAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 679999999999999999999999865433 2222 2345577889999999999999999999999998755545554
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=251.73 Aligned_cols=209 Identities=16% Similarity=0.229 Sum_probs=170.7
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-RSVVLWIDPDPNP 133 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~-g~~~~~l~~~~h~ 133 (1342)
+.+.++.||+. .|++++|.|- .+.+|+||+.|++|+|||+.. +.++++| .||.
T Consensus 205 k~~~~~~gH~k-----------gvsai~~fp~-------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf--~gH~ 258 (503)
T KOG0282|consen 205 KLSHNLSGHTK-----------GVSAIQWFPK-------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTF--KGHR 258 (503)
T ss_pred hheeeccCCcc-----------ccchhhhccc-------------eeeEEEecCCCceEEEEEEecCcceehhh--hcch
Confidence 45789999998 8999999984 368999999999999999866 8899985 7899
Q ss_pred CCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCc
Q 000703 134 KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1342)
Q Consensus 134 ~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~ 213 (1342)
+ +|.+++|+.++ .-+++++-|.+|++||++||+++.++.. ...++|+.|.|.+...+.+|+.|+.|+.||.+...
T Consensus 259 k-~Vrd~~~s~~g---~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 259 K-PVRDASFNNCG---TSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred h-hhhhhhccccC---CeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 9 99999999987 6788899999999999999999988766 56889999999666889999999999999975421
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEec
Q 000703 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l 293 (1342)
+ ++...+ +...+..+.|-|+|+..++.+.|++++||+-.++-.+.-+.-
T Consensus 334 ---v-------------vqeYd~---------------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~ 382 (503)
T KOG0282|consen 334 ---V-------------VQEYDR---------------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD 382 (503)
T ss_pred ---H-------------HHHHHh---------------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc
Confidence 0 111212 123478889999999999999999999999998876643322
Q ss_pred -CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 294 -PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 294 -~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
+.+..|. +...|++.++++=+.|..|-+....
T Consensus 383 ~~~hsmP~--~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 383 PEMHTMPC--LTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhccCcc--eecCCCCCeehhhccCceEEEEecc
Confidence 2333443 3445899999999999999988754
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=232.12 Aligned_cols=209 Identities=10% Similarity=0.154 Sum_probs=176.1
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000703 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1342)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~ 135 (1342)
.+-.|++|++ .|..++|+|+ |..||||+.|..|.+|++. |.+.....+.+|++
T Consensus 39 p~m~l~gh~g-----------eI~~~~F~P~--------------gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsg- 91 (338)
T KOG0265|consen 39 PIMLLPGHKG-----------EIYTIKFHPD--------------GSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSG- 91 (338)
T ss_pred hhhhcCCCcc-----------eEEEEEECCC--------------CCeEeecCCcceEEEEecc-ccccceeeeccccc-
Confidence 3556899999 9999999986 5789999999999999974 44544444679999
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~ 215 (1342)
.|.++.|.+++ ..|++++.|.+|+.||+++|+++.++.+|..-++.+.-.-+....++++++||++++||++.+..
T Consensus 92 AVM~l~~~~d~---s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~- 167 (338)
T KOG0265|consen 92 AVMELHGMRDG---SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA- 167 (338)
T ss_pred eeEeeeeccCC---CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-
Confidence 99999999987 78999999999999999999999999998888888775556678899999999999999865322
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCC
Q 000703 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1342)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1342)
+|.+. ..-.+.+++|.-++.++.+++-|+.|++||+..+..+.++. +
T Consensus 168 ---~~t~~----------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls--G 214 (338)
T KOG0265|consen 168 ---IKTFE----------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS--G 214 (338)
T ss_pred ---hhccc----------------------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEee--c
Confidence 11110 01246788999999999999999999999998888877665 4
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
+..++..+.-+|+|.++.+-+.|.+|++||.+.
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 557888999999999999999999999999875
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-24 Score=227.33 Aligned_cols=258 Identities=17% Similarity=0.272 Sum_probs=200.3
Q ss_pred CCCcEEEEeCCCCcEEEEee--ecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCC
Q 000703 537 QSGAVDVVDVSANAVTASFS--VHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPE 612 (1342)
Q Consensus 537 ~DGtI~lWDl~tg~~~~~l~--gH~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h 612 (1342)
..|.+.|-|+..++-+.++. --...+-+++|++.. .+++++.| +.++|||+. -...|++.++. |
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD----------GSLrl~d~~-~~s~Pi~~~kE-H 103 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD----------GSLRLFDLT-MPSKPIHKFKE-H 103 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC----------ceEEEeccC-CCCcchhHHHh-h
Confidence 46899999986554444443 235788999998865 55555544 589999953 23457887777 8
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCCEEEEeccCCcceeeeccCc---eEEEEEcCCCCCCCCCCCCCCccccccCCCCCc
Q 000703 613 RAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIMLRSLALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKAD 688 (1342)
Q Consensus 613 ~~~I~~i~~Spd-g~~Las~s~D~tIkvWDl~kt~~~l~~l~~~---vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i 688 (1342)
...|.++.+++. ++.++++|.|++||+||. ..++-++++.++ |....|+|.
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~-~r~~Sv~Tf~gh~~~Iy~a~~sp~------------------------ 158 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDP-NRPNSVQTFNGHNSCIYQAAFSPH------------------------ 158 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecC-CCCcceEeecCCccEEEEEecCCC------------------------
Confidence 899999999985 566788899999999999 567777777643 566778753
Q ss_pred cCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec--CCeeeccCCCCCCCccccccceEEEEee---
Q 000703 689 TTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY--- 763 (1342)
Q Consensus 689 ~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~--g~~v~d~~~~~~~~~~~~~~~~V~~va~--- 763 (1342)
....|++++.||++++||++ |+.+. + ..|...|.++.|
T Consensus 159 ---------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~-----i-----~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 159 ---------------------------IPNLFASASGDGTLRLWDVRSPGKFMS-----I-----EAHNSEILCCDWSKY 201 (311)
T ss_pred ---------------------------CCCeEEEccCCceEEEEEecCCCceeE-----E-----EeccceeEeeccccc
Confidence 13679999999999999984 33321 1 146677999999
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccC
Q 000703 764 RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQ 841 (1342)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~ 841 (1342)
+..+|++|+.|+.||+||++.-+ +..+.+|.-.|++|+|||... ..||++++|-|+||||...++.+..+. .
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~-----~lLaSasYDmT~riw~~~~~ds~~e~~-~ 275 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA-----SLLASASYDMTVRIWDPERQDSAIETV-D 275 (311)
T ss_pred CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh-----hHhhhccccceEEecccccchhhhhhh-h
Confidence 77899999999999999998754 567899999999999999843 579999999999999998777554443 3
Q ss_pred CCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEc
Q 000703 842 PQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1342)
Q Consensus 842 gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi 881 (1342)
.|+ ..|.+++|++- ++-++|+.+.|+.+.||+-
T Consensus 276 ~Ht--EFv~g~Dws~~-----~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 276 HHT--EFVCGLDWSLF-----DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccc--eEEeccccccc-----cCceeeecccccceeeecc
Confidence 444 68999999986 3336899999999999984
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=238.37 Aligned_cols=282 Identities=16% Similarity=0.190 Sum_probs=216.2
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC---cEEEEeeecCCCeEEEEEcCCCc
Q 000703 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN---AVTASFSVHNGTVRGLRWLGNSR 572 (1342)
Q Consensus 496 ~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg---~~~~~l~gH~~~V~~l~fs~d~~ 572 (1342)
.++.|+..|+.+.|++ +|++||+|+.|.|..||++... ++.+++.+|..+|.-|.|+||.+
T Consensus 219 il~~htdEVWfl~FS~----------------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr 282 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH----------------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR 282 (519)
T ss_pred hHhhCCCcEEEEEEcC----------------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC
Confidence 3567999999999998 6999999999999999998644 35789999999999999999886
Q ss_pred -EEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeee
Q 000703 573 -LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1342)
Q Consensus 573 -llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~ 651 (1342)
+++++.+. .+++||+.||.. ++.....+...+.+++|.|||..+++|+.|+++-.||+ .|..+..
T Consensus 283 yLlaCg~~e----------~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl--Dgn~~~~ 348 (519)
T KOG0293|consen 283 YLLACGFDE----------VLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL--DGNILGN 348 (519)
T ss_pred eEEecCchH----------heeeccCCcchh--hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC--Ccchhhc
Confidence 45555543 589999999984 33333335678899999999999999999999999998 4554432
Q ss_pred ccC----ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCC
Q 000703 652 LAL----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG 727 (1342)
Q Consensus 652 l~~----~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dg 727 (1342)
.+. .+..++.+ ++++.+.....|.
T Consensus 349 W~gvr~~~v~dlait----------------------------------------------------~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAIT----------------------------------------------------YDGKYVLLVTVDK 376 (519)
T ss_pred ccccccceeEEEEEc----------------------------------------------------CCCcEEEEEeccc
Confidence 221 12233333 2356677777999
Q ss_pred CEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeecccccc--EEEEEE
Q 000703 728 ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREG--IRRIKF 802 (1342)
Q Consensus 728 tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~--V~~v~f 802 (1342)
.|++++.+.+.-+. .. .-...|++++. ||+++.+-=.+..|.+||++..+ .+++.||+.. |-.-.|
T Consensus 377 ~i~l~~~e~~~dr~---li------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 377 KIRLYNREARVDRG---LI------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ceeeechhhhhhhc---cc------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 99999986543221 01 11134666666 88888888899999999999766 6788999864 444456
Q ss_pred ecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 803 SPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
.-. ....+|+|+.|+.|.||+..++.++ ..| .||. ..|..|+|+|. ++..+||||+||+||+|...
T Consensus 448 gg~-----~~~fiaSGSED~kvyIWhr~sgkll-~~L-sGHs--~~vNcVswNP~-----~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGG-----NDKFIASGSEDSKVYIWHRISGKLL-AVL-SGHS--KTVNCVSWNPA-----DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCC-----CcceEEecCCCceEEEEEccCCcee-Eee-cCCc--ceeeEEecCCC-----CHHHhhccCCCCeEEEecCC
Confidence 433 2268999999999999999999865 345 8997 67999999997 56679999999999999865
No 62
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=9.5e-22 Score=223.01 Aligned_cols=505 Identities=16% Similarity=0.197 Sum_probs=326.2
Q ss_pred CCCCCCceEeCCCC-eEEEEc--C-------CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 23 SRNNFGSADLSPSG-LLAFAS--G-------SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs--~-------~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
|.+.+.|++.+|+- ++|+|- + -+|+|||..+.+.+++|..-.. .|++|+||+-+
T Consensus 103 H~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-----------GV~~vaFsk~~----- 166 (626)
T KOG2106|consen 103 HNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-----------GVTCVAFSKIN----- 166 (626)
T ss_pred CCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-----------cceeeeecccC-----
Confidence 55668899999998 788762 1 2699999999999999875444 79999999853
Q ss_pred CCCCCCCCCcEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe
Q 000703 93 LSTEPGSSHLLLAAADR--HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS 170 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~--dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~ 170 (1342)
.|.+|+.-+. +.-.-|||...+...... ..... .|....|.|.++ .++++++ .+.+..|+.++|.
T Consensus 167 -------~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v--k~sne-~v~~a~FHPtd~--nliit~G-k~H~~Fw~~~~~~ 233 (626)
T KOG2106|consen 167 -------GGSLLCAVDDSNPHMLSVWDWQKKAKLGPV--KTSNE-VVFLATFHPTDP--NLIITCG-KGHLYFWTLRGGS 233 (626)
T ss_pred -------CCceEEEecCCCccccchhhchhhhccCcc--eeccc-eEEEEEeccCCC--cEEEEeC-CceEEEEEccCCc
Confidence 4677777664 356779999877655442 22234 788899999873 6666665 7889999998886
Q ss_pred EEEEE---eC-CCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCC
Q 000703 171 CMWKY---DA-SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLS 246 (1342)
Q Consensus 171 ~i~~~---~~-~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~ 246 (1342)
...+. .. ....|.|++|.+ ++ .++++..+|+|.+|+..+. .+ .|.
T Consensus 234 l~k~~~~fek~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~---~~-~k~------------------------- 282 (626)
T KOG2106|consen 234 LVKRQGIFEKREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTN---RI-SKQ------------------------- 282 (626)
T ss_pred eEEEeeccccccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCc---eE-EeE-------------------------
Confidence 54432 22 135788999999 55 4668888999999975321 11 111
Q ss_pred CCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000703 247 PASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 247 p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1342)
..+|+..|.+++...+| .|++++-||.|..|| ..-+.++.+.++...+++..++... ++ |+.|-.-..|--=..
T Consensus 283 --~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 283 --VHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTL 356 (626)
T ss_pred --eeecCCceEEEEEecCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCC-Cc-EEEeeccceEEEeee
Confidence 01355567788889998 577799999999999 4445566666766667777776532 22 555544444432223
Q ss_pred cCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEE
Q 000703 327 KEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLIS 406 (1342)
Q Consensus 327 ~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las 406 (1342)
..+-.+.++ |+.+ .++..+.-|+ ...+++
T Consensus 357 ~~~f~~~v~----------gh~d---elwgla~hps--------------------------------------~~q~~T 385 (626)
T KOG2106|consen 357 ENGFTLTVQ----------GHGD---ELWGLATHPS--------------------------------------KNQLLT 385 (626)
T ss_pred cCCceEEEE----------eccc---ceeeEEcCCC--------------------------------------hhheee
Confidence 322211111 1000 2222222221 347899
Q ss_pred EEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccc
Q 000703 407 ISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQAD 486 (1342)
Q Consensus 407 ~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1342)
.+.|+.+++|+ ..+.+- ..
T Consensus 386 ~gqdk~v~lW~--~~k~~w--------------------------------------t~--------------------- 404 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKLEW--------------------------------------TK--------------------- 404 (626)
T ss_pred ccCcceEEEcc--CCceeE--------------------------------------EE---------------------
Confidence 99999999998 211100 00
Q ss_pred cceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEE
Q 000703 487 MSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLR 566 (1342)
Q Consensus 487 ~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~ 566 (1342)
+ ...++-|+.|+| .| .||.|+..|...|.|.++..++.. ..-+++++.++
T Consensus 405 ------~------~~d~~~~~~fhp----------------sg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ 454 (626)
T KOG2106|consen 405 ------I------IEDPAECADFHP----------------SG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVR 454 (626)
T ss_pred ------E------ecCceeEeeccC----------------cc-eEEEeeccceEEEEecccceeEEE-EecCCceEEEE
Confidence 0 124677889998 35 899999999999999998555443 33378999999
Q ss_pred EcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc
Q 000703 567 WLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP 646 (1342)
Q Consensus 567 fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~ 646 (1342)
|+|+|.+++. |+.||.|.|+-+..+..+..+. ...+.++|+.+.||+|++||.+-+.|-.|-.|.. ...
T Consensus 455 ysp~G~~lAv---------gs~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~~ 523 (626)
T KOG2106|consen 455 YSPDGAFLAV---------GSHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SEC 523 (626)
T ss_pred EcCCCCEEEE---------ecCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecCCCceEEeccCceEEEEEcc-ccC
Confidence 9999988864 4557789998885432223332 2335589999999999999999999999999954 222
Q ss_pred ceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecC
Q 000703 647 IMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALAN 726 (1342)
Q Consensus 647 ~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~D 726 (1342)
..+.. +..++|........+. ... .++|. +.+. .......+.+|++...
T Consensus 524 ~~~ts----~kDvkW~t~~c~lGF~------v~g--------~s~~t--~i~a-----------~~rs~~~~~lA~gdd~ 572 (626)
T KOG2106|consen 524 KQITS----VKDVKWATYTCTLGFE------VFG--------GSDGT--DINA-----------VARSHCEKLLASGDDF 572 (626)
T ss_pred cccce----ecceeeeeeEEEEEEE------Eec--------ccCCc--hHHH-----------hhhhhhhhhhhccccC
Confidence 22222 2234443110000000 000 00000 0000 0111345678999999
Q ss_pred CCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEEC
Q 000703 727 GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDV 782 (1342)
Q Consensus 727 gtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl 782 (1342)
|.|++|..--.. ++-+.+...+|.+-|++|+| +..++++.+.|..|..|++
T Consensus 573 g~v~lf~yPc~s-----~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 573 GKVHLFSYPCSS-----PRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceEEEEccccCC-----CcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999752211 12223334478888999999 5567777669999999986
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=9.9e-23 Score=266.65 Aligned_cols=244 Identities=12% Similarity=0.128 Sum_probs=189.3
Q ss_pred CCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc----c----eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 23 SRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL----Q----LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~----~----~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
|.+.+.+++|+|+| ++|+|+ ++.|+|||..+. . .+..+.+|. .|.+++|+|.
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------~v~~l~~~~~------ 543 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS------------KLSGICWNSY------ 543 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC------------ceeeEEeccC------
Confidence 45568899999999 788765 689999997542 1 122333332 7999999974
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM 172 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i 172 (1342)
.+.+||+|+.||+|+|||+.+++.+..+ .+|.+ +|.+++|+|.+ +.+|++++.|++|++||+.++.++
T Consensus 544 -------~~~~las~~~Dg~v~lWd~~~~~~~~~~--~~H~~-~V~~l~~~p~~--~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 544 -------IKSQVASSNFEGVVQVWDVARSQLVTEM--KEHEK-RVWSIDYSSAD--PTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred -------CCCEEEEEeCCCeEEEEECCCCeEEEEe--cCCCC-CEEEEEEcCCC--CCEEEEEcCCCEEEEEECCCCcEE
Confidence 3578999999999999999999888775 67888 99999999743 279999999999999999999988
Q ss_pred EEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcC
Q 000703 173 WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLF 252 (1342)
Q Consensus 173 ~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~ 252 (1342)
..+.. ...+.++.|.+.++..|++++.||.|++||+..... . ... + ..+
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~--~~~------------~---------------~~h 660 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-P--LCT------------M---------------IGH 660 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-c--ceE------------e---------------cCC
Confidence 77775 568899999776899999999999999999754210 0 000 0 112
Q ss_pred ccceEEEEEccCCCceEEEEcCCeEEEEEccCC------ceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000703 253 PLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE------TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 253 ~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~------~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1342)
...+..+.|+ ++..+++++.|++|+|||+..+ ..+..+.. +......+.++|++.+|++|+.||+|++|+.
T Consensus 661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 2346778897 6789999999999999999753 34555442 3344556778899999999999999999998
Q ss_pred cCCc
Q 000703 327 KEGE 330 (1342)
Q Consensus 327 ~~g~ 330 (1342)
....
T Consensus 738 ~~~~ 741 (793)
T PLN00181 738 AFPM 741 (793)
T ss_pred CCCC
Confidence 7554
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.2e-25 Score=235.17 Aligned_cols=279 Identities=16% Similarity=0.267 Sum_probs=222.9
Q ss_pred ccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCC
Q 000703 396 TLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRN 475 (1342)
Q Consensus 396 ~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~ 475 (1342)
.|+++|+.|+++|.||-|.+|+..+++..+-++ |. ++ |+
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk---------------YQ-------Aq---------d~---------- 258 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK---------------YQ-------AQ---------DN---------- 258 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhh---------------hh-------hh---------cc----------
Confidence 345568899999999999999999887533110 00 00 00
Q ss_pred CCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEe
Q 000703 476 RPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF 555 (1342)
Q Consensus 476 ~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l 555 (1342)
| --+..+|.|+.|+- +...+|+|+.||.|+||.+.||.|++.|
T Consensus 259 ---------------f------MMmd~aVlci~FSR----------------DsEMlAsGsqDGkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 259 ---------------F------MMMDDAVLCISFSR----------------DSEMLASGSQDGKIKVWRIETGQCLRRF 301 (508)
T ss_pred ---------------e------eecccceEEEeecc----------------cHHHhhccCcCCcEEEEEEecchHHHHh
Confidence 0 01467899999987 5789999999999999999999999999
Q ss_pred e-ecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEEC
Q 000703 556 S-VHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR 633 (1342)
Q Consensus 556 ~-gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~ 633 (1342)
. .|+..|+++.|+.|+ .++|.++| .++++--+.+|+ +++.++| |.+.|+...|++||.++++++.
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD----------~tvRiHGlKSGK--~LKEfrG-HsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFD----------QTVRIHGLKSGK--CLKEFRG-HSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hhhhccCeeEEEEccCcchhhccccc----------ceEEEeccccch--hHHHhcC-ccccccceEEcCCCCeEEEecC
Confidence 7 999999999999887 67776655 489999999998 6777777 9999999999999999999999
Q ss_pred CCCEEEEeccCCcceeeeccC-----ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCC
Q 000703 634 DAPVEVWAMTKNPIMLRSLAL-----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDAS 708 (1342)
Q Consensus 634 D~tIkvWDl~kt~~~l~~l~~-----~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 708 (1342)
|++|+||+. ++..|+.+++. ++.++-.-|
T Consensus 369 DgtvkvW~~-KtteC~~Tfk~~~~d~~vnsv~~~P--------------------------------------------- 402 (508)
T KOG0275|consen 369 DGTVKVWHG-KTTECLSTFKPLGTDYPVNSVILLP--------------------------------------------- 402 (508)
T ss_pred CccEEEecC-cchhhhhhccCCCCcccceeEEEcC---------------------------------------------
Confidence 999999999 89999988762 122211111
Q ss_pred CCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCC-CCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-
Q 000703 709 SEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRP-KWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH- 786 (1342)
Q Consensus 709 s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~-~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~- 786 (1342)
...++++++...++|++-++.|+.++.+.. +.. +.+-...+++..|.++.+.+.|+.++++.+.+|+
T Consensus 403 ------Knpeh~iVCNrsntv~imn~qGQvVrsfsSGkRE-----gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 403 ------KNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKRE-----GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred ------CCCceEEEEcCCCeEEEEeccceEEeeeccCCcc-----CCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 124789999999999999999988876421 111 2233345567799999999999999999999998
Q ss_pred eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEE
Q 000703 787 SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1342)
Q Consensus 787 ~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD 828 (1342)
.++++.|..-|..++-+|.. ..||+-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHq------NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQ------NLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCccc------chhhhhcccchhhhcC
Confidence 57889999999999999982 4688889999999994
No 65
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=239.77 Aligned_cols=283 Identities=15% Similarity=0.121 Sum_probs=213.8
Q ss_pred CCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEE
Q 000703 75 SPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAA 154 (1342)
Q Consensus 75 ~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas 154 (1342)
.+.|..|+|.|+ |++|++|+..|.+.||+..+-. .++-++.|.. +|.++.|++++ ..++|
T Consensus 96 kc~V~~v~WtPe--------------GRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs-~Vr~m~ws~~g---~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPE--------------GRRLLTGSQSGEFTLWNGTSFN--FETILQAHDS-PVRTMKWSHNG---TWMIS 155 (464)
T ss_pred ccceeeEEEcCC--------------CceeEeecccccEEEecCceee--HHHHhhhhcc-cceeEEEccCC---CEEEE
Confidence 457999999987 5899999999999999973311 1222477877 99999999988 89999
Q ss_pred EeCCCeEEEEECCCCeEEEEEeCCC-CceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhh
Q 000703 155 INGPSVLSLYNTTSASCMWKYDASP-EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLK 233 (1342)
Q Consensus 155 ~s~d~~i~lWd~~tg~~i~~~~~~~-~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~ 233 (1342)
++.++.|++|+..-.. +.....|+ +.|++++|+| ...+|++++.||+|++||+.-..+...
T Consensus 156 gD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~v---------------- 217 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERV---------------- 217 (464)
T ss_pred cCCCceEEecccchhh-hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhhe----------------
Confidence 9999999999985332 33334444 8999999999 789999999999999999754221110
Q ss_pred hhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEE
Q 000703 234 LERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLY 313 (1342)
Q Consensus 234 l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~ 313 (1342)
|. ++.-.+.++.++|....+++++-|+.|.+||.++|+++.++ +.+...+..+.|.|++.+|+
T Consensus 218 L~---------------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~Ll 280 (464)
T KOG0284|consen 218 LR---------------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWLL 280 (464)
T ss_pred ec---------------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCeeE
Confidence 11 12224677899999999999999999999999999999765 45567788999999999999
Q ss_pred EEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCccc
Q 000703 314 CAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFS 393 (1342)
Q Consensus 314 s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~ 393 (1342)
++|.|.++++.|.++-+.+.++.+ ..|...+ ..
T Consensus 281 t~skD~~~kv~DiR~mkEl~~~r~-------------------------------Hkkdv~~----------------~~ 313 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTMKELFTYRG-------------------------------HKKDVTS----------------LT 313 (464)
T ss_pred EccCCceEEEEehhHhHHHHHhhc-------------------------------chhhhee----------------ec
Confidence 999999999999884332222211 1111111 22
Q ss_pred ccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCC
Q 000703 394 DDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGS 473 (1342)
Q Consensus 394 ~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~ 473 (1342)
+.|+.++ .|.+++.||.|..|.+.....+ +..
T Consensus 314 WhP~~~~--lftsgg~Dgsvvh~~v~~~~p~---------------------~~i------------------------- 345 (464)
T KOG0284|consen 314 WHPLNES--LFTSGGSDGSVVHWVVGLEEPL---------------------GEI------------------------- 345 (464)
T ss_pred ccccccc--ceeeccCCCceEEEeccccccc---------------------cCC-------------------------
Confidence 3455554 9999999999999998622110 000
Q ss_pred CCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000703 474 RNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDV 546 (1342)
Q Consensus 474 ~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl 546 (1342)
-.+|...|++++++| -|.+||+|+.|.++++|.-
T Consensus 346 -----------------------~~AHd~~iwsl~~hP----------------lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 -----------------------PPAHDGEIWSLAYHP----------------LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred -----------------------Ccccccceeeeeccc----------------cceeEeecCCCcceeeecc
Confidence 023678899999998 5899999999999999974
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9e-23 Score=212.55 Aligned_cols=279 Identities=15% Similarity=0.164 Sum_probs=209.4
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC-cEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~-~llS 575 (1342)
|..+.++|.+++|.- +|++..+++.|.+||+||...|.+++++.+|-..|..++.+.|+ +|.+
T Consensus 13 l~~~qgaV~avryN~----------------dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNV----------------DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred ecccccceEEEEEcc----------------CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccccc
Confidence 456788999999876 69999999999999999999999999999999999999987766 6665
Q ss_pred EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc--ceeeecc
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP--IMLRSLA 653 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~--~~l~~l~ 653 (1342)
++.| .-+++||++||+ .+|.+++ |.+.|+.++|+.+...+++|+.|.++++||. ++. +.++.+.
T Consensus 77 ~GgD----------k~v~vwDV~TGk--v~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDC-RS~s~ePiQild 142 (307)
T KOG0316|consen 77 CGGD----------KAVQVWDVNTGK--VDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDC-RSRSFEPIQILD 142 (307)
T ss_pred CCCC----------ceEEEEEcccCe--eeeeccc-ccceeeEEEecCcceEEEeccccceeEEEEc-ccCCCCccchhh
Confidence 5444 489999999999 7888877 8999999999999999999999999999998 543 2222221
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEE
Q 000703 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1342)
Q Consensus 654 ~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwd 733 (1342)
-..+ |... ..-....++.++.||+++.||
T Consensus 143 -------ea~D---------------------------~V~S-----------------i~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 143 -------EAKD---------------------------GVSS-----------------IDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred -------hhcC---------------------------ceeE-----------------EEecccEEEeeccCCcEEEEE
Confidence 1111 1000 011123467899999999999
Q ss_pred ec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCC
Q 000703 734 VH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 734 v~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
++ |+...|+ .+| .|++++| ||+.+..++.|++|++-|-.+|+ +..+.||+..=.++...-....
T Consensus 172 iR~G~l~sDy---------~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd- 239 (307)
T KOG0316|consen 172 IRKGTLSSDY---------FGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD- 239 (307)
T ss_pred eecceeehhh---------cCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-
Confidence 95 4433442 133 4888888 99999999999999999999998 5778999987777654433111
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEc
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi 881 (1342)
..+++++.||.|.+||+.....+ ..+ .-+. ...|.+++++|. -..+ .+| .++.+..|.-
T Consensus 240 ---thV~sgSEDG~Vy~wdLvd~~~~-sk~-~~~~-~v~v~dl~~hp~----~~~f--~~A-~~~~~~~~~~ 298 (307)
T KOG0316|consen 240 ---THVFSGSEDGKVYFWDLVDETQI-SKL-SVVS-TVIVTDLSCHPT----MDDF--ITA-TGHGDLFWYQ 298 (307)
T ss_pred ---eeEEeccCCceEEEEEeccceee-eee-ccCC-ceeEEeeecccC----ccce--eEe-cCCceeceee
Confidence 57899999999999999887633 333 2222 234899999996 2222 333 3555667753
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=6.5e-23 Score=250.92 Aligned_cols=237 Identities=21% Similarity=0.271 Sum_probs=196.6
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~ 576 (1342)
+.||.+.|+++++.- .+.++++|+.|.+++|||..+|.+...|.||++.|+++..-+. .+++
T Consensus 245 l~GH~g~V~~l~~~~----------------~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~s- 306 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS----------------GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVS- 306 (537)
T ss_pred ccCCCCCceeEEEec----------------CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEee-
Confidence 457899999999874 3679999999999999999999999999999999999876442 2333
Q ss_pred ecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc-
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP- 655 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~- 655 (1342)
|+.|++|++|++.+|. .++.+.+ |..+|+++.++ +.++++|+.|++|+|||+ .++++++++.++
T Consensus 307 ---------gs~D~tVkVW~v~n~~--~l~l~~~-h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~-~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 307 ---------GSRDNTVKVWDVTNGA--CLNLLRG-HTGPVNCVQLD--EPLLVSGSYDGTVKVWDP-RTGKCLKSLSGHT 371 (537)
T ss_pred ---------ccCCceEEEEeccCcc--eEEEecc-ccccEEEEEec--CCEEEEEecCceEEEEEh-hhceeeeeecCCc
Confidence 4456799999999988 6777777 99999999998 899999999999999999 699999988753
Q ss_pred --eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEE
Q 000703 656 --FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1342)
Q Consensus 656 --vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwd 733 (1342)
|+++.+. . .+.+.+++.|++|++||
T Consensus 372 ~~V~sl~~~----------------------------------------------------~-~~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 372 GRVYSLIVD----------------------------------------------------S-ENRLLSGSLDTTIKVWD 398 (537)
T ss_pred ceEEEEEec----------------------------------------------------C-cceEEeeeeccceEeec
Confidence 3343221 0 15678999999999999
Q ss_pred ecCC-eeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeecc-ccccEEEEEEecCCCCCC
Q 000703 734 VHGR-RIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFST-HREGIRRIKFSPVVPGDR 810 (1342)
Q Consensus 734 v~g~-~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~-H~~~V~~v~fSPd~~g~~ 810 (1342)
+++. +... .+.+|...+..+.+.+++|++++.||+|++||..+++ .+++.+ |.+.|..+.+. +
T Consensus 399 l~~~~~c~~--------tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~----- 464 (537)
T KOG0274|consen 399 LRTKRKCIH--------TLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-K----- 464 (537)
T ss_pred CCchhhhhh--------hhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-c-----
Confidence 9765 3322 1336778888889999999999999999999999988 567777 78999999886 2
Q ss_pred CCCEEEEEECCCeEEEEECCCCCcc
Q 000703 811 SRGRIAVLFHDNTFSVFDLDSQDPL 835 (1342)
Q Consensus 811 ~~~~Las~s~DgtI~IWDl~t~~~l 835 (1342)
..+++++.|+++++||+.++...
T Consensus 465 --~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 465 --EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred --ceEEEEecCCeeEEEecccCchh
Confidence 35888999999999999999844
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=248.92 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=210.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEE-eeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEE
Q 000703 530 PLVALGTQSGAVDVVDVSANAVTAS-FSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1342)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~-l~gH~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1342)
..+.+|+.|++|++||..++..+.. +.||.+.|.++++.. +..+++++.| .+++|||..+|. +..+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D----------~t~rvWd~~sg~--C~~~ 286 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD----------KTERVWDCSTGE--CTHS 286 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecC----------CcEEeEecCCCc--EEEE
Confidence 5788999999999999999998887 999999999999975 4567766555 499999999999 6777
Q ss_pred eccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 608 l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
+.+ |...|.++..- +.++++|++|.+|++|++ .++.+++.+.. +|.++...
T Consensus 287 l~g-h~stv~~~~~~--~~~~~sgs~D~tVkVW~v-~n~~~l~l~~~h~~~V~~v~~~---------------------- 340 (537)
T KOG0274|consen 287 LQG-HTSSVRCLTID--PFLLVSGSRDNTVKVWDV-TNGACLNLLRGHTGPVNCVQLD---------------------- 340 (537)
T ss_pred ecC-CCceEEEEEcc--CceEeeccCCceEEEEec-cCcceEEEeccccccEEEEEec----------------------
Confidence 777 88888877765 457888999999999999 68999887763 23333221
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecC-CeeeccCCCCCCCccccccceEEEEee
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY 763 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g-~~v~d~~~~~~~~~~~~~~~~V~~va~ 763 (1342)
...+++++.||+|++|++.. +.++. +.+|.+.|.++.+
T Consensus 341 --------------------------------~~~lvsgs~d~~v~VW~~~~~~cl~s---------l~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 341 --------------------------------EPLLVSGSYDGTVKVWDPRTGKCLKS---------LSGHTGRVYSLIV 379 (537)
T ss_pred --------------------------------CCEEEEEecCceEEEEEhhhceeeee---------ecCCcceEEEEEe
Confidence 35688999999999999963 33332 4479999999999
Q ss_pred cC-CEEEEEeCCCcEEEEECCCC-c-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccc
Q 000703 764 RL-PHVVMGDRSGNIRWWDVTTG-H-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLL 840 (1342)
Q Consensus 764 dg-~~LasGs~DgtI~lWDl~tg-~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~ 840 (1342)
++ ..+++|+.|++|++||+.++ + +.++.+|.+-|..+.+.. ++|++++.|++|++||..+++++ .++.
T Consensus 380 ~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--------~~Lvs~~aD~~Ik~WD~~~~~~~-~~~~ 450 (537)
T KOG0274|consen 380 DSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--------NFLVSSSADGTIKLWDAEEGECL-RTLE 450 (537)
T ss_pred cCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc--------ceeEeccccccEEEeecccCcee-eeec
Confidence 98 99999999999999999998 6 678999999998887643 47999999999999999999854 4552
Q ss_pred CCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCccc
Q 000703 841 QPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSEKK 887 (1342)
Q Consensus 841 ~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~~~ 887 (1342)
.+|. ..|..+.+.. . .+++++.||++++||++.++..
T Consensus 451 ~~~~--~~v~~l~~~~-------~-~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GRHV--GGVSALALGK-------E-EILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cCCc--ccEEEeecCc-------c-eEEEEecCCeeEEEecccCchh
Confidence 2232 5688877752 2 4678999999999999966543
No 69
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=5.3e-20 Score=213.07 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=118.8
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 26 NFGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
.++.++|-||| -|..++++.+.|+|+..|..+++|++|++ .|.+|+||.| |.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKD-----------tVycVAys~d--------------GkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-----------TVYCVAYAKD--------------GKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccc-----------eEEEEEEccC--------------Ccee
Confidence 57889999999 66777889999999999999999999999 9999999986 5899
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSC 184 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~ 184 (1342)
|||+.|..|+||.-.--..+ . -.|.. .|+++.|.|-. ..|++++- +..-+|.+... .+.++.. ...+.+
T Consensus 69 ASG~aDK~VI~W~~klEG~L-k---YSH~D-~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK-~V~K~ks-s~R~~~ 137 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL-K---YSHND-AIQCMSFNPIT---HQLASCSL-SDFGLWSPEQK-SVSKHKS-SSRIIC 137 (1081)
T ss_pred ccCCCceeEEEeccccccee-e---eccCC-eeeEeecCchH---HHhhhcch-hhccccChhhh-hHHhhhh-heeEEE
Confidence 99999999999996432222 2 25777 99999999986 88999874 45668987533 2333332 457789
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEE
Q 000703 185 IRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 185 v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
++|.- |+..++.|-.+|+|.+-+
T Consensus 138 CsWtn-DGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 138 CSWTN-DGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeecC-CCcEEEEeccCceEEeec
Confidence 99998 999999999999998853
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=5e-22 Score=219.49 Aligned_cols=242 Identities=12% Similarity=0.180 Sum_probs=185.7
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEE----EEeeecCCCeEEEEEcCCC-c
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVT----ASFSVHNGTVRGLRWLGNS-R 572 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~----~~l~gH~~~V~~l~fs~d~-~ 572 (1342)
.||++++.++++.-+ | ....++++|++|.++++|-...+... +.-.||...|-+|...++| +
T Consensus 141 ~Ght~~ik~v~~v~~-----------n--~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIK-----------N--SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR 207 (423)
T ss_pred ecCCcceeeeEEEec-----------C--CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe
Confidence 457888887766431 1 23458999999999999998877532 2234999999999988877 6
Q ss_pred EEEEecCCcccccCcccCEEEEEEcCCC-----------------------ceeeeEEeccCCCCCeEEEEEcCCCCEEE
Q 000703 573 LVSFSYSQVNEKSGGYINRLVVTCLRSG-----------------------INRAFRVLQKPERAPIRALRASSSGRYLL 629 (1342)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG-----------------------~~~~l~~l~g~h~~~I~~i~~Spdg~~La 629 (1342)
++|+ .+|++|.+|+.++. .-.++..+.| |..+|.+|.|++ ...+.
T Consensus 208 ~~Sg----------S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 208 FCSG----------SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred EEee----------cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEEcC-CCceE
Confidence 6654 45669999993211 1124555666 999999999998 67889
Q ss_pred EEECCCCEEEEeccCCcceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCC
Q 000703 630 ILFRDAPVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDA 707 (1342)
Q Consensus 630 s~s~D~tIkvWDl~kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 707 (1342)
+++.|.+|+.||+ .++.++.++. ..+++++.+|
T Consensus 276 S~SwDHTIk~WDl-etg~~~~~~~~~ksl~~i~~~~-------------------------------------------- 310 (423)
T KOG0313|consen 276 SVSWDHTIKVWDL-ETGGLKSTLTTNKSLNCISYSP-------------------------------------------- 310 (423)
T ss_pred eecccceEEEEEe-ecccceeeeecCcceeEeeccc--------------------------------------------
Confidence 9999999999999 6887776554 2345555442
Q ss_pred CCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCC
Q 000703 708 SSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTT 784 (1342)
Q Consensus 708 ~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~DgtI~lWDl~t 784 (1342)
...++|+++.|..+++||.+.+.- ..+...|.||.++|.++.| +-.+|++|+.||++++||+++
T Consensus 311 --------~~~Ll~~gssdr~irl~DPR~~~g-----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 311 --------LSKLLASGSSDRHIRLWDPRTGDG-----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred --------ccceeeecCCCCceeecCCCCCCC-----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 235789999999999999843210 1112246799999999999 667899999999999999998
Q ss_pred Cc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEEC
Q 000703 785 GH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1342)
Q Consensus 785 g~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl 829 (1342)
-+ +..+.+|...|.++.|.-. ..|++||.|++|+|+.-
T Consensus 378 ~k~plydI~~h~DKvl~vdW~~~-------~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWNEG-------GLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCcceeeccCCceEEEEeccCC-------ceEEeccCcceEEEecc
Confidence 55 6789999999999999865 57999999999999864
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.4e-22 Score=205.37 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=200.1
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000703 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1342)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~ 135 (1342)
.+.+|..|.+ .|.+|+|.-| |.+..+++.|.+|++|+...|.+++++ .||..
T Consensus 9 r~~~l~~~qg-----------aV~avryN~d--------------GnY~ltcGsdrtvrLWNp~rg~liktY--sghG~- 60 (307)
T KOG0316|consen 9 RLSILDCAQG-----------AVRAVRYNVD--------------GNYCLTCGSDRTVRLWNPLRGALIKTY--SGHGH- 60 (307)
T ss_pred hceeeccccc-----------ceEEEEEccC--------------CCEEEEcCCCceEEeecccccceeeee--cCCCc-
Confidence 4667889998 9999999876 688999999999999999999999995 67766
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~ 215 (1342)
.|.+++-+.|. ..++++++|..+.+||+.||+.+.++.+|...|+.++|+- ++..+++++.|..+++||.+.....
T Consensus 61 EVlD~~~s~Dn---skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 61 EVLDAALSSDN---SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred eeeeccccccc---cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC
Confidence 89999988876 6789999999999999999999999999999999999998 8999999999999999998764332
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCC
Q 000703 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1342)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1342)
.+ +| +.. ....|.++..+ +..|+.++.||+++.||+..|+.....-
T Consensus 137 Pi-----Qi---------lde---------------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--- 182 (307)
T KOG0316|consen 137 PI-----QI---------LDE---------------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--- 182 (307)
T ss_pred cc-----ch---------hhh---------------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---
Confidence 21 11 110 11125555554 3478889999999999999998765432
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCC
Q 000703 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1342)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~ 375 (1342)
..|+.++.+++||..+..++.|++|||-|..+|+.+..+.++.. .
T Consensus 183 -g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-------------~--------------------- 227 (307)
T KOG0316|consen 183 -GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-------------M--------------------- 227 (307)
T ss_pred -CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-------------c---------------------
Confidence 25788999999999999999999999999999986554422100 0
Q ss_pred CCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccc
Q 000703 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEG 422 (1342)
Q Consensus 376 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~ 422 (1342)
.|. .+|.++...++++++|+||.|.+||+..+.
T Consensus 228 -------------eyk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 228 -------------EYK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred -------------eee-eeeeecccceeEEeccCCceEEEEEeccce
Confidence 011 123344446799999999999999997654
No 72
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-18 Score=202.14 Aligned_cols=524 Identities=15% Similarity=0.113 Sum_probs=330.8
Q ss_pred CCCceEeCCCC-eEEEE-cCCeEEEEeCCCcc-eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 26 NFGSADLSPSG-LLAFA-SGSSISILDSRSLQ-LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~-~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
.+.|+++|.+. -||.+ .++.|.||+++..= +..++.||+.+ .|.+++|++ +.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~dr----------sIE~L~W~e---------------~~ 81 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDR----------SIESLAWAE---------------GG 81 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCC----------ceeeEEEcc---------------CC
Confidence 36788888764 67766 67899999998753 35678888873 799999995 46
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCC--CC
Q 000703 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS--PE 180 (1342)
Q Consensus 103 ~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~--~~ 180 (1342)
+|-|.+.+|.|.-||+.+++.+..++ ...+ +|.+++-.|.+ ..|+.+..||.+...+...+....+.... ..
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg-~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQKYNID--SNGG-AIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred eEEeecCCceEEEEecccCceeEEec--CCCc-ceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 89999999999999999999888753 3334 99999999987 78888889998888888777766655443 35
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
.+.+++|+| ++.+++.|+.||.|++||+..... ..+-+ -.+.++.+ ..+.-+.++.
T Consensus 156 RvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t-------~~~~~--~~~d~l~k--------------~~~~iVWSv~ 211 (691)
T KOG2048|consen 156 RVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT-------LHIIT--MQLDRLSK--------------REPTIVWSVL 211 (691)
T ss_pred eEEEEEecC-CccEEEecccCceEEEEEcCCCce-------EEEee--eccccccc--------------CCceEEEEEE
Confidence 889999999 999999999999999999754211 11100 00112211 1233477888
Q ss_pred EccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 000703 261 FSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEE 340 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1342)
|-.|+ +|+++-.-|+|.+||.+.++.+..+..+ .+.+..++..+++++|++++.|++|......++...+...+..
T Consensus 212 ~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r- 287 (691)
T KOG2048|consen 212 FLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR- 287 (691)
T ss_pred EeecC-cEEEecCCceEEEEcccCcchhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc-
Confidence 98875 7888889999999999999998766554 3667788888999999999999999888766543212210000
Q ss_pred ccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccc
Q 000703 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1342)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~ 420 (1342)
..+++ .|-.++. - +..+++++.|+++.+=-...
T Consensus 288 --~~h~h-----dvrs~av--------------------------------------~--~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 288 --DLHAH-----DVRSMAV--------------------------------------I--ENALISGGRDFTLAICSSRE 320 (691)
T ss_pred --cCCcc-----cceeeee--------------------------------------e--cceEEecceeeEEEEccccc
Confidence 00000 1111111 1 23788888888876532211
Q ss_pred ccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeecccc
Q 000703 421 EGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQIL 500 (1342)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~ 500 (1342)
-+ . ++ .....+| + +
T Consensus 321 ~~--~--~~--------h~~~~~~--------------------------------------------p----------~ 334 (691)
T KOG2048|consen 321 FK--N--MD--------HRQKNLF--------------------------------------------P----------A 334 (691)
T ss_pred cC--c--hh--------hhccccc--------------------------------------------c----------c
Confidence 00 0 00 0000000 0 0
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc---------EEEEeeecCCCeEEEEEcCCC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA---------VTASFSVHNGTVRGLRWLGNS 571 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~---------~~~~l~gH~~~V~~l~fs~d~ 571 (1342)
+ .+ +.+.| .+.|..-=....+.+|.+.+.. +.+....-...|.+-+.+|+|
T Consensus 335 ~-~~--v~~a~-----------------~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg 394 (691)
T KOG2048|consen 335 S-DR--VSVAP-----------------ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDG 394 (691)
T ss_pred c-ce--eecCc-----------------cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCC
Confidence 0 00 11222 1222222334556677765441 222222233578888899999
Q ss_pred cEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEecc--CCCCCeEEEEEcCCCCEEEEEE-CCCCEEEEeccCCcce
Q 000703 572 RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQK--PERAPIRALRASSSGRYLLILF-RDAPVEVWAMTKNPIM 648 (1342)
Q Consensus 572 ~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g--~h~~~I~~i~~Spdg~~Las~s-~D~tIkvWDl~kt~~~ 648 (1342)
.+++.+.-. +.+|+-+........+.... ....+...+.|+-|++.++.++ .+..+++.++ .+++.
T Consensus 395 ~~Ia~st~~----------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el-~~ps~ 463 (691)
T KOG2048|consen 395 NLIAISTVS----------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFEL-ETPSF 463 (691)
T ss_pred CEEEEeecc----------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEe-cCcch
Confidence 999877532 55666654311111111111 0223567788999998888888 6677888877 44432
Q ss_pred eeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCC
Q 000703 649 LRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1342)
Q Consensus 649 l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dgt 728 (1342)
....+ ..|. ..+ . .++ -....++++.+|+.+..|.
T Consensus 464 kel~~-------~~~~--~~~--~----~I~------------------------------~l~~SsdG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 464 KELKS-------IQSQ--AKC--P----SIS------------------------------RLVVSSDGNYIAAISTRGQ 498 (691)
T ss_pred hhhhc-------cccc--cCC--C----cce------------------------------eEEEcCCCCEEEEEeccce
Confidence 21111 1111 000 0 000 0011256789999999999
Q ss_pred EEEEEecCCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCcee------------eeccc
Q 000703 729 LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGHSS------------QFSTH 793 (1342)
Q Consensus 729 I~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~DgtI~lWDl~tg~~~------------~l~~H 793 (1342)
|.+|++++.+.+.+..+.+ ..|+++++ +-..||.+..|+.+.=+|++.+++. .+..-
T Consensus 499 I~v~nl~~~~~~~l~~rln--------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l 570 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLN--------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTL 570 (691)
T ss_pred EEEEEcccceeecchhccC--------cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhc
Confidence 9999998877654332222 24677766 6678999999999999999543321 12344
Q ss_pred cccEEEEEEecC
Q 000703 794 REGIRRIKFSPV 805 (1342)
Q Consensus 794 ~~~V~~v~fSPd 805 (1342)
...|..+.|+|-
T Consensus 571 ~~~~~gisfd~~ 582 (691)
T KOG2048|consen 571 IPGIPGISFDPK 582 (691)
T ss_pred CCCCceEEeCCC
Confidence 567888888876
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=1.5e-22 Score=212.35 Aligned_cols=295 Identities=12% Similarity=0.096 Sum_probs=229.9
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~ 134 (1342)
|.-.+..||+. +|.-++|||- .|+|-+|+|++.||.=.+-+-.+|..+.+| .||.+
T Consensus 5 ~~pl~c~ghtr-----------pvvdl~~s~i-----------tp~g~flisa~kd~~pmlr~g~tgdwigtf--eghkg 60 (334)
T KOG0278|consen 5 QTPLTCHGHTR-----------PVVDLAFSPI-----------TPDGYFLISASKDGKPMLRNGDTGDWIGTF--EGHKG 60 (334)
T ss_pred cCceEEcCCCc-----------ceeEEeccCC-----------CCCceEEEEeccCCCchhccCCCCCcEEee--eccCc
Confidence 33456789998 8999999985 489999999999999999999999999996 68888
Q ss_pred CCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC-Cc
Q 000703 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG-QK 213 (1342)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~-~~ 213 (1342)
.|...+...+. ...|+++.|-+.++||+.||..+..+.. ...|..++|+. |...|.+++.+-.++++|+.- +.
T Consensus 61 -avw~~~l~~na---~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~-ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 61 -AVWSATLNKNA---TRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred -ceeeeecCchh---hhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecc-cchhhhccchHHHhhhhhccCCCC
Confidence 88887766554 6778889999999999999998877764 67889999999 999999999999999987633 11
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEec
Q 000703 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l 293 (1342)
+ .++ -.+++..|..+-|....+.+++.++|++|++||..+++.+.++..
T Consensus 135 p----p~E---------------------------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 135 P----PKE---------------------------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred C----chh---------------------------hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 0 111 123455677888988889999999999999999999999988876
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhc
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~ 373 (1342)
. .++.++-.++||++|..+. -++|+.||.++-..+..+ .||- .|.+..+.|
T Consensus 184 ~---s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~-----k~P~--------nV~SASL~P------------ 234 (334)
T KOG0278|consen 184 N---SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY-----KMPC--------NVESASLHP------------ 234 (334)
T ss_pred C---CCCcceeeccCCCEEEEec-CceeEEeccccccceeec-----cCcc--------ccccccccC------------
Confidence 5 5566777789999776654 468999999865533322 1220 222222222
Q ss_pred CCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCc
Q 000703 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1342)
Q Consensus 374 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~ 453 (1342)
+...++.+++|+.+..+|..++..+..
T Consensus 235 --------------------------~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------- 261 (334)
T KOG0278|consen 235 --------------------------KKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------- 261 (334)
T ss_pred --------------------------CCceEEecCcceEEEEEeccCCceeee---------------------------
Confidence 245888999999999999987642110
Q ss_pred CcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000703 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1342)
Q Consensus 454 ~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llA 533 (1342)
...||.++|.||+|+| +|.+.|
T Consensus 262 ------------------------------------------~nkgh~gpVhcVrFSP----------------dGE~yA 283 (334)
T KOG0278|consen 262 ------------------------------------------YNKGHFGPVHCVRFSP----------------DGELYA 283 (334)
T ss_pred ------------------------------------------cccCCCCceEEEEECC----------------CCceee
Confidence 0135889999999999 699999
Q ss_pred EEeCCCcEEEEeCCCCc
Q 000703 534 LGTQSGAVDVVDVSANA 550 (1342)
Q Consensus 534 sGs~DGtI~lWDl~tg~ 550 (1342)
+|++||+||||-...++
T Consensus 284 sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCceEEEEEecCCC
Confidence 99999999999986554
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.8e-23 Score=225.34 Aligned_cols=282 Identities=13% Similarity=0.214 Sum_probs=211.7
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCc
Q 000703 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR 572 (1342)
Q Consensus 493 l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~ 572 (1342)
..|+|.||...|.+++-+|. .-..+|+|+.||.|+|||+++..+.++|..|.+.|++|.+.. +.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~---------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~ 121 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPN---------------KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TS 121 (433)
T ss_pred chhhccccccccchhhcCcc---------------hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cc
Confidence 46788999999999999882 235789999999999999999999999999999999999987 77
Q ss_pred EEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec
Q 000703 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
+++++.| .+|+.|-+.- . +++++.+ ...+..|.-+..+..+|+++.+ |.|||. .....+++|
T Consensus 122 ~~tvgdD----------KtvK~wk~~~-~--p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~-~R~~Pv~sm 183 (433)
T KOG0268|consen 122 FFTVGDD----------KTVKQWKIDG-P--PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDE-QRDNPVSSM 183 (433)
T ss_pred eEEecCC----------cceeeeeccC-C--cceeeec--cccccccccccccccccccCce--eeeccc-ccCCcccee
Confidence 8877665 4899998753 2 5555544 3566777777778888888765 899998 444444443
Q ss_pred c---CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCE
Q 000703 653 A---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1342)
Q Consensus 653 ~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI 729 (1342)
. ..+.++.|+|- ....|+++..|++|
T Consensus 184 swG~Dti~svkfNpv---------------------------------------------------ETsILas~~sDrsI 212 (433)
T KOG0268|consen 184 SWGADSISSVKFNPV---------------------------------------------------ETSILASCASDRSI 212 (433)
T ss_pred ecCCCceeEEecCCC---------------------------------------------------cchheeeeccCCce
Confidence 3 11233333321 12357888899999
Q ss_pred EEEEecCCe-eeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEec
Q 000703 730 GVFEVHGRR-IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSP 804 (1342)
Q Consensus 730 ~lwdv~g~~-v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSP 804 (1342)
.+||..... ++.+... -.-+.|+| .+-.+++|+.|.+++.+|++.-. +....+|...|.+|.|||
T Consensus 213 vLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred EEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 999995443 2211000 12356778 56679999999999999998643 566789999999999999
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECCCCCc--ccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 805 VVPGDRSRGRIAVLFHDNTFSVFDLDSQDP--LANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 805 d~~g~~~~~~Las~s~DgtI~IWDl~t~~~--l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
. | +.++++|.|++||||.++.+.. +..+. ....|++|.|+.| .+ +++|||+|+.||+|...
T Consensus 283 t--G----~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~D----sk--yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 283 T--G----QEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMD----SK--YIISGSDDGNVRLWKAK 345 (433)
T ss_pred C--c----chhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEecc----cc--EEEecCCCcceeeeecc
Confidence 9 6 7899999999999999876541 22222 1356999999998 34 68999999999999977
Q ss_pred CCcc
Q 000703 883 TSEK 886 (1342)
Q Consensus 883 ~~~~ 886 (1342)
..++
T Consensus 346 Asek 349 (433)
T KOG0268|consen 346 ASEK 349 (433)
T ss_pred hhhh
Confidence 5444
No 75
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=1.3e-20 Score=230.41 Aligned_cols=214 Identities=13% Similarity=0.159 Sum_probs=164.6
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-------EEEEecCCC
Q 000703 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS-------VVLWIDPDP 131 (1342)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~-------~~~~l~~~~ 131 (1342)
.|.+|.+ .|++|+|+|. ++.+||||+.||+|+|||+.++. .+.. +.+
T Consensus 70 ~l~GH~~-----------~V~~v~fsP~-------------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~--L~g 123 (493)
T PTZ00421 70 ILLGQEG-----------PIIDVAFNPF-------------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH--LQG 123 (493)
T ss_pred eEeCCCC-----------CEEEEEEcCC-------------CCCEEEEEeCCCEEEEEecCCCccccccCcceEE--ecC
Confidence 4778998 9999999983 25789999999999999997653 3344 478
Q ss_pred CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
|.+ .|.+++|+|++ ..+|++++.|++|+|||+.+++.+..+..|.+.|.+++|+| |++.|++++.||.|++||+..
T Consensus 124 H~~-~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 124 HTK-KVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCC-cEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC
Confidence 988 99999999975 26999999999999999999999888888889999999999 999999999999999999754
Q ss_pred CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE----cCCeEEEEEccCCc-
Q 000703 212 QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT----FPRELVVFDLQYET- 286 (1342)
Q Consensus 212 ~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~----~d~~I~iwDl~t~~- 286 (1342)
... ...+ ..+ .......+.|+|++..+++++ .|++|+|||+....
T Consensus 200 g~~----v~tl------------~~H--------------~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 200 GTI----VSSV------------EAH--------------ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CcE----EEEE------------ecC--------------CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 211 1111 000 001133567899988888776 37899999998653
Q ss_pred eeEEEecCCCccceEEEEEcCCCCEEEEEe-CCCcEEEEEccCCceee
Q 000703 287 PLFSAALPRGCAKFLDVLADPNNDLLYCAH-LDGKLSIWRRKEGEQVH 333 (1342)
Q Consensus 287 ~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~-~DgtI~lW~~~~g~~~~ 333 (1342)
.+....++ .........+++|+.+|++++ .||+|++|++..++...
T Consensus 250 p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 250 PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 34333322 223344456789999999887 59999999998876433
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.9e-21 Score=206.29 Aligned_cols=239 Identities=16% Similarity=0.262 Sum_probs=188.2
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC---cE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS---RL 573 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~---~l 573 (1342)
.+.|.+++++||++ ++++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++- .+
T Consensus 39 ~~aH~~sitavAVs------------------~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 39 FSAHAGSITALAVS------------------GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred ccccccceeEEEec------------------ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe
Confidence 46799999999986 5799999999999999999988888999999999999998765 67
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceee--e
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR--S 651 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~--~ 651 (1342)
+|++.| +.|.+|+...-+ .+..+++ |...|+.|+++|.|++.++.+.|+.++.||+ .+|+.-. .
T Consensus 101 lS~sdD----------G~i~iw~~~~W~--~~~slK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL-V~Gr~a~v~~ 166 (362)
T KOG0294|consen 101 LSGSDD----------GHIIIWRVGSWE--LLKSLKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNL-VRGRVAFVLN 166 (362)
T ss_pred eeecCC----------CcEEEEEcCCeE--Eeeeecc-cccccceeEecCCCceEEEEcCCceeeeehh-hcCccceeec
Confidence 876554 589999986654 6777665 8888999999999999999999999999999 5665322 2
Q ss_pred ccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEE
Q 000703 652 LALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGV 731 (1342)
Q Consensus 652 l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~l 731 (1342)
++..-+.+.|+|. +++|+....+ .|-+
T Consensus 167 L~~~at~v~w~~~----------------------------------------------------Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 167 LKNKATLVSWSPQ----------------------------------------------------GDHFVVSGRN-KIDI 193 (362)
T ss_pred cCCcceeeEEcCC----------------------------------------------------CCEEEEEecc-EEEE
Confidence 2322245788743 4677776655 4778
Q ss_pred EEecCCeeeccCCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCC
Q 000703 732 FEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 732 wdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
|.++...+... - .....+.++.| ++..|++|..|++|++||..++. ...|.+|+.+|..+.+--+.-+
T Consensus 194 ~q~d~A~v~~~-i--------~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~- 263 (362)
T KOG0294|consen 194 YQLDNASVFRE-I--------ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH- 263 (362)
T ss_pred EecccHhHhhh-h--------hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-
Confidence 88865544210 0 11124678888 88999999999999999999876 5678999999999995433113
Q ss_pred CCCCEEEEEECCCeEEEEECCCCC
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
.+|++++.||.|+|||++...
T Consensus 264 ---~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 264 ---EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ---eEEEEeccCceEEEEEccccc
Confidence 579999999999999998753
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6e-22 Score=213.27 Aligned_cols=248 Identities=15% Similarity=0.240 Sum_probs=200.5
Q ss_pred CCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeE--------eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCC
Q 000703 27 FGSADLSPSG-LLAFAS-GSSISILDSRSLQLIS--------TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTE 96 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~--------~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~ 96 (1342)
+.|+.||||| .|++|+ ++-|.|||-.+|++.. .|-+|.. .|-|+.||.|.
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~-----------aVlci~FSRDs--------- 275 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDD-----------AVLCISFSRDS--------- 275 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeeccc-----------ceEEEeecccH---------
Confidence 5799999999 899987 6899999999887632 3556776 89999999874
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe
Q 000703 97 PGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD 176 (1342)
Q Consensus 97 ~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~ 176 (1342)
..||||+.||+|+||.+++|.|++.|+ ..|++ +|+++.|+.|+ ..+++++.|.+++|--+.+|+++..+.
T Consensus 276 -----EMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtk-Gvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 276 -----EMLASGSQDGKIKVWRIETGQCLRRFD-RAHTK-GVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred -----HHhhccCcCCcEEEEEEecchHHHHhh-hhhcc-CeeEEEEccCc---chhhcccccceEEEeccccchhHHHhc
Confidence 679999999999999999999999984 57999 99999999987 567789999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
+|+..|+...|.+ |+.++.+++.||+|++|+...... +.+. +|... ...+
T Consensus 346 GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC----------------~~Tf-----------k~~~~--d~~v 395 (508)
T KOG0275|consen 346 GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTEC----------------LSTF-----------KPLGT--DYPV 395 (508)
T ss_pred CccccccceEEcC-CCCeEEEecCCccEEEecCcchhh----------------hhhc-----------cCCCC--cccc
Confidence 9999999999999 999999999999999997533111 1111 11111 1123
Q ss_pred EEEEEcc-CCCceEEEEcCCeEEEEEccCCceeEEEe-cCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 257 VKFTFSP-HWRHIIFVTFPRELVVFDLQYETPLFSAA-LPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 257 ~~~aFSp-dg~~ll~~~~d~~I~iwDl~t~~~l~~~~-l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
.++-.-| +-.+++.+-..++|.|-++. |+.++.+. ..|..+.|+..+.+|-|+++||.++|+.+.-+...+|...++
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 4433334 34577777788999999987 67777664 355567899999999999999999999999999988876565
Q ss_pred E
Q 000703 335 M 335 (1342)
Q Consensus 335 ~ 335 (1342)
+
T Consensus 475 l 475 (508)
T KOG0275|consen 475 L 475 (508)
T ss_pred e
Confidence 5
No 78
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=2.6e-20 Score=228.77 Aligned_cols=230 Identities=10% Similarity=0.132 Sum_probs=175.3
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-
Q 000703 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS- 122 (1342)
Q Consensus 44 ~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~- 122 (1342)
+.|.+|+......+.+|.+|.+ .|.+|+|+|+. +.+||||+.||+|+|||+.++.
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~-----------~V~~lafsP~~-------------~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTS-----------SILDLQFNPCF-------------SEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCC-----------CEEEEEEcCCC-------------CCEEEEEeCCCeEEEEECCCCCc
Confidence 5788999888788899999998 99999999863 5789999999999999997653
Q ss_pred -------EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEE
Q 000703 123 -------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHF 195 (1342)
Q Consensus 123 -------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~l 195 (1342)
.+.. +.+|.+ .|.+++|+|++. .+|++++.|++|+|||+.+++.+..+.. ...|.+++|+| |++.|
T Consensus 110 ~~~~i~~p~~~--L~gH~~-~V~sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~V~Slswsp-dG~lL 182 (568)
T PTZ00420 110 SVKEIKDPQCI--LKGHKK-KISIIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQINM-PKKLSSLKWNI-KGNLL 182 (568)
T ss_pred cccccccceEE--eecCCC-cEEEEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEec-CCcEEEEEECC-CCCEE
Confidence 1223 367888 999999999862 5778999999999999999988777764 67899999999 99999
Q ss_pred EEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC-
Q 000703 196 CVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP- 274 (1342)
Q Consensus 196 a~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d- 274 (1342)
++++.|+.|++||+..... ...+. .|-.. ..-..+....|++|+..+++++.|
T Consensus 183 at~s~D~~IrIwD~Rsg~~----i~tl~------------gH~g~----------~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEI----ASSFH------------IHDGG----------KNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred EEEecCCEEEEEECCCCcE----EEEEe------------cccCC----------ceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 9999999999999764211 11111 11000 000012223678999999999977
Q ss_pred ---CeEEEEEccC-CceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 275 ---RELVVFDLQY-ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 275 ---~~I~iwDl~t-~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
|+|+|||+.. +..+..+.++.+.+.+.-....++|.++++|..|++||+|+...+.
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 4899999994 6677766665443433333444568899999999999999997664
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-20 Score=223.76 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=222.6
Q ss_pred CceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 28 GSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 28 ~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
+=+|||..+.+|.|.+..|.+|+..++++....+.+.. .||+|+|+++ |..||.|
T Consensus 181 nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~-----------~vtSv~ws~~--------------G~~LavG 235 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEE-----------LVTSVKWSPD--------------GSHLAVG 235 (484)
T ss_pred hHhhcccCCeEEEEecceEEEEecCCCceEEeEecCCC-----------ceEEEEECCC--------------CCEEEEe
Confidence 45899988899999999999999999997776666665 8999999987 5789999
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCC-CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE-EeCCCCceEEE
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK-YDASPEYLSCI 185 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~-~~~~~~~v~~v 185 (1342)
-.+|.|.|||+.+.+.+..+ .+ |.. .|.+++|.. ..+.+++.++.|..+|++.+..+-. +.+|.+.|-.+
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~--~~~h~~-rvg~laW~~-----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTL--RGSHAS-RVGSLAWNS-----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred ecCCeEEEEehhhccccccc--cCCcCc-eeEEEeccC-----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 99999999999888877775 45 666 899999983 6899999999999999998876555 67788899999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 186 ~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
.|++ |++++|.++.|+.+.+||.....+ .+.+ . .|...|..++|+|-.
T Consensus 308 kws~-d~~~lASGgnDN~~~Iwd~~~~~p----~~~~------------~---------------~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 308 KWSP-DGNQLASGGNDNVVFIWDGLSPEP----KFTF------------T---------------EHTAAVKALAWCPWQ 355 (484)
T ss_pred EECC-CCCeeccCCCccceEeccCCCccc----cEEE------------e---------------ccceeeeEeeeCCCc
Confidence 9999 999999999999999998633211 1111 1 122348888999998
Q ss_pred CceEEEE---cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEe--CCCcEEEEEccCCceeeeEeeccc
Q 000703 266 RHIIFVT---FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH--LDGKLSIWRRKEGEQVHVMCTMEE 340 (1342)
Q Consensus 266 ~~ll~~~---~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~--~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1342)
+.|++.+ .|+.|++||..+|+.+..+- .++.+.++++++..+-|+++| .+..|+||+..+-..+..+.++..
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 8877765 69999999999999887653 236788999999887777755 567899999877555555533222
Q ss_pred ccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccc
Q 000703 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1342)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~ 420 (1342)
+|++++.+|+ |+.+++++.|.++++|++-.
T Consensus 433 ------------RVl~la~SPd--------------------------------------g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 433 ------------RVLYLALSPD--------------------------------------GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ------------eeEEEEECCC--------------------------------------CCEEEEecccCcEEeccccC
Confidence 6788887765 66999999999999999855
Q ss_pred c
Q 000703 421 E 421 (1342)
Q Consensus 421 ~ 421 (1342)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=6.7e-21 Score=234.80 Aligned_cols=249 Identities=14% Similarity=0.252 Sum_probs=183.3
Q ss_pred eeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-------C-----------cEEEEe
Q 000703 494 DGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-------N-----------AVTASF 555 (1342)
Q Consensus 494 ~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-------g-----------~~~~~l 555 (1342)
..++..|.+.|+|++|+| +|.+||+|++|+.|.||+-.. | ++...|
T Consensus 62 l~~m~~h~~sv~CVR~S~----------------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l 125 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSP----------------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL 125 (942)
T ss_pred heeeccccCceeEEEECC----------------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE
Confidence 346777999999999998 699999999999999999862 1 156789
Q ss_pred eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCC
Q 000703 556 SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDA 635 (1342)
Q Consensus 556 ~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~ 635 (1342)
.+|++.|.+++|+|++.++. +++.||+|.|||.++.+ .++.+++ |...|.++.|.|-|+|||+-+.|+
T Consensus 126 ~~H~~DV~Dv~Wsp~~~~lv---------S~s~DnsViiwn~~tF~--~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 126 RGHDSDVLDVNWSPDDSLLV---------SVSLDNSVIIWNAKTFE--LLKVLRG-HQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ecCCCccceeccCCCccEEE---------EecccceEEEEccccce--eeeeeec-ccccccceEECCccCeeeeecCCc
Confidence 99999999999999997764 44567899999999986 6777777 889999999999999999999999
Q ss_pred CEEEEeccCCcceeeeccCc---------eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcC
Q 000703 636 PVEVWAMTKNPIMLRSLALP---------FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKD 706 (1342)
Q Consensus 636 tIkvWDl~kt~~~l~~l~~~---------vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 706 (1342)
+|+||++ -+-.+.+.+..| |..+.||||+......+
T Consensus 194 tikvwrt-~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n---------------------------------- 238 (942)
T KOG0973|consen 194 TLKVWRT-SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN---------------------------------- 238 (942)
T ss_pred eEEEEEc-ccceeeEeeccchhhCCCcceeeecccCCCcCeecchh----------------------------------
Confidence 9999997 344444444433 46788998864322100
Q ss_pred CCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-------cCC------------E
Q 000703 707 ASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-------RLP------------H 767 (1342)
Q Consensus 707 ~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-------dg~------------~ 767 (1342)
|+-..-.++.+.+-.+-++ + -.|+||.+.+.++.| ..+ .
T Consensus 239 --------------A~n~~~~~~~IieR~tWk~-~-------~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 239 --------------AVNGGKSTIAIIERGTWKV-D-------KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred --------------hccCCcceeEEEecCCcee-e-------eeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 0000111222322211111 0 125678888888887 112 6
Q ss_pred EEEEeCCCcEEEEECCCCc-eee-eccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 768 VVMGDRSGNIRWWDVTTGH-SSQ-FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 768 LasGs~DgtI~lWDl~tg~-~~~-l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
+|+|+.|++|.||.....+ +.. ..--...|..+.|+|| | -.|.++|.||+|.+..++..+
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd--G----~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD--G----FSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC--C----CeEEEEecCCeEEEEEcchHH
Confidence 8899999999999986544 111 1223578999999999 5 568899999999999997654
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=197.93 Aligned_cols=251 Identities=14% Similarity=0.165 Sum_probs=193.2
Q ss_pred EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCe
Q 000703 58 STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGI 137 (1342)
Q Consensus 58 ~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V 137 (1342)
..+.+|.. .|.+|+|.-+ |.+||+|+.|+++.||++.-++....+...+|++ .|
T Consensus 14 r~~~~~~~-----------~v~Sv~wn~~--------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-sv 67 (313)
T KOG1407|consen 14 RELQGHVQ-----------KVHSVAWNCD--------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SV 67 (313)
T ss_pred HHhhhhhh-----------cceEEEEccc--------------CceeeecccCCceEEEEecchhhhhhhcccCCCc-ch
Confidence 44678888 8999999865 6899999999999999998887777777789998 89
Q ss_pred eEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccce
Q 000703 138 QDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEV 217 (1342)
Q Consensus 138 ~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~ 217 (1342)
..++|.|..+ ++++++++|.+|++||.++++|+.......+.+. +.++| ++.++++++.|-.|.++|...
T Consensus 68 dql~w~~~~~--d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp-~g~~~~~~~kdD~it~id~r~------ 137 (313)
T KOG1407|consen 68 DQLCWDPKHP--DLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSP-DGEYIAVGNKDDRITFIDART------ 137 (313)
T ss_pred hhheeCCCCC--cceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcC-CCCEEEEecCcccEEEEEecc------
Confidence 9999999874 7899999999999999999999988776556664 78999 999999999999888887543
Q ss_pred eeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc
Q 000703 218 VVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC 297 (1342)
Q Consensus 218 ~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~ 297 (1342)
+++. . ....+-++..++|+.++........-|+|.|.....-+++..+.. |.
T Consensus 138 ----~~~~---------~-------------~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--H~ 189 (313)
T KOG1407|consen 138 ----YKIV---------N-------------EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--HP 189 (313)
T ss_pred ----ccee---------e-------------hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--CC
Confidence 2210 0 011223456678885543333333458999998887777766553 45
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCC
Q 000703 298 AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAP 377 (1342)
Q Consensus 298 ~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~ 377 (1342)
+.-.-+.++|+|+++|+|+.|..+.|||+.+-.|++.+.-++- .|-.+.|+.+
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw------------pVRTlSFS~d--------------- 242 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW------------PVRTLSFSHD--------------- 242 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC------------ceEEEEeccC---------------
Confidence 7777888999999999999999999999987666666532232 2444445433
Q ss_pred CCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccc
Q 000703 378 HSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEG 422 (1342)
Q Consensus 378 ~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~ 422 (1342)
|+.||++|+|..|-|=++++|.
T Consensus 243 -----------------------g~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 243 -----------------------GRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred -----------------------cceeeccCccceEEeEecccCC
Confidence 7799999999999887776653
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=2.9e-21 Score=202.72 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=223.5
Q ss_pred CCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEe
Q 000703 130 DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 130 ~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~ 209 (1342)
.||+. ||.+|+|+|--+++.+|.+++.|+.-.|-+-+||.=+.++.+|.+.|+....+. +..+-|+++.|-+-.+||.
T Consensus 11 ~ghtr-pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 11 HGHTR-PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDA 88 (334)
T ss_pred cCCCc-ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhh
Confidence 68999 999999999988889999999999999999999999999999999999998887 7788888888888888874
Q ss_pred cCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCce-e
Q 000703 210 LGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP-L 288 (1342)
Q Consensus 210 ~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~-l 288 (1342)
... .++..++ +.--|..|+|+.|..+|++++.++-++|||++..+. .
T Consensus 89 ~tg----------------delhsf~----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App 136 (334)
T KOG0278|consen 89 VTG----------------DELHSFE----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP 136 (334)
T ss_pred hhh----------------hhhhhhh----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc
Confidence 321 0122221 112366789999999999999999999999986544 2
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhh
Q 000703 289 FSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQN 368 (1342)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~ 368 (1342)
..+ .++.+.+..+.+|.....+.|...|++||+||.++|..++.+. . + + .|..+-++|++
T Consensus 137 ~E~--~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~---~--~-------s-~VtSlEvs~dG----- 196 (334)
T KOG0278|consen 137 KEI--SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE---F--N-------S-PVTSLEVSQDG----- 196 (334)
T ss_pred hhh--cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe---c--C-------C-CCcceeeccCC-----
Confidence 222 3456778899999988899999999999999999998777662 1 1 0 23333344432
Q ss_pred hhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcc
Q 000703 369 VAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTN 448 (1342)
Q Consensus 369 ~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~ 448 (1342)
.++++...+.|.+||.++-..++.++
T Consensus 197 ----------------------------------~ilTia~gssV~Fwdaksf~~lKs~k-------------------- 222 (334)
T KOG0278|consen 197 ----------------------------------RILTIAYGSSVKFWDAKSFGLLKSYK-------------------- 222 (334)
T ss_pred ----------------------------------CEEEEecCceeEEeccccccceeecc--------------------
Confidence 56777788899999987654322110
Q ss_pred cccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCC
Q 000703 449 TNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVA 528 (1342)
Q Consensus 449 l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~ 528 (1342)
.+-.|.+...+| .
T Consensus 223 ---------------------------------------------------~P~nV~SASL~P----------------~ 235 (334)
T KOG0278|consen 223 ---------------------------------------------------MPCNVESASLHP----------------K 235 (334)
T ss_pred ---------------------------------------------------CccccccccccC----------------C
Confidence 123455556677 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEe-eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCc
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l-~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1342)
...++.|++|+.++.||..||..+..+ .+|.++|.+|+|+|||.+.+ +|+.|++|+||-...++
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA---------sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA---------SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee---------ccCCCceEEEEEecCCC
Confidence 578889999999999999999998887 89999999999999997664 45667899999876554
No 83
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1.2e-20 Score=221.79 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=211.9
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEE--EEeeecCCCeEE-EEEcC
Q 000703 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVT--ASFSVHNGTVRG-LRWLG 569 (1342)
Q Consensus 493 l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~--~~l~gH~~~V~~-l~fs~ 569 (1342)
+...|.||...|..+++-+ +-.+++|+.||++++|+-..++.+ ..+.+|.+-|.. +++.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~-----------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-----------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE 68 (745)
T ss_pred eEEEeccCccchheeEecC-----------------CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc
Confidence 4446778999998888765 357899999999999997544432 456778777765 77753
Q ss_pred --CCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcc
Q 000703 570 --NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI 647 (1342)
Q Consensus 570 --d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~ 647 (1342)
.++++.++ .|..|.+|.+.++. ++..++| |+..|.++....++. +++||.|.|++||-. ++
T Consensus 69 ~~~~~l~~g~----------~D~~i~v~~~~~~~--P~~~Lkg-H~snVC~ls~~~~~~-~iSgSWD~TakvW~~---~~ 131 (745)
T KOG0301|consen 69 SDKGRLVVGG----------MDTTIIVFKLSQAE--PLYTLKG-HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---GE 131 (745)
T ss_pred ccCcceEeec----------ccceEEEEecCCCC--chhhhhc-cccceeeeecCCcCc-eEecccccceEEecc---hh
Confidence 34666544 44589999998877 7888887 999999999998888 999999999999965 44
Q ss_pred eeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCC
Q 000703 648 MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG 727 (1342)
Q Consensus 648 ~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dg 727 (1342)
+..++. +.++..|..-.. + ...+++|+.|.
T Consensus 132 l~~~l~-gH~asVWAv~~l------------------------------------------------~-e~~~vTgsaDK 161 (745)
T KOG0301|consen 132 LVYSLQ-GHTASVWAVASL------------------------------------------------P-ENTYVTGSADK 161 (745)
T ss_pred hhcccC-Ccchheeeeeec------------------------------------------------C-CCcEEeccCcc
Confidence 555444 334445542100 1 13588999999
Q ss_pred CEEEEEecCCeeeccCCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCceeeeccccccEEEEEEecCC
Q 000703 728 ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVV 806 (1342)
Q Consensus 728 tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~ 806 (1342)
+|++|.- +..++. |.+|..-|..+++ ++..++|++.||.|++||+....+..+.||+..|+++...++
T Consensus 162 tIklWk~-~~~l~t---------f~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~- 230 (745)
T KOG0301|consen 162 TIKLWKG-GTLLKT---------FSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALS- 230 (745)
T ss_pred eeeeccC-Cchhhh---------hccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCC-
Confidence 9999986 444433 4479999999999 888999999999999999955558899999999999996555
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 807 ~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
+ +.+++++.|+|+|||+.. + +...+. | ++..|+++...+. |+ |++|++||.||||....
T Consensus 231 -~----~~Ivs~gEDrtlriW~~~--e-~~q~I~--l-PttsiWsa~~L~N----gD---Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 231 -D----GLIVSTGEDRTLRIWKKD--E-CVQVIT--L-PTTSIWSAKVLLN----GD---IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -C----CeEEEecCCceEEEeecC--c-eEEEEe--c-CccceEEEEEeeC----CC---EEEeccCceEEEEEecc
Confidence 2 689999999999999977 3 333331 2 2357999988876 45 57999999999999773
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=203.47 Aligned_cols=311 Identities=17% Similarity=0.211 Sum_probs=222.8
Q ss_pred ccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeE
Q 000703 484 QADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVR 563 (1342)
Q Consensus 484 ~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~ 563 (1342)
..++.+++.+...+.||...|+.++... ..+.+.+++.|.+.+||.+++|.|+.++.||.+.|+
T Consensus 131 Fk~~t~~~~lvre~~GHkDGiW~Vaa~~----------------tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 131 FKDGTVKFRLVRELEGHKDGIWHVAADS----------------TQPICGTASADHTARIWSLESGACLATYTGHTGSVN 194 (481)
T ss_pred ecCCceeEeehhhhcccccceeeehhhc----------------CCcceeecccccceeEEeeccccceeeeccccccee
Confidence 3456677888888999999999998765 478999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEe-cCCcc------------------cccCc-----ccCEEEEEE--c-CCCc--eeeeEEeccCCCC
Q 000703 564 GLRWLGNSRLVSFS-YSQVN------------------EKSGG-----YINRLVVTC--L-RSGI--NRAFRVLQKPERA 614 (1342)
Q Consensus 564 ~l~fs~d~~llS~s-~d~~~------------------~~sg~-----~~~~i~lwD--~-~tG~--~~~l~~l~g~h~~ 614 (1342)
+|.|++.+.++..+ .|... +-++. .|....-.| . ..|. -.++..+.+ |.+
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~ 273 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRA 273 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-ccc
Confidence 99999988665443 34210 00000 000001011 0 0111 024444566 889
Q ss_pred CeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCce---EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCC
Q 000703 615 PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1342)
Q Consensus 615 ~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~v---t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1342)
.|.+..|-..|+.+++++.|++-.+||+ +++..++.+.++- +.+.
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDV-Etge~v~~LtGHd~ELtHcs------------------------------- 321 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDV-ETGEVVNILTGHDSELTHCS------------------------------- 321 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeee-ccCceeccccCcchhccccc-------------------------------
Confidence 9999999999999999999999999999 7998887665321 1110
Q ss_pred CcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-cCCEEEE
Q 000703 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVM 770 (1342)
Q Consensus 692 g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~Las 770 (1342)
..+...++++.+.|.+.++||... .+.. ...|.||...|+++.| .++.+++
T Consensus 322 ---------------------tHptQrLVvTsSrDtTFRLWDFRe-aI~s------V~VFQGHtdtVTS~vF~~dd~vVS 373 (481)
T KOG0300|consen 322 ---------------------THPTQRLVVTSSRDTTFRLWDFRE-AIQS------VAVFQGHTDTVTSVVFNTDDRVVS 373 (481)
T ss_pred ---------------------cCCcceEEEEeccCceeEeccchh-hcce------eeeecccccceeEEEEecCCceee
Confidence 113345677889999999999852 2211 1235589999999999 6778999
Q ss_pred EeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCccc---ccccCCCCC
Q 000703 771 GDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA---NSLLQPQFP 845 (1342)
Q Consensus 771 Gs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~---~~l~~gh~~ 845 (1342)
|+.|.+|++||++.-+ +.++. -..++..|+.+-. + ..||.--....|||||+.... +. ++-.+||.
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g--~----~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHr- 444 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG--H----PIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHR- 444 (481)
T ss_pred cCCCceEEEeeeccccCcceeee-cCCccceeEeecC--C----ceEEeccCCceEEEEecCCCc-cccCCcccccccc-
Confidence 9999999999998754 44444 3578888888876 2 345555566789999997654 33 23346665
Q ss_pred CCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 846 GTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 846 ~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
--|.+++|..+ .-..-|.++|.|..+-=|.+++.+
T Consensus 445 -RMV~c~AW~ee----hp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 445 -RMVTCCAWLEE----HPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred -eeeeeeecccc----CcccccccccccceeeeeEecccC
Confidence 56999999865 111236799999999999998643
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-19 Score=195.14 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=199.0
Q ss_pred CCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 26 NFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.+++++|+++| +++.+ .+++++|+|..+++.+.++..++- -|..++|.... ..
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----------G~~~~~Fth~~--------------~~ 70 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----------GVDLACFTHHS--------------NT 70 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----------cccEEEEecCC--------------ce
Confidence 47899999999 44444 456999999999999999987764 78999998753 33
Q ss_pred EEEEe--CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000703 104 LAAAD--RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1342)
Q Consensus 104 LASg~--~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1342)
+.-++ .|.+|+.-++.+.+.++.| +||.+ .|..|+-+|.+ +..++++.|.+|++||+++.+|..-+.....+
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF--~GH~~-~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYF--PGHKK-RVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEc--CCCCc-eEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 44444 4889999999999999996 89999 99999999987 78899999999999999988887666543333
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
..+||| .|-.+|++.....|.++|++.-..... ..+.+ . .....+...+.|
T Consensus 145 --i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF--~tf~i----------~--------------~~~~~ew~~l~F 195 (311)
T KOG1446|consen 145 --IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPF--TTFSI----------T--------------DNDEAEWTDLEF 195 (311)
T ss_pred --ceeECC-CCcEEEEecCCCeEEEEEecccCCCCc--eeEcc----------C--------------CCCccceeeeEE
Confidence 579999 899999998777999999765211110 11110 0 011224667899
Q ss_pred ccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccc-eEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 262 SPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAK-FLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 262 Spdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~-~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
||||+.++.....+.+.+.|.-+|+.+.++..+..... ..+..+.||++++.+++.||+|-+|+.++|.+++.+
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 99999999999999999999999999999887655432 256778899999999999999999999999988776
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=218.58 Aligned_cols=276 Identities=14% Similarity=0.189 Sum_probs=209.7
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeeecCCCeEEEEEcCCCc-E
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA--VTASFSVHNGTVRGLRWLGNSR-L 573 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~--~~~~l~gH~~~V~~l~fs~d~~-l 573 (1342)
+..|.+.|..+.|-+ +...|++|+.|..|++|++..++ .+.+|.|-.++|+++.|.++++ +
T Consensus 171 ld~h~gev~~v~~l~----------------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR----------------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hhccccccceeEEcc----------------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE
Confidence 456788888888877 45789999999999999997766 6778889999999999988875 4
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~ 653 (1342)
|+.+. |+.+++|++..++ ...++.| |...|+++.|......+++|+.|.+||+||+ ....|.++.-
T Consensus 235 iAas~----------d~~~r~Wnvd~~r--~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl-~k~~C~kt~l 300 (459)
T KOG0288|consen 235 IAASN----------DKNLRLWNVDSLR--LRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDL-QKAYCSKTVL 300 (459)
T ss_pred EeecC----------CCceeeeeccchh--hhhhhcc-cccceeeehhhccccceeeccccchhhhhhh-hhhheecccc
Confidence 44333 4589999998877 5567777 9999999999988777999999999999999 5676766531
Q ss_pred Cce---EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEE
Q 000703 654 LPF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1342)
Q Consensus 654 ~~v---t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~ 730 (1342)
+. ..++- ....++++-.|++|+
T Consensus 301 -~~S~cnDI~~------------------------------------------------------~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 301 -PGSQCNDIVC------------------------------------------------------SISDVISGHFDKKVR 325 (459)
T ss_pred -ccccccceEe------------------------------------------------------cceeeeecccccceE
Confidence 10 00000 012356777899999
Q ss_pred EEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee-eecc----ccccEEEEEEe
Q 000703 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS-QFST----HREGIRRIKFS 803 (1342)
Q Consensus 731 lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~-~l~~----H~~~V~~v~fS 803 (1342)
.||+.+..... ..|.+ |.|+++.. +|..|.+.+.|.++++.|+++..++ .+.. -..-.+.+.||
T Consensus 326 fwD~Rs~~~~~---sv~~g------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 326 FWDIRSADKTR---SVPLG------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred EEeccCCceee---EeecC------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 99986544321 11221 45776665 8999999999999999999997743 3321 11238899999
Q ss_pred cCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 804 PVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 804 Pd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
|+ + .|+|+||.||.|.||++.+++ +...+...+. ...|+++.|+|. |. .|++++.++.+++|.
T Consensus 397 pd--~----~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s-~~aI~s~~W~~s----G~--~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PD--G----SYVAAGSADGSVYIWSVFTGK-LEKVLSLSTS-NAAITSLSWNPS----GS--GLLSADKQKAVTLWT 459 (459)
T ss_pred CC--C----ceeeeccCCCcEEEEEccCce-EEEEeccCCC-CcceEEEEEcCC----Cc--hhhcccCCcceEecC
Confidence 99 5 789999999999999999998 4444433333 236999999997 66 467999999999993
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=5e-20 Score=195.13 Aligned_cols=268 Identities=16% Similarity=0.229 Sum_probs=205.1
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEe--eecCCCeEEEEEcCCC--c
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF--SVHNGTVRGLRWLGNS--R 572 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l--~gH~~~V~~l~fs~d~--~ 572 (1342)
+++|...|.+|++.. +|..||+|+.|+++++|+++-++..+.+ .+|++.|-.+.|.+.. .
T Consensus 16 ~~~~~~~v~Sv~wn~----------------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC----------------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhhhcceEEEEcc----------------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcc
Confidence 456888999999876 6899999999999999999887666544 6899999999998743 6
Q ss_pred EEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec
Q 000703 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
+++++.+. +|++||++++++......++ ..| -+.++|+|.|++.+.+|..|...|. ++.+...+.
T Consensus 80 ~atas~dk----------~ir~wd~r~~k~~~~i~~~~---eni-~i~wsp~g~~~~~~~kdD~it~id~-r~~~~~~~~ 144 (313)
T KOG1407|consen 80 FATASGDK----------TIRIWDIRSGKCTARIETKG---ENI-NITWSPDGEYIAVGNKDDRITFIDA-RTYKIVNEE 144 (313)
T ss_pred eEEecCCc----------eEEEEEeccCcEEEEeeccC---cce-EEEEcCCCCEEEEecCcccEEEEEe-cccceeehh
Confidence 66666553 89999999998432222222 233 4789999999999999999999999 676666554
Q ss_pred cCc--eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEE
Q 000703 653 ALP--FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1342)
Q Consensus 653 ~~~--vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~ 730 (1342)
+.. +..+.|+-+ ...|......|+|.
T Consensus 145 ~~~~e~ne~~w~~~----------------------------------------------------nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 145 QFKFEVNEISWNNS----------------------------------------------------NDLFFLTNGLGCVE 172 (313)
T ss_pred cccceeeeeeecCC----------------------------------------------------CCEEEEecCCceEE
Confidence 432 244666521 24555556678888
Q ss_pred EEEecC-CeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCC
Q 000703 731 VFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVV 806 (1342)
Q Consensus 731 lwdv~g-~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~ 806 (1342)
+...-. +.+.. ...|.....||.| +|+++|+|+.|-.+.+||+..-. .+.++-|.-+|+.|.||.+
T Consensus 173 ILsypsLkpv~s---------i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d- 242 (313)
T KOG1407|consen 173 ILSYPSLKPVQS---------IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD- 242 (313)
T ss_pred EEeccccccccc---------cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC-
Confidence 876532 22222 2256667788888 89999999999999999998755 5788999999999999999
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCC
Q 000703 807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGAD 873 (1342)
Q Consensus 807 ~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~D 873 (1342)
| ++||+++.|.-|-|=++.+|+.+... .+ .++-..|+|+|. ++ +||-++.|
T Consensus 243 -g----~~lASaSEDh~IDIA~vetGd~~~eI---~~--~~~t~tVAWHPk-----~~-LLAyA~dd 293 (313)
T KOG1407|consen 243 -G----RMLASASEDHFIDIAEVETGDRVWEI---PC--EGPTFTVAWHPK-----RP-LLAYACDD 293 (313)
T ss_pred -c----ceeeccCccceEEeEecccCCeEEEe---ec--cCCceeEEecCC-----Cc-eeeEEecC
Confidence 6 88999999999999999999865432 23 267899999996 55 47777765
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-20 Score=226.58 Aligned_cols=214 Identities=17% Similarity=0.238 Sum_probs=168.0
Q ss_pred eEeec-CCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC---------------
Q 000703 57 ISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL--------------- 120 (1342)
Q Consensus 57 ~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~--------------- 120 (1342)
.|.+. .|.+ .|.+++|||| |.+||||+.||.|+||.+..
T Consensus 259 ~Qe~~~ah~g-----------aIw~mKFS~D--------------GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~ 313 (712)
T KOG0283|consen 259 VQEISNAHKG-----------AIWAMKFSHD--------------GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMY 313 (712)
T ss_pred eeccccccCC-----------cEEEEEeCCC--------------CceeeecCCCceEEEEEEeccchhcccccccchhh
Confidence 45566 8998 9999999987 58899999999999999866
Q ss_pred -----------------Ce----------------------------EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEE
Q 000703 121 -----------------RS----------------------------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1342)
Q Consensus 121 -----------------g~----------------------------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1342)
.. +++ ++.||.+ -|.+|.||.+ .+|+++
T Consensus 314 ~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~--ef~GHt~-DILDlSWSKn----~fLLSS 386 (712)
T KOG0283|consen 314 FEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFC--EFKGHTA-DILDLSWSKN----NFLLSS 386 (712)
T ss_pred hhhhhccccCccccccccccccccccccccCCccccCCCccccccccchh--hhhccch-hheecccccC----CeeEec
Confidence 00 011 1368888 8999999986 589999
Q ss_pred eCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhh
Q 000703 156 NGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLE 235 (1342)
Q Consensus 156 s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~ 235 (1342)
+-|.|++||++...+|+..+.. .+.|+|++|+|-|.+.|++|+.||.+++|.+.. +++..++| +
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--------~~Vv~W~D------l- 450 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--------KKVVDWND------L- 450 (712)
T ss_pred cccccEEeecCCCcceeeEEec-CCeeEEEEecccCCCcEeecccccceEEeecCc--------CeeEeehh------h-
Confidence 9999999999999999988765 899999999999999999999999999998643 22222222 1
Q ss_pred hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEec--CCC----ccceEEEEEcC-C
Q 000703 236 RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL--PRG----CAKFLDVLADP-N 308 (1342)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l--~~~----~~~~~~v~~~p-d 308 (1342)
+..|.+++|+|||+..+.++++|.+++|+....+......+ +++ +..+..+-++| +
T Consensus 451 -----------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~ 513 (712)
T KOG0283|consen 451 -----------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD 513 (712)
T ss_pred -----------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC
Confidence 11367889999999999999999999999998877655443 211 12567777765 3
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 309 NDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 309 g~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
-+.|...+.|..|||.|.++...++.+
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhhhhh
Confidence 346777889999999999765555544
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=225.24 Aligned_cols=254 Identities=14% Similarity=0.203 Sum_probs=180.8
Q ss_pred eeecc-ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC------------------------
Q 000703 494 DGQLQ-ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA------------------------ 548 (1342)
Q Consensus 494 ~g~l~-g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t------------------------ 548 (1342)
.+-++ .|.+.|+++.|++ +|++||+|+.||.||||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~----------------DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~ 322 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSH----------------DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQI 322 (712)
T ss_pred eeccccccCCcEEEEEeCC----------------CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhcccc
Confidence 33455 7999999999998 799999999999999999754
Q ss_pred --------C----------------------------cEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEE
Q 000703 549 --------N----------------------------AVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRL 592 (1342)
Q Consensus 549 --------g----------------------------~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i 592 (1342)
. +...+|.||++.|.+|.|+.++.|||.|-| .|+
T Consensus 323 ~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMD----------KTV 392 (712)
T KOG0283|consen 323 EPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMD----------KTV 392 (712)
T ss_pred CccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEecccc----------ccE
Confidence 0 023467899999999999999999987765 499
Q ss_pred EEEEcCCCceeeeEEeccCCCCCeEEEEEcC-CCCEEEEEECCCCEEEEeccCCcceeeec--cCceEEEEEcCCCCCCC
Q 000703 593 VVTCLRSGINRAFRVLQKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIMLRSL--ALPFTVLEWTLPTVPWP 669 (1342)
Q Consensus 593 ~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Sp-dg~~Las~s~D~tIkvWDl~kt~~~l~~l--~~~vt~l~wsp~~~~~~ 669 (1342)
+||++.... ++.++. |..-|+||+|+| |.+|+++|+-|+.||||++ ...+...-. ..-||++++.|+
T Consensus 393 RLWh~~~~~--CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~Pd----- 462 (712)
T KOG0283|consen 393 RLWHPGRKE--CLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI-SDKKVVDWNDLRDLITAVCYSPD----- 462 (712)
T ss_pred EeecCCCcc--eeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeec-CcCeeEeehhhhhhheeEEeccC-----
Confidence 999997766 677664 889999999999 7899999999999999999 343332211 112344555443
Q ss_pred CCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCC
Q 000703 670 SQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSS 749 (1342)
Q Consensus 670 ~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~ 749 (1342)
++..++|+.+|.+++|+.++.++..
T Consensus 463 -----------------------------------------------Gk~avIGt~~G~C~fY~t~~lk~~~-------- 487 (712)
T KOG0283|consen 463 -----------------------------------------------GKGAVIGTFNGYCRFYDTEGLKLVS-------- 487 (712)
T ss_pred -----------------------------------------------CceEEEEEeccEEEEEEccCCeEEE--------
Confidence 2334455566666666655544321
Q ss_pred ccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEEC
Q 000703 750 SFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1342)
Q Consensus 750 ~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl 829 (1342)
. ..|++= .++ . ..|+ .|+.+.|.|..+ .+|++.++|..|||+|+
T Consensus 488 ----------~--------------~~I~~~---~~K--k-~~~~-rITG~Q~~p~~~-----~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 488 ----------D--------------FHIRLH---NKK--K-KQGK-RITGLQFFPGDP-----DEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ----------e--------------eeEeec---cCc--c-ccCc-eeeeeEecCCCC-----CeEEEecCCCceEEEec
Confidence 0 000000 000 1 1244 899999999843 47899999999999999
Q ss_pred CCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 830 DSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 830 ~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+..+ +...+ .|......-....|+.| |+ .|++|+.|.-|.+|+..
T Consensus 532 ~~~~-lv~Kf-KG~~n~~SQ~~Asfs~D----gk--~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 532 RDKD-LVHKF-KGFRNTSSQISASFSSD----GK--HIVSASEDSWVYIWKND 576 (712)
T ss_pred cchh-hhhhh-cccccCCcceeeeEccC----CC--EEEEeecCceEEEEeCC
Confidence 7766 44445 34332233455688887 66 67899999999999975
No 90
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1.6e-19 Score=220.95 Aligned_cols=263 Identities=14% Similarity=0.129 Sum_probs=184.7
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCceeEE-----------EecCCCccceEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFS-----------AALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~-----------~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~ 326 (1342)
..+++|+.+++++..+..+..|+...+..+-. ..+.++.+.+.++.++| |+.+|++++.||+|++|++
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 36778878888887777777887654432210 01234557788999999 8899999999999999998
Q ss_pred cCCce-------eeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCccccccccc
Q 000703 327 KEGEQ-------VHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLL 399 (1342)
Q Consensus 327 ~~g~~-------~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 399 (1342)
.++.. +..+. |+ ...|..+.++|+.
T Consensus 106 ~~~~~~~~~~~~l~~L~---------gH---~~~V~~l~f~P~~------------------------------------ 137 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQ---------GH---TKKVGIVSFHPSA------------------------------------ 137 (493)
T ss_pred CCCccccccCcceEEec---------CC---CCcEEEEEeCcCC------------------------------------
Confidence 75421 11111 11 1145555555431
Q ss_pred CccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCC
Q 000703 400 SKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSN 479 (1342)
Q Consensus 400 ~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~ 479 (1342)
+..|++++.||+|++||+.++....
T Consensus 138 -~~iLaSgs~DgtVrIWDl~tg~~~~------------------------------------------------------ 162 (493)
T PTZ00421 138 -MNVLASAGADMVVNVWDVERGKAVE------------------------------------------------------ 162 (493)
T ss_pred -CCEEEEEeCCCEEEEEECCCCeEEE------------------------------------------------------
Confidence 3489999999999999987542110
Q ss_pred CCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecC
Q 000703 480 STSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHN 559 (1342)
Q Consensus 480 ~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~ 559 (1342)
.+.+|...|++++|+| ++.+||+|+.||+|+|||+.+++.+.++.+|.
T Consensus 163 ----------------~l~~h~~~V~sla~sp----------------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 163 ----------------VIKCHSDQITSLEWNL----------------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred ----------------EEcCCCCceEEEEEEC----------------CCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 1234778899999998 58999999999999999999999999999998
Q ss_pred CCe-EEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEE-CCCC
Q 000703 560 GTV-RGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILF-RDAP 636 (1342)
Q Consensus 560 ~~V-~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s-~D~t 636 (1342)
+.+ ..+.|.+++ .+++.+.+ +..+++|++||+++... ++..........+....|++++++|++++ .|+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s------~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCS------KSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecC------CCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 653 467788765 56665543 23467999999987542 33332222334566778999999999887 4999
Q ss_pred EEEEeccCCcceeeecc----CceEEEEEcCC
Q 000703 637 VEVWAMTKNPIMLRSLA----LPFTVLEWTLP 664 (1342)
Q Consensus 637 IkvWDl~kt~~~l~~l~----~~vt~l~wsp~ 664 (1342)
|++||+ .++.++.... .++.+++|.|.
T Consensus 284 Iriwdl-~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 284 IRCFEL-MNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEe-eCCceEEEeeccCCCCCcceEeccc
Confidence 999999 6777665432 23456666653
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=8.9e-20 Score=196.80 Aligned_cols=258 Identities=20% Similarity=0.280 Sum_probs=189.1
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcE-EEEeeecCCCeEEEEEcCCCcEEEEec
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAV-TASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~-~~~l~gH~~~V~~l~fs~d~~llS~s~ 578 (1342)
...|.+|+|+|. ...+++.|+.||+||+|+++. |.. .+....|.++|.+++|+.||..+-
T Consensus 27 ~DsIS~l~FSP~---------------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf--- 88 (347)
T KOG0647|consen 27 EDSISALAFSPQ---------------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVF--- 88 (347)
T ss_pred ccchheeEeccc---------------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEE---
Confidence 356889999992 467899999999999999976 443 345567999999999999985442
Q ss_pred CCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCC--EEEEEECCCCEEEEeccCCcceeeeccCc-
Q 000703 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGR--YLLILFRDAPVEVWAMTKNPIMLRSLALP- 655 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~--~Las~s~D~tIkvWDl~kt~~~l~~l~~~- 655 (1342)
+|+.|+.+++||+.+|+...+. .|..+|+.+.|-+-.. .|++||.|++||.||+ +..+.+.++..|
T Consensus 89 ------~g~~Dk~~k~wDL~S~Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~-R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 89 ------SGGCDKQAKLWDLASGQVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT-RSSNPVATLQLPE 157 (347)
T ss_pred ------eeccCCceEEEEccCCCeeeee----ecccceeEEEEecCCCcceeEecccccceeeccc-CCCCeeeeeeccc
Confidence 2344568999999999844433 3899999999987665 7999999999999999 777666655422
Q ss_pred -eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 656 -FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 656 -vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
+.++ | -..+.++++..+..|.+|++
T Consensus 158 RvYa~----D--------------------------------------------------v~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 158 RVYAA----D--------------------------------------------------VLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeeeh----h--------------------------------------------------ccCceeEEEecCCcEEEEEc
Confidence 1111 0 01256788999999999999
Q ss_pred cCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc---eeeeccccc---------cEEEE
Q 000703 735 HGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH---SSQFSTHRE---------GIRRI 800 (1342)
Q Consensus 735 ~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~---~~~l~~H~~---------~V~~v 800 (1342)
++... .++. ..+ . -.-.+.||+. |.+..+.|+-+|.+-+..+..+. -.+|..|+. .|.+|
T Consensus 184 ~n~~t-e~k~-~~S-p---Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 184 ENPPT-EFKR-IES-P---LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred CCCcc-hhhh-hcC-c---ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 54322 1110 000 0 1124677776 77777999999999999998852 345667763 57889
Q ss_pred EEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCC
Q 000703 801 KFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1342)
Q Consensus 801 ~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d 857 (1342)
+|+|.. +.|+++|.||++..||-+.+..|... +. +..+|....|+.+
T Consensus 258 ~FhP~h------gtlvTaGsDGtf~FWDkdar~kLk~s--~~--~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 258 AFHPVH------GTLVTAGSDGTFSFWDKDARTKLKTS--ET--HPQPITCCSFNRN 304 (347)
T ss_pred Eeeccc------ceEEEecCCceEEEecchhhhhhhcc--Cc--CCCccceeEecCC
Confidence 999972 68999999999999998877644321 22 3478999999886
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6e-20 Score=209.21 Aligned_cols=297 Identities=16% Similarity=0.146 Sum_probs=226.5
Q ss_pred CCccccccccCCCCCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecC
Q 000703 9 ADSWDCNFMLPGPPSRNNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPI 86 (1342)
Q Consensus 9 ~~~~~~~~~lpg~~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~ 86 (1342)
.-.|+-....|-+-..+.+.+++|||.- -+|..++-.|.|++..+.+.+.++..-+. .|.++.|..|
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----------~v~s~~fR~D 79 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----------VVYSVDFRSD 79 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhcc-----------ceeEEEeecC
Confidence 3349874444443334568999999965 47777888899999999988888877777 8999999976
Q ss_pred CCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEEC
Q 000703 87 TLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT 166 (1342)
Q Consensus 87 ~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~ 166 (1342)
|.+||.|+..|.|+|.|..+...++. +.+|+. ||..+.|+|.++ .+|++++.|+.+++||+
T Consensus 80 --------------G~LlaaGD~sG~V~vfD~k~r~iLR~--~~ah~a-pv~~~~f~~~d~--t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 80 --------------GRLLAAGDESGHVKVFDMKSRVILRQ--LYAHQA-PVHVTKFSPQDN--TMLVSGSDDKVVKYWDL 140 (487)
T ss_pred --------------CeEEEccCCcCcEEEeccccHHHHHH--HhhccC-ceeEEEecccCC--eEEEecCCCceEEEEEc
Confidence 68999999999999999776555555 478888 999999999763 79999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCC
Q 000703 167 TSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLS 246 (1342)
Q Consensus 167 ~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~ 246 (1342)
.++.....+.+|.+.|.|.+|+|-.+..+++||-||+|++||.....+ ..-++
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el------------------------ 193 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL------------------------ 193 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe------------------------
Confidence 999876678999999999999998888999999999999999765311 01111
Q ss_pred CCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCce-eEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000703 247 PASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP-LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1342)
Q Consensus 247 p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~-l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1342)
.++.| |-++.|-|.|..+++++ .+.|+|||+-+|.. +.... .+...+..+....|+..|++++.|+.|++++
T Consensus 194 --nhg~p--Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 194 --NHGCP--VESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred --cCCCc--eeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEE
Confidence 12233 55679999987777765 57899999996644 33222 2345566777777999999999999999999
Q ss_pred ccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEE
Q 000703 326 RKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLI 405 (1342)
Q Consensus 326 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~la 405 (1342)
...-.-++.+. ..+.|+.++++|+ +++++
T Consensus 267 ~t~~Kvv~s~~-------------~~~pvLsiavs~d--------------------------------------d~t~v 295 (487)
T KOG0310|consen 267 TTNYKVVHSWK-------------YPGPVLSIAVSPD--------------------------------------DQTVV 295 (487)
T ss_pred ccceEEEEeee-------------cccceeeEEecCC--------------------------------------CceEE
Confidence 65544344430 1125777777765 35888
Q ss_pred EEEcCCcEEEEEccc
Q 000703 406 SISDDGKVWNWLLTA 420 (1342)
Q Consensus 406 s~s~DG~v~lWdl~~ 420 (1342)
.|-.||.+-+=+...
T Consensus 296 iGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREV 310 (487)
T ss_pred Eecccceeeeehhhc
Confidence 898999887664443
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=3e-20 Score=199.92 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=191.6
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc------------------ceeEeecCCCCCCCCCCCCCCC
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL------------------QLISTIPIPPPTSAGSVASLSP 76 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~------------------~~~~~l~~H~~~~~~~~~~~~~ 76 (1342)
.|+- |.....|.+||||| |+|+|+ +.+|.|.|+..+ -++.+|-.|.+
T Consensus 107 ylt~--HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d----------- 173 (430)
T KOG0640|consen 107 YLTS--HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD----------- 173 (430)
T ss_pred EEee--cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-----------
Confidence 4444 67778899999999 999986 679999998732 24788999998
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.|+.+.|+|. ..+|+||++|++|+++|+......+-+....... +|.+|.|.|.| ++|+++.
T Consensus 174 evn~l~FHPr--------------e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~-~vrsiSfHPsG---efllvgT 235 (430)
T KOG0640|consen 174 EVNDLDFHPR--------------ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE-PVRSISFHPSG---EFLLVGT 235 (430)
T ss_pred cccceeecch--------------hheEEeccCCCeEEEEecccHHHHHHHHHhhccc-eeeeEeecCCC---ceEEEec
Confidence 9999999986 4899999999999999997654433332222234 89999999988 8999998
Q ss_pred CCCeEEEEECCCCeEEEEE---eCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhh
Q 000703 157 GPSVLSLYNTTSASCMWKY---DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLK 233 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~---~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~ 233 (1342)
.-.+++|||+.|-+|...- +.|.+.|+++.+++ .++..++++.||.|++||--. .+ ...+
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS-------~r---------Cv~t 298 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS-------NR---------CVRT 298 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc-------HH---------HHHH
Confidence 8899999999998886432 35677899999999 999999999999999998311 11 1122
Q ss_pred hhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCcc--ceE-EEEEcCCCC
Q 000703 234 LERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCA--KFL-DVLADPNND 310 (1342)
Q Consensus 234 l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~--~~~-~v~~~pdg~ 310 (1342)
+.+.. ....|.+..|+.+|+.+++.+-|..|++|.+.+|+.+.+....+..+ .+. +-.|.-..+
T Consensus 299 ~~~AH-------------~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd 365 (430)
T KOG0640|consen 299 IGNAH-------------GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED 365 (430)
T ss_pred HHhhc-------------CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc
Confidence 22211 12358889999999999999999999999999999998776432111 121 222333344
Q ss_pred EEEEE-eCCCcEEEEEccCCceeeeE
Q 000703 311 LLYCA-HLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 311 ~L~s~-~~DgtI~lW~~~~g~~~~~~ 335 (1342)
++..- -..+.+.-||.++++.+..+
T Consensus 366 yVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 366 YVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred eEEccccccCceeeccccchhhhhhc
Confidence 44432 23467788999987754443
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=191.35 Aligned_cols=278 Identities=14% Similarity=0.206 Sum_probs=204.0
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC-cEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~-~llS 575 (1342)
|+||..++|-|++.- +|.||.+++.|.++-||-...|+.+.++.||+++|.++...-+. .+++
T Consensus 6 l~GHERplTqiKyN~----------------eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR----------------EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccCccccceEEecC----------------CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeee
Confidence 567999999999876 69999999999999999999999999999999999999987776 4554
Q ss_pred EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEEC-----CCCEEEEeccCCcc---
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR-----DAPVEVWAMTKNPI--- 647 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~-----D~tIkvWDl~kt~~--- 647 (1342)
|..|++++|||+++|+ ++..++ -..+|+.+.|+++|++++.... .+.|.++|+ +...
T Consensus 70 ----------GSAD~t~kLWDv~tGk--~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi-~~~~~~~ 134 (327)
T KOG0643|consen 70 ----------GSADQTAKLWDVETGK--QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI-RDDSSDI 134 (327)
T ss_pred ----------ccccceeEEEEcCCCc--EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc-cCChhhh
Confidence 4446799999999999 555443 3578999999999999887654 357889998 4221
Q ss_pred ----eeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE
Q 000703 648 ----MLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1342)
Q Consensus 648 ----~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l 720 (1342)
++..+. ..++.+-|. +-++.+
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg----------------------------------------------------~l~~~i 162 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWG----------------------------------------------------PLGETI 162 (327)
T ss_pred cccCceEEecCCccceeeeeec----------------------------------------------------ccCCEE
Confidence 111111 112333333 235778
Q ss_pred EEEecCCCEEEEEec-CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCce-eeecccccc
Q 000703 721 AFALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHS-SQFSTHREG 796 (1342)
Q Consensus 721 a~~~~DgtI~lwdv~-g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~-~~l~~H~~~ 796 (1342)
+++..||.|..||+. |..+.+.. ..|...|+.|.+ |..+.++|+.|.+-++||+.+-+. +++. -..+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~--------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~P 233 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSD--------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERP 233 (327)
T ss_pred EEecCCCcEEEEEcccCceeeech--------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccc
Confidence 899999999999995 44443311 136668999988 899999999999999999998764 4443 4789
Q ss_pred EEEEEEecCCCCCCCCCEEEEEECCCe--------------EEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCC
Q 000703 797 IRRIKFSPVVPGDRSRGRIAVLFHDNT--------------FSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKN 862 (1342)
Q Consensus 797 V~~v~fSPd~~g~~~~~~Las~s~Dgt--------------I~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g 862 (1342)
|.+.+++|. . ..++.++.-.. .|.+++-..|++.+ ..||. ++|.+|+|+|+ |
T Consensus 234 vN~aaisP~--~----d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr--vkGHF--GPINsvAfhPd----G 299 (327)
T KOG0643|consen 234 VNTAAISPL--L----DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR--VKGHF--GPINSVAFHPD----G 299 (327)
T ss_pred ccceecccc--c----ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc--ccccc--cCcceeEECCC----C
Confidence 999999997 2 23333322111 12222222233332 25776 78999999998 7
Q ss_pred CCeEEEEEeCCCcEEEEEcc
Q 000703 863 DPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 863 ~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+. .+||+.||.||+.-..
T Consensus 300 ks--YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 300 KS--YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cc--cccCCCCceEEEEEec
Confidence 74 4899999999998665
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.7e-19 Score=191.71 Aligned_cols=279 Identities=14% Similarity=0.169 Sum_probs=211.4
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC-cEEEEecC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVSFSYS 579 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~-~llS~s~d 579 (1342)
...|++|.|++ +|.++++.++|.+|+|||..+|...+++.-+...|..++|.... .++..+.
T Consensus 14 ~~~i~sl~fs~----------------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt- 76 (311)
T KOG1446|consen 14 NGKINSLDFSD----------------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST- 76 (311)
T ss_pred CCceeEEEecC----------------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-
Confidence 46899999998 68899999999999999999999999998888889999996544 4444322
Q ss_pred CcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCce-EE
Q 000703 580 QVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-TV 658 (1342)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~v-t~ 658 (1342)
..|++|+..++.+.+ .+|.+.| |...|.+|..+|-+..+++++.|++|++||+ +..++...+.... ..
T Consensus 77 -------k~d~tIryLsl~dNk--ylRYF~G-H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl-R~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 77 -------KEDDTIRYLSLHDNK--YLRYFPG-HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL-RVKKCQGLLNLSGRPI 145 (311)
T ss_pred -------CCCCceEEEEeecCc--eEEEcCC-CCceEEEEEecCCCCeEEecccCCeEEeeEe-cCCCCceEEecCCCcc
Confidence 346799999999877 8998888 8999999999999999999999999999999 7766654433111 11
Q ss_pred EEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCC-
Q 000703 659 LEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR- 737 (1342)
Q Consensus 659 l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~- 737 (1342)
.++. +.+-.||.+.....|++||++.-
T Consensus 146 ~AfD----------------------------------------------------p~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 146 AAFD----------------------------------------------------PEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred eeEC----------------------------------------------------CCCcEEEEecCCCeEEEEEecccC
Confidence 3343 33566788877779999999432
Q ss_pred --eeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccE---EEEEEecCCCCC
Q 000703 738 --RIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGI---RRIKFSPVVPGD 809 (1342)
Q Consensus 738 --~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V---~~v~fSPd~~g~ 809 (1342)
....+. +.. +-....+.|.| ||+.|+.....+.+++-|.-+|. ..++.+|...= .+..|+|| +
T Consensus 174 kgPF~tf~--i~~----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd--s- 244 (311)
T KOG1446|consen 174 KGPFTTFS--ITD----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD--S- 244 (311)
T ss_pred CCCceeEc--cCC----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC--C-
Confidence 222111 110 11234567777 99999999999999999999998 56676666443 56789999 5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+.+++++.||+|.+|+++++..+.. + .+- ..+.+..+.|+|. +..-+++|..+-+|-..
T Consensus 245 ---~Fvl~gs~dg~i~vw~~~tg~~v~~-~-~~~-~~~~~~~~~fnP~--------~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 245 ---KFVLSGSDDGTIHVWNLETGKKVAV-L-RGP-NGGPVSCVRFNPR--------YAMFVSASSNLVFWLPD 303 (311)
T ss_pred ---cEEEEecCCCcEEEEEcCCCcEeeE-e-cCC-CCCCccccccCCc--------eeeeeecCceEEEEecc
Confidence 7899999999999999999986543 3 231 1367888999995 23345677888888654
No 96
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=1.7e-19 Score=221.75 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=161.4
Q ss_pred EEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCC-CcE-EEEecCCcccccCcccCEEEEEEcCCCce------eee
Q 000703 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN-SRL-VSFSYSQVNEKSGGYINRLVVTCLRSGIN------RAF 605 (1342)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d-~~l-lS~s~d~~~~~sg~~~~~i~lwD~~tG~~------~~l 605 (1342)
.|+.+|.|+||+......+..+.+|.++|.+++|+|+ +.+ ++++ .|++|+|||+.++.. .++
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS----------~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS----------EDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe----------CCCeEEEEECCCCCccccccccce
Confidence 4678899999999888888899999999999999996 444 4433 356999999986521 123
Q ss_pred EEeccCCCCCeEEEEEcCCCCEE-EEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 606 RVLQKPERAPIRALRASSSGRYL-LILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 606 ~~l~g~h~~~I~~i~~Spdg~~L-as~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
..+.+ |...|.+|+|+|++.++ ++++.|++|+|||+ +++..+..+.
T Consensus 119 ~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl-~tg~~~~~i~------------------------------- 165 (568)
T PTZ00420 119 CILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI-ENEKRAFQIN------------------------------- 165 (568)
T ss_pred EEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC-CCCcEEEEEe-------------------------------
Confidence 34444 88899999999998764 68899999999999 5543221110
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~- 763 (1342)
|...|.+++|
T Consensus 166 ---------------------------------------------------------------------~~~~V~Slsws 176 (568)
T PTZ00420 166 ---------------------------------------------------------------------MPKKLSSLKWN 176 (568)
T ss_pred ---------------------------------------------------------------------cCCcEEEEEEC
Confidence 0012556666
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEE-----EecCCCCCCCCCEEEEEECCC----eEEEEECCC-
Q 000703 764 -RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIK-----FSPVVPGDRSRGRIAVLFHDN----TFSVFDLDS- 831 (1342)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~-----fSPd~~g~~~~~~Las~s~Dg----tI~IWDl~t- 831 (1342)
+|++|++++.|++|+|||+++++ +.++.+|.+.+.... |+|+ + ++|++++.|+ +|+|||++.
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d--~----~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD--D----NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC--C----CEEEEEEcCCCCccEEEEEECCCC
Confidence 89999999999999999999987 577899998764433 4566 3 6888877664 799999995
Q ss_pred CCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 832 QDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 832 ~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
.+++. .. ..+. ...++-..|.++ ..+++++|+.|++||+|++..+.
T Consensus 251 ~~pl~-~~-~ld~-~~~~L~p~~D~~-----tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 251 TSALV-TM-SIDN-ASAPLIPHYDES-----TGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCceE-EE-EecC-CccceEEeeeCC-----CCCEEEEEECCCeEEEEEccCCc
Confidence 34332 21 1111 122333344444 33367899999999999997553
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=8.2e-21 Score=211.79 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=200.6
Q ss_pred ccCCCCCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC
Q 000703 17 MLPGPPSRNNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1342)
+|-|. ..++.++++.+++ .||.+.++.+++|+..+++...+|.||++ .|++++|...
T Consensus 214 tLaGs--~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----------kVt~ak~~~~-------- 272 (459)
T KOG0288|consen 214 TLAGS--LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----------KVTAAKFKLS-------- 272 (459)
T ss_pred hhhcc--CCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccc-----------ceeeehhhcc--------
Confidence 45553 2468899999998 78888899999999999999999999999 9999999864
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE
Q 000703 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK 174 (1342)
Q Consensus 95 ~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~ 174 (1342)
..+++||+.|.+|++||+..+.|..+. +++ . .+.+++.++ ..+.+++-|..|++||.+++.++..
T Consensus 273 ------~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~--S-~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 273 ------HSRVVSGSADRTIKLWDLQKAYCSKTV-LPG--S-QCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred ------ccceeeccccchhhhhhhhhhheeccc-ccc--c-cccceEecc-----eeeeecccccceEEEeccCCceeeE
Confidence 244999999999999999999888875 333 2 578887763 5688999999999999999999998
Q ss_pred EeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000703 175 YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1342)
Q Consensus 175 ~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1342)
... .+.|+++..++ ++..|.+++.|.++.+.|+++.. ++..+ +-.+.. ...
T Consensus 338 v~~-gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~e-----I~~~~---------sA~g~k-------------~as 388 (459)
T KOG0288|consen 338 VPL-GGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKE-----IRQTF---------SAEGFK-------------CAS 388 (459)
T ss_pred eec-CcceeeEeecc-CCeEEeeecCCCceeeeeccccc-----EEEEe---------eccccc-------------ccc
Confidence 888 56999999998 99999999999999999876531 11110 000000 011
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1342)
...++.||||++++++++.||.|+||++.++++...+...+....+.++.++|-|+.|++++.++.+++|.
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 35677999999999999999999999999999988877665555689999999999999999999999993
No 98
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=191.36 Aligned_cols=219 Identities=9% Similarity=0.014 Sum_probs=171.8
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee
Q 000703 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ 138 (1342)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~ 138 (1342)
.|.||.. ++|.|++..+ |.+|.|++.|.++.||-..+|+.+-++ .||++ .|.
T Consensus 5 ~l~GHER-----------plTqiKyN~e--------------GDLlFscaKD~~~~vw~s~nGerlGty--~GHtG-avW 56 (327)
T KOG0643|consen 5 LLQGHER-----------PLTQIKYNRE--------------GDLLFSCAKDSTPTVWYSLNGERLGTY--DGHTG-AVW 56 (327)
T ss_pred ccccCcc-----------ccceEEecCC--------------CcEEEEecCCCCceEEEecCCceeeee--cCCCc-eEE
Confidence 3779998 8999999987 578999999999999999999999984 89999 999
Q ss_pred EEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeC-----CCeEEEEEecCCc
Q 000703 139 DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGL-----KGLLLSVRVLGQK 213 (1342)
Q Consensus 139 ~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~-----dG~v~~~d~~~~~ 213 (1342)
++.-..+. +.|+++++|.+++|||+.+|+++.+... ..+|..+.|++ ++.++++... .+.|.++|+....
T Consensus 57 ~~Did~~s---~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 57 CCDIDWDS---KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred EEEecCCc---ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98877655 8999999999999999999999988887 68899999998 7777766633 4688888775422
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEec
Q 000703 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l 293 (1342)
. +...++.. .++. .| ...+.++-++|-++.|+++-.|+.|.+||+++|+.+-...
T Consensus 132 ~-~~~s~ep~--------~kI~----------t~-----~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~- 186 (327)
T KOG0643|consen 132 S-DIDSEEPY--------LKIP----------TP-----DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD- 186 (327)
T ss_pred h-hhcccCce--------EEec----------CC-----ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech-
Confidence 1 11111100 0000 00 1235667899999999999999999999999986543221
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
..+...+.++-++||+.++++++.|.+-+|||..+-+.+.++
T Consensus 187 ~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 187 EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred hhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 223457888999999999999999999999999877655544
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=9.2e-20 Score=224.85 Aligned_cols=289 Identities=16% Similarity=0.172 Sum_probs=209.8
Q ss_pred CCceEeCCCC-eEEEEc---CCeEEEEeCCC------------cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcc
Q 000703 27 FGSADLSPSG-LLAFAS---GSSISILDSRS------------LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRC 90 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs---~~~V~v~d~~s------------~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~ 90 (1342)
.-+||.+|+| .+|+|. ++.++||.... .+.+.++..|.+ .|+||+||||
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-----------sv~CVR~S~d---- 80 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-----------SVNCVRFSPD---- 80 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-----------ceeEEEECCC----
Confidence 4589999999 788875 56788998653 234677888998 9999999987
Q ss_pred ccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-------Ce-----------EEEEecCCCCCCCCeeEEEEeecCCCCcEE
Q 000703 91 DLLSTEPGSSHLLLAAADRHGRVALLDFRL-------RS-----------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVL 152 (1342)
Q Consensus 91 ~~~s~~~~p~g~~LASg~~dG~V~vWD~~~-------g~-----------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lL 152 (1342)
|.+||||++|+.|.||+... |. ++.. +.+|.. .|.+++|+|++ .+|
T Consensus 81 ----------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~--l~~H~~-DV~Dv~Wsp~~---~~l 144 (942)
T KOG0973|consen 81 ----------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI--LRGHDS-DVLDVNWSPDD---SLL 144 (942)
T ss_pred ----------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEE--EecCCC-ccceeccCCCc---cEE
Confidence 58899999999999999872 11 3333 468888 99999999977 899
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhh
Q 000703 153 AAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELL 232 (1342)
Q Consensus 153 as~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~ 232 (1342)
|+++.|++|.|||..+.+++..+.+|...|..++||| -++.||+-+.|++|++|+... |.+. .
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~d----------w~i~------k 207 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSD----------WGIE------K 207 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccc----------ceee------E
Confidence 9999999999999999999999999999999999999 899999999999999997432 1110 0
Q ss_pred hhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc----CCeEEEEEccCCceeEEEecCCCccceEEEEEcC-
Q 000703 233 KLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF----PRELVVFDLQYETPLFSAALPRGCAKFLDVLADP- 307 (1342)
Q Consensus 233 ~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~----d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~p- 307 (1342)
++...+ .+.....+..++.+||||.+|++.-. -.++.|.+-.+-+.-..+.. |.++..-+.|.|
T Consensus 208 ~It~pf---------~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~ 276 (942)
T KOG0973|consen 208 SITKPF---------EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPK 276 (942)
T ss_pred eeccch---------hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChH
Confidence 000111 11112336789999999999988752 34688888766554444443 445666666664
Q ss_pred ----CC--------C----EEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhh
Q 000703 308 ----NN--------D----LLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAK 371 (1342)
Q Consensus 308 ----dg--------~----~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k 371 (1342)
+. + .+|+|+.|++|.||....-.++.+. ++ .|+ +
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---~~-----------------lf~----------~ 326 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---HN-----------------LFN----------K 326 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---hh-----------------hhc----------C
Confidence 12 2 6889999999999997533221111 01 011 1
Q ss_pred hcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccc
Q 000703 372 LCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGA 423 (1342)
Q Consensus 372 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~ 423 (1342)
. ..+|+++|. |-.|..+|.||+|.+..+.....
T Consensus 327 S----------------I~DmsWspd---G~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 327 S----------------IVDMSWSPD---GFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred c----------------eeeeeEcCC---CCeEEEEecCCeEEEEEcchHHh
Confidence 1 233444442 67899999999999999975543
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=7.5e-20 Score=196.90 Aligned_cols=283 Identities=17% Similarity=0.282 Sum_probs=205.2
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC------------C------cEEEEeeec
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA------------N------AVTASFSVH 558 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t------------g------~~~~~l~gH 558 (1342)
+..|.+++.+.+|+| +|.++|+|+.|-+|+|.|++. | .++++|.-|
T Consensus 108 lt~HK~~cR~aafs~----------------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSP----------------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred EeecccceeeeeeCC----------------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 456899999999998 799999999999999999861 1 367899999
Q ss_pred CCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCC-ceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCE
Q 000703 559 NGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG-INRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPV 637 (1342)
Q Consensus 559 ~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG-~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tI 637 (1342)
...|+++.|.|-..++. +|.-|++|+++|...- ..+.++.++ +..+|++|.|+|.|.||++|....++
T Consensus 172 ~devn~l~FHPre~ILi---------S~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILI---------SGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred cCcccceeecchhheEE---------eccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCce
Confidence 99999999999876654 3344679999998532 223455554 45799999999999999999999999
Q ss_pred EEEeccCCcceeeecc------CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCC
Q 000703 638 EVWAMTKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEG 711 (1342)
Q Consensus 638 kvWDl~kt~~~l~~l~------~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~ 711 (1342)
++||+ .+-+|.-.-. ..|+.+..+
T Consensus 241 rlYdv-~T~QcfvsanPd~qht~ai~~V~Ys------------------------------------------------- 270 (430)
T KOG0640|consen 241 RLYDV-NTYQCFVSANPDDQHTGAITQVRYS------------------------------------------------- 270 (430)
T ss_pred eEEec-cceeEeeecCcccccccceeEEEec-------------------------------------------------
Confidence 99999 5765543211 112222222
Q ss_pred cCCCCCCeEEEEecCCCEEEEEe-cCCeeeccCCCCCCCccccccc-eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-
Q 000703 712 SQDDTSESFAFALANGALGVFEV-HGRRIRDFRPKWPSSSFISSDG-LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH- 786 (1342)
Q Consensus 712 s~~~~~e~la~~~~DgtI~lwdv-~g~~v~d~~~~~~~~~~~~~~~-~V~~va~--dg~~LasGs~DgtI~lWDl~tg~- 786 (1342)
+.+...++++.||.|++||- .++.++.++. .|.+ .|++..| +|++|.+.+.|.++++|.+.+|+
T Consensus 271 ---~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 271 ---STGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ---CCccEEEEeccCCcEEeeccccHHHHHHHHh--------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 33567899999999999995 6666654321 2333 5777778 99999999999999999999988
Q ss_pred eeeeccc--ccc---EEEEEEecCCCCCCCCCEEEEE-ECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCC
Q 000703 787 SSQFSTH--REG---IRRIKFSPVVPGDRSRGRIAVL-FHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTD 860 (1342)
Q Consensus 787 ~~~l~~H--~~~---V~~v~fSPd~~g~~~~~~Las~-s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~ 860 (1342)
+..+.|- ++. -+...|... ..+++.- -..+.+.-||.++.+.+ ..+..||+ +.+.-+.-+|.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNht------EdyVl~pDEas~slcsWdaRtadr~-~l~slgHn--~a~R~i~HSP~--- 407 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHT------EDYVLFPDEASNSLCSWDARTADRV-ALLSLGHN--GAVRWIVHSPV--- 407 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCc------cceEEccccccCceeeccccchhhh-hhcccCCC--CCceEEEeCCC---
Confidence 4444321 121 122234333 1343322 13467889999998854 23445776 67888888996
Q ss_pred CCCCeEEEEEeCCCcEEEEEcc
Q 000703 861 KNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 861 ~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
.+ .+.++|.|-.+|+|--.
T Consensus 408 --~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 --EP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred --CC-ceeeecccceeeeeeec
Confidence 56 46799999999999644
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.2e-20 Score=217.80 Aligned_cols=238 Identities=13% Similarity=0.208 Sum_probs=202.8
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecC-CCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCC
Q 000703 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPI-PPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSS 100 (1342)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~-H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~ 100 (1342)
.+-+.++.|+++| .||.|. ++.|.|||..+.+.+.++.+ |.. .|-+++|..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~-----------rvg~laW~~--------------- 270 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS-----------RVGSLAWNS--------------- 270 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc-----------eeEEEeccC---------------
Confidence 4568899999999 899885 68999999999999999999 887 999999983
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
..|.+|+.||.|..+|++.++.... .+.+|.. .|..|.|++++ .+||+++.|+.+.|||.....++.++..|..
T Consensus 271 -~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~q-eVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a 344 (484)
T KOG0305|consen 271 -SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQ-EVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTA 344 (484)
T ss_pred -ceEEEecCCCcEEEEEEecchhhhh-hhhcccc-eeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccce
Confidence 4699999999999999998876655 3578888 99999999988 8999999999999999988888888999899
Q ss_pred ceEEEEecCCCCCEEEEEe--CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 181 YLSCIRRNPFDARHFCVLG--LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s--~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.|..++|+|+....||+|+ .|+.|++||...... .+.+ .....|..
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~----i~~v----------------------------dtgsQVcs 392 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR----IDSV----------------------------DTGSQVCS 392 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE----eccc----------------------------ccCCceee
Confidence 9999999999999999984 499999998754211 1110 11236889
Q ss_pred EEEccCCCceEEEE--cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 259 FTFSPHWRHIIFVT--FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~--~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
+.|||..+.++++- .++.|.||+..+-..+..+. +|...+..++.+|||..|++|+.|.|+++|+.=
T Consensus 393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99999998888875 46789999999987777665 445778899999999999999999999999874
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=5.8e-20 Score=208.31 Aligned_cols=247 Identities=15% Similarity=0.194 Sum_probs=185.3
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-E---------EEEeeecCCCeEEEEEc
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-V---------TASFSVHNGTVRGLRWL 568 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-~---------~~~l~gH~~~V~~l~fs 568 (1342)
-|.+.|..++.-|. +-.+||+++..+.|.|||.+.-. . -..|.||+..-.+|.|+
T Consensus 122 ~h~gEVnRaRymPQ---------------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQ---------------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred cCCccchhhhhCCC---------------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc
Confidence 37889999998872 45799999999999999986321 1 12688999888899998
Q ss_pred CC--CcEEEEecCCcccccCcccCEEEEEEcCCCc-----eeeeEEeccCCCCCeEEEEEcCC-CCEEEEEECCCCEEEE
Q 000703 569 GN--SRLVSFSYSQVNEKSGGYINRLVVTCLRSGI-----NRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVW 640 (1342)
Q Consensus 569 ~d--~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~-----~~~l~~l~g~h~~~I~~i~~Spd-g~~Las~s~D~tIkvW 640 (1342)
+. +.+++.+. +++|.+||+.... ..+...+.+ |+..|+.++|++. ...+++++.|+.+.||
T Consensus 187 ~~~~g~Lls~~~----------d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 187 RQQEGTLLSGSD----------DHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred cccceeEeeccC----------CCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecCCCeEEEE
Confidence 75 46665443 4589999995422 122333344 8888888888875 4566788888888888
Q ss_pred eccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE
Q 000703 641 AMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1342)
Q Consensus 641 Dl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l 720 (1342)
|+ |++ +.+ |.
T Consensus 256 D~-R~~----~~~---------~~-------------------------------------------------------- 265 (422)
T KOG0264|consen 256 DT-RSN----TSK---------PS-------------------------------------------------------- 265 (422)
T ss_pred Ec-CCC----CCC---------Cc--------------------------------------------------------
Confidence 88 442 000 00
Q ss_pred EEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCC--ceeeeccccc
Q 000703 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTG--HSSQFSTHRE 795 (1342)
Q Consensus 721 a~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~DgtI~lWDl~tg--~~~~l~~H~~ 795 (1342)
.. -.+|.+.|+|++| ++..||+||.|++|.+||++.- .++++.+|+.
T Consensus 266 -----------------~~-----------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d 317 (422)
T KOG0264|consen 266 -----------------HS-----------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED 317 (422)
T ss_pred -----------------cc-----------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc
Confidence 00 0036677889988 7789999999999999999874 3789999999
Q ss_pred cEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcc-------------cccccCCCCCCCcEEEEEEeCCCCCCC
Q 000703 796 GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL-------------ANSLLQPQFPGTLVLELDWLPTRTDKN 862 (1342)
Q Consensus 796 ~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l-------------~~~l~~gh~~~~~V~~l~ws~d~~~~g 862 (1342)
.|.+|.|||... ..||+++.|+++.|||+..-..- .-.. -||. ..|.+++|+|.
T Consensus 318 ev~~V~WSPh~e-----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H-gGH~--~kV~DfsWnp~----- 384 (422)
T KOG0264|consen 318 EVFQVEWSPHNE-----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH-GGHT--AKVSDFSWNPN----- 384 (422)
T ss_pred ceEEEEeCCCCC-----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe-cCcc--cccccccCCCC-----
Confidence 999999999843 57899999999999999643211 0111 2454 77999999997
Q ss_pred CCeEEEEEeCCCcEEEEEcc
Q 000703 863 DPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 863 ~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+|..|+|++.|+.+.||++.
T Consensus 385 ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCeEEEEecCCceEEEeecc
Confidence 89999999999999999986
No 103
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-20 Score=194.85 Aligned_cols=238 Identities=15% Similarity=0.215 Sum_probs=184.6
Q ss_pred CCceEeCCCC---eEEEEcCCeEEEEeCC-CcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 27 FGSADLSPSG---LLAFASGSSISILDSR-SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 27 ~~a~~~s~~g---llA~gs~~~V~v~d~~-s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
+--++||++- ++|...+++++|||.. ....++.++.|+. .|.+|.|.+- ++.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----------EV~Svdwn~~-------------~r~ 118 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----------EVYSVDWNTV-------------RRR 118 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhh-----------heEEeccccc-------------cce
Confidence 4468999864 4555567899999953 3457999999998 9999999985 356
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCce
Q 000703 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYL 182 (1342)
Q Consensus 103 ~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v 182 (1342)
.+++++.||+|+|||..-+..+++| .||.. -|...+|+|..+ .+++++++|++++|||++...+...+..|...+
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf--~gh~~-~Iy~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei 193 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTF--NGHNS-CIYQAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI 193 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEee--cCCcc-EEEEEecCCCCC--CeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence 7777899999999999888888886 78877 899999999874 899999999999999998543333477777789
Q ss_pred EEEEecCCCCCEEEEEeCCCeEEEEEecC-CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 183 SCIRRNPFDARHFCVLGLKGLLLSVRVLG-QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 183 ~~v~fsP~d~~~la~~s~dG~v~~~d~~~-~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
.|+.|+.||.+.|++++.|+.|+.||++. +.| +..|. ++...|.++.|
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----------------l~eL~---------------gh~~AVRkvk~ 242 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----------------LFELN---------------GHGLAVRKVKF 242 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccc----------------ceeec---------------CCceEEEEEec
Confidence 99999999999999999999999999755 111 11111 23335888999
Q ss_pred ccCCCc-eEEEEcCCeEEEEEccCCce-eEEEecCCCccceEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 000703 262 SPHWRH-IIFVTFPRELVVFDLQYETP-LFSAALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 262 Spdg~~-ll~~~~d~~I~iwDl~t~~~-l~~~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~ 326 (1342)
||.... |+++++|-+++|||.+.+.. +.+.. ++..-+..+-+++ ++.++++.+-|+.+.||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 998754 56778999999999996543 33332 2233333444443 6779999999999999984
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-18 Score=177.93 Aligned_cols=246 Identities=21% Similarity=0.348 Sum_probs=187.0
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE-----EEEeeecCCCeEEEEEcCC----
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV-----TASFSVHNGTVRGLRWLGN---- 570 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~-----~~~l~gH~~~V~~l~fs~d---- 570 (1342)
|.+.|+|.+|+| .|.++|+|++|.+|++.-.....+ ..+|.-|.+.|+.++|..+
T Consensus 88 hkgsiyc~~ws~----------------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 88 HKGSIYCTAWSP----------------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred cCccEEEEEecC----------------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence 778999999999 699999999999999976643322 3478899999999999543
Q ss_pred CcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceee
Q 000703 571 SRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR 650 (1342)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~ 650 (1342)
++++..+ |.-|-.|.+.|-.+|+ .+..+.| |.+-|.++ ++-.|-.+++|+.|.+|+.||+ +-..+++
T Consensus 152 ~~il~s~--------gagdc~iy~tdc~~g~--~~~a~sg-htghilal-yswn~~m~~sgsqdktirfwdl-rv~~~v~ 218 (350)
T KOG0641|consen 152 GAILASA--------GAGDCKIYITDCGRGQ--GFHALSG-HTGHILAL-YSWNGAMFASGSQDKTIRFWDL-RVNSCVN 218 (350)
T ss_pred ceEEEec--------CCCcceEEEeecCCCC--cceeecC-CcccEEEE-EEecCcEEEccCCCceEEEEee-eccceee
Confidence 4555432 2335689999998888 7888777 88888765 4567899999999999999999 6666665
Q ss_pred eccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEE
Q 000703 651 SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1342)
Q Consensus 651 ~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~ 730 (1342)
++...+ . + |
T Consensus 219 ~l~~~~-----~-~--------------------------------------------------------------~--- 227 (350)
T KOG0641|consen 219 TLDNDF-----H-D--------------------------------------------------------------G--- 227 (350)
T ss_pred eccCcc-----c-C--------------------------------------------------------------C---
Confidence 543111 0 0 0
Q ss_pred EEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCC
Q 000703 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVP 807 (1342)
Q Consensus 731 lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~ 807 (1342)
.+ ....|.+++. .|++|++|-.|....++|++.++ +..|.-|...|++|+|||..
T Consensus 228 -------gl--------------essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a- 285 (350)
T KOG0641|consen 228 -------GL--------------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA- 285 (350)
T ss_pred -------Cc--------------ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-
Confidence 00 0012445555 78999999999999999999988 67888999999999999983
Q ss_pred CCCCCCEEEEEECCCeEEEEECCCCCcccccc----cCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 808 GDRSRGRIAVLFHDNTFSVFDLDSQDPLANSL----LQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 808 g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l----~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
-+|+++++|..|++=|+... +...| ...|. ..+..+.|+|. .+.+++.+.|.++.+|.++
T Consensus 286 -----~yllt~syd~~ikltdlqgd--la~el~~~vv~ehk--dk~i~~rwh~~------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 286 -----HYLLTCSYDMKIKLTDLQGD--LAHELPIMVVAEHK--DKAIQCRWHPQ------DFSFISSSADKTATLWALN 349 (350)
T ss_pred -----eEEEEecccceEEEeecccc--hhhcCceEEEEecc--CceEEEEecCc------cceeeeccCcceEEEeccC
Confidence 57999999999999998653 22222 12333 56888999996 3357799999999999764
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.7e-19 Score=205.49 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=196.1
Q ss_pred CCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 27 FGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
+-+++|=.|| |+|.|. .+.|.|+|..+...+.+|.+|+. +|..++|+|++ ++.|
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----------pv~~~~f~~~d-------------~t~l 126 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-----------PVHVTKFSPQD-------------NTML 126 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC-----------ceeEEEecccC-------------CeEE
Confidence 5578998899 777775 47999999777777889999998 99999999985 6899
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC-eEEEEEeCCCCceE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SCMWKYDASPEYLS 183 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~i~~~~~~~~~v~ 183 (1342)
++|++|+.+++||+.++..+. ++.+|+. -|.+.+|+|-.+ .+++||+.||.|++||+++- ..+.++.. ..+|.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~--~l~~htD-YVR~g~~~~~~~--hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe 200 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQA--ELSGHTD-YVRCGDISPAND--HIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVE 200 (487)
T ss_pred EecCCCceEEEEEcCCcEEEE--EecCCcc-eeEeeccccCCC--eEEEecCCCceEEEEEeccCCceeEEecC-CCcee
Confidence 999999999999999988633 4689999 899999999752 79999999999999999876 45555543 57999
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc
Q 000703 184 CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP 263 (1342)
Q Consensus 184 ~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSp 263 (1342)
.+-|=| .+..++++|. ..|++||+.+.. +.. -.. ..|.-.|.+++|..
T Consensus 201 ~vl~lp-sgs~iasAgG-n~vkVWDl~~G~------qll---------~~~---------------~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 201 SVLALP-SGSLIASAGG-NSVKVWDLTTGG------QLL---------TSM---------------FNHNKTVTCLRLAS 248 (487)
T ss_pred eEEEcC-CCCEEEEcCC-CeEEEEEecCCc------eeh---------hhh---------------hcccceEEEEEeec
Confidence 999999 7889988874 689999986421 111 001 11334578889999
Q ss_pred CCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 000703 264 HWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 264 dg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1342)
++..|++++.||.|+|||+.+-+.+..+..+ +|++++..+||++.++.|-.||.+.+.++..+
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 9999999999999999998888888777544 78999999999999999999999999866543
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=2.7e-19 Score=210.46 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=172.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEE
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1342)
++.++++|++|++|.+|...+......|.||...|.++.-..++.++|.| +|.++++|-. |+ +...
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgS----------WD~TakvW~~--~~--l~~~ 135 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGS----------WDSTAKVWRI--GE--LVYS 135 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecc----------cccceEEecc--hh--hhcc
Confidence 45578899999999999999999999999999999999987777778644 5569999965 44 3334
Q ss_pred eccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc---eEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 608 l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~---vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
+++ |..+|.++.+-|++ .+++|+.|++||+|. .+++++++.++ |.+++.-++
T Consensus 136 l~g-H~asVWAv~~l~e~-~~vTgsaDKtIklWk---~~~~l~tf~gHtD~VRgL~vl~~-------------------- 190 (745)
T KOG0301|consen 136 LQG-HTASVWAVASLPEN-TYVTGSADKTIKLWK---GGTLLKTFSGHTDCVRGLAVLDD-------------------- 190 (745)
T ss_pred cCC-cchheeeeeecCCC-cEEeccCcceeeecc---CCchhhhhccchhheeeeEEecC--------------------
Confidence 566 99999999999988 788999999999995 46788888743 345554322
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~- 763 (1342)
..|++++.||.|++|+++|..+..+ .||..-|.+++.
T Consensus 191 ---------------------------------~~flScsNDg~Ir~w~~~ge~l~~~---------~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 191 ---------------------------------SHFLSCSNDGSIRLWDLDGEVLLEM---------HGHTNFVYSISMA 228 (745)
T ss_pred ---------------------------------CCeEeecCCceEEEEeccCceeeee---------eccceEEEEEEec
Confidence 3589999999999999999888642 278888888884
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCceee-eccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC
Q 000703 764 -RLPHVVMGDRSGNIRWWDVTTGHSSQ-FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~~~~-l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~ 830 (1342)
+++.+++++.|+++++|+.. .+.+ +.-.+..|+++.+-++ +.|++++.||.||||..+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-------gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-------GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-------CCEEEeccCceEEEEEec
Confidence 88899999999999999976 4433 3333448999999888 579999999999999776
No 107
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-17 Score=192.05 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=162.9
Q ss_pred eEEEEc---CCeEEEEeCC----CcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeC
Q 000703 37 LLAFAS---GSSISILDSR----SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1342)
Q Consensus 37 llA~gs---~~~V~v~d~~----s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1342)
++||-. ++.+-|.-.. .-+.+..|.+|.+ .|+-+.|||-. ..+||+|+.
T Consensus 45 flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d-----------~VtDl~FspF~-------------D~LLAT~S~ 100 (1012)
T KOG1445|consen 45 FLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGD-----------QVTDLGFSPFA-------------DELLATCSR 100 (1012)
T ss_pred eEEEeecCCCceEEEEeccccCccccccceeecccc-----------eeeccCccccc-------------hhhhhcccC
Confidence 677743 4455554332 2234667889998 99999999963 468999999
Q ss_pred CCcEEEEeCCCCeEEEEec----CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000703 110 HGRVALLDFRLRSVVLWID----PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCI 185 (1342)
Q Consensus 110 dG~V~vWD~~~g~~~~~l~----~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v 185 (1342)
|..|+||.+..|-.. .+. .-+|....|.++.|.|..+ .+|+++. -+++.|||+.|++.+..+.+|.+.|.+.
T Consensus 101 D~~VKiW~lp~g~~q-~LSape~~~g~~~~~vE~l~fHpTaD--gil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa 176 (1012)
T KOG1445|consen 101 DEPVKIWKLPRGHSQ-KLSAPEIDVGGGNVIVECLRFHPTAD--GILASGA-HGSVYITDISTQKTAVELSGHTDKVQSA 176 (1012)
T ss_pred CCeeEEEecCCCccc-ccCCcceeecCCceEEEEeecccCcC--ceEEecc-CceEEEEEcccCceeecccCCchhhhcc
Confidence 999999999754321 111 1245555889999999863 4666654 6899999999999999999999999999
Q ss_pred EecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 186 ~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
.|+- |+..|++.+.|..|+++|...... .++..+.|. ...-.++.|.-++
T Consensus 177 ~Wse-DG~llatscKdkqirifDPRa~~~---------------piQ~te~H~--------------~~rdsRv~w~Gn~ 226 (1012)
T KOG1445|consen 177 DWSE-DGKLLATSCKDKQIRIFDPRASME---------------PIQTTEGHG--------------GMRDSRVLWAGNW 226 (1012)
T ss_pred cccc-CCceEeeecCCcceEEeCCccCCC---------------ccccccccc--------------cchhheeeeccch
Confidence 9998 999999999999999998654211 111122211 0112356788888
Q ss_pred CceEEEEcC----CeEEEEEcc-CCceeEEEecCCCccceEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 000703 266 RHIIFVTFP----RELVVFDLQ-YETPLFSAALPRGCAKFLDVLADPNNDLLYCAH-LDGKLSIWRRK 327 (1342)
Q Consensus 266 ~~ll~~~~d----~~I~iwDl~-t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~-~DgtI~lW~~~ 327 (1342)
.+|++.+++ ++|++||.. -+..++++.+....+ ++-=.+.||.++|+-++ .+.+|....+.
T Consensus 227 ~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stG-vLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 227 ERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTG-VLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred hhhhhcccchhhheeeeeeeccccCCcceeEEeecccc-eEeeeecCCCceEEEecCCcceEEEEEec
Confidence 899999875 689999986 466677776653322 33234578888766544 45566655554
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=1.8e-17 Score=190.47 Aligned_cols=191 Identities=6% Similarity=0.075 Sum_probs=137.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1342)
..++|++.||+|++||..+++.+..+. .+ . .+..++|+|++. .++++++.++.|++||+.+++.+..+..+ ..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~-~~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~ 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VG-Q-RPRGITLSKDGK--LLYVCASDSDTIQVIDLATGEVIGTLPSG-PD 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CC-C-CCCceEECCCCC--EEEEEECCCCeEEEEECCCCcEEEeccCC-CC
Confidence 468999999999999999999888764 33 3 467799999871 34466778899999999999887666553 33
Q ss_pred eEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 182 LSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
+..++|+| |++.+++. +.++.+++||+..... ...+. .......++
T Consensus 75 ~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~----~~~~~----------------------------~~~~~~~~~ 121 (300)
T TIGR03866 75 PELFALHP-NGKILYIANEDDNLVTVIDIETRKV----LAEIP----------------------------VGVEPEGMA 121 (300)
T ss_pred ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeE----EeEee----------------------------CCCCcceEE
Confidence 56789999 77777655 5689999999754210 11110 001134569
Q ss_pred EccCCCceEEEEcCC-eEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEE-EeCCCcEEEEEccCCceeeeE
Q 000703 261 FSPHWRHIIFVTFPR-ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~-~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
|+|||+.++++..++ .+.+||+++++.+..+... .....+.++|||+.|+. +..|+.|++||.++++.+..+
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 999999998888764 5778899988776554322 22345778999998864 456999999999988654443
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=195.24 Aligned_cols=274 Identities=14% Similarity=0.243 Sum_probs=207.4
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEE-EEecCC
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLV-SFSYSQ 580 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~ll-S~s~d~ 580 (1342)
..++++..+| ..+.+.+|+.|.++.++|..+++.+..|.||+..|+.+.|+++...+ +.+.
T Consensus 220 pgi~ald~~~----------------s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa-- 281 (506)
T KOG0289|consen 220 PGITALDIIP----------------SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA-- 281 (506)
T ss_pred CCeeEEeecC----------------CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC--
Confidence 3567777766 24678999999999999999999999999999999999999987544 3333
Q ss_pred cccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC-----c
Q 000703 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL-----P 655 (1342)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~-----~ 655 (1342)
+..|+||......... ..+ +|+.+|+.+..+|.|.||++++.|++.-..|+ +++.++..... .
T Consensus 282 --------d~~i~vws~~~~s~~~--~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~-~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 282 --------DEIIRVWSVPLSSEPT--SSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI-SSGSQLTVVSDETSDVE 349 (506)
T ss_pred --------cceEEeeccccccCcc--ccc-cccccceeeeeccCCcEEEEecCCceEEEEEc-cCCcEEEEEeeccccce
Confidence 3489999986554222 222 48999999999999999999999999999999 78877654332 2
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
+++.+|+|| +-.|+++..||.|++||+.
T Consensus 350 ~ts~~fHpD----------------------------------------------------gLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 350 YTSAAFHPD----------------------------------------------------GLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred eEEeeEcCC----------------------------------------------------ceEEeccCCCceEEEEEcC
Confidence 567777766 3567889999999999996
Q ss_pred CCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeec-cccccEEEEEEecCCCCCCC
Q 000703 736 GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFS-THREGIRRIKFSPVVPGDRS 811 (1342)
Q Consensus 736 g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~-~H~~~V~~v~fSPd~~g~~~ 811 (1342)
.... ..+|| +|.+.|.+|+| +|-+||++..|+.|++||++.-+ ..++. .-...|.++.|.+. |
T Consensus 378 s~~~---~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S--G--- 444 (506)
T KOG0289|consen 378 SQTN---VAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS--G--- 444 (506)
T ss_pred Cccc---cccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC--C---
Confidence 4432 13344 68899999999 89999999999999999998754 44442 12237999999887 5
Q ss_pred CCEEEEEECCCeEEEEECCCCC--cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEc
Q 000703 812 RGRIAVLFHDNTFSVFDLDSQD--PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1342)
Q Consensus 812 ~~~Las~s~DgtI~IWDl~t~~--~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi 881 (1342)
++|+.++.|=.|.+++-.+.. ++. .+ .-|. +....+.|... .. +|+++|.|..+|++.+
T Consensus 445 -t~L~~~g~~l~Vy~~~k~~k~W~~~~-~~-~~~s--g~st~v~Fg~~-----aq-~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 445 -TYLGIAGSDLQVYICKKKTKSWTEIK-EL-ADHS--GLSTGVRFGEH-----AQ-YLASTSMDAILRLYAL 505 (506)
T ss_pred -CeEEeecceeEEEEEecccccceeee-hh-hhcc--cccceeeeccc-----ce-EEeeccchhheEEeec
Confidence 789888777666666643332 221 11 2232 46777888764 32 7899999999999864
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=2.9e-19 Score=203.49 Aligned_cols=260 Identities=18% Similarity=0.200 Sum_probs=186.2
Q ss_pred CcEEEEeeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCC--CceeeeEEeccCCCCCeEEEEEcCCC
Q 000703 549 NAVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVLQKPERAPIRALRASSSG 625 (1342)
Q Consensus 549 g~~~~~l~gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l~g~h~~~I~~i~~Spdg 625 (1342)
+.....|.+|+..|.++++.|.| ||++ |++|++|++||+.. ...+.++.++..+..+|++++||+.|
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~s----------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVS----------GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeee----------ccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 44556788999999999999887 7775 55667999999953 23346777776677899999999999
Q ss_pred CEEEEEECCCCEEEEeccCCcceeeec-c------------Cc---eEEEEEcCCCCCCCCCCCCCCccccccCCCCCcc
Q 000703 626 RYLLILFRDAPVEVWAMTKNPIMLRSL-A------------LP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADT 689 (1342)
Q Consensus 626 ~~Las~s~D~tIkvWDl~kt~~~l~~l-~------------~~---vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~ 689 (1342)
..|++.+.....+|+|- .|..+-++ + ++ +++.+|+|.
T Consensus 227 ~~iLvvsg~aqakl~DR--dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~------------------------- 279 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDR--DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD------------------------- 279 (641)
T ss_pred CeEEEEecCcceeEEcc--CCceeeeeeccchhhhhhhccCCceeeeeccccccC-------------------------
Confidence 99999999999999994 44332221 1 12 355667654
Q ss_pred CCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCe--eeccCCCCCCCccccccceEEEEee--cC
Q 000703 690 TDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR--IRDFRPKWPSSSFISSDGLITAMAY--RL 765 (1342)
Q Consensus 690 ~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~--v~d~~~~~~~~~~~~~~~~V~~va~--dg 765 (1342)
..+.|.+++.||++++|+++..+ ..-++++..+ +.--.++..+| ||
T Consensus 280 --------------------------~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~----g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 280 --------------------------NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG----GKRVPVTSCAWNRDG 329 (641)
T ss_pred --------------------------cccceEEecCCCcEEEEecCCchhheeEEeeccCC----CcccCceeeecCCCc
Confidence 14678999999999999995322 1112222221 22234677888 99
Q ss_pred CEEEEEeCCCcEEEEECCCCcee----eeccccc--cEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccc
Q 000703 766 PHVVMGDRSGNIRWWDVTTGHSS----QFSTHRE--GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSL 839 (1342)
Q Consensus 766 ~~LasGs~DgtI~lWDl~tg~~~----~l~~H~~--~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l 839 (1342)
++||+|..||.|.+||......+ .-..|.. .|++|.||++ | ++|++=+.|+++++|||+.........
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d--g----~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD--G----NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc--c----chhhhccCCCceeeeeccccccchhhh
Confidence 99999999999999998654322 2267877 9999999999 6 789999999999999999876433322
Q ss_pred cCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeC------CCcEEEEEccCCcccc
Q 000703 840 LQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA------DSSFRLIEVNTSEKKI 888 (1342)
Q Consensus 840 ~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~------DgtIrvWdi~~~~~~~ 888 (1342)
.+......-+++.|+|+ +. +|++|.. -|++.+||..+-....
T Consensus 404 -tgL~t~~~~tdc~FSPd-----~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 404 -TGLPTPFPGTDCCFSPD-----DK-LILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred -cCCCccCCCCccccCCC-----ce-EEEecccccCCCCCceEEEEeccceeeEE
Confidence 23222244578999998 44 4666643 5678888866544443
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=2.7e-18 Score=195.61 Aligned_cols=216 Identities=14% Similarity=0.147 Sum_probs=157.5
Q ss_pred eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEecCCCC
Q 000703 57 ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS----VVLWIDPDPN 132 (1342)
Q Consensus 57 ~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~----~~~~l~~~~h 132 (1342)
-..|++|+. .|+++++-|. |.+|+||+-|-+|++||+..-. ..+.+ .+..
T Consensus 160 Ei~l~hgtk-----------~Vsal~~Dp~--------------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~E 213 (641)
T KOG0772|consen 160 EIQLKHGTK-----------IVSALAVDPS--------------GARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPCE 213 (641)
T ss_pred eEeccCCce-----------EEEEeeecCC--------------CceeeeccccceEEEEecccccccchhhhcc-Cccc
Confidence 346888988 8999998764 7899999999999999996432 22222 1222
Q ss_pred CCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE-------------EEEeCCCCceEEEEecCCCCCEEEEEe
Q 000703 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM-------------WKYDASPEYLSCIRRNPFDARHFCVLG 199 (1342)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i-------------~~~~~~~~~v~~v~fsP~d~~~la~~s 199 (1342)
.. .|+.++|++.+ ..+++.++....+|.|-+ |..+ ....+|.-.++|.+|.|+....|.+++
T Consensus 214 ~h-~i~sl~ys~Tg---~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 214 TH-QINSLQYSVTG---DQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred cc-ccceeeecCCC---CeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 33 89999999987 566667778889999974 4322 223456667899999999999999999
Q ss_pred CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEE
Q 000703 200 LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVV 279 (1342)
Q Consensus 200 ~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~i 279 (1342)
.||++++||+..... ..++ |.+ ++ .......+..|+|+|||+.++.+..||.|.+
T Consensus 289 ~DgtlRiWdv~~~k~----q~qV-ik~-------------------k~-~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKS----QLQV-IKT-------------------KP-AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI 343 (641)
T ss_pred CCCcEEEEecCCchh----heeE-Eee-------------------cc-CCCcccCceeeecCCCcchhhhcccCCceee
Confidence 999999999755211 1111 000 01 1123345678899999999999999999999
Q ss_pred EEccCCce---eEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 280 FDLQYETP---LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 280 wDl~t~~~---l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
||...... ...-..|.....+.++.|++||++|+|=+.|+++++||++.
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 99743221 11112243445788999999999999999999999999874
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-17 Score=180.42 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=201.7
Q ss_pred cEEEEeCCCCeEEEEec---CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC-----eEEE-EEeCCCCce
Q 000703 112 RVALLDFRLRSVVLWID---PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-----SCMW-KYDASPEYL 182 (1342)
Q Consensus 112 ~V~vWD~~~g~~~~~l~---~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-----~~i~-~~~~~~~~v 182 (1342)
++.-|+.......+.+. ++||.+ .|++++|+.|| +.||++++|++|+||+++.= +++. ++.+ +..
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~-~vt~~~FsSdG---K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhp 135 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKK-EVTDVAFSSDG---KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHP 135 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCC-ceeeeEEcCCC---ceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCc
Confidence 46678877666555442 479998 99999999988 89999999999999999742 1221 1222 345
Q ss_pred EEEEecCCCCCEEEEEeCCC-eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 183 SCIRRNPFDARHFCVLGLKG-LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 183 ~~v~fsP~d~~~la~~s~dG-~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
+.++|.| |.+-+++....| .++++.+.- + ++
T Consensus 136 T~V~Fap-Dc~s~vv~~~~g~~l~vyk~~K---------~----~d---------------------------------- 167 (420)
T KOG2096|consen 136 TRVVFAP-DCKSVVVSVKRGNKLCVYKLVK---------K----TD---------------------------------- 167 (420)
T ss_pred eEEEECC-CcceEEEEEccCCEEEEEEeee---------c----cc----------------------------------
Confidence 6778888 766665554433 344432210 0 00
Q ss_pred ccCCCceEEEEcCCeEEEEE-ccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 000703 262 SPHWRHIIFVTFPRELVVFD-LQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEE 340 (1342)
Q Consensus 262 Spdg~~ll~~~~d~~I~iwD-l~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1342)
| +..-...=|| ++-.+ .+...++++-..-++.+|+++++|.+|.||+.+ |..+..+ +.
T Consensus 168 ---G------~~~~~~v~~D~~~f~~--------kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i---dt 226 (420)
T KOG2096|consen 168 ---G------SGSHHFVHIDNLEFER--------KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI---DT 226 (420)
T ss_pred ---C------CCCcccccccccccch--------hcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee---cc
Confidence 0 0000000122 11000 123444454444567799999999999999998 6543332 11
Q ss_pred ccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccc
Q 000703 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1342)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~ 420 (1342)
. +. .-..++++++|+.+|+.+.--.|++|++--
T Consensus 227 n-------------------q~----------------------------~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 227 N-------------------QS----------------------------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred c-------------------cc----------------------------cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 0 00 001123334478999999999999998643
Q ss_pred ccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeecccc
Q 000703 421 EGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQIL 500 (1342)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~ 500 (1342)
.+ .|+- +++.--| +|.||
T Consensus 260 ~k----------------------dG~f------------------------------------qev~rvf----~LkGH 277 (420)
T KOG2096|consen 260 TK----------------------DGTF------------------------------------QEVKRVF----SLKGH 277 (420)
T ss_pred cc----------------------Ccch------------------------------------hhhhhhh----eeccc
Confidence 22 1110 0111112 24569
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC----C---cEEEEee--ec--CCCeEEEEEcC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA----N---AVTASFS--VH--NGTVRGLRWLG 569 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t----g---~~~~~l~--gH--~~~V~~l~fs~ 569 (1342)
.+.|++++|+| +...+++.+.||++||||..- + ..+++.. -| .+.-..++.+|
T Consensus 278 ~saV~~~aFsn----------------~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 278 QSAVLAAAFSN----------------SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred hhheeeeeeCC----------------CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 99999999998 578999999999999999852 1 2233331 12 22333789999
Q ss_pred CCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEe
Q 000703 570 NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1342)
Q Consensus 570 d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWD 641 (1342)
.+..++.++.. +|+++..++|+ ..-.+...|..-|.+|.|+++|+|+++++ |+-++|.-
T Consensus 342 ~g~~lA~s~gs----------~l~~~~se~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 342 SGDSLAVSFGS----------DLKVFASEDGK--DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCcEEEeecCC----------ceEEEEcccCc--cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99888877643 79999999987 34444455889999999999999999985 67777765
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=4.2e-18 Score=192.85 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=207.9
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEE----EE------------e--eecCC
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVT----AS------------F--SVHNG 560 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~----~~------------l--~gH~~ 560 (1342)
.|..++++++++| +..++.+++.||+|.=|++.+|.-. .. . .+|..
T Consensus 140 ~H~~s~~~vals~----------------d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 140 KHQLSVTSVALSP----------------DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred cccCcceEEEeec----------------cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc
Confidence 4788999999998 5788999999999999999988732 11 1 27888
Q ss_pred CeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEE
Q 000703 561 TVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVW 640 (1342)
Q Consensus 561 ~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvW 640 (1342)
.|.+++.++|+++++ +|+.++.|+|||..|++ ++..+.+ |...|.+++|-..-..|.+++.|++|++|
T Consensus 204 eil~~avS~Dgkyla---------tgg~d~~v~Iw~~~t~e--hv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLA---------TGGRDRHVQIWDCDTLE--HVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred eeEEEEEcCCCcEEE---------ecCCCceEEEecCcccc--hhhcccc-cccceeeeeeecCccceeeeecCCceEEE
Confidence 999999999999886 45567899999999998 5666666 99999999999888899999999999999
Q ss_pred eccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE
Q 000703 641 AMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1342)
Q Consensus 641 Dl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l 720 (1342)
++ .....+.++-++-..+ ...+ .-..+.+
T Consensus 272 ~~-~~~s~vetlyGHqd~v-~~Id-------------------------------------------------aL~reR~ 300 (479)
T KOG0299|consen 272 SI-DQLSYVETLYGHQDGV-LGID-------------------------------------------------ALSRERC 300 (479)
T ss_pred eh-hHhHHHHHHhCCccce-eeec-------------------------------------------------hhcccce
Confidence 99 4555554443221111 0000 0113455
Q ss_pred EE-EecCCCEEEEEecC-CeeeccCCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc-eeee-c----
Q 000703 721 AF-ALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH-SSQF-S---- 791 (1342)
Q Consensus 721 a~-~~~DgtI~lwdv~g-~~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg~-~~~l-~---- 791 (1342)
++ +..|+++++|.+.. .++ -|.++.+++-|++| +..++++|+.||+|.+|++.+++ +.+. .
T Consensus 301 vtVGgrDrT~rlwKi~eesql----------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIPEESQL----------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred EEeccccceeEEEecccccee----------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 54 55999999999932 111 12356778999999 88999999999999999998876 3221 1
Q ss_pred -------cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCC
Q 000703 792 -------THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDP 864 (1342)
Q Consensus 792 -------~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~ 864 (1342)
.|..||++|+..|. . ..+|+++.+|.||+|-+..+-.-.+.+ ..-...+.|.++.|+++ |+.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~--s----dL~asGS~~G~vrLW~i~~g~r~i~~l-~~ls~~GfVNsl~f~~s----gk~ 439 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPG--S----DLLASGSWSGCVRLWKIEDGLRAINLL-YSLSLVGFVNSLAFSNS----GKR 439 (479)
T ss_pred cCCccccccccceeeeEeccc--C----ceEEecCCCCceEEEEecCCcccccee-eecccccEEEEEEEccC----CCE
Confidence 22349999999998 2 678999999999999998873211111 11122378999999997 553
Q ss_pred eEEEEEeCCCcEEEEEccCCcc
Q 000703 865 LVLCIAGADSSFRLIEVNTSEK 886 (1342)
Q Consensus 865 ~~L~s~s~DgtIrvWdi~~~~~ 886 (1342)
+++..|..-.+=-|-......
T Consensus 440 -ivagiGkEhRlGRW~~~k~~~ 460 (479)
T KOG0299|consen 440 -IVAGIGKEHRLGRWWCLKSGK 460 (479)
T ss_pred -EEEecccccccceeeEeeccc
Confidence 345556665554555443333
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.7e-18 Score=196.62 Aligned_cols=291 Identities=17% Similarity=0.271 Sum_probs=199.0
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC--cE
Q 000703 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS--RL 573 (1342)
Q Consensus 496 ~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~--~l 573 (1342)
.+.||++.|.+|.+.| .|.+||+|+.||+||||.+.||+|++....- +.|++|+|+|.+ .+
T Consensus 395 vyrGHtg~Vr~iSvdp----------------~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDP----------------SGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCV 457 (733)
T ss_pred eEeccCCeEEEEEecC----------------CcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCcee
Confidence 4568999999999998 5899999999999999999999999887643 489999999876 45
Q ss_pred EEEecCCc----ccccC-------------------cccCEEEEEEcCCCc--eeeeEEeccCCCCCeEEEEEcCCCCEE
Q 000703 574 VSFSYSQV----NEKSG-------------------GYINRLVVTCLRSGI--NRAFRVLQKPERAPIRALRASSSGRYL 628 (1342)
Q Consensus 574 lS~s~d~~----~~~sg-------------------~~~~~i~lwD~~tG~--~~~l~~l~g~h~~~I~~i~~Spdg~~L 628 (1342)
++++.... +...| .-+..+..|.-..-. .+-++.. -.|..+|+.+.|+.+|+||
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCceE
Confidence 55554321 00011 011234455432100 0011111 1267899999999999999
Q ss_pred EEEECC---CCEEEEeccCCcceeeec---cCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCC
Q 000703 629 LILFRD---APVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSS 702 (1342)
Q Consensus 629 as~s~D---~tIkvWDl~kt~~~l~~l---~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~ 702 (1342)
++...+ ..|-|.++. ......-| ++.+..+.|+|.
T Consensus 537 atV~~~~~~~~VliHQLS-K~~sQ~PF~kskG~vq~v~FHPs-------------------------------------- 577 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLS-KRKSQSPFRKSKGLVQRVKFHPS-------------------------------------- 577 (733)
T ss_pred EEeccCCCcceEEEEecc-cccccCchhhcCCceeEEEecCC--------------------------------------
Confidence 998654 467777773 22111111 123445566543
Q ss_pred CCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEE
Q 000703 703 DSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWW 780 (1342)
Q Consensus 703 ~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lW 780 (1342)
....+......|++||+..+.+. +...+ ...+|..|+. .|+.|+.|+.|+.+.++
T Consensus 578 ---------------~p~lfVaTq~~vRiYdL~kqelv--KkL~t------g~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 578 ---------------KPYLFVATQRSVRIYDLSKQELV--KKLLT------GSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred ---------------CceEEEEeccceEEEehhHHHHH--HHHhc------CCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 11234455678999998544331 11111 1246778887 78999999999999999
Q ss_pred ECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEE------ECCCCCcccc--cccCCCCC--CCc
Q 000703 781 DVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF------DLDSQDPLAN--SLLQPQFP--GTL 848 (1342)
Q Consensus 781 Dl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IW------Dl~t~~~l~~--~l~~gh~~--~~~ 848 (1342)
|+.-+. .+++.-|...|++|+|++.. -.+++++.||++.|+ |+-..- +.. ..+.||.. ...
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~ry------PLfas~sdDgtv~Vfhg~VY~Dl~qnp-liVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHKRY------PLFASGSDDGTVIVFHGMVYNDLLQNP-LIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcccc------ceeeeecCCCcEEEEeeeeehhhhcCC-ceEeeeeccCceeecccc
Confidence 997653 67788999999999999984 469999999999999 332221 211 12357752 245
Q ss_pred EEEEEEeCCCCCCCCCeEEEEEeCCCcEEEE
Q 000703 849 VLELDWLPTRTDKNDPLVLCIAGADSSFRLI 879 (1342)
Q Consensus 849 V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvW 879 (1342)
|+++.|+|. ++ +|.++|+||+||+|
T Consensus 708 VLd~~wHP~-----qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPR-----QP-WLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCC-----Cc-eEEecCCCceEEee
Confidence 899999997 77 58899999999999
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-18 Score=180.60 Aligned_cols=253 Identities=16% Similarity=0.282 Sum_probs=185.7
Q ss_pred eecCCCeEEEEEcCC-CcEEEEecCCcccccCcccCEEEEEEcCCCc-eeeeEEeccCCCCCeEEEEEcC--CCCEEEEE
Q 000703 556 SVHNGTVRGLRWLGN-SRLVSFSYSQVNEKSGGYINRLVVTCLRSGI-NRAFRVLQKPERAPIRALRASS--SGRYLLIL 631 (1342)
Q Consensus 556 ~gH~~~V~~l~fs~d-~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~-~~~l~~l~g~h~~~I~~i~~Sp--dg~~Las~ 631 (1342)
..|...|.++...=- .|+++++.| ++|+|+.++.+. .+.+..|.| |++||..++|-. -|.+||++
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD----------~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSD----------GTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCC----------ccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEe
Confidence 468888777665433 366766654 489999997643 467888888 999999999976 79999999
Q ss_pred ECCCCEEEEeccCCcceeeecc-----CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcC
Q 000703 632 FRDAPVEVWAMTKNPIMLRSLA-----LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKD 706 (1342)
Q Consensus 632 s~D~tIkvWDl~kt~~~l~~l~-----~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 706 (1342)
+.|+.|-||.- .+++--+.+. ..+++++|.|.
T Consensus 77 sYDgkVIiWke-~~g~w~k~~e~~~h~~SVNsV~waph------------------------------------------ 113 (299)
T KOG1332|consen 77 SYDGKVIIWKE-ENGRWTKAYEHAAHSASVNSVAWAPH------------------------------------------ 113 (299)
T ss_pred ecCceEEEEec-CCCchhhhhhhhhhcccceeeccccc------------------------------------------
Confidence 99999999997 5664322221 34677888753
Q ss_pred CCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-----cC-----------CEEEE
Q 000703 707 ASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-----RL-----------PHVVM 770 (1342)
Q Consensus 707 ~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-----dg-----------~~Las 770 (1342)
.-+-.||.++.||.|.+++.+.....+. .++. ..|.--|++++| .| +.||+
T Consensus 114 --------eygl~LacasSDG~vsvl~~~~~g~w~t-~ki~----~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 114 --------EYGLLLACASSDGKVSVLTYDSSGGWTT-SKIV----FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred --------ccceEEEEeeCCCcEEEEEEcCCCCccc-hhhh----hccccccceeeecCcCCCccccccCcccccceeec
Confidence 1135689999999999999854421111 1111 135555888888 34 56999
Q ss_pred EeCCCcEEEEECCCCc---eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCC-CcccccccCCCCCC
Q 000703 771 GDRSGNIRWWDVTTGH---SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ-DPLANSLLQPQFPG 846 (1342)
Q Consensus 771 Gs~DgtI~lWDl~tg~---~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~-~~l~~~l~~gh~~~ 846 (1342)
|+.|++|+||+...+. .++|.+|+++|+.|+|.|..+ +....||+++.||++.||..+.. ++-..+++... .
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g--l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~ 256 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG--LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--P 256 (299)
T ss_pred cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC--CCceeeEEecCCCcEEEEEecCccCcccccccccC--C
Confidence 9999999999999865 356999999999999999843 33467999999999999976632 22333443321 2
Q ss_pred CcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 847 ~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
..+..+.|+.. |. +|+.++.|+.|.+|.=....
T Consensus 257 ~~~w~vSWS~s----Gn--~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 257 DVVWRVSWSLS----GN--ILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cceEEEEEecc----cc--EEEEecCCcEEEEEEeCCCC
Confidence 56999999997 55 68999999999999866543
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.2e-18 Score=181.83 Aligned_cols=324 Identities=15% Similarity=0.172 Sum_probs=211.2
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhc
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~ 373 (1342)
.++...++.|+.......+.+++.|.+-+||.+++|.|+..+.+ +. ++|..+.|.++
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~-----------GSVNsikfh~s----------- 201 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HT-----------GSVNSIKFHNS----------- 201 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cc-----------cceeeEEeccc-----------
Confidence 34567788888776667999999999999999999998877632 11 14555555543
Q ss_pred CCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccc-cccccccccccCCcccccccccCcccccC
Q 000703 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGA-GDLQKDAIKSGMDADVIDVALCGTNTNSM 452 (1342)
Q Consensus 374 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~-~~~~~~~~~~~~~~~v~~v~~~g~~l~~~ 452 (1342)
+..++++|.|++-.||...-.-. +.. +...+++..- +. .
T Consensus 202 ---------------------------~~L~lTaSGD~taHIW~~av~~~vP~~---~a~~~hSsEe-------E~-e-- 241 (481)
T KOG0300|consen 202 ---------------------------GLLLLTASGDETAHIWKAAVNWEVPSN---NAPSDHSSEE-------EE-E-- 241 (481)
T ss_pred ---------------------------cceEEEccCCcchHHHHHhhcCcCCCC---CCCCCCCchh-------hh-h--
Confidence 56899999999999997432110 000 0000111000 00 0
Q ss_pred cCcCcceeeccccccccccCCCCCCCCCCCccccc-ceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCE
Q 000703 453 ASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADM-SFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPL 531 (1342)
Q Consensus 453 ~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~l 531 (1342)
.++...++ .. .+..-++ .++. ..-.|.||.+.|.+..|-. +|+.
T Consensus 242 ~sDe~~~d-----------~d-------~~~~sD~~tiRv-Pl~~ltgH~~vV~a~dWL~----------------gg~Q 286 (481)
T KOG0300|consen 242 HSDEHNRD-----------TD-------SSEKSDGHTIRV-PLMRLTGHRAVVSACDWLA----------------GGQQ 286 (481)
T ss_pred cccccccc-----------cc-------cccccCCceeee-eeeeeeccccceEehhhhc----------------Ccce
Confidence 00000000 00 0001111 1221 1123445888887766654 5889
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccC
Q 000703 532 VALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKP 611 (1342)
Q Consensus 532 lAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~ 611 (1342)
+++|+.|.+..+||+++|.++..|.||....+-+.-.|..+++..+.- |.+.++||++.. ...+..++|
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr---------DtTFRLWDFRea-I~sV~VFQG- 355 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR---------DTTFRLWDFREA-IQSVAVFQG- 355 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc---------CceeEeccchhh-cceeeeecc-
Confidence 999999999999999999999999999999988888888887765442 348999999843 234556777
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc-ceeeecc--CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCc
Q 000703 612 ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP-IMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKAD 688 (1342)
Q Consensus 612 h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~-~~l~~l~--~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i 688 (1342)
|...|+++.|.-| ..+++|+.|++|||||+ ++. ..+.++. .+++.++.+
T Consensus 356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdL-rNMRsplATIRtdS~~NRvavs-------------------------- 407 (481)
T KOG0300|consen 356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDL-RNMRSPLATIRTDSPANRVAVS-------------------------- 407 (481)
T ss_pred cccceeEEEEecC-CceeecCCCceEEEeee-ccccCcceeeecCCccceeEee--------------------------
Confidence 8999999999976 45889999999999999 543 1222111 122222211
Q ss_pred cCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-cC--
Q 000703 689 TTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RL-- 765 (1342)
Q Consensus 689 ~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-dg-- 765 (1342)
.....+|.--.+..|++||++|+++.. +|-..-.+|...|+|.+| +.
T Consensus 408 --------------------------~g~~iIAiPhDNRqvRlfDlnG~RlaR----lPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 408 --------------------------KGHPIIAIPHDNRQVRLFDLNGNRLAR----LPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred --------------------------cCCceEEeccCCceEEEEecCCCcccc----CCcccccccceeeeeeeccccCc
Confidence 012345555677899999999998732 332122378889999999 22
Q ss_pred -CEEEEEeCCCcEEEEECCC
Q 000703 766 -PHVVMGDRSGNIRWWDVTT 784 (1342)
Q Consensus 766 -~~LasGs~DgtI~lWDl~t 784 (1342)
--|.+++-|..+.=|.+..
T Consensus 458 ~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccccccccceeeeeEecc
Confidence 2478899999999998865
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=6.6e-17 Score=185.78 Aligned_cols=272 Identities=10% Similarity=0.098 Sum_probs=186.9
Q ss_pred eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEE
Q 000703 37 LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115 (1342)
Q Consensus 37 llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~v 115 (1342)
+++++ .++.|.+||+.+++.++++.+|. .+..++|+|++ ..++++++.++.|++
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~------------~~~~l~~~~dg-------------~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ------------RPRGITLSKDG-------------KLLYVCASDSDTIQV 57 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC------------CCCceEECCCC-------------CEEEEEECCCCeEEE
Confidence 55555 46899999999999999998775 36679999874 223477888999999
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEE-EEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCE
Q 000703 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVL-AAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARH 194 (1342)
Q Consensus 116 WD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lL-as~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~ 194 (1342)
||..+++.+..+. .+. .+..++|+|++ +.| +++..++.|++||+.+++.+..+.. ...+.+++|+| |++.
T Consensus 58 ~d~~~~~~~~~~~--~~~--~~~~~~~~~~g---~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~ 128 (300)
T TIGR03866 58 IDLATGEVIGTLP--SGP--DPELFALHPNG---KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKI 128 (300)
T ss_pred EECCCCcEEEecc--CCC--CccEEEECCCC---CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCE
Confidence 9999998877653 332 35678999887 544 4556689999999999888776654 33467899999 9999
Q ss_pred EEEEeCCC-eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-
Q 000703 195 FCVLGLKG-LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT- 272 (1342)
Q Consensus 195 la~~s~dG-~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~- 272 (1342)
++++..++ .+++||...... ..... . . . ....++|+|||+.+++.+
T Consensus 129 l~~~~~~~~~~~~~d~~~~~~----~~~~~----------~---------------~-~--~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 129 VVNTSETTNMAHFIDTKTYEI----VDNVL----------V---------------D-Q--RPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEEEecCCCeEEEEeCCCCeE----EEEEE----------c---------------C-C--CccEEEECCCCCEEEEEcC
Confidence 98887765 455666432100 00000 0 0 0 123468999999886665
Q ss_pred cCCeEEEEEccCCceeEEEecCCC-----ccceEEEEEcCCCCEEEE-EeCCCcEEEEEccCCceeeeEeeccccccccc
Q 000703 273 FPRELVVFDLQYETPLFSAALPRG-----CAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEGEQVHVMCTMEELIPSIG 346 (1342)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~-----~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g 346 (1342)
.++.|.+||+++++.+..+..+.. ......+.++|||+.++. .+.+++|.+||.++++....+. .+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~ 248 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--------VG 248 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--------eC
Confidence 589999999999988766543211 112245778999998655 4567789999998776443220 01
Q ss_pred ccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEE-EcCCcEEEEEcccccccc
Q 000703 347 TSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISI-SDDGKVWNWLLTAEGAGD 425 (1342)
Q Consensus 347 ~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~-s~DG~v~lWdl~~~~~~~ 425 (1342)
. .+..+.++|+ |+.|+++ +.+|+|.+||+.++....
T Consensus 249 ~-----~~~~~~~~~~--------------------------------------g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 249 Q-----RVWQLAFTPD--------------------------------------EKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred C-----CcceEEECCC--------------------------------------CCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 1 2233334432 5577765 568999999999876544
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.80 E-value=2e-18 Score=195.96 Aligned_cols=248 Identities=15% Similarity=0.158 Sum_probs=186.9
Q ss_pred CCCCCCceEeCCCC--eEEEEc-CCeEEEEeCCCc----------ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCc
Q 000703 23 SRNNFGSADLSPSG--LLAFAS-GSSISILDSRSL----------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs-~~~V~v~d~~s~----------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1342)
|...|+-+-+=|+. +||+++ ++.|.|||...- ..-.+|.||+. .=+.+.|++..
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-----------eg~glsWn~~~-- 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-----------EGYGLSWNRQQ-- 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-----------ccccccccccc--
Confidence 44567888999987 788765 578999997431 11237889997 56789999874
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE-----EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEE
Q 000703 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV-----VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1342)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~-----~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1342)
--+|+||+.|++|++||+..... .....+.+|+. .|.+++|.+-.. .++++++.|+.+.||
T Consensus 190 -----------~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~--~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 190 -----------EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHE--DLFGSVGDDGKLMIW 255 (422)
T ss_pred -----------ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCc-ceehhhccccch--hhheeecCCCeEEEE
Confidence 34799999999999999965322 11222478988 999999999764 799999999999999
Q ss_pred ECCC--CeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhcccc
Q 000703 165 NTTS--ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGA 242 (1342)
Q Consensus 165 d~~t--g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s 242 (1342)
|+++ .++.....+|...|+|++|+||++..||++|.|++|.+||++.-. +. +..+
T Consensus 256 D~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------~~---------lh~~-------- 312 (422)
T KOG0264|consen 256 DTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------KP---------LHTF-------- 312 (422)
T ss_pred EcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc------cC---------ceec--------
Confidence 9994 445556678889999999999999999999999999999975411 01 1112
Q ss_pred CCCCCCCCcCccceEEEEEccCCCceEE-EEcCCeEEEEEccC-Ccee-----------EEEecCCCccceEEEEEcCCC
Q 000703 243 ASLSPASGLFPLYMVKFTFSPHWRHIIF-VTFPRELVVFDLQY-ETPL-----------FSAALPRGCAKFLDVLADPNN 309 (1342)
Q Consensus 243 ~~~~p~~~~~~~~v~~~aFSpdg~~ll~-~~~d~~I~iwDl~t-~~~l-----------~~~~l~~~~~~~~~v~~~pdg 309 (1342)
..+...|.++.|||+..+++. .+.||.+.|||+.. |+.. -.+...++...+.++.++|+.
T Consensus 313 -------e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 313 -------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred -------cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 224456899999999876654 55899999999963 2221 012223445678888899988
Q ss_pred C-EEEEEeCCCcEEEEEcc
Q 000703 310 D-LLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 310 ~-~L~s~~~DgtI~lW~~~ 327 (1342)
. .|+|+.+|+.+.||+..
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 7 67779999999999976
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=181.62 Aligned_cols=249 Identities=17% Similarity=0.208 Sum_probs=188.5
Q ss_pred cccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCc
Q 000703 12 WDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1342)
Q Consensus 12 ~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1342)
|.-...+.-+.|.....|++.+ | .+|+|+ |.+|.|+|.+....+..|-.|.+ .||+++|.|...
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-----------sitaL~F~~~~S- 96 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-----------SITALKFYPPLS- 96 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecccc-----------ceEEEEecCCcc-
Confidence 4333345556688888999995 5 788875 67999999999988999999998 899999998742
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC
Q 000703 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1342)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1342)
-..|.||+.||.|.+||+....++.++ .+|.+ .|++|+..|.+ ++.++.++|+.+++||+-+|
T Consensus 97 -----------~shLlS~sdDG~i~iw~~~~W~~~~sl--K~H~~-~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 97 -----------KSHLLSGSDDGHIIIWRVGSWELLKSL--KAHKG-QVTDLSIHPSG---KLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred -----------hhheeeecCCCcEEEEEcCCeEEeeee--ccccc-ccceeEecCCC---ceEEEEcCCceeeeehhhcC
Confidence 237999999999999999999888885 78988 89999999987 89999999999999999999
Q ss_pred eEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCC
Q 000703 170 SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPAS 249 (1342)
Q Consensus 170 ~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~ 249 (1342)
+.-..... ....+.+.|+| .+.++++.+.+ .|-+|.... ..+.+...
T Consensus 160 r~a~v~~L-~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~--------------------A~v~~~i~---------- 206 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDN--------------------ASVFREIE---------- 206 (362)
T ss_pred ccceeecc-CCcceeeEEcC-CCCEEEEEecc-EEEEEeccc--------------------HhHhhhhh----------
Confidence 86554444 23344589999 88888888764 344543211 11111110
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEE--cCCCCEEEEEeCCCcEEEEEcc
Q 000703 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLA--DPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 250 ~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~--~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
.+..++.+.|- ++..+++++.|+.|.+||..+..++..+..| ...+-++++ .|++.+|+|+|.||.|++||++
T Consensus 207 --~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 207 --NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred --ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 12234434554 4568889999999999999998887776544 345555553 6889999999999999999986
Q ss_pred CC
Q 000703 328 EG 329 (1342)
Q Consensus 328 ~g 329 (1342)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 43
No 120
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.6e-17 Score=190.27 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=127.2
Q ss_pred ccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccc
Q 000703 385 DIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAG 464 (1342)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~ 464 (1342)
+.....++.++||.. ..||.+++||.|++|.+..+..... .
T Consensus 626 Ngt~vtDl~WdPFD~--~rLAVa~ddg~i~lWr~~a~gl~e~-----------------------~-------------- 666 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDD--ERLAVATDDGQINLWRLTANGLPEN-----------------------E-------------- 666 (1012)
T ss_pred cCceeeecccCCCCh--HHeeecccCceEEEEEeccCCCCcc-----------------------c--------------
Confidence 444566778889874 4999999999999999987643210 0
Q ss_pred cccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q 000703 465 KQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVV 544 (1342)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lW 544 (1342)
+.-.+.|.+|...|++|+|+| | ...+||+++.|-||+||
T Consensus 667 --------------------------~tPe~~lt~h~eKI~slRfHP--L-------------AadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 667 --------------------------MTPEKILTIHGEKITSLRFHP--L-------------AADVLAVASYDSTIELW 705 (1012)
T ss_pred --------------------------CCcceeeecccceEEEEEecc--h-------------hhhHhhhhhccceeeee
Confidence 001123446889999999999 2 24789999999999999
Q ss_pred eCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCC
Q 000703 545 DVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSS 624 (1342)
Q Consensus 545 Dl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spd 624 (1342)
|+.++.....|.+|++.|-+++|+++|+.++.- ..|++|+|+..++++. +++.-.++-...-..|.|--|
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV---------cKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATV---------CKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeee---------ecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEec
Confidence 999999999999999999999999999766422 2356999999998863 455434433334456788899
Q ss_pred CCEEEEEECCC----CEEEEec
Q 000703 625 GRYLLILFRDA----PVEVWAM 642 (1342)
Q Consensus 625 g~~Las~s~D~----tIkvWDl 642 (1342)
|+++++.+.|+ .|.+||.
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred CcEEEEecccccchhhhhhhhh
Confidence 99998887764 5677776
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-17 Score=177.67 Aligned_cols=313 Identities=14% Similarity=0.191 Sum_probs=198.3
Q ss_pred EEEEeCCCcce-----eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC
Q 000703 46 ISILDSRSLQL-----ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL 120 (1342)
Q Consensus 46 V~v~d~~s~~~-----~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~ 120 (1342)
+.-|++..... +.+|++|.+ .|++++||.| |..|||++.|+.|+|||+++
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~-----------~vt~~~FsSd--------------GK~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKK-----------EVTDVAFSSD--------------GKKLATISGDRSIRLWDVRD 117 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCC-----------ceeeeEEcCC--------------CceeEEEeCCceEEEEecch
Confidence 44566655433 467999999 9999999976 57899999999999999976
Q ss_pred Ce-----EE-EEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCE
Q 000703 121 RS-----VV-LWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARH 194 (1342)
Q Consensus 121 g~-----~~-~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~ 194 (1342)
-. ++ ..+++ +| -+.+.|+||-. .+++++...+.|++|-.... .++ ..+...+ |
T Consensus 118 F~~~eHr~~R~nve~-dh----pT~V~FapDc~--s~vv~~~~g~~l~vyk~~K~-----~dG-~~~~~~v---~----- 176 (420)
T KOG2096|consen 118 FENKEHRCIRQNVEY-DH----PTRVVFAPDCK--SVVVSVKRGNKLCVYKLVKK-----TDG-SGSHHFV---H----- 176 (420)
T ss_pred hhhhhhhHhhccccC-CC----ceEEEECCCcc--eEEEEEccCCEEEEEEeeec-----ccC-CCCcccc---c-----
Confidence 32 12 22222 22 35678998752 57777777777777765311 122 1111111 1
Q ss_pred EEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC
Q 000703 195 FCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP 274 (1342)
Q Consensus 195 la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d 274 (1342)
|| . .++ .+ .+...++.+-....++.|++++.|
T Consensus 177 ------------~D--------~--~~f---------~~-----------------kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 177 ------------ID--------N--LEF---------ER-----------------KHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred ------------cc--------c--ccc---------ch-----------------hcccceEEEeecCCceEEEEecCC
Confidence 11 0 000 00 011234555566678899999999
Q ss_pred CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEc---cCCc---eeeeEeeccccccccccc
Q 000703 275 RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR---KEGE---QVHVMCTMEELIPSIGTS 348 (1342)
Q Consensus 275 ~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~---~~g~---~~~~~~~~~~~~~~~g~~ 348 (1342)
.+|.|||++ |+.++.+.. ....-...+.+|||++|++++----|++|.. +.|+ -.++| ...|+
T Consensus 209 t~i~lw~lk-Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-------~LkGH- 277 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-------SLKGH- 277 (420)
T ss_pred CcEEEEecC-Cceeeeecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-------eeccc-
Confidence 999999999 999887753 2344445667899999999999999999986 3343 01111 11111
Q ss_pred CCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccccccccc
Q 000703 349 VPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQK 428 (1342)
Q Consensus 349 ~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~ 428 (1342)
...|++.+|+++ .++++++|.||++++||..-.-...+
T Consensus 278 --~saV~~~aFsn~--------------------------------------S~r~vtvSkDG~wriwdtdVrY~~~q-- 315 (420)
T KOG2096|consen 278 --QSAVLAAAFSNS--------------------------------------STRAVTVSKDGKWRIWDTDVRYEAGQ-- 315 (420)
T ss_pred --hhheeeeeeCCC--------------------------------------cceeEEEecCCcEEEeeccceEecCC--
Confidence 113444444432 46899999999999999754311111
Q ss_pred ccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEE
Q 000703 429 DAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLA 508 (1342)
Q Consensus 429 ~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la 508 (1342)
. +.+ + .++.. .+..-.+..-.|.
T Consensus 316 -D------pk~----------L----------------------------------k~g~~------pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 316 -D------PKI----------L----------------------------------KEGSA------PLHAAGSEPVRLE 338 (420)
T ss_pred -C------chH----------h----------------------------------hcCCc------chhhcCCCceEEE
Confidence 0 000 0 00000 0011112233678
Q ss_pred ecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEee-ecCCCeEEEEEcCCCcEEEEecC
Q 000703 509 VPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFS-VHNGTVRGLRWLGNSRLVSFSYS 579 (1342)
Q Consensus 509 ~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~-gH~~~V~~l~fs~d~~llS~s~d 579 (1342)
+|| .|+.||.. ...+++++..++|+..-++. .|...|.+|+|+++|+++....|
T Consensus 339 lsP----------------~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 339 LSP----------------SGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred eCC----------------CCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 888 47777764 45689999999998877774 89999999999999998865554
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=185.60 Aligned_cols=257 Identities=14% Similarity=0.092 Sum_probs=205.6
Q ss_pred CCccccc-cccCCC-CCCCC---CCceEeCCC-CeEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEE
Q 000703 9 ADSWDCN-FMLPGP-PSRNN---FGSADLSPS-GLLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAV 81 (1342)
Q Consensus 9 ~~~~~~~-~~lpg~-~~~~~---~~a~~~s~~-gllA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v 81 (1342)
+|.|.|. +.-+++ +|..+ ..+++..|. ..+.+|. |..++++|..+.|.+.+|+||.. .|+.|
T Consensus 199 ~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-----------ki~~v 267 (506)
T KOG0289|consen 199 TDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK-----------KITSV 267 (506)
T ss_pred HHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcce-----------EEEEE
Confidence 4558885 333444 34333 457777776 4777765 55899999999999999999998 99999
Q ss_pred EEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeE
Q 000703 82 KWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1342)
Q Consensus 82 ~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1342)
.|+|+. ..+++++.|-.|+||.+..-..... ...|.. +|+.+.-.|.+ ++|++++.|++.
T Consensus 268 ~~~~~~--------------~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~-~V~~ls~h~tg---eYllsAs~d~~w 327 (506)
T KOG0289|consen 268 KFHKDL--------------DTVITASADEIIRVWSVPLSSEPTS--SRPHEE-PVTGLSLHPTG---EYLLSASNDGTW 327 (506)
T ss_pred Eeccch--------------hheeecCCcceEEeeccccccCccc--cccccc-cceeeeeccCC---cEEEEecCCceE
Confidence 999874 5699999999999999876665444 356777 99999999987 899999999999
Q ss_pred EEEECCCCeEEEEEeCC--CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000703 162 SLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1342)
Q Consensus 162 ~lWd~~tg~~i~~~~~~--~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1342)
.+.|.++|.++.+.... .-.+++.+|+| |+-.|.++..||.|++||+..+.. .-+
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~----~a~------------------ 384 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN----VAK------------------ 384 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc----ccc------------------
Confidence 99999999988776542 23578999999 999999999999999999865321 111
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCC
Q 000703 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1342)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1342)
..+|...|..++|+-+|-+|++++.|++|++|||..-+.+.++.++... .+.++.+...|.+|+.++.|=
T Consensus 385 ---------Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 385 ---------FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred ---------CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeeccee
Confidence 1223445888999999999999999999999999988888888887543 677888999999999998887
Q ss_pred cEEEEEccCC
Q 000703 320 KLSIWRRKEG 329 (1342)
Q Consensus 320 tI~lW~~~~g 329 (1342)
.|.+.+.++.
T Consensus 455 ~Vy~~~k~~k 464 (506)
T KOG0289|consen 455 QVYICKKKTK 464 (506)
T ss_pred EEEEEecccc
Confidence 7776665543
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.3e-18 Score=203.28 Aligned_cols=280 Identities=16% Similarity=0.216 Sum_probs=204.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc------EEEEeeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 528 AVPLVALGTQSGAVDVVDVSANA------VTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~------~~~~l~gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
.+++|.+|+.||+|++|++.... ....++.|+..|+++....++ .+||+|.|. +|++|+...+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt----------TVK~W~~~~~ 105 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT----------TVKVWNAHKD 105 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc----------eEEEeecccC
Confidence 56789999999999999985332 366788999999999998887 788888765 8999999766
Q ss_pred ceeeeEEeccCCCCCeEEEEE-cCCCCEEEEEECCCCEEEEeccCCcc--eeeeccCceEEEEEcCCCCCCCCCCCCCCc
Q 000703 601 INRAFRVLQKPERAPIRALRA-SSSGRYLLILFRDAPVEVWAMTKNPI--MLRSLALPFTVLEWTLPTVPWPSQTGPSRQ 677 (1342)
Q Consensus 601 ~~~~l~~l~g~h~~~I~~i~~-Spdg~~Las~s~D~tIkvWDl~kt~~--~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~ 677 (1342)
..-++++++. |...|.++++ -++...+|+|+-|+.|.|||+ .++. .+.++. .++.- +....++.
T Consensus 106 ~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi-n~~~~~l~~s~n-~~t~~--sl~sG~k~-------- 172 (735)
T KOG0308|consen 106 NTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDRKIFLWDI-NTGTATLVASFN-NVTVN--SLGSGPKD-------- 172 (735)
T ss_pred cchhHhhhhc-ccchheeeeecccCceeEEecCCCccEEEEEc-cCcchhhhhhcc-ccccc--cCCCCCcc--------
Confidence 4335666555 8999999999 788889999999999999999 5662 333222 11100 00000100
Q ss_pred cccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecC-CeeeccCCCCCCCccccccc
Q 000703 678 SSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDG 756 (1342)
Q Consensus 678 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g-~~v~d~~~~~~~~~~~~~~~ 756 (1342)
+ ..-....+.+..|+.|+.++-+++||... .++-. +.||..
T Consensus 173 -s----------------------------iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---------LrGHTd 214 (735)
T KOG0308|consen 173 -S----------------------------IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---------LRGHTD 214 (735)
T ss_pred -c----------------------------eeeeecCCcceEEEecCcccceEEeccccccceee---------eecccc
Confidence 0 00001113356788999999999999843 33322 237888
Q ss_pred eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 757 LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 757 ~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
.|.++-. ||..+++||+||+||+||+...+ +.++..|+..|+++.-+|+ - ..+.+|+.||.|..=|+++..
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s--f----~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS--F----THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC--c----ceEEecCCCCcEEecccCCch
Confidence 8998887 99999999999999999998877 5789999999999999998 3 679999999999999998864
Q ss_pred cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 834 PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 834 ~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
.. ++. .. ...+|..+..+-. ++++ -+++.|++|+-|.....
T Consensus 289 ~~--tli-ck-~daPv~~l~~~~~----~~~~--WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 289 KS--TLI-CK-EDAPVLKLHLHEH----DNSV--WVTTTDSSIKRWKLEPD 329 (735)
T ss_pred hh--eEe-ec-CCCchhhhhhccc----cCCc--eeeeccccceecCCccc
Confidence 22 221 11 1245666666543 3443 37889999999987643
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=9.5e-18 Score=190.05 Aligned_cols=247 Identities=17% Similarity=0.233 Sum_probs=185.8
Q ss_pred EEeeecCCCeEEEEEcCCCc-EEEEecCCcccccCcccCEEEEEEcCCCcee---------------eeEEeccCCCCCe
Q 000703 553 ASFSVHNGTVRGLRWLGNSR-LVSFSYSQVNEKSGGYINRLVVTCLRSGINR---------------AFRVLQKPERAPI 616 (1342)
Q Consensus 553 ~~l~gH~~~V~~l~fs~d~~-llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~---------------~l~~l~g~h~~~I 616 (1342)
..+..|.-+|.++.+++++. .++++. +++|.=|++.+|+.. +++.-+..|...|
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask----------~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei 205 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASK----------DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI 205 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCC----------CcceeeeehhcCcccccccccchhhhhccCCCCccccccccee
Confidence 34557999999999999874 454443 347888999888632 1111111366789
Q ss_pred EEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 617 RALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 617 ~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
.++++|+||+|||+|..|+.|.|||. .+.+.++.++. .|.+++|-.
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~------------------------------ 254 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRK------------------------------ 254 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecC-cccchhhcccccccceeeeeeec------------------------------
Confidence 99999999999999999999999999 78877776652 344555531
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG 771 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasG 771 (1342)
.+ ..+.+++.|++|++|+++...... .|-||...|.+|.. .++.+-+|
T Consensus 255 ---------------------gt-~~lys~s~Drsvkvw~~~~~s~ve--------tlyGHqd~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 255 ---------------------GT-SELYSASADRSVKVWSIDQLSYVE--------TLYGHQDGVLGIDALSRERCVTVG 304 (479)
T ss_pred ---------------------Cc-cceeeeecCCceEEEehhHhHHHH--------HHhCCccceeeechhcccceEEec
Confidence 11 236789999999999997654322 12378888888887 55566667
Q ss_pred eCCCcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCC--CC---
Q 000703 772 DRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQF--PG--- 846 (1342)
Q Consensus 772 s~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~--~~--- 846 (1342)
+.|+++++|++..-....|.+|.+.|-+++|--+ ..+++++.||+|.+|++.+.+++... ...|. +.
T Consensus 305 grDrT~rlwKi~eesqlifrg~~~sidcv~~In~-------~HfvsGSdnG~IaLWs~~KKkplf~~-~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 305 GRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-------EHFVSGSDNGSIALWSLLKKKPLFTS-RLAHGVIPELDP 376 (479)
T ss_pred cccceeEEEeccccceeeeeCCCCCeeeEEEecc-------cceeeccCCceEEEeeecccCceeEe-eccccccCCccc
Confidence 7999999999955445567899999999999887 67999999999999999998876432 23442 11
Q ss_pred ----CcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 847 ----TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 847 ----~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
.||++++-.|. .+ ++|+|+.||+||+|.+..+
T Consensus 377 ~~~~~Witsla~i~~----sd--L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPG----SD--LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccccceeeeEeccc----Cc--eEEecCCCCceEEEEecCC
Confidence 28999999996 34 6899999999999998854
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7e-18 Score=191.50 Aligned_cols=225 Identities=15% Similarity=0.270 Sum_probs=172.8
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecC
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d 579 (1342)
.+++|.+|+-+| .|.+|+.|+..|.|++|.+.+|.++..+.+|--.|++|.|+.|+..+-
T Consensus 80 ~Pg~v~al~s~n----------------~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii---- 139 (476)
T KOG0646|consen 80 LPGPVHALASSN----------------LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII---- 139 (476)
T ss_pred cccceeeeecCC----------------CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE----
Confidence 477899999877 588999888999999999999999999999999999999999985442
Q ss_pred CcccccCcccCEEEEEEc-------CCCceeeeEEeccCCCCCeEEEEEcCC--CCEEEEEECCCCEEEEeccCCcceee
Q 000703 580 QVNEKSGGYINRLVVTCL-------RSGINRAFRVLQKPERAPIRALRASSS--GRYLLILFRDAPVEVWAMTKNPIMLR 650 (1342)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~-------~tG~~~~l~~l~g~h~~~I~~i~~Spd--g~~Las~s~D~tIkvWDl~kt~~~l~ 650 (1342)
+|+.|+.|.+|++ +++..++++.+.. |.-+|+.+...+. ..+|+++|.|+++|+||+ ..+.++.
T Consensus 140 -----TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl-S~g~LLl 212 (476)
T KOG0646|consen 140 -----TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDL-SLGVLLL 212 (476)
T ss_pred -----ecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEe-ccceeeE
Confidence 2344668999986 2344567777665 8889999998875 468999999999999999 6888776
Q ss_pred eccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCC
Q 000703 651 SLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1342)
Q Consensus 651 ~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dgt 728 (1342)
++.- ++.+++..| ....+..|..+|.
T Consensus 213 ti~fp~si~av~lDp----------------------------------------------------ae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 213 TITFPSSIKAVALDP----------------------------------------------------AERVVYIGTEEGK 240 (476)
T ss_pred EEecCCcceeEEEcc----------------------------------------------------cccEEEecCCcce
Confidence 5442 234444432 2345667778888
Q ss_pred EEEEEecC---Cee----e--cc-CCCCCCCccccccc--eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccc
Q 000703 729 LGVFEVHG---RRI----R--DF-RPKWPSSSFISSDG--LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTH 793 (1342)
Q Consensus 729 I~lwdv~g---~~v----~--d~-~~~~~~~~~~~~~~--~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H 793 (1342)
|.+.++.+ .+. + +. ..++ ..|+||.+ .|+|++. ||.+|++|+.||+|.|||+.+++ ++++..-
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~--~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQI--NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred EEeeehhcCCccccccccccccccccee--eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 88776632 111 1 00 0111 13678888 8999888 99999999999999999999988 5777778
Q ss_pred cccEEEEEEecC
Q 000703 794 REGIRRIKFSPV 805 (1342)
Q Consensus 794 ~~~V~~v~fSPd 805 (1342)
+++|+-+.+.|-
T Consensus 319 kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 319 KGPVTNLQINPL 330 (476)
T ss_pred ccccceeEeecc
Confidence 899999999665
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.4e-18 Score=177.25 Aligned_cols=240 Identities=13% Similarity=0.203 Sum_probs=175.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---cEEEEeeecCCCeEEEEEcC--CCcEE-EEecCCcccccCcccCEEEEEEcCCCc
Q 000703 528 AVPLVALGTQSGAVDVVDVSAN---AVTASFSVHNGTVRGLRWLG--NSRLV-SFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg---~~~~~l~gH~~~V~~l~fs~--d~~ll-S~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1342)
+|++||+++.|++|||+.+..+ +++.+|.||+++|..++|.. -|.+| |++ ||+.+.||.-.+|+
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs----------YDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS----------YDGKVIIWKEENGR 91 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee----------cCceEEEEecCCCc
Confidence 7999999999999999998754 46789999999999999964 45444 444 45699999998886
Q ss_pred eeeeEEeccCCCCCeEEEEEcCC--CCEEEEEECCCCEEEEeccCCcc-e----eeeccCceEEEEEcCCCCCCCCCCCC
Q 000703 602 NRAFRVLQKPERAPIRALRASSS--GRYLLILFRDAPVEVWAMTKNPI-M----LRSLALPFTVLEWTLPTVPWPSQTGP 674 (1342)
Q Consensus 602 ~~~l~~l~g~h~~~I~~i~~Spd--g~~Las~s~D~tIkvWDl~kt~~-~----l~~l~~~vt~l~wsp~~~~~~~~~~~ 674 (1342)
-....... .|...|++|+|-|. |-.||.++.||.|.|.+....+. . ..-....++++.|.|...+-.+..
T Consensus 92 w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~-- 168 (299)
T KOG1332|consen 92 WTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD-- 168 (299)
T ss_pred hhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc--
Confidence 43333323 38899999999986 67899999999999999832211 1 111112468999998754422110
Q ss_pred CCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccc
Q 000703 675 SRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISS 754 (1342)
Q Consensus 675 ~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~ 754 (1342)
.........|++++.|..|++|..+...-.. ...|.+|
T Consensus 169 ------------------------------------~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~------e~~l~~H 206 (299)
T KOG1332|consen 169 ------------------------------------QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL------ERTLEGH 206 (299)
T ss_pred ------------------------------------cCcccccceeeccCCccceeeeecCCcchhh------hhhhhhc
Confidence 0000113569999999999999986532210 0124579
Q ss_pred cceEEEEee------cCCEEEEEeCCCcEEEEECCCC--c--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeE
Q 000703 755 DGLITAMAY------RLPHVVMGDRSGNIRWWDVTTG--H--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTF 824 (1342)
Q Consensus 755 ~~~V~~va~------dg~~LasGs~DgtI~lWDl~tg--~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI 824 (1342)
.+.|..+|| --.+||+++.||++.||..... . ...+......+.++.||+. | ..|++++.|+.|
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s--G----n~LaVs~GdNkv 280 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS--G----NILAVSGGDNKV 280 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc--c----cEEEEecCCcEE
Confidence 999999999 2357999999999999987632 1 2223455688999999998 5 689999999999
Q ss_pred EEEE
Q 000703 825 SVFD 828 (1342)
Q Consensus 825 ~IWD 828 (1342)
.+|-
T Consensus 281 tlwk 284 (299)
T KOG1332|consen 281 TLWK 284 (299)
T ss_pred EEEE
Confidence 9995
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-17 Score=186.40 Aligned_cols=285 Identities=12% Similarity=0.180 Sum_probs=211.8
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC--cEEEEeeecCCCeEEEEEcCCCc-EEEEec
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN--AVTASFSVHNGTVRGLRWLGNSR-LVSFSY 578 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg--~~~~~l~gH~~~V~~l~fs~d~~-llS~s~ 578 (1342)
++|++|.|+| ..++|.+++.||+++||-+... ..+..+.--..+|.+.+|.|+|. .+.++
T Consensus 214 ~~I~sv~FHp----------------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s- 276 (514)
T KOG2055|consen 214 GGITSVQFHP----------------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS- 276 (514)
T ss_pred CCceEEEecC----------------CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec-
Confidence 5799999999 5789999999999999998532 34555555678999999999986 44433
Q ss_pred CCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc--Cce
Q 000703 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPF 656 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--~~v 656 (1342)
+.+..+..||+.+++...+....+..+..++...+||++++||+.+..|-|.|-.. +++..+.+++ +.+
T Consensus 277 --------~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha-kT~eli~s~KieG~v 347 (514)
T KOG2055|consen 277 --------GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA-KTKELITSFKIEGVV 347 (514)
T ss_pred --------ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh-hhhhhhheeeeccEE
Confidence 23447889999998865565555545567889999999999999999999999998 8999988876 345
Q ss_pred EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecC
Q 000703 657 TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG 736 (1342)
Q Consensus 657 t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g 736 (1342)
..+.|+.+ ++.+...+.+|.|++||+..
T Consensus 348 ~~~~fsSd----------------------------------------------------sk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 348 SDFTFSSD----------------------------------------------------SKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred eeEEEecC----------------------------------------------------CcEEEEEcCCceEEEEecCC
Confidence 67777632 35567777899999999977
Q ss_pred CeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCC----c---eeeeccccccEEEEEEecCCCCC
Q 000703 737 RRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTG----H---SSQFSTHREGIRRIKFSPVVPGD 809 (1342)
Q Consensus 737 ~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg----~---~~~l~~H~~~V~~v~fSPd~~g~ 809 (1342)
+.+.. +|.... +--+.-.|++.+|++||+|+..|.|.|||.++- . +..+..-+..|++++|+|+ .
T Consensus 376 ~~~~~---rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d--~- 447 (514)
T KOG2055|consen 376 NSCLH---RFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD--A- 447 (514)
T ss_pred cceEE---EEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc--h-
Confidence 65521 121110 111334456679999999999999999997652 1 3455667789999999999 3
Q ss_pred CCCCEEEEEE--CCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 810 RSRGRIAVLF--HDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 810 ~~~~~Las~s--~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+.||.+| .+..+|+--+-+-. +.......-..-+.|++++|+|. +. +||.|-.+|.+.+|.+.
T Consensus 448 ---qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~----sG--~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 ---QILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPN----SG--YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---hhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCC----Cc--eEEeecCCCceeeEeec
Confidence 6666665 57889988776644 22222111112257999999996 44 68999999999999986
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.1e-17 Score=175.10 Aligned_cols=262 Identities=16% Similarity=0.229 Sum_probs=188.8
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCc
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~ 581 (1342)
..|++|.|+| .+..|++++.||++++||+.+..+...+ .|..++.+.+|.++...++
T Consensus 14 d~IS~v~f~~----------------~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~------ 70 (323)
T KOG1036|consen 14 DGISSVKFSP----------------SSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVT------ 70 (323)
T ss_pred hceeeEEEcC----------------cCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEE------
Confidence 4688999997 3456667789999999999877544333 5899999999999877774
Q ss_pred ccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc--CceEEE
Q 000703 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPFTVL 659 (1342)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--~~vt~l 659 (1342)
|+.|+.|++.|+.+|....+ +.|..+|++|.+++-...+++|++|++|++||. +.....-.+. ..|.++
T Consensus 71 ----G~~dg~vr~~Dln~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~-R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 71 ----GGLDGQVRRYDLNTGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP-RNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred ----eccCceEEEEEecCCcceee----ccCCCceEEEEeeccCCeEEEcccCccEEEEec-cccccccccccCceEEEE
Confidence 45677999999999973332 448899999999998889999999999999999 5533322222 112111
Q ss_pred EEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCee
Q 000703 660 EWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRI 739 (1342)
Q Consensus 660 ~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v 739 (1342)
. -.++.|++|..|..|.+||+.....
T Consensus 142 ~------------------------------------------------------v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 142 D------------------------------------------------------VSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred e------------------------------------------------------ccCCEEEEeecCceEEEEEcccccc
Confidence 1 1246788999999999999954332
Q ss_pred eccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-----eeeecccc---------ccEEEEEEe
Q 000703 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-----SSQFSTHR---------EGIRRIKFS 803 (1342)
Q Consensus 740 ~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-----~~~l~~H~---------~~V~~v~fS 803 (1342)
.. .+.+ ..| .-.+.||+. .+.-.|+++-||.|.+=.+.... -..|..|+ -+|.+|+|+
T Consensus 168 ~~--q~re-S~l---kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 168 PF--QRRE-SSL---KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred hh--hhcc-ccc---eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 10 0000 011 124667776 66778999999999986665542 23456665 489999999
Q ss_pred cCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEe
Q 000703 804 PVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG 871 (1342)
Q Consensus 804 Pd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s 871 (1342)
|- . +.+|+++.||.|.+||+.+.+.+. .+ |.-...|-+++|+.+ |. .||.|+
T Consensus 242 p~--~----~tfaTgGsDG~V~~Wd~~~rKrl~-q~---~~~~~SI~slsfs~d----G~--~LAia~ 293 (323)
T KOG1036|consen 242 PI--H----GTFATGGSDGIVNIWDLFNRKRLK-QL---AKYETSISSLSFSMD----GS--LLAIAS 293 (323)
T ss_pred cc--c----ceEEecCCCceEEEccCcchhhhh-hc---cCCCCceEEEEeccC----CC--eEEEEe
Confidence 98 3 689999999999999999987542 22 322356899999987 55 456654
No 129
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=194.89 Aligned_cols=246 Identities=16% Similarity=0.148 Sum_probs=176.4
Q ss_pred cCCCceEEEEcCCeEEEEEccCCce------eEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEe
Q 000703 263 PHWRHIIFVTFPRELVVFDLQYETP------LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1342)
Q Consensus 263 pdg~~ll~~~~d~~I~iwDl~t~~~------l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1342)
|.+|.+.+++.|+.|++|+...... +.. ++.|..-+.+++-|-+|+.|+|+|.|-+|++|+...+. ++|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~as--me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIAS--MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhh--hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---chh
Confidence 4466699999999999999864322 222 23344556677888999999999999999999986542 222
Q ss_pred ecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEE
Q 000703 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1342)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lW 416 (1342)
|..++. ..--|..++.- ..+...+|||+-|++|.+|
T Consensus 110 -----~stir~--H~DYVkcla~~-------------------------------------ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 110 -----MSTIRT--HKDYVKCLAYI-------------------------------------AKNNELVASGGLDRKIFLW 145 (735)
T ss_pred -----Hhhhhc--ccchheeeeec-------------------------------------ccCceeEEecCCCccEEEE
Confidence 010110 00011111110 1113489999999999999
Q ss_pred EcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeee
Q 000703 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1342)
Q Consensus 417 dl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1342)
|+.++-.... .+|.... . . . .
T Consensus 146 Din~~~~~l~---------------~s~n~~t-~-------------~---------------------------s---l 166 (735)
T KOG0308|consen 146 DINTGTATLV---------------ASFNNVT-V-------------N---------------------------S---L 166 (735)
T ss_pred EccCcchhhh---------------hhccccc-c-------------c---------------------------c---C
Confidence 9987632100 0010000 0 0 0 0
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC-cEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~-~llS 575 (1342)
-.|+..+|+++++.+ .|..+++|+..+.|++||..+++.+..|.||+..|+.|..++|| +++|
T Consensus 167 ~sG~k~siYSLA~N~----------------t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQ----------------TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred CCCCccceeeeecCC----------------cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence 125678999999987 47899999999999999999999999999999999999999988 6776
Q ss_pred EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCc
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP 646 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~ 646 (1342)
+|. |++|+|||+...+ ++.++.- |...|.++..+|+=+++.+|++|+.|-.=|+ ++.
T Consensus 231 ~sS----------DgtIrlWdLgqQr--Cl~T~~v-H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl-~n~ 287 (735)
T KOG0308|consen 231 ASS----------DGTIRLWDLGQQR--CLATYIV-HKEGVWALQSSPSFTHVYSGGRDGNIYRTDL-RNP 287 (735)
T ss_pred cCC----------CceEEeeeccccc--eeeeEEe-ccCceEEEeeCCCcceEEecCCCCcEEeccc-CCc
Confidence 555 4599999996655 6776655 7778999999999999999999999998888 553
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=6.8e-17 Score=174.71 Aligned_cols=249 Identities=16% Similarity=0.173 Sum_probs=186.3
Q ss_pred cccCCCCCCCCCCceEeCCC-C-eEEEEc-CCeEEEEeCCC-ccee-EeecCCCCCCCCCCCCCCCcEEEEEEecCCCcc
Q 000703 16 FMLPGPPSRNNFGSADLSPS-G-LLAFAS-GSSISILDSRS-LQLI-STIPIPPPTSAGSVASLSPFVTAVKWIPITLRC 90 (1342)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~-g-llA~gs-~~~V~v~d~~s-~~~~-~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~ 90 (1342)
+-+|+||. +.+.+++|||+ . +++.|+ +++|++|+++. ++.+ .....|.+ +|-+|+|+.|
T Consensus 20 ~ev~~pP~-DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-----------PvL~v~Wsdd---- 83 (347)
T KOG0647|consen 20 YEVPNPPE-DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-----------PVLDVCWSDD---- 83 (347)
T ss_pred eecCCCcc-cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC-----------CeEEEEEccC----
Confidence 35788764 57999999994 3 776776 79999999976 4443 33556777 8999999976
Q ss_pred ccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe
Q 000703 91 DLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS 170 (1342)
Q Consensus 91 ~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~ 170 (1342)
|..+++|+.|+.+++||+.+++.... ..|.+ +|..+.|.+.... ..|++++.|.+|+.||++..+
T Consensus 84 ----------gskVf~g~~Dk~~k~wDL~S~Q~~~v---~~Hd~-pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 84 ----------GSKVFSGGCDKQAKLWDLASGQVSQV---AAHDA-PVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ----------CceEEeeccCCceEEEEccCCCeeee---eeccc-ceeEEEEecCCCc-ceeEecccccceeecccCCCC
Confidence 57899999999999999999976554 45777 9999999987632 699999999999999999999
Q ss_pred EEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000703 171 CMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1342)
Q Consensus 171 ~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1342)
++.++.. ++.+.++..- -..++++..+..|.++.+..... + ..+.+ .| .
T Consensus 149 pv~t~~L-PeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~t------e---------~k~~~----------Sp--L 197 (347)
T KOG0647|consen 149 PVATLQL-PERVYAADVL---YPMAVVATAERHIAVYNLENPPT------E---------FKRIE----------SP--L 197 (347)
T ss_pred eeeeeec-cceeeehhcc---CceeEEEecCCcEEEEEcCCCcc------h---------hhhhc----------Cc--c
Confidence 9988887 7777766442 24677777788888887754211 1 11111 11 1
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEccCC--ceeEEEecCCCc-------cceEEEEEcCCCCEEEEEeCCCcE
Q 000703 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE--TPLFSAALPRGC-------AKFLDVLADPNNDLLYCAHLDGKL 321 (1342)
Q Consensus 251 ~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~--~~l~~~~l~~~~-------~~~~~v~~~pdg~~L~s~~~DgtI 321 (1342)
.. .+.+++.-+|....+.++..|.+.|..+..+ ..-.++.-||.. ..+-+++|.|.-..|+|++.||++
T Consensus 198 k~--Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 198 KW--QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred cc--eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 12 2345577788888899999999999999886 222334445532 234578888988899999999999
Q ss_pred EEEEccC
Q 000703 322 SIWRRKE 328 (1342)
Q Consensus 322 ~lW~~~~ 328 (1342)
..||...
T Consensus 276 ~FWDkda 282 (347)
T KOG0647|consen 276 SFWDKDA 282 (347)
T ss_pred EEecchh
Confidence 9999764
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=6.2e-18 Score=186.13 Aligned_cols=283 Identities=14% Similarity=0.170 Sum_probs=213.3
Q ss_pred ccCCCCCCCCCCceEeCCCC--eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccC
Q 000703 17 MLPGPPSRNNFGSADLSPSG--LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g--llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1342)
-|-| |++.|.|++=+|.. .+|+|+ |+.|+|||..+..++.+|+.|.+ .|..+.+...
T Consensus 61 ~L~g--HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-----------~V~Gi~v~~~------- 120 (433)
T KOG0268|consen 61 SLDG--HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-----------LVRGICVTQT------- 120 (433)
T ss_pred hccc--cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccC-----------ceeeEEeccc-------
Confidence 3445 88999999999987 588885 78999999999999999999999 9999999853
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 000703 94 STEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1342)
Q Consensus 94 s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1342)
.+.+++.|.+|+.|-+.- ..++++ .+ +..+.++.-.... ...||++. .|.|||...-.++.
T Consensus 121 ---------~~~tvgdDKtvK~wk~~~-~p~~ti--lg--~s~~~gIdh~~~~---~~FaTcGe--~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 121 ---------SFFTVGDDKTVKQWKIDG-PPLHTI--LG--KSVYLGIDHHRKN---SVFATCGE--QIDIWDEQRDNPVS 181 (433)
T ss_pred ---------ceEEecCCcceeeeeccC-Ccceee--ec--ccccccccccccc---ccccccCc--eeeecccccCCccc
Confidence 488999999999999754 355554 22 2246666544433 56788874 58899999888998
Q ss_pred EEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000703 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1342)
Q Consensus 174 ~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1342)
.+.-..+.|.++.|+|-....|++++.|+.|.++|.....| .+++.+.
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----l~KVi~~---------------------------- 229 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP----LKKVILT---------------------------- 229 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----cceeeee----------------------------
Confidence 88877899999999998888899999999999999866433 3433211
Q ss_pred cceEEEEEccCCCceEEEEcCCeEEEEEccCC-ceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCcee
Q 000703 254 LYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE-TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQV 332 (1342)
Q Consensus 254 ~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~-~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~ 332 (1342)
.....++|+|..-+.+++..|..++.+|...- +.+.+.. .+.+.+.+|.++|-|+-+++||-|.+|||+....+...
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred ccccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcch
Confidence 01335699998888888889999999999753 3344333 34467889999999999999999999999998766421
Q ss_pred eeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCc
Q 000703 333 HVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGK 412 (1342)
Q Consensus 333 ~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~ 412 (1342)
-+.. ..-|. .|+.+.+|.+ .+.++|||+||+
T Consensus 308 diYh--tkRMq---------~V~~Vk~S~D--------------------------------------skyi~SGSdd~n 338 (433)
T KOG0268|consen 308 DIYH--TKRMQ---------HVFCVKYSMD--------------------------------------SKYIISGSDDGN 338 (433)
T ss_pred hhhh--Hhhhh---------eeeEEEEecc--------------------------------------ccEEEecCCCcc
Confidence 1110 00111 3444444432 468999999999
Q ss_pred EEEEEcccc
Q 000703 413 VWNWLLTAE 421 (1342)
Q Consensus 413 v~lWdl~~~ 421 (1342)
|++|.....
T Consensus 339 vRlWka~As 347 (433)
T KOG0268|consen 339 VRLWKAKAS 347 (433)
T ss_pred eeeeecchh
Confidence 999987543
No 132
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.9e-16 Score=159.14 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=202.9
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.+.|..++|.| .+...++++...++++..... .. +. ...++.... +...+.++ ...+.+.+..
T Consensus 32 sqairav~fhp-~g~lyavgsnskt~ric~yp~-l~-~~-r~~hea~~~-pp~v~~kr------------~khhkgsiyc 94 (350)
T KOG0641|consen 32 SQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPA-LI-DL-RHAHEAAKQ-PPSVLCKR------------NKHHKGSIYC 94 (350)
T ss_pred hhheeeEEecC-CCceEEeccCCceEEEEcccc-cc-Cc-ccccccccC-CCeEEeee------------ccccCccEEE
Confidence 56889999999 899999999888888753211 00 00 000000000 00000000 1223445666
Q ss_pred EEEccCCCceEEEEcCCeEEEEEc--cCCcee-EEEecCCCccceEEEEEc--C--CCCEEEEEe-CCCcEEEEEccCCc
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDL--QYETPL-FSAALPRGCAKFLDVLAD--P--NNDLLYCAH-LDGKLSIWRRKEGE 330 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl--~t~~~l-~~~~l~~~~~~~~~v~~~--p--dg~~L~s~~-~DgtI~lW~~~~g~ 330 (1342)
.++||+|+.+++++.|++|++.-. ++.+.. ..+.+..+.+.+.+++|- | .|..|++++ .|-.|.+=|..+|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 699999999999999999887654 443332 112222344556666663 3 355788865 45667777777776
Q ss_pred eeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcC
Q 000703 331 QVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDD 410 (1342)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~D 410 (1342)
..+.+.+ +. | .|+++-.+ ++-.++++|.|
T Consensus 175 ~~~a~sg-ht-----g------hilalysw---------------------------------------n~~m~~sgsqd 203 (350)
T KOG0641|consen 175 GFHALSG-HT-----G------HILALYSW---------------------------------------NGAMFASGSQD 203 (350)
T ss_pred cceeecC-Cc-----c------cEEEEEEe---------------------------------------cCcEEEccCCC
Confidence 5555522 11 1 23332222 15689999999
Q ss_pred CcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCccccccee
Q 000703 411 GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFK 490 (1342)
Q Consensus 411 G~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k 490 (1342)
.+|++||+....+.+++- -.|
T Consensus 204 ktirfwdlrv~~~v~~l~-------------~~~---------------------------------------------- 224 (350)
T KOG0641|consen 204 KTIRFWDLRVNSCVNTLD-------------NDF---------------------------------------------- 224 (350)
T ss_pred ceEEEEeeeccceeeecc-------------Ccc----------------------------------------------
Confidence 999999997665543210 000
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCC
Q 000703 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN 570 (1342)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d 570 (1342)
.-.| | .++.|+++++.| .|.+||+|-.|....+||+..|+.++.|..|+..|++++|+|.
T Consensus 225 -~~~g-l--essavaav~vdp----------------sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 225 -HDGG-L--ESSAVAAVAVDP----------------SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred -cCCC-c--ccceeEEEEECC----------------CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence 0001 1 257899999998 5899999999999999999999999999999999999999998
Q ss_pred CcEEEEecCCcccccCcccCEEEEEEcCCCce--eeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEec
Q 000703 571 SRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN--RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~--~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl 642 (1342)
..++. ++.||+.|++.|+..... -++..... |...+-.++|+|..--+++.+.|+++.+|.+
T Consensus 285 a~yll---------t~syd~~ikltdlqgdla~el~~~vv~e-hkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 285 AHYLL---------TCSYDMKIKLTDLQGDLAHELPIMVVAE-HKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEE---------EecccceEEEeecccchhhcCceEEEEe-ccCceEEEEecCccceeeeccCcceEEEecc
Confidence 75543 345667999999864321 12333233 7778888999999888999999999999986
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=1.2e-16 Score=186.73 Aligned_cols=306 Identities=14% Similarity=0.160 Sum_probs=191.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcE------EEEeeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAV------TASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~------~~~l~gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
..++||.+.+||.|.++|...... ++.+..|..+|..+.|.|.. +||+.+.| .++++||+.++
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD----------sT~r~Wdvk~s 132 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD----------STIRPWDVKTS 132 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC----------ceeeeeeeccc
Confidence 568999999999999999865432 35567899999999999843 67776665 49999999998
Q ss_pred ceeeeEEeccCCCCCeEEEEEcCCCC-EEEEEECCCCEEEEeccCCcceeeecc---CceEEEEEcCCCCCCCCCCCCCC
Q 000703 601 INRAFRVLQKPERAPIRALRASSSGR-YLLILFRDAPVEVWAMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSR 676 (1342)
Q Consensus 601 ~~~~l~~l~g~h~~~I~~i~~Spdg~-~Las~s~D~tIkvWDl~kt~~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k 676 (1342)
+.+-.+...| |...|.+++|.|+.. .|++|++|+.|.|||++.++ ...++ ..++... .+++.+.+ +.+
T Consensus 133 ~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~--~d~~e~~~~~~~~~~---n~~ptpsk--p~~ 204 (720)
T KOG0321|consen 133 RLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG--VDALEEFDNRIYGRH---NTAPTPSK--PLK 204 (720)
T ss_pred eeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccc--hhhHHHHhhhhhccc---cCCCCCCc--hhh
Confidence 8555554555 899999999999765 67899999999999994222 11111 1111100 00011110 011
Q ss_pred -ccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEec-CCCEEEEEecCCee-eccCCCCCCCcccc
Q 000703 677 -QSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALA-NGALGVFEVHGRRI-RDFRPKWPSSSFIS 753 (1342)
Q Consensus 677 -~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~-DgtI~lwdv~g~~v-~d~~~~~~~~~~~~ 753 (1342)
+.....+....|.+ . +..... .+...||+++. |+.|++||+..+.. ....+. +...+..
T Consensus 205 kr~~k~kA~s~ti~s----s-----------vTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-~~~~~~t 266 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFS----S-----------VTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPR-GSDKYPT 266 (720)
T ss_pred ccccccccccCceee----e-----------eEEEEE--eccceeeeccCCCcceEEEeecccccccccCCC-cccCccC
Confidence 11000000000000 0 000111 23456888776 99999999954321 000000 0000111
Q ss_pred c---cceEEEEeec--CCEEEEEeCCCcEEEEECCCCce---eeeccccc---cEEEEEEecCCCCCCCCCEEEEEECCC
Q 000703 754 S---DGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGHS---SQFSTHRE---GIRRIKFSPVVPGDRSRGRIAVLFHDN 822 (1342)
Q Consensus 754 ~---~~~V~~va~d--g~~LasGs~DgtI~lWDl~tg~~---~~l~~H~~---~V~~v~fSPd~~g~~~~~~Las~s~Dg 822 (1342)
| ..-++++..| |.+|.+-+.|++|++||+.+-.. ..+.+|.. .|.++ .||+ + .+|++++.|.
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~-lSpd--~----~~l~SgSsd~ 339 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE-LSPD--D----CSLLSGSSDE 339 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee-cCCC--C----ceEeccCCCc
Confidence 1 1125566664 57877777899999999987432 22344432 23332 5788 4 7899999999
Q ss_pred eEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 823 TFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 823 tI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
...||.+.+.+.-. .++.||. ..|+.++|.|. ...+ +++++.|.++++|++..+
T Consensus 340 ~ayiw~vs~~e~~~-~~l~Ght--~eVt~V~w~pS---~~t~--v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 340 QAYIWVVSSPEAPP-ALLLGHT--REVTTVRWLPS---ATTP--VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceeeeeecCccCCh-hhhhCcc--eEEEEEeeccc---cCCC--ceeeccCcceEEEeccCc
Confidence 99999999887432 3446886 67999999986 1233 468899999999999543
No 134
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-15 Score=184.23 Aligned_cols=478 Identities=15% Similarity=0.174 Sum_probs=283.6
Q ss_pred CCCCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 25 NNFGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.+.....||+|+ .+....++.|.|+-..+++++.+|++|.. .++.+.+-|.. ++-.+
T Consensus 17 ~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-----------~l~s~~~~~~~-----------~~~~~ 74 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTA-----------PLTSVIVLPSS-----------ENANY 74 (792)
T ss_pred ceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccC-----------ccceeeecCCC-----------ccceE
Confidence 356789999999 56667889999999999999999999998 89999998864 22467
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeec------------CC------------------------
Q 000703 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVS------------KP------------------------ 147 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~------------~~------------------------ 147 (1342)
+.+++.||+|++||...+..+.+++... +|.++.+.|. ++
T Consensus 75 ~~~~sl~G~I~vwd~~~~~Llkt~~~~~----~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~ 150 (792)
T KOG1963|consen 75 LIVCSLDGTIRVWDWSDGELLKTFDNNL----PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD 150 (792)
T ss_pred EEEEecCccEEEecCCCcEEEEEEecCC----ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc
Confidence 8899999999999999999888775422 2222221000 00
Q ss_pred --------------------CCcEEEEEeCCCeEEEEECCCCeEEEEEe------CCCCceEEEEecCCCCCEEEEEeCC
Q 000703 148 --------------------DSFVLAAINGPSVLSLYNTTSASCMWKYD------ASPEYLSCIRRNPFDARHFCVLGLK 201 (1342)
Q Consensus 148 --------------------~~~lLas~s~d~~i~lWd~~tg~~i~~~~------~~~~~v~~v~fsP~d~~~la~~s~d 201 (1342)
.+.+.+.+ -+..+.+|++.+++ +... .|.-+++|++++| .++.+|++-.|
T Consensus 151 ~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~d 226 (792)
T KOG1963|consen 151 SAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSD 226 (792)
T ss_pred ccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccc--eeeccchhhhhhcccceeEEecc-ccceEEEeccC
Confidence 00111111 12345677777654 2111 1234578999999 99999999999
Q ss_pred CeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEE
Q 000703 202 GLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFD 281 (1342)
Q Consensus 202 G~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwD 281 (1342)
|.|++|.-.+. . ...+. .++ -|| |...|..++||+||..|++++..+-+.+|-
T Consensus 227 GrI~vw~d~~~-~----~~~~t--------~t~-lHW-------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 227 GRILVWRDFGS-S----DDSET--------CTL-LHW-------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred CcEEEEecccc-c----ccccc--------ceE-EEe-------------cccccceeEEecCCceEeecccceEEEEEe
Confidence 99999953321 0 00000 000 023 223577889999999999999999999999
Q ss_pred ccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEcc
Q 000703 282 LQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQ 361 (1342)
Q Consensus 282 l~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~ 361 (1342)
++++.. ++ ++|-.+++..++.+||++......+|..|-+-...+-+...++.+.. | +. +
T Consensus 280 ~~T~~k--qf-LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~---~------~~---------~ 338 (792)
T KOG1963|consen 280 LETGKK--QF-LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK---P------PT---------P 338 (792)
T ss_pred ecCCCc--cc-ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc---C------CC---------c
Confidence 999973 22 46777999999999999988888999999888765433212221100 0 00 0
Q ss_pred CchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEccccccccccc------ccccccC
Q 000703 362 SESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQK------DAIKSGM 435 (1342)
Q Consensus 362 ~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~------~~~~~~~ 435 (1342)
+ .|+ ..+. ....++++| ....++.-+..|.|.++|+-+...+..+. .....-.
T Consensus 339 ~-------~k~---~~~~--------l~t~~~idp---r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 339 S-------TKT---RPQS--------LTTGVSIDP---RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred c-------ccc---cccc--------cceeEEEcC---CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 0 000 0000 012223333 12366677788999999987765543211 0000000
Q ss_pred Ccccccccc--cCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEE-----------eeeccccCc
Q 000703 436 DADVIDVAL--CGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSL-----------DGQLQILSS 502 (1342)
Q Consensus 436 ~~~v~~v~~--~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l-----------~g~l~g~~~ 502 (1342)
...+..+++ .|.- |..++. +..-..+. ..+.++||.. +-...-|..
T Consensus 398 ~v~itav~~~~~gs~---------maT~E~--------~~d~~~~~----~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 398 QVGITAVARSRFGSW---------MATLEA--------RIDKFNFF----DGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred EEeeeeehhhccceE---------EEEeee--------eehhhhcc----CceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 011111111 0100 011110 00000000 0123444421 112233555
Q ss_pred ceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----------cEEEEeeecCCCeEEEEEcCCCc
Q 000703 503 TVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----------AVTASFSVHNGTVRGLRWLGNSR 572 (1342)
Q Consensus 503 ~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----------~~~~~l~gH~~~V~~l~fs~d~~ 572 (1342)
.+.+..+.++ .....+++++.||.++||-+... .|...-.-|..++.+.+|+.||.
T Consensus 457 ~~vat~~~~~--------------~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 457 AFVATIFLNP--------------TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eeEEEEEecC--------------cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc
Confidence 5555555553 12337899999999999998322 13332234889999999999999
Q ss_pred EEEEecCCcccccCcccCEEEEEEcCC-CceeeeEEeccCCCCCeEEEEEcCCC--CEEEEEECCCCEEEEeccCCccee
Q 000703 573 LVSFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIML 649 (1342)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~g~h~~~I~~i~~Spdg--~~Las~s~D~tIkvWDl~kt~~~l 649 (1342)
+++.|+++ +|.+||..+ .+ +....+...-++..+.+.... ...++......+.+|++ .+..+.
T Consensus 523 lla~s~~~----------~Itiwd~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNl-l~~~l~ 588 (792)
T KOG1963|consen 523 LLAVSFDD----------TITIWDYDTKNE---LLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNL-LSMSLI 588 (792)
T ss_pred EEEEecCC----------EEEEecCCChhh---hhccccccccchHhHhhhcccccccceeeccCceEehHhh-hhhhee
Confidence 99988764 899999977 32 111111122344444443321 22334455678899998 555444
Q ss_pred e
Q 000703 650 R 650 (1342)
Q Consensus 650 ~ 650 (1342)
.
T Consensus 589 w 589 (792)
T KOG1963|consen 589 W 589 (792)
T ss_pred c
Confidence 3
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=8.3e-17 Score=187.96 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=147.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEE---EEe-cCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE-
Q 000703 100 SHLLLAAADRHGRVALLDFRLRSVV---LWI-DPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK- 174 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~~~g~~~---~~l-~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~- 174 (1342)
...+||.++.||.|++.|...-... +.| ....|-+ .|-++.|.|.. ..|+++++|.++++||+.+++++..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wapge---~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAPGE---SLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-eeEeeccCCCc---eeEEEccCCceeeeeeeccceeecce
Confidence 4678999999999999998654322 111 1246777 99999999943 7899999999999999999988876
Q ss_pred -EeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe--cCc--chhhhhhhhhccccCCCCCCC
Q 000703 175 -YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ--TDC--TELLKLERELSAGAASLSPAS 249 (1342)
Q Consensus 175 -~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~--~~~--~~l~~l~~~~~~~s~~~~p~~ 249 (1342)
+.+|...+.+++|.|+|+..||+|+.||.|++||..-..-+......-+++ +.+ .....+.+..-. .
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k--------~ 210 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK--------W 210 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc--------c
Confidence 778888999999999999999999999999999986532100000000111 000 111111110000 0
Q ss_pred CcCccceEE---EEEccCCCceEEEEc-CCeEEEEEccCCceeEEE------ecCCC---ccceEEEEEcCCCCEEEEEe
Q 000703 250 GLFPLYMVK---FTFSPHWRHIIFVTF-PRELVVFDLQYETPLFSA------ALPRG---CAKFLDVLADPNNDLLYCAH 316 (1342)
Q Consensus 250 ~~~~~~v~~---~aFSpdg~~ll~~~~-d~~I~iwDl~t~~~l~~~------~l~~~---~~~~~~v~~~pdg~~L~s~~ 316 (1342)
.++.+.+.+ +.|..|..+|++++. |+.|+|||+....+.... ..+-+ ...++.+....-|.+|+..-
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 111122333 677888899999997 999999999876553221 11111 23455555556678888777
Q ss_pred CCCcEEEEEccC
Q 000703 317 LDGKLSIWRRKE 328 (1342)
Q Consensus 317 ~DgtI~lW~~~~ 328 (1342)
.|++|..|++.+
T Consensus 291 tD~sIy~ynm~s 302 (720)
T KOG0321|consen 291 TDNSIYFYNMRS 302 (720)
T ss_pred cCCcEEEEeccc
Confidence 799999999874
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.6e-17 Score=184.93 Aligned_cols=232 Identities=13% Similarity=0.108 Sum_probs=177.5
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1342)
++||| +.|++-+|.| +|+.| -.+.+++|...+|.++.++.+|-. .|||++|+-|
T Consensus 79 v~Pg~-----v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-----------~ITcL~fs~d-------- 134 (476)
T KOG0646|consen 79 VLPGP-----VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-----------SITCLKFSDD-------- 134 (476)
T ss_pred ccccc-----eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcc-----------ceeEEEEeCC--------
Confidence 89996 5699999999 34333 468999999999999999999998 8999999966
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCC---------CeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 95 TEPGSSHLLLAAADRHGRVALLDFRL---------RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 95 ~~~~p~g~~LASg~~dG~V~vWD~~~---------g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
|..|.||+.||.|.+|++.+ -..++.| .+|+- +|+++...+.+.+ -.|.|++.|.++++||
T Consensus 135 ------gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f--~~Htl-sITDl~ig~Gg~~-~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 135 ------GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF--SDHTL-SITDLQIGSGGTN-ARLYTASEDRTIKLWD 204 (476)
T ss_pred ------CcEEEecCCCccEEEEEEEeecccccCCCccceeee--ccCcc-eeEEEEecCCCcc-ceEEEecCCceEEEEE
Confidence 57899999999999998732 2344453 57877 9999998876644 6889999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCccc--ceeeeeEEEecCcchhhhhhhhhccccC
Q 000703 166 TTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED--EVVVKELQIQTDCTELLKLERELSAGAA 243 (1342)
Q Consensus 166 ~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~--~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1342)
+..|..+.++.+ +..+.+++.|| -.+++.+|+.+|.|++.++..-.+. +...|.+... ....+
T Consensus 205 lS~g~LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~--~t~~~----------- 269 (476)
T KOG0646|consen 205 LSLGVLLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE--NTQIN----------- 269 (476)
T ss_pred eccceeeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccc--cceee-----------
Confidence 999999999888 78999999999 7899999999999999876542211 1101111000 00000
Q ss_pred CCCCCCCcCcc--ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceE
Q 000703 244 SLSPASGLFPL--YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFL 301 (1342)
Q Consensus 244 ~~~p~~~~~~~--~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~ 301 (1342)
...++.+ .|..+++|-||..|+++..||.|+|||..+.++++++..-++.....
T Consensus 270 ----~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 270 ----VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL 325 (476)
T ss_pred ----eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Confidence 1112222 56777999999999999999999999999999998776333333333
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=171.98 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=158.2
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.-+|++|++- |.+||+|..||.|.|||+.|...-+. +.+|.. ||+++|||++| ++|++++
T Consensus 25 ~a~~~~Fs~~--------------G~~lAvGc~nG~vvI~D~~T~~iar~--lsaH~~-pi~sl~WS~dg---r~LltsS 84 (405)
T KOG1273|consen 25 LAECCQFSRW--------------GDYLAVGCANGRVVIYDFDTFRIARM--LSAHVR-PITSLCWSRDG---RKLLTSS 84 (405)
T ss_pred ccceEEeccC--------------cceeeeeccCCcEEEEEccccchhhh--hhcccc-ceeEEEecCCC---CEeeeec
Confidence 3678999976 57899999999999999998775555 468888 99999999998 9999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000703 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1342)
.|..+++||+..|.++..+.+ ..+|+.++|.|.+.+++++.-.+-.-.+.++++.. .. .+..+.
T Consensus 85 ~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~------h~-~Lp~d~-------- 148 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK------HS-VLPKDD-------- 148 (405)
T ss_pred CCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc------ee-eccCCC--------
Confidence 999999999999999999999 78999999999776666666555556666665411 01 111110
Q ss_pred hhccccCCCCCCCCcCccceE-EEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000703 237 ELSAGAASLSPASGLFPLYMV-KFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1342)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~-~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1342)
....+.+. ...|.+.|+.++++...|.+.++|.++-++++.+.+.. ...+-++.++..|+.|+.-
T Consensus 149 -------------d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 149 -------------DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred -------------ccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEe
Confidence 00000111 11699999999999999999999999999988877642 3456778888999999999
Q ss_pred eCCCcEEEEEcc
Q 000703 316 HLDGKLSIWRRK 327 (1342)
Q Consensus 316 ~~DgtI~lW~~~ 327 (1342)
..|..||..+.+
T Consensus 215 tsDRvIR~ye~~ 226 (405)
T KOG1273|consen 215 TSDRVIRTYEIS 226 (405)
T ss_pred cCCceEEEEehh
Confidence 999999999876
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.2e-18 Score=201.86 Aligned_cols=238 Identities=21% Similarity=0.352 Sum_probs=182.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEec
Q 000703 530 PLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQ 609 (1342)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~ 609 (1342)
-+++.+..+-.++|||. +++..|+..|.++.....++++. .|+.+..+-||.+.. ..++..+.
T Consensus 5 ~~~m~~~~~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~---------~Gg~~~k~~L~~i~k--p~~i~S~~ 67 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLV---------TGGEDEKVNLWAIGK--PNAITSLT 67 (825)
T ss_pred cccceeeeeeccccccc------hhhhhhhhhhceeeeeccceeec---------cCCCceeeccccccC--Cchhheee
Confidence 34445555556889986 45668998888887755555553 345555667887633 22455556
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCC
Q 000703 610 KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHK 686 (1342)
Q Consensus 610 g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~ 686 (1342)
+ |+.+|.+|.|+++...|+.|+.+|+||+||+ ..++.+|++.+ +++.+.|+|-
T Consensus 68 ~-hespIeSl~f~~~E~LlaagsasgtiK~wDl-eeAk~vrtLtgh~~~~~sv~f~P~---------------------- 123 (825)
T KOG0267|consen 68 G-HESPIESLTFDTSERLLAAGSASGTIKVWDL-EEAKIVRTLTGHLLNITSVDFHPY---------------------- 123 (825)
T ss_pred c-cCCcceeeecCcchhhhcccccCCceeeeeh-hhhhhhhhhhccccCcceeeeccc----------------------
Confidence 6 9999999999999999999999999999999 68888887763 4567777753
Q ss_pred CccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCC-eeeccCCCCCCCccccccceEEEEee--
Q 000703 687 ADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR-RIRDFRPKWPSSSFISSDGLITAMAY-- 763 (1342)
Q Consensus 687 ~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~-~v~d~~~~~~~~~~~~~~~~V~~va~-- 763 (1342)
++.+|.++.|+.+++||++.+ ....+ .+|.+.|..+.|
T Consensus 124 ------------------------------~~~~a~gStdtd~~iwD~Rk~Gc~~~~---------~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 124 ------------------------------GEFFASGSTDTDLKIWDIRKKGCSHTY---------KSHTRVVDVLRLSP 164 (825)
T ss_pred ------------------------------eEEeccccccccceehhhhccCceeee---------cCCcceeEEEeecC
Confidence 466788999999999999633 33322 257777888777
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCC
Q 000703 764 RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQP 842 (1342)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~g 842 (1342)
+|+++++|+.|.+++|||+..|+ +..|.+|.+.|..+.|+|.. -.+++++.|+++++||+++.+-+ ... .+
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e------~Lla~Gs~d~tv~f~dletfe~I-~s~-~~ 236 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE------VLLAPGSSDRTVRFWDLETFEVI-SSG-KP 236 (825)
T ss_pred CCceeeccCCcceeeeecccccccccccccccccccccccCchh------hhhccCCCCceeeeeccceeEEe-ecc-CC
Confidence 99999999999999999999998 67899999999999999982 35788999999999999988733 222 11
Q ss_pred CCCCCcEEEEEEeCC
Q 000703 843 QFPGTLVLELDWLPT 857 (1342)
Q Consensus 843 h~~~~~V~~l~ws~d 857 (1342)
- -..|.++.|+|+
T Consensus 237 ~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 237 E--TDGVRSLAFNPD 249 (825)
T ss_pred c--cCCceeeeecCC
Confidence 1 256899999998
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=6.9e-17 Score=178.84 Aligned_cols=244 Identities=20% Similarity=0.312 Sum_probs=174.8
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC----------------CcEEEEeeecCCCe
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA----------------NAVTASFSVHNGTV 562 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t----------------g~~~~~l~gH~~~V 562 (1342)
.|-+.+..++..+- +...+.|+=++.|.|+|||+.. .+.+.++.+|...=
T Consensus 149 ~h~g~~NRvr~~~~--------------~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG 214 (440)
T KOG0302|consen 149 PHYGGINRVRVSRL--------------GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG 214 (440)
T ss_pred ccccccceeeeccc--------------CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccc
Confidence 46667777777761 1467889999999999999852 12456788999999
Q ss_pred EEEEEcC--CCcEEEEecCCcccccCcccCEEEEEEcCCCce----eeeEEeccCCCCCeEEEEEcCCC-CEEEEEECCC
Q 000703 563 RGLRWLG--NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN----RAFRVLQKPERAPIRALRASSSG-RYLLILFRDA 635 (1342)
Q Consensus 563 ~~l~fs~--d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~----~~l~~l~g~h~~~I~~i~~Spdg-~~Las~s~D~ 635 (1342)
.+|.||| .|++++ |...+.|++|-..+|.. +++ .+ |...|+.++|||.. ..||++|-|+
T Consensus 215 y~LdWSp~~~g~Lls----------GDc~~~I~lw~~~~g~W~vd~~Pf---~g-H~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLS----------GDCVKGIHLWEPSTGSWKVDQRPF---TG-HTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred eeeeccccccccccc----------CccccceEeeeeccCceeecCccc---cc-cccchhhhccCCccCceEEeeecCc
Confidence 9999998 456653 33445899999988763 233 34 88899999999964 5788999999
Q ss_pred CEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCC
Q 000703 636 PVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDD 715 (1342)
Q Consensus 636 tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~ 715 (1342)
+|+|||+ +.+..- + +
T Consensus 281 sIrIWDi-Rs~~~~-----~--~--------------------------------------------------------- 295 (440)
T KOG0302|consen 281 SIRIWDI-RSGPKK-----A--A--------------------------------------------------------- 295 (440)
T ss_pred eEEEEEe-cCCCcc-----c--e---------------------------------------------------------
Confidence 9999998 443100 0 0
Q ss_pred CCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc----eee
Q 000703 716 TSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH----SSQ 789 (1342)
Q Consensus 716 ~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~----~~~ 789 (1342)
+.+ + .|.+-|+.|+| +-.+||+|+.||+++|||++.-+ ..+
T Consensus 296 -------------~~~--------k------------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 296 -------------VST--------K------------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred -------------eEe--------e------------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 000 0 13445788888 33489999999999999998743 458
Q ss_pred eccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCc-------cccc-------ccCCCCCCCcEEEEEEe
Q 000703 790 FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP-------LANS-------LLQPQFPGTLVLELDWL 855 (1342)
Q Consensus 790 l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~-------l~~~-------l~~gh~~~~~V~~l~ws 855 (1342)
|.-|+.+|++|.|+|... ..||+++.|..|.|||+..... -... |+--|.+...+.++.|+
T Consensus 343 fk~Hk~pItsieW~p~e~-----s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHED-----SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred EEeccCCeeEEEeccccC-----ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheec
Confidence 899999999999999743 5689999999999999864321 0011 22234444678899999
Q ss_pred CCCCCCCCCeEEEEEeCCCcEEEE
Q 000703 856 PTRTDKNDPLVLCIAGADSSFRLI 879 (1342)
Q Consensus 856 ~d~~~~g~~~~L~s~s~DgtIrvW 879 (1342)
+. .|-+|++.+.||- -||
T Consensus 418 ~Q-----iPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 418 RQ-----IPGLLVSTAIDGF-NVF 435 (440)
T ss_pred cC-----CCCeEEEecccce-eEE
Confidence 86 4436888888884 344
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=2.4e-16 Score=169.27 Aligned_cols=185 Identities=26% Similarity=0.402 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEe
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1342)
..++|+|+.|-.|++-|+.+|.+.++|+||...|.+++|+|...++.+ +|+.|+.|++||++.-. -+++++
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLa--------tgsaDg~irlWDiRras-gcf~~l 228 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLA--------TGSADGAIRLWDIRRAS-GCFRVL 228 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEE--------ecCCCceEEEEEeeccc-ceeEEe
Confidence 469999999999999999999999999999999999999998876653 45667899999996421 023332
Q ss_pred c-------------cCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcc-eeeeccCce-----EEEEEcCCCCCCC
Q 000703 609 Q-------------KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI-MLRSLALPF-----TVLEWTLPTVPWP 669 (1342)
Q Consensus 609 ~-------------g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~-~l~~l~~~v-----t~l~wsp~~~~~~ 669 (1342)
. ..|.+.|.+++|+.||+++++.+.|..+++|++ .+|. -++.+. ++ ++..+.
T Consensus 229 D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~-~~G~ntl~~~g-~~~~n~~~~~~~~------- 299 (397)
T KOG4283|consen 229 DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM-ESGRNTLREFG-PIIHNQTTSFAVH------- 299 (397)
T ss_pred ecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec-ccCcccccccc-cccccccccceEE-------
Confidence 1 136678899999999999999999999999999 4553 233322 11 000000
Q ss_pred CCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe-cCCeeeccCCCCCC
Q 000703 670 SQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV-HGRRIRDFRPKWPS 748 (1342)
Q Consensus 670 ~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv-~g~~v~d~~~~~~~ 748 (1342)
.+..+...|+.--.++++.++++ +|.+++-++
T Consensus 300 ------------------------------------------~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~----- 332 (397)
T KOG4283|consen 300 ------------------------------------------IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS----- 332 (397)
T ss_pred ------------------------------------------EeecccceEEEEecCCeEEEEEccCceEEEeee-----
Confidence 01123345666667799999997 677776432
Q ss_pred CccccccceEEEEeecC--CEEEEEeCCCcEEEEEC
Q 000703 749 SSFISSDGLITAMAYRL--PHVVMGDRSGNIRWWDV 782 (1342)
Q Consensus 749 ~~~~~~~~~V~~va~dg--~~LasGs~DgtI~lWDl 782 (1342)
+|-..|.|-++.+ +.+.+|+.|++|..|-+
T Consensus 333 ----~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 ----THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ----cccceeeEEeecCchhhhhccccCCccccccc
Confidence 3555688888844 56999999999999977
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=2.5e-16 Score=178.76 Aligned_cols=285 Identities=19% Similarity=0.211 Sum_probs=202.4
Q ss_pred CCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceE
Q 000703 178 SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMV 257 (1342)
Q Consensus 178 ~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~ 257 (1342)
|.+.|-.++++- ..+++.++| .|.|++||++.... +..++ .|.-+ .-.+++.
T Consensus 418 HGEvVcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~------k~Pvs----qLdcl----------------~rdnyiR 469 (705)
T KOG0639|consen 418 HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISQPGN------KSPVS----QLDCL----------------NRDNYIR 469 (705)
T ss_pred cCcEEEEEEecC-CcceeEecC-CCeEEEeeccCCCC------CCccc----ccccc----------------Cccccee
Confidence 356666777776 567788877 59999999876321 11110 01101 1124788
Q ss_pred EEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEee
Q 000703 258 KFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCT 337 (1342)
Q Consensus 258 ~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~ 337 (1342)
+|..+||||+|+++++-.++-||||+..+..-...+....-.-..++.+||.++.+++-.||.|.|||+.....++.+.+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG 549 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG 549 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC
Confidence 89999999999999999999999999876542222322112234567789999999999999999999986554444422
Q ss_pred cccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEE
Q 000703 338 MEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWL 417 (1342)
Q Consensus 338 ~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWd 417 (1342)
+.. .. +|.-++.+|+.|-+|+-|.+||-||
T Consensus 550 htD---------------------------------------------Ga-----scIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 550 HTD---------------------------------------------GA-----SCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred CCC---------------------------------------------Cc-----eeEEecCCCceeecCCCccceeehh
Confidence 111 11 1111223378999999999999999
Q ss_pred cccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeec
Q 000703 418 LTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQL 497 (1342)
Q Consensus 418 l~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l 497 (1342)
+..++.+..+
T Consensus 580 lregrqlqqh---------------------------------------------------------------------- 589 (705)
T KOG0639|consen 580 LREGRQLQQH---------------------------------------------------------------------- 589 (705)
T ss_pred hhhhhhhhhh----------------------------------------------------------------------
Confidence 9876532210
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCc-EEEE
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR-LVSF 576 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~-llS~ 576 (1342)
-.++-|+++..|| .+.+||+|-+++.|.|-.. ++.....+.-|.+-|.++.|.+.|+ |+|.
T Consensus 590 -dF~SQIfSLg~cP----------------~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 590 -DFSSQIFSLGYCP----------------TGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred -hhhhhheecccCC----------------CccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeec
Confidence 0134577788888 5889999999999999886 4666667888999999999999886 5554
Q ss_pred ecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEec
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl 642 (1342)
+- ||-+-.|-..-|.. .| +..+.++|.++.+|.|.+|+++||.|+.-.||.+
T Consensus 652 Gk----------DnlLnawrtPyGas-iF---qskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GK----------DNLLNAWRTPYGAS-IF---QSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred Cc----------hhhhhhccCccccc-ee---eccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 43 45677887776752 23 2347789999999999999999999988888865
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-15 Score=171.81 Aligned_cols=201 Identities=17% Similarity=0.163 Sum_probs=152.8
Q ss_pred CCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC--CeEEEEecCCCCCCCCeeEEEEeecCCCCcEE
Q 000703 75 SPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL--RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVL 152 (1342)
Q Consensus 75 ~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~--g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lL 152 (1342)
...|++|+|+|. -++|.+|+-||+++|+-+.. ...++.+.+. +.||..++|.|+|. ..+
T Consensus 213 ~~~I~sv~FHp~--------------~plllvaG~d~~lrifqvDGk~N~~lqS~~l~---~fPi~~a~f~p~G~--~~i 273 (514)
T KOG2055|consen 213 HGGITSVQFHPT--------------APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE---KFPIQKAEFAPNGH--SVI 273 (514)
T ss_pred cCCceEEEecCC--------------CceEEEecCCCcEEEEEecCccChhheeeeec---cCccceeeecCCCc--eEE
Confidence 458999999985 47899999999999998742 2344554332 34999999999872 488
Q ss_pred EEEeCCCeEEEEECCCCeEEE--EEeCCC-CceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcc
Q 000703 153 AAINGPSVLSLYNTTSASCMW--KYDASP-EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCT 229 (1342)
Q Consensus 153 as~s~d~~i~lWd~~tg~~i~--~~~~~~-~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~ 229 (1342)
++++....+..||+.+++... ..-+.. ..+..+..+| |+..|++.|..|.|.+..... +++
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT--------~el------- 337 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT--------KEL------- 337 (514)
T ss_pred EecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh--------hhh-------
Confidence 888888999999999886432 222222 2556888899 899999999999998853211 111
Q ss_pred hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCC
Q 000703 230 ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN 309 (1342)
Q Consensus 230 ~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg 309 (1342)
+++ -..++.+..++|+-||+.|+.++.+|+|.+||+....+++.+.-. |+..-.+++.+++|
T Consensus 338 --------i~s---------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng 399 (514)
T KOG2055|consen 338 --------ITS---------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNG 399 (514)
T ss_pred --------hhe---------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCC
Confidence 000 012334778899999999999999999999999999888888654 44555678888999
Q ss_pred CEEEEEeCCCcEEEEEccC
Q 000703 310 DLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 310 ~~L~s~~~DgtI~lW~~~~ 328 (1342)
++||||+.-|.|-|++..+
T Consensus 400 ~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ceEEeccCcceEEEeccch
Confidence 9999999999999999764
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.9e-15 Score=162.46 Aligned_cols=261 Identities=19% Similarity=0.299 Sum_probs=172.9
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeeecCCCeEEEEEcCC--Cc
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----AVTASFSVHNGTVRGLRWLGN--SR 572 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----~~~~~l~gH~~~V~~l~fs~d--~~ 572 (1342)
+|..-|+++.|.+ +|+.+|+++.|++|+|||.... .+......|.+.|..|.|.+. |+
T Consensus 11 ~h~DlihdVs~D~----------------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF----------------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecc----------------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc
Confidence 4677788999887 7999999999999999996433 467788999999999999653 45
Q ss_pred EE-EEecCCcccccCcccCEEEEEEcCC------C-ceeeeEEeccCCCCCeEEEEEcCC--CCEEEEEECCCCEEEEec
Q 000703 573 LV-SFSYSQVNEKSGGYINRLVVTCLRS------G-INRAFRVLQKPERAPIRALRASSS--GRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 573 ll-S~s~d~~~~~sg~~~~~i~lwD~~t------G-~~~~l~~l~g~h~~~I~~i~~Spd--g~~Las~s~D~tIkvWDl 642 (1342)
++ ++++ |.++.||.-.. | +-+...++.. .+..|+.|.|.|. |-.||+++.||.+|||+.
T Consensus 75 vvA~cS~----------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 75 VVATCSY----------DRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eEEEEec----------CCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 54 4444 45899997521 1 1112223333 5678999999985 788999999999999997
Q ss_pred cCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEE
Q 000703 643 TKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1342)
Q Consensus 643 ~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~ 722 (1342)
-..--++ .|....-. .+ .. ++.+.
T Consensus 144 -~dp~nLs---------~W~Lq~Ei--------------------------------------~~--~~--~pp~~---- 167 (361)
T KOG2445|consen 144 -PDPMNLS---------QWTLQHEI--------------------------------------QN--VI--DPPGK---- 167 (361)
T ss_pred -CCccccc---------cchhhhhh--------------------------------------hh--cc--CCccc----
Confidence 3322221 12211000 00 00 00000
Q ss_pred EecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-----cCCEEEEEeCC-----CcEEEEECCCC--c---e
Q 000703 723 ALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-----RLPHVVMGDRS-----GNIRWWDVTTG--H---S 787 (1342)
Q Consensus 723 ~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-----dg~~LasGs~D-----gtI~lWDl~tg--~---~ 787 (1342)
+.....||+| ..++||.|+.+ +.++||....+ + .
T Consensus 168 -------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 168 -------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred -------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 0011223444 23466666665 57888877653 3 3
Q ss_pred eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC-------ccc-----------ccccCCCCCCCcE
Q 000703 788 SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD-------PLA-----------NSLLQPQFPGTLV 849 (1342)
Q Consensus 788 ~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~-------~l~-----------~~l~~gh~~~~~V 849 (1342)
.++++|+.+|+.|+|+|..+ ..-..||+++.|| |+||.++... .+. ......|. +.|
T Consensus 217 a~L~d~~dpI~di~wAPn~G--r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~--~~V 291 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIG--RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN--GEV 291 (361)
T ss_pred hhcCCCCCcceeeeeccccC--CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC--Cce
Confidence 46789999999999999843 1223589999999 9999987411 000 01113443 689
Q ss_pred EEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 850 LELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 850 ~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
+.+.|+-. |. +|+|.|.||+||+|.....
T Consensus 292 Wrv~wNmt----Gt--iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 292 WRVRWNMT----GT--ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEEEEeee----ee--EEeecCCCceeeehhhhhh
Confidence 99999986 44 7899999999999997643
No 144
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.7e-15 Score=160.85 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=126.5
Q ss_pred CcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEE
Q 000703 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1342)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1342)
..|+.|+|+|.+ ..|+.++.||.++++|+..-.....+ .|.. |+.+++|.++ ..++++
T Consensus 14 d~IS~v~f~~~~--------------~~LLvssWDgslrlYdv~~~~l~~~~---~~~~-plL~c~F~d~----~~~~~G 71 (323)
T KOG1036|consen 14 DGISSVKFSPSS--------------SDLLVSSWDGSLRLYDVPANSLKLKF---KHGA-PLLDCAFADE----STIVTG 71 (323)
T ss_pred hceeeEEEcCcC--------------CcEEEEeccCcEEEEeccchhhhhhe---ecCC-ceeeeeccCC----ceEEEe
Confidence 489999999753 45666679999999999877655554 3455 9999999874 467889
Q ss_pred eCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhh
Q 000703 156 NGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLE 235 (1342)
Q Consensus 156 s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~ 235 (1342)
+-|+.|++.|+.+|+.. .+..|.+.+.|+.+.+ -...++++|-|+.|.+||......... +
T Consensus 72 ~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~----~------------- 132 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGT----F------------- 132 (323)
T ss_pred ccCceEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccc----c-------------
Confidence 99999999999988653 3445578999999998 567888899999999999754211000 0
Q ss_pred hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000703 236 RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1342)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1342)
..+..|. +-+-.|..|+.++.|+.|.+||+......-.....+-......|..-|++.-.+++
T Consensus 133 ---------------d~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 133 ---------------DQGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred ---------------ccCceEE--EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE
Confidence 0011244 23344678999999999999999865432111100001222334444555555555
Q ss_pred eCCCcEE
Q 000703 316 HLDGKLS 322 (1342)
Q Consensus 316 ~~DgtI~ 322 (1342)
+.||+|.
T Consensus 196 SieGRVa 202 (323)
T KOG1036|consen 196 SIEGRVA 202 (323)
T ss_pred eecceEE
Confidence 5555543
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=5.1e-13 Score=157.25 Aligned_cols=375 Identities=18% Similarity=0.230 Sum_probs=249.9
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCCCCe
Q 000703 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS-VVLWIDPDPNPKLGI 137 (1342)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~-~~~~l~~~~h~~~~V 137 (1342)
.+.+|.. .|..+.|.+. +..++.++.|+.+.+||...+. ....+.. .+.. .+
T Consensus 60 ~~~~~~~-----------~i~~~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 112 (466)
T COG2319 60 LLRGHED-----------SITSIAFSPD--------------GELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDS-SV 112 (466)
T ss_pred eeeeccc-----------eEEEEEECCC--------------CcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCC-ce
Confidence 4567777 8999999876 4678888899999999998886 5555422 1222 57
Q ss_pred eEEEE-eecCCCCcEEEEEeC-CCeEEEEECCC-CeEEEEEeCCCCceEEEEecCCCCCEEEEEeC-CCeEEEEEecCCc
Q 000703 138 QDLCW-IVSKPDSFVLAAING-PSVLSLYNTTS-ASCMWKYDASPEYLSCIRRNPFDARHFCVLGL-KGLLLSVRVLGQK 213 (1342)
Q Consensus 138 ~~l~w-sp~~~~~~lLas~s~-d~~i~lWd~~t-g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~-dG~v~~~d~~~~~ 213 (1342)
..+.+ .+++ ..+++..+. |+.+.+||..+ +..+..+..|.+.+.+++|+| +++.++.++. |+.+.+|+.....
T Consensus 113 ~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 113 SKLALSSPDG--NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred eeEEEECCCc--ceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc
Confidence 77777 5544 225555444 89999999987 677777888888999999999 7778888875 9999999875311
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC-ceEEEEcCCeEEEEEccCCceeE-EE
Q 000703 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR-HIIFVTFPRELVVFDLQYETPLF-SA 291 (1342)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~-~ll~~~~d~~I~iwDl~t~~~l~-~~ 291 (1342)
. ...+ . .+...+..++|+|+++ .+++++.|+.|++||...+..+. .+
T Consensus 190 ~----~~~~------------~---------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 190 P----LSTL------------A---------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred e----EEee------------c---------------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 0 1110 0 1222477789999998 44444899999999999777776 34
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCce-eeeEeecccccccccccCCCCceEEEEEccCchhhhhhh
Q 000703 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQ-VHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVA 370 (1342)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~-~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~ 370 (1342)
..+. ..... .++|++..+++++.|+.+++|+.+.... ...+.+. ...+..+.+.|
T Consensus 239 ~~~~--~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~--------- 294 (466)
T COG2319 239 SGHS--DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH------------SSSVLSVAFSP--------- 294 (466)
T ss_pred CCCC--cceeE-eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC------------CccEEEEEECC---------
Confidence 3332 22111 6789999999999999999999886543 1111000 11233333332
Q ss_pred hhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccc
Q 000703 371 KLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTN 450 (1342)
Q Consensus 371 k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~ 450 (1342)
.+..+++++.|+.+.+|++........ .
T Consensus 295 -----------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------~ 322 (466)
T COG2319 295 -----------------------------DGKLLASGSSDGTVRLWDLETGKLLSS-----------------------L 322 (466)
T ss_pred -----------------------------CCCEEEEeeCCCcEEEEEcCCCceEEE-----------------------e
Confidence 144677788899999997654421110 0
Q ss_pred cCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCC
Q 000703 451 SMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVP 530 (1342)
Q Consensus 451 ~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~ 530 (1342)
. ..+|...+..+.+ ++ ++.
T Consensus 323 -----------------------------------------~----~~~~~~~~~~~~~-~~---------------~~~ 341 (466)
T COG2319 323 -----------------------------------------T----LKGHEGPVSSLSF-SP---------------DGS 341 (466)
T ss_pred -----------------------------------------e----ecccCCceEEEEE-CC---------------CCC
Confidence 0 1124446777777 43 223
Q ss_pred EEEEE-eCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEec
Q 000703 531 LVALG-TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQ 609 (1342)
Q Consensus 531 llAsG-s~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~ 609 (1342)
.++.+ ..|+.+++|++...........+. .+..+.|.+ . ....+ .+..++.+.+|+....... ....
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~ 409 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVS-------SGSTDGTVRLWDLSTGSLL--RNLD 409 (466)
T ss_pred EEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEE-------EecCCCceEEEecccCeee--eecc
Confidence 44444 688999999998877322222222 278888877 5 22222 1223468999999887632 2212
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCC
Q 000703 610 KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKN 645 (1342)
Q Consensus 610 g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt 645 (1342)
. +...+....+++++.++++++.+.++++|+. .+
T Consensus 410 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 443 (466)
T COG2319 410 G-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDL-KT 443 (466)
T ss_pred C-CCCcEEEEEECCCCcEEEEecCCCcEEEEec-cC
Confidence 1 1168899999999999999999999999998 45
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.6e-15 Score=182.20 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=194.3
Q ss_pred CCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 22 PSRNNFGSADLSPSG--LLAFASGSSISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 22 ~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~s~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
.|......+.|.|+| ++..|+++.|++|+..+. ..-.++..|.. .|.+++-
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~-----------~v~~ia~--------------- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE-----------LVSSIAC--------------- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCc-----------eeEEEee---------------
Confidence 466667889999999 455567899999997665 22223333444 6766653
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCe---EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE
Q 000703 99 SSHLLLAAADRHGRVALLDFRLRS---VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~vWD~~~g~---~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1342)
++.+|++|+.+++|.++.+.+++ .+..|.+ |+.+++|+.+| .++|.++.|-.|++-++.++.....+
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g---~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL------PIRDLAVSGSG---KMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeec------cceEEEEecCC---cEEEeecCceeEEEEeccccchheee
Confidence 24689999999999999998875 3455433 89999999887 89999999999999999998888888
Q ss_pred eCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCC-CcCcc
Q 000703 176 DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPAS-GLFPL 254 (1342)
Q Consensus 176 ~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~-~~~~~ 254 (1342)
.+|..+|.++.|+| .+..||+.+.||.|++||++..... + .+.+. .|.. .....
T Consensus 135 rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~----~------------tl~~v--------~k~n~~~~s~ 189 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS----K------------TLTGV--------DKDNEFILSR 189 (933)
T ss_pred cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh----h------------hcccC--------Cccccccccc
Confidence 99899999999999 8999999999999999998653211 0 11110 0000 00012
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
-|.+++|+|+|.++++...|++|.+++.+.......+........|..+.++|+|.+||++..||.|.|||+++
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 37789999999999999999999999999999888887765666788999999999999999999999999985
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.2e-16 Score=187.97 Aligned_cols=234 Identities=15% Similarity=0.197 Sum_probs=176.1
Q ss_pred CceEeCCC--CeEEEEcC-CeEEEEeCCC---cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCC
Q 000703 28 GSADLSPS--GLLAFASG-SSISILDSRS---LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 28 ~a~~~s~~--gllA~gs~-~~V~v~d~~s---~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
+-|.|+-- .+||+++- +.|.+||... .+.++.|..|+. .|+++.|++-- .
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-----------s~~~ldfh~te-------------p 146 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER-----------SANKLDFHSTE-------------P 146 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc-----------ceeeeeeccCC-------------c
Confidence 35778832 38999875 6889999875 566789999998 89999999753 4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC-eEEEEEeCCCC
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SCMWKYDASPE 180 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~i~~~~~~~~ 180 (1342)
.+|+||+.||+|++||++...-..++ .+.+. .|.++.|+|.. +...++++..|.|.+||++-. ++..++.+|.+
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~--~~nSE-SiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTF--RSNSE-SIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccc--cccch-hhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence 68999999999999999988777764 56777 99999999975 378999999999999999744 35567889999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
+|.|+.|+| +...||+||.|+.|++||+.+.... ..+.| . ...| +.++.
T Consensus 222 pV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~----~~~tI----------n--------------Tiap--v~rVk 270 (839)
T KOG0269|consen 222 PVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAK----PKHTI----------N--------------TIAP--VGRVK 270 (839)
T ss_pred ceEEEeecC-CCceeeecCCCccEEEEeccCCCcc----ceeEE----------e--------------ecce--eeeee
Confidence 999999999 9999999999999999998642110 11111 0 0112 56779
Q ss_pred EccCCCceEEEE---cCCeEEEEEccCCc-eeEEEecCCCccceEEEEE-cCCCCEEEEEeCCCcEEE
Q 000703 261 FSPHWRHIIFVT---FPRELVVFDLQYET-PLFSAALPRGCAKFLDVLA-DPNNDLLYCAHLDGKLSI 323 (1342)
Q Consensus 261 FSpdg~~ll~~~---~d~~I~iwDl~t~~-~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~~DgtI~l 323 (1342)
|=|+.++++..+ .|..|.|||+.-.= +-.++.-| ...+..+++ +.|...|.+++.||+|..
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 999987666554 58999999997432 12333323 333444554 346678888888888753
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=5.4e-15 Score=159.06 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=185.9
Q ss_pred CCCCCCCceEeCCC-C-eEEE-EcCCeEEEEeCCCcc----------eeE-eecCCCCCCCCCCCCCCCcEEEEEEecCC
Q 000703 22 PSRNNFGSADLSPS-G-LLAF-ASGSSISILDSRSLQ----------LIS-TIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1342)
Q Consensus 22 ~~~~~~~a~~~s~~-g-llA~-gs~~~V~v~d~~s~~----------~~~-~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1342)
+|+..|++++..+. | ++.+ |++++|.|||.+... .+. +-+.|+. .-.+.|+.+.|-|-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~-------~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN-------GHKYAISSAIWYPID 113 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc-------cceeeeeeeEEeeec
Confidence 47778999999875 5 5554 578999999987642 111 1112222 113489999999853
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC
Q 000703 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1342)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1342)
--.+.|++-|.+++|||+.+-+..-.|..+ + .|+.-+|+|-.-.--++|++..+-.|+|.|+.
T Consensus 114 -------------tGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 114 -------------TGMFTSSSFDHTLKVWDTNTLQEAVDFKME---G-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred -------------CceeecccccceEEEeecccceeeEEeecC---c-eeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 347889999999999999998887777553 3 78888999976322688889999999999999
Q ss_pred CCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCC
Q 000703 168 SASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSP 247 (1342)
Q Consensus 168 tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p 247 (1342)
+|.+-+.+.+|.+.|.++.|+|...-.|++++.||.|++||+.-....-.....++ +...+-++
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn----~k~~p~~~------------ 240 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN----TKRPPILK------------ 240 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc----CccCcccc------------
Confidence 99999999999999999999997777889999999999999865322111011100 00000010
Q ss_pred CCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCcee-EEE-ecCCCc-cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000703 248 ASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL-FSA-ALPRGC-AKFLDVLADPNNDLLYCAHLDGKLSIW 324 (1342)
Q Consensus 248 ~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l-~~~-~l~~~~-~~~~~v~~~pdg~~L~s~~~DgtI~lW 324 (1342)
+...+.+.+..++|+.|++++++++.|..+++|+.+.|+.. ..+ +.-+.. ..+--...|-+.+.++-.=.|+++-+.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall 320 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALL 320 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEE
Confidence 12345667889999999999999999999999999988542 111 110110 011001124444544444455666666
Q ss_pred EccCCceeeeE
Q 000703 325 RRKEGEQVHVM 335 (1342)
Q Consensus 325 ~~~~g~~~~~~ 335 (1342)
+.-+|++++.+
T Consensus 321 ~~~sgs~ir~l 331 (397)
T KOG4283|consen 321 NLLEGSFVRRL 331 (397)
T ss_pred EccCceEEEee
Confidence 66555555444
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.69 E-value=6.9e-16 Score=175.18 Aligned_cols=243 Identities=10% Similarity=0.118 Sum_probs=186.7
Q ss_pred CCCCceEeCCCC-eEEEEcCCeEEEEeCCCc---ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCC
Q 000703 25 NNFGSADLSPSG-LLAFASGSSISILDSRSL---QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSS 100 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs~~~V~v~d~~s~---~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~ 100 (1342)
..|-|+..|... .+-+|..++|.|||+... ..+..|+--.. .-.|.+++.+||
T Consensus 420 EvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~r---------dnyiRSckL~pd-------------- 476 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNR---------DNYIRSCKLLPD-------------- 476 (705)
T ss_pred cEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCc---------ccceeeeEecCC--------------
Confidence 334577887555 666777899999998542 12333332211 116888888876
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
|+.|++|+.-.++-|||+.........++... ....+.|+.+||. ++..++-.||.|.|||+.....+..+.+|++
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltss-apaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCc-chhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 68899999999999999987766554444332 2267888999987 8888888999999999999999999999999
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
.+.|+..++ |+.+|=++|.|.+|+.||++.. +++ .++.+...|.++.
T Consensus 553 GascIdis~-dGtklWTGGlDntvRcWDlreg-------rql-------------------------qqhdF~SQIfSLg 599 (705)
T KOG0639|consen 553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREG-------RQL-------------------------QQHDFSSQIFSLG 599 (705)
T ss_pred CceeEEecC-CCceeecCCCccceeehhhhhh-------hhh-------------------------hhhhhhhhheecc
Confidence 999999999 9999999999999999997541 111 1223444688889
Q ss_pred EccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 261 FSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
++|.+.+++.+...+.+.|......+. ..+. -+.+-++++-|.+-|+++++.+.|.-+-.|+..-|.
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~k-yqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccc-eeec--ccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 999999999999999998887754433 3333 344668888888899999999999999999887665
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.3e-15 Score=172.39 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=168.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc---EEE------------------EeeecCCCeEEEEEcCCCcEEEEecCCcccccC
Q 000703 528 AVPLVALGTQSGAVDVVDVSANA---VTA------------------SFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSG 586 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~---~~~------------------~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg 586 (1342)
.|.++|+|+.|-.|.|||+.--. ... .-++|+.+|-++.|...-+-|.+ +|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa--------Sg 262 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA--------SG 262 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE--------ec
Confidence 47899999999999999985211 011 12479999999999887654443 35
Q ss_pred cccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCC-CCEEEEEECCCCEEEEeccCCccee---eeccCceEEEEEc
Q 000703 587 GYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIML---RSLALPFTVLEWT 662 (1342)
Q Consensus 587 ~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spd-g~~Las~s~D~tIkvWDl~kt~~~l---~~l~~~vt~l~ws 662 (1342)
+.|++|++||+.+|++ .+.+. +|...|.++.|+|. .++|++|+.|+++.+.|. +..... -.+...+-.+.|.
T Consensus 263 saD~TV~lWD~~~g~p--~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~-R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKP--KSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC-RDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred CCCceEEEEEcCCCCc--ceehh-hcCCceeEEEecCCCceEEEeccccceEEeeec-cCccccCceEEeccceEEEEec
Confidence 5677999999999994 44443 48889999999985 689999999999999999 532211 1122345567776
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecC--Ceee
Q 000703 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG--RRIR 740 (1342)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g--~~v~ 740 (1342)
|- ....|.++..||+|+-+|++. +.+.
T Consensus 339 ~~---------------------------------------------------se~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 339 PH---------------------------------------------------SENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred CC---------------------------------------------------CceeEEEecCCceEEeeecCCCCCcee
Confidence 32 013466778999999999953 3333
Q ss_pred ccCCCCCCCccccccceEEEEeec---CCEEEEEeCCCcEEEEECCCCceeeecccc---ccEEEEEEecCCCCCCCCCE
Q 000703 741 DFRPKWPSSSFISSDGLITAMAYR---LPHVVMGDRSGNIRWWDVTTGHSSQFSTHR---EGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 741 d~~~~~~~~~~~~~~~~V~~va~d---g~~LasGs~DgtI~lWDl~tg~~~~l~~H~---~~V~~v~fSPd~~g~~~~~~ 814 (1342)
. +..|++.|.++++. -.+|++++.|++|++|++..-..+....|. +...+.++.|+.+ ..
T Consensus 368 t---------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a-----~~ 433 (463)
T KOG0270|consen 368 T---------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA-----FT 433 (463)
T ss_pred E---------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc-----eE
Confidence 2 23688999999993 358999999999999999754332222232 3355666777754 47
Q ss_pred EEEEECCCeEEEEECCCCCcccccc
Q 000703 815 IAVLFHDNTFSVFDLDSQDPLANSL 839 (1342)
Q Consensus 815 Las~s~DgtI~IWDl~t~~~l~~~l 839 (1342)
||.++.-+.++|||+.+..++.+.+
T Consensus 434 la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred EEecCccceEEEeecccChhHHHhh
Confidence 8888888899999999887554443
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.8e-16 Score=187.16 Aligned_cols=228 Identities=17% Similarity=0.295 Sum_probs=168.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC---CcEEEEeeecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCEEEEEEcCCCce
Q 000703 528 AVPLVALGTQSGAVDVVDVSA---NAVTASFSVHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGIN 602 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~t---g~~~~~l~gH~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~ 602 (1342)
+.++||+++.+|.|-+||+.- .+++..|..|+-.|+++.|++-. -+|| |+.|++|++||++...+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliS----------GSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILIS----------GSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEe----------cCCCceEEEEeeecccc
Confidence 678999999999999999975 45566788999999999998754 4454 44567999999987663
Q ss_pred eeeEEeccCCCCCeEEEEEcC-CCCEEEEEECCCCEEEEeccCCcc-eeeeccCceEEEEEcCCCCCCCCCCCCCCcccc
Q 000703 603 RAFRVLQKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPI-MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSL 680 (1342)
Q Consensus 603 ~~l~~l~g~h~~~I~~i~~Sp-dg~~Las~s~D~tIkvWDl~kt~~-~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~ 680 (1342)
+ .+.++ ....|+.|+|+| .+.++++++..|.+++||+ +.+. +..
T Consensus 169 ~--~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl-Rqp~r~~~------------------------------ 214 (839)
T KOG0269|consen 169 K--STFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDL-RQPDRCEK------------------------------ 214 (839)
T ss_pred c--ccccc-cchhhhceeeccCCCceEEEecCCceEEEeec-cCchhHHH------------------------------
Confidence 2 23344 456789999998 4778888888899999998 3321 000
Q ss_pred ccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEE
Q 000703 681 SSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITA 760 (1342)
Q Consensus 681 ~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~ 760 (1342)
.|+.|.|.|.|
T Consensus 215 ---------------------------------------------------------------------k~~AH~GpV~c 225 (839)
T KOG0269|consen 215 ---------------------------------------------------------------------KLTAHNGPVLC 225 (839)
T ss_pred ---------------------------------------------------------------------HhhcccCceEE
Confidence 02246777888
Q ss_pred Eee--cCCEEEEEeCCCcEEEEECCCCc---eeeeccccccEEEEEEecCCCCCCCCCEEEEEE--CCCeEEEEECCCCC
Q 000703 761 MAY--RLPHVVMGDRSGNIRWWDVTTGH---SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLF--HDNTFSVFDLDSQD 833 (1342)
Q Consensus 761 va~--dg~~LasGs~DgtI~lWDl~tg~---~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s--~DgtI~IWDl~t~~ 833 (1342)
+.| ++.+||+|++|+.|+|||+.+.+ .+++. -..+|.+|+|=|... -.||+++ .|..|+|||++.+-
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~-----~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS-----YHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCcc-----chhhhhhccccceEEEEeecccc
Confidence 888 78899999999999999998755 33443 357899999999954 3588764 69999999998764
Q ss_pred cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 834 PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 834 ~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
--..++ ..|. ..+..+.|-.. ++..|.+++.||+|-.=-+.
T Consensus 300 IP~~t~-~eH~--~~vt~i~W~~~-----d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 300 IPYATF-LEHT--DSVTGIAWDSG-----DRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccceee-eccC--ccccceeccCC-----CceeeEeecCccHHHHhhhh
Confidence 111222 4555 56889999763 45578899999997544333
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=2.2e-12 Score=151.86 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=196.0
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeC-CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEe
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQ-SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~-DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s 577 (1342)
+|...|..++++| ++..+++++. |+++++|++.++.....+.+|...|.+++|++++..+..+
T Consensus 153 ~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 153 GHSESVTSLAFSP----------------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred cCcccEEEEEECC----------------CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 4677888999998 4567888875 9999999999888999999999999999999988633222
Q ss_pred cCCcccccCcccCEEEEEEcCCCceeeeE-EeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcce-eeec---
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGINRAFR-VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM-LRSL--- 652 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~-~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~-l~~l--- 652 (1342)
+..++.+++||..++. .+. .+.+ |.... ...|+|++.++++++.|+.+++||+ +.... +..+
T Consensus 217 --------~~~d~~i~~wd~~~~~--~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~ 283 (466)
T COG2319 217 --------GSSDGTIRLWDLSTGK--LLRSTLSG-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGH 283 (466)
T ss_pred --------ecCCCcEEEEECCCCc--EEeeecCC-CCcce-eEeECCCCCEEEEecCCCcEEEeee-cCCCcEEEEEecC
Confidence 1235688899988776 444 3444 55553 3389999999999999999999998 54432 2222
Q ss_pred cCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEE
Q 000703 653 ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1342)
Q Consensus 653 ~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lw 732 (1342)
...+..+.|.|+ ...+++++.|+.+.+|
T Consensus 284 ~~~v~~~~~~~~----------------------------------------------------~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 284 SSSVLSVAFSPD----------------------------------------------------GKLLASGSSDGTVRLW 311 (466)
T ss_pred CccEEEEEECCC----------------------------------------------------CCEEEEeeCCCcEEEE
Confidence 123455555532 3455668888889999
Q ss_pred EecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEE-eCCCcEEEEECCCCce-eeeccccccEEEEEEecCCCC
Q 000703 733 EVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG-DRSGNIRWWDVTTGHS-SQFSTHREGIRRIKFSPVVPG 808 (1342)
Q Consensus 733 dv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasG-s~DgtI~lWDl~tg~~-~~l~~H~~~V~~v~fSPd~~g 808 (1342)
+........... ...|...+..+.+ ++..++.+ ..|+.+++|++..... ..... ...+..+.|++ . .
T Consensus 312 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~ 382 (466)
T COG2319 312 DLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP-D-G 382 (466)
T ss_pred EcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC-C-C
Confidence 886544321111 0134455777777 22455555 7889999999988762 22222 22288999988 5 4
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 809 ~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
..+..+..++.+.+||......... . ..+. ..+....+.++ +. .+++++.++++++|++..
T Consensus 383 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 ----RVVSSGSTDGTVRLWDLSTGSLLRN-L-DGHT--SRVTSLDFSPD----GK--SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----CEEEEecCCCceEEEecccCeeeee-c-cCCC--CcEEEEEECCC----Cc--EEEEecCCCcEEEEeccC
Confidence 4444578999999999988764322 1 1111 46888889886 33 467789999999999885
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=1.1e-15 Score=167.09 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=186.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCEEEEEEcCCCceeeeE
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFR 606 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~ 606 (1342)
.+++|.|+.-|.|||.|+.++++.+.+.+|-.+|+.|.|.|+. .++++|.| ..|++|+++++.+..+-
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVF 174 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEe
Confidence 6899999999999999999999999999999999999999977 45555544 48999999999854433
Q ss_pred EeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCC
Q 000703 607 VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHK 686 (1342)
Q Consensus 607 ~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~ 686 (1342)
.--+.|+..|-++.|+++|.++++++.|.+|++|++ ...+....++. +..|+|....+++
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l-~~~~f~~~lE~---s~~~~~~~t~~pf---------------- 234 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL-NVKEFKNKLEL---SITYSPNKTTRPF---------------- 234 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEec-ChhHHhhhhhh---hcccCCCCccCcC----------------
Confidence 222349999999999999999999999999999999 55544333332 2345544221110
Q ss_pred CccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCC
Q 000703 687 ADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLP 766 (1342)
Q Consensus 687 ~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~ 766 (1342)
|.. .+.+.+..... -|...|-|+.|=|+
T Consensus 235 ----------------------------pt~----------~~~fp~fst~d--------------iHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 235 ----------------------------PTP----------KTHFPDFSTTD--------------IHRNYVDCVRWFGD 262 (385)
T ss_pred ----------------------------Ccc----------ccccccccccc--------------cccchHHHHHHHhh
Confidence 000 01111111111 24556778889888
Q ss_pred EEEEEeCCCcEEEEECC-CC---------c-----eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000703 767 HVVMGDRSGNIRWWDVT-TG---------H-----SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1342)
Q Consensus 767 ~LasGs~DgtI~lWDl~-tg---------~-----~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t 831 (1342)
+++|=|-++.|.+|-.. -+ + +..+.-....|+-|+|+=|.-+ +.||.+...|.|.+||++.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~----~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ----KMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH----HHHhhccCCCcEEEEECCC
Confidence 99999999999999872 11 1 2234455667888888766222 5678888899999999998
Q ss_pred CCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 832 QDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 832 ~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
.++...+-...+..+..|...+|+.| +. +|+...+|++|--||..
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~d----gs--~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRD----GS--ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeeccc----Cc--EEEEEeCCCcEEEEEee
Confidence 88632222122223577999999987 44 57788999999888854
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=1.3e-15 Score=166.40 Aligned_cols=260 Identities=15% Similarity=0.205 Sum_probs=184.6
Q ss_pred CCCCCCCCceEeCCC---C--eEEE-EcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC
Q 000703 21 PPSRNNFGSADLSPS---G--LLAF-ASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1342)
Q Consensus 21 ~~~~~~~~a~~~s~~---g--llA~-gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1342)
+.+..+.-.++|+-+ | ++|. |..+.|+|.|+.++++...+.+|.. .|+.++|.|+.
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----------sINeik~~p~~------- 147 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----------SINEIKFHPDR------- 147 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCc-----------cchhhhcCCCC-------
Confidence 335566777888642 3 5554 5568999999999999999999998 99999999974
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEec-CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE-
Q 000703 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLWID-PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM- 172 (1342)
Q Consensus 95 ~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~-~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i- 172 (1342)
.++|+||+.|..||+||++++.++..|. ..||.+ .|.++.|++++ +.+++++-|.+|++|++.+.+..
T Consensus 148 ------~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~g---d~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 148 ------PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDG---DRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred ------CcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCC---CeeeccCCcceEEEEecChhHHhh
Confidence 5799999999999999999999999885 367888 99999999988 79999999999999999743210
Q ss_pred --------------------------E-EEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe
Q 000703 173 --------------------------W-KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ 225 (1342)
Q Consensus 173 --------------------------~-~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~ 225 (1342)
. +.+.|...|-|++|- +..+.+-|.++.|.+|... +-..++ .+..-.
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pg-kl~e~~--~~vkp~ 291 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPG-KLEESI--HNVKPP 291 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecc-hhhhhh--hccCCC
Confidence 0 111223334444442 3556666778899998641 111110 000000
Q ss_pred cC-cchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCce--eEEEecCCCccceEE
Q 000703 226 TD-CTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP--LFSAALPRGCAKFLD 302 (1342)
Q Consensus 226 ~~-~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~--l~~~~l~~~~~~~~~ 302 (1342)
.. .+-+.+.. -..-..+.+.++|-|-++.|+.+...|.|.+|||+.... ..++....+...+.+
T Consensus 292 es~~Ti~~~~~-------------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ 358 (385)
T KOG1034|consen 292 ESATTILGEFD-------------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ 358 (385)
T ss_pred ccceeeeeEec-------------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeee
Confidence 00 00000000 001123456788889899999999999999999997655 233333445567888
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 303 VLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 303 v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
..++.||..|+..-+|++|.-||+.
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999999975
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-15 Score=160.36 Aligned_cols=258 Identities=15% Similarity=0.174 Sum_probs=187.8
Q ss_pred cCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCC
Q 000703 18 LPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST 95 (1342)
Q Consensus 18 lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~ 95 (1342)
|++.+-..+..|+.||+-| +||.|+ ++.|+|||-.+...-.+|.+|.. +|++++||||
T Consensus 17 l~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-----------pi~sl~WS~d--------- 76 (405)
T KOG1273|consen 17 LTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-----------PITSLCWSRD--------- 76 (405)
T ss_pred hceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc-----------ceeEEEecCC---------
Confidence 3444433447899999999 899987 57999999999999899999998 9999999987
Q ss_pred CCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecC-----------------------------
Q 000703 96 EPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSK----------------------------- 146 (1342)
Q Consensus 96 ~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~----------------------------- 146 (1342)
|+.|.|+++|..|++||+..|.++..+.+. . ||..+.|.|-.
T Consensus 77 -----gr~LltsS~D~si~lwDl~~gs~l~rirf~---s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 77 -----GRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred -----CCEeeeecCCceeEEEeccCCCceeEEEcc---C-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC
Confidence 588999999999999999999987766442 1 44444442210
Q ss_pred ---------------CCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCC-CceEEEEecCCCCCEEEEEeCCCeEEEEEec
Q 000703 147 ---------------PDSFVLAAINGPSVLSLYNTTSASCMWKYDASP-EYLSCIRRNPFDARHFCVLGLKGLLLSVRVL 210 (1342)
Q Consensus 147 ---------------~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~-~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~ 210 (1342)
..++++.+|.+.|-+-++|+.|-+++..+.-.. ..|..+.|+- .++.|+.-+.|..|+.++.+
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehh
Confidence 013677788888899999999888887655433 6777888876 89999999999999998864
Q ss_pred C-CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc-CCeEEEEEccCCcee
Q 000703 211 G-QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF-PRELVVFDLQYETPL 288 (1342)
Q Consensus 211 ~-~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~-d~~I~iwDl~t~~~l 288 (1342)
. ..+ ++.-. ....+++....+. ..-..|+||.||..+..++. ...++||.-.+|.++
T Consensus 227 di~~~----~r~~e----~e~~~K~qDvVNk-------------~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 227 DIDDE----GRDGE----VEPEHKLQDVVNK-------------LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred hhccc----CccCC----cChhHHHHHHHhh-------------hhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 2 100 00000 0011222221111 12345799999999888774 578999999999998
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 289 FSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
..+...+| .-..+|.+.|-+..|++. +.|+|+||....
T Consensus 286 KILhG~kg-E~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 286 KILHGTKG-EELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eeecCCch-hheeecccccceeeeeec-cCCceEEEEeec
Confidence 76643322 456778888888888888 789999998653
No 156
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-13 Score=162.98 Aligned_cols=304 Identities=14% Similarity=0.181 Sum_probs=190.8
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC--C--cEEEEeeecCCCeEEEEEcCCCcEEE
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA--N--AVTASFSVHNGTVRGLRWLGNSRLVS 575 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t--g--~~~~~l~gH~~~V~~l~fs~d~~llS 575 (1342)
|.-.+++.+++| .+..+|+|..||.|.+|.-.. + .-.+.|.=|...|.+++|+++|..+.
T Consensus 204 Htf~~t~~~~sp----------------n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll 267 (792)
T KOG1963|consen 204 HTFNITCVALSP----------------NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL 267 (792)
T ss_pred hcccceeEEecc----------------ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe
Confidence 555689999998 589999999999999998532 1 23456788999999999999985543
Q ss_pred EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP 655 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~ 655 (1342)
+|+..+.+.+|-+.|++.+.+-. -.++|..+.+|||+.+.+..-.|+.|.+-.+ .+.....+..+
T Consensus 268 ---------SGG~E~VLv~Wq~~T~~kqfLPR----Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~-~dl~~k~tIsg- 332 (792)
T KOG1963|consen 268 ---------SGGREGVLVLWQLETGKKQFLPR----LGSPILHIVVSPDSDLYSLVLEDNQIHLIKA-SDLEIKSTISG- 332 (792)
T ss_pred ---------ecccceEEEEEeecCCCcccccc----cCCeeEEEEEcCCCCeEEEEecCceEEEEec-cchhhhhhccC-
Confidence 35556689999999988333321 3479999999999999999999999999877 34433333221
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
+. |..... +++. ..+......++-...++.....|+|..||+.
T Consensus 333 ---i~--~~~~~~------k~~~--------------------------~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 333 ---IK--PPTPST------KTRP--------------------------QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred ---cc--CCCccc------cccc--------------------------cccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 10 110000 0000 0000001112222345677788888888873
Q ss_pred C-CeeeccC---CCCCCCccccccceEEEEee--cCCEEEEEe--------C--CCcEEEEECCCCc----eee--eccc
Q 000703 736 G-RRIRDFR---PKWPSSSFISSDGLITAMAY--RLPHVVMGD--------R--SGNIRWWDVTTGH----SSQ--FSTH 793 (1342)
Q Consensus 736 g-~~v~d~~---~~~~~~~~~~~~~~V~~va~--dg~~LasGs--------~--DgtI~lWDl~tg~----~~~--l~~H 793 (1342)
. ..+..+. .....+. ..+...+++++. .|.+++++. . .-.+|+|-..... +.+ ..-|
T Consensus 376 td~~i~~~~v~~~n~~~~~-~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 376 TDSTIYKLQVCDENYSDGD-VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred ccceeeeEEEEeecccCCc-ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 3 2221110 0000010 012223556655 788888864 2 3467889776543 222 2568
Q ss_pred cccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCccc------ccccCCCCCCCcEEEEEEeCCCCCCCCCeEE
Q 000703 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA------NSLLQPQFPGTLVLELDWLPTRTDKNDPLVL 867 (1342)
Q Consensus 794 ~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~------~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L 867 (1342)
...+....|.+... +.+.++++.||.++||-+...+.+. .-...++.+..++..++|+.| |. |
T Consensus 455 ~~~~vat~~~~~~r----s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gs---l 523 (792)
T KOG1963|consen 455 GNAFVATIFLNPTR----SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GS---L 523 (792)
T ss_pred CceeEEEEEecCcc----cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC----Cc---E
Confidence 88888888776521 1378899999999999874332211 011123233466888999987 43 5
Q ss_pred EEEeCCCcEEEEEccC
Q 000703 868 CIAGADSSFRLIEVNT 883 (1342)
Q Consensus 868 ~s~s~DgtIrvWdi~~ 883 (1342)
++.|.|++|.+||-..
T Consensus 524 la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecCCEEEEecCCC
Confidence 6889999999999875
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=169.26 Aligned_cols=165 Identities=14% Similarity=0.196 Sum_probs=137.1
Q ss_pred ccCCCCCCCCCCceEeCC--CCeEEEE-cCCeEEEEeCCCcce---eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcc
Q 000703 17 MLPGPPSRNNFGSADLSP--SGLLAFA-SGSSISILDSRSLQL---ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRC 90 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~--~gllA~g-s~~~V~v~d~~s~~~---~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~ 90 (1342)
+..| |....-++|||| .|.|++| |.+.|++|.+.++.- -+.|.+|+. .|--++|||.-
T Consensus 206 t~~g--hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-----------SVEDLqWSptE--- 269 (440)
T KOG0302|consen 206 TFNG--HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-----------SVEDLQWSPTE--- 269 (440)
T ss_pred Eecc--cCccceeeecccccccccccCccccceEeeeeccCceeecCcccccccc-----------chhhhccCCcc---
Confidence 4444 555567999999 5666666 668899999988753 345778998 89999999963
Q ss_pred ccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC---
Q 000703 91 DLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT--- 167 (1342)
Q Consensus 91 ~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~--- 167 (1342)
...+|||+.||.|+|||++.+.....+..+.|.. -|+-|.|+..- .+||+|+.||+++|||++
T Consensus 270 ----------~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s-DVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 270 ----------DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS-DVNVISWNRRE---PLLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred ----------CceEEeeecCceEEEEEecCCCccceeEeeccCC-ceeeEEccCCc---ceeeecCCCceEEEEEhhhcc
Confidence 4689999999999999999984333222367776 89999998765 599999999999999987
Q ss_pred CCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 168 SASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 168 tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
.|+++..+++|..+|+|+.|+|.+...|+++|.|..|.+||++-
T Consensus 336 ~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 336 SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 57788999999999999999999999999999999999999865
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=9.5e-16 Score=190.31 Aligned_cols=253 Identities=18% Similarity=0.210 Sum_probs=192.7
Q ss_pred cCCCCCCC-CCCceEeCCC-----CeEEEEc-CCeEEEEeCCCc------ceeEeecCCCCCCCCCCCCCCCcEEEEEEe
Q 000703 18 LPGPPSRN-NFGSADLSPS-----GLLAFAS-GSSISILDSRSL------QLISTIPIPPPTSAGSVASLSPFVTAVKWI 84 (1342)
Q Consensus 18 lpg~~~~~-~~~a~~~s~~-----gllA~gs-~~~V~v~d~~s~------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s 84 (1342)
..|....+ .++.++|++. |+||.|. ++.|.+||+... .++.++..|++ .|..+.|.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-----------~V~gLDfN 125 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-----------PVLGLDFN 125 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-----------ceeeeecc
Confidence 34444433 3689999864 4688876 579999999762 24677889999 99999999
Q ss_pred cCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEE
Q 000703 85 PITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1342)
Q Consensus 85 p~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1342)
|.. +.+||||+.||.|.|||+...+....+....-.. .|.+|+|...- .++||+++.+++..||
T Consensus 126 ~~q-------------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~-eI~~lsWNrkv--qhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 126 PFQ-------------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPS-EIKCLSWNRKV--SHILASGSPSGRAVIW 189 (1049)
T ss_pred ccC-------------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc-cceEeccchhh--hHHhhccCCCCCceec
Confidence 874 6799999999999999998755444431111223 68999998754 4899999999999999
Q ss_pred ECCCCeEEEEEeCCCC--ceEEEEecCCCCCEEEEEeCC---CeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000703 165 NTTSASCMWKYDASPE--YLSCIRRNPFDARHFCVLGLK---GLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1342)
Q Consensus 165 d~~tg~~i~~~~~~~~--~v~~v~fsP~d~~~la~~s~d---G~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1342)
|++..+++-++..+.. .++.++|+|.+..++++++.| -.|.+||++-.. ..++.+++
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---------------sP~k~~~~--- 251 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---------------SPLKILEG--- 251 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---------------Cchhhhcc---
Confidence 9998888877765433 477999999888999988765 377888864410 01111222
Q ss_pred cccCCCCCCCCcCccceEEEEEccCC-CceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCC-EEEEEeC
Q 000703 240 AGAASLSPASGLFPLYMVKFTFSPHW-RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHL 317 (1342)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~aFSpdg-~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~ 317 (1342)
|...++++.+++.+ +.+++++-|+.|.+|+.++|+.+..++. +...+..+.|||-.. .+++++-
T Consensus 252 ------------H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 252 ------------HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred ------------cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhhee
Confidence 33358899999987 7888888999999999999999988764 446678899998555 8899999
Q ss_pred CCcEEEEEccCC
Q 000703 318 DGKLSIWRRKEG 329 (1342)
Q Consensus 318 DgtI~lW~~~~g 329 (1342)
||+|.|..+..+
T Consensus 318 dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 318 DGKISIYSLQGT 329 (1049)
T ss_pred ccceeeeeeecC
Confidence 999999998643
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.8e-14 Score=169.10 Aligned_cols=261 Identities=14% Similarity=0.207 Sum_probs=193.2
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEeeecCCCeEEEEEcCCCcEEEEe
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~gH~~~V~~l~fs~d~~llS~s 577 (1342)
+|...-|.|.+.| +|..|.+.+.||.|++|+..+- ....++..|...|.+++-..+ +|++++
T Consensus 11 aht~G~t~i~~d~----------------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDP----------------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGS 73 (933)
T ss_pred hccCceEEEEEcC----------------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEee
Confidence 4777888999988 5789999999999999997655 444555568888888876554 566543
Q ss_pred cCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceee---eccC
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR---SLAL 654 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~---~l~~ 654 (1342)
.+++|.++.+.+|+.-.+-. .-.-|++.++|+.+|+++|.||.|-.|++-++ ......+ .+..
T Consensus 74 ----------~~~tv~~y~fps~~~~~iL~---Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~-~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 74 ----------EQNTVLRYKFPSGEEDTILA---RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL-DDSSQEKVLRGHDA 139 (933)
T ss_pred ----------ccceEEEeeCCCCCccceee---eeeccceEEEEecCCcEEEeecCceeEEEEec-cccchheeecccCC
Confidence 35699999988876321211 14568999999999999999999999999998 4544333 3345
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe
Q 000703 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1342)
Q Consensus 655 ~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv 734 (1342)
+|.++.++|. ++.||+.+-||.|++|++
T Consensus 140 pVl~l~~~p~----------------------------------------------------~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 140 PVLQLSYDPK----------------------------------------------------GNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ceeeeeEcCC----------------------------------------------------CCEEEEEecCceEEEEEc
Confidence 6777777643 578999999999999999
Q ss_pred cCCeee-ccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeee--ccccccEEEEEEecCCCC
Q 000703 735 HGRRIR-DFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQF--STHREGIRRIKFSPVVPG 808 (1342)
Q Consensus 735 ~g~~v~-d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l--~~H~~~V~~v~fSPd~~g 808 (1342)
..+.+. .+....+...+.. ...++.++| +|-.++.-..|+.|++++..++. ...+ .-|...+..+.|||. |
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~-s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn--G 244 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFIL-SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN--G 244 (933)
T ss_pred ccchhhhhcccCCccccccc-cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC--C
Confidence 655432 1111122222211 245677889 87788888999999999998876 3333 344555999999999 6
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCC
Q 000703 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1342)
Q Consensus 809 ~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d 857 (1342)
+|||+++.||.|-|||+++-+. |.....|..++|.|.
T Consensus 245 ----~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 245 ----KYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPN 281 (933)
T ss_pred ----cEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCC
Confidence 8999999999999999998441 322357899999987
No 160
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-13 Score=149.74 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=89.3
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC--CeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL--RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAA 154 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~--g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas 154 (1342)
-|++|.|-+ .|+++|+|+.|++|+|||..+ |..-.+-+-..|.+ .|.-+.|.+-. -|+++|+
T Consensus 15 lihdVs~D~--------------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPE-fGqvvA~ 78 (361)
T KOG2445|consen 15 LIHDVSFDF--------------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPE-FGQVVAT 78 (361)
T ss_pred eeeeeeecc--------------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCcc-ccceEEE
Confidence 899999874 589999999999999999644 33222222256777 99999998753 3599999
Q ss_pred EeCCCeEEEEECC-----CCeEEE----EEeCCCCceEEEEecCC-CCCEEEEEeCCCeEEEEEe
Q 000703 155 INGPSVLSLYNTT-----SASCMW----KYDASPEYLSCIRRNPF-DARHFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 155 ~s~d~~i~lWd~~-----tg~~i~----~~~~~~~~v~~v~fsP~-d~~~la~~s~dG~v~~~d~ 209 (1342)
++.|++++||.=+ .....| ++......|+.+.|.|+ -+-+||+++.||++++++.
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 9999999999742 111223 34444678999999997 5678899999999999975
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.5e-14 Score=163.36 Aligned_cols=333 Identities=18% Similarity=0.175 Sum_probs=210.6
Q ss_pred eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCC
Q 000703 57 ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG 136 (1342)
Q Consensus 57 ~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~ 136 (1342)
...+.||++ .|.+|.-.| .|.+||||+.||+|+||.+.+|+|+..+.+.+ .
T Consensus 393 ~lvyrGHtg-----------~Vr~iSvdp--------------~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~ 443 (733)
T KOG0650|consen 393 ALVYRGHTG-----------LVRSISVDP--------------SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----E 443 (733)
T ss_pred eeeEeccCC-----------eEEEEEecC--------------CcceeeecCCCCcEEEEEeecceEEEEEeecc----e
Confidence 346789998 899998776 37899999999999999999999999886643 7
Q ss_pred eeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccc
Q 000703 137 IQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDE 216 (1342)
Q Consensus 137 V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~ 216 (1342)
|.+++|.|.++. -+||++-+.. +.|-|..=|+.+..... .+.+... |-. ...++.+..|.-..
T Consensus 444 I~~vaw~P~~~~-~vLAvA~~~~-~~ivnp~~G~~~e~~~t-~ell~~~---~~~------~~p~~~~~~W~~~~----- 506 (733)
T KOG0650|consen 444 IRSVAWNPLSDL-CVLAVAVGEC-VLIVNPIFGDRLEVGPT-KELLASA---PNE------SEPDAAVVTWSRAS----- 506 (733)
T ss_pred eEEEEecCCCCc-eeEEEEecCc-eEEeCccccchhhhcch-hhhhhcC---CCc------cCCcccceeechhh-----
Confidence 999999998753 5667666555 66667665644322111 1111111 000 01234555553110
Q ss_pred eeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc---CCeEEEEEccCCceeEEEec
Q 000703 217 VVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF---PRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 217 ~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~---d~~I~iwDl~t~~~l~~~~l 293 (1342)
+.++++..-. ...++..+.++.++..|..++++.. .+.|.|.+|.-+... .+.
T Consensus 507 --------------~~e~~~~v~~--------~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF 562 (733)
T KOG0650|consen 507 --------------LDELEKGVCI--------VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPF 562 (733)
T ss_pred --------------hhhhccceEE--------EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--Cch
Confidence 0011100000 0012335788999999999999975 467999999866554 333
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhc
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~ 373 (1342)
....+.++.+.|-|-..+|+.+.. ..|||+|....+.+..+ ++ |. -.|..+++.
T Consensus 563 ~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL------~t--g~----kwiS~msih------------- 616 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL------LT--GS----KWISSMSIH------------- 616 (733)
T ss_pred hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH------hc--CC----eeeeeeeec-------------
Confidence 344466778888888887776654 57999998655433222 11 00 011122222
Q ss_pred CCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCc
Q 000703 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1342)
Q Consensus 374 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~ 453 (1342)
.+|..|+.++.|+++..+|+.-... + .
T Consensus 617 -------------------------p~GDnli~gs~d~k~~WfDldlssk------------------------P-y--- 643 (733)
T KOG0650|consen 617 -------------------------PNGDNLILGSYDKKMCWFDLDLSSK------------------------P-Y--- 643 (733)
T ss_pred -------------------------CCCCeEEEecCCCeeEEEEcccCcc------------------------h-h---
Confidence 2367899999999999888753311 1 0
Q ss_pred CcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000703 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1342)
Q Consensus 454 ~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llA 533 (1342)
+ .|.-|...+++|+|++ .-+|+|
T Consensus 644 -----------k------------------------------~lr~H~~avr~Va~H~----------------ryPLfa 666 (733)
T KOG0650|consen 644 -----------K------------------------------TLRLHEKAVRSVAFHK----------------RYPLFA 666 (733)
T ss_pred -----------H------------------------------Hhhhhhhhhhhhhhcc----------------ccceee
Confidence 0 0123678899999998 368999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCC
Q 000703 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPER 613 (1342)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~ 613 (1342)
+|+.||++.|+.-. +..-| .. |-+ ..++..+++ |.
T Consensus 667 s~sdDgtv~Vfhg~---VY~Dl------------~q--------------------npl---------iVPlK~L~g-H~ 701 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGM---VYNDL------------LQ--------------------NPL---------IVPLKRLRG-HE 701 (733)
T ss_pred eecCCCcEEEEeee---eehhh------------hc--------------------CCc---------eEeeeeccC-ce
Confidence 99999999998631 11000 00 011 113444444 33
Q ss_pred ----CCeEEEEEcCCCCEEEEEECCCCEEEE
Q 000703 614 ----APIRALRASSSGRYLLILFRDAPVEVW 640 (1342)
Q Consensus 614 ----~~I~~i~~Spdg~~Las~s~D~tIkvW 640 (1342)
-.|-.+.|+|..-+|.+++.|++|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 247788899999999999999999998
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=1.2e-14 Score=162.93 Aligned_cols=275 Identities=18% Similarity=0.159 Sum_probs=181.7
Q ss_pred CCCCceEeCCCC--eEEEEc-CCeEEEEeCCCcc---------eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 25 NNFGSADLSPSG--LLAFAS-GSSISILDSRSLQ---------LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 25 ~~~~a~~~s~~g--llA~gs-~~~V~v~d~~s~~---------~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
..+..+++.+++ .+|+|. +..|+||-....+ .+.+|..|.. .|++|+|+|+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-----------aVN~vRf~p~------ 76 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-----------AVNVVRFSPD------ 76 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc-----------eeEEEEEcCC------
Confidence 457889998875 689874 6799999875421 3578999998 9999999986
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCC--------C-----C-eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCC
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDFR--------L-----R-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP 158 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~~--------~-----g-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d 158 (1342)
|.+||||+++|+|.+|-.. + . ..+....+.+|.+ .|.+++|+|++ .++++++-|
T Consensus 77 --------gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~---~~l~s~s~d 144 (434)
T KOG1009|consen 77 --------GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDS---NFLVSGSVD 144 (434)
T ss_pred --------cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCC---ceeeeeecc
Confidence 5789999999999999765 2 1 1222222567888 99999999987 899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcc-cc----e---------eeeeEEE
Q 000703 159 SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE-DE----V---------VVKELQI 224 (1342)
Q Consensus 159 ~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~-~~----~---------~~k~~~i 224 (1342)
+++++||+..|..+..+..|...+..++|+| -...+++-+.|...+.+...-..- .. + ..+.+..
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 9999999999999988888888999999999 667777777665333322211000 00 0 0111111
Q ss_pred ecCcc---hhhhhh------------hhhccc-----------cC--CCCCC--CCcCccceEEEEEccC----------
Q 000703 225 QTDCT---ELLKLE------------RELSAG-----------AA--SLSPA--SGLFPLYMVKFTFSPH---------- 264 (1342)
Q Consensus 225 ~~~~~---~l~~l~------------~~~~~~-----------s~--~~~p~--~~~~~~~v~~~aFSpd---------- 264 (1342)
.+|.+ -..|+. +..... ++ -.+|+ ........+.+.|+|=
T Consensus 224 fhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~ 303 (434)
T KOG1009|consen 224 FHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSE 303 (434)
T ss_pred eecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccc
Confidence 11111 001110 000000 00 00110 0000011233444441
Q ss_pred -------CCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 265 -------WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 265 -------g~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
.|.+...+..+.|.|||.++-.++..+.- =+..++.++++++||.+|+..|.||-..+--.+..+
T Consensus 304 ~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 304 KFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccccccccceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 24456666788999999999888766532 146788999999999999999999998876665544
No 163
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=8.3e-16 Score=181.77 Aligned_cols=231 Identities=13% Similarity=0.153 Sum_probs=184.6
Q ss_pred CCCCCCceEeCCCC-eEEEEcCC-eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCC
Q 000703 23 SRNNFGSADLSPSG-LLAFASGS-SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSS 100 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs~~-~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~ 100 (1342)
|.-.+++.-.-..+ .++.|... .+-+|...-.-.+..|.+|.. .|.+|.|.++
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-----------pIeSl~f~~~-------------- 81 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-----------PIESLTFDTS-------------- 81 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC-----------cceeeecCcc--------------
Confidence 44467777764445 67776554 555888766666777999998 8999999976
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
-.+||.|..+|+|++||+..+..+++| .||.. .+..+.|.|.+ .+.|+++.|..+++||.+.-.|.+.+.+|..
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtL--tgh~~-~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTL--TGHLL-NITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhh--hcccc-Ccceeeeccce---EEeccccccccceehhhhccCceeeecCCcc
Confidence 467999999999999999999988874 78888 89999999988 8889999999999999997778999998888
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
.+.+++|+| |++.++.++.|..+.+||..... ..++| ..+...+.++.
T Consensus 156 vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk----~~~ef---------------------------~~~e~~v~sle 203 (825)
T KOG0267|consen 156 VVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGK----LSKEF---------------------------KSHEGKVQSLE 203 (825)
T ss_pred eeEEEeecC-CCceeeccCCcceeeeecccccc----ccccc---------------------------ccccccccccc
Confidence 999999999 99999999999999999863311 01111 11223455667
Q ss_pred EccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCC
Q 000703 261 FSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLD 318 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~D 318 (1342)
|+|..--++.++.|++|++||+++-+.+.... ....++....|.|++..++||-.+
T Consensus 204 ~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCchhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeeecCCceeeecCchh
Confidence 99988788888999999999999888776543 224677888999999999988543
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=3.1e-14 Score=161.92 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=187.0
Q ss_pred eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCC------------C--------
Q 000703 37 LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST------------E-------- 96 (1342)
Q Consensus 37 llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~------------~-------- 96 (1342)
|.+..++..|+|||..+......+..|++ .+.|.++.|+..... ...|. .
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~---------~pg~~s~~w~~~n~l-vvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTA---------EPGDFSFNWQRRNFL-VVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCC---------CCcceeeeccccceE-EEeecCCceeEEEecccCCCCcccee
Confidence 44545567899999998877666666664 246888888876531 11110 0
Q ss_pred ------------CCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEE
Q 000703 97 ------------PGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1342)
Q Consensus 97 ------------~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1342)
-.....+++||+..|.|+|||++...+.+. +.+|+. .|+++.+...+ .+||+++..|.|.|-
T Consensus 75 ~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~--lkdh~s-tvt~v~YN~~D---eyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF--LKDHQS-TVTYVDYNNTD---EYIASVSDGGDIIIH 148 (673)
T ss_pred eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh--ccCCcc-eeEEEEecCCc---ceeEEeccCCcEEEE
Confidence 023458999999999999999985444444 588987 99999998765 899999999999999
Q ss_pred ECCCCeEEEEEeCC-CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000703 165 NTTSASCMWKYDAS-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1342)
Q Consensus 165 d~~tg~~i~~~~~~-~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1342)
++.|+.....+... .+.+.-+.|+|+....|.+++.+|.|.+||+.+..+.-. |.
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--------------------~~---- 204 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--------------------AS---- 204 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc--------------------hh----
Confidence 99998876666543 456678999999888999999999999999988644111 11
Q ss_pred CCCCCCCcCccceEEEEEccCCC-ceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEE
Q 000703 244 SLSPASGLFPLYMVKFTFSPHWR-HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322 (1342)
Q Consensus 244 ~~~p~~~~~~~~v~~~aFSpdg~-~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~ 322 (1342)
.+|...+..+||||... .++++++|..|.+||.........+... .|+..|+|.++|-+|+.|...|.|.
T Consensus 205 ------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 205 ------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred ------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEE
Confidence 01112256679999875 4567789999999999877665555433 5788999999999999999999999
Q ss_pred EEEccCC-ceeeeE
Q 000703 323 IWRRKEG-EQVHVM 335 (1342)
Q Consensus 323 lW~~~~g-~~~~~~ 335 (1342)
-+|++.- ..+.++
T Consensus 276 ~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 276 AYDMRSTKAPVAVR 289 (673)
T ss_pred EEecccCCCCceEe
Confidence 9998743 344444
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=1.6e-11 Score=143.68 Aligned_cols=147 Identities=10% Similarity=0.132 Sum_probs=107.0
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.|..|+|.||| ..|+.+. +.++.|+|+.+|..++++ ++|.. .|++++|+.+| +..|+|+
T Consensus 14 ci~d~afkPDG--------------sqL~lAA-g~rlliyD~ndG~llqtL--KgHKD-tVycVAys~dG---krFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDG--------------TQLILAA-GSRLLVYDTSDGTLLQPL--KGHKD-TVYCVAYAKDG---KRFASGS 72 (1081)
T ss_pred chheeEECCCC--------------ceEEEec-CCEEEEEeCCCccccccc--ccccc-eEEEEEEccCC---ceeccCC
Confidence 58899999986 2233332 347999999999999984 89988 99999999988 8999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000703 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1342)
.|..+.+|+..- +-+.++. |.+.|.|++|+| -..+|++++..-+- +|. + +...+.+
T Consensus 73 aDK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP-~~h~LasCsLsdFg-lWS--~------------------~qK~V~K 128 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL-EGILKYS-HNDAIQCMSFNP-ITHQLASCSLSDFG-LWS--P------------------EQKSVSK 128 (1081)
T ss_pred CceeEEEecccc-cceeeec-cCCeeeEeecCc-hHHHhhhcchhhcc-ccC--h------------------hhhhHHh
Confidence 999999999752 2233444 378999999999 67788887764322 231 1 0011111
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEE
Q 000703 237 ELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFD 281 (1342)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwD 281 (1342)
+- ....|..|++..||..++.+..+|+|.|-+
T Consensus 129 ~k-------------ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 129 HK-------------SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred hh-------------hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 10 112588899999999999998888887764
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.60 E-value=8.4e-14 Score=158.09 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=192.6
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc----EEEEeeecCCCeEEEEEcCCC--cE
Q 000703 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA----VTASFSVHNGTVRGLRWLGNS--RL 573 (1342)
Q Consensus 500 ~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~----~~~~l~gH~~~V~~l~fs~d~--~l 573 (1342)
+..+|++++|+|. ...++||+|..-|+|-+||+.+.+ -...+..|+.+|.+|.|+|.+ ++
T Consensus 185 ~~~Rit~l~fHPt--------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFHPT--------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccceEEEEeccc--------------CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 6789999999993 135799999999999999995322 345678999999999999854 88
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcce----e
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM----L 649 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~----l 649 (1342)
++.|+| ++|++-|++++....+-.+. .....+..+.|+.+.+-++.+..=|.+.+||+ +++.- +
T Consensus 251 ~ssSyD----------GtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~-R~~~s~~~~~ 318 (498)
T KOG4328|consen 251 YSSSYD----------GTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL-RTDGSEYENL 318 (498)
T ss_pred eeeccC----------ceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEe-ecCCccchhh
Confidence 887765 59999999887644433322 24567788999988888887776678999999 55422 2
Q ss_pred eeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCE
Q 000703 650 RSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1342)
Q Consensus 650 ~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI 729 (1342)
+..+..|+++++.|- ....||+++.|++.
T Consensus 319 ~lh~kKI~sv~~NP~---------------------------------------------------~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 319 RLHKKKITSVALNPV---------------------------------------------------CPWFLATASLDQTA 347 (498)
T ss_pred hhhhcccceeecCCC---------------------------------------------------CchheeecccCcce
Confidence 222235666766643 13568999999999
Q ss_pred EEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECC---CC-c-eeee---ccccccEEE
Q 000703 730 GVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVT---TG-H-SSQF---STHREGIRR 799 (1342)
Q Consensus 730 ~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~---tg-~-~~~l---~~H~~~V~~ 799 (1342)
++||++.-.-+. .+.+ ....|...|.+..| +|-.|++-+.|.+|+|||.. .. . ..++ ..|..|++.
T Consensus 348 kIWD~R~l~~K~-sp~l---st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 348 KIWDLRQLRGKA-SPFL---STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeehhhhcCCC-Ccce---ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccc
Confidence 999985322110 0001 11357778888888 44449999999999999984 11 1 1222 223344443
Q ss_pred --EEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCC-CcEE-EEEEeCCCCCCCCCeEEEEEeCCCc
Q 000703 800 --IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPG-TLVL-ELDWLPTRTDKNDPLVLCIAGADSS 875 (1342)
Q Consensus 800 --v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~-~~V~-~l~ws~d~~~~g~~~~L~s~s~Dgt 875 (1342)
..|.|+. ..++++-+-..|-|+|-..++ ++..+ |.+. ..|. -..|+|. +.. +++.++.-|.
T Consensus 424 fKA~W~P~~------~li~vg~~~r~IDv~~~~~~q-~v~el---~~P~~~tI~~vn~~HP~----~~~-~~aG~~s~Gk 488 (498)
T KOG4328|consen 424 FKAAWDPDY------NLIVVGRYPRPIDVFDGNGGQ-MVCEL---HDPESSTIPSVNEFHPM----RDT-LAAGGNSSGK 488 (498)
T ss_pred hhheeCCCc------cEEEEeccCcceeEEcCCCCE-Eeeec---cCccccccccceeeccc----ccc-eeccCCccce
Confidence 4699983 578888788889999988776 22222 2211 1232 3579997 342 3444566777
Q ss_pred EEEEEc
Q 000703 876 FRLIEV 881 (1342)
Q Consensus 876 IrvWdi 881 (1342)
|.||.-
T Consensus 489 i~vft~ 494 (498)
T KOG4328|consen 489 IYVFTN 494 (498)
T ss_pred EEEEec
Confidence 777753
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=8.2e-14 Score=157.92 Aligned_cols=254 Identities=16% Similarity=0.182 Sum_probs=176.9
Q ss_pred Cccccc--cccCCCCCCCCCCceEeCC-------CC-eEEEEc-CCeEEEEeCCCc---ceeEee---------------
Q 000703 10 DSWDCN--FMLPGPPSRNNFGSADLSP-------SG-LLAFAS-GSSISILDSRSL---QLISTI--------------- 60 (1342)
Q Consensus 10 ~~~~~~--~~lpg~~~~~~~~a~~~s~-------~g-llA~gs-~~~V~v~d~~s~---~~~~~l--------------- 60 (1342)
+.|.|- ++||..| -|+.|-- .| ++|.|+ +..|.|||+.=. ...-+|
T Consensus 162 ~nlYvHHD~ilpafP-----LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~ 236 (463)
T KOG0270|consen 162 ENLYVHHDFILPAFP-----LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRS 236 (463)
T ss_pred cceeEecceeccCcc-----hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccc
Confidence 456664 5677653 3665521 13 899986 679999997421 111122
Q ss_pred ---cCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCe
Q 000703 61 ---PIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGI 137 (1342)
Q Consensus 61 ---~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V 137 (1342)
.+|+. .|-.+.|...- ...||||+.|.+|++||+.+|++...+. -|.+ .|
T Consensus 237 ~~~~gHTd-----------avl~Ls~n~~~-------------~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k-~V 289 (463)
T KOG0270|consen 237 NSASGHTD-----------AVLALSWNRNF-------------RNVLASGSADKTVKLWDVDTGKPKSSIT--HHGK-KV 289 (463)
T ss_pred cccccchH-----------HHHHHHhcccc-------------ceeEEecCCCceEEEEEcCCCCcceehh--hcCC-ce
Confidence 26776 78888887653 4689999999999999999999998864 4667 99
Q ss_pred eEEEEeecCCCCcEEEEEeCCCeEEEEECCC---CeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000703 138 QDLCWIVSKPDSFVLAAINGPSVLSLYNTTS---ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1342)
Q Consensus 138 ~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t---g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~ 214 (1342)
+.+.|.|.. +.+|++++.|+++.|.|.+. --.-|++.+ .|-.++|+|+....+.++..||+|+-+|.+....
T Consensus 290 q~l~wh~~~--p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g---~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 290 QTLEWHPYE--PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG---EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred eEEEecCCC--ceEEEeccccceEEeeeccCccccCceEEecc---ceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 999999987 48999999999999999983 224576654 5677899999999999999999999999865311
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc-eEEEEcCCeEEEEEccCCceeEEEec
Q 000703 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH-IIFVTFPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~-ll~~~~d~~I~iwDl~t~~~l~~~~l 293 (1342)
. .... .+|...|..+++++.-.. +++++.|+.|.+|++.......+..-
T Consensus 365 -~--vwt~---------------------------~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 365 -P--VWTL---------------------------KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred -c--eeEE---------------------------EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 1 1111 112224556678777665 55666899999999986544222110
Q ss_pred CCCccceEEEEEcCCCC-EEEEEeCCCcEEEEEccCCc
Q 000703 294 PRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~g~ 330 (1342)
...-+......+||+-. +|+.|+..+.+++||..++.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 00001223344567665 67778899999999988664
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.7e-13 Score=149.44 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=147.7
Q ss_pred eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEE
Q 000703 37 LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115 (1342)
Q Consensus 37 llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~v 115 (1342)
.+|.+ +.++|+++|..+++.+..+++|++ .++.|+|+.... +..+.||+.||+|++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----------~~N~vrf~~~ds------------~h~v~s~ssDG~Vr~ 98 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----------TTNGVRFISCDS------------PHGVISCSSDGTVRL 98 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCC-----------cccceEEecCCC------------CCeeEEeccCCeEEE
Confidence 45555 678999999999999999999998 899999997532 345999999999999
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe----CCCeEEEEECCCCeE-EEEE-eCCCCceEEEEecC
Q 000703 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN----GPSVLSLYNTTSASC-MWKY-DASPEYLSCIRRNP 189 (1342)
Q Consensus 116 WD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s----~d~~i~lWd~~tg~~-i~~~-~~~~~~v~~v~fsP 189 (1342)
||+++......+....+++.+-.+++-.-.+ ++++.+. .+-.|.+||++.-.. +..+ ..|.+.|++++|.|
T Consensus 99 wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~---~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 99 WDIRSQAESARISWTQQSGTPFICLDLNCKK---NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEeecchhhhheeccCCCCCcceEeeccCcC---CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999887666655555553233443332222 6788774 467899999986655 4443 45788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC-Cce
Q 000703 190 FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW-RHI 268 (1342)
Q Consensus 190 ~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg-~~l 268 (1342)
.|+..|++|+.||.|.++|...+.+.+ .|...++. ...|..+.|+.++ +.|
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeD----------------aL~~viN~------------~sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEED----------------ALLHVINH------------GSSIHLIGWLSKKYKRI 227 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchh----------------hHHHhhcc------------cceeeeeeeecCCcceE
Confidence 999999999999999999875532211 12221211 1236677998887 457
Q ss_pred EEEEcCCeEEEEEccCCceeEE
Q 000703 269 IFVTFPRELVVFDLQYETPLFS 290 (1342)
Q Consensus 269 l~~~~d~~I~iwDl~t~~~l~~ 290 (1342)
...+...+..+|+++.+.....
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred EEEEccCceeEEEccCCChhhc
Confidence 7777889999999998875433
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.56 E-value=3.1e-13 Score=153.94 Aligned_cols=299 Identities=13% Similarity=0.130 Sum_probs=197.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC--CCeE-EEEEeCC
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT--SASC-MWKYDAS 178 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~--tg~~-i~~~~~~ 178 (1342)
.++||++ .+|+|||+..-+..-.+-..-... +|..++|..... -.+|+.++|..+++|.-. +|+. +..+..
T Consensus 5 l~~aS~g--d~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~--lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~- 78 (673)
T KOG4378|consen 5 LHVASTG--DKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF--LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT- 78 (673)
T ss_pred eeeeccC--CceEEeecccccCccccccCCCCC-cceeeeccccce--EEEeecCCceeEEEecccCCCCccceeeccc-
Confidence 3455554 469999997765544432222222 689999987531 234555788999999643 3332 222222
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.+.-.|++... -+..++++|..|+|.+||+..+-. ++ .++ .+...|..
T Consensus 79 gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~----hr------------~lk---------------dh~stvt~ 126 (673)
T KOG4378|consen 79 GDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLI----HR------------FLK---------------DHQSTVTY 126 (673)
T ss_pred cchHHHHhhhh-cceeeeccCcCceeeehhhHHHHH----hh------------hcc---------------CCcceeEE
Confidence 23555666665 348899999999999999853210 00 111 12235778
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCC-EEEEEeCCCcEEEEEccCCceeeeEee
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKEGEQVHVMCT 337 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~g~~~~~~~~ 337 (1342)
+.|.-...+|++++..|+|.|..+++++.-..+..+.+. .+.-+-++|-.+ .|.+++.||.|.+||+..-.+.+.+..
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~ 205 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE 205 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh
Confidence 899988899999999999999999999877766654332 222344566444 788899999999999874332222210
Q ss_pred cccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEE
Q 000703 338 MEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWL 417 (1342)
Q Consensus 338 ~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWd 417 (1342)
.+. .| .-+++.+|.+| ..|++++.|.+|.+||
T Consensus 206 ~Hs-------------------AP---------------------------~~gicfspsne--~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 206 AHS-------------------AP---------------------------CRGICFSPSNE--ALLVSVGYDKKINIYD 237 (673)
T ss_pred hcc-------------------CC---------------------------cCcceecCCcc--ceEEEecccceEEEee
Confidence 000 01 11334445554 4999999999999999
Q ss_pred cccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeec
Q 000703 418 LTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQL 497 (1342)
Q Consensus 418 l~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l 497 (1342)
..+.+.... ++
T Consensus 238 ~~s~~s~~~------------------------------------------------------------------l~--- 248 (673)
T KOG4378|consen 238 IRSQASTDR------------------------------------------------------------------LT--- 248 (673)
T ss_pred cccccccce------------------------------------------------------------------ee---
Confidence 864321110 00
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC-CCcEEEEeeecCCCeEEEEEcCCCcEE
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS-ANAVTASFSVHNGTVRGLRWLGNSRLV 574 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~-tg~~~~~l~gH~~~V~~l~fs~d~~ll 574 (1342)
...+.++|+|.| .|.+|+.|+..|.|..||+. +...+..+..|...|++|+|-+.-.++
T Consensus 249 --y~~Plstvaf~~----------------~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 249 --YSHPLSTVAFSE----------------CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred --ecCCcceeeecC----------------CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 245778899988 58999999999999999996 345788899999999999996543333
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=2e-13 Score=155.03 Aligned_cols=249 Identities=14% Similarity=0.145 Sum_probs=179.8
Q ss_pred CCCceEeCCCC---eEEEEc-CCeEEEEeCCCcc----eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCC
Q 000703 26 NFGSADLSPSG---LLAFAS-GSSISILDSRSLQ----LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEP 97 (1342)
Q Consensus 26 ~~~a~~~s~~g---llA~gs-~~~V~v~d~~s~~----~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~ 97 (1342)
.+.+++|+|.- ++|.|. .+.|-+||....+ .+..+..|.. .|+++.|+|.+
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----------~Vs~l~F~P~n---------- 246 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----------PVSGLKFSPAN---------- 246 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-----------cccceEecCCC----------
Confidence 36799999963 888886 4799999995322 3566788888 89999999964
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE-EEEEe
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYD 176 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~ 176 (1342)
...+.|.+.||+|++=|+..+.....+.+..... ...++.|+.+. ..++.+..=|.+.+||.+++.. .+.+.
T Consensus 247 ---~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~---~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 247 ---TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAES---RSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred ---hhheeeeccCceeeeeeecchhhHHHhhcCccce-eeeeccccCCC---ccEEEeecccceEEEEeecCCccchhhh
Confidence 4568888999999999998765433332322223 67778887765 4455555456899999997765 66677
Q ss_pred CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
.|...|..++++|-.+..|+++|.|++.++||++.-.. |. ++.+. ...|...|
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~-----K~------sp~ls----------------t~~HrrsV 372 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG-----KA------SPFLS----------------TLPHRRSV 372 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcC-----CC------Cccee----------------ccccccee
Confidence 77779999999999999999999999999999754111 00 00000 11233457
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcc----CCceeEEEecC----CCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 257 VKFTFSPHWRHIIFVTFPRELVVFDLQ----YETPLFSAALP----RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 257 ~~~aFSpdg~~ll~~~~d~~I~iwDl~----t~~~l~~~~l~----~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
.++.|||++-+|++.+.|.+|+|||.. --+.+.++... |.-.+| .-++.||-.+++.|---..|-+.|-..
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEEEeccCcceeEEcCCC
Confidence 888999999999999999999999993 33444444432 111223 345789999999998888899998775
Q ss_pred Cc
Q 000703 329 GE 330 (1342)
Q Consensus 329 g~ 330 (1342)
+.
T Consensus 452 ~q 453 (498)
T KOG4328|consen 452 GQ 453 (498)
T ss_pred CE
Confidence 54
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=3.8e-13 Score=146.83 Aligned_cols=257 Identities=16% Similarity=0.220 Sum_probs=169.9
Q ss_pred CceEeCCCC--eEEEEcCCeEEEEeCCCc-------ceeEeecCCCCCCCCCCCC-CCCcEEEEEEecCCCccccCCCCC
Q 000703 28 GSADLSPSG--LLAFASGSSISILDSRSL-------QLISTIPIPPPTSAGSVAS-LSPFVTAVKWIPITLRCDLLSTEP 97 (1342)
Q Consensus 28 ~a~~~s~~g--llA~gs~~~V~v~d~~s~-------~~~~~l~~H~~~~~~~~~~-~~~~Vt~v~~sp~~~~~~~~s~~~ 97 (1342)
..+-||||| +|+...++...+|+...- ..+ -++.|.. +.+ ....|..-.|-|.= .+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~~~~-----~r~~eg~tvydy~wYs~M-------~s~ 119 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSKHLS-----YRYQEGETVYDYCWYSRM-------KSD 119 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcc-cccccee-----EEeccCCEEEEEEeeecc-------ccC
Confidence 468999999 677677899999986531 110 1112211 000 01256666675431 123
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC--CCeeEEEEeecCCCCcEEEEEeCCCeEEEEEC-CCCeE--E
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK--LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT-TSASC--M 172 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~--~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~-~tg~~--i 172 (1342)
-|+..+.|+.+++.-|.+||.-+|+....+.--.|.. ..--+|+|+||| ..|.++. .+.|+++|+ +.|+. +
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---eqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---EQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---CeEeecc-cceEEEeeccCCCCCCcc
Confidence 4778899999999999999999999888764333433 023578999998 5666554 789999999 56652 1
Q ss_pred EEE-----eCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCC
Q 000703 173 WKY-----DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSP 247 (1342)
Q Consensus 173 ~~~-----~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p 247 (1342)
... .+-.+-+.|++|+|.++..++.++-...+=++...+. ..+..+
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----------------~pl~ll------------- 246 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----------------RPLQLL------------- 246 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----------------Cceeee-------------
Confidence 111 1224578899999999999999876444433321111 111112
Q ss_pred CCCcCccceEEEEEccCCCceEEEEc-CCeEEEEEccCC-ceeEEEecCCCcc-ceEEEEE--cCCCCEEEEEeCCCcEE
Q 000703 248 ASGLFPLYMVKFTFSPHWRHIIFVTF-PRELVVFDLQYE-TPLFSAALPRGCA-KFLDVLA--DPNNDLLYCAHLDGKLS 322 (1342)
Q Consensus 248 ~~~~~~~~v~~~aFSpdg~~ll~~~~-d~~I~iwDl~t~-~~l~~~~l~~~~~-~~~~v~~--~pdg~~L~s~~~DgtI~ 322 (1342)
..+.+.|..+.|.+||..+.+++. |-+|..||+... ..+. .+.|+.. .-..|.| .|+|++|++|+.||.|+
T Consensus 247 --ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~--~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 247 --GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY--ALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred --cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh--hhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 223456889999999998888884 789999999854 4443 3444433 3345666 48999999999999999
Q ss_pred EEEccC-Cceeee
Q 000703 323 IWRRKE-GEQVHV 334 (1342)
Q Consensus 323 lW~~~~-g~~~~~ 334 (1342)
+||.++ |+.+..
T Consensus 323 vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 323 VWDLKDLGNEVSV 335 (406)
T ss_pred EEecCCCCCcccc
Confidence 999986 654433
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.53 E-value=1.4e-13 Score=153.47 Aligned_cols=211 Identities=15% Similarity=0.233 Sum_probs=157.3
Q ss_pred EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEe-----cCCCC
Q 000703 58 STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWI-----DPDPN 132 (1342)
Q Consensus 58 ~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l-----~~~~h 132 (1342)
-...||++ .|--++|+|.+ ...||||+.|.+|.||++-.+...+.+ .+.||
T Consensus 75 P~v~GHt~-----------~vLDi~w~Pfn-------------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH 130 (472)
T KOG0303|consen 75 PLVCGHTA-----------PVLDIDWCPFN-------------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH 130 (472)
T ss_pred CCccCccc-----------cccccccCccC-------------CceeecCCCCceEEEEECCCcccccCcccceEEEeec
Confidence 34668988 89999999964 678999999999999999665432221 25789
Q ss_pred CCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCC
Q 000703 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ 212 (1342)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~ 212 (1342)
++ .|.-++|.|... ++|++++.|++|.|||+.||+-+.+++ |++.|.+++|+- |+.+||+.+.|..|++||....
T Consensus 131 ~r-rVg~V~wHPtA~--NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 131 QR-RVGLVQWHPTAP--NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred ce-eEEEEeecccch--hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC
Confidence 99 999999999763 799999999999999999999888887 799999999998 9999999999999999986442
Q ss_pred cccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE----cCCeEEEEEccCC-ce
Q 000703 213 KEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT----FPRELVVFDLQYE-TP 287 (1342)
Q Consensus 213 ~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~----~d~~I~iwDl~t~-~~ 287 (1342)
.. ..+ -.. .....+ .++-|-.+|. +++.+ .++.+-|||.+.- +.
T Consensus 206 ~~----v~e------------~~~-----------heG~k~---~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 206 TV----VSE------------GVA-----------HEGAKP---ARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred cE----eee------------ccc-----------ccCCCc---ceeEEeccCc-eeeeccccccccceeccCcccccCc
Confidence 11 000 000 011111 2446888887 66666 4789999998743 44
Q ss_pred eEEEecCCCccceEEEEEcCCCCEEEE-EeCCCcEEEEEccCC
Q 000703 288 LFSAALPRGCAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEG 329 (1342)
Q Consensus 288 l~~~~l~~~~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g 329 (1342)
+....+..+ ..++-=++.+|.++||- |-.|+.||.+.....
T Consensus 255 ~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 255 IALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 444444433 33443345789998875 558999999987643
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.3e-12 Score=146.84 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=105.1
Q ss_pred eeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEeee
Q 000703 494 DGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS--------A--------NAVTASFSV 557 (1342)
Q Consensus 494 ~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~--------t--------g~~~~~l~g 557 (1342)
.+.|.+|...|++++|+| .|.+||+|+++|.|.+|-.. + -.+.+.+.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p----------------~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~ 121 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSP----------------DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG 121 (434)
T ss_pred eecccCCcceeEEEEEcC----------------CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc
Confidence 345677999999999999 58999999999999999865 3 234667889
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCE
Q 000703 558 HNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPV 637 (1342)
Q Consensus 558 H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tI 637 (1342)
|...|..++|++++.++.+ |..||.+++||+..|. ....+. .|...+..++|.|-++|+++-+.|+..
T Consensus 122 h~~diydL~Ws~d~~~l~s---------~s~dns~~l~Dv~~G~--l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~ 189 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSNFLVS---------GSVDNSVRLWDVHAGQ--LLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHP 189 (434)
T ss_pred cccchhhhhccCCCceeee---------eeccceEEEEEeccce--eEeecc-ccccccceeecchhhhhhhhhccCccc
Confidence 9999999999999988753 4557899999999998 444433 488899999999999999999999988
Q ss_pred EEEeccCCcceee
Q 000703 638 EVWAMTKNPIMLR 650 (1342)
Q Consensus 638 kvWDl~kt~~~l~ 650 (1342)
++.++ +...+++
T Consensus 190 ~~~~~-~~~~~~~ 201 (434)
T KOG1009|consen 190 EGFSA-KLKQVIK 201 (434)
T ss_pred ceeee-eeeeeee
Confidence 88877 4444443
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=4.6e-14 Score=168.66 Aligned_cols=282 Identities=13% Similarity=0.165 Sum_probs=196.7
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEE
Q 000703 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVS 575 (1342)
Q Consensus 496 ~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS 575 (1342)
.|-||-..|+|+.|.- .|..|.+|++|-.|+||..+++.++....||++.|+.++.+.++.+++
T Consensus 185 rLlgH~naVyca~fDr----------------tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR----------------TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHhhhhheeeeeecc----------------ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhh
Confidence 3557889999999986 589999999999999999999999999999999999999988775553
Q ss_pred EecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP 655 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~ 655 (1342)
++++|--|++|.+.+|. ++..++| |++.|++|+|||-. +.+.||++++||. + -..+.
T Consensus 249 ---------aaS~D~vIrvWrl~~~~--pvsvLrg-htgavtaiafsP~~----sss~dgt~~~wd~-r-~~~~~----- 305 (1113)
T KOG0644|consen 249 ---------AASNDKVIRVWRLPDGA--PVSVLRG-HTGAVTAIAFSPRA----SSSDDGTCRIWDA-R-LEPRI----- 305 (1113)
T ss_pred ---------hcccCceEEEEecCCCc--hHHHHhc-cccceeeeccCccc----cCCCCCceEeccc-c-ccccc-----
Confidence 23344579999999998 7777888 99999999999954 7789999999998 4 11111
Q ss_pred eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec
Q 000703 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1342)
Q Consensus 656 vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~ 735 (1342)
+.|. ++.. ..|+ .. .+... ......|++++.|++-+.|...
T Consensus 306 -----y~pr----p~~~-~~~~----------------~~------------~s~~~-~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 306 -----YVPR----PLKF-TEKD----------------LV------------DSILF-ENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred -----cCCC----CCCc-cccc----------------ce------------eeeec-cccccccccccCCcccccchhh
Confidence 1111 1000 0000 00 00000 0123457788888888877763
Q ss_pred CCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCE
Q 000703 736 GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 736 g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~ 814 (1342)
.-..++.... -++..+--..+.+++-.+-.+.+|++-+|+ .+.+.+|...+.-+.|+|-. .+
T Consensus 347 ~l~~~~~~li-----------f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn------~r 409 (1113)
T KOG0644|consen 347 QLAWRSNLLI-----------FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN------PR 409 (1113)
T ss_pred HhhhhccceE-----------EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC------cH
Confidence 2111110000 011111112456777788899999999998 67889999999999999973 34
Q ss_pred E-EEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 815 I-AVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 815 L-as~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+ .++++||...|||+..+.++..-. .|| ..+.+-.|+++ |.. ++....-|.+.+....
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~-~gh---~kl~d~kFSqd----gts--~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYF-IGH---GKLVDGKFSQD----GTS--IALSDDHGQLYILGTG 468 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeee-ccc---ceeeccccCCC----Cce--EecCCCCCceEEeccC
Confidence 4 478999999999999988764333 565 46788899997 553 4445555667776543
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=4e-12 Score=137.11 Aligned_cols=271 Identities=15% Similarity=0.274 Sum_probs=177.3
Q ss_pred CCCcEEEEeCCCCc--E-EEEeeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCEEEEEEcCCCce-------eee
Q 000703 537 QSGAVDVVDVSANA--V-TASFSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-------RAF 605 (1342)
Q Consensus 537 ~DGtI~lWDl~tg~--~-~~~l~gH~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-------~~l 605 (1342)
.|..|.+-++..+. + .+.|.-|.+.|..|+=+| +.++++.-+....+. +.-..+.||.+..... .++
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s--~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDS--GVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCC--cceeeEEEEecccccCccccchhhHh
Confidence 34566666665432 2 345666789999999888 447777666532211 1223577898743210 122
Q ss_pred EEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc--------CceEEEEEcCCCCCCCCCCCCCCc
Q 000703 606 RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--------LPFTVLEWTLPTVPWPSQTGPSRQ 677 (1342)
Q Consensus 606 ~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~--------~~vt~l~wsp~~~~~~~~~~~~k~ 677 (1342)
..+...+.+.|.+|.|.|++..+++.. |..|.+|++..+.+....+. ..+++-.|+|-
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH------------- 181 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH------------- 181 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC-------------
Confidence 223322446899999999999998765 88999999942232222221 12344444432
Q ss_pred cccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCe----eeccCCCCCCCcccc
Q 000703 678 SSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR----IRDFRPKWPSSSFIS 753 (1342)
Q Consensus 678 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~----v~d~~~~~~~~~~~~ 753 (1342)
..+..+++ ..|+++..||++... |.+ .
T Consensus 182 -------------------------------------Hdgnqv~t-t~d~tl~~~D~RT~~~~~sI~d-----------A 212 (370)
T KOG1007|consen 182 -------------------------------------HDGNQVAT-TSDSTLQFWDLRTMKKNNSIED-----------A 212 (370)
T ss_pred -------------------------------------CccceEEE-eCCCcEEEEEccchhhhcchhh-----------h
Confidence 22444444 478999999996432 222 2
Q ss_pred ccceEEEEee---cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEE
Q 000703 754 SDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1342)
Q Consensus 754 ~~~~V~~va~---dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD 828 (1342)
|-..|..+.| .-.+||+|+.||.||+||.+.-+ ...+.+|..||++|+|.|.. . +.|++++.|..|.+|-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h-d----qLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH-D----QLILSGGSDSAVNLSC 287 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc-c----eEEEecCCCceeEEEe
Confidence 4446788888 23479999999999999998755 67889999999999999972 2 7899999999999995
Q ss_pred CCCCC---c-----------------ccccccCCC-----CCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 829 LDSQD---P-----------------LANSLLQPQ-----FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 829 l~t~~---~-----------------l~~~l~~gh-----~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
..+-. + -.+.|..|. .+...|.+++|+.. +|..+||-+.||.+.|=.+.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa-----dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA-----DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC-----CCeeEEEeccCceEEeecCC
Confidence 43210 0 001121111 12367999999986 89999999999998765544
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-11 Score=152.60 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=153.0
Q ss_pred EeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-----CeE
Q 000703 49 LDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-----RSV 123 (1342)
Q Consensus 49 ~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~-----g~~ 123 (1342)
|++ .|.++..|..|+. .|+.++-+++ .+.+++||+.||+|+|||.+. +..
T Consensus 1034 W~p-~G~lVAhL~Ehs~-----------~v~k~a~s~~-------------~~s~FvsgS~DGtVKvW~~~k~~~~~~s~ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-----------AVIKLAVSSE-------------HTSLFVSGSDDGTVKVWNLRKLEGEGGSA 1088 (1431)
T ss_pred CCc-cceEeehhhhccc-----------cccceeecCC-------------CCceEEEecCCceEEEeeehhhhcCccee
Confidence 544 3677888889987 8888888864 468999999999999999853 222
Q ss_pred EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC--Ce-----EEEEEe--CCCCceEEEEecCCCCC-
Q 000703 124 VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS--AS-----CMWKYD--ASPEYLSCIRRNPFDAR- 193 (1342)
Q Consensus 124 ~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t--g~-----~i~~~~--~~~~~v~~v~fsP~d~~- 193 (1342)
...+.+.- .+.+|..+...+.+ +.+|.++.||.|.+-+++. +. +..... ...-.+..-+|...+..
T Consensus 1089 rS~ltys~-~~sr~~~vt~~~~~---~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1089 RSELTYSP-EGSRVEKVTMCGNG---DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred eeeEEEec-cCCceEEEEeccCC---CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence 22221211 22378888887776 7888899999999998875 22 222222 21123445555554555
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc
Q 000703 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF 273 (1342)
Q Consensus 194 ~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~ 273 (1342)
.++.+..-+.|..||..... .+-+++. .-..+.+.+++.+|-+.+++.|..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~----------------~~w~lk~-------------~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRH----------------DAWRLKN-------------QLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eEEEEEeccceEEecchhhh----------------hHHhhhc-------------CccccceeEEEecCCceEEEEecC
Confidence 66666667788888753310 0111111 011346888999999999999999
Q ss_pred CCeEEEEEccCCceeEEEecCCCccceEEEEEcC---CCCEEEEE-e-CCCcEEEEEccCCceeeeE
Q 000703 274 PRELVVFDLQYETPLFSAALPRGCAKFLDVLADP---NNDLLYCA-H-LDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 274 d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~p---dg~~L~s~-~-~DgtI~lW~~~~g~~~~~~ 335 (1342)
.|.+.+||+.-+..+.....+ ...++..+..|| +....+++ + ..+-|.+|+..+|.+..++
T Consensus 1216 ~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred CceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 999999999999888766543 236666676664 34555554 4 5889999999988755555
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.46 E-value=6.4e-12 Score=137.38 Aligned_cols=242 Identities=17% Similarity=0.279 Sum_probs=162.3
Q ss_pred eEEEEEcCCCc-EEEEecCCcccccCcccCEEEEEEcCCC-------ceeee---EEeccCCCCCeEEEEEc-------C
Q 000703 562 VRGLRWLGNSR-LVSFSYSQVNEKSGGYINRLVVTCLRSG-------INRAF---RVLQKPERAPIRALRAS-------S 623 (1342)
Q Consensus 562 V~~l~fs~d~~-llS~s~d~~~~~sg~~~~~i~lwD~~tG-------~~~~l---~~l~g~h~~~I~~i~~S-------p 623 (1342)
.++..|+|||. +++.+. +|.+.+|++... ....+ ..++-.....|..-.|- |
T Consensus 52 ~kgckWSPDGSciL~~se----------dn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSE----------DNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hccceeCCCCceEEeecc----------cCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 45789999995 444333 458899987431 00000 00111122344444443 6
Q ss_pred CCCEEEEEECCCCEEEEeccCCcceeeecc--C---ce---EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCccc
Q 000703 624 SGRYLLILFRDAPVEVWAMTKNPIMLRSLA--L---PF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVST 695 (1342)
Q Consensus 624 dg~~Las~s~D~tIkvWDl~kt~~~l~~l~--~---~v---t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~ 695 (1342)
+..++|+.++|.+|++||. -+|++-.++. . .+ .++.|+||
T Consensus 122 ~t~l~a~ssr~~PIh~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~D------------------------------- 169 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPD------------------------------- 169 (406)
T ss_pred ccceeeeccccCceeeeec-cccccccchhhhhhHHhhhhheeEEecCC-------------------------------
Confidence 7889999999999999999 5876654433 1 12 35677755
Q ss_pred ccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe--cCCeeeccCCCCCCCccccccceEEEEee---cCCEEEE
Q 000703 696 PTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVM 770 (1342)
Q Consensus 696 ~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv--~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~Las 770 (1342)
++. .+++....|++||+ .|+...++..... +.+ +..+.|.+++| +..+++.
T Consensus 170 ---------------------Geq-lfaGykrcirvFdt~RpGr~c~vy~t~~~-~k~-gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 170 ---------------------GEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTK-GKF-GQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred ---------------------CCe-EeecccceEEEeeccCCCCCCcchhhhhc-ccc-cccceeeeeeccCCCCcceee
Confidence 344 36678899999999 3544433221111 111 34567889998 7779999
Q ss_pred EeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEE-CCCeEEEEECCCCCcccccccCCCCC--C
Q 000703 771 GDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLF-HDNTFSVFDLDSQDPLANSLLQPQFP--G 846 (1342)
Q Consensus 771 Gs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s-~DgtI~IWDl~t~~~l~~~l~~gh~~--~ 846 (1342)
|+--.++-|+.-..+. +..+-+|++.|+.+.|.++ | .+|-++. .|-.|..||++........| .+|.. +
T Consensus 226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed--G----n~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~~TN 298 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED--G----NKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVGDTN 298 (406)
T ss_pred ecccceeeeEecCCCCceeeecccCCCeeeEEeccC--c----CeecccccCCCeEEEEeehhccchhhhh-hhhccCcc
Confidence 9999999999887766 6777899999999999999 5 6787775 47779999998766554555 66653 2
Q ss_pred CcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 847 ~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
.+|. .+-.|. ++ .|++|+.||.|++||+..
T Consensus 299 QRI~-FDld~~----~~--~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 299 QRIL-FDLDPK----GE--ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ceEE-EecCCC----Cc--eeeccCCCccEEEEecCC
Confidence 3332 333444 45 789999999999999874
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=5.2e-12 Score=139.40 Aligned_cols=272 Identities=18% Similarity=0.238 Sum_probs=179.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCC-C--cEEEEecCCcccccCcccCEEEEEEcCCCceeee
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN-S--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d-~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1342)
...+|++..+|+|++||..||+.+.+|.+|+..++.++|..+ + .+++++ .|++|++||+|+....+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s----------sDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS----------SDGTVRLWDIRSQAESAR 109 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec----------cCCeEEEEEeecchhhhh
Confidence 368999999999999999999999999999999999999763 2 344443 356999999998653333
Q ss_pred EEeccCCC-CCeEEEEEcCCCCEEEEEE----CCCCEEEEeccCCc-ceeeecc----CceEEEEEcCCCCCCCCCCCCC
Q 000703 606 RVLQKPER-APIRALRASSSGRYLLILF----RDAPVEVWAMTKNP-IMLRSLA----LPFTVLEWTLPTVPWPSQTGPS 675 (1342)
Q Consensus 606 ~~l~g~h~-~~I~~i~~Spdg~~Las~s----~D~tIkvWDl~kt~-~~l~~l~----~~vt~l~wsp~~~~~~~~~~~~ 675 (1342)
..... +. .+..+++....++.++.|. .|..|.+||+ +.. +.++.+. ..||.+.|+|.
T Consensus 110 ~~~~~-~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDv-R~~qq~l~~~~eSH~DDVT~lrFHP~----------- 176 (376)
T KOG1188|consen 110 ISWTQ-QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDV-RSEQQLLRQLNESHNDDVTQLRFHPS----------- 176 (376)
T ss_pred eeccC-CCCCcceEeeccCcCCeEEeccccccCceEEEEEEe-ccccchhhhhhhhccCcceeEEecCC-----------
Confidence 33222 33 5778888888889999885 4678999999 554 3355443 35789999864
Q ss_pred CccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCcccccc
Q 000703 676 RQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSD 755 (1342)
Q Consensus 676 k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~ 755 (1342)
..+.|++|+.||-|-+||+++..--|. .. ....|.
T Consensus 177 ----------------------------------------~pnlLlSGSvDGLvnlfD~~~d~EeDa--L~---~viN~~ 211 (376)
T KOG1188|consen 177 ----------------------------------------DPNLLLSGSVDGLVNLFDTKKDNEEDA--LL---HVINHG 211 (376)
T ss_pred ----------------------------------------CCCeEEeecccceEEeeecCCCcchhh--HH---Hhhccc
Confidence 136789999999999999966432110 00 011344
Q ss_pred ceEEEEee--cC-CEEEEEeCCCcEEEEECCCCcee-eeccc--c----------ccEEEEEEecCCCCCCCCCEEEEEE
Q 000703 756 GLITAMAY--RL-PHVVMGDRSGNIRWWDVTTGHSS-QFSTH--R----------EGIRRIKFSPVVPGDRSRGRIAVLF 819 (1342)
Q Consensus 756 ~~V~~va~--dg-~~LasGs~DgtI~lWDl~tg~~~-~l~~H--~----------~~V~~v~fSPd~~g~~~~~~Las~s 819 (1342)
.+|..+.| ++ +.|.+-+..++..+|+++.+... .+.-- . ..+-.. .+|.. . +..++++
T Consensus 212 sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~-~----~~~~l~g 285 (376)
T KOG1188|consen 212 SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGD-K----DTCALAG 285 (376)
T ss_pred ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCC-c----ceEEEec
Confidence 56899999 44 35888889999999999987521 11100 0 011111 12331 1 3455554
Q ss_pred C-CCeEEEE---ECCCCCcccc--cccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 820 H-DNTFSVF---DLDSQDPLAN--SLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 820 ~-DgtI~IW---Dl~t~~~l~~--~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
. -++..++ |..++. +.. +.++|+. ..-|.++-|... +. +|.+||.||.+.+|..+
T Consensus 286 ~~~n~~~~~~~~~~~s~~-~~~~~a~l~g~~-~eiVR~i~~~~~----~~--~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGS-LLTEPAILQGGH-EEIVRDILFDVK----ND--VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeeccccc-ccCccccccCCc-HHHHHHHhhhcc----cc--eeeccCCCceEEEEecC
Confidence 4 4555555 333333 111 1123322 245777777643 34 67899999999999963
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.44 E-value=2e-13 Score=163.26 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=106.0
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~ 134 (1342)
|.+.-|.||.. .|.|+.|-.. |.++++|++|..|+||...++.++.. ..||++
T Consensus 181 k~ikrLlgH~n-----------aVyca~fDrt--------------g~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ 233 (1113)
T KOG0644|consen 181 KNIKRLLGHRN-----------AVYCAIFDRT--------------GRYIITGSDDRLVKIWSMETARCLAS--CRGHSG 233 (1113)
T ss_pred HHHHHHHhhhh-----------heeeeeeccc--------------cceEeecCccceeeeeeccchhhhcc--CCCCcc
Confidence 44566789987 8999999764 68999999999999999999999988 489998
Q ss_pred CCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEe
Q 000703 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~ 209 (1342)
.|++++-+... .++|+++.|..|++|.+.+|.++..+.+|.+.|++++|+|+- +.+.||++.+||.
T Consensus 234 -ditdlavs~~n---~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 234 -DITDLAVSSNN---TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDA 299 (1113)
T ss_pred -ccchhccchhh---hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccc
Confidence 99999987765 789999999999999999999998899999999999999964 5688999999985
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=139.33 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=150.5
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEee-ecCCCeEEEEEcCCCcEEEEe
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFS-VHNGTVRGLRWLGNSRLVSFS 577 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~-gH~~~V~~l~fs~d~~llS~s 577 (1342)
+|.+.|+++-|.. ..+|.+|+.-|.|++|++.+.+-.-.+. .|...|+.+.-.+++++.+-+
T Consensus 12 p~~~~v~s~~fqa-----------------~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqg 74 (323)
T KOG0322|consen 12 PHSSSVTSVLFQA-----------------NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQG 74 (323)
T ss_pred cccchheehhhcc-----------------chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcC
Confidence 5788899888765 3458899999999999999988777777 567788888888876666443
Q ss_pred cCCcccccCcccCEEEEEEcCCCceeeeEE-----------------------------------------------ecc
Q 000703 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRV-----------------------------------------------LQK 610 (1342)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~-----------------------------------------------l~g 610 (1342)
.| .++.+|++.-+....++. ...
T Consensus 75 Rd----------~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 75 RD----------PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred CC----------ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence 33 356666654321110000 000
Q ss_pred ---CCCCCeEEEEEc-CCCC--EEEEEECCCCEEEEeccCCcceeeecc-------------CceEEEEEcCCCCCCCCC
Q 000703 611 ---PERAPIRALRAS-SSGR--YLLILFRDAPVEVWAMTKNPIMLRSLA-------------LPFTVLEWTLPTVPWPSQ 671 (1342)
Q Consensus 611 ---~h~~~I~~i~~S-pdg~--~Las~s~D~tIkvWDl~kt~~~l~~l~-------------~~vt~l~wsp~~~~~~~~ 671 (1342)
+..+.+.+..+- .++. +|++|..++.+.+||+ .++..+-.++ .++.++++.+..
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~-S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------ 217 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL-STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------ 217 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEc-cCCceeeccccccccccchhhccCcceeeeechhh------
Confidence 011233333321 1233 4578899999999999 4653332222 122333332110
Q ss_pred CCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCC--e--eec-cCCCC
Q 000703 672 TGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR--R--IRD-FRPKW 746 (1342)
Q Consensus 672 ~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~--~--v~d-~~~~~ 746 (1342)
++ =++++.+..+..|.++.. . ++. ...+.
T Consensus 218 --------------------------------------------~r--Gisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 218 --------------------------------------------DR--GISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred --------------------------------------------cC--CcCCCccccceeeeeccccCcccccceEEecC
Confidence 00 023445555666666321 1 110 01111
Q ss_pred CCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEE
Q 000703 747 PSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFS 825 (1342)
Q Consensus 747 ~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~ 825 (1342)
|+. .-..|..|++.+|+++.||.||||..++.. +..+.-|++.|.+|+|+|+. ..||.++.|++|.
T Consensus 252 pGv-------~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~------~lmAaaskD~rIS 318 (323)
T KOG0322|consen 252 PGV-------SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC------ELMAAASKDARIS 318 (323)
T ss_pred CCc-------cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC------chhhhccCCceEE
Confidence 211 112455599999999999999999999987 67788999999999999993 5799999999999
Q ss_pred EEEC
Q 000703 826 VFDL 829 (1342)
Q Consensus 826 IWDl 829 (1342)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=9.2e-13 Score=153.31 Aligned_cols=248 Identities=18% Similarity=0.247 Sum_probs=162.3
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-----C---cEEEEeeecCCCeEEEEEcC
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-----N---AVTASFSVHNGTVRGLRWLG 569 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-----g---~~~~~l~gH~~~V~~l~fs~ 569 (1342)
..|...+.+++|+| ..+.|++++.||+|++|+++. + ..+.+|.+|.++|-|+...+
T Consensus 291 ~s~~d~ir~l~~~~----------------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 291 RSHDDCIRALAFHP----------------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred ecchhhhhhhhcCC----------------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC
Confidence 34777888888887 468899999999999999931 1 24678999999999999998
Q ss_pred CCcEEEEecCCcccccCcccCEEEEEEcCCC-------ceeee-EEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEe
Q 000703 570 NSRLVSFSYSQVNEKSGGYINRLVVTCLRSG-------INRAF-RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1342)
Q Consensus 570 d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG-------~~~~l-~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWD 641 (1342)
++..+ .+|+.|++|+.|++... ....+ ..+.| |...|+.+++|+..+.|++++.|+|+++|+
T Consensus 355 n~~~~---------ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 355 NGEHC---------YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEE---------EeeccCceeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeec
Confidence 88544 14566789999965311 01112 22345 899999999999999999999999999999
Q ss_pred ccCCcceeeeccCc----e-EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCC
Q 000703 642 MTKNPIMLRSLALP----F-TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDT 716 (1342)
Q Consensus 642 l~kt~~~l~~l~~~----v-t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~ 716 (1342)
. ..... .++..+ + +++.+... +
T Consensus 425 ~-~~~~~-~~f~~~~e~g~Plsvd~~ss-----------~---------------------------------------- 451 (577)
T KOG0642|consen 425 P-TEESP-CTFGEPKEHGYPLSVDRTSS-----------R---------------------------------------- 451 (577)
T ss_pred c-CCcCc-cccCCccccCCcceEeeccc-----------h----------------------------------------
Confidence 8 33322 333211 1 22222100 0
Q ss_pred CCeEEEEecCCCEEEEEecCCee-eccCCCCCCCcccc--ccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeee
Q 000703 717 SESFAFALANGALGVFEVHGRRI-RDFRPKWPSSSFIS--SDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQF 790 (1342)
Q Consensus 717 ~e~la~~~~DgtI~lwdv~g~~v-~d~~~~~~~~~~~~--~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l 790 (1342)
.+-...+...+.+++....+ .++ ..++.....+ ....++-+.+ .+++..++..|+.|+++|..++. ++..
T Consensus 452 ---~a~~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 452 ---PAHSLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ---hHhhhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 00000111111111110000 000 0000000000 0012333334 56789999999999999999998 6888
Q ss_pred ccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCc
Q 000703 791 STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP 834 (1342)
Q Consensus 791 ~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~ 834 (1342)
..|...|+++++.|+ | .+|++++.|+.+++|.++...+
T Consensus 528 ~a~~~svtslai~~n--g----~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPN--G----PYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeccceecceeecCC--C----ceEEeecCCceeehhhccchhe
Confidence 999999999999999 5 6899999999999999877654
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.7e-11 Score=148.67 Aligned_cols=165 Identities=17% Similarity=0.288 Sum_probs=107.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeEEEEEeCC
Q 000703 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDAS 178 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~~ 178 (1342)
-...+++++..-+|+|||.+.++.+..|.........|.+|++..+.++ .+|.+++.||.|+||+-- ++ | ..
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~~---~---~~ 1147 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYADK---W---KK 1147 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEecccccc---c---CC
Confidence 3467999998889999999999999887543333337999999987644 789999999999999742 21 1 00
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.+-|+ +|.+..+....+ ..-|. +
T Consensus 1148 ~eLVT--aw~~Ls~~~~~~-r~~~~----------------------------------------------------v-- 1170 (1387)
T KOG1517|consen 1148 PELVT--AWSSLSDQLPGA-RGTGL----------------------------------------------------V-- 1170 (1387)
T ss_pred ceeEE--eeccccccCccC-CCCCe----------------------------------------------------e--
Confidence 11121 122210000000 00011 1
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEc-CCCCEEEEEeCCCcEEEEEccCC
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLAD-PNNDLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~-pdg~~L~s~~~DgtI~lW~~~~g 329 (1342)
+.+-....+|++++.-+.|+|||++..+....++.... .-+.++... ..|+.|+.|-.||+||++|++.-
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccC
Confidence 13333334667777789999999999988887776422 223333332 45799999999999999998743
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.39 E-value=8.1e-12 Score=134.76 Aligned_cols=246 Identities=12% Similarity=0.146 Sum_probs=165.9
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEeCCCcce-eEeecCCCCCCCCCCCCCCCcEEEEEEec
Q 000703 8 PADSWDCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSISILDSRSLQL-ISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1342)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~-~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1342)
....|+|-..|+-..+. +++|+-|-|++ .+|.-.++.|.+|+...+.. ++.+...... .-...-++-+|||
T Consensus 108 ~~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~------e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA------EMRHSFTSGAWSP 180 (370)
T ss_pred ccchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc------cccceecccccCC
Confidence 34459998888865554 78999999998 78877899999999876654 4444322110 0012678888998
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
. ++|..+|+.+ |+++..||+++-.+...++ ..|.. .|.+|.|.|+.. .+|++++.|+.|+|||
T Consensus 181 H------------Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~-dAHgq-~vrdlDfNpnkq--~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 181 H------------HDGNQVATTS-DSTLQFWDLRTMKKNNSIE-DAHGQ-RVRDLDFNPNKQ--HILVTCGDDGYVRIWD 243 (370)
T ss_pred C------------CccceEEEeC-CCcEEEEEccchhhhcchh-hhhcc-eeeeccCCCCce--EEEEEcCCCccEEEEe
Confidence 4 5788898875 8899999999887766643 35545 799999999863 7999999999999999
Q ss_pred CCC-CeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc---chhhhhhhhhccc
Q 000703 166 TTS-ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC---TELLKLERELSAG 241 (1342)
Q Consensus 166 ~~t-g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~---~~l~~l~~~~~~~ 241 (1342)
++. ..++..+..|..-+.+|+|+|+....+.++|.|..|.+|....-.. ...+....+. ..-...+++.-.-
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS----E~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS----EQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc----ccccccccccccCcchhhHHhccccc
Confidence 984 4477888888999999999999999999999999999986543111 1111111010 0001111100000
Q ss_pred cCCCCCCCCcCccceEEEEEccCCCce-EEEEcCCeEEEEEc
Q 000703 242 AASLSPASGLFPLYMVKFTFSPHWRHI-IFVTFPRELVVFDL 282 (1342)
Q Consensus 242 s~~~~p~~~~~~~~v~~~aFSpdg~~l-l~~~~d~~I~iwDl 282 (1342)
.|..+ .-..+...|..+++|.-..++ ++.++||.+.|=.+
T Consensus 320 dg~l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 320 DGQLE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccc-cccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 00000 011234457778998776665 55568998876444
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.8e-11 Score=149.59 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=150.8
Q ss_pred CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeE
Q 000703 538 SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIR 617 (1342)
Q Consensus 538 DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~ 617 (1342)
+..|.|||... ...+.+..|...|....|+|||+.+++.... ..+.+|++||+.+|+.+.+..+.+ ...
T Consensus 183 ~~~i~i~d~dg-~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~------~~~~~i~i~dl~tg~~~~l~~~~g----~~~ 251 (429)
T PRK01742 183 PYEVRVADYDG-FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE------NKKSQLVVHDLRSGARKVVASFRG----HNG 251 (429)
T ss_pred eEEEEEECCCC-CCceEeccCCCccccceEcCCCCEEEEEEec------CCCcEEEEEeCCCCceEEEecCCC----ccC
Confidence 57899999854 4456778888899999999999766554321 113579999999987555544333 234
Q ss_pred EEEEcCCCCEEEEEE-CCCCEEEE--eccCCcceeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCC
Q 000703 618 ALRASSSGRYLLILF-RDAPVEVW--AMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1342)
Q Consensus 618 ~i~~Spdg~~Las~s-~D~tIkvW--Dl~kt~~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1342)
.++|||||++|+.++ .++.++|| |+ .++...+ +. ..++...|+|+
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~-~~~~~~~-lt~~~~~~~~~~wSpD--------------------------- 302 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGA-NGGTPSQ-LTSGAGNNTEPSWSPD--------------------------- 302 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEEC-CCCCeEe-eccCCCCcCCEEECCC---------------------------
Confidence 689999999998765 68877776 54 3443322 22 12345666654
Q ss_pred CcccccccCCCCCcCCCCCCcCCCCCCeEEEEe-cCCCEEEEEec--CCeeeccCCCCCCCccccccceEEEEeecCCEE
Q 000703 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHV 768 (1342)
Q Consensus 692 g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~-~DgtI~lwdv~--g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~L 768 (1342)
++.+++.+ .+|...+|+++ +...+.. ++.+....++.||++|
T Consensus 303 -------------------------G~~i~f~s~~~g~~~I~~~~~~~~~~~~l----------~~~~~~~~~SpDG~~i 347 (429)
T PRK01742 303 -------------------------GQSILFTSDRSGSPQVYRMSASGGGASLV----------GGRGYSAQISADGKTL 347 (429)
T ss_pred -------------------------CCEEEEEECCCCCceEEEEECCCCCeEEe----------cCCCCCccCCCCCCEE
Confidence 34555554 57888888773 3322211 1112112334499999
Q ss_pred EEEeCCCcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC--CCCcccccccCCCCCC
Q 000703 769 VMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD--SQDPLANSLLQPQFPG 846 (1342)
Q Consensus 769 asGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~--t~~~l~~~l~~gh~~~ 846 (1342)
+.++.++ |.+||+.+++...+..+ .....+.|+|+ | +.|+.++.|+.+++|++. .+. ....+ .+|.
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPd--G----~~i~~~s~~g~~~~l~~~~~~G~-~~~~l-~~~~-- 415 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPN--G----IMIIYSSTQGLGKVLQLVSADGR-FKARL-PGSD-- 415 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCC--C----CEEEEEEcCCCceEEEEEECCCC-ceEEc-cCCC--
Confidence 9888866 55699999875544322 23467889999 5 678888899999988763 343 22333 3443
Q ss_pred CcEEEEEEeCC
Q 000703 847 TLVLELDWLPT 857 (1342)
Q Consensus 847 ~~V~~l~ws~d 857 (1342)
+.+.+.+|+|.
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 56888999984
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=4.7e-10 Score=132.35 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=142.1
Q ss_pred EEEcCCeEEEEeCCC-cc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE-eCCCcEE
Q 000703 39 AFASGSSISILDSRS-LQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA-DRHGRVA 114 (1342)
Q Consensus 39 A~gs~~~V~v~d~~s-~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg-~~dG~V~ 114 (1342)
|.+.++.|.+||..+ ++ .+++++.. + ....++++|++ ++|+.+ ..++.|.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~-----------~~~~l~~spd~--------------~~lyv~~~~~~~i~ 60 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVP-G-----------QVQPMVISPDK--------------RHLYVGVRPEFRVL 60 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecC-C-----------CCccEEECCCC--------------CEEEEEECCCCcEE
Confidence 334578999999863 33 55666532 2 45678888874 556554 4688999
Q ss_pred EEeCC-CCeE--EEEecCCCCCCCCeeEEEEeecCCCCcEEEEE-eCCCeEEEEECCC-Ce---EEEEEeCCCCceEEEE
Q 000703 115 LLDFR-LRSV--VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI-NGPSVLSLYNTTS-AS---CMWKYDASPEYLSCIR 186 (1342)
Q Consensus 115 vWD~~-~g~~--~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~-s~d~~i~lWd~~t-g~---~i~~~~~~~~~v~~v~ 186 (1342)
+|++. +|.. +..... .+ ....++|+|++ ++|.++ ..++.|.+|++.+ |. .+....+ .....+++
T Consensus 61 ~~~~~~~g~l~~~~~~~~---~~-~p~~i~~~~~g---~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~ 132 (330)
T PRK11028 61 SYRIADDGALTFAAESPL---PG-SPTHISTDHQG---RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSAN 132 (330)
T ss_pred EEEECCCCceEEeeeecC---CC-CceEEEECCCC---CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeE
Confidence 99996 4543 222211 23 45789999987 555554 4589999999864 32 2222222 23456789
Q ss_pred ecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 187 RNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 187 fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
|+| |++.+.++ ..++.|.+||+..... ..... ....++ + ... ....++|+|||
T Consensus 133 ~~p-~g~~l~v~~~~~~~v~v~d~~~~g~----l~~~~-----~~~~~~------------~-~g~---~p~~~~~~pdg 186 (330)
T PRK11028 133 IDP-DNRTLWVPCLKEDRIRLFTLSDDGH----LVAQE-----PAEVTT------------V-EGA---GPRHMVFHPNQ 186 (330)
T ss_pred eCC-CCCEEEEeeCCCCEEEEEEECCCCc----ccccC-----CCceec------------C-CCC---CCceEEECCCC
Confidence 999 88888655 4569999999854211 00000 000000 0 001 12346999999
Q ss_pred CceEEEEc-CCeEEEEEccC--Cce--eEEEec-CC---CccceEEEEEcCCCCEEEEEeC-CCcEEEEEccC
Q 000703 266 RHIIFVTF-PRELVVFDLQY--ETP--LFSAAL-PR---GCAKFLDVLADPNNDLLYCAHL-DGKLSIWRRKE 328 (1342)
Q Consensus 266 ~~ll~~~~-d~~I~iwDl~t--~~~--l~~~~l-~~---~~~~~~~v~~~pdg~~L~s~~~-DgtI~lW~~~~ 328 (1342)
+.+.++.. +++|.+||+.. ++. +..+.. +. +......+.++|||++||++.+ +++|.+|++.+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 99877775 89999999973 332 333321 11 1111224778999999999854 78999999854
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.37 E-value=6.4e-11 Score=129.70 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=154.5
Q ss_pred ceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 29 SADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
-+.+||+| .||+.++..++|-|..+.|+.|.+.-- + .|.-+-|+-|. ...|..+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cl-d-----------ki~yieW~ads-------------~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCL-D-----------KIVYIEWKADS-------------CHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHH-H-----------Hhhheeeeccc-------------eeeeeee
Confidence 47899999 899999999999999999987765432 2 68889999774 4578888
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEe
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRR 187 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~f 187 (1342)
..++.|.+|++...+....+ +.... ++..++|||++. .+|.+..-+-.|.+|.+.|..+.. +......+..++|
T Consensus 68 yk~~~vqvwsl~Qpew~ckI--deg~a-gls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKI--DEGQA-GLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF 141 (447)
T ss_pred eccceEEEEEeecceeEEEe--ccCCC-cceeeeECCCcc--eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE
Confidence 99999999999998888775 55566 899999999873 788888889999999998766543 3333456688999
Q ss_pred cCCCCCEEEEEeCC-CeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC
Q 000703 188 NPFDARHFCVLGLK-GLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR 266 (1342)
Q Consensus 188 sP~d~~~la~~s~d-G~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~ 266 (1342)
.| |++..+.++.. +.=++ .+.. -+.| .+.++... .......+.+||||.
T Consensus 142 ~~-dg~f~ai~sRrDCkdyv-~i~~-------c~~W----------~ll~~f~~-----------dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 142 HP-DGQFCAILSRRDCKDYV-QISS-------CKAW----------ILLKEFKL-----------DTIDLTGIEWSPDGN 191 (447)
T ss_pred CC-CCceeeeeecccHHHHH-HHHh-------hHHH----------HHHHhcCC-----------CcccccCceECCCCc
Confidence 99 88877777542 11000 0000 0000 01111110 011234568999986
Q ss_pred ceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000703 267 HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 267 ~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1342)
. +.|||---.-.+ +.-+++ -++..+.++|-+++|+.|+-|+.+|+-+-
T Consensus 192 ~---------laVwd~~Leykv--~aYe~~-lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 192 W---------LAVWDNVLEYKV--YAYERG-LGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred E---------EEEecchhhhee--eeeeec-cceeEEEeccccceEEeeccchhhhhhce
Confidence 5 446665322221 122332 23556777888999999999999998764
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=1.5e-11 Score=132.85 Aligned_cols=246 Identities=15% Similarity=0.256 Sum_probs=161.7
Q ss_pred CCeEEEEEcC----CCcEEEEecCCcccccCcccCEEEEEEc--CCCceeeeEEeccCCCCCeEEEEEcCCC-----CEE
Q 000703 560 GTVRGLRWLG----NSRLVSFSYSQVNEKSGGYINRLVVTCL--RSGINRAFRVLQKPERAPIRALRASSSG-----RYL 628 (1342)
Q Consensus 560 ~~V~~l~fs~----d~~llS~s~d~~~~~sg~~~~~i~lwD~--~tG~~~~l~~l~g~h~~~I~~i~~Spdg-----~~L 628 (1342)
-++.++.|+. .-++..+++. ..+.|.|+|.-+ .+|+...... -.|.-|++.+.|.|+. +.|
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~------Ee~~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFI------EEYNNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CceeeeccccCCCcceeEEEeeec------cccCCeeEEEEEccCCCceeccCC--CCCCCCccceEecCCccccCcchh
Confidence 3566777862 2355555543 345678887554 4566332222 1378899999999986 345
Q ss_pred EEEECCCCEEEEeccCCcceee-----------eccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCccccc
Q 000703 629 LILFRDAPVEVWAMTKNPIMLR-----------SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPT 697 (1342)
Q Consensus 629 as~s~D~tIkvWDl~kt~~~l~-----------~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~ 697 (1342)
|+. +..+|+|.+......++ .+..|.|+..|.
T Consensus 117 ATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn----------------------------------- 159 (364)
T KOG0290|consen 117 ATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN----------------------------------- 159 (364)
T ss_pred hcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc-----------------------------------
Confidence 554 45799999831111110 011123333333
Q ss_pred ccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-c--CCEEEEEeCC
Q 000703 698 IASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-R--LPHVVMGDRS 774 (1342)
Q Consensus 698 ~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~-d--g~~LasGs~D 774 (1342)
.-+...+.+.+-|-+..+||++......+++ .++.|+..|..|+| . -+++|+.+.|
T Consensus 160 ----------------e~dp~~igtSSiDTTCTiWdie~~~~~~vkT-----QLIAHDKEV~DIaf~~~s~~~FASvgaD 218 (364)
T KOG0290|consen 160 ----------------EVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-----QLIAHDKEVYDIAFLKGSRDVFASVGAD 218 (364)
T ss_pred ----------------cCCcceeEeecccCeEEEEEEeeccccceee-----EEEecCcceeEEEeccCccceEEEecCC
Confidence 0123567788899999999996532211111 25679999999999 3 3689999999
Q ss_pred CcEEEEECCCCceeee----ccccccEEEEEEecCCCCCCCCCEEEEEE-CCCeEEEEECCCCCcccccccCCCCCCCcE
Q 000703 775 GNIRWWDVTTGHSSQF----STHREGIRRIKFSPVVPGDRSRGRIAVLF-HDNTFSVFDLDSQDPLANSLLQPQFPGTLV 849 (1342)
Q Consensus 775 gtI~lWDl~tg~~~~l----~~H~~~V~~v~fSPd~~g~~~~~~Las~s-~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V 849 (1342)
|.+|++|++...-.++ +....+..+++|++..+ .+||+-. ....|.|-|++.+.--...| ++|. +.|
T Consensus 219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp-----nymATf~~dS~~V~iLDiR~P~tpva~L-~~H~--a~V 290 (364)
T KOG0290|consen 219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-----NYMATFAMDSNKVVILDIRVPCTPVARL-RNHQ--ASV 290 (364)
T ss_pred CcEEEEEecccccceEEecCCCCCCcceeeccCcCCc-----hHHhhhhcCCceEEEEEecCCCcceehh-hcCc--ccc
Confidence 9999999998652222 33357788888887644 4677754 44679999999876332334 6776 789
Q ss_pred EEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 850 LELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 850 ~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
..++|.|. ..-.|+++|.|..+-+||+...
T Consensus 291 NgIaWaPh-----S~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 291 NGIAWAPH-----SSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cceEecCC-----CCceeeecCCcceEEEEecccc
Confidence 99999997 3336899999999999999843
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=6.9e-12 Score=144.58 Aligned_cols=244 Identities=13% Similarity=0.139 Sum_probs=162.1
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEcCC-eEEEEeCCCcceeEeec-CCCCCCCCCCCCCCCcEEEEEEecCCCccccC
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFASGS-SISILDSRSLQLISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs~~-~V~v~d~~s~~~~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1342)
-|.| |...|+|++|+.+| +||+|++. .+.|||+...++++.+. ||.. .|.+++|-|..
T Consensus 45 eL~G--H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta-----------NIFsvKFvP~t------ 105 (758)
T KOG1310|consen 45 ELTG--HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA-----------NIFSVKFVPYT------ 105 (758)
T ss_pred hhcc--ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc-----------ceeEEeeeccC------
Confidence 5778 78899999999999 99999975 88999999988877665 8998 99999999963
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 94 STEPGSSHLLLAAADRHGRVALLDFRLR--------SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 94 s~~~~p~g~~LASg~~dG~V~vWD~~~g--------~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
+.++++||..|..|+|.|+..- -.....-...|+. .|.-|+-.|+++ ..+-+++.||+|+-+|
T Consensus 106 ------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~P--htfwsasEDGtirQyD 176 (758)
T KOG1310|consen 106 ------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGP--HTFWSASEDGTIRQYD 176 (758)
T ss_pred ------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhh-hhhheecCCCCC--ceEEEecCCcceeeec
Confidence 5689999999999999999741 1111211355777 788888778774 7888999999999999
Q ss_pred CCCCeEE-EEE-------eCCCC--ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe--cCcchhhh
Q 000703 166 TTSASCM-WKY-------DASPE--YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ--TDCTELLK 233 (1342)
Q Consensus 166 ~~tg~~i-~~~-------~~~~~--~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~--~~~~~l~~ 233 (1342)
++..... ... ..+.+ ...|+..+|.++..|++|+.|-+.+++|..-.-+........... .++....-
T Consensus 177 iREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y 256 (758)
T KOG1310|consen 177 IREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY 256 (758)
T ss_pred ccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence 9753211 001 11112 346999999999999999999999999832210000000000000 00000000
Q ss_pred hh-hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEe
Q 000703 234 LE-RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAA 292 (1342)
Q Consensus 234 l~-~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~ 292 (1342)
.. .+.-...| ....-..-+.-++|+|+|..|+..-..-.|++||+..++....+-
T Consensus 257 f~p~hlkn~~g----n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 257 FSPGHLKNSQG----NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ecCccccCccc----ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 00000000 000011124567999999998888777789999999887654443
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.7e-12 Score=142.44 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=141.7
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe-
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD- 176 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~- 176 (1342)
+++|..||+|+.||++|||++.+-..+.. ...|++ .|.+|.|+||+ ++|++.+.| ..++|++.+|-++..++
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~~~~~-eV~DL~FS~dg---k~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSMLTILE--EIAHHA-EVKDLDFSPDG---KFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcchhhhh--hHhhcC-ccccceeCCCC---cEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 45678999999999999999876655544 366778 99999999988 999999999 89999999997765554
Q ss_pred CC-CCceEEEEecCCCC-----CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000703 177 AS-PEYLSCIRRNPFDA-----RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1342)
Q Consensus 177 ~~-~~~v~~v~fsP~d~-----~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1342)
.. .+.+..++|+- |+ +.++....-+.|+.+|......+ ...++..-.
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------~~l~~~~~~------------ 278 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGS--------------NFLRLRKKI------------ 278 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccc--------------cccchhhhh------------
Confidence 32 34667888887 55 23333344556666554321110 111111100
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 251 ~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
.....+.+++.|+||+.++.++-||.|.|++..+-+++..++- -|...+..+.|+||.+++++.+.|.++.+-.+.
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 0111366789999999999999999999999999888766542 233566789999999999999999988877654
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=4.8e-10 Score=132.33 Aligned_cols=245 Identities=11% Similarity=0.041 Sum_probs=151.7
Q ss_pred CCCCceEeCCCC-eEEEE--cCCeEEEEeCC-Ccce--eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 25 NNFGSADLSPSG-LLAFA--SGSSISILDSR-SLQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~g--s~~~V~v~d~~-s~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
.+...+++||+| .|+.+ .++.|.+|+.. ++++ +.... ..+ ....++|+|++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~-----------~p~~i~~~~~g----------- 91 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG-----------SPTHISTDHQG----------- 91 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC-----------CceEEEECCCC-----------
Confidence 356789999998 44333 35788899886 3432 22221 112 45678898764
Q ss_pred CCCcEEEEEe-CCCcEEEEeCCC-Ce---EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 000703 99 SSHLLLAAAD-RHGRVALLDFRL-RS---VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1342)
Q Consensus 99 p~g~~LASg~-~dG~V~vWD~~~-g~---~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1342)
++|++++ .++.|.+||+.+ |. .+..+ .+. . ....++++|++. .++++...++.|.+||+.+...+.
T Consensus 92 ---~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~-~-~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 92 ---RFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGL-E-GCHSANIDPDNR--TLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred ---CEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCC-C-cccEeEeCCCCC--EEEEeeCCCCEEEEEEECCCCccc
Confidence 5566655 589999999963 32 22222 222 2 456788999772 444666678999999997632221
Q ss_pred -------EEeCCCCceEEEEecCCCCCEEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCC
Q 000703 174 -------KYDASPEYLSCIRRNPFDARHFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASL 245 (1342)
Q Consensus 174 -------~~~~~~~~v~~v~fsP~d~~~la~~s~-dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~ 245 (1342)
.... ......++|+| |++++.++.. ++.|.+||+...... .+... .+..
T Consensus 163 ~~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~---~~~~~---------~~~~--------- 219 (330)
T PRK11028 163 AQEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE---IECVQ---------TLDM--------- 219 (330)
T ss_pred ccCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC---EEEEE---------EEec---------
Confidence 1111 23456789999 9998877755 899999998642110 11110 0000
Q ss_pred CCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCc----eeEEEecCCCccceEEEEEcCCCCEEEEEeC-CC
Q 000703 246 SPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYET----PLFSAALPRGCAKFLDVLADPNNDLLYCAHL-DG 319 (1342)
Q Consensus 246 ~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~----~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~-Dg 319 (1342)
.|.....+.+...+.|+|||++++++. .++.|.+||++... .+..+... .....+.++|||++||+++. ++
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEccCC
Confidence 010001122344678999999888875 47899999996432 22332221 12235778999999998776 89
Q ss_pred cEEEEEcc
Q 000703 320 KLSIWRRK 327 (1342)
Q Consensus 320 tI~lW~~~ 327 (1342)
+|.+|++.
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999874
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=129.63 Aligned_cols=252 Identities=14% Similarity=0.141 Sum_probs=167.2
Q ss_pred cccCCCCCCCCCCceEeCCCCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC
Q 000703 16 FMLPGPPSRNNFGSADLSPSGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1342)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~gllA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1342)
+.|. +|...++++-|-.++.|..| ..+.|.+|+.++...+..+++|.. -+|+.++-.|+
T Consensus 8 fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~----------~~it~lq~~p~-------- 67 (323)
T KOG0322|consen 8 FVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR----------LFITNLQSIPN-------- 67 (323)
T ss_pred eEec--cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhcc----------ceeeceeecCC--------
Confidence 4566 36667999999998855555 458999999999998888885443 28999988875
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEE------------ec-------------CCC------------------
Q 000703 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLW------------ID-------------PDP------------------ 131 (1342)
Q Consensus 95 ~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~------------l~-------------~~~------------------ 131 (1342)
..|.+-++|+++.+|++.-+..+.. +. .++
T Consensus 68 -------d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 68 -------DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred -------cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 3588889999999999866331110 00 000
Q ss_pred --------CCCCCeeEEEEeecCCCC-cEEEEEeCCCeEEEEECCCCeEEEEE----------eCCCCceEEEEecCCCC
Q 000703 132 --------NPKLGIQDLCWIVSKPDS-FVLAAINGPSVLSLYNTTSASCMWKY----------DASPEYLSCIRRNPFDA 192 (1342)
Q Consensus 132 --------h~~~~V~~l~wsp~~~~~-~lLas~s~d~~i~lWd~~tg~~i~~~----------~~~~~~v~~v~fsP~d~ 192 (1342)
..+ .|.+..|-... .+ -+|+++..+|.+.+||+.+|+.+..+ ..|.+++.++.|++. -
T Consensus 141 i~dd~~~~Klg-svmc~~~~~~c-~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~ 217 (323)
T KOG0322|consen 141 IADDSERSKLG-SVMCQDKDHAC-GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-C 217 (323)
T ss_pred ccCchhccccC-ceeeeeccccc-cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-h
Confidence 001 23333322211 12 57788889999999999998654322 234567888888762 2
Q ss_pred CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000703 193 RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1342)
Q Consensus 193 ~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~ 272 (1342)
.+=+.++.+-.+..|.+.-....-...+++ .++ .| .+..+..-||++-+++++
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~----------~lk----------------np-Gv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEI----------TLK----------------NP-GVSGVRIRPDGKILATAG 270 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceE----------Eec----------------CC-CccceEEccCCcEEeecc
Confidence 222333333334444321110000000000 011 11 244457889999999999
Q ss_pred cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000703 273 FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1342)
.|+.|+||...+.+++.++..|+ +.+.+++|+||-..++.++.|++|.+|+.
T Consensus 271 WD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 271 WDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999887664 67889999999999999999999999974
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.7e-10 Score=128.33 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=180.4
Q ss_pred cccccCCCCCCCCCCceEeCCCC-eEEEEcC-CeEEEEeCC------CcceeEeecCCCCCCCCCCCCCCCcEEEEEEec
Q 000703 14 CNFMLPGPPSRNNFGSADLSPSG-LLAFASG-SSISILDSR------SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1342)
Q Consensus 14 ~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~-~~V~v~d~~------s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1342)
|.+-+-| |...++|+.||.+| +||+|.+ -.++||... ..+.|+....|.. +.|.|++|--
T Consensus 48 ~qKD~~~--H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~----------SNIF~L~F~~ 115 (609)
T KOG4227|consen 48 CQKDVRE--HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR----------SNIFSLEFDL 115 (609)
T ss_pred hhhhhhh--hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccc----------cceEEEEEcc
Confidence 4444555 66779999999988 8998876 589999974 3567776655442 2899999986
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
.+ +.|.||+.+|+|++.|+.+.+.+-.+......+ .|+.|.-+|.+ .+|++.+.++.|.+||
T Consensus 116 ~N--------------~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~D---N~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 116 EN--------------RFLYSGERWGTVIKHDIETKQSIYVANENNNRG-DVYHMDQHPTD---NTLIVVTRAKLVSFID 177 (609)
T ss_pred CC--------------eeEecCCCcceeEeeecccceeeeeecccCccc-ceeecccCCCC---ceEEEEecCceEEEEe
Confidence 53 689999999999999999998887775544455 89999999975 8999999999999999
Q ss_pred CCCCe----EEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccc
Q 000703 166 TTSAS----CMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAG 241 (1342)
Q Consensus 166 ~~tg~----~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~ 241 (1342)
.+... ++. .......+.++.|.|-.++.|++.+..|-+-+||..-+.. . +.+.... .
T Consensus 178 ~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~-~--------------~~~~~~~--~- 238 (609)
T KOG4227|consen 178 NRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR-P--------------VYQRSMF--K- 238 (609)
T ss_pred ccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc-h--------------HHhhhcc--c-
Confidence 87432 322 2223567889999999999999999999899998643110 0 0000000 0
Q ss_pred cCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc---cce---EEEEEcCCCCEEEEE
Q 000703 242 AASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC---AKF---LDVLADPNNDLLYCA 315 (1342)
Q Consensus 242 s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~---~~~---~~v~~~pdg~~L~s~ 315 (1342)
| ..........+.|+|.|.++++.-....-.+||.-+.++. ++...... -.. -++.|. +...+++|
T Consensus 239 -~-----L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tG 310 (609)
T KOG4227|consen 239 -G-----LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFI-DDYTVATG 310 (609)
T ss_pred -c-----CcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeee-cceeeecc
Confidence 0 0011113456689999999988877777788998874432 23322111 111 233333 33459999
Q ss_pred eCCCcEEEEEcc
Q 000703 316 HLDGKLSIWRRK 327 (1342)
Q Consensus 316 ~~DgtI~lW~~~ 327 (1342)
+.|=.|.+|.+.
T Consensus 311 SD~~~i~~WklP 322 (609)
T KOG4227|consen 311 SDHWGIHIWKLP 322 (609)
T ss_pred CcccceEEEecC
Confidence 999999999974
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.31 E-value=1.5e-10 Score=129.76 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=108.8
Q ss_pred CCCCCCceEeCCCC--eEEEEcC-CeEEEEeCCCcc-------eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 23 SRNNFGSADLSPSG--LLAFASG-SSISILDSRSLQ-------LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs~-~~V~v~d~~s~~-------~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
|+.+|--++|.|.. .||+|++ ++|.||+..... .+..|.||.. .|.-|+|+|--
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----------rVg~V~wHPtA----- 143 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----------RVGLVQWHPTA----- 143 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-----------eEEEEeecccc-----
Confidence 77788899999954 8999985 789999976543 3677999998 99999999963
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM 172 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i 172 (1342)
...|+|++.|.+|.|||+.+|+.+.++. |.. -|++++|+.+| .+|++...|.-|+|||.++|+.+
T Consensus 144 --------~NVLlsag~Dn~v~iWnv~tgeali~l~---hpd-~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 144 --------PNVLLSAGSDNTVSIWNVGTGEALITLD---HPD-MVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred --------hhhHhhccCCceEEEEeccCCceeeecC---CCC-eEEEEEeccCC---ceeeeecccceeEEEcCCCCcEe
Confidence 4679999999999999999999888853 778 89999999988 79999999999999999999999
Q ss_pred EEEeCCC
Q 000703 173 WKYDASP 179 (1342)
Q Consensus 173 ~~~~~~~ 179 (1342)
+...+|.
T Consensus 209 ~e~~~he 215 (472)
T KOG0303|consen 209 SEGVAHE 215 (472)
T ss_pred eeccccc
Confidence 8775543
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2e-10 Score=127.81 Aligned_cols=287 Identities=12% Similarity=0.147 Sum_probs=189.7
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC------cEEEEee-ecCCCeEEEEEcC
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN------AVTASFS-VHNGTVRGLRWLG 569 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg------~~~~~l~-gH~~~V~~l~fs~ 569 (1342)
+.+|.+-|.+|.|+- .+++||+|+.|-.++||++..- +.+.... -|.+.|-+++|..
T Consensus 52 ~~~H~GCiNAlqFS~----------------N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 52 VREHTGCINALQFSH----------------NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhccccceeeecc----------------CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc
Confidence 346889999999986 4899999999999999998632 2222222 3558999999988
Q ss_pred CCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcc--
Q 000703 570 NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI-- 647 (1342)
Q Consensus 570 d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~-- 647 (1342)
.++++- +|..++++.+-|+++.+...+.. .....+.|..+..+|..+.|++.+.++.|-+||. +...
T Consensus 116 ~N~~~~---------SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~-Rd~~~~ 184 (609)
T KOG4227|consen 116 ENRFLY---------SGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN-RDRQNP 184 (609)
T ss_pred CCeeEe---------cCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEec-cCCCCC
Confidence 777662 45556789999999987433322 1123458999999999999999999999999998 4432
Q ss_pred ----eeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEE
Q 000703 648 ----MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA 723 (1342)
Q Consensus 648 ----~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~ 723 (1342)
++...+..|..+.|.|.. ..+++++
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~---------------------------------------------------P~Li~~~ 213 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPET---------------------------------------------------PALILVN 213 (609)
T ss_pred CceeeecCCCccceeeeecCCC---------------------------------------------------ceeEEec
Confidence 222223445666676531 2457778
Q ss_pred ecCCCEEEEEecCCe--eeccC--CCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeec-ccc--
Q 000703 724 LANGALGVFEVHGRR--IRDFR--PKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFS-THR-- 794 (1342)
Q Consensus 724 ~~DgtI~lwdv~g~~--v~d~~--~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~-~H~-- 794 (1342)
+..+-+.+||+.... +-.+. .-+|.. .+.+ ..+-| .|..+.+--.-.--.++|+-+.++-.|. .|.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~----~~~~-M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQE----NTEW-MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCccc----chhh-hheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 888888999985322 21110 001110 0000 12334 6766666555555667888775544432 121
Q ss_pred -----ccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCc------ccc---------------cccCCCCCCCc
Q 000703 795 -----EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP------LAN---------------SLLQPQFPGTL 848 (1342)
Q Consensus 795 -----~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~------l~~---------------~l~~gh~~~~~ 848 (1342)
-.|.++.|.-| ..+++++.|-.|.+|.+-.... ++. +.+.||. .-
T Consensus 289 GY~N~~T~KS~~F~~D-------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR--Sv 359 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDD-------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR--SV 359 (609)
T ss_pred cceeeeeeeeeeeecc-------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc--cc
Confidence 35778888877 4599999999999998742110 111 1224554 45
Q ss_pred EEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEc
Q 000703 849 VLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1342)
Q Consensus 849 V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi 881 (1342)
+..|.|+|. . .+|++.|..+.||+|.-
T Consensus 360 ~NQVRF~~H-----~-~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 360 PNQVRFSQH-----N-NLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccceeecCC-----c-ceEeccchhhheecccc
Confidence 778999996 3 36899999999999974
No 195
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1e-08 Score=122.97 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=69.0
Q ss_pred eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEE
Q 000703 37 LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115 (1342)
Q Consensus 37 llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~v 115 (1342)
+||.+. .+.|.|||...+..+.-|..|.+ .|-.+.|-|.-.- ....|+.-....+|.+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~-----------~~qdl~W~~~rd~----------Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSND-----------SVQDLCWVPARDD----------SRDVLLAIHGSSTLVL 139 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCc-----------chhheeeeeccCc----------chheeEEecCCcEEEE
Confidence 577664 47999999998888888888887 7888999875311 1234555555678999
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEE
Q 000703 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1342)
Q Consensus 116 WD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1342)
|+..+|+..-... ..+. ...++.+.|-+ ++-+...+..|.+-+-+
T Consensus 140 wntdtG~k~Wk~~--ys~~-iLs~f~~DPfd--~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 140 WNTDTGEKFWKYD--YSHE-ILSCFRVDPFD--SRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred EEccCCceeeccc--cCCc-ceeeeeeCCCC--cceEEEEccCceEEEEe
Confidence 9999999876542 2223 45556666655 34444444455555544
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=9.6e-10 Score=122.25 Aligned_cols=238 Identities=13% Similarity=0.143 Sum_probs=155.8
Q ss_pred CCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 27 FGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
+.-++|++.- -+|++ .+..|+|+|-.+ +....|+....+ .|+|++|-|.+ +.-|
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQr----------nvtclawRPls-------------asel 156 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQR----------NVTCLAWRPLS-------------ASEL 156 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhc----------ceeEEEeccCC-------------ccee
Confidence 4568999864 35554 578999999877 655566655442 89999999975 5679
Q ss_pred EEEeCCCcEEEEeCCC-C---e--------EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe-CCCeEEEEECCCCeE
Q 000703 105 AAADRHGRVALLDFRL-R---S--------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN-GPSVLSLYNTTSASC 171 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~-g---~--------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s-~d~~i~lWd~~tg~~ 171 (1342)
|.|.+.| |.||.... + + +...+..+|| . +|+.|+|.+|+ ..|++++ +|..|.|||+++|.+
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~-pVtsmqwn~dg---t~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-N-PVTSMQWNEDG---TILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-c-eeeEEEEcCCC---CEEeecccCcceEEEEcCCCCCc
Confidence 9998877 88997632 1 1 1223334666 4 89999999987 5666665 678999999999987
Q ss_pred EEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000703 172 MWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1342)
Q Consensus 172 i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1342)
+--...+.+.++-+.|+| |+..|.++..|+..++|..... . .++. |..
T Consensus 231 ~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~----w-t~er---------------w~l----------- 278 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS----W-TKER---------------WIL----------- 278 (445)
T ss_pred ccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc----c-eecc---------------eec-----------
Confidence 644434467788899999 9999999999999999943110 0 1111 111
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEcc----CCcee-----------EEE---ecC----CCccceEEEEEcCCC
Q 000703 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ----YETPL-----------FSA---ALP----RGCAKFLDVLADPNN 309 (1342)
Q Consensus 252 ~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~----t~~~l-----------~~~---~l~----~~~~~~~~v~~~pdg 309 (1342)
.+++|-..+++|+|+.|+++..... +|+.+. .+... ..+ .+. .-++....+++.|.|
T Consensus 279 gsgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred cCCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 1224666789999999988765322 233332 11100 000 001 114556678888888
Q ss_pred CEEEEEeCCCc--------EEEEEcc
Q 000703 310 DLLYCAHLDGK--------LSIWRRK 327 (1342)
Q Consensus 310 ~~L~s~~~Dgt--------I~lW~~~ 327 (1342)
.+|++.-.-+. |.+||.+
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhccc
Confidence 88887654433 5556654
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.1e-11 Score=137.35 Aligned_cols=266 Identities=16% Similarity=0.156 Sum_probs=190.2
Q ss_pred CCCCCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEee-cCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCC
Q 000703 23 SRNNFGSADLSPSG-LLAFASG-SSISILDSRSLQLISTI-PIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs~-~~V~v~d~~s~~~~~~l-~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1342)
|...|+.|-|+..| .|++|++ -.|++||=.+++....+ .||.. .|-.-+|-|..
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~-----------NvfQaKFiP~s------------ 197 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCN-----------NVFQAKFIPFS------------ 197 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCccccccccccc-----------chhhhhccCCC------------
Confidence 66789999999999 8999987 58999998877765444 47887 89899999974
Q ss_pred CCcEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe--
Q 000703 100 SHLLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD-- 176 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~-~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~-- 176 (1342)
+.+.|++.+.||.|++=.+ .+|.+..+--+-.|.+ +|.-++--|+.+ .-+.++++|+.+.-.|++++.+.-++.
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccC-ccceeeecCCCC--CcccccccccceeeeeeccCCccceeeee
Confidence 4678999999999998875 4555543333456777 999999988764 778899999999999998776533221
Q ss_pred CCCC----ceEEEEecCCCCCEEEEEeCCCeEEEEEecCC-cccce-eeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000703 177 ASPE----YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ-KEDEV-VVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1342)
Q Consensus 177 ~~~~----~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~-~~~~~-~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1342)
...+ .+..++.+|.....+|+++.|-.++++|...- ..... ..+++.- .+ ...
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-----------~h----------l~~ 333 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-----------HH----------LVE 333 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-----------cc----------ccc
Confidence 1122 35689999988899999999999999985431 10000 0111100 00 011
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEccCCce------------eE-EEecCCCccceEEEEE-cCCCCEEEEEe
Q 000703 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP------------LF-SAALPRGCAKFLDVLA-DPNNDLLYCAH 316 (1342)
Q Consensus 251 ~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~------------l~-~~~l~~~~~~~~~v~~-~pdg~~L~s~~ 316 (1342)
..+..|..++||.++..+++.-.|-.|++|.-..+.- +. ++..|+....+-.|-| .|...++++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 3345577889999998888888899999996554321 11 1344554444444443 68889999999
Q ss_pred CCCcEEEEEccCCceeeeE
Q 000703 317 LDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 317 ~DgtI~lW~~~~g~~~~~~ 335 (1342)
.-|.|-||+.++++.+..|
T Consensus 414 DCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred ccceEEEEecchhHHHHHh
Confidence 9999999999998865554
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=6.9e-10 Score=136.59 Aligned_cols=273 Identities=12% Similarity=0.144 Sum_probs=174.1
Q ss_pred CCccccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecC
Q 000703 9 ADSWDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPI 86 (1342)
Q Consensus 9 ~~~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~ 86 (1342)
-..|+-.+ +.| +......+-++|-- .++.+. ...|.|||-+.++.+.-|.-+..+ ...|+.+.+..+
T Consensus 1052 i~~W~~~~-~~~--n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1052 IGNWDQKF-MTG--NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINE 1120 (1387)
T ss_pred ccchHHHH-Hhc--CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC--------CCccceeeeecc
Confidence 34688743 333 11123467888754 444444 569999999988887666655432 238999999876
Q ss_pred CCccccCCCCCCCCCcEEEEEeCCCcEEEEe-CCCC----eEE-EEecCCCCCCC---CeeEEEEeecCCCCcEEEEEeC
Q 000703 87 TLRCDLLSTEPGSSHLLLAAADRHGRVALLD-FRLR----SVV-LWIDPDPNPKL---GIQDLCWIVSKPDSFVLAAING 157 (1342)
Q Consensus 87 ~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD-~~~g----~~~-~~l~~~~h~~~---~V~~l~wsp~~~~~~lLas~s~ 157 (1342)
- +..+|.+|+.||.||||+ +.++ +.+ .+..+.++... .-.-+.|-.. .+.+++ ++.
T Consensus 1121 ~------------D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~--~G~Ll~-tGd 1185 (1387)
T KOG1517|consen 1121 Q------------DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ--SGHLLV-TGD 1185 (1387)
T ss_pred c------------chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh--CCeEEe-cCC
Confidence 3 568899999999999996 4443 222 23333332211 1122334432 234544 444
Q ss_pred CCeEEEEECCCCeEEEEEeCCCC-ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000703 158 PSVLSLYNTTSASCMWKYDASPE-YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1342)
Q Consensus 158 d~~i~lWd~~tg~~i~~~~~~~~-~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1342)
-..|+|||+....++..+...++ -+++++-+-..+..+++|..||.|+++|.+-..+... +.-+ +
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~-v~~~-------------R 1251 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL-VCVY-------------R 1251 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc-ceee-------------c
Confidence 78999999998888777665443 5677777766789999999999999999765322111 1111 1
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccCCC-ceEEEEcCCeEEEEEccCCceeEEE--ecCCCcc-ceEEEEEcCCCCEE
Q 000703 237 ELSAGAASLSPASGLFPLYMVKFTFSPHWR-HIIFVTFPRELVVFDLQYETPLFSA--ALPRGCA-KFLDVLADPNNDLL 312 (1342)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~-~ll~~~~d~~I~iwDl~t~~~l~~~--~l~~~~~-~~~~v~~~pdg~~L 312 (1342)
. +...-.|+.+.|-+.|- .|++++.+|.|++||+........+ ..+...+ ....+...++.+.+
T Consensus 1252 ~------------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1252 E------------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred c------------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCee
Confidence 0 11111267777877653 5999999999999999874222222 2222112 34555556889999
Q ss_pred EEEeCCCcEEEEEccCCceeeeE
Q 000703 313 YCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 313 ~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
|||+. +.|+||+.. |+++..+
T Consensus 1320 AsGs~-q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred eecCc-ceEEEEecC-hhhhccc
Confidence 99999 999999986 6655544
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.28 E-value=6e-10 Score=136.52 Aligned_cols=266 Identities=17% Similarity=0.265 Sum_probs=172.7
Q ss_pred CCcEEEEeCCCCcEEEEee-ecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCCcee---eeEEeccCC
Q 000703 538 SGAVDVVDVSANAVTASFS-VHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINR---AFRVLQKPE 612 (1342)
Q Consensus 538 DGtI~lWDl~tg~~~~~l~-gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~---~l~~l~g~h 612 (1342)
++.+.|||+..... -++. --...|+++.|.|.. .+++ .|.++|.|.+||++.+..+ .+......|
T Consensus 221 ~~~~~vW~~~~p~~-Pe~~~~~~s~v~~~~f~p~~p~ll~---------gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh 290 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-PELVLESPSEVTCLKFCPFDPNLLA---------GGCYNGQVVLWDLRKGSDTPPSGLSALEVSH 290 (555)
T ss_pred CceEEEEecCCCCC-ceEEEecCCceeEEEeccCCcceEE---------eeccCceEEEEEccCCCCCCCcccccccccC
Confidence 34899999986622 2222 235789999999865 4443 3556789999999876532 222223458
Q ss_pred CCCeEEEEEcCCCC--EEEEEECCCCEEEEeccCCcceee-eccC--------------ceEEEEEcCCCCCCCCCCCCC
Q 000703 613 RAPIRALRASSSGR--YLLILFRDAPVEVWAMTKNPIMLR-SLAL--------------PFTVLEWTLPTVPWPSQTGPS 675 (1342)
Q Consensus 613 ~~~I~~i~~Spdg~--~Las~s~D~tIkvWDl~kt~~~l~-~l~~--------------~vt~l~wsp~~~~~~~~~~~~ 675 (1342)
..++..+.|-.+.. -++++|.||.|..|++ +.-.+.. .+.. ..++++|.
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~-~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~------------- 356 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT-DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE------------- 356 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeec-cccccchhhcccccccccccccccccceeeEeec-------------
Confidence 89999999876544 4999999999999998 4322110 0000 01111111
Q ss_pred CccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCC-Cccccc
Q 000703 676 RQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPS-SSFISS 754 (1342)
Q Consensus 676 k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~-~~~~~~ 754 (1342)
.....+|++|..+|.|..-+-.|.+... ....+. ..+..|
T Consensus 357 --------------------------------------~~~p~~FiVGTe~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 357 --------------------------------------PTDPNHFIVGTEEGKVYKGCRKGYTPAP-EVSYKGHSTFITH 397 (555)
T ss_pred --------------------------------------cCCCceEEEEcCCcEEEEEeccCCcccc-ccccccccccccc
Confidence 1234679999999999875544433211 000011 123467
Q ss_pred cceEEEEee---cCCEEEEEeCCCcEEEEECCCC-c-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEEC
Q 000703 755 DGLITAMAY---RLPHVVMGDRSGNIRWWDVTTG-H-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1342)
Q Consensus 755 ~~~V~~va~---dg~~LasGs~DgtI~lWDl~tg-~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl 829 (1342)
.+.|.++.+ --+.+.+++ |-+++||..... . +..+.-+...|++++|||..+ ..++++..||+|.|||+
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp-----avF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP-----AVFATVDGDGNLDIWDL 471 (555)
T ss_pred CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc-----eEEEEEcCCCceehhhh
Confidence 888999988 223444444 999999988732 2 455677888899999999976 46888889999999999
Q ss_pred CCCC--cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 830 DSQD--PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 830 ~t~~--~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
.... ++.... .+ .....-+.|++. ++ .|+.|...|++.+|++.
T Consensus 472 l~~~~~Pv~s~~--~~--~~~l~~~~~s~~----g~--~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 472 LQDDEEPVLSQK--VC--SPALTRVRWSPN----GK--LLAVGDANGTTHILKLS 516 (555)
T ss_pred hccccCCccccc--cc--ccccceeecCCC----Cc--EEEEecCCCcEEEEEcC
Confidence 7554 221111 11 234566778875 44 68999999999999996
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.9e-10 Score=140.72 Aligned_cols=207 Identities=16% Similarity=0.177 Sum_probs=134.4
Q ss_pred ccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC---CCEEEEeccCCcc--eeeeccCceEEEEEc
Q 000703 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD---APVEVWAMTKNPI--MLRSLALPFTVLEWT 662 (1342)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D---~tIkvWDl~kt~~--~l~~l~~~vt~l~ws 662 (1342)
.+.+|++||...+.. +.+.. +...+...+|||||++|+.++.+ ..|.+||+ .++. .+..+........|+
T Consensus 182 ~~~~i~i~d~dg~~~---~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 182 QPYEVRVADYDGFNQ---FIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred ceEEEEEECCCCCCc---eEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCccCceeEC
Confidence 356899999865442 22333 56689999999999999988754 36999999 6664 333333333456777
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEe-cCCCEEEE--EecCCee
Q 000703 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVF--EVHGRRI 739 (1342)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~-~DgtI~lw--dv~g~~v 739 (1342)
|+ ++.++++. .+|.+.+| |+++..+
T Consensus 257 PD----------------------------------------------------G~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 257 PD----------------------------------------------------GSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred CC----------------------------------------------------CCEEEEEEecCCcEEEEEEECCCCCe
Confidence 55 34566654 67776655 5555444
Q ss_pred eccCCCCCCCccccccceEEEEee--cCCEEEEE-eCCCcEEEEECCC--CceeeeccccccEEEEEEecCCCCCCCCCE
Q 000703 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG-DRSGNIRWWDVTT--GHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 740 ~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasG-s~DgtI~lWDl~t--g~~~~l~~H~~~V~~v~fSPd~~g~~~~~~ 814 (1342)
+.+ ..+.+.+...+| ||+.|+.. +.+|...||++.. +....+ +|.+ ..+.|||+ | ++
T Consensus 285 ~~l---------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD--G----~~ 346 (429)
T PRK01742 285 SQL---------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD--G----KT 346 (429)
T ss_pred Eee---------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC--C----CE
Confidence 321 123344566777 89877755 4688899998754 333333 4544 46789999 5 67
Q ss_pred EEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 815 IAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 815 Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
|+..+.++ +.+||+.+++.. .+...+ ...++.|+|+ ++ .|+.++.||.+++|++.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~--~lt~~~----~~~~~~~sPd----G~--~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTE--VLSSTF----LDESPSISPN----GI--MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeE--EecCCC----CCCCceECCC----CC--EEEEEEcCCCceEEEEE
Confidence 88877776 555999888632 121111 2346789998 55 57788889999998864
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5.3e-11 Score=135.20 Aligned_cols=199 Identities=16% Similarity=0.128 Sum_probs=146.6
Q ss_pred CceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 28 GSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 28 ~a~~~s~~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
.+++++.+| ++|+| .+++++||+-.+++.+.....|.+ .|..+.|||| |.+||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----------eV~DL~FS~d--------------gk~la 202 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-----------EVKDLDFSPD--------------GKFLA 202 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC-----------ccccceeCCC--------------CcEEE
Confidence 479999997 89987 589999999778888888888888 8999999987 57899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCC-cEEEEEe-CCCeEEEEECCCCe-----EEEEEeCC
Q 000703 106 AADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAIN-GPSVLSLYNTTSAS-----CMWKYDAS 178 (1342)
Q Consensus 106 Sg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~s-~d~~i~lWd~~tg~-----~i~~~~~~ 178 (1342)
|-+.| ..+|||+++|.++++....+ .+.-...+.|+.++... -+||+.- .-+.|++||+..-. +..+....
T Consensus 203 sig~d-~~~VW~~~~g~~~a~~t~~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 203 SIGAD-SARVWSVNTGAALARKTPFS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EecCC-ceEEEEeccCchhhhcCCcc-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 99999 89999999998888764222 23256778888875432 2444443 33566666653211 11222333
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.+.|++++.++ |++.+|.++.||.|.+++... .+.+++ ++ ..|...|..
T Consensus 281 ~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~-------lq~~~~---------vk--------------~aH~~~VT~ 329 (398)
T KOG0771|consen 281 FKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS-------LQRLQY---------VK--------------EAHLGFVTG 329 (398)
T ss_pred cCcceeEEEcC-CCcEEEEeccCCcEEEEEece-------eeeeEe---------eh--------------hhheeeeee
Confidence 56899999999 999999999999999987421 222221 01 224456889
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccC
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQY 284 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t 284 (1342)
+.|+||.+.+++.+.+.++.|.-++-
T Consensus 330 ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 330 LTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988877764
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=3.2e-11 Score=140.68 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=174.6
Q ss_pred ccccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCC--------cceeEeecCCCCCCCCCCCCCCCcEEE
Q 000703 11 SWDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRS--------LQLISTIPIPPPTSAGSVASLSPFVTA 80 (1342)
Q Consensus 11 ~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s--------~~~~~~l~~H~~~~~~~~~~~~~~Vt~ 80 (1342)
.|.=+++|-. |-+.+.+..+.|.- .|++|+ ++.+.+|+.+. .+.+.+|.+|.+ +|-|
T Consensus 283 ~w~ik~tl~s--~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----------PVl~ 349 (577)
T KOG0642|consen 283 KWNIKFTLRS--HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----------PVLC 349 (577)
T ss_pred ecceeeeeec--chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-----------ceEE
Confidence 4877776666 56678888998864 788886 57889999821 346889999999 9999
Q ss_pred EEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC------CC---eEEEEecCCCCCCCCeeEEEEeecCCCCcE
Q 000703 81 VKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR------LR---SVVLWIDPDPNPKLGIQDLCWIVSKPDSFV 151 (1342)
Q Consensus 81 v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~------~g---~~~~~l~~~~h~~~~V~~l~wsp~~~~~~l 151 (1342)
|..++. +..+.||+.||+|+.|++. +. ..+... +.||++ .|..+++++.. +.
T Consensus 350 v~v~~n--------------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~-l~Ghtd-avw~l~~s~~~---~~ 410 (577)
T KOG0642|consen 350 VVVPSN--------------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT-LLGHTD-AVWLLALSSTK---DR 410 (577)
T ss_pred EEecCC--------------ceEEEeeccCceeeeeccCCCCCcccccCcchhccc-eecccc-ceeeeeecccc---cc
Confidence 999875 5779999999999999442 21 122221 479999 99999999876 67
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEeCC--CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcc
Q 000703 152 LAAINGPSVLSLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCT 229 (1342)
Q Consensus 152 Las~s~d~~i~lWd~~tg~~i~~~~~~--~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~ 229 (1342)
|++++.||++++|+.....+ ..+... .+...+|.|--.+..+..+. ..+...++... .+...+.+.
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~----ev~s~~~~~---- 478 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDM----EVVSDLLIF---- 478 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhh----hhhhheeec----
Confidence 99999999999999865554 222221 23334555533222222222 22222111100 001111110
Q ss_pred hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCC
Q 000703 230 ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN 309 (1342)
Q Consensus 230 ~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg 309 (1342)
. .+ +.|... ....+..+.-.|.....+++..|+.|+++|-.++..+.....+ ...+.+++..|+|
T Consensus 479 -----~-----s~--~~~~~~-~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~--~~svtslai~~ng 543 (577)
T KOG0642|consen 479 -----E-----SS--ASPGPR-RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH--KDSVTSLAIDPNG 543 (577)
T ss_pred -----c-----cc--CCCccc-ccCccceEEecCCCCeeEecccCCceecccccccccchheeec--cceecceeecCCC
Confidence 0 00 011100 1123556677888877788889999999999999998766543 4678889999999
Q ss_pred CEEEEEeCCCcEEEEEccCC
Q 000703 310 DLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 310 ~~L~s~~~DgtI~lW~~~~g 329 (1342)
.+|++++.|++|++|.....
T Consensus 544 ~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceEEeecCCceeehhhccch
Confidence 99999999999999987643
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.28 E-value=6.9e-10 Score=136.00 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=156.4
Q ss_pred eEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE
Q 000703 45 SISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV 123 (1342)
Q Consensus 45 ~V~v~d~~s~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~ 123 (1342)
.+.||+..+. ..-.++.-. +.|++++|+|.. ..+||.|..+|.|.+||++.+..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~------------s~v~~~~f~p~~-------------p~ll~gG~y~GqV~lWD~~~~~~ 277 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESP------------SEVTCLKFCPFD-------------PNLLAGGCYNGQVVLWDLRKGSD 277 (555)
T ss_pred eEEEEecCCCCCceEEEecC------------CceeEEEeccCC-------------cceEEeeccCceEEEEEccCCCC
Confidence 4678887764 333344322 379999999974 57899999999999999988765
Q ss_pred --EEEec--CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE------EEEEe------CCCCceEEEEe
Q 000703 124 --VLWID--PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC------MWKYD------ASPEYLSCIRR 187 (1342)
Q Consensus 124 --~~~l~--~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~------i~~~~------~~~~~v~~v~f 187 (1342)
...+. ...|.. +|..+.|..+... .=+++++.||.|..|+++-=.. .-... ...-.++++.|
T Consensus 278 ~~~s~ls~~~~sh~~-~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 278 TPPSGLSALEVSHSE-PVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF 355 (555)
T ss_pred CCCcccccccccCCc-CeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEee
Confidence 22221 245777 9999999987533 4577888899999998762111 00000 11235689999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000703 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1342)
Q Consensus 188 sP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ 267 (1342)
.|.++.++.+|+..|.|+.-.-.+..+...... +.+ .....+.+.+..+.++|=+..
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~--------------~~~---------~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY--------------KGH---------STFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccc--------------ccc---------ccccccCcceEeeecCCCccc
Confidence 999999999999999998733222111000000 000 001123345677799998877
Q ss_pred eEEEEcCCeEEEEEcc-CCceeEEEecCCCccceEEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 000703 268 IIFVTFPRELVVFDLQ-YETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 268 ll~~~~d~~I~iwDl~-t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~ 328 (1342)
+...+.|-+|+||.-. ...++- ........+.++++||-+. .+|++..||.|-|||...
T Consensus 413 ~fls~gDW~vriWs~~~~~~Pl~--~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASPLL--SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeeeeccceeEeccccCCCCcch--hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 7777779999999988 334432 2344455588899999876 677788899999999863
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.1e-06 Score=104.87 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=113.4
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE---------EE----EecCCCCCCCCeeEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV---------VL----WIDPDPNPKLGIQDLCWI 143 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~---------~~----~l~~~~h~~~~V~~l~ws 143 (1342)
...++.|.-+ ..++|.|+.||.++|-.+.+... .. .-.+.||.+ +|.-+.|.
T Consensus 16 kL~c~~WNke--------------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWN 80 (1189)
T KOG2041|consen 16 KLHCAEWNKE--------------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWN 80 (1189)
T ss_pred eEEEEEEccc--------------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEec
Confidence 6789999865 35899999999999997754221 11 112578988 99999998
Q ss_pred ecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe--CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeee
Q 000703 144 VSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD--ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKE 221 (1342)
Q Consensus 144 p~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~--~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~ 221 (1342)
-.. +.|.+...+|.|.+|=+-.|.=.-.+. .....|.+++|+. ||.++|....||.|.+=.+.| ..+-+|+
T Consensus 81 e~~---QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdG---NRIwgKe 153 (1189)
T KOG2041|consen 81 ENN---QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDG---NRIWGKE 153 (1189)
T ss_pred ccc---ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecc---ceecchh
Confidence 765 788889999999999987775221222 1245788999998 999999999999998743322 1111222
Q ss_pred EEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccC
Q 000703 222 LQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQY 284 (1342)
Q Consensus 222 ~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t 284 (1342)
+ ++. ...-+.+|||.+.+++....+++.++|-+-
T Consensus 154 L------------kg~-----------------~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 154 L------------KGQ-----------------LLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred c------------chh-----------------eccceeecccHHHHHhhhcCCcEEEecccc
Confidence 1 110 112347999999999999999999999764
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.26 E-value=8.9e-10 Score=119.45 Aligned_cols=272 Identities=15% Similarity=0.215 Sum_probs=173.9
Q ss_pred CCCEEEEEe----CCCcEEEEeCC--CCcEEEEe-eecCCCeEEEEEcCCC-----cEEEEecCCcccccCcccCEEEEE
Q 000703 528 AVPLVALGT----QSGAVDVVDVS--ANAVTASF-SVHNGTVRGLRWLGNS-----RLVSFSYSQVNEKSGGYINRLVVT 595 (1342)
Q Consensus 528 ~~~llAsGs----~DGtI~lWDl~--tg~~~~~l-~gH~~~V~~l~fs~d~-----~llS~s~d~~~~~sg~~~~~i~lw 595 (1342)
.+.+||.|+ ....|+|-.+. +++.+..- .-|..+++.+.|.|+. .+++.+.| .+|||
T Consensus 58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-----------~LRlW 126 (364)
T KOG0290|consen 58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-----------FLRLW 126 (364)
T ss_pred cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC-----------eEEEE
Confidence 456889887 34566666553 44433211 3688999999999875 34544333 69999
Q ss_pred EcCC--CceeeeEEe----ccCCCCCeEEEEEcC-CCCEEEEEECCCCEEEEeccCCcce--eee----ccCceEEEEEc
Q 000703 596 CLRS--GINRAFRVL----QKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIM--LRS----LALPFTVLEWT 662 (1342)
Q Consensus 596 D~~t--G~~~~l~~l----~g~h~~~I~~i~~Sp-dg~~Las~s~D~tIkvWDl~kt~~~--l~~----l~~~vt~l~ws 662 (1342)
.+.. ++..+...+ ...+.+|+++..|.. |-+++.+.|-|-|..|||+ .++.. +++ ..+.|..++|.
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi-e~~~~~~vkTQLIAHDKEV~DIaf~ 205 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI-ETGVSGTVKTQLIAHDKEVYDIAFL 205 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE-eeccccceeeEEEecCcceeEEEec
Confidence 8863 221111111 112557899988885 6789999999999999999 56522 111 12356667775
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeecc
Q 000703 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDF 742 (1342)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~ 742 (1342)
. +..+.||+.+.||++|+||++...-...
T Consensus 206 ~---------------------------------------------------~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 206 K---------------------------------------------------GSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred c---------------------------------------------------CccceEEEecCCCcEEEEEecccccceE
Confidence 2 1246899999999999999953211100
Q ss_pred CCCCCCCccccccceEEEEee---cCCEEEEEeC-CCcEEEEECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEE
Q 000703 743 RPKWPSSSFISSDGLITAMAY---RLPHVVMGDR-SGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIA 816 (1342)
Q Consensus 743 ~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~-DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~La 816 (1342)
.+.-|. ......-++| |-+++|+-.. ...|.+-|++.-. ...+.+|++.|..|+|.|... ..|.
T Consensus 235 IYE~p~-----~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~-----~hic 304 (364)
T KOG0290|consen 235 IYEDPS-----PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS-----SHIC 304 (364)
T ss_pred EecCCC-----CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----ceee
Confidence 011111 0123567888 5567776443 3568899998643 567899999999999999843 6899
Q ss_pred EEECCCeEEEEECCCCCc--ccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEE
Q 000703 817 VLFHDNTFSVFDLDSQDP--LANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLI 879 (1342)
Q Consensus 817 s~s~DgtI~IWDl~t~~~--l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvW 879 (1342)
+++.|..+-|||+.+.-. +...++ .-..++.|..+.|++. .++ +|+. ..++++.+.
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPil-ay~a~~EVNqi~Ws~~---~~D--wiai-~~~kkleiL 362 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPIL-AYTAGGEVNQIQWSSS---QPD--WIAI-CFGKKLEIL 362 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchh-hhhccceeeeeeeccc---CCC--EEEE-EecCeeeEE
Confidence 999999999999976431 111110 1113478999999986 223 5544 345555554
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.1e-07 Score=114.68 Aligned_cols=295 Identities=17% Similarity=0.128 Sum_probs=159.1
Q ss_pred CCCceEeCCCC-eEEEEc-----CCeEEEEe-CCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 26 NFGSADLSPSG-LLAFAS-----GSSISILD-SRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs-----~~~V~v~d-~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
...-+.|+|.- ++|.++ +++|-|+- .-..+.--+.+- .+++++|+|.-
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~--------------hatSLCWHpe~----------- 71 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPV--------------HATSLCWHPEE----------- 71 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccce--------------ehhhhccChHH-----------
Confidence 34567899987 777653 67888873 222222222222 46789999974
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeE----EE
Q 000703 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASC----MW 173 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~----i~ 173 (1342)
..||+|=.-|.+-+|...+.+.... ...|.. +|+.+.||++| ..|.+++..|.+.+|..+ -|+. +.
T Consensus 72 ---~vLa~gwe~g~~~v~~~~~~e~htv--~~th~a-~i~~l~wS~~G---~~l~t~d~~g~v~lwr~d~~g~~q~~~~~ 142 (1416)
T KOG3617|consen 72 ---FVLAQGWEMGVSDVQKTNTTETHTV--VETHPA-PIQGLDWSHDG---TVLMTLDNPGSVHLWRYDVIGEIQTSNIM 142 (1416)
T ss_pred ---HHHhhccccceeEEEecCCceeeee--ccCCCC-CceeEEecCCC---CeEEEcCCCceeEEEEeeeccccccchhh
Confidence 5699999999999999877654433 245777 99999999988 899999999999999764 1321 21
Q ss_pred EEeCCCC--ceEEEEecCCCC------CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCC
Q 000703 174 KYDASPE--YLSCIRRNPFDA------RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASL 245 (1342)
Q Consensus 174 ~~~~~~~--~v~~v~fsP~d~------~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~ 245 (1342)
+... .+ ...|++.+| ++ .+.++.+++..+ +.+. .|...+
T Consensus 143 ~hel-~~~ltl~cfRL~~-~~Ee~~~laKaaVtgDe~al---------------------------D~~f-nwk~~~--- 189 (1416)
T KOG3617|consen 143 QHEL-NDQLTLWCFRLSY-DREEKFKLAKAAVTGDESAL---------------------------DEPF-NWKESL--- 189 (1416)
T ss_pred hhHh-hceeeEEEEecCC-ChHHhhhhhhhhccCchhhh---------------------------cccc-cCccch---
Confidence 2222 12 334666666 32 222232322111 1000 010000
Q ss_pred CCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000703 246 SPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1342)
Q Consensus 246 ~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1342)
+ ...... .=+|+|.-.++++.+|+|.--|-. |+...+..+. ..+++.|-+-.+.|.+.-+|-++.+.=
T Consensus 190 --a---~rs~~k--sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d----S~vQmLf~~~~eai~~i~e~lr~~l~~ 257 (1416)
T KOG3617|consen 190 --A---ERSDEK--SGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD----SEVQMLFMGYCEAISIIIEFLRDCLIF 257 (1416)
T ss_pred --h---hccccc--cCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEcc----chHHHHHhcccceEEEEeeeceeeEEE
Confidence 0 000000 125677777888889998877744 3333333322 223444555556666666666666554
Q ss_pred c-cCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEE
Q 000703 326 R-KEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHL 404 (1342)
Q Consensus 326 ~-~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 404 (1342)
. .+|...- .|. ..+...+ +++--.++.+-+..+ .+++-.+.+..--.|.|-.+.+.+.+|
T Consensus 258 v~~~G~~ee-~~~--vk~sgk~----GgrqGgiA~sEssGv------------Lr~~eKyg~e~ge~~~c~cY~~~~~~l 318 (1416)
T KOG3617|consen 258 VLAKGTSEE-RCA--VKVSGKL----GGRQGGIACSESSGV------------LRKSEKYGLELGEGILCMCYGEKEIRL 318 (1416)
T ss_pred ecCCCchHH-hhh--hhhcccc----CCccCcccccccccc------------ccCCcchhhhcCCceEEEEEeccceEE
Confidence 3 2332100 000 0000000 000000111111111 122212333444566777777778899
Q ss_pred EEEEcCCcEEEEEc
Q 000703 405 ISISDDGKVWNWLL 418 (1342)
Q Consensus 405 as~s~DG~v~lWdl 418 (1342)
+.+...|++.+|.-
T Consensus 319 ~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 319 WAGTKEGNVTIWLD 332 (1416)
T ss_pred EecccCCcEEEeee
Confidence 99999999999953
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=1.1e-09 Score=136.94 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=126.5
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC-----Ce--EEEEEeCCCCceEEEEec
Q 000703 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS-----AS--CMWKYDASPEYLSCIRRN 188 (1342)
Q Consensus 116 WD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t-----g~--~i~~~~~~~~~v~~v~fs 188 (1342)
|+. .|..+..+ ..|+. .|..++-++.. +.+++|++.||+|++||... |. ...++......+.++.+-
T Consensus 1034 W~p-~G~lVAhL--~Ehs~-~v~k~a~s~~~--~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL--HEHSS-AVIKLAVSSEH--TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh--hhccc-cccceeecCCC--CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 776 46777764 67777 78888887754 37999999999999999762 21 222333224577778777
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE-EEccCCC-
Q 000703 189 PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF-TFSPHWR- 266 (1342)
Q Consensus 189 P~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~-aFSpdg~- 266 (1342)
+ .+..+|+++.||.|.+.++.-. ..+++.+. -.+. |. ....+.+++| +|..+-+
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~-----~~~~~~~~-----~~ri------------~n-~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHY-----NVSKRVAT-----QVRI------------PN-LKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccc-----ccccceee-----eeec------------cc-ccCCCceEEeecccccccc
Confidence 7 8899999999999999765321 01111110 0000 00 0111123333 4443333
Q ss_pred -ceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 267 -HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 267 -~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
.++++..-+.|..||+.+...+..+...-.++-+.+++.+|-+.+++.|..-|.+-+||.+=+..+..+
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 466677778999999998777666555444577888999999999999999999999999866544433
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=5.2e-10 Score=118.43 Aligned_cols=136 Identities=17% Similarity=0.272 Sum_probs=99.8
Q ss_pred CCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee-ee--c
Q 000703 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS-QF--S 791 (1342)
Q Consensus 717 ~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~-~l--~ 791 (1342)
...+.+++.|+.++-||++..+++. .+.||+..|.+++- ....+.+|+.||++|+||+++++.. .+ .
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r--------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQR--------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEE--------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 3456777899999999998777642 24489999999988 4457999999999999999998743 22 1
Q ss_pred c--------ccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCC
Q 000703 792 T--------HREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKND 863 (1342)
Q Consensus 792 ~--------H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~ 863 (1342)
. -..||.+++-+.+ .| +++....+.+|.+++.++. ..+ +. .+.|..++|..+
T Consensus 198 k~~~~lRp~~g~wigala~~ed--------Wl-vCGgGp~lslwhLrsse~t-~vf--pi--pa~v~~v~F~~d------ 257 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAVNED--------WL-VCGGGPKLSLWHLRSSEST-CVF--PI--PARVHLVDFVDD------ 257 (325)
T ss_pred cChhhcCcccCceeEEEeccCc--------eE-EecCCCceeEEeccCCCce-EEE--ec--ccceeEeeeecc------
Confidence 1 2356777776544 34 4556777999999988753 222 11 156889999865
Q ss_pred CeEEEEEeCCCcEEEEEcc
Q 000703 864 PLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 864 ~~~L~s~s~DgtIrvWdi~ 882 (1342)
.++++|..+.+.-|.+.
T Consensus 258 --~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 258 --CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred --eEEEeccccceeeeeec
Confidence 46688889999999876
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.8e-09 Score=131.91 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=147.3
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEE
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~ 618 (1342)
..|.+||...+ ..+.+..+...+...+|+|||+.+++.... ..+..|.+||+.+|+.+.+..+.+ .+..
T Consensus 179 ~~l~~~d~dg~-~~~~lt~~~~~~~~p~wSPDG~~la~~s~~------~g~~~i~i~dl~~G~~~~l~~~~~----~~~~ 247 (429)
T PRK03629 179 YELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFE------SGRSALVIQTLANGAVRQVASFPR----HNGA 247 (429)
T ss_pred eeEEEEcCCCC-CCEEeecCCCceeeeEEcCCCCEEEEEEec------CCCcEEEEEECCCCCeEEccCCCC----CcCC
Confidence 37999998644 345566677789999999999766654321 113579999999997555543322 3456
Q ss_pred EEEcCCCCEEEEE-ECCC--CEEEEeccCCcceeeeccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 619 LRASSSGRYLLIL-FRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 619 i~~Spdg~~Las~-s~D~--tIkvWDl~kt~~~l~~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
.+|||||++|+.. ..++ .|.+||+ +++...+.... .+....|+|+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~-~tg~~~~lt~~~~~~~~~~wSPD----------------------------- 297 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDL-ASGQIRQVTDGRSNNTEPTWFPD----------------------------- 297 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEEC-CCCCEEEccCCCCCcCceEECCC-----------------------------
Confidence 8999999998865 4454 4888898 67655432221 2345666654
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEecC-CC--EEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALAN-GA--LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~D-gt--I~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~L 768 (1342)
++.+++.+.+ |. |+++++++...+.+. +. + +.....+| ||++|
T Consensus 298 -----------------------G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt--~~-----~--~~~~~~~~SpDG~~I 345 (429)
T PRK03629 298 -----------------------SQNLAYTSDQAGRPQVYKVNINGGAPQRIT--WE-----G--SQNQDADVSSDGKFM 345 (429)
T ss_pred -----------------------CCEEEEEeCCCCCceEEEEECCCCCeEEee--cC-----C--CCccCEEECCCCCEE
Confidence 3456666543 44 444455554443210 11 1 12223444 99998
Q ss_pred EEEeCC---CcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCe---EEEEECCCCCcccccccCC
Q 000703 769 VMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNT---FSVFDLDSQDPLANSLLQP 842 (1342)
Q Consensus 769 asGs~D---gtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dgt---I~IWDl~t~~~l~~~l~~g 842 (1342)
+..+.+ ..|.+||+.++..+.+.. ........|||| | ++|+.++.|+. +.+|+++.+.. ..+ .+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpD--G----~~i~~~s~~~~~~~l~~~~~~G~~~--~~l-~~ 415 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPN--G----TMVIYSSSQGMGSVLNLVSTDGRFK--ARL-PA 415 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCC--C----CEEEEEEcCCCceEEEEEECCCCCe--EEC-cc
Confidence 876654 358899999888666542 223457889999 5 77888877764 67778865542 223 34
Q ss_pred CCCCCcEEEEEEeCC
Q 000703 843 QFPGTLVLELDWLPT 857 (1342)
Q Consensus 843 h~~~~~V~~l~ws~d 857 (1342)
|. +.+.+.+|+|.
T Consensus 416 ~~--~~~~~p~Wsp~ 428 (429)
T PRK03629 416 TD--GQVKFPAWSPY 428 (429)
T ss_pred CC--CCcCCcccCCC
Confidence 43 56888999983
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.20 E-value=9.1e-10 Score=121.05 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=167.7
Q ss_pred CCceEeCCCC-eEEEEcCC-eEEEEeCCCc---ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCC
Q 000703 27 FGSADLSPSG-LLAFASGS-SISILDSRSL---QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~-~V~v~d~~s~---~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
+.|-+|++|+ .+|.+..+ -|.|+..... +..++|..|.. .|++|.|+|. .
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-----------~vtgvdWap~--------------s 67 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-----------IVTGVDWAPK--------------S 67 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-----------ceeEEeecCC--------------C
Confidence 6799999998 78887654 7888876554 46899999998 8999999986 4
Q ss_pred cEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE-----EE
Q 000703 102 LLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-----KY 175 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~-~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-----~~ 175 (1342)
.+|++++.|....||.. ..|+...++.+..+.+ ..+++.|+|.. +.+|++++...|.+|-.+ ++.-| ..
T Consensus 68 nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNr-AAt~V~WsP~e---nkFAVgSgar~isVcy~E-~ENdWWVsKhik 142 (361)
T KOG1523|consen 68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR-AATCVKWSPKE---NKFAVGSGARLISVCYYE-QENDWWVSKHIK 142 (361)
T ss_pred CceeEccCCCCccccccCCCCeeccceeEEEecc-ceeeEeecCcC---ceEEeccCccEEEEEEEe-cccceehhhhhC
Confidence 78999999999999998 5566555555555666 89999999987 789999999999999885 33334 11
Q ss_pred eCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe-cCcc-----hhhhhhhhhccccCCCCCCC
Q 000703 176 DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ-TDCT-----ELLKLERELSAGAASLSPAS 249 (1342)
Q Consensus 176 ~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~-~~~~-----~l~~l~~~~~~~s~~~~p~~ 249 (1342)
.-....|+++.|.| ++-.+++++.|+..+++..- +|++.-. ...+ ....|..+++
T Consensus 143 kPirStv~sldWhp-nnVLlaaGs~D~k~rVfSay--------IK~Vdekpap~pWgsk~PFG~lm~E~~---------- 203 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAY--------IKGVDEKPAPTPWGSKMPFGQLMSEAS---------- 203 (361)
T ss_pred CccccceeeeeccC-CcceecccccCcceeEEEEe--------eeccccCCCCCCCccCCcHHHHHHhhc----------
Confidence 22256889999999 88999999999999986321 2221100 0000 1223333221
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCc-eeEEEecCCCccceEEEEEcCCCC
Q 000703 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYET-PLFSAALPRGCAKFLDVLADPNND 310 (1342)
Q Consensus 250 ~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~-~l~~~~l~~~~~~~~~v~~~pdg~ 310 (1342)
...+++..+.|||+|..|+..+.|..+.+=|..... .+..+.. ..-|+.++.+..+..
T Consensus 204 -~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~--~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 204 -SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT--AQLPLLSVSWISENS 262 (361)
T ss_pred -cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh--ccCCceeeEeecCCc
Confidence 134578899999999999999999999999987654 2332322 235677776654443
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=5e-08 Score=116.38 Aligned_cols=337 Identities=11% Similarity=0.067 Sum_probs=184.0
Q ss_pred cEE-EEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc
Q 000703 150 FVL-AAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC 228 (1342)
Q Consensus 150 ~lL-as~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~ 228 (1342)
+++ ++-.+++.|.+.|..+.+.+.++......-..+.|+| |++.+.+.+.||.|.++|+.... ..+++.+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~----~v~~i~~---- 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGK----VVATIKV---- 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSS----EEEEEE-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCccc----EEEEEec----
Confidence 444 4556789999999999999988876444444578999 99999999999999999975421 1333321
Q ss_pred chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEecCCC-----ccceEE
Q 000703 229 TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRG-----CAKFLD 302 (1342)
Q Consensus 229 ~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l~~~-----~~~~~~ 302 (1342)
-.....+++||||+.++.+. .++.+.|+|.++.+.+..++.... .+.+..
T Consensus 77 ------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 77 ------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp ------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred ------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCcee
Confidence 01245679999999998776 689999999999999988865321 234667
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEccCCceeee-EeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCC
Q 000703 303 VLADPNNDLLYCAH-LDGKLSIWRRKEGEQVHV-MCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSP 380 (1342)
Q Consensus 303 v~~~pdg~~L~s~~-~DgtI~lW~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~ 380 (1342)
+..+|.++.++..- +-+.|.+-|......+.. ... .|. ......+.|
T Consensus 133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-------~g~-----~~~D~~~dp------------------- 181 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-------VGR-----FPHDGGFDP------------------- 181 (369)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------T-----TEEEEEE-T-------------------
T ss_pred EEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-------ccc-----cccccccCc-------------------
Confidence 88888888554444 447665556543321111 100 000 111111222
Q ss_pred CCccccCCCCcccccccccCccEEEE-EEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCcCcCcce
Q 000703 381 SANVDIDSPFEFSDDTLLLSKTHLIS-ISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQ 459 (1342)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~las-~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~ 459 (1342)
++++++. ...+..|-++|.++.+...... .|....
T Consensus 182 -------------------dgry~~va~~~sn~i~viD~~~~k~v~~i~----------------~g~~p~--------- 217 (369)
T PF02239_consen 182 -------------------DGRYFLVAANGSNKIAVIDTKTGKLVALID----------------TGKKPH--------- 217 (369)
T ss_dssp -------------------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------------SSSBE---------
T ss_pred -------------------ccceeeecccccceeEEEeeccceEEEEee----------------cccccc---------
Confidence 2445544 4456688889887654321100 010000
Q ss_pred eeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccC--cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeC
Q 000703 460 ALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILS--STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQ 537 (1342)
Q Consensus 460 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~--~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~ 537 (1342)
.+. ..+. -|. +++++..- .+....+.-.
T Consensus 218 --------------------------~~~----~~~~--php~~g~vw~~~~------------------~~~~~~~~ig 247 (369)
T PF02239_consen 218 --------------------------PGP----GANF--PHPGFGPVWATSG------------------LGYFAIPLIG 247 (369)
T ss_dssp --------------------------ETT----EEEE--EETTTEEEEEEEB------------------SSSSEEEEEE
T ss_pred --------------------------ccc----cccc--cCCCcceEEeecc------------------ccceeccccc
Confidence 000 0000 011 22332220 1111211222
Q ss_pred CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeE
Q 000703 538 SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIR 617 (1342)
Q Consensus 538 DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~ 617 (1342)
.+.+.+||..+.+.++++...... -.+..+|+++.+-...- .+...++|.|+|.++-+ ....+......++.
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~-----~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTF-----LNPDADTVQVIDKKTLK--VVKTITPGPGKRVV 319 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-T-----T-SSHT-EEEEECCGTE--EEE-HHHHHT--EE
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeecc-----CCCCCceEEEEECcCcc--eeEEEeccCCCcEe
Confidence 335668999999999999887666 67888999987766521 11225689999998875 33433221223488
Q ss_pred EEEEcCCCCEEEEEECCC--CEEEEeccCCcceeeecc
Q 000703 618 ALRASSSGRYLLILFRDA--PVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 618 ~i~~Spdg~~Las~s~D~--tIkvWDl~kt~~~l~~l~ 653 (1342)
.+.|++||+++-....++ .|.|+|. ++.+.++.++
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~-~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDA-KTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEET-TTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEEE
Confidence 999999999876665443 6999999 7988877654
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=5.4e-08 Score=116.09 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=123.8
Q ss_pred cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC
Q 000703 42 SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR 121 (1342)
Q Consensus 42 s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g 121 (1342)
.+++|.|+|..+.+.+.+++.... .-..++|+|| |+++.++++||.|.++|+.++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-----------~h~~~~~s~D--------------gr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-----------PHAGLKFSPD--------------GRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-----------EEEEEE-TT---------------SSEEEEEETTSEEEEEETTSS
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-----------ceeEEEecCC--------------CCEEEEEcCCCeEEEEECCcc
Confidence 468999999999999999986553 3344678876 577888899999999999999
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCCcEEE-EEeCCCeEEEEECCCCeEEEEEeCC-------CCceEEEEecCCCCC
Q 000703 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLA-AINGPSVLSLYNTTSASCMWKYDAS-------PEYLSCIRRNPFDAR 193 (1342)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLa-s~s~d~~i~lWd~~tg~~i~~~~~~-------~~~v~~v~fsP~d~~ 193 (1342)
+.+.++.. | . .-.++++++++ ++++ +...++.+.++|+.|.+++..+... ...+..+..+|+...
T Consensus 69 ~~v~~i~~-G--~-~~~~i~~s~DG---~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 69 KVVATIKV-G--G-NPRGIAVSPDG---KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp SEEEEEE--S--S-EEEEEEE--TT---TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred cEEEEEec-C--C-CcceEEEcCCC---CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 99988744 2 2 46789999987 5555 4557899999999999988766432 124567778885544
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-
Q 000703 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT- 272 (1342)
Q Consensus 194 ~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~- 272 (1342)
.++..-..+.|.+.|..... ....+.+.+ ........|+|++|+++.+.
T Consensus 142 fVv~lkd~~~I~vVdy~d~~--~~~~~~i~~----------------------------g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPK--NLKVTTIKV----------------------------GRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEETTTTEEEEEETTTSS--CEEEEEEE------------------------------TTEEEEEE-TTSSEEEEEEG
T ss_pred EEEEEccCCeEEEEEecccc--ccceeeecc----------------------------cccccccccCcccceeeeccc
Confidence 55555556888887764421 111111110 00234568999999887765
Q ss_pred cCCeEEEEEccCCceeEEEe
Q 000703 273 FPRELVVFDLQYETPLFSAA 292 (1342)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~ 292 (1342)
..+.|-++|+++++.+..+.
T Consensus 192 ~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE
T ss_pred ccceeEEEeeccceEEEEee
Confidence 57899999999887665443
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=8.2e-09 Score=126.54 Aligned_cols=212 Identities=15% Similarity=0.165 Sum_probs=129.5
Q ss_pred ccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC---CCEEEEeccCCcceee--eccCceEEEEEc
Q 000703 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD---APVEVWAMTKNPIMLR--SLALPFTVLEWT 662 (1342)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D---~tIkvWDl~kt~~~l~--~l~~~vt~l~ws 662 (1342)
...+|++||...+..+.+. . +...+...+|||||++|+.++.+ ..|.+||+ .+++... .+........|+
T Consensus 182 ~~~~l~i~D~~g~~~~~lt---~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl-~~g~~~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 182 MRYALQVADSDGYNPQTIL---R-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL-ATGQRELVASFRGINGAPSFS 256 (433)
T ss_pred ceEEEEEECCCCCCceEee---c-CCCccccccCCCCCCEEEEEecCCCCcEEEEEEC-CCCCEEEeccCCCCccCceEC
Confidence 3457999998655433332 2 45678899999999999988743 35999999 5665432 122122245566
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEE-EecCC--CEEEEEecCCee
Q 000703 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF-ALANG--ALGVFEVHGRRI 739 (1342)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~-~~~Dg--tI~lwdv~g~~v 739 (1342)
|+ ++.+++ .+.+| .|++||+.+..+
T Consensus 257 pD----------------------------------------------------G~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 257 PD----------------------------------------------------GRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred CC----------------------------------------------------CCEEEEEEeCCCCceEEEEECCCCCe
Confidence 54 344443 34445 588999876655
Q ss_pred eccCCCCCCCccccccceEEEEee--cCCEEEEEe-CCCc--EEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCE
Q 000703 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGD-RSGN--IRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 740 ~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs-~Dgt--I~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~ 814 (1342)
+.+. .+.+....++| ||+.|+..+ .+|. |.++|+.+++.+.+..+......++|||+ | ++
T Consensus 285 ~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD--G----~~ 349 (433)
T PRK04922 285 TRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPD--G----KK 349 (433)
T ss_pred EECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC--C----CE
Confidence 4321 12222345566 899888765 4555 77778877776555444455667899999 5 67
Q ss_pred EEEEECCC---eEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCc--EEEEEcc
Q 000703 815 IAVLFHDN---TFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS--FRLIEVN 882 (1342)
Q Consensus 815 Las~s~Dg---tI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~Dgt--IrvWdi~ 882 (1342)
|+....++ .|.+||+.+++.. .+..+ .......|+|+ |+.+ +.+....+. |.++++.
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~~----~~~~~p~~spd----G~~i-~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR--TLTPG----SLDESPSFAPN----GSMV-LYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE--ECCCC----CCCCCceECCC----CCEE-EEEEecCCceEEEEEECC
Confidence 77664432 6999999887632 23222 23456789998 5532 333333344 4455553
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=9.8e-09 Score=125.95 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=146.2
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEE
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~ 618 (1342)
..|.+||.. |...+.+..|...|...+|+|||+.|.+.... .+ +..|.+||+.+|+.+.+.. +...+.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~g--~~~i~~~dl~~g~~~~l~~----~~g~~~~ 250 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----NG--RPRVYLLDLETGQRELVGN----FPGMTFA 250 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEec----CC--CCEEEEEECCCCcEEEeec----CCCcccC
Confidence 478899984 55557788888899999999999766554421 11 3589999999998544432 3446678
Q ss_pred EEEcCCCCEEE-EEECCCC--EEEEeccCCcceeeeccCc--eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 619 LRASSSGRYLL-ILFRDAP--VEVWAMTKNPIMLRSLALP--FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 619 i~~Spdg~~La-s~s~D~t--IkvWDl~kt~~~l~~l~~~--vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
.+|||||+.|+ +.+.++. |.+||+ .++...+....+ .+...|+|+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~-~~~~~~~Lt~~~~~~~~~~~spD----------------------------- 300 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDL-RSGTTTRLTDSPAIDTSPSYSPD----------------------------- 300 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEEC-CCCceEEccCCCCccCceeEcCC-----------------------------
Confidence 89999999876 5566666 556687 565443321111 233455544
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEec-CC--CEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~-Dg--tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~L 768 (1342)
++.+++.+. +| .|+++++++..++.+. .+.+.+...+| ||+.|
T Consensus 301 -----------------------G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 301 -----------------------GSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred -----------------------CCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcccCeEECCCCCEE
Confidence 455666553 33 5778888766553321 01122444555 99999
Q ss_pred EEEeCC---CcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECC------CeEEEEECCCCCcccccc
Q 000703 769 VMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD------NTFSVFDLDSQDPLANSL 839 (1342)
Q Consensus 769 asGs~D---gtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~D------gtI~IWDl~t~~~l~~~l 839 (1342)
+..+.+ ..|.+||+.++..+.+. +...+....|+|| | +.|+..+.+ ..+.+.|++.+.. ..+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spD--G----~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l 419 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPN--G----RVIMFFRQTPGSGGAPKLYTVDLTGRNE--REV 419 (435)
T ss_pred EEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCC--C----CEEEEEEccCCCCCcceEEEEECCCCce--EEc
Confidence 887654 36888998766554443 2345788999999 5 666665442 2577778876652 122
Q ss_pred cCCCCCCCcEEEEEEeCC
Q 000703 840 LQPQFPGTLVLELDWLPT 857 (1342)
Q Consensus 840 ~~gh~~~~~V~~l~ws~d 857 (1342)
. . .+.+...+|+|.
T Consensus 420 -~-~--~~~~~~p~Wsp~ 433 (435)
T PRK05137 420 -P-T--PGDASDPAWSPL 433 (435)
T ss_pred -c-C--CCCccCcccCCC
Confidence 1 1 134677889874
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.2e-08 Score=124.71 Aligned_cols=211 Identities=13% Similarity=0.149 Sum_probs=133.4
Q ss_pred ccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEEC---CCCEEEEeccCCcce--eeeccCceEEEEEc
Q 000703 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR---DAPVEVWAMTKNPIM--LRSLALPFTVLEWT 662 (1342)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~---D~tIkvWDl~kt~~~--l~~l~~~vt~l~ws 662 (1342)
+..+|.++|...+..+.+. . +...+...+|||||+.|+..+. +..|.+||+ .+++. +..++.......|+
T Consensus 177 ~~~~l~~~d~dg~~~~~lt---~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-~~G~~~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVH---R-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGAVRQVASFPRHNGAPAFS 251 (429)
T ss_pred cceeEEEEcCCCCCCEEee---c-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC-CCCCeEEccCCCCCcCCeEEC
Confidence 4558999998765533332 2 4467899999999999987653 346899998 56643 22333333456777
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEE-ecCC--CEEEEEecCCee
Q 000703 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA-LANG--ALGVFEVHGRRI 739 (1342)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~-~~Dg--tI~lwdv~g~~v 739 (1342)
|+ ++.+++. ..+| .|++||+++..+
T Consensus 252 PD----------------------------------------------------G~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 252 PD----------------------------------------------------GSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred CC----------------------------------------------------CCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 65 3445544 3344 488899876555
Q ss_pred eccCCCCCCCccccccceEEEEee--cCCEEEEEeCC-Cc--EEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCE
Q 000703 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRS-GN--IRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 740 ~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~D-gt--I~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~ 814 (1342)
+.+. .+...+...+| ||+.|+..+.+ |. |.++|+.++..+.+..+...+....|||| | ++
T Consensus 280 ~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD--G----~~ 344 (429)
T PRK03629 280 RQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD--G----KF 344 (429)
T ss_pred EEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC--C----CE
Confidence 4321 11123456666 99988776654 44 44557777776666555566778999999 5 67
Q ss_pred EEEEECC---CeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCc---EEEEEcc
Q 000703 815 IAVLFHD---NTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS---FRLIEVN 882 (1342)
Q Consensus 815 Las~s~D---gtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~Dgt---IrvWdi~ 882 (1342)
|+..+.+ ..|.+||+++++. ..+... .......|+|| |+ .|+.++.|+. +.++++.
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~----~~~~~p~~SpD----G~--~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGV--QVLTDT----FLDETPSIAPN----GT--MVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCe--EEeCCC----CCCCCceECCC----CC--EEEEEEcCCCceEEEEEECC
Confidence 7766543 4588899988862 223211 12346789998 55 4667777765 5556654
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=128.80 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=105.3
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~ 134 (1342)
.+...|..|++ .|+.|-|... |.+|+||+.|.+|.+||...+.....| ..||..
T Consensus 133 ~l~~kL~~H~G-----------cVntV~FN~~--------------Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~ 186 (559)
T KOG1334|consen 133 RLQKKLNKHKG-----------CVNTVHFNQR--------------GDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCN 186 (559)
T ss_pred hhhhcccCCCC-----------ccceeeeccc--------------CceeeccCccceEEeehhhccCccccc-cccccc
Confidence 34567889999 8999998864 689999999999999999999888887 468888
Q ss_pred CCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeEE--EEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCM--WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i--~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
-|..-.|.|...+ +.+++++.|+.+++=.+. +|.+. ..+.-|.+++.-++..|+++..|-++|.|+.++-+|++.
T Consensus 187 -NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 187 -NVFQAKFIPFSGD-RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred -chhhhhccCCCCC-cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 7888889998755 788999999999987654 44443 223445778999999999999999999999998877643
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.10 E-value=1.6e-09 Score=125.06 Aligned_cols=174 Identities=17% Similarity=0.357 Sum_probs=122.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec---cCceEEEEEcCCCCCCCCCCCCCCccccccCCCCC
Q 000703 611 PERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKA 687 (1342)
Q Consensus 611 ~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l---~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~ 687 (1342)
.|.+.|.+-+|+|||.-|++++.||.||+|. ++|-+-.++ +.++.+++|.|++
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS--rsGMLRStl~Q~~~~v~c~~W~p~S---------------------- 157 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS--RSGMLRSTVVQNEESIRCARWAPNS---------------------- 157 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEe--ccchHHHHHhhcCceeEEEEECCCC----------------------
Confidence 3788899999999999999999999999998 466332222 2468899998762
Q ss_pred ccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe--cCCeeeccCCCCCCCccccccceEEEEee--
Q 000703 688 DTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAY-- 763 (1342)
Q Consensus 688 i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv--~g~~v~d~~~~~~~~~~~~~~~~V~~va~-- 763 (1342)
+.++++ ..+.+.+=.+ +.+.+ +|. .|+|.|.++.|
T Consensus 158 ------------------------------~~vl~c-~g~h~~IKpL~~n~k~i-----~Wk-----AHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 158 ------------------------------NSIVFC-QGGHISIKPLAANSKII-----RWR-----AHDGLVLSLSWST 196 (737)
T ss_pred ------------------------------CceEEe-cCCeEEEeeccccccee-----EEe-----ccCcEEEEeecCc
Confidence 112222 2223333222 22222 122 58999999999
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCC
Q 000703 764 RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQ 843 (1342)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh 843 (1342)
..+++++|+.|-..++||-....+.+-..|..+|++|+|.|+ ...++++.. +.| +.+ +.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-------~~~~v~S~n-t~R---~~~----------p~ 255 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-------KDYLLWSYN-TAR---FSS----------PR 255 (737)
T ss_pred cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-------cceeeeeee-eee---ecC----------CC
Confidence 678999999999999999866556666789999999999999 455655443 333 111 11
Q ss_pred CCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEE
Q 000703 844 FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRL 878 (1342)
Q Consensus 844 ~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrv 878 (1342)
.+.|+.++|++| |. .++.|...|.+-+
T Consensus 256 --~GSifnlsWS~D----GT--Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 --VGSIFNLSWSAD----GT--QATCGTSTGQLIV 282 (737)
T ss_pred --ccceEEEEEcCC----Cc--eeeccccCceEEE
Confidence 157999999998 55 5677888776543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=8.1e-09 Score=126.58 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=144.4
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEE
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~ 618 (1342)
.+|.+||.. |...+.+..|...|.+.+|+||++.+.+.... ..+..|.+||+.+|+.+.+.. ......+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~------~~~~~l~~~dl~~g~~~~l~~----~~g~~~~ 252 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFE------RGRSAIYVQDLATGQRELVAS----FRGINGA 252 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecC------CCCcEEEEEECCCCCEEEecc----CCCCccC
Confidence 469999985 45556677788889999999999766554321 113579999999987544432 2233457
Q ss_pred EEEcCCCCEEE-EEECCC--CEEEEeccCCcceeeeccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 619 LRASSSGRYLL-ILFRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 619 i~~Spdg~~La-s~s~D~--tIkvWDl~kt~~~l~~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
.+|||||+.|+ +.+.++ .|.+||+ .++...+.... ..+...|+|+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~-~~g~~~~lt~~~~~~~~~~~spD----------------------------- 302 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDL-GSRQLTRLTNHFGIDTEPTWAPD----------------------------- 302 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEEC-CCCCeEECccCCCCccceEECCC-----------------------------
Confidence 89999999876 445665 4888998 56654332111 1234566654
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEe-cCCC--EEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGA--LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~-~Dgt--I~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~L 768 (1342)
+..+++.+ .+|. |+++++.+...+.+. .. + .....++| ||+.|
T Consensus 303 -----------------------G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt--~~-----g--~~~~~~~~SpDG~~I 350 (433)
T PRK04922 303 -----------------------GKSIYFTSDRGGRPQIYRVAASGGSAERLT--FQ-----G--NYNARASVSPDGKKI 350 (433)
T ss_pred -----------------------CCEEEEEECCCCCceEEEEECCCCCeEEee--cC-----C--CCccCEEECCCCCEE
Confidence 34555554 3444 566666554432210 00 1 11223455 99999
Q ss_pred EEEeCCC---cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECC---CeEEEEECCCCCcccccccCC
Q 000703 769 VMGDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD---NTFSVFDLDSQDPLANSLLQP 842 (1342)
Q Consensus 769 asGs~Dg---tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~D---gtI~IWDl~t~~~l~~~l~~g 842 (1342)
+..+.++ .|.+||+.+++.+.+. +........|+|| | +.|+..+.+ +.+.++|++.+.. ..+ ..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spd--G----~~i~~~s~~~g~~~L~~~~~~g~~~--~~l-~~ 420 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPN--G----SMVLYATREGGRGVLAAVSTDGRVR--QRL-VS 420 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCce--EEc-cc
Confidence 8876543 6999999988866554 3345667899999 5 666665542 4577888866531 222 11
Q ss_pred CCCCCcEEEEEEeC
Q 000703 843 QFPGTLVLELDWLP 856 (1342)
Q Consensus 843 h~~~~~V~~l~ws~ 856 (1342)
+ .+.+...+|+|
T Consensus 421 ~--~g~~~~p~wsp 432 (433)
T PRK04922 421 A--DGEVREPAWSP 432 (433)
T ss_pred C--CCCCCCCccCC
Confidence 2 24567788887
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=8.7e-09 Score=126.01 Aligned_cols=236 Identities=18% Similarity=0.186 Sum_probs=142.9
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEE
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~ 618 (1342)
..|.+||. .|...+.+..+...|.+.+|+|||+.+.+.... ..+..|.+||+.+|+.+.+.. ....+.+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~------~~~~~I~~~dl~~g~~~~l~~----~~g~~~~ 244 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE------SKKPVVYVHDLATGRRRVVAN----FKGSNSA 244 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEcc------CCCcEEEEEECCCCCEEEeec----CCCCccc
Confidence 45777786 455556677788899999999999766665432 113479999999998544432 2234568
Q ss_pred EEEcCCCCEEE-EEECCCCEEEEecc-CCcceeeeccC---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 619 LRASSSGRYLL-ILFRDAPVEVWAMT-KNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 619 i~~Spdg~~La-s~s~D~tIkvWDl~-kt~~~l~~l~~---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
.+|||||+.|+ +.+.++..+||.+. .++. ++.+.. ..+...|+|+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD----------------------------- 294 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD----------------------------- 294 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC-----------------------------
Confidence 89999999887 46778888888752 2222 232221 1233456544
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEec-CCCEEEEEe--cCCeeeccCCCCCCCccccccceEEEEeecCCEEEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVM 770 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~-DgtI~lwdv--~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~Las 770 (1342)
++.+++.+. +|...+|.+ .+...+... +. +....-..++.||++|+.
T Consensus 295 -----------------------G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~-----g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 295 -----------------------GRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FT-----GSYNTSPRISPDGKLLAY 344 (427)
T ss_pred -----------------------CCEEEEEecCCCCcEEEEEECCCCceEEEe--cC-----CCCcCceEECCCCCEEEE
Confidence 455665543 456666655 443332110 11 111111234459999998
Q ss_pred EeCCC---cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCC-e--EEEEECCCCCcccccccCCCC
Q 000703 771 GDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN-T--FSVFDLDSQDPLANSLLQPQF 844 (1342)
Q Consensus 771 Gs~Dg---tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dg-t--I~IWDl~t~~~l~~~l~~gh~ 844 (1342)
.+.++ .|.+||+.+++.+.+..+ .......|+|+ | +.|+.++.++ . +.+-|++... ...+ ..+
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spd--g----~~l~~~~~~~g~~~l~~~~~~g~~--~~~l-~~~- 413 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPN--G----RYILYATQQGGRSVLAAVSSDGRI--KQRL-SVQ- 413 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCC--C----CEEEEEEecCCCEEEEEEECCCCc--eEEe-ecC-
Confidence 77665 699999999886665432 34578899999 5 6677665443 2 4444664332 1122 222
Q ss_pred CCCcEEEEEEeCC
Q 000703 845 PGTLVLELDWLPT 857 (1342)
Q Consensus 845 ~~~~V~~l~ws~d 857 (1342)
.+.+...+|+|.
T Consensus 414 -~g~~~~p~wsp~ 425 (427)
T PRK02889 414 -GGDVREPSWGPF 425 (427)
T ss_pred -CCCCCCCccCCC
Confidence 245777889874
No 220
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=2.1e-08 Score=112.57 Aligned_cols=162 Identities=16% Similarity=0.259 Sum_probs=125.3
Q ss_pred cccccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEE-EEEEecCCCcccc
Q 000703 14 CNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVT-AVKWIPITLRCDL 92 (1342)
Q Consensus 14 ~~~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt-~v~~sp~~~~~~~ 92 (1342)
|...+|- .+-+|-.+.+-|++.=-+ +|.|+|.++++++++++.-++ ... .+++||..
T Consensus 82 Ce~~fpt-----~IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~-----------n~~gl~AlS~n~----- 139 (391)
T KOG2110|consen 82 CEIFFPT-----SILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPP-----------NPKGLCALSPNN----- 139 (391)
T ss_pred EEEecCC-----ceEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCC-----------CccceEeeccCC-----
Confidence 5556665 367899998877765444 499999999999999876432 222 45566542
Q ss_pred CCCCCCCCCcEEEEEe--CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCe-EEEEECCCC
Q 000703 93 LSTEPGSSHLLLAAAD--RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSV-LSLYNTTSA 169 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~--~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~-i~lWd~~tg 169 (1342)
.+.+||==+ ..|.|.|||+.+-+.+..+ ..|.+ +|.+|+|+++| .+||+++..|+ |+++.+.+|
T Consensus 140 -------~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I--~aH~~-~lAalafs~~G---~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 140 -------ANCYLAYPGSTTSGDVVLFDTINLQPVNTI--NAHKG-PLAALAFSPDG---TLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred -------CCceEEecCCCCCceEEEEEcccceeeeEE--EecCC-ceeEEEECCCC---CEEEEeccCceEEEEEEcCCc
Confidence 234454222 3689999999998888886 57878 99999999998 99999999886 569999999
Q ss_pred eEEEEEeCCC--CceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 170 SCMWKYDASP--EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 170 ~~i~~~~~~~--~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
+++..+..+. -.|.+++|+| |+..|++.|..++|.++.+..
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecc
Confidence 9998876543 3677999999 999999999999999987643
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.3e-08 Score=107.96 Aligned_cols=241 Identities=12% Similarity=0.056 Sum_probs=160.1
Q ss_pred CCCceEeCCCC-eEEEEc-CCeEEEEeCCC---------cc-eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccC
Q 000703 26 NFGSADLSPSG-LLAFAS-GSSISILDSRS---------LQ-LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs-~~~V~v~d~~s---------~~-~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1342)
+|-+-+|||.+ .++.|+ .+.|.|....+ +| .+-+..+|.+ +|..++|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-----------piy~~~f~d-------- 72 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-----------PIYYLAFHD-------- 72 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-----------Ceeeeeeeh--------
Confidence 35566899988 566664 57888877643 23 3445678998 899999984
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCCeE------EEEecCCCCC----CCCeeEEEEeecCCCCcEEEEEeCCCeEEE
Q 000703 94 STEPGSSHLLLAAADRHGRVALLDFRLRSV------VLWIDPDPNP----KLGIQDLCWIVSKPDSFVLAAINGPSVLSL 163 (1342)
Q Consensus 94 s~~~~p~g~~LASg~~dG~V~vWD~~~g~~------~~~l~~~~h~----~~~V~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1342)
.+|.||+. |.|+=|..+.-.. +-++..+-|. -+.|++|-..|..+ .++. +++|+.+.-
T Consensus 73 --------~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~-AgGD~~~y~ 140 (325)
T KOG0649|consen 73 --------DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILF-AGGDGVIYQ 140 (325)
T ss_pred --------hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEE-ecCCeEEEE
Confidence 35888875 9999887754321 0011112222 11578887777652 3444 448999999
Q ss_pred EECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000703 164 YNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1342)
Q Consensus 164 Wd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1342)
||+++|+....+.+|++.+.|+.-.- ....+.+++.||++++||........ -+..+ +. -..++.+|
T Consensus 141 ~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~----~ie~y-k~--~~~lRp~~----- 207 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVS----MIEPY-KN--PNLLRPDW----- 207 (325)
T ss_pred EEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeE----Eeccc-cC--hhhcCccc-----
Confidence 99999999999999999999998855 55688899999999999986632211 11000 00 01111111
Q ss_pred CCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEE
Q 000703 244 SLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSI 323 (1342)
Q Consensus 244 ~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~l 323 (1342)
..++-.++-+.| ++ .++....+.+|.+...+...+++++ +++..+.| +.+.++.+++...|.-
T Consensus 208 ---------g~wigala~~ed--Wl-vCGgGp~lslwhLrsse~t~vfpip---a~v~~v~F--~~d~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 208 ---------GKWIGALAVNED--WL-VCGGGPKLSLWHLRSSESTCVFPIP---ARVHLVDF--VDDCVLIGGEGNHVQS 270 (325)
T ss_pred ---------CceeEEEeccCc--eE-EecCCCceeEEeccCCCceEEEecc---cceeEeee--ecceEEEeccccceee
Confidence 114554555555 44 4555567889999999999889886 34445554 4678888888888888
Q ss_pred EEcc
Q 000703 324 WRRK 327 (1342)
Q Consensus 324 W~~~ 327 (1342)
|...
T Consensus 271 ~~l~ 274 (325)
T KOG0649|consen 271 YTLN 274 (325)
T ss_pred eeec
Confidence 8764
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.5e-08 Score=124.37 Aligned_cols=204 Identities=14% Similarity=0.066 Sum_probs=133.4
Q ss_pred eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeC---CCcEEEEeCCCC
Q 000703 45 SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR---HGRVALLDFRLR 121 (1342)
Q Consensus 45 ~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~---dG~V~vWD~~~g 121 (1342)
.|.++|.. +...+.+..|.. .|...+||||| ++||..+. +..|.+||+.+|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~-----------~v~~p~wSpDG--------------~~lay~s~~~g~~~i~~~dl~~g 236 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSS-----------LVLTPRFSPNR--------------QEITYMSYANGRPRVYLLDLETG 236 (435)
T ss_pred EEEEECCC-CCCcEEEecCCC-----------CeEeeEECCCC--------------CEEEEEEecCCCCEEEEEECCCC
Confidence 78899975 444455667776 89999999874 66776653 468999999988
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCC--eEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEe
Q 000703 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPS--VLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1342)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~--~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s 199 (1342)
+.... ..+.+ .+...+|+|++. .++.+.+.++ .|.+||+.+|.. ..+..+.......+|+| |++++++.+
T Consensus 237 ~~~~l---~~~~g-~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s 308 (435)
T PRK05137 237 QRELV---GNFPG-MTFAPRFSPDGR--KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFES 308 (435)
T ss_pred cEEEe---ecCCC-cccCcEECCCCC--EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEE
Confidence 76433 22334 677889999872 4555665554 477779987765 34554445566789999 999998876
Q ss_pred C-CC--eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC--
Q 000703 200 L-KG--LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP-- 274 (1342)
Q Consensus 200 ~-dG--~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d-- 274 (1342)
. +| .|+++|..+.. .+.+ .. .........|||||+.+++...+
T Consensus 309 ~~~g~~~Iy~~d~~g~~-----~~~l------------t~---------------~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN-----PRRI------------SF---------------GGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred CCCCCCeEEEEECCCCC-----eEEe------------ec---------------CCCcccCeEECCCCCEEEEEEcCCC
Confidence 4 33 56666653321 1111 00 01123345899999999998754
Q ss_pred -CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCC
Q 000703 275 -RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLD 318 (1342)
Q Consensus 275 -~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~D 318 (1342)
..|.+||+..+.. ..+. . + .......++|||+.|+..+.+
T Consensus 357 ~~~i~~~d~~~~~~-~~lt-~-~-~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 357 QFSIGVMKPDGSGE-RILT-S-G-FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ceEEEEEECCCCce-Eecc-C-C-CCCCCCeECCCCCEEEEEEcc
Confidence 3689999876643 2222 1 1 234456789999988776553
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.08 E-value=7.5e-09 Score=120.25 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=119.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCC-CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD 176 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~ 176 (1342)
.|.|.-|..|=.-|.|.+-|....+....|.... -.+..|+++.|.|.++ .+++++..++.+.++|.. +.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~-------~~ 252 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD--SLFLVAHASGNLYLYDKE-------IV 252 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC--ceEEEEEecCceEEeecc-------cc
Confidence 4677788899999999988876532222111111 1123899999999764 456667788999999862 11
Q ss_pred CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
...... +...-+ ++..++..-..+.. .+....+|.+. ...+
T Consensus 253 ~~~t~p-~~~~~k-~~~~f~i~t~ksk~----------~rNPv~~w~~~---------------------------~g~i 293 (636)
T KOG2394|consen 253 CGATAP-SYQALK-DGDQFAILTSKSKK----------TRNPVARWHIG---------------------------EGSI 293 (636)
T ss_pred ccCCCC-cccccC-CCCeeEEeeeeccc----------cCCccceeEec---------------------------cccc
Confidence 111111 111112 44444433211110 01112333321 1136
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 257 ~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
..++|||||++|++++.|+.++|||-.+.+++..+. .-.+.++-|.++|||++|++|++|.-|.+|...++.
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 778999999999999999999999999988775542 234678889999999999999999999999987654
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.07 E-value=6.2e-10 Score=127.17 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=179.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEE
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1342)
+|..++.|+.-|.|-.+|..++++..++..- ..|+++.|..+..+++++.- +.+.|+|- .|. .+..
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQK----------~y~yvYD~-~Gt--ElHC 205 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQK----------KYVYVYDN-NGT--ELHC 205 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhhh----------ceEEEecC-CCc--EEee
Confidence 5899999999999999999999999888753 67999999998888876653 47888884 343 4554
Q ss_pred eccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 608 l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
++. ..+|..+.|-|-.-+|++++..|-++.-|+ .+|+++..+. +.+..+.-.
T Consensus 206 lk~--~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DV-S~GklVa~~~t~~G~~~vm~qN---------------------- 260 (545)
T KOG1272|consen 206 LKR--HIRVARLEFLPYHFLLVAASEAGFLKYQDV-STGKLVASIRTGAGRTDVMKQN---------------------- 260 (545)
T ss_pred hhh--cCchhhhcccchhheeeecccCCceEEEee-chhhhhHHHHccCCccchhhcC----------------------
Confidence 443 357889999998888889999999999999 6888775543 122222222
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee-
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~- 763 (1342)
|..-.+-.|-.+|+|.+|.......- ..+..|.+.|.+|++
T Consensus 261 ------------------------------P~NaVih~GhsnGtVSlWSP~skePL--------vKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 261 ------------------------------PYNAVIHLGHSNGTVSLWSPNSKEPL--------VKILCHRGPVSSIAVD 302 (545)
T ss_pred ------------------------------CccceEEEcCCCceEEecCCCCcchH--------HHHHhcCCCcceEEEC
Confidence 22233456778999999998644310 012357788999999
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEE-ECCCCCccccccc
Q 000703 764 -RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF-DLDSQDPLANSLL 840 (1342)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IW-Dl~t~~~l~~~l~ 840 (1342)
+|+++|+.+.|..++|||++.-. ++++.. .-+...++||-- +.|| ++...-|.|| |.-.+....+..-
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqk-------glLA-~~~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQK-------GLLA-LSYGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred CCCcEEeecccccceeEeeeccccccceeec-CCCccccccccc-------ccee-eecCCeeeeehhhhcCCCCCCcch
Confidence 89999999999999999998743 555544 456777888865 3444 4455569999 4433221112222
Q ss_pred CCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCC
Q 000703 841 QPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADS 874 (1342)
Q Consensus 841 ~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~Dg 874 (1342)
..|.-++.|.++.|+|. -+ +|..|-.-|
T Consensus 374 m~H~~~~~V~~l~FcP~----ED--vLGIGH~~G 401 (545)
T KOG1272|consen 374 MNHRCGGPVEDLRFCPY----ED--VLGIGHAGG 401 (545)
T ss_pred hhhccCcccccceeccH----HH--eeeccccCC
Confidence 34554578999999997 33 455554444
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.07 E-value=1.3e-08 Score=111.98 Aligned_cols=395 Identities=14% Similarity=0.178 Sum_probs=212.6
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEE-EeCCCcEEEEEccCCceeeeEee
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEGEQVHVMCT 337 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g~~~~~~~~ 337 (1342)
++|||+|+.+++++.- .+.|-|.++-+.+..+.. -..++-+-+..|.-++.| +..|+.|.+|+...-+- .|.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---YCK 86 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeeccee---EEE
Confidence 4899999999998755 788999988766543321 123444555677777777 56889999999875441 122
Q ss_pred cccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCcc-EEEEEEcCCcEEEE
Q 000703 338 MEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKT-HLISISDDGKVWNW 416 (1342)
Q Consensus 338 ~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~las~s~DG~v~lW 416 (1342)
.++. +. .+.+..-||+ |+ .|.+...|-+|.+|
T Consensus 87 Ideg--------~a-gls~~~WSPd--------------------------------------grhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 87 IDEG--------QA-GLSSISWSPD--------------------------------------GRHILLTSEFDLRITVW 119 (447)
T ss_pred eccC--------CC-cceeeeECCC--------------------------------------cceEeeeecceeEEEEE
Confidence 2330 11 2333333333 32 45566689999999
Q ss_pred EcccccccccccccccccCCcccccccccCcccccCcCcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeee
Q 000703 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1342)
Q Consensus 417 dl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1342)
.+.+.+... + .+++
T Consensus 120 SL~t~~~~~------------------------~--------------------------~~pK---------------- 133 (447)
T KOG4497|consen 120 SLNTQKGYL------------------------L--------------------------PHPK---------------- 133 (447)
T ss_pred EeccceeEE------------------------e--------------------------cccc----------------
Confidence 987653211 0 0111
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC---CCcEEEEeeecCCCeEEEEEcCCCcE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS---ANAVTASFSVHNGTVRGLRWLGNSRL 573 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~---tg~~~~~l~gH~~~V~~l~fs~d~~l 573 (1342)
..+-.++|.| +|+..|..+.-..-..+++. .-.+++++...+-..++|+|+|||..
T Consensus 134 -----~~~kg~~f~~----------------dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 134 -----TNVKGYAFHP----------------DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred -----cCceeEEECC----------------CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 1123356776 68888877654332222322 22355667666777789999999865
Q ss_pred EEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeecc
Q 000703 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~ 653 (1342)
+ .|||-.-. -+...-. -.-.+..+.+||.+++|++|+.|+.+||-+- -+-+...++.
T Consensus 193 l------------------aVwd~~Le-ykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvlnh-~tWk~f~efl 249 (447)
T KOG4497|consen 193 L------------------AVWDNVLE-YKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH-FTWKPFGEFL 249 (447)
T ss_pred E------------------EEecchhh-heeeeee---eccceeEEEeccccceEEeeccchhhhhhce-eeeeehhhhc
Confidence 4 35553110 0111110 1246788999999999999999999988664 2332222221
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCC---CCCCcCCCCCCeEEEEecCCCEE
Q 000703 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDA---SSEGSQDDTSESFAFALANGALG 730 (1342)
Q Consensus 654 ~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~---~s~~s~~~~~e~la~~~~DgtI~ 730 (1342)
..- +.. + +... ...|. + ..+.+.. -+.... ..+.+..+.+| .
T Consensus 250 hl~---s~~-d--p~~~--~~~ke----~-----------~~~~ql~-~~cLsf~p~~~~a~~~~~se-----------~ 294 (447)
T KOG4497|consen 250 HLC---SYH-D--PTLH--LLEKE----T-----------FSIVQLL-HHCLSFTPTDLEAHIWEESE-----------T 294 (447)
T ss_pred cch---hcc-C--chhh--hhhhh----h-----------cchhhhc-ccccccCCCccccCccccch-----------h
Confidence 000 000 0 0000 00000 0 0000000 000000 00000000000 0
Q ss_pred EEEecC--CeeeccC--CCCCCCccccccceEEEEee--cCCEEEEEeC--CCcEEEEECCCCceeeeccccccEEEEEE
Q 000703 731 VFEVHG--RRIRDFR--PKWPSSSFISSDGLITAMAY--RLPHVVMGDR--SGNIRWWDVTTGHSSQFSTHREGIRRIKF 802 (1342)
Q Consensus 731 lwdv~g--~~v~d~~--~~~~~~~~~~~~~~V~~va~--dg~~LasGs~--DgtI~lWDl~tg~~~~l~~H~~~V~~v~f 802 (1342)
+|++.. ..+...+ ..+|.. .-.+.-++| |..++++-.. -+.+-+||++..+++.+--.+.+|+...|
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnP-----k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~W 369 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNP-----KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEW 369 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCc-----ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEe
Confidence 111100 0111111 111211 112556777 7777777432 35788999988777666556789999999
Q ss_pred ecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCC
Q 000703 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADS 874 (1342)
Q Consensus 803 SPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~Dg 874 (1342)
.|.. .+|+++.....+..|-......+.... . |-.|.++.|+-+ |+ .++..+.|.
T Consensus 370 dP~~------prL~vctg~srLY~W~psg~~~V~vP~-~----GF~i~~l~W~~~----g~--~i~l~~kDa 424 (447)
T KOG4497|consen 370 DPGR------PRLVVCTGKSRLYFWAPSGPRVVGVPK-K----GFNIQKLQWLQP----GE--FIVLCGKDA 424 (447)
T ss_pred CCCC------ceEEEEcCCceEEEEcCCCceEEecCC-C----CceeeeEEecCC----Cc--EEEEEcCCc
Confidence 9984 468887667779999877654332222 2 356999999986 56 345566665
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1.5e-08 Score=124.03 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=134.5
Q ss_pred CeEEEEcC----CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCC-
Q 000703 36 GLLAFASG----SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRH- 110 (1342)
Q Consensus 36 gllA~gs~----~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~d- 110 (1342)
+.|||-+. ..|.++|. ++...+.+..|.. .|...+||||| +.||..+.+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~~~~-----------~v~~p~wSPDG--------------~~la~~s~~~ 217 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDA-DGQNAQSALSSPE-----------PIISPAWSPDG--------------TKLAYVSFES 217 (427)
T ss_pred cEEEEEEccCCccEEEEECC-CCCCceEeccCCC-----------CcccceEcCCC--------------CEEEEEEccC
Confidence 55776542 36778887 4554455556666 78899999874 667766532
Q ss_pred --CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEE--ECCCCeEEEEEeCCCCceEEEE
Q 000703 111 --GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY--NTTSASCMWKYDASPEYLSCIR 186 (1342)
Q Consensus 111 --G~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW--d~~tg~~i~~~~~~~~~v~~v~ 186 (1342)
..|.+||+.+|+........ + .+...+|+||+. .++.+.+.++...|| |+.++. +..+..+........
T Consensus 218 ~~~~I~~~dl~~g~~~~l~~~~---g-~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~ 290 (427)
T PRK02889 218 KKPVVYVHDLATGRRRVVANFK---G-SNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPF 290 (427)
T ss_pred CCcEEEEEECCCCCEEEeecCC---C-CccceEECCCCC--EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeE
Confidence 35999999998765432222 3 456789999872 444566777766666 555444 444544344456778
Q ss_pred ecCCCCCEEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 187 RNPFDARHFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 187 fsP~d~~~la~~s~-dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
|+| |+++|+..+. +|...+|.+..... . .+.+ .. . ..+....+|||||
T Consensus 291 wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g-~--~~~l------------t~-------------~--g~~~~~~~~SpDG 339 (427)
T PRK02889 291 FSP-DGRSIYFTSDRGGAPQIYRMPASGG-A--AQRV------------TF-------------T--GSYNTSPRISPDG 339 (427)
T ss_pred EcC-CCCEEEEEecCCCCcEEEEEECCCC-c--eEEE------------ec-------------C--CCCcCceEECCCC
Confidence 999 9999887765 35555554321100 0 0111 00 0 0012245899999
Q ss_pred CceEEEEcCC---eEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCC
Q 000703 266 RHIIFVTFPR---ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1342)
Q Consensus 266 ~~ll~~~~d~---~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1342)
+.+++.+.++ +|.+||+.+++... +. . + .......++|||+.|+....++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~-~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTA-LT-D-T-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEE-cc-C-C-CCccCceECCCCCEEEEEEecC
Confidence 9999887654 69999999887542 22 1 1 1224567899999888776554
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.04 E-value=1e-08 Score=119.07 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred ceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee-eeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCC
Q 000703 756 GLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ 832 (1342)
Q Consensus 756 ~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~-~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~ 832 (1342)
+.|+.++| ||++||+.+.||.+||+|..+.++. .+...-+...+|.|||| | ++|++++.|--|.||.+..+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD--G----KyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD--G----KYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC--c----cEEEecCCcceEEEEEeccc
Confidence 46788888 9999999999999999999887643 34555688999999999 6 89999999999999999887
Q ss_pred CcccccccCCCCCCCcEEEEEEeCCCC-------------------------------CCC-----------CCeEEEEE
Q 000703 833 DPLANSLLQPQFPGTLVLELDWLPTRT-------------------------------DKN-----------DPLVLCIA 870 (1342)
Q Consensus 833 ~~l~~~l~~gh~~~~~V~~l~ws~d~~-------------------------------~~g-----------~~~~L~s~ 870 (1342)
+-++ .||.|..||..|+|-|..+ ..+ -.+.+.|+
T Consensus 365 RVVA----RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 365 RVVA----RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred eEEE----eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 7332 3444458999999974211 112 23578899
Q ss_pred eCCCcEEEEEccCCc
Q 000703 871 GADSSFRLIEVNTSE 885 (1342)
Q Consensus 871 s~DgtIrvWdi~~~~ 885 (1342)
|.|-.+-+||+....
T Consensus 441 GqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 441 GQDTQLCLWDLTEDV 455 (636)
T ss_pred cccceEEEEecchhh
Confidence 999999999998544
No 228
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.04 E-value=2.6e-08 Score=109.79 Aligned_cols=242 Identities=16% Similarity=0.226 Sum_probs=169.7
Q ss_pred CCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCc-eeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCE
Q 000703 559 NGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI-NRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPV 637 (1342)
Q Consensus 559 ~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~-~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tI 637 (1342)
..+|++-+|++|...++.+... +++.|+...... ....+++.. |...|++|.|+|..+.|++++.|+.-
T Consensus 10 ~~pitchAwn~drt~iAv~~~~---------~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~drna 79 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNN---------HEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDRNA 79 (361)
T ss_pred cCceeeeeecCCCceEEeccCC---------ceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCCCc
Confidence 4789999999999777766542 478888876554 456777766 88999999999999999999999999
Q ss_pred EEEeccCCcce-----eeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCc
Q 000703 638 EVWAMTKNPIM-----LRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGS 712 (1342)
Q Consensus 638 kvWDl~kt~~~-----l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s 712 (1342)
.||.....++- +..+....+.+.|+|.
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------------------------------------------------ 111 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------------------------------------------------ 111 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecCc------------------------------------------------
Confidence 99987222221 1122234578889854
Q ss_pred CCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEEC-----CC-
Q 000703 713 QDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDV-----TT- 784 (1342)
Q Consensus 713 ~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl-----~t- 784 (1342)
...||+++.-..|-+|-.++..-.=+.+.+.. -+...|++++| ++-+|++|+.|+..|++.. ..
T Consensus 112 ----enkFAVgSgar~isVcy~E~ENdWWVsKhikk----PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 112 ----ENKFAVGSGARLISVCYYEQENDWWVSKHIKK----PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred ----CceEEeccCccEEEEEEEecccceehhhhhCC----ccccceeeeeccCCcceecccccCcceeEEEEeeeccccC
Confidence 24588888888888888755321000000000 13356999999 7789999999999999853 21
Q ss_pred ------------Cc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEE
Q 000703 785 ------------GH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLE 851 (1342)
Q Consensus 785 ------------g~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~ 851 (1342)
|+ +..+..-.++|.++.|+|. | .+||=.++|.++.+=|...+.+...++...+ -+.++
T Consensus 184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G----~~lawv~Hds~v~~~da~~p~~~v~~~~~~~---lP~ls 254 (361)
T KOG1523|consen 184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--G----NRLAWVGHDSTVSFVDAAGPSERVQSVATAQ---LPLLS 254 (361)
T ss_pred CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--C----CEeeEecCCCceEEeecCCCchhccchhhcc---CCcee
Confidence 11 1223456799999999999 5 7899999999999999888764433443333 46788
Q ss_pred EEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 852 LDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 852 l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
+.|-.+ . .++.++.|..=.++...
T Consensus 255 ~~~ise-----~--~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 255 VSWISE-----N--SVVAAGYDCGPVLFVTD 278 (361)
T ss_pred eEeecC-----C--ceeecCCCCCceEEEec
Confidence 999875 3 35677777554455443
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=1e-08 Score=111.54 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=85.2
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEE--EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLL--AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAA 154 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~L--ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas 154 (1342)
.|..++|+|++ ..+ ++|..+++|.|||++ ++.+..+. .. +++.+.|+|+| ++|+.
T Consensus 61 ~I~~~~WsP~g--------------~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~-~~n~i~wsP~G---~~l~~ 117 (194)
T PF08662_consen 61 PIHDVAWSPNG--------------NEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQ-PRNTISWSPDG---RFLVL 117 (194)
T ss_pred ceEEEEECcCC--------------CEEEEEEccCCcccEEEcCc-ccEeEeec----CC-CceEEEECCCC---CEEEE
Confidence 69999999975 444 445577899999996 67766652 24 78999999998 77777
Q ss_pred EeC---CCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeC------CCeEEEEEecC
Q 000703 155 ING---PSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGL------KGLLLSVRVLG 211 (1342)
Q Consensus 155 ~s~---d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~------dG~v~~~d~~~ 211 (1342)
++- .|.|.+||+.+.+++.+.. +..++.++|+| |++.|+++.. |..+.+|++.|
T Consensus 118 ~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 118 AGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 753 4679999999888876654 34578999999 9999999854 67788888765
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=4.7e-09 Score=121.62 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=128.3
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000703 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1342)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~ 135 (1342)
+-+.|.||++ -|+++.|+.+ |.+||||++|-+++|||+-..+.++.+ ..||+.
T Consensus 42 lE~eL~GH~G-----------CVN~LeWn~d--------------G~lL~SGSDD~r~ivWd~~~~KllhsI-~TgHta- 94 (758)
T KOG1310|consen 42 LEAELTGHTG-----------CVNCLEWNAD--------------GELLASGSDDTRLIVWDPFEYKLLHSI-STGHTA- 94 (758)
T ss_pred hhhhhccccc-----------eecceeecCC--------------CCEEeecCCcceEEeecchhcceeeee-eccccc-
Confidence 3467999999 9999999976 578999999999999999888888876 469998
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCC----------eEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEE
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA----------SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLL 205 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg----------~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~ 205 (1342)
-|.++.|.|...+ ++++++.+|..|+|+|+..- +.+.-+..|.+.|.-++.-|..+..+-+++.||+++
T Consensus 95 NIFsvKFvP~tnn-riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 95 NIFSVKFVPYTNN-RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred ceeEEeeeccCCC-eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 8999999998765 89999999999999999731 122223445566777888886678999999999999
Q ss_pred EEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEE-EcCCeEEEEE
Q 000703 206 SVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFV-TFPRELVVFD 281 (1342)
Q Consensus 206 ~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~-~~d~~I~iwD 281 (1342)
-+|+....... .+.+....+... .| .......++.||...+.+.+ +.|--++++|
T Consensus 174 QyDiREph~c~---------p~~~~~~~l~ny--------~~----~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 174 QYDIREPHVCN---------PDEDCPSILVNY--------NP----QLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eecccCCccCC---------ccccccHHHHHh--------ch----hhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 99986521100 011111111110 00 01223455889987665554 5778899999
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=2e-06 Score=107.71 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=105.9
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEEEeCCCCce-----EEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEE
Q 000703 150 FVLAAINGPSVLSLYNTTSASCMWKYDASPEYL-----SCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQI 224 (1342)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v-----~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i 224 (1342)
..++....++.+.+||...+..+.+... .+.. .-+.+++ +.-++++++.-|.|.+|++..+.. .
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~-p-------- 168 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNK-P-------- 168 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCC-c--------
Confidence 6778888889999999976655544433 3322 1234456 778888888889999998642110 0
Q ss_pred ecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEE
Q 000703 225 QTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVL 304 (1342)
Q Consensus 225 ~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~ 304 (1342)
. + ..+|.+.+.++.||-||+.+++++.||++++|++++++.+.. ..-++.+.+++++
T Consensus 169 ------~-~---------------l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 169 ------I-R---------------LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-TGFGHSARVWACC 225 (967)
T ss_pred ------c-e---------------ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-ccccccceeEEEE
Confidence 0 1 123556788999999999999999999999999999987762 2235678889999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcc
Q 000703 305 ADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 305 ~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
+.|+ .++++++|-+.++|+..
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eccc--eeEEeccceEEEEEecc
Confidence 8887 89999999999999654
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=6.3e-08 Score=105.32 Aligned_cols=112 Identities=17% Similarity=0.370 Sum_probs=76.0
Q ss_pred CcEEEEeCC-CCcEEEEeee-cCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCe
Q 000703 539 GAVDVVDVS-ANAVTASFSV-HNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPI 616 (1342)
Q Consensus 539 GtI~lWDl~-tg~~~~~l~g-H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I 616 (1342)
|...||.+. .+.....+.. ..++|.+++|+|++.-+++.. |...+.+.+||++ ++ .+..+ +..++
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-------g~~~~~v~lyd~~-~~--~i~~~---~~~~~ 103 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-------GSMPAKVTLYDVK-GK--KIFSF---GTQPR 103 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-------ccCCcccEEEcCc-cc--EeEee---cCCCc
Confidence 445566652 2233334433 345799999999885332222 2223489999996 33 45444 34678
Q ss_pred EEEEEcCCCCEEEEEECC---CCEEEEeccCCcceeeeccC-ceEEEEEcCC
Q 000703 617 RALRASSSGRYLLILFRD---APVEVWAMTKNPIMLRSLAL-PFTVLEWTLP 664 (1342)
Q Consensus 617 ~~i~~Spdg~~Las~s~D---~tIkvWDl~kt~~~l~~l~~-~vt~l~wsp~ 664 (1342)
..|.|||+|++||+++.+ |.|++||+ ++.+.+.+... ..+.++|+|+
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~-~~~~~i~~~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDV-RKKKKISTFEHSDATDVEWSPD 154 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEEC-CCCEEeeccccCcEEEEEEcCC
Confidence 899999999999998765 45999999 68888877653 3577999987
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=5.8e-08 Score=121.09 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=143.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCce-----EEEEEcCCCCCCCCCCCCCCccccccCCCCCc
Q 000703 614 APIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-----TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKAD 688 (1342)
Q Consensus 614 ~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~v-----t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i 688 (1342)
..|....+..+...++.+..++.+-+||. +.+.++.....+- .++-|-.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~~~~~~g~------------------------- 141 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLYSSLIIGD------------------------- 141 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEec-ccCceehhcCCCceEEEEeEEEEec-------------------------
Confidence 34555566667788889999999999998 6776666544221 1111110
Q ss_pred cCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCC
Q 000703 689 TTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLP 766 (1342)
Q Consensus 689 ~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~ 766 (1342)
.+..-.+++++.-|.|.+|....... +. -+.||.|.|.++.+ ||+
T Consensus 142 -------------------------s~~~~~i~~gsv~~~iivW~~~~dn~----p~----~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 142 -------------------------SAEELYIASGSVFGEIIVWKPHEDNK----PI----RLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred -------------------------cCcEEEEEeccccccEEEEeccccCC----cc----eecccCCceEEEEEccCCc
Confidence 01122467888889999999863322 11 13589999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCc-ee-eeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCC
Q 000703 767 HVVMGDRSGNIRWWDVTTGH-SS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQF 844 (1342)
Q Consensus 767 ~LasGs~DgtI~lWDl~tg~-~~-~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~ 844 (1342)
++++.|.|.+||+|++.+++ .. +.-+|+.+|..+.|.|. ++++++.|-|.++|+....+ +. .. .+|.
T Consensus 189 ~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~~~~-l~-~y-~~h~ 257 (967)
T KOG0974|consen 189 YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVNGTQ-LE-VY-DEHS 257 (967)
T ss_pred EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecccce-eh-hh-hhhh
Confidence 99999999999999999987 33 56789999999999997 69999999999999765543 32 22 4565
Q ss_pred CCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 845 PGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 845 ~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
+..+..++..+. .. .+++++.||++|+|+....
T Consensus 258 -g~~iw~~~~~~~-----~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 258 -GKGIWKIAVPIG-----VI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -hcceeEEEEcCC-----ce-EEEeeccCcchhhhhhhcc
Confidence 356888988875 44 5789999999999997643
No 234
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.91 E-value=2.3e-07 Score=104.40 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=112.9
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCCCCeeEEEEeecCCCCcEEEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPD-PNPKLGIQDLCWIVSKPDSFVLAAI 155 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~-~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1342)
.|-+|++.. +||+.+=.+. |.|+|+++-+.+++++.. .+.+ ++.++++++.+ .+||-=
T Consensus 89 ~IL~VrmNr----------------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~-gl~AlS~n~~n---~ylAyp 147 (391)
T KOG2110|consen 89 SILAVRMNR----------------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPK-GLCALSPNNAN---CYLAYP 147 (391)
T ss_pred ceEEEEEcc----------------ceEEEEEccc-EEEEecccceeehhhhccCCCcc-ceEeeccCCCC---ceEEec
Confidence 688888875 4677776554 999999999999987653 4544 56655554433 566642
Q ss_pred e--CCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhh
Q 000703 156 N--GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLK 233 (1342)
Q Consensus 156 s--~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~ 233 (1342)
+ ..|.|.|||+.+-+++..+..|.+++.|++|+| ||..||+++.+|+|.
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVI---------------------------- 198 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVI---------------------------- 198 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEE----------------------------
Confidence 2 348999999988888877888878888888888 788888887777652
Q ss_pred hhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEE
Q 000703 234 LERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLY 313 (1342)
Q Consensus 234 l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~ 313 (1342)
+||++.+|+.+..++-..-+..+.+++|+||+++|.
T Consensus 199 --------------------------------------------RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 199 --------------------------------------------RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred --------------------------------------------EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 233444455554443111135577899999999999
Q ss_pred EEeCCCcEEEEEccC
Q 000703 314 CAHLDGKLSIWRRKE 328 (1342)
Q Consensus 314 s~~~DgtI~lW~~~~ 328 (1342)
+.+..+||-|+...+
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998764
No 235
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.91 E-value=5.2e-08 Score=112.94 Aligned_cols=234 Identities=16% Similarity=0.138 Sum_probs=149.6
Q ss_pred CCCceEeCCCCeEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 26 NFGSADLSPSGLLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 26 ~~~a~~~s~~gllA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
-|-|++|+.+--+.|.+ +..+.+|...+....+++..+.. +|...-+ +.+. |...-.....+
T Consensus 16 ~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-----------f~pt~~h-~~~r-----s~~~g~~~d~~ 78 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-----------FVPTDMH-LGGR-----SSGGGKGSDTL 78 (737)
T ss_pred eEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-----------cCCcccc-cccc-----ccCCCCCcceE
Confidence 35689999877555555 45666776555555555666655 4433222 2111 00111233567
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSC 184 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~ 184 (1342)
+.++.||++.|-+ +.|++.+. ...|.+ .|.+-.|+|+| .-|++++.||.|++|.- +|-...++....++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~s--v~AH~~-A~~~gRW~~dG---tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERS--ISAHAA-AISSGRWSPDG---AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEcCCceEEEec-ccchhhhh--hhhhhh-hhhhcccCCCC---ceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 8888999999988 45666655 467877 89998999998 67899999999999985 57544444434679999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC
Q 000703 185 IRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH 264 (1342)
Q Consensus 185 v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpd 264 (1342)
++|.| ++..++.+-. +.+.+=-+.+. .+- .+ |- +|-+-++++.++|.
T Consensus 151 ~~W~p-~S~~vl~c~g-~h~~IKpL~~n------~k~----------i~----Wk-----------AHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 151 ARWAP-NSNSIVFCQG-GHISIKPLAAN------SKI----------IR----WR-----------AHDGLVLSLSWSTQ 197 (737)
T ss_pred EEECC-CCCceEEecC-CeEEEeecccc------cce----------eE----Ee-----------ccCcEEEEeecCcc
Confidence 99999 7666655533 23332111110 000 01 11 13346889999999
Q ss_pred CCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEE
Q 000703 265 WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322 (1342)
Q Consensus 265 g~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~ 322 (1342)
..-+++++.|-..+|||.. |+.+..-.. +..++.++++.|| . +|..+.-.+.|
T Consensus 198 s~lI~sgGED~kfKvWD~~-G~~Lf~S~~--~ey~ITSva~npd-~-~~~v~S~nt~R 250 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQ-GANLFTSAA--EEYAITSVAFNPE-K-DYLLWSYNTAR 250 (737)
T ss_pred ccceeecCCceeEEeeccc-CcccccCCh--hccceeeeeeccc-c-ceeeeeeeeee
Confidence 9999999999999999976 555533322 3468899999999 3 33333334444
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=7.8e-07 Score=99.58 Aligned_cols=227 Identities=16% Similarity=0.122 Sum_probs=140.3
Q ss_pred ccccccCCCCCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCC-c---ce--------eEe--ecCCCCCCCCCCCCCCC
Q 000703 13 DCNFMLPGPPSRNNFGSADLSPSG--LLAFASGSSISILDSRS-L---QL--------IST--IPIPPPTSAGSVASLSP 76 (1342)
Q Consensus 13 ~~~~~lpg~~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~s-~---~~--------~~~--l~~H~~~~~~~~~~~~~ 76 (1342)
+|.-.|..... .|+.|++|-|-+ -||.||...|.||.... + .. .++ -+||.
T Consensus 130 t~pt~Lks~sQ-rnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------------ 196 (445)
T KOG2139|consen 130 TCPTKLKSVSQ-RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------------ 196 (445)
T ss_pred CCCceecchhh-cceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCc------------
Confidence 55556666544 479999999976 79999999999997542 1 11 112 23443
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~-dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1342)
.||+++|.+| |.+|++++- |..|+|||+.+|..+.-.. -..+ ++.-|.||||+ ++|.++
T Consensus 197 pVtsmqwn~d--------------gt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glg-g~slLkwSPdg---d~lfaA 256 (445)
T KOG2139|consen 197 PVTSMQWNED--------------GTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLG-GFSLLKWSPDG---DVLFAA 256 (445)
T ss_pred eeeEEEEcCC--------------CCEEeecccCcceEEEEcCCCCCcccccc--cCCC-ceeeEEEcCCC---CEEEEe
Confidence 7999999987 577888874 5789999999987654321 1224 78899999998 677778
Q ss_pred eCCCeEEEEEC-CCCeEEEEEeCCCCceEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccce---eeeeEEEecCcch
Q 000703 156 NGPSVLSLYNT-TSASCMWKYDASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEV---VVKELQIQTDCTE 230 (1342)
Q Consensus 156 s~d~~i~lWd~-~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~---~~k~~~i~~~~~~ 230 (1342)
.-|...++|+- ++-++..-..+ ++.+..-.|+| +++.|... +..-.++...+.++.+... ..|.+.+- .+
T Consensus 257 t~davfrlw~e~q~wt~erw~lg-sgrvqtacWsp-cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli---aD 331 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILG-SGRVQTACWSP-CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI---AD 331 (445)
T ss_pred cccceeeeehhcccceecceecc-CCceeeeeecC-CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee---cc
Confidence 88999999953 33332211223 56888999999 77766554 4445555555544322110 11222210 12
Q ss_pred hhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCC--------eEEEEEccCCc
Q 000703 231 LLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPR--------ELVVFDLQYET 286 (1342)
Q Consensus 231 l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~--------~I~iwDl~t~~ 286 (1342)
|+.+... ++ +.---+..-++++-|.|..+++.--.+ .|.+||....-
T Consensus 332 L~e~ti~--------ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 332 LQEVTIC--------AG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred chhhhhh--------cC-cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 2222110 00 000001234569999999998875332 47788876543
No 237
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=3.3e-06 Score=99.08 Aligned_cols=255 Identities=14% Similarity=0.079 Sum_probs=145.8
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE-e---------CCCcE
Q 000703 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA-D---------RHGRV 113 (1342)
Q Consensus 44 ~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg-~---------~dG~V 113 (1342)
+.|.|.|..+++.+.+++.-.. +.. + +|||+ ..|..+ . +++.|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----------P~~--~-~spDg--------------~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----------PNP--V-VASDG--------------SFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----------Cce--e-ECCCC--------------CEEEEEeccccccccCCCCCEE
Confidence 8899999999999888764332 132 3 77775 344444 3 57899
Q ss_pred EEEeCCCCeEEEEecCCCCC----CCCeeEEEEeecCCCCcEEEEEe--CCCeEEEEECCCCeEEEEEeCCCCceEE---
Q 000703 114 ALLDFRLRSVVLWIDPDPNP----KLGIQDLCWIVSKPDSFVLAAIN--GPSVLSLYNTTSASCMWKYDASPEYLSC--- 184 (1342)
Q Consensus 114 ~vWD~~~g~~~~~l~~~~h~----~~~V~~l~wsp~~~~~~lLas~s--~d~~i~lWd~~tg~~i~~~~~~~~~v~~--- 184 (1342)
.|||+.+++.+.++++.+.. ...-..++++|++ ++|.+.. .++.|.+.|+.+++.+.++.-+ +...-
T Consensus 80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg---k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t 155 (352)
T TIGR02658 80 EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN---KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPT 155 (352)
T ss_pred EEEECccCcEEeEEccCCCchhhccCccceEEECCCC---CEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEe
Confidence 99999999999988663220 1123467899987 6666554 4799999999999877655431 11110
Q ss_pred -----EEecCCCCCEEEE-EeCCCeEEE-----EEe--cC--Ccc--cceeeeeEEEecCcchhhhh---------hhhh
Q 000703 185 -----IRRNPFDARHFCV-LGLKGLLLS-----VRV--LG--QKE--DEVVVKELQIQTDCTELLKL---------EREL 238 (1342)
Q Consensus 185 -----v~fsP~d~~~la~-~s~dG~v~~-----~d~--~~--~~~--~~~~~k~~~i~~~~~~l~~l---------~~~~ 238 (1342)
+...+ |++.+-. ...+|.... +|. .+ ..+ .....+.++++.. +.+..+ ...|
T Consensus 156 ~e~~~~~~~~-Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 156 ANDTFFMHCR-DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred cCCccEEEee-cCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 11111 2222221 111221111 000 00 000 0000122222110 000000 0001
Q ss_pred ccccCCCCCCCCcCccceEEEEEccCCCceEEEEc----------CCeEEEEEccCCceeEEEecCCCccceEEEEEcCC
Q 000703 239 SAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF----------PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1342)
Q Consensus 239 ~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~----------d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1342)
...+. ..++..-.|...-.++|+||++++...+. .++|.++|+++++.+..+... .....+.++||
T Consensus 234 ~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~D 309 (352)
T TIGR02658 234 EAFTE-AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQD 309 (352)
T ss_pred eeccc-cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCC
Confidence 00000 00000112223333799999998877542 268999999999999988754 35678899999
Q ss_pred CC-EEEEEe-CCCcEEEEEccCCceeeeE
Q 000703 309 ND-LLYCAH-LDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 309 g~-~L~s~~-~DgtI~lW~~~~g~~~~~~ 335 (1342)
++ .||+.. .++.|.+.|..+++.+..+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99 999777 6889999999988766554
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.85 E-value=3.4e-07 Score=111.66 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=130.3
Q ss_pred eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCC---CcEEEEeCCCC
Q 000703 45 SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRH---GRVALLDFRLR 121 (1342)
Q Consensus 45 ~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~d---G~V~vWD~~~g 121 (1342)
.|.++|..... .+.|..|.. .+...+|||| |++||.+..+ .+|.+||+.+|
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~-----------~~~~p~~Spd--------------g~~la~~~~~~~~~~i~v~d~~~g 224 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSRE-----------PILSPAWSPD--------------GQKLAYVSFESGKPEIYVQDLATG 224 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCC-----------ceecccCCCC--------------CCEEEEEEcCCCCcEEEEEECCCC
Confidence 68888875443 344555655 6888889987 4677766543 47999999988
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCC--CeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEe
Q 000703 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP--SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1342)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d--~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s 199 (1342)
+..... .+.+ .+..++|+|++. .++.+.+.+ ..|.+||+.++... .+..+.......+|+| |+++|++.+
T Consensus 225 ~~~~~~---~~~~-~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s 296 (417)
T TIGR02800 225 QREKVA---SFPG-MNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSP-DGKSIAFTS 296 (417)
T ss_pred CEEEee---cCCC-CccceEECCCCC--EEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECC-CCCEEEEEE
Confidence 655432 2223 566789999872 454555444 46888999877542 3333333445678999 999988776
Q ss_pred CC-C--eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCC-
Q 000703 200 LK-G--LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPR- 275 (1342)
Q Consensus 200 ~d-G--~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~- 275 (1342)
.. | .|+.+|+.+.. .+. +.. ...+....+|||||+.+++...+.
T Consensus 297 ~~~g~~~iy~~d~~~~~-----~~~------------l~~---------------~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGE-----VRR------------LTF---------------RGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCCCCceEEEEECCCCC-----EEE------------eec---------------CCCCccCeEECCCCCEEEEEEccCC
Confidence 53 3 56666543311 011 100 011234558999999999998775
Q ss_pred --eEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcE
Q 000703 276 --ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKL 321 (1342)
Q Consensus 276 --~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI 321 (1342)
.|.+||+.++... .+... .......++|||+.|+....++..
T Consensus 345 ~~~i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 345 GFNIAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred ceEEEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCc
Confidence 8999999986543 22211 112334678999988887766543
No 239
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=0.00033 Score=81.21 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=80.3
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCc
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~ 581 (1342)
+.|.+++++| +|+.++++.....|.+.|+++|.....=.-..+-|..+.|++++++++.++.
T Consensus 402 g~I~av~vs~----------------dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP-- 463 (668)
T COG4946 402 GNIEAVKVSP----------------DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP-- 463 (668)
T ss_pred cceEEEEEcC----------------CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC--
Confidence 4677888888 6899999999999999999999875443444578999999999999999885
Q ss_pred ccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEE
Q 000703 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILF 632 (1342)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s 632 (1342)
.|-+...|+|+|+.+|+.-.+.+-.+ + =.+=+|.|||+||--.+
T Consensus 464 ---~gy~tq~Iklydm~~~Kiy~vTT~ta-~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 464 ---EGYYTQSIKLYDMDGGKIYDVTTPTA-Y---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---cceeeeeEEEEecCCCeEEEecCCcc-c---ccCcccCCCCcEEEEEe
Confidence 46677789999999988433322111 1 12347889999886443
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.83 E-value=5.9e-09 Score=119.30 Aligned_cols=234 Identities=17% Similarity=0.168 Sum_probs=173.3
Q ss_pred ceEeCCC-CeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 29 SADLSPS-GLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 29 a~~~s~~-gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
.+.|=.+ .++|.+-.+.|.|+|- .|..++.|+.|. .|..+.|-|- ..+||++
T Consensus 175 Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~------------~v~rLeFLPy--------------HfLL~~~ 227 (545)
T KOG1272|consen 175 DVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHI------------RVARLEFLPY--------------HFLLVAA 227 (545)
T ss_pred hhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcC------------chhhhcccch--------------hheeeec
Confidence 3444333 3677777888999994 577888888887 5999999874 5679999
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEe
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRR 187 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~f 187 (1342)
+..|-++--|+.+|+.+..+.. ..+ .+..|+-.|.. -++-.|+..|+|.+|.....+++-++-.|.++|+++++
T Consensus 228 ~~~G~L~Y~DVS~GklVa~~~t--~~G-~~~vm~qNP~N---aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 228 SEAGFLKYQDVSTGKLVASIRT--GAG-RTDVMKQNPYN---AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred ccCCceEEEeechhhhhHHHHc--cCC-ccchhhcCCcc---ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence 9999999999999999888633 224 67777777765 68899999999999999999988887788999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000703 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1342)
Q Consensus 188 sP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ 267 (1342)
+| +|+.+++.|.|..+.+||+.... + ++.+. .| ++ ...++||- +.
T Consensus 302 ~~-~G~YMaTtG~Dr~~kIWDlR~~~-------q---------l~t~~----------tp----~~--a~~ls~Sq--kg 346 (545)
T KOG1272|consen 302 DR-GGRYMATTGLDRKVKIWDLRNFY-------Q---------LHTYR----------TP----HP--ASNLSLSQ--KG 346 (545)
T ss_pred CC-CCcEEeecccccceeEeeecccc-------c---------cceee----------cC----CC--cccccccc--cc
Confidence 99 99999999999999999986521 0 01110 00 11 12236664 56
Q ss_pred eEEEEcCCeEEEEEccCC---ceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 268 IIFVTFPRELVVFDLQYE---TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 268 ll~~~~d~~I~iwDl~t~---~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
+++++....|.||--..+ ..-.-..-|+-.+++.++.|||=-+.|-.||.-|--.|--.-.|+
T Consensus 347 lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 347 LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 888889899999965432 111111124444678899999999999999988866655554454
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.82 E-value=5e-07 Score=110.17 Aligned_cols=213 Identities=16% Similarity=0.182 Sum_probs=130.9
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEE
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~ 618 (1342)
..|.++|.. |...+.+..+...+....|+||++.+.+.... ....+|.+||+.+|+.+.+.. +...+.+
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~------~~~~~i~v~d~~~g~~~~~~~----~~~~~~~ 238 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFE------SGKPEIYVQDLATGQREKVAS----FPGMNGA 238 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcC------CCCcEEEEEECCCCCEEEeec----CCCCccc
Confidence 368888875 44445666677788999999999877765432 112589999999987443332 3345667
Q ss_pred EEEcCCCCEEEEE-ECCC--CEEEEeccCCcceeeeccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCc
Q 000703 619 LRASSSGRYLLIL-FRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1342)
Q Consensus 619 i~~Spdg~~Las~-s~D~--tIkvWDl~kt~~~l~~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1342)
++|+|||+.|+.. +.++ .|.+||+ .++...+.... ......|+|+
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~-~~~~~~~l~~~~~~~~~~~~s~d----------------------------- 288 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDL-DGKQLTRLTNGPGIDTEPSWSPD----------------------------- 288 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEEC-CCCCEEECCCCCCCCCCEEECCC-----------------------------
Confidence 8999999987644 4444 5888888 55543221111 1122344432
Q ss_pred ccccccCCCCCcCCCCCCcCCCCCCeEEEEec-CC--CEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEE
Q 000703 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1342)
Q Consensus 694 ~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~-Dg--tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~L 768 (1342)
++.+++.+. ++ .|+++++++...+.+. .+...+..++| ||++|
T Consensus 289 -----------------------g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---------~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 289 -----------------------GKSIAFTSDRGGSPQIYMMDADGGEVRRLT---------FRGGYNASPSWSPDGDLI 336 (417)
T ss_pred -----------------------CCEEEEEECCCCCceEEEEECCCCCEEEee---------cCCCCccCeEECCCCCEE
Confidence 455555543 33 5777777655443211 01122444555 89999
Q ss_pred EEEeCCC---cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCC---eEEEEECCC
Q 000703 769 VMGDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN---TFSVFDLDS 831 (1342)
Q Consensus 769 asGs~Dg---tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dg---tI~IWDl~t 831 (1342)
+.++.++ .|.+||+.++....+..+ .......|+|+ | ++|+..+.++ .+.+.+...
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spd--g----~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPN--G----RMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCC--C----CEEEEEEeCCCcEEEEEEECCC
Confidence 9988876 899999988765555432 23456789999 5 6777665543 355555544
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.7e-07 Score=105.99 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=103.3
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-EEEEeeecCCCeEEEEEcCCCcEEEEecC
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-VTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-~~~~l~gH~~~V~~l~fs~d~~llS~s~d 579 (1342)
+-+++.+.|-|+ .....+|+++.-+.||+||...++ .+.+|..-..+|.++...|++.+|-+
T Consensus 202 PvW~tdi~Fl~g--------------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--- 264 (412)
T KOG3881|consen 202 PVWITDIRFLEG--------------SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--- 264 (412)
T ss_pred eeeeccceecCC--------------CCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE---
Confidence 346677888763 124689999999999999998775 56778777889999999999987753
Q ss_pred CcccccCcccCEEEEEEcCCCceeeeEE-eccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeec--cCce
Q 000703 580 QVNEKSGGYINRLVVTCLRSGINRAFRV-LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL--ALPF 656 (1342)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~-l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l--~~~v 656 (1342)
|.+.+.+..+|+++|+ .+.. ++| -.+.|++|..+|.+++||+++-|+-|||+|+ ++..+++.. +...
T Consensus 265 ------gn~~g~l~~FD~r~~k--l~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~-ktrkll~kvYvKs~l 334 (412)
T KOG3881|consen 265 ------GNTKGQLAKFDLRGGK--LLGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDI-KTRKLLHKVYVKSRL 334 (412)
T ss_pred ------ecccchhheecccCce--eeccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeec-ccchhhhhhhhhccc
Confidence 3345678999999987 3333 444 6789999999999999999999999999999 786666532 2234
Q ss_pred EEEEEc
Q 000703 657 TVLEWT 662 (1342)
Q Consensus 657 t~l~ws 662 (1342)
+.+-+.
T Consensus 335 t~il~~ 340 (412)
T KOG3881|consen 335 TFILLR 340 (412)
T ss_pred cEEEec
Confidence 555554
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=3.6e-07 Score=101.59 Aligned_cols=269 Identities=13% Similarity=0.160 Sum_probs=168.3
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCC-cc----eeEeecCCCCCCCCCCCCC-----CCcEEEEEEecCCCccc
Q 000703 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRS-LQ----LISTIPIPPPTSAGSVASL-----SPFVTAVKWIPITLRCD 91 (1342)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s-~~----~~~~l~~H~~~~~~~~~~~-----~~~Vt~v~~sp~~~~~~ 91 (1342)
.+++.+|.|.-.| +||+|. |+.|+++.-.. .+ ...++..|.+ --+|+ ...|+.++|.+++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep----EFDYLkSleieEKinkIrw~~~~n--- 97 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP----EFDYLKSLEIEEKINKIRWLDDGN--- 97 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc----ccchhhhhhhhhhhhhceecCCCC---
Confidence 3568899999999 999997 47888875432 22 4556767765 22344 56799999999863
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE-----------------------------------EEEecCCCCCCCC
Q 000703 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSV-----------------------------------VLWIDPDPNPKLG 136 (1342)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~-----------------------------------~~~l~~~~h~~~~ 136 (1342)
+..+.....|.+|++|.+..... .+.+ -..|+- .
T Consensus 98 ---------~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~-aNaHty-h 166 (433)
T KOG1354|consen 98 ---------LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY-ANAHTY-H 166 (433)
T ss_pred ---------ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec-ccccee-E
Confidence 33344445799999999864321 1111 123544 7
Q ss_pred eeEEEEeecCCCCcEEEEEeCCCeEEEEECCC-CeEEEEEeC---C----CCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 137 IQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS-ASCMWKYDA---S----PEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 137 V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t-g~~i~~~~~---~----~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
|+++.+..|. ..++++. |=.|-||++.- .++..-.+- . ++.|++--|+|.....++-.+.+|.|++.|
T Consensus 167 iNSIS~NsD~---Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 167 INSISVNSDK---ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeeeeecCcc---ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 8888888776 6666665 77899999862 222221211 1 346788899998888899999999999999
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcc-CCce
Q 000703 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ-YETP 287 (1342)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~-t~~~ 287 (1342)
++...-.+...|.+.-.-+. ..+.. ....-..|-.+.||++||.+++-.+ -+|.|||+. ..++
T Consensus 243 mR~~aLCd~hsKlfEepedp-----~~rsf----------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p 306 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDP-----SSRSF----------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP 306 (433)
T ss_pred chhhhhhcchhhhhccccCC-----cchhh----------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence 86422211101111100000 00000 0000012557899999998877643 789999994 4455
Q ss_pred eEEEecCCC-----------ccce--EEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 288 LFSAALPRG-----------CAKF--LDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 288 l~~~~l~~~-----------~~~~--~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
+.+.+.+.. ..-| ..+.++.++..++||+-+.-.++.+...|.
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 666655421 1112 134455677799999999999999965554
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.79 E-value=1.5e-06 Score=96.22 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=147.6
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
...+.|+-|. -+|.|.+.-.+|++....+......-+.+ |. .+.-+-|- ..+||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~---G~------~~veMLfR----------------~N~la 62 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDG---GF------KIVEMLFR----------------SNYLA 62 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccC---ch------hhhhHhhh----------------hceEE
Confidence 3458998765 78888888888988776544222222221 00 11111111 23333
Q ss_pred -EEeCC------CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeEEEEEeC
Q 000703 106 -AADRH------GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDA 177 (1342)
Q Consensus 106 -Sg~~d------G~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~ 177 (1342)
.|+.+ .+|.|||=...+++.++++. . +|.++++.++ +++++. ++.|.+|... .-+.++.++-
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~---~-~I~~V~l~r~----riVvvl--~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFN---S-EIKAVKLRRD----RIVVVL--ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEec---c-ceeeEEEcCC----eEEEEe--cCeEEEEEcCCChhheeeeec
Confidence 33322 57999997667788887652 4 8999999875 344444 6889999876 3344444432
Q ss_pred CCCceEEEEecCCCCC-EEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000703 178 SPEYLSCIRRNPFDAR-HFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1342)
Q Consensus 178 ~~~~v~~v~fsP~d~~-~la~~s~-dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1342)
...+=--++..|.-.. .||.-|. -|.|.+.|+....... . .. -.+|...
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~--p--~~-------------------------I~AH~s~ 183 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA--P--SI-------------------------INAHDSD 183 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC--c--eE-------------------------EEcccCc
Confidence 1111112334442222 2222222 3666665553311100 0 00 0123445
Q ss_pred eEEEEEccCCCceEEEEcCCe-EEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000703 256 MVKFTFSPHWRHIIFVTFPRE-LVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~d~~-I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1342)
+..++...+|..+++++..|+ |+|||.++|+.+..+.-.-..+.+..++|+||+.+|+++|+-|||-|...+.
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 777799999999999999987 8899999999998875222235678899999999999999999999998764
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1.2e-06 Score=107.47 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=138.2
Q ss_pred cEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEE
Q 000703 540 AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRAL 619 (1342)
Q Consensus 540 tI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i 619 (1342)
.|.++|...+ ..+.+..|...+....|+|||+.+.+.... . ....|.+||+.+|+.+.+.. ....+...
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~----~--~~~~l~~~~l~~g~~~~l~~----~~g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFE----Q--KRPRIFVQNLDTGRREQITN----FEGLNGAP 248 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcC----C--CCCEEEEEECCCCCEEEccC----CCCCcCCe
Confidence 4778887644 445666777889999999999766554322 1 13479999999997544432 22344568
Q ss_pred EEcCCCCEEEE-EECCC--CEEEEeccCCcceeeeccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcc
Q 000703 620 RASSSGRYLLI-LFRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVS 694 (1342)
Q Consensus 620 ~~Spdg~~Las-~s~D~--tIkvWDl~kt~~~l~~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~ 694 (1342)
+|||||++|+. ...++ .|.+||+ .++...+-... ..+...|+|+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~-~~~~~~~lt~~~~~~~~~~~spD------------------------------ 297 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDL-ASRQLSRVTNHPAIDTEPFWGKD------------------------------ 297 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEEC-CCCCeEEcccCCCCcCCeEECCC------------------------------
Confidence 99999998874 44555 4777788 56544321111 1233456544
Q ss_pred cccccCCCCCcCCCCCCcCCCCCCeEEEEec-CC--CEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEE
Q 000703 695 TPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771 (1342)
Q Consensus 695 ~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~-Dg--tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasG 771 (1342)
++.+++.+. +| .|+++++.+..++.+. +. +.......++.||+.|+..
T Consensus 298 ----------------------g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~-----~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 298 ----------------------GRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FV-----GNYNARPRLSADGKTLVMV 348 (430)
T ss_pred ----------------------CCEEEEEECCCCCceEEEEECCCCCEEEee--cC-----CCCccceEECCCCCEEEEE
Confidence 344554442 33 4667777554443211 00 1111122344489998877
Q ss_pred eCCC---cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECC---CeEEEEECCCCCcccccccCCCCC
Q 000703 772 DRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD---NTFSVFDLDSQDPLANSLLQPQFP 845 (1342)
Q Consensus 772 s~Dg---tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~D---gtI~IWDl~t~~~l~~~l~~gh~~ 845 (1342)
+.++ .|.+||+.+++.+.+. +........|||+ | +.|+..+.+ ..+.++|++.... ..+ ..+
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spd--g----~~i~~~~~~~g~~~l~~~~~~g~~~--~~l-~~~-- 416 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPN--G----TMLIYATRQQGRGVLMLVSINGRVR--LPL-PTA-- 416 (430)
T ss_pred EccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCce--EEC-cCC--
Confidence 6543 5889999998765553 2233346689999 5 666655433 3466778765432 122 111
Q ss_pred CCcEEEEEEeCC
Q 000703 846 GTLVLELDWLPT 857 (1342)
Q Consensus 846 ~~~V~~l~ws~d 857 (1342)
.+.+...+|+|.
T Consensus 417 ~g~~~~p~ws~~ 428 (430)
T PRK00178 417 QGEVREPSWSPY 428 (430)
T ss_pred CCCcCCCccCCC
Confidence 245677888874
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.6e-07 Score=104.59 Aligned_cols=227 Identities=15% Similarity=0.239 Sum_probs=142.9
Q ss_pred CCCcEEEEeCCCCcEEEE------eeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCc--eeeeEEe
Q 000703 537 QSGAVDVVDVSANAVTAS------FSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI--NRAFRVL 608 (1342)
Q Consensus 537 ~DGtI~lWDl~tg~~~~~------l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~--~~~l~~l 608 (1342)
.|-.+...+++...+..+ ..+-+.+|.++.... +.++++-. +|.+++|....+. ..++..+
T Consensus 77 ~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g~Litc~~----------sG~l~~~~~k~~d~hss~l~~l 145 (412)
T KOG3881|consen 77 ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-GTLITCVS----------SGNLQVRHDKSGDLHSSKLIKL 145 (412)
T ss_pred cCcccccccccCCccccccccccccccccccccchhhcC-CEEEEEec----------CCcEEEEeccCCccccccceee
Confidence 555555555554443332 234456777776544 44444321 3579999987543 2223322
Q ss_pred ccCCCCCeEEEEEcCCCCE-EEEEECC--CCEEEEeccCCcceeeeccCc------eEEEEEcCCCCCCCCCCCCCCccc
Q 000703 609 QKPERAPIRALRASSSGRY-LLILFRD--APVEVWAMTKNPIMLRSLALP------FTVLEWTLPTVPWPSQTGPSRQSS 679 (1342)
Q Consensus 609 ~g~h~~~I~~i~~Spdg~~-Las~s~D--~tIkvWDl~kt~~~l~~l~~~------vt~l~wsp~~~~~~~~~~~~k~~~ 679 (1342)
.. ..++..+.-++.-.+ +|+|+.. ..++|||+ .+.+.+-+-+.. ...=.|--+
T Consensus 146 a~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl-e~~~qiw~aKNvpnD~L~LrVPvW~td--------------- 207 (412)
T KOG3881|consen 146 AT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDL-EQSKQIWSAKNVPNDRLGLRVPVWITD--------------- 207 (412)
T ss_pred ec--CCceeeeccCCCCCceEecCchhcccceeeeec-ccceeeeeccCCCCccccceeeeeecc---------------
Confidence 22 245666666665544 5568888 88999999 455444332210 000112111
Q ss_pred cccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec-CCee-eccCCCCCCCccccccce
Q 000703 680 LSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-GRRI-RDFRPKWPSSSFISSDGL 757 (1342)
Q Consensus 680 ~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~-g~~v-~d~~~~~~~~~~~~~~~~ 757 (1342)
.. +........||++..-+.+++||.. +++. ..+ + | ....
T Consensus 208 -------------------i~----------Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f----d---~--~E~~ 249 (412)
T KOG3881|consen 208 -------------------IR----------FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF----D---F--LENP 249 (412)
T ss_pred -------------------ce----------ecCCCCCceEEEEecceeEEEecCcccCcceeEe----c---c--ccCc
Confidence 00 0000124579999999999999995 3332 111 1 1 1234
Q ss_pred EEEEee--cCCEEEEEeCCCcEEEEECCCCce--eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 758 ITAMAY--RLPHVVMGDRSGNIRWWDVTTGHS--SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 758 V~~va~--dg~~LasGs~DgtI~lWDl~tg~~--~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
+++++. +|++|++|..-|.+..+|+++++. ..+.+-+|.|++|..+|. + ..||++|-|+.+||+|+++..
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~--~----~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT--H----PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC--C----ceEEeeccceeEEEeecccch
Confidence 566555 999999999999999999999884 458899999999999998 4 679999999999999999976
Q ss_pred ccc
Q 000703 834 PLA 836 (1342)
Q Consensus 834 ~l~ 836 (1342)
.+.
T Consensus 324 ll~ 326 (412)
T KOG3881|consen 324 LLH 326 (412)
T ss_pred hhh
Confidence 443
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.2e-06 Score=103.10 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=173.7
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCC--CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCc
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~--~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~ 213 (1342)
.-+.|..+|||. .+||+|...-.|++||+..= -.++..| .+.|.-.-.+- |-..+|....|..|-+-.-.
T Consensus 53 ast~ik~s~DGq--Y~lAtG~YKP~ikvydlanL--SLKFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak~--- 124 (703)
T KOG2321|consen 53 ASTRIKVSPDGQ--YLLATGTYKPQIKVYDLANL--SLKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAKY--- 124 (703)
T ss_pred ccceeEecCCCc--EEEEecccCCceEEEEcccc--eeeeeecccccceeEEEecc-chhhheEeecCceeeehhhc---
Confidence 557788899883 67788888899999998532 2334433 34444333333 55666666666665441100
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEec
Q 000703 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l 293 (1342)
++-+. + -.|-.+.+++|+.-.--|..++...+|+-++|+-|+-+..+..
T Consensus 125 -----G~hy~----------~----------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 125 -----GRHYR----------T----------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred -----Ceeee----------e----------------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 01010 0 0122344567776666788999999999999999999887766
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhc
Q 000703 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1342)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~ 373 (1342)
..+....+ -.++-..+|+||.+||.|..||.++...+..+.- ...+++.......|+|+++.|.-+
T Consensus 174 ~~~~lN~v--~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~-~~~v~s~pg~~~~~svTal~F~d~----------- 239 (703)
T KOG2321|consen 174 DSGELNVV--SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA-ASSVNSHPGGDAAPSVTALKFRDD----------- 239 (703)
T ss_pred ccccceee--eecCccceEEecccCceEEEecchhhhhheeeec-ccccCCCccccccCcceEEEecCC-----------
Confidence 54444444 3456677999999999999999886654444421 111222222223335666665432
Q ss_pred CCCCCCCCCccccCCCCcccccccccCccEEEEEEcCCcEEEEEcccccccccccccccccCCcccccccccCcccccCc
Q 000703 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1342)
Q Consensus 374 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~s~DG~v~lWdl~~~~~~~~~~~~~~~~~~~~v~~v~~~g~~l~~~~ 453 (1342)
|-+++.|.++|.|.++|+.+.+.+.. +
T Consensus 240 ---------------------------gL~~aVGts~G~v~iyDLRa~~pl~~-k------------------------- 266 (703)
T KOG2321|consen 240 ---------------------------GLHVAVGTSTGSVLIYDLRASKPLLV-K------------------------- 266 (703)
T ss_pred ---------------------------ceeEEeeccCCcEEEEEcccCCceee-c-------------------------
Confidence 56899999999999999976432110 0
Q ss_pred CcCcceeeccccccccccCCCCCCCCCCCcccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000703 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1342)
Q Consensus 454 ~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llA 533 (1342)
+ ++...+|-.+.|-+. ..++.|+
T Consensus 267 ----------d---------------------------------h~~e~pi~~l~~~~~--------------~~q~~v~ 289 (703)
T KOG2321|consen 267 ----------D---------------------------------HGYELPIKKLDWQDT--------------DQQNKVV 289 (703)
T ss_pred ----------c---------------------------------cCCccceeeeccccc--------------CCCceEE
Confidence 0 011234555566551 1355565
Q ss_pred EEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecC
Q 000703 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1342)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d 579 (1342)
+. ....++|||-.+|+....+.. +..++.+++.|++-++-++-+
T Consensus 290 S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 290 SM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecC
Confidence 53 567899999999987766543 345899999988766655544
No 248
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.72 E-value=7.5e-07 Score=98.63 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=92.4
Q ss_pred CCceEeCCCC---eEEEEcC--CeEEEEeCCCcce--eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCC
Q 000703 27 FGSADLSPSG---LLAFASG--SSISILDSRSLQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1342)
Q Consensus 27 ~~a~~~s~~g---llA~gs~--~~V~v~d~~s~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1342)
.+.++..|.- +|||.+. +.|.|.|...-+. -..++.|.. .|.||+..-+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-----------~Iacv~Ln~~------------- 192 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-----------DIACVALNLQ------------- 192 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-----------ceeEEEEcCC-------------
Confidence 3466666642 8999764 7999999876555 367889998 9999999876
Q ss_pred CCcEEEEEeCCCc-EEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC
Q 000703 100 SHLLLAAADRHGR-VALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS 168 (1342)
Q Consensus 100 ~g~~LASg~~dG~-V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t 168 (1342)
|.+||||+..|| |||||..+|+.+.+|. .|.....|++|+|||+. .+||++|..|||.|+.+..
T Consensus 193 -Gt~vATaStkGTLIRIFdt~~g~~l~E~R-RG~d~A~iy~iaFSp~~---s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 193 -GTLVATASTKGTLIRIFDTEDGTLLQELR-RGVDRADIYCIAFSPNS---SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -ccEEEEeccCcEEEEEEEcCCCcEeeeee-cCCchheEEEEEeCCCc---cEEEEEcCCCeEEEEEeec
Confidence 689999999997 6699999999999973 44433379999999987 8999999999999998763
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2.5e-06 Score=100.35 Aligned_cols=281 Identities=14% Similarity=0.235 Sum_probs=163.1
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeeecC-CCeEEEEEcCCC--cEE
Q 000703 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVP-LVALGTQSGAVDVVDVSANAVTASFSVHN-GTVRGLRWLGNS--RLV 574 (1342)
Q Consensus 499 g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~-llAsGs~DGtI~lWDl~tg~~~~~l~gH~-~~V~~l~fs~d~--~ll 574 (1342)
.++..-|.|.++| +|+ ++|+|..--.|++||+.. +.-.|.-|. +.|..+....|. +.+
T Consensus 49 e~p~ast~ik~s~----------------DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v 110 (703)
T KOG2321|consen 49 EMPTASTRIKVSP----------------DGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSV 110 (703)
T ss_pred CCccccceeEecC----------------CCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhhe
Confidence 3667778899998 455 668999999999999964 334566675 334344333222 222
Q ss_pred EEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccC
Q 000703 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL 654 (1342)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~ 654 (1342)
-.-.| .+|.+- ..-|..-.+|. | ..-+.++++.-..-|.+++....|.-.++ ..|..++.+..
T Consensus 111 ~L~~D----------R~IefH-ak~G~hy~~RI---P--~~GRDm~y~~~scDly~~gsg~evYRlNL-EqGrfL~P~~~ 173 (703)
T KOG2321|consen 111 FLQND----------RTIEFH-AKYGRHYRTRI---P--KFGRDMKYHKPSCDLYLVGSGSEVYRLNL-EQGRFLNPFET 173 (703)
T ss_pred EeecC----------ceeeeh-hhcCeeeeeec---C--cCCccccccCCCccEEEeecCcceEEEEc-ccccccccccc
Confidence 11111 122111 11122111110 0 11234555533333334444445566677 57777765541
Q ss_pred ---ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEE
Q 000703 655 ---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGV 731 (1342)
Q Consensus 655 ---~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~l 731 (1342)
.++++..+ +...+||+|..||.|-.
T Consensus 174 ~~~~lN~v~in----------------------------------------------------~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 174 DSGELNVVSIN----------------------------------------------------EEHGLLACGTEDGVVEF 201 (703)
T ss_pred ccccceeeeec----------------------------------------------------CccceEEecccCceEEE
Confidence 12222211 22357888999999999
Q ss_pred EEecCCe-ee--ccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeee--ccccccEEEEEEec
Q 000703 732 FEVHGRR-IR--DFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQF--STHREGIRRIKFSP 804 (1342)
Q Consensus 732 wdv~g~~-v~--d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l--~~H~~~V~~v~fSP 804 (1342)
||...+. +. ++....+..........|+++.| ||=.++.|.++|.|.|+|+++.+..-. .+..-+|..+.|-+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 9985432 21 21112111111122345999999 477899999999999999999873333 44567899999987
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 805 VVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 805 d~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
.... ..|+++ .-..++|||-.+|++... . .+ ...+.++++-|+ .+ ++.+|-.++.+-.|=++
T Consensus 282 ~~~q----~~v~S~-Dk~~~kiWd~~~Gk~~as-i-Ep---t~~lND~C~~p~-----sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 282 TDQQ----NKVVSM-DKRILKIWDECTGKPMAS-I-EP---TSDLNDFCFVPG-----SG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCC----ceEEec-chHHhhhcccccCCceee-c-cc---cCCcCceeeecC-----Cc-eEEEecCCCcceeEEcc
Confidence 6222 345555 667899999999986532 1 11 245888999986 44 35677777766655544
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=8.7e-07 Score=98.61 Aligned_cols=237 Identities=18% Similarity=0.296 Sum_probs=149.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-----EEEEeeecC------------CCeEEEEEcCCC---cEEEEecCCcccccCc
Q 000703 528 AVPLVALGTQSGAVDVVDVSANA-----VTASFSVHN------------GTVRGLRWLGNS---RLVSFSYSQVNEKSGG 587 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~-----~~~~l~gH~------------~~V~~l~fs~d~---~llS~s~d~~~~~sg~ 587 (1342)
+|.+||+|..+|-|.++.-+... ...++.-|. ..|..|+|.+++ .++...-
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN--------- 106 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN--------- 106 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC---------
Confidence 68999999999999999754221 344555554 368889998766 3343222
Q ss_pred ccCEEEEEEcCCCce---------------------------------eeeEEeccCCCCCeEEEEEcCCCCEEEEEECC
Q 000703 588 YINRLVVTCLRSGIN---------------------------------RAFRVLQKPERAPIRALRASSSGRYLLILFRD 634 (1342)
Q Consensus 588 ~~~~i~lwD~~tG~~---------------------------------~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D 634 (1342)
+.+|++|.+..... .+.|.....|.--|.+|.++.|+..++++ .|
T Consensus 107 -dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 107 -DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred -CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 34899998743211 12223333477789999999999998875 67
Q ss_pred CCEEEEeccCCcceeeecc-Cc---------eEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCC
Q 000703 635 APVEVWAMTKNPIMLRSLA-LP---------FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDS 704 (1342)
Q Consensus 635 ~tIkvWDl~kt~~~l~~l~-~~---------vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 704 (1342)
=.|.+|++..+.+...-.. +| +|+.+|+|.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~---------------------------------------- 224 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH---------------------------------------- 224 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh----------------------------------------
Confidence 7899999842222111000 00 233333321
Q ss_pred cCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeec-----cC-CCCCCC-c-cccccceEEEEee--cCCEEEEEeCC
Q 000703 705 KDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRD-----FR-PKWPSS-S-FISSDGLITAMAY--RLPHVVMGDRS 774 (1342)
Q Consensus 705 ~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d-----~~-~~~~~~-~-~~~~~~~V~~va~--dg~~LasGs~D 774 (1342)
....|+-.+.-|+|++.|++..-+=| +. +.-|.. + |.+...+|..|-| .|++|++-+-
T Consensus 225 -----------~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy- 292 (433)
T KOG1354|consen 225 -----------HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY- 292 (433)
T ss_pred -----------HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-
Confidence 24578888999999999996432211 10 111111 1 2334456778888 7899888443
Q ss_pred CcEEEEECCC--Cceeeecccc------------ccE---EEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 775 GNIRWWDVTT--GHSSQFSTHR------------EGI---RRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 775 gtI~lWDl~t--g~~~~l~~H~------------~~V---~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
-+|++||+.. +.+.+++.|. ..| ..+.||-+ + .++++|+..+.+++++++.+.
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~--~----~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN--D----SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC--c----ceEecccccceEEEecCCCCc
Confidence 6899999954 3366666664 222 34667766 3 689999999999999977664
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=3e-06 Score=104.28 Aligned_cols=235 Identities=14% Similarity=0.181 Sum_probs=134.4
Q ss_pred cEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEE
Q 000703 540 AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRAL 619 (1342)
Q Consensus 540 tI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i 619 (1342)
.|.++|... ...+.+..+...+....|+|||+.+++.... .+ ...|.++|+.+|+.+.+.... ......
T Consensus 199 ~l~i~d~dG-~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~----~g--~~~L~~~dl~tg~~~~lt~~~----g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDG-YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE----NR--KAEIFVQDIYTQVREKVTSFP----GINGAP 267 (448)
T ss_pred EEEEEeCCC-CCceEeecCCCcccCceECCCCCEEEEEEec----CC--CcEEEEEECCCCCeEEecCCC----CCcCCe
Confidence 577778644 3345566677889999999999777665432 11 247999999998754444322 233467
Q ss_pred EEcCCCCEEEE-EECCCC--EEEEeccCCcceeeeccC--ceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcc
Q 000703 620 RASSSGRYLLI-LFRDAP--VEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVS 694 (1342)
Q Consensus 620 ~~Spdg~~Las-~s~D~t--IkvWDl~kt~~~l~~l~~--~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~ 694 (1342)
+|||||+.|+. ...++. |.+||+ .+++..+.... ......|+|+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl-~tg~~~~lt~~~~~~~~p~wSpD------------------------------ 316 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDI-ATKALTRITRHRAIDTEPSWHPD------------------------------ 316 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEEC-CCCCeEECccCCCCccceEECCC------------------------------
Confidence 99999998875 456665 666677 45543321111 1234556654
Q ss_pred cccccCCCCCcCCCCCCcCCCCCCeEEEEe-cCC--CEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEE
Q 000703 695 TPTIASSSDSKDASSEGSQDDTSESFAFAL-ANG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771 (1342)
Q Consensus 695 ~~~~~~~~~~~~~~s~~s~~~~~e~la~~~-~Dg--tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasG 771 (1342)
+..+++.+ .+| .|+++++++...+.+. +. +....-.+++.||++|+..
T Consensus 317 ----------------------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--~~-----g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 317 ----------------------GKSLIFTSERGGKPQIYRVNLASGKVSRLT--FE-----GEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred ----------------------CCEEEEEECCCCCceEEEEECCCCCEEEEe--cC-----CCCCcCeeECCCCCEEEEE
Confidence 33444443 233 4556666554443210 01 1111112344499988776
Q ss_pred eC-CC--cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEEC-CC--eEEEEECCCCCcccccccCCCCC
Q 000703 772 DR-SG--NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFH-DN--TFSVFDLDSQDPLANSLLQPQFP 845 (1342)
Q Consensus 772 s~-Dg--tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~-Dg--tI~IWDl~t~~~l~~~l~~gh~~ 845 (1342)
+. ++ .|.++|+.+++...+... .......|+|+ | ++|+.... ++ .+.++|++... . ..+ ..+
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spd--G----~~I~~~~~~~g~~~l~~~~~~G~~-~-~~l-~~~-- 435 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPN--G----TMVIYSTTYQGKQVLAAVSIDGRF-K-ARL-PAG-- 435 (448)
T ss_pred EecCCceEEEEEECCCCCeEEccCC-CCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCc-e-EEC-cCC--
Confidence 55 34 456678888876555322 22335579999 5 66665543 33 36677875443 1 222 222
Q ss_pred CCcEEEEEEeCC
Q 000703 846 GTLVLELDWLPT 857 (1342)
Q Consensus 846 ~~~V~~l~ws~d 857 (1342)
.+.+...+|+|.
T Consensus 436 ~g~~~~p~Wsp~ 447 (448)
T PRK04792 436 QGEVKSPAWSPF 447 (448)
T ss_pred CCCcCCCccCCC
Confidence 245677889873
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=6.1e-06 Score=100.91 Aligned_cols=224 Identities=12% Similarity=0.023 Sum_probs=126.9
Q ss_pred eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCC--cEEEEeCCCCe
Q 000703 45 SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHG--RVALLDFRLRS 122 (1342)
Q Consensus 45 ~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG--~V~vWD~~~g~ 122 (1342)
.|.+.|...+...+ |..+.. .+..=+|||||.. -.++.+...+| .|.+.|+.+|+
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~-----------~~~sP~wSPDG~~-----------~~~~y~S~~~g~~~I~~~~l~~g~ 222 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHS-----------LSITPTWMHIGSG-----------FPYLYVSYKLGVPKIFLGSLENPA 222 (428)
T ss_pred eEEEEcCCCCCceE-cccCCC-----------CcccceEccCCCc-----------eEEEEEEccCCCceEEEEECCCCC
Confidence 67778876554433 443433 4556789988621 01223455555 46666888876
Q ss_pred EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe-C----CCeEEEEECCCC---eEEEEEeCCCCceEEEEecCCCCCE
Q 000703 123 VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN-G----PSVLSLYNTTSA---SCMWKYDASPEYLSCIRRNPFDARH 194 (1342)
Q Consensus 123 ~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s-~----d~~i~lWd~~tg---~~i~~~~~~~~~v~~v~fsP~d~~~ 194 (1342)
.......++ .....+|+||| +.||..+ . +-.+.+||+.+| +...............+|+| |+++
T Consensus 223 ~~~lt~~~g----~~~~p~wSPDG---~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~ 294 (428)
T PRK01029 223 GKKILALQG----NQLMPTFSPRK---KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTR 294 (428)
T ss_pred ceEeecCCC----CccceEECCCC---CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCE
Confidence 544432332 34567899988 5555443 2 334556887653 32222222123345679999 9999
Q ss_pred EEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc
Q 000703 195 FCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF 273 (1342)
Q Consensus 195 la~~s~-dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~ 273 (1342)
|+..+. +|...+|.+.-... .. ...++.. ....+...+|||||+.|++.+.
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~----g~---------~~~~lt~---------------~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPE----GQ---------SPRLLTK---------------KYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred EEEEECCCCCceEEEEECccc----cc---------ceEEecc---------------CCCCccceeECCCCCEEEEEEc
Confidence 888764 55444443211000 00 0000100 0112334589999999999875
Q ss_pred C---CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeC---CCcEEEEEccCCc
Q 000703 274 P---RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHL---DGKLSIWRRKEGE 330 (1342)
Q Consensus 274 d---~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~---DgtI~lW~~~~g~ 330 (1342)
+ ..|.+||+++++... +. .+........++|||+.|+.... +..|.+|+..+++
T Consensus 347 ~~g~~~I~v~dl~~g~~~~-Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 347 IKGVRQICVYDLATGRDYQ-LT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCCcEEEEEECCCCCeEE-cc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4 479999999987643 22 12223445678999998775443 3467777877665
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=4e-06 Score=102.91 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=122.9
Q ss_pred EEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC---CCEEEEeccCCcceee--eccCceEEEEEcCCC
Q 000703 591 RLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD---APVEVWAMTKNPIMLR--SLALPFTVLEWTLPT 665 (1342)
Q Consensus 591 ~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D---~tIkvWDl~kt~~~l~--~l~~~vt~l~wsp~~ 665 (1342)
+|.++|...+..+.+. . +..++...+|||||++|+..+.+ ..|.+||+ .+++..+ ..........|+|+
T Consensus 180 ~l~~~d~~g~~~~~l~---~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l-~~g~~~~l~~~~g~~~~~~~SpD- 253 (430)
T PRK00178 180 TLQRSDYDGARAVTLL---Q-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNL-DTGRREQITNFEGLNGAPAWSPD- 253 (430)
T ss_pred EEEEECCCCCCceEEe---c-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEEC-CCCCEEEccCCCCCcCCeEECCC-
Confidence 6888888765533332 2 45678999999999999877644 35888898 5664432 12222234567654
Q ss_pred CCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEE-ecCC--CEEEEEecCCeeecc
Q 000703 666 VPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA-LANG--ALGVFEVHGRRIRDF 742 (1342)
Q Consensus 666 ~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~-~~Dg--tI~lwdv~g~~v~d~ 742 (1342)
++.+++. ..+| .|++||+++..++.+
T Consensus 254 ---------------------------------------------------G~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 254 ---------------------------------------------------GSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred ---------------------------------------------------CCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 3445433 3344 578888876655322
Q ss_pred CCCCCCCccccccceEEEEee--cCCEEEEEe-CCC--cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEE
Q 000703 743 RPKWPSSSFISSDGLITAMAY--RLPHVVMGD-RSG--NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAV 817 (1342)
Q Consensus 743 ~~~~~~~~~~~~~~~V~~va~--dg~~LasGs-~Dg--tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las 817 (1342)
. .+.+.....+| ||+.|+..+ .+| .|.++|+.+++...+...........|||+ | ++|+.
T Consensus 283 t---------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spd--g----~~i~~ 347 (430)
T PRK00178 283 T---------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSAD--G----KTLVM 347 (430)
T ss_pred c---------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCC--C----CEEEE
Confidence 1 11122334455 888877654 333 577888888875544322234456789999 5 67776
Q ss_pred EEC-CC--eEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 818 LFH-DN--TFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 818 ~s~-Dg--tI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
... ++ .|.+||+.+++. ..+... .......|+|+ |+. ++.+...+|.-++|-+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~--~~lt~~----~~~~~p~~spd----g~~-i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV--RILTDT----SLDESPSVAPN----GTM-LIYATRQQGRGVLMLVS 404 (430)
T ss_pred EEccCCceEEEEEECCCCCE--EEccCC----CCCCCceECCC----CCE-EEEEEecCCceEEEEEE
Confidence 654 33 577889988763 222111 12235689998 553 34445455555555444
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.5e-06 Score=103.70 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=118.7
Q ss_pred CEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC-C--CEEEEeccCCcce--eeeccCceEEEEEcCC
Q 000703 590 NRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD-A--PVEVWAMTKNPIM--LRSLALPFTVLEWTLP 664 (1342)
Q Consensus 590 ~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D-~--tIkvWDl~kt~~~--l~~l~~~vt~l~wsp~ 664 (1342)
.+|.++|...+..+.+. . +..++...+|||||++|+..+.+ + .|.+||+ .+++. +..+........|+|+
T Consensus 198 ~~l~i~d~dG~~~~~l~---~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl-~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDGYNEQMLL---R-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI-YTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCCCCceEee---c-CCCcccCceECCCCCEEEEEEecCCCcEEEEEEC-CCCCeEEecCCCCCcCCeeECCC
Confidence 36778887554433332 2 44678889999999999876543 3 4788888 56543 2222222234566654
Q ss_pred CCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEE-EecCCC--EEEEEecCCeeec
Q 000703 665 TVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF-ALANGA--LGVFEVHGRRIRD 741 (1342)
Q Consensus 665 ~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~-~~~Dgt--I~lwdv~g~~v~d 741 (1342)
++.+++ ...+|. |+++|+++..++.
T Consensus 273 ----------------------------------------------------G~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 273 ----------------------------------------------------GKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred ----------------------------------------------------CCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 344554 455665 7777876665543
Q ss_pred cCCCCCCCccccccceEEEEee--cCCEEEEEeC-CC--cEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEE
Q 000703 742 FRPKWPSSSFISSDGLITAMAY--RLPHVVMGDR-SG--NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIA 816 (1342)
Q Consensus 742 ~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~-Dg--tI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~La 816 (1342)
+. .+.......+| ||+.|+..+. +| .|.++|+.+++...+..+.......+|+|| | ++|+
T Consensus 301 lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD--G----~~l~ 365 (448)
T PRK04792 301 IT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD--G----RSMI 365 (448)
T ss_pred Cc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC--C----CEEE
Confidence 21 12222344556 8988776543 44 466778888875554333334456789999 5 6676
Q ss_pred EEEC-CCeEEE--EECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEE
Q 000703 817 VLFH-DNTFSV--FDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1342)
Q Consensus 817 s~s~-DgtI~I--WDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWd 880 (1342)
..+. ++..+| +|+++++. ..+... .......|+|+ |+. ++.+...+|.-++|-
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~--~~lt~~----~~d~~ps~spd----G~~-I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAM--QVLTST----RLDESPSVAPN----GTM-VIYSTTYQGKQVLAA 421 (448)
T ss_pred EEEecCCceEEEEEECCCCCe--EEccCC----CCCCCceECCC----CCE-EEEEEecCCceEEEE
Confidence 6543 444444 68877752 122111 11234579998 553 344555666544443
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=2.5e-05 Score=94.12 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=117.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
+.+|..++.+|.|.-+|..+|+.+-.+.+.+.-. .... .++ ..+.+++.++.+..+|..+|+.+|+.... +
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~---~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADG---GLVFVGTEKGEVIALDAEDGKELWRAKLS-S 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcC---CEEEEEcCCCEEEEEECCCCcEeeeeccC-c
Confidence 5678888899999999999998876654432111 1111 122 56667778999999999999999998763 3
Q ss_pred ceEEEEecCC-CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000703 181 YLSCIRRNPF-DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1342)
Q Consensus 181 ~v~~v~fsP~-d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1342)
.+. -+|. ++.++.+.+.+|.++.+|..... ..|......+.. .+. ....|
T Consensus 136 ~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~------~~W~~~~~~~~~-~~~-------------~~~sp------ 186 (377)
T TIGR03300 136 EVL---SPPLVANGLVVVRTNDGRLTALDAATGE------RLWTYSRVTPAL-TLR-------------GSASP------ 186 (377)
T ss_pred eee---cCCEEECCEEEEECCCCeEEEEEcCCCc------eeeEEccCCCce-eec-------------CCCCC------
Confidence 222 1221 34567777788999999864311 112110000000 000 00001
Q ss_pred EEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc--cc---eEEEEEcC--CCCEEEEEeCCCcEEEEEccCCcee
Q 000703 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC--AK---FLDVLADP--NNDLLYCAHLDGKLSIWRRKEGEQV 332 (1342)
Q Consensus 260 aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~~---~~~v~~~p--dg~~L~s~~~DgtI~lW~~~~g~~~ 332 (1342)
.+. + ..++++..++.+..+|+++|+.+......... .. ...+..+| .++.++.++.+|.+..+|.++|+.+
T Consensus 187 ~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 187 VIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred EEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 111 2 35666667899999999999887654332110 00 01111122 4678999999999999999999865
Q ss_pred eeE
Q 000703 333 HVM 335 (1342)
Q Consensus 333 ~~~ 335 (1342)
+..
T Consensus 265 W~~ 267 (377)
T TIGR03300 265 WKR 267 (377)
T ss_pred Eee
Confidence 543
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=5.3e-07 Score=107.04 Aligned_cols=211 Identities=14% Similarity=0.197 Sum_probs=147.2
Q ss_pred cCCCCEEEEEECCCCEEEEeccCCcceeeecc------CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCccc
Q 000703 622 SSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVST 695 (1342)
Q Consensus 622 Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~------~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~ 695 (1342)
.|-+.|+|....||.++|||. ..+++..++. ..-+...|.......+ .|-.+.+ |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~-----~k~~~~~-------------~ 62 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSP-----MKWLSLE-------------K 62 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccch-----HHHHhHH-------------H
Confidence 355789999999999999998 6777666554 1124456653211111 0000000 0
Q ss_pred ccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeC
Q 000703 696 PTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDR 773 (1342)
Q Consensus 696 ~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~ 773 (1342)
.. ....+-..++-|...|.|.++++.+..+.- ++..+ +|.+.|+++.+ +-..|.|++.
T Consensus 63 ---------~~-----~~s~~t~~lvlgt~~g~v~~ys~~~g~it~---~~st~---~h~~~v~~~~~~~~~~ciyS~~a 122 (541)
T KOG4547|consen 63 ---------AK-----KASLDTSMLVLGTPQGSVLLYSVAGGEITA---KLSTD---KHYGNVNEILDAQRLGCIYSVGA 122 (541)
T ss_pred ---------Hh-----hccCCceEEEeecCCccEEEEEecCCeEEE---EEecC---CCCCcceeeecccccCceEecCC
Confidence 00 000122457778899999999998777631 22222 58899999998 5568999999
Q ss_pred CCcEEEEECCCCc-eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEE
Q 000703 774 SGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLEL 852 (1342)
Q Consensus 774 DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l 852 (1342)
|+.+-.|+.+.++ .+.+..-+..+.++..+|| | +.|+++ .+.|++||+++++ +..++ .||. ++|..+
T Consensus 123 d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D--~----~~l~~a--s~~ik~~~~~~ke-vv~~f-tgh~--s~v~t~ 190 (541)
T KOG4547|consen 123 DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD--G----KILLTA--SRQIKVLDIETKE-VVITF-TGHG--SPVRTL 190 (541)
T ss_pred ceeEEEEecccceeeeeeccCCCccceEEEcCC--C----CEEEec--cceEEEEEccCce-EEEEe-cCCC--cceEEE
Confidence 9999999999987 5778888899999999999 4 667766 4679999999998 55555 7886 789999
Q ss_pred EEeCC-CCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 853 DWLPT-RTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 853 ~ws~d-~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
.|... ....|. ++|.++..+.-|-+|-+...
T Consensus 191 ~f~~~~~g~~G~-~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 191 SFTTLIDGIIGK-YVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEeccccccc-eeeeccccccceeEEEEEcc
Confidence 99864 111233 35778888888999988743
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.7e-05 Score=91.05 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=92.2
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCC--CEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEec
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAV--PLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~--~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~ 578 (1342)
.++|.++.|+|. + --++-|-+=-++-|+|+. +.++..| -.++=+++-|+|.|+++.++.
T Consensus 270 ~GPVhdv~W~~s----------------~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 270 EGPVHDVTWSPS----------------GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred CCCceEEEECCC----------------CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEee
Confidence 478999999982 3 245667788899999984 4554444 356667899999998877664
Q ss_pred CCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEE------CCCCEEEEeccCCcceeeec
Q 000703 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILF------RDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s------~D~tIkvWDl~kt~~~l~~l 652 (1342)
.|.-.+.+-+||+.+-+ .+..+ ....-+-..|+|||+|++++. -|+.++||+. +|.++..-
T Consensus 331 ------FGNL~G~mEvwDv~n~K--~i~~~---~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy--tG~~l~~~ 397 (566)
T KOG2315|consen 331 ------FGNLPGDMEVWDVPNRK--LIAKF---KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY--TGSLLHEK 397 (566)
T ss_pred ------cCCCCCceEEEeccchh--hcccc---ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe--cCceeehh
Confidence 23445789999998855 44432 223446689999999999885 3788999998 77777542
Q ss_pred c--CceEEEEEcC
Q 000703 653 A--LPFTVLEWTL 663 (1342)
Q Consensus 653 ~--~~vt~l~wsp 663 (1342)
. .....++|-|
T Consensus 398 ~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 398 MFKSELLQVEWRP 410 (566)
T ss_pred hhhHhHhheeeee
Confidence 2 1134567764
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=5e-06 Score=101.66 Aligned_cols=205 Identities=13% Similarity=0.135 Sum_probs=119.4
Q ss_pred EEeCCC--cEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCce-eeeEEecc
Q 000703 534 LGTQSG--AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-RAFRVLQK 610 (1342)
Q Consensus 534 sGs~DG--tI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-~~l~~l~g 610 (1342)
+...+| .|.+.|+.+|+.. .+....+.....+|+|||+.|++..+. .|..+-.+.+||+.+|.. ...+...+
T Consensus 204 ~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~----~g~~di~~~~~~~~~g~~g~~~~lt~~ 278 (428)
T PRK01029 204 VSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDR----YGNPDLFIQSFSLETGAIGKPRRLLNE 278 (428)
T ss_pred EEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECC----CCCcceeEEEeecccCCCCcceEeecC
Confidence 444444 5777788877543 333334445568999999777776542 233333455688775321 12222222
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-CCCCEEEEecc-C-Ccceeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCC
Q 000703 611 PERAPIRALRASSSGRYLLILF-RDAPVEVWAMT-K-NPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1342)
Q Consensus 611 ~h~~~I~~i~~Spdg~~Las~s-~D~tIkvWDl~-k-t~~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1342)
+........|||||++|+..+ .++..+||.+. . .+...+.+. ..+....|+|+
T Consensus 279 -~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD-------------------- 337 (428)
T PRK01029 279 -AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD-------------------- 337 (428)
T ss_pred -CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC--------------------
Confidence 223345679999999988766 46766777541 1 111122111 12334566654
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecC---CCEEEEEecCCeeeccCCCCCCCccccccceEEEE
Q 000703 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALAN---GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAM 761 (1342)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~D---gtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~v 761 (1342)
++.+++...+ ..|++||+.+...+.+. .....+...
T Consensus 338 --------------------------------G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p 376 (428)
T PRK01029 338 --------------------------------GKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESP 376 (428)
T ss_pred --------------------------------CCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccce
Confidence 3455555432 36889999766554321 111224456
Q ss_pred ee--cCCEEEEEeC---CCcEEEEECCCCceeeeccccccEEEEEEecC
Q 000703 762 AY--RLPHVVMGDR---SGNIRWWDVTTGHSSQFSTHREGIRRIKFSPV 805 (1342)
Q Consensus 762 a~--dg~~LasGs~---DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd 805 (1342)
+| ||++|+.... ...|.+||+.+++.+.+....+.+...+|||-
T Consensus 377 ~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 377 SWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 66 8988775432 35788999988887666556677788888885
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.60 E-value=0.0011 Score=87.90 Aligned_cols=264 Identities=18% Similarity=0.290 Sum_probs=145.7
Q ss_pred CCCCEEEEEeC---C---CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 527 VAVPLVALGTQ---S---GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 527 ~~~~llAsGs~---D---GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
+||.++|+.+. . ..||||+-+ |.+..+-..-.+--..++|.|.|.+++.+.... .+..|..|. ++|
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~------~~~~VvFfE-rNG 290 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP------DRHDVVFFE-RNG 290 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC------CCcEEEEEe-cCC
Confidence 48999998875 3 479999975 655433322222223578999999887765321 123555554 455
Q ss_pred ce-eeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceee--ecc----CceEEEEEcCCCCCCCCCCC
Q 000703 601 IN-RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR--SLA----LPFTVLEWTLPTVPWPSQTG 673 (1342)
Q Consensus 601 ~~-~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~--~l~----~~vt~l~wsp~~~~~~~~~~ 673 (1342)
.. ..|..-..+....|..|.|++|+..||+...|. |++|-+ .+-.-.- ++. ..+..+.|+|..
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~-~NYHWYLKqei~~~~~~~~~~~~Wdpe~-------- 360 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR-SNYHWYLKQEIRFSSSESVNFVKWDPEK-------- 360 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe-eCCEEEEEEEEEccCCCCCCceEECCCC--------
Confidence 31 112211113567899999999999999988665 999987 4433211 111 112236676431
Q ss_pred CCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCCCCCCcccc
Q 000703 674 PSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFIS 753 (1342)
Q Consensus 674 ~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~ 753 (1342)
...|.....+|.+..++..-..... ...+ .
T Consensus 361 -------------------------------------------p~~L~v~t~~g~~~~~~~~~~v~~s--~~~~-----~ 390 (928)
T PF04762_consen 361 -------------------------------------------PLRLHVLTSNGQYEIYDFAWDVSRS--PGSS-----P 390 (928)
T ss_pred -------------------------------------------CCEEEEEecCCcEEEEEEEEEEEec--CCCC-----c
Confidence 1345666666777665442111100 0000 1
Q ss_pred ccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc------eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEE
Q 000703 754 SDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH------SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSV 826 (1342)
Q Consensus 754 ~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg~------~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~I 826 (1342)
++.. .++. ||+. +++=.++..- ...+ .-...|..|+|+++ + ..+|+...||+|.+
T Consensus 391 ~D~g--~vaVIDG~~---------lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~--~----~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 391 NDNG--TVAVIDGNK---------LLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS--N----SRFAVLTSDGSLSI 452 (928)
T ss_pred cCce--EEEEEeCCe---------EEEecccccCCCchHhceEE-cCCCCcEEEEEeCC--C----CeEEEEECCCCEEE
Confidence 1111 1222 5543 4444554432 1222 23578999999998 3 45899999999999
Q ss_pred EECCCCCcc-------cccccC-----CC--CCCCcEEEEEEeCCCCCCCCCeEEEEEeC---CCcEEEEEcc
Q 000703 827 FDLDSQDPL-------ANSLLQ-----PQ--FPGTLVLELDWLPTRTDKNDPLVLCIAGA---DSSFRLIEVN 882 (1342)
Q Consensus 827 WDl~t~~~l-------~~~l~~-----gh--~~~~~V~~l~ws~d~~~~g~~~~L~s~s~---DgtIrvWdi~ 882 (1342)
|+....... ...... .+ .....+..+.|..+ +.+ ++.... -..+.++++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 453 YEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLND-----DTL-LVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred EEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCC-----CEE-EEEEecCcccceEEEEEec
Confidence 985443211 001100 00 11245788999876 333 333333 3677888773
No 260
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.5e-05 Score=95.08 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHH
Q 000703 1169 KVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILY 1248 (1342)
Q Consensus 1169 k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 1248 (1342)
-.+|...|..|+++|+-++|-.+-+++-.=+++|+.|+|.+|+.+|.++=.-. .+.-..++|.||.... .+..|++-|
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~-Di~~Aleyy 881 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARR-DIEAALEYY 881 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhc-cHHHHHHHH
Confidence 35677788899999999999999999999999999999999999999872111 3677889999996554 378999999
Q ss_pred HHhCCH-HHHHHHHHh
Q 000703 1249 VAAGGL-QEALAALRE 1263 (1342)
Q Consensus 1249 ~~~g~~-~~~~~~l~~ 1263 (1342)
-++|.+ +++-.||.+
T Consensus 882 EK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HhcCChHHHHHHHHHh
Confidence 998876 455666654
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.59 E-value=6.7e-05 Score=88.19 Aligned_cols=272 Identities=13% Similarity=0.156 Sum_probs=158.6
Q ss_pred CcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCc-ccccCcccCEEEEEEcCCCceeeeEEeccCCC----
Q 000703 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV-NEKSGGYINRLVVTCLRSGINRAFRVLQKPER---- 613 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~-~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~---- 613 (1342)
|+|.|.|..+++++..+..-..+ +.+ +++|++.+-.+.... -..-|.-++.|.+||+.|++ .++.+.-+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence 89999999999999888754433 245 899986554333200 00113344689999999988 4544432211
Q ss_pred --CCeEEEEEcCCCCEEEEEE-C-CCCEEEEeccCCcceeeeccCce--EEEEEcCCCCCCCCCCCCCCccccccCCCCC
Q 000703 614 --APIRALRASSSGRYLLILF-R-DAPVEVWAMTKNPIMLRSLALPF--TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKA 687 (1342)
Q Consensus 614 --~~I~~i~~Spdg~~Las~s-~-D~tIkvWDl~kt~~~l~~l~~~v--t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~ 687 (1342)
..-..+++||||++|.+.- . +..|-|.|+ .+++.+.++.-+- ....++
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~-~~~kvv~ei~vp~~~~vy~t~------------------------- 156 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL-EGKAFVRMMDVPDCYHIFPTA------------------------- 156 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEEC-CCCcEEEEEeCCCCcEEEEec-------------------------
Confidence 1224789999999998764 3 789999999 7888887665211 001111
Q ss_pred ccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe--cCCeeeccCCCCCC-CccccccceEEEEee-
Q 000703 688 DTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPS-SSFISSDGLITAMAY- 763 (1342)
Q Consensus 688 i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv--~g~~v~d~~~~~~~-~~~~~~~~~V~~va~- 763 (1342)
.+.+.+.+.||+.....+ +|+....-.+.+.. ...+. ... .+..
T Consensus 157 -----------------------------e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~-~rP--~~~~~ 204 (352)
T TIGR02658 157 -----------------------------NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI-NHP--AYSNK 204 (352)
T ss_pred -----------------------------CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc-cCC--ceEcC
Confidence 111233344444444333 12211000000000 00000 011 2233
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc-----e-eeec-------cccccEEEEEEecCCCCCCCCCEEEEEE----------C
Q 000703 764 RLPHVVMGDRSGNIRWWDVTTGH-----S-SQFS-------THREGIRRIKFSPVVPGDRSRGRIAVLF----------H 820 (1342)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~-----~-~~l~-------~H~~~V~~v~fSPd~~g~~~~~~Las~s----------~ 820 (1342)
||+++..... |+|.+-|+.... . ..+. -..+.+.-++++|+ + +++-++. .
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g----~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--R----DRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC--C----CEEEEEecCCccccccCC
Confidence 7777666555 999999965432 1 1111 12344455999999 4 6766642 1
Q ss_pred CCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCcccc
Q 000703 821 DNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSEKKI 888 (1342)
Q Consensus 821 DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~~~~ 888 (1342)
.+.|.++|.++++.+.+ +..| ..+..++++|| +++++.++-..++.|.+.|+.+.+...
T Consensus 278 ~~~V~ViD~~t~kvi~~-i~vG----~~~~~iavS~D----gkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRK-IELG----HEIDSINVSQD----AKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCEEEEEECCCCeEEEE-EeCC----CceeeEEECCC----CCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 25799999999985533 3233 46899999998 665545555678999999988665443
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.57 E-value=0.00011 Score=88.38 Aligned_cols=232 Identities=15% Similarity=0.202 Sum_probs=136.8
Q ss_pred CCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcE
Q 000703 35 SGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRV 113 (1342)
Q Consensus 35 ~gllA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V 113 (1342)
++.+..+ .++.|.-+|+.+|+.+-....... .... |..++.++..++.+|.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----------~~~~----------------p~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----------LSGG----------------VGADGGLVFVGTEKGEV 117 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----------cccc----------------eEEcCCEEEEEcCCCEE
Confidence 4544444 457888999999988755443332 0001 11235678888899999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEE--ecC-C
Q 000703 114 ALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIR--RNP-F 190 (1342)
Q Consensus 114 ~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~--fsP-~ 190 (1342)
..+|..+|+.+-..... + .+.+..-.. + ..+.....++.|..||..+|+.+|++......+. +. -+| .
T Consensus 118 ~ald~~tG~~~W~~~~~---~-~~~~~p~v~-~---~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~~~~~sp~~ 188 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS---S-EVLSPPLVA-N---GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT-LRGSASPVI 188 (377)
T ss_pred EEEECCCCcEeeeeccC---c-eeecCCEEE-C---CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee-ecCCCCCEE
Confidence 99999999987654332 1 222111111 1 3555667789999999999999999865332211 10 011 0
Q ss_pred CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc----chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC
Q 000703 191 DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC----TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR 266 (1342)
Q Consensus 191 d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~----~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~ 266 (1342)
.+..+.++..+|.++.+|..... ..|...... ....++.. . ...| .+ ++.
T Consensus 189 ~~~~v~~~~~~g~v~ald~~tG~------~~W~~~~~~~~g~~~~~~~~~---~---------~~~p------~~--~~~ 242 (377)
T TIGR03300 189 ADGGVLVGFAGGKLVALDLQTGQ------PLWEQRVALPKGRTELERLVD---V---------DGDP------VV--DGG 242 (377)
T ss_pred ECCEEEEECCCCEEEEEEccCCC------EeeeeccccCCCCCchhhhhc---c---------CCcc------EE--ECC
Confidence 22466777778889888763311 111110000 00000000 0 0000 11 244
Q ss_pred ceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 267 HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 267 ~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
.+..++.++.+..||.++|+.+....... .. .+..++..||.++.||.|..+|..+|+.++.
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDASS----YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeeccCC----cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 67777789999999999999887654221 11 1123577899999999999999999975543
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.8e-06 Score=97.70 Aligned_cols=241 Identities=17% Similarity=0.195 Sum_probs=149.9
Q ss_pred ceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 29 SADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
+..||+|. +.|.=..+.|.++|..+.+.+.. +.|.. .|+...+||.+.+..+.- -...++
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~-----------~i~~f~lSpgp~~~~vAv-------yvPe~k 190 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVS-----------GITMLSLSPGPEPPFVAV-------YVPEKK 190 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccceee-eeecc-----------ceeeEEecCCCCCceEEE-------EccCCC
Confidence 56777776 55556778999999988665432 23555 799999999754422211 112245
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCc-EEEEEe---------CCCeEEEEECCCCeEEEEEeC
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSF-VLAAIN---------GPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~-lLas~s---------~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
+.-+.|+||.+..+..-..+..+..-+..=..+.|.+-+. +- +|++.. +..+|.+.+++.-.+...+..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt-~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT-ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCc-eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 6778899999863322111111111110112356766542 22 233332 335888888874445544544
Q ss_pred CCCceEEEEecCCCCCEEEEEeC--CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000703 178 SPEYLSCIRRNPFDARHFCVLGL--KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1342)
Q Consensus 178 ~~~~v~~v~fsP~d~~~la~~s~--dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1342)
.++|.++.|+| +++.+|++.. =..+-++|..++. ...+ | . .|
T Consensus 270 -~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~-----v~df------------------------~--e-gp-- 313 (566)
T KOG2315|consen 270 -EGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKP-----VFDF------------------------P--E-GP-- 313 (566)
T ss_pred -CCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCE-----eEeC------------------------C--C-CC--
Confidence 68999999999 8988888732 2356666654421 1100 0 0 01
Q ss_pred eEEEEEccCCCceEEEEc---CCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEe------CCCcEEEEEc
Q 000703 256 MVKFTFSPHWRHIIFVTF---PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH------LDGKLSIWRR 326 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~---d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~------~DgtI~lW~~ 326 (1342)
=..+-|+|.|+.++.+++ .|.|-|||+...+.+..+... .-.-+.+||||++++|+. .|..|+||+.
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 123479999999999996 478999999998888766422 233456799999999865 5788999997
Q ss_pred cCCc
Q 000703 327 KEGE 330 (1342)
Q Consensus 327 ~~g~ 330 (1342)
. |.
T Consensus 390 t-G~ 392 (566)
T KOG2315|consen 390 T-GS 392 (566)
T ss_pred c-Cc
Confidence 5 54
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.53 E-value=0.0013 Score=78.50 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=113.3
Q ss_pred CcEEEEeC--CCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC----CCeEEEEECCC--CeE--EEEEeCCCC
Q 000703 111 GRVALLDF--RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING----PSVLSLYNTTS--ASC--MWKYDASPE 180 (1342)
Q Consensus 111 G~V~vWD~--~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~----d~~i~lWd~~t--g~~--i~~~~~~~~ 180 (1342)
+.|.++++ .+|+....-.... .. ....|+++|++ ++|-+++. ++.|..|.+.. |+. +.+......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~-~~-~Ps~l~~~~~~---~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE-GE-NPSWLAVSPDG---RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE-SS-SECCEEE-TTS---SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCCCceEeeeecC-CC-CCceEEEEeCC---CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 67888877 6665432211111 12 45678898876 67777655 57888887764 543 333331234
Q ss_pred ceEEEEecCCCCCEEEEEe-CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000703 181 YLSCIRRNPFDARHFCVLG-LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s-~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1342)
....++++| |++.|.++. .+|.|.++++............+. .++. + +.| ......+..++
T Consensus 88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~----------~~g~--g----~~~-~rq~~~h~H~v 149 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR----------HEGS--G----PNP-DRQEGPHPHQV 149 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE----------SEEE--E----SST-TTTSSTCEEEE
T ss_pred CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecc----------cCCC--C----Ccc-cccccccceeE
Confidence 455789999 888887774 589999998865321111011110 0000 0 000 00111235567
Q ss_pred EEccCCCceEEEE-cCCeEEEEEccCCc--e--eEEEecCCCccceEEEEEcCCCCEEEEEeC-CCcEEEEEcc
Q 000703 260 TFSPHWRHIIFVT-FPRELVVFDLQYET--P--LFSAALPRGCAKFLDVLADPNNDLLYCAHL-DGKLSIWRRK 327 (1342)
Q Consensus 260 aFSpdg~~ll~~~-~d~~I~iwDl~t~~--~--l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~-DgtI~lW~~~ 327 (1342)
.|+|||+.++... ....|.+|++.... . ...+.++.+.+ ...+++.|||+++|...+ +++|.+++..
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9999999887765 34579999998654 3 23444554433 456889999999988765 6789999877
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.53 E-value=0.00011 Score=86.35 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=110.7
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.|+.++|||. |.+|++....| |.+|+...+..+.++. |. -|..+.|+|.+ .+|.+=+
T Consensus 34 p~~~~~~SP~--------------G~~l~~~~~~~-V~~~~g~~~~~l~~~~---~~--~V~~~~fSP~~---kYL~tw~ 90 (561)
T COG5354 34 PVAYVSESPL--------------GTYLFSEHAAG-VECWGGPSKAKLVRFR---HP--DVKYLDFSPNE---KYLVTWS 90 (561)
T ss_pred chhheeecCc--------------chheehhhccc-eEEccccchhheeeee---cC--CceecccCccc---ceeeeec
Confidence 7889999986 57788877665 8899998887777763 32 59999999988 8888764
Q ss_pred CC---------------CeEEEEECCCCeEEEEEeCCCCc--eE-EEEecCCCCCEEEEEeCCCeEEEEEecCCccccee
Q 000703 157 GP---------------SVLSLYNTTSASCMWKYDASPEY--LS-CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVV 218 (1342)
Q Consensus 157 ~d---------------~~i~lWd~~tg~~i~~~~~~~~~--v~-~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~ 218 (1342)
.. +.+.+||..+|..+..+.+...+ .+ -+.|+- |...+|=. ....+.+.++.+.-
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n~----- 163 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDNI----- 163 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCcc-----
Confidence 33 34899999999988877665444 33 567776 33333222 12345555542210
Q ss_pred eeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc--eEEE-----EcCCeEEEEEccCCceeEEE
Q 000703 219 VKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH--IIFV-----TFPRELVVFDLQYETPLFSA 291 (1342)
Q Consensus 219 ~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~--ll~~-----~~d~~I~iwDl~t~~~l~~~ 291 (1342)
.+. ....+ .+..+..++|||-|.+ +++- ..+..++||.+..+..+.+.
T Consensus 164 -~~~-------p~~~l-----------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 164 -EEH-------PFKNL-----------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred -ccC-------chhhc-----------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 000 00011 1224667788887533 2222 24667778887766666554
Q ss_pred ecCCCccceEEEEEcCCCCEEEEE
Q 000703 292 ALPRGCAKFLDVLADPNNDLLYCA 315 (1342)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1342)
.+-. ..-+++.+-+.|++|.+.
T Consensus 219 ~lfk--~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 219 NLFK--VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEe--ecccEEEEecCCceEEEE
Confidence 4321 122345555677766554
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.52 E-value=8.7e-06 Score=96.96 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=134.8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCC-----------------CCcEEEEEeCCCeE
Q 000703 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKP-----------------DSFVLAAINGPSVL 161 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~-----------------~~~lLas~s~d~~i 161 (1342)
|.+.++|..+.||.++|||+..++....|....+....-.++.|.-.-+ +...|+=+...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4578999999999999999999998888743333222566677742211 11355556678999
Q ss_pred EEEECCCCeEEEEEe--CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000703 162 SLYNTTSASCMWKYD--ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1342)
Q Consensus 162 ~lWd~~tg~~i~~~~--~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1342)
.++++..|+..|++. .|.+.|+++..+. +...|-+++.|+.+..|++.... ...+|.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~----~~~~~~---------------- 141 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV----IIRIWK---------------- 141 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce----eeeeec----------------
Confidence 999999999888876 4567888887776 78888899999999998764311 122221
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCC-----CCEEEE
Q 000703 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN-----NDLLYC 314 (1342)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd-----g~~L~s 314 (1342)
. .+..+.+++++|||+.+++++ ++|.+||+++++.+..++.| .+++..+.|.-+ |+++.+
T Consensus 142 ~-----------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 142 E-----------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred c-----------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeee
Confidence 0 011356679999998877664 89999999999999888755 455656665433 554444
Q ss_pred -EeCCCcEEEEEcc
Q 000703 315 -AHLDGKLSIWRRK 327 (1342)
Q Consensus 315 -~~~DgtI~lW~~~ 327 (1342)
...+.-|.+|-+.
T Consensus 207 sa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 207 SAAAERGITVWVVE 220 (541)
T ss_pred ccccccceeEEEEE
Confidence 4455567778764
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.50 E-value=0.00021 Score=85.11 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=143.9
Q ss_pred CCCceEeCCCC--eEEEEc----CCeEEEEeCCC--cce--eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCC
Q 000703 26 NFGSADLSPSG--LLAFAS----GSSISILDSRS--LQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST 95 (1342)
Q Consensus 26 ~~~a~~~s~~g--llA~gs----~~~V~v~d~~s--~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~ 95 (1342)
|..-++++|++ |++... .+.|..|+... +++ +........ .-..|+.+|+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----------~p~~i~~~~~--------- 97 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-----------SPCHIAVDPD--------- 97 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-----------CEEEEEECTT---------
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-----------CcEEEEEecC---------
Confidence 45678889888 333332 34776665443 333 333321111 3456777766
Q ss_pred CCCCCCcEEEEEe-CCCcEEEEeCCC-CeEEEE---ecCC-------CCCCCCeeEEEEeecCCCCcEEEEE-eCCCeEE
Q 000703 96 EPGSSHLLLAAAD-RHGRVALLDFRL-RSVVLW---IDPD-------PNPKLGIQDLCWIVSKPDSFVLAAI-NGPSVLS 162 (1342)
Q Consensus 96 ~~~p~g~~LASg~-~dG~V~vWD~~~-g~~~~~---l~~~-------~h~~~~V~~l~wsp~~~~~~lLas~-s~d~~i~ 162 (1342)
+.+|+++. .+|.|.++++.. |..... +.+. ........++.|+|++ ++|.+. -+...|.
T Consensus 98 -----g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg---~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 98 -----GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG---RFVYVPDLGADRVY 169 (345)
T ss_dssp -----SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS---SEEEEEETTTTEEE
T ss_pred -----CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC---CEEEEEecCCCEEE
Confidence 46666665 689999999976 543322 2111 0122256789999987 555544 4556899
Q ss_pred EEECCCCe--EE--EEEeCC-CCceEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000703 163 LYNTTSAS--CM--WKYDAS-PEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1342)
Q Consensus 163 lWd~~tg~--~i--~~~~~~-~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1342)
+|+++.+. .. ..+... .....-++|+| |++++-+. -.++.|.++++..... . .+..+.- ..+
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--~-~~~~~~~------~~~-- 237 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--S-LTEIQTI------STL-- 237 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--E-EEEEEEE------ESC--
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--c-eeEEEEe------eec--
Confidence 99987654 21 122222 34567899999 87777554 5578899988763211 0 1111100 000
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEc--cCCce--eEEEecCCCccceEEEEEcCCCCE
Q 000703 237 ELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDL--QYETP--LFSAALPRGCAKFLDVLADPNNDL 311 (1342)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl--~t~~~--l~~~~l~~~~~~~~~v~~~pdg~~ 311 (1342)
|...........+++||||++|.... ..++|.+|++ ++|+. +..+... ...-..+.++|||++
T Consensus 238 ----------~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 238 ----------PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRY 305 (345)
T ss_dssp ----------ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSE
T ss_pred ----------cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCE
Confidence 00000011356779999999876665 5789999999 34443 3333322 233467888999999
Q ss_pred EEEEe-CCCcEEEEEc--cCCc
Q 000703 312 LYCAH-LDGKLSIWRR--KEGE 330 (1342)
Q Consensus 312 L~s~~-~DgtI~lW~~--~~g~ 330 (1342)
|+.+. .+++|.++++ ++|.
T Consensus 306 l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 306 LYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEecCCCeEEEEEEeCCCCc
Confidence 88876 6679999976 4665
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.46 E-value=0.00016 Score=84.86 Aligned_cols=247 Identities=12% Similarity=0.086 Sum_probs=142.9
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCC--CCCCcE
Q 000703 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEP--GSSHLL 103 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~--~p~g~~ 103 (1342)
+..+.|||.| +||+.....|.+|+-.+.-.+..+. |. .|.-+.|||.+.+....+..| .|+-..
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~~------------~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-HP------------DVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred hhheeecCcchheehhhccceEEccccchhheeeee-cC------------CceecccCcccceeeeeccCCccChhhcc
Confidence 6789999999 6776666789999988766544443 55 588898988764422222111 000000
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-EEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC---CC
Q 000703 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA---SP 179 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~-~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~---~~ 179 (1342)
.=- ..+..+.|||..+|..+..+....... -.. -+.|+-++ .++|=.. ...+.|.++ |+..- ...+ ..
T Consensus 102 sp~-~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D---~y~ARvv-~~sl~i~e~-t~n~~-~~p~~~lr~ 173 (561)
T COG5354 102 SPF-TSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDD---KYVARVV-GSSLYIHEI-TDNIE-EHPFKNLRP 173 (561)
T ss_pred CCc-cccCceeEEeccCceeEeeccccCCcc-cccceeeeeecc---hhhhhhc-cCeEEEEec-CCccc-cCchhhccc
Confidence 000 012369999999999998876543332 233 57888876 5555443 357889997 55421 1111 14
Q ss_pred CceEEEEecCC-CCCEEEEE-----eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000703 180 EYLSCIRRNPF-DARHFCVL-----GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1342)
Q Consensus 180 ~~v~~v~fsP~-d~~~la~~-----s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1342)
+.+..++++|- +...||.- +..+.+++|.+.-.. -+..+.+ .++
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~l---------fk~------------------- 223 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNL---------FKV------------------- 223 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeee---------Eee-------------------
Confidence 67889999995 44445554 334666666542110 0001111 000
Q ss_pred cceEEEEEccCCCceEEEE-----------cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEe--CCCc
Q 000703 254 LYMVKFTFSPHWRHIIFVT-----------FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH--LDGK 320 (1342)
Q Consensus 254 ~~v~~~aFSpdg~~ll~~~-----------~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~--~Dgt 320 (1342)
.-.++.+.+.|..++... ...++.|+++.... +.+.. .-.+++.++.+.|+++.++..+ .+.+
T Consensus 224 -~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 224 -SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred -cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceec--cccccceeeeecccCCceeEEecccccc
Confidence 112445566665554443 13468888887332 22211 2247788999999988666544 7788
Q ss_pred EEEEEccC
Q 000703 321 LSIWRRKE 328 (1342)
Q Consensus 321 I~lW~~~~ 328 (1342)
+.+.+.+.
T Consensus 300 ~s~~~lr~ 307 (561)
T COG5354 300 VSVFDLRG 307 (561)
T ss_pred eeeccccc
Confidence 88888774
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.39 E-value=0.033 Score=74.20 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=116.1
Q ss_pred CcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEE----eCCCCe--EEEEecCCCCCCCCeeEEEEeecCCCC
Q 000703 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL----DFRLRS--VVLWIDPDPNPKLGIQDLCWIVSKPDS 149 (1342)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vW----D~~~g~--~~~~l~~~~h~~~~V~~l~wsp~~~~~ 149 (1342)
..|.++.|-++. .-|..+-.+|.|.+. |..+.. .+..+ ..+|.+++||||+
T Consensus 76 ~~ivs~~yl~d~--------------~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v------d~GI~a~~WSPD~--- 132 (928)
T PF04762_consen 76 DKIVSFQYLADS--------------ESLCIALASGDIILVREDPDPDEDEIEIVGSV------DSGILAASWSPDE--- 132 (928)
T ss_pred CcEEEEEeccCC--------------CcEEEEECCceEEEEEccCCCCCceeEEEEEE------cCcEEEEEECCCc---
Confidence 489999998874 457777889999999 665543 33333 2289999999998
Q ss_pred cEEEEEeCCCeEEE----EECCCCeEEEEEeCCC-CceE-------------------------------EEEecCCCCC
Q 000703 150 FVLAAINGPSVLSL----YNTTSASCMWKYDASP-EYLS-------------------------------CIRRNPFDAR 193 (1342)
Q Consensus 150 ~lLas~s~d~~i~l----Wd~~tg~~i~~~~~~~-~~v~-------------------------------~v~fsP~d~~ 193 (1342)
.+||.+.++++|.+ ||+-.-..+..-++.. ..|+ .-..+-.|++
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 88998888888776 3332111111000000 0000 0001100111
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc
Q 000703 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF 273 (1342)
Q Consensus 194 ~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~ 273 (1342)
--.+.-.||..++...-.. ... ..+.++++...+.|+-.. +| .++---.+++-|.|..|++.-.
T Consensus 213 ~~ISWRGDG~yFAVss~~~-~~~-~~R~iRVy~ReG~L~stS----------E~----v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEP-ETG-SRRVIRVYSREGELQSTS----------EP----VDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred eEEEECCCCcEEEEEEEEc-CCC-ceeEEEEECCCceEEecc----------cc----CCCccCCccCCCCCCEEEEEEE
Confidence 1222233444333221100 000 123344443323332111 11 0000113489999977766653
Q ss_pred ---CCeEEEEEccCCceeEEEecC--CCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 000703 274 ---PRELVVFDLQYETPLFSAALP--RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 274 ---d~~I~iwDl~t~~~l~~~~l~--~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1342)
...|.+|.-. |-..+.+.++ .....+..+.+++|++.|+..-.|. |.+|-+.-.
T Consensus 277 ~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 277 LPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred cCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 3567777744 6666777664 3446778999999999999866555 999987644
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=8.5e-05 Score=84.57 Aligned_cols=232 Identities=19% Similarity=0.173 Sum_probs=138.6
Q ss_pred CCceEeCCCC--eEEEEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 27 FGSADLSPSG--LLAFAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 27 ~~a~~~s~~g--llA~gs--~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
...++.+|+. .+||+. +....+||+++++..+.+....++ ++---..|||| |+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---------HFyGHg~fs~d--------------G~ 63 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---------HFYGHGVFSPD--------------GR 63 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---------EEecCEEEcCC--------------CC
Confidence 4578999954 788886 467889999999999888766652 24445677776 46
Q ss_pred EEEEEe-----CCCcEEEEeCC-CCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC------------------C
Q 000703 103 LLAAAD-----RHGRVALLDFR-LRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING------------------P 158 (1342)
Q Consensus 103 ~LASg~-----~dG~V~vWD~~-~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~------------------d 158 (1342)
+|.+.- ..|.|-|||+. +-+.+.+|+. |.- .-..|.|.||+ +.|+++.+ +
T Consensus 64 ~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s--~GI-GPHel~l~pDG---~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 64 LLYTTENDYETGRGVIGVYDAARGYRRIGEFPS--HGI-GPHELLLMPDG---ETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred EEEEeccccCCCcEEEEEEECcCCcEEEeEecC--CCc-ChhhEEEcCCC---CEEEEEcCCCccCcccCceecChhhcC
Confidence 666653 35899999998 4466777643 222 34667899987 55665531 1
Q ss_pred CeEEEEECCCCeEEEEEeC----CCCceEEEEecCCCCCEEEEEeCCCeEEE-EEecCCcccce-eeeeEEEecCcch-h
Q 000703 159 SVLSLYNTTSASCMWKYDA----SPEYLSCIRRNPFDARHFCVLGLKGLLLS-VRVLGQKEDEV-VVKELQIQTDCTE-L 231 (1342)
Q Consensus 159 ~~i~lWd~~tg~~i~~~~~----~~~~v~~v~fsP~d~~~la~~s~dG~v~~-~d~~~~~~~~~-~~k~~~i~~~~~~-l 231 (1342)
..|.+-|..+|+.+-+... +.-.+.-+++++ | |.|.+ ....+...... ..-.+ ..+. +
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~----------G~V~~a~Q~qg~~~~~~PLva~~----~~g~~~ 202 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-D----------GTVAFAMQYQGDPGDAPPLVALH----RRGGAL 202 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecC-C----------CcEEEEEecCCCCCccCCeEEEE----cCCCcc
Confidence 2455567777776655333 223454555554 3 43332 11222110000 00000 0000 1
Q ss_pred hhhhhhhccccCCCCC--CCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCC
Q 000703 232 LKLERELSAGAASLSP--ASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1342)
Q Consensus 232 ~~l~~~~~~~s~~~~p--~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1342)
..+. .| .......|+-+++|+++++.++..+ -.+.+.+||.++++.+...++.. ...++..++
T Consensus 203 ~~~~----------~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D----~cGva~~~~ 268 (305)
T PF07433_consen 203 RLLP----------APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD----ACGVAPTDD 268 (305)
T ss_pred eecc----------CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc----eeeeeecCC
Confidence 0000 11 0123456899999999998876666 46789999999999998777653 334555555
Q ss_pred CCEEEEEeC
Q 000703 309 NDLLYCAHL 317 (1342)
Q Consensus 309 g~~L~s~~~ 317 (1342)
+ +++|.+.
T Consensus 269 ~-f~~ssG~ 276 (305)
T PF07433_consen 269 G-FLVSSGQ 276 (305)
T ss_pred c-eEEeCCC
Confidence 5 5555544
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=0.00019 Score=96.57 Aligned_cols=255 Identities=9% Similarity=0.051 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeee--cC------------CCeEEEEEcCCCcEEEEecCCcccccCcccCEEE
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSV--HN------------GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLV 593 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~g--H~------------~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~ 593 (1342)
++.+.++-+.++.|++||.. |..+..+.+ .. ....+|++.+++..+-++. ...+.|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD--------t~n~~Ir 649 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD--------TENHALR 649 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe--------CCCceEE
Confidence 46688888889999999975 555444432 11 1246788887664332221 1235799
Q ss_pred EEEcCCCceeeeEEe-------ccCC------CCCeEEEEEcC-CCCEEEEEECCCCEEEEeccCCcceeeeccCceEEE
Q 000703 594 VTCLRSGINRAFRVL-------QKPE------RAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVL 659 (1342)
Q Consensus 594 lwD~~tG~~~~l~~l-------~g~h------~~~I~~i~~Sp-dg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l 659 (1342)
++|+.++..+.+..- .+.. -..-..|+|+| +|..+++.+.++.|++||. .++... .+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~-~~g~v~-~~~------ 721 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI-SDGVTR-VFS------ 721 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC-CCCeEE-EEe------
Confidence 999888764333210 0000 11235799999 5666677778899999998 455332 111
Q ss_pred EEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCC-eEEEEecCCCEEEEEecCCe
Q 000703 660 EWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSE-SFAFALANGALGVFEVHGRR 738 (1342)
Q Consensus 660 ~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e-~la~~~~DgtI~lwdv~g~~ 738 (1342)
.++..... ++..... . .......-..+++++ .+++-..+++|++||+++..
T Consensus 722 ---G~G~~~~~--------------------~g~~~~~-~----~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 722 ---GDGYERNL--------------------NGSSGTS-T----SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred ---cCCccccC--------------------CCCcccc-c----cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 11000000 0000000 0 000000000123344 44455567899999986432
Q ss_pred eeccC---CCCCCC--ccccc--------cceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccc----------
Q 000703 739 IRDFR---PKWPSS--SFISS--------DGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTH---------- 793 (1342)
Q Consensus 739 v~d~~---~~~~~~--~~~~~--------~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~~H---------- 793 (1342)
...+. +..+.. .|-.. ...-..|++ +|++.|+-..+++|++||..++...++.+.
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 21000 000000 00000 011235666 788888888999999999998876554332
Q ss_pred ----cccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 794 ----REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 794 ----~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
-.....|+++|+ | ..+++-+.+++|++||+++++
T Consensus 854 ~~a~l~~P~GIavd~d--G----~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGEN--G----RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCC--C----CEEEEECCCCEEEEEECCCCc
Confidence 125778999998 4 445556789999999999876
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.29 E-value=9.3e-06 Score=89.22 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=109.5
Q ss_pred ceEeCCCC-eEE-EEcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 29 SADLSPSG-LLA-FASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 29 a~~~s~~g-llA-~gs~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
++||++.| -++ .-+.+.+.+.+-..+. .+|+++.|.- .....+|+... ..++
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----------E~Wta~f~~~~-------------pnlv 181 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----------EAWTAKFSDKE-------------PNLV 181 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce-----------eeeeeecccCC-------------CceE
Confidence 68999988 333 3356777766655544 4668999997 88889998653 3789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeEEEEEeCCCCceE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDASPEYLS 183 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~~~~~v~ 183 (1342)
.+|++||.+.-||++......+-..+-|+. +|.++.-+|.. +.++++|+.|-.|++||++ =|+++..-.. .+.|+
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~--~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVW 257 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPK--PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVW 257 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCC--CceEEEeccccceeeeehhcccCccccCcc-ccceE
Confidence 999999999999998443322322456776 89999888754 4899999999999999998 5677654433 46788
Q ss_pred EEEecCCCCCEEEEEeC-CCeEEEEEe
Q 000703 184 CIRRNPFDARHFCVLGL-KGLLLSVRV 209 (1342)
Q Consensus 184 ~v~fsP~d~~~la~~s~-dG~v~~~d~ 209 (1342)
-+...|++..++.++++ .|. .+.+.
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G~-ki~~~ 283 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNGA-KILDS 283 (339)
T ss_pred EEEecchhhhHHHHHHHhcCc-eEEEe
Confidence 88999987655544444 443 34443
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.0006 Score=80.65 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=74.1
Q ss_pred EEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEc
Q 000703 183 SCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFS 262 (1342)
Q Consensus 183 ~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFS 262 (1342)
+-+.||| .|..|++--..|.. +| | +. ...++.+- .|| .+--+.||
T Consensus 214 tyv~wSP-~GTYL~t~Hk~GI~-lW---G-------G~---------~f~r~~RF-------------~Hp-~Vq~idfS 258 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQGIA-LW---G-------GE---------SFDRIQRF-------------YHP-GVQFIDFS 258 (698)
T ss_pred eeEEecC-CceEEEEEecccee-ee---c-------Cc---------cHHHHHhc-------------cCC-CceeeecC
Confidence 4689999 88888887666654 44 1 11 11223220 012 34456899
Q ss_pred cCCCceEEEEc-----------CCeEEEEEccCCceeEEEecCCCccceEEE-EEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 263 PHWRHIIFVTF-----------PRELVVFDLQYETPLFSAALPRGCAKFLDV-LADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 263 pdg~~ll~~~~-----------d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v-~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
|.-+.|++-+. ...++|||+.+|...+.++..++......+ -++.|++++|+...| +|.|.+..
T Consensus 259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp 334 (698)
T KOG2314|consen 259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP 334 (698)
T ss_pred CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC
Confidence 99999988873 257999999999999888775555544443 357899999998874 57777754
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.28 E-value=5.1e-06 Score=94.90 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=66.3
Q ss_pred ccccceEEEEee--cCCEEEEEeCCCcEEEEECCC-Cceeee-ccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEE
Q 000703 752 ISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT-GHSSQF-STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827 (1342)
Q Consensus 752 ~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~t-g~~~~l-~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IW 827 (1342)
.||...++.|++ |+++|++++.|..||+=.... -.+..| .||+..|..++.-++ ..|+++|.|+|+++|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLLLSGSGDKTLRLW 220 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------ceeeecCCCCcEEEE
Confidence 488888999999 999999999999999866543 335565 689999999999888 568999999999999
Q ss_pred ECCCCCcc
Q 000703 828 DLDSQDPL 835 (1342)
Q Consensus 828 Dl~t~~~l 835 (1342)
|+.+++++
T Consensus 221 d~~sgk~L 228 (390)
T KOG3914|consen 221 DITSGKLL 228 (390)
T ss_pred ecccCCcc
Confidence 99999854
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.28 E-value=5.3e-05 Score=83.43 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=97.9
Q ss_pred CeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCC-Cc--eeeec
Q 000703 718 ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTT-GH--SSQFS 791 (1342)
Q Consensus 718 e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~DgtI~lWDl~t-g~--~~~l~ 791 (1342)
..+++...+|.+..-+.+...+.. ...|. .|+..+....| +.+.+.+|+.|+.+..||++. +. -+.-.
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~-vq~wk-----~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEK-VQTWK-----VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeee-ccccc-----ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 346777788888744433222221 12333 35545555555 567899999999999999983 32 23346
Q ss_pred cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC-CCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEE
Q 000703 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS-QDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIA 870 (1342)
Q Consensus 792 ~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t-~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~ 870 (1342)
-|...|.+|.-||..+ .+|++|++|..|++||.+. ++++. .+.. ++.|+.+.|+|. ... .|+.+
T Consensus 208 vH~~GV~SI~ss~~~~-----~~I~TGsYDe~i~~~DtRnm~kPl~----~~~v-~GGVWRi~~~p~----~~~-~lL~~ 272 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKP-----TYIATGSYDECIRVLDTRNMGKPLF----KAKV-GGGVWRIKHHPE----IFH-RLLAA 272 (339)
T ss_pred eeecceEEEecCCCCC-----ceEEEeccccceeeeehhcccCccc----cCcc-ccceEEEEecch----hhh-HHHHH
Confidence 7999999999998754 5899999999999999984 44442 2222 367999999997 222 23355
Q ss_pred eCCCcEEEEEccC
Q 000703 871 GADSSFRLIEVNT 883 (1342)
Q Consensus 871 s~DgtIrvWdi~~ 883 (1342)
..-+-++|-++..
T Consensus 273 CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 273 CMHNGAKILDSSD 285 (339)
T ss_pred HHhcCceEEEecc
Confidence 6666678887763
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.27 E-value=0.00013 Score=84.40 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=149.8
Q ss_pred eCCCC-eEEEEcCCeEEEEeCCCcceeE---eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE
Q 000703 32 LSPSG-LLAFASGSSISILDSRSLQLIS---TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1342)
Q Consensus 32 ~s~~g-llA~gs~~~V~v~d~~s~~~~~---~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1342)
.+.|| .|+|-.++.|.++||.+-.+-. -|+..+.. -.+-.|.-++|..+-.. -+|.++|..
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~------k~~k~~~pskyledfa~---------~~Gd~ia~V 338 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKK------KQPKFVNPSKYLEDFAV---------VNGDYIALV 338 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcccccc------ccccccCHHHhhhhhcc---------CCCcEEEEE
Confidence 35678 7999989999999998754321 11111100 00113444444433111 368899988
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCC-eEEEEECCCCeEEEEEeCCCCceEEEE
Q 000703 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPS-VLSLYNTTSASCMWKYDASPEYLSCIR 186 (1342)
Q Consensus 108 ~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~-~i~lWd~~tg~~i~~~~~~~~~v~~v~ 186 (1342)
++ |++-|-+...|-.++. ++.+ .|....+..+. +-++.+..|+ .|-|+|..+|+. .++...-+.|..+.
T Consensus 339 SR-GkaFi~~~~~~~~iqv----~~~~-~VrY~r~~~~~---e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~ 408 (668)
T COG4946 339 SR-GKAFIMRPWDGYSIQV----GKKG-GVRYRRIQVDP---EGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK 408 (668)
T ss_pred ec-CcEEEECCCCCeeEEc----CCCC-ceEEEEEccCC---cceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence 75 6777888776666553 4555 78888877765 4566677777 899999998874 33444467899999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC
Q 000703 187 RNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR 266 (1342)
Q Consensus 187 fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~ 266 (1342)
.+| |+..++++.+...+.++|+..... +... . ....-+..+++||++|
T Consensus 409 vs~-dGK~~vvaNdr~el~vididngnv-----~~id----------------k----------S~~~lItdf~~~~nsr 456 (668)
T COG4946 409 VSP-DGKKVVVANDRFELWVIDIDNGNV-----RLID----------------K----------SEYGLITDFDWHPNSR 456 (668)
T ss_pred EcC-CCcEEEEEcCceEEEEEEecCCCe-----eEec----------------c----------cccceeEEEEEcCCce
Confidence 999 999999999889999988765321 1110 0 0112477889999999
Q ss_pred ceEEEEc----CCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeC
Q 000703 267 HIIFVTF----PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHL 317 (1342)
Q Consensus 267 ~ll~~~~----d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~ 317 (1342)
+++++-- -+.|+|+|.+.++...... +. +.-.+=+|.|||++||-.+.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t--a~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT--AYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecC-Cc--ccccCcccCCCCcEEEEEec
Confidence 9999864 4579999999887654332 21 22223467799999997753
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.23 E-value=0.00061 Score=91.85 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=151.5
Q ss_pred CceEeCCC-C-eEEEEc-CCeEEEEeCCCcceeEeecC-CCCCCCCCCC-----CCCCcEEEEEEecCCCccccCCCCCC
Q 000703 28 GSADLSPS-G-LLAFAS-GSSISILDSRSLQLISTIPI-PPPTSAGSVA-----SLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 28 ~a~~~s~~-g-llA~gs-~~~V~v~d~~s~~~~~~l~~-H~~~~~~~~~-----~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
+.++++++ | +++.-+ ++.|+++|.. ++.+..+.+ ... |+.+ ..-..-..|++.++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~---G~~dG~~~~a~f~~P~GIavd~~------------ 634 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEE---GLRDGSFEDATFNRPQGLAYNAK------------ 634 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCc---CCCCCchhccccCCCcEEEEeCC------------
Confidence 45778764 5 544444 4689999975 555544433 110 1100 00011245666654
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCC---------------CCCCeeEEEEeecCCCCcEEEEEeCCCeEE
Q 000703 99 SSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPN---------------PKLGIQDLCWIVSKPDSFVLAAINGPSVLS 162 (1342)
Q Consensus 99 p~g~~LASg~~-dG~V~vWD~~~g~~~~~l~~~~h---------------~~~~V~~l~wsp~~~~~~lLas~s~d~~i~ 162 (1342)
+..|..++. ++.|+++|..++... ++...|. -. .-.+++|+|++ +.+.++.+.++.|+
T Consensus 635 --gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~--g~LyVad~~~~~I~ 708 (1057)
T PLN02919 635 --KNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLN-SPWDVCFEPVN--EKVYIAMAGQHQIW 708 (1057)
T ss_pred --CCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcC-CCeEEEEecCC--CeEEEEECCCCeEE
Confidence 455656554 578999998776543 3211110 01 23578999854 26778888899999
Q ss_pred EEECCCCeEEEEEeCC---------------CCceEEEEecCCCCCEE-EEEeCCCeEEEEEecCCcccceeeeeEEEec
Q 000703 163 LYNTTSASCMWKYDAS---------------PEYLSCIRRNPFDARHF-CVLGLKGLLLSVRVLGQKEDEVVVKELQIQT 226 (1342)
Q Consensus 163 lWd~~tg~~i~~~~~~---------------~~~v~~v~fsP~d~~~l-a~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~ 226 (1342)
+||..+|... .+.+. -.....++|+| |+.+| ++-+.++.|++||..+... .+....
T Consensus 709 v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~------~~~~gg 780 (1057)
T PLN02919 709 EYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGS------RLLAGG 780 (1057)
T ss_pred EEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcE------EEEEec
Confidence 9999877542 22110 01345789999 77644 4556678999998754211 000000
Q ss_pred Cc---chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCC-------
Q 000703 227 DC---TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRG------- 296 (1342)
Q Consensus 227 ~~---~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~------- 296 (1342)
+. ..+.+.. .. .|....+...+| ..++|+|+|...++-..++.|++||.+++.... +...+.
T Consensus 781 ~~~~~~~l~~fG---~~-dG~g~~~~l~~P---~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~ 852 (1057)
T PLN02919 781 DPTFSDNLFKFG---DH-DGVGSEVLLQHP---LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGK 852 (1057)
T ss_pred ccccCccccccc---CC-CCchhhhhccCC---ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCc
Confidence 00 0000000 00 000000011222 356899999866666789999999999886543 221110
Q ss_pred -----ccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 297 -----CAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 297 -----~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
......++.+++|+++++-..|++|++|+..++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0123467888999988888999999999998775
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.00062 Score=80.54 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=111.6
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.=|-|+|||. |.+|+|=-.-| |.+|--.+-..++.| .|. .|+-+.|||+. ++|+|-+
T Consensus 212 Tetyv~wSP~--------------GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp--~Vq~idfSP~E---kYLVT~s 268 (698)
T KOG2314|consen 212 TETYVRWSPK--------------GTYLVTFHKQG-IALWGGESFDRIQRF---YHP--GVQFIDFSPNE---KYLVTYS 268 (698)
T ss_pred eeeeEEecCC--------------ceEEEEEeccc-eeeecCccHHHHHhc---cCC--CceeeecCCcc---ceEEEec
Confidence 4578999987 57899876666 889987665666665 344 59999999987 8999876
Q ss_pred CC-----------CeEEEEECCCCeEEEEEeCC--CCce-EEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeE
Q 000703 157 GP-----------SVLSLYNTTSASCMWKYDAS--PEYL-SCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKEL 222 (1342)
Q Consensus 157 ~d-----------~~i~lWd~~tg~~i~~~~~~--~~~v-~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~ 222 (1342)
.. ..++|||+.||.....+... +-.. .-+.||. |...+|-...+ .|.+++. + ++
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEt----p------sf 336 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYET----P------SF 336 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEec----C------ce
Confidence 32 57899999999876655431 1122 2567886 77777766654 3445431 1 01
Q ss_pred EEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-----cCCeEEEEEccCCceeEEEecCCCc
Q 000703 223 QIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-----FPRELVVFDLQYETPLFSAALPRGC 297 (1342)
Q Consensus 223 ~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-----~d~~I~iwDl~t~~~l~~~~l~~~~ 297 (1342)
.+ +.. + ......|-.+.|||-+..|++=+ .+-++.|-.+.+++.+++..+..
T Consensus 337 ~l---------ld~---------K---slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-- 393 (698)
T KOG2314|consen 337 ML---------LDK---------K---SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-- 393 (698)
T ss_pred ee---------ecc---------c---ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--
Confidence 10 000 0 01112366778999876666554 24467777777777776655431
Q ss_pred cceEEEEEcCCCCEEE
Q 000703 298 AKFLDVLADPNNDLLY 313 (1342)
Q Consensus 298 ~~~~~v~~~pdg~~L~ 313 (1342)
+.-..+.+=.+|++|.
T Consensus 394 VsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLC 409 (698)
T ss_pred eeccEEEeccCCcEEE
Confidence 2222344446777764
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.00051 Score=83.76 Aligned_cols=190 Identities=6% Similarity=-0.064 Sum_probs=112.3
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR---HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLA 153 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~---dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLa 153 (1342)
.+..-+|||||. ..++-.+. +..|.++|+.+|+....... .+ .+....|+||+. +++.
T Consensus 189 ~~~~p~wSpDG~-------------~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g-~~~~~~~SPDG~--~la~ 249 (419)
T PRK04043 189 LNIFPKWANKEQ-------------TAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QG-MLVVSDVSKDGS--KLLL 249 (419)
T ss_pred CeEeEEECCCCC-------------cEEEEEEccCCCCEEEEEECCCCcEEEEecC---CC-cEEeeEECCCCC--EEEE
Confidence 466789998852 12443322 35688999998876554322 23 456678999872 4555
Q ss_pred EEeC--CCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCC-C--eEEEEEecCCcccceeeeeEEEecCc
Q 000703 154 AING--PSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLK-G--LLLSVRVLGQKEDEVVVKELQIQTDC 228 (1342)
Q Consensus 154 s~s~--d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~d-G--~v~~~d~~~~~~~~~~~k~~~i~~~~ 228 (1342)
+.+. +..|.++|+.+|+. ..++.+........|+| |+++|+..+.. | .|++.|+.+..
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~--------------- 312 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGS--------------- 312 (419)
T ss_pred EEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCC---------------
Confidence 5543 35677789887763 33433232233457999 99999888753 2 45555543211
Q ss_pred chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC---------CeEEEEEccCCceeEEEecCCCccc
Q 000703 229 TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP---------RELVVFDLQYETPLFSAALPRGCAK 299 (1342)
Q Consensus 229 ~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d---------~~I~iwDl~t~~~l~~~~l~~~~~~ 299 (1342)
..++.. ... . ...|||||+.+++.... ..|.+.|++++... .+. .+ ..
T Consensus 313 --~~rlt~-------------~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT--~~-~~ 369 (419)
T PRK04043 313 --VEQVVF-------------HGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT--AN-GV 369 (419)
T ss_pred --eEeCcc-------------CCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC--CC-CC
Confidence 111100 000 1 12799999999999854 37899999988653 222 12 12
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 000703 300 FLDVLADPNNDLLYCAHL-DGKLSIWR 325 (1342)
Q Consensus 300 ~~~v~~~pdg~~L~s~~~-DgtI~lW~ 325 (1342)
.....++|||+.|+-... .+.-.|+-
T Consensus 370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred cCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 224667999997766543 33333443
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.12 E-value=0.0021 Score=77.98 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=113.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-----EEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-----DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~-----~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1342)
+.+|..++.+|.+.-.|..+|+.+-..++.+..+ .+. .+.-.|--.+ ..+..++.++.+.-+|..||+.+|++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG-WFSKNKSALLSGGVTVAG-GKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc-ccccccccccccccEEEC-CEEEEEcCCCEEEEEECCCCCCcccc
Confidence 4577778888999999999998776554432110 000 0000111011 34556777899999999999999998
Q ss_pred eCCCCceEEEEecCC-CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000703 176 DASPEYLSCIRRNPF-DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1342)
Q Consensus 176 ~~~~~~v~~v~fsP~-d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1342)
.... .+.+ +|. .+.++.++..+|.++.+|..... ..|....+.+.+ .+.. ...|
T Consensus 147 ~~~~-~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~------~~W~~~~~~~~~-~~~~-------------~~sP- 201 (394)
T PRK11138 147 KVAG-EALS---RPVVSDGLVLVHTSNGMLQALNESDGA------VKWTVNLDVPSL-TLRG-------------ESAP- 201 (394)
T ss_pred cCCC-ceec---CCEEECCEEEEECCCCEEEEEEccCCC------EeeeecCCCCcc-cccC-------------CCCC-
Confidence 7632 2211 121 23456667778888888864311 112211000000 0000 0011
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc--c---ceEEEEEcC--CCCEEEEEeCCCcEEEEEcc
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC--A---KFLDVLADP--NNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~---~~~~v~~~p--dg~~L~s~~~DgtI~lW~~~ 327 (1342)
++ . +..++.+..++.+..+|.++|+.+......... . .+..+..+| .++.||.++.||.+.-.|.+
T Consensus 202 -~v----~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 202 -AT----A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred -EE----E--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11 1 234666677899999999999887665432110 0 011122233 46678888899999999999
Q ss_pred CCceeee
Q 000703 328 EGEQVHV 334 (1342)
Q Consensus 328 ~g~~~~~ 334 (1342)
+|+.++.
T Consensus 275 tG~~~W~ 281 (394)
T PRK11138 275 SGQIVWK 281 (394)
T ss_pred CCCEEEe
Confidence 9986554
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.10 E-value=0.0019 Score=71.86 Aligned_cols=146 Identities=24% Similarity=0.325 Sum_probs=94.4
Q ss_pred eEeCCCC-eEEEEcCCeEEEEeCCCc--ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEE
Q 000703 30 ADLSPSG-LLAFASGSSISILDSRSL--QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1342)
Q Consensus 30 ~~~s~~g-llA~gs~~~V~v~d~~s~--~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1342)
++.+.+| +||.--+++|.|--.++. ..+....-++++ ++.=..|+|||| +.+||-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~--------~PQWRkl~WSpD--------------~tlLa~ 60 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDP--------NPQWRKLAWSPD--------------CTLLAY 60 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCC--------CchheEEEECCC--------------CcEEEE
Confidence 3557788 899888999998877652 122222223321 236778999987 588999
Q ss_pred EeCCCcEEEEeCCCCeEEEEecC----CC-CCCCCeeEEEEeecCCCC---cEEEEEeCCCeEEEEECCCC-----eEEE
Q 000703 107 ADRHGRVALLDFRLRSVVLWIDP----DP-NPKLGIQDLCWIVSKPDS---FVLAAINGPSVLSLYNTTSA-----SCMW 173 (1342)
Q Consensus 107 g~~dG~V~vWD~~~g~~~~~l~~----~~-h~~~~V~~l~wsp~~~~~---~lLas~s~d~~i~lWd~~tg-----~~i~ 173 (1342)
+...|+|+|.|+.. ..+..++. .+ -+. +|.+|.|....... ..|.+..-.|.++=+-+..| +..+
T Consensus 61 a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~-Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 61 AESTGTIRVFDLMG-SELFVIPPAMSFPGDLSD-AIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred EcCCCeEEEEeccc-ceeEEcCcccccCCcccc-ceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 99999999999854 44444321 11 123 78889887654221 25666767888887776433 2344
Q ss_pred EEeC---CCCceEEEEecCCCCCEEEEEeC
Q 000703 174 KYDA---SPEYLSCIRRNPFDARHFCVLGL 200 (1342)
Q Consensus 174 ~~~~---~~~~v~~v~fsP~d~~~la~~s~ 200 (1342)
.+.+ .+..|.++.++| ..+.|.++|.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~ 167 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHP-KHRLLLVGGC 167 (282)
T ss_pred EEEecccCCCceeEEEEcC-CCCEEEEecc
Confidence 5444 255788999999 6666666654
No 282
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0023 Score=71.48 Aligned_cols=187 Identities=17% Similarity=0.190 Sum_probs=111.3
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEec
Q 000703 109 RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRN 188 (1342)
Q Consensus 109 ~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fs 188 (1342)
.+|+|..||..+|+.+-...+..... ..... ..+++ ..+.+++.++.|..||..+|+.+|++.. .+.+... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~-~~~~~-~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~-~- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIG-GPVAT-AVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA-P- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCS-SEEET-EEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG-E-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCC-Cccce-EEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce-e-
Confidence 37899999999999887765522112 12211 22233 4566668899999999999999999987 3332211 1
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCce
Q 000703 189 PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHI 268 (1342)
Q Consensus 189 P~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~l 268 (1342)
..++.++.++..++.++.+|..... ..|.+.... .|... ......+..++..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~------~~W~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGK------VLWSIYLTS-----------------SPPAG----VRSSSSPAVDGDRL 125 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSC------EEEEEEE-S-----------------SCTCS----TB--SEEEEETTEE
T ss_pred eecccccccccceeeeEecccCCcc------eeeeecccc-----------------ccccc----cccccCceEecCEE
Confidence 1145677777778889888843311 112210000 00000 01111233336677
Q ss_pred EEEEcCCeEEEEEccCCceeEEEecCCCc--cce-------EEEEEcCCCCEEEEEeCCCc-EEEEEccCCceee
Q 000703 269 IFVTFPRELVVFDLQYETPLFSAALPRGC--AKF-------LDVLADPNNDLLYCAHLDGK-LSIWRRKEGEQVH 333 (1342)
Q Consensus 269 l~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~~~-------~~v~~~pdg~~L~s~~~Dgt-I~lW~~~~g~~~~ 333 (1342)
+++..++.|..+|+++|+.+......... .++ ..+.. .++ .++.++.+|. +.+ |.++|+.++
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence 77777999999999999999888764322 111 12221 234 8888888886 565 999887544
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.09 E-value=0.00086 Score=74.86 Aligned_cols=231 Identities=17% Similarity=0.128 Sum_probs=132.4
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe
Q 000703 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS 122 (1342)
Q Consensus 43 ~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~ 122 (1342)
.+.|..+|+++|+.+-...--++. ....+... +++.+|.+++.++.+..||..+|+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~---------~~~~~~~~---------------~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI---------GGPVATAV---------------PDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC---------SSEEETEE---------------EETTEEEEEETTSEEEEEETTTSE
T ss_pred CCEEEEEECCCCCEEEEEECCCCC---------CCccceEE---------------EeCCEEEEEcCCCEEEEEECCCCC
Confidence 467889999999987665431100 01111111 124567777899999999999999
Q ss_pred EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE-eCCCC--c-eEEEEecCCCCCEEEEE
Q 000703 123 VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY-DASPE--Y-LSCIRRNPFDARHFCVL 198 (1342)
Q Consensus 123 ~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~-~~~~~--~-v~~v~fsP~d~~~la~~ 198 (1342)
.+-.++..+... ... ...+ ..+..+..++.|..+|+.+|+.+|+. ....+ . ........ ++..+.++
T Consensus 58 ~~W~~~~~~~~~----~~~-~~~~---~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (238)
T PF13360_consen 58 VLWRFDLPGPIS----GAP-VVDG---GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVG 128 (238)
T ss_dssp EEEEEECSSCGG----SGE-EEET---TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEE
T ss_pred EEEEeecccccc----cee-eecc---cccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEE
Confidence 887776533211 111 1222 34555667889999999999999994 43211 1 11222222 46778888
Q ss_pred eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEE
Q 000703 199 GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELV 278 (1342)
Q Consensus 199 s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~ 278 (1342)
..+|.|+.+|..... ...++.+ .. .+..... .........+.+. ++ .+..+..++.+.
T Consensus 129 ~~~g~l~~~d~~tG~----~~w~~~~--~~---~~~~~~~-----------~~~~~~~~~~~~~-~~-~v~~~~~~g~~~ 186 (238)
T PF13360_consen 129 TSSGKLVALDPKTGK----LLWKYPV--GE---PRGSSPI-----------SSFSDINGSPVIS-DG-RVYVSSGDGRVV 186 (238)
T ss_dssp ETCSEEEEEETTTTE----EEEEEES--ST---T-SS--E-----------EEETTEEEEEECC-TT-EEEEECCTSSEE
T ss_pred eccCcEEEEecCCCc----EEEEeec--CC---CCCCcce-----------eeecccccceEEE-CC-EEEEEcCCCeEE
Confidence 878999998864321 1111211 00 0000000 0000001222333 34 566666677544
Q ss_pred EEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceee
Q 000703 279 VFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVH 333 (1342)
Q Consensus 279 iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~ 333 (1342)
-+|+++++.+.... ..+ ... .+..++..||+++.|+.|..||+++|+.++
T Consensus 187 ~~d~~tg~~~w~~~-~~~---~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 187 AVDLATGEKLWSKP-ISG---IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEec-CCC---ccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 44999999765433 211 111 134678899999999999999999998655
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.08 E-value=5.7e-05 Score=91.21 Aligned_cols=207 Identities=14% Similarity=0.180 Sum_probs=131.0
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCC-cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 26 NFGSADLSPSG-LLAFASGSSISILDSRS-LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~s-~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.++++..+|.| =+|.++.--..|.|... +..-.-| .|.. ...|--++|+|... ....
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l-~h~t---------pw~vad~qws~h~a-----------~~~w 84 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWL-HHIT---------PWQVADVQWSPHPA-----------KPYW 84 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceee-eccC---------cchhcceecccCCC-----------Ccee
Confidence 47899999998 57777765566666543 2222222 2332 23788999999753 2455
Q ss_pred EEEEeCCCcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe-EEEEEeCCCCc
Q 000703 104 LAAADRHGRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS-CMWKYDASPEY 181 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~-~i~~~~~~~~~ 181 (1342)
++|-+ ..+.+||++... .....|-+.||+. +|+++-|.|..+ ++||+++-|..+..||+++.. ++.....-...
T Consensus 85 iVsts-~qkaiiwnlA~ss~~aIef~lhghsr-aitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 85 IVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSR-AITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred EEecC-cchhhhhhhhcCCccceEEEEecCcc-ceeccccCCCCC--cceeeccccccceeeeccCCCcceeeeeccccc
Confidence 66665 455669998543 2233454689998 999999999774 799999999999999998764 33333222344
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000703 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aF 261 (1342)
-+.|.|+--|+..+|. ++...|++||.+-.+.. +..++++.+. +..+.|
T Consensus 161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p---------------l~s~K~~vs~---------------vn~~~f 209 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP---------------LCSLKGHVSS---------------VNSIDF 209 (1081)
T ss_pred CceeeecccCcchhhh-ccCCceEEEeccCCCcc---------------eEEeccccee---------------eehHHH
Confidence 5567888766665554 56678999997553221 1112221111 222233
Q ss_pred ccC-CCceEEEEcCCeEEEEEccCCcee
Q 000703 262 SPH-WRHIIFVTFPRELVVFDLQYETPL 288 (1342)
Q Consensus 262 Spd-g~~ll~~~~d~~I~iwDl~t~~~l 288 (1342)
..- -..+++.+.|++|..||-+..+..
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccc
Confidence 221 124567778999999999866544
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.02 E-value=0.00011 Score=82.40 Aligned_cols=244 Identities=16% Similarity=0.215 Sum_probs=147.4
Q ss_pred EEEEeeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCEEEEEEcCC-CceeeeEEeccCCCCCeEEEEEcCCCCEE
Q 000703 551 VTASFSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSGRYL 628 (1342)
Q Consensus 551 ~~~~l~gH~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~g~h~~~I~~i~~Spdg~~L 628 (1342)
+++.++||.+.|++....| +..+++.+.| -+++||--++ |+ .-+.+...-..+++++.++++-+.|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~d----------rtvrv~lkrds~q--~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSED----------RTVRVWLKRDSGQ--YWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEcccc----------ceeeeEEeccccc--cCchhhhhCCCCceEeeeeccceEE
Confidence 3456678888887765544 3356665554 3889987543 43 2222221134678999999999999
Q ss_pred EEEECCCCEEEEeccCCc---ceeeecc---CceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCC
Q 000703 629 LILFRDAPVEVWAMTKNP---IMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSS 702 (1342)
Q Consensus 629 as~s~D~tIkvWDl~kt~---~~l~~l~---~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~ 702 (1342)
++|...+++-=+.+...- ..++... ..+..+-|+.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~--------------------------------------- 124 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL--------------------------------------- 124 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC---------------------------------------
Confidence 999999988777662111 1112111 1223333331
Q ss_pred CCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe--cCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEE
Q 000703 703 DSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWW 780 (1342)
Q Consensus 703 ~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv--~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lW 780 (1342)
+.+.+++.+.|..+ .|.. .++++..+...- .-+++.+|-.+...|+..|.|.+-
T Consensus 125 -------------~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~----------~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 125 -------------THEWVLSTGKDKQF-AWHCTESGNRLGGYNFET----------PASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred -------------CceeEEEeccccce-EEEeeccCCcccceEeec----------cCCCCceeeEEEEecccccceEEE
Confidence 13455555555544 3443 233332110000 001111221234445555655554
Q ss_pred ECCC---CceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCCCCcEEEEEEeCC
Q 000703 781 DVTT---GHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1342)
Q Consensus 781 Dl~t---g~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~~~~V~~l~ws~d 857 (1342)
.+.- +.+.++.+|.+.|++++|.|. . ++|.++..|..+.+||+-.+......+ ++|. ..|..+...+.
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~--~----~~LfSg~~d~~vi~wdigg~~g~~~el-~gh~--~kV~~l~~~~~ 251 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPG--Q----RLLFSGASDHSVIMWDIGGRKGTAYEL-QGHN--DKVQALSYAQH 251 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCC--C----cEEEeccccCceEEEeccCCcceeeee-ccch--hhhhhhhhhhh
Confidence 4432 336788999999999999998 3 678899999999999997665444444 6776 56777766654
Q ss_pred CCCCCCCeEEEEEeCCCcEEEEEccCC
Q 000703 858 RTDKNDPLVLCIAGADSSFRLIEVNTS 884 (1342)
Q Consensus 858 ~~~~g~~~~L~s~s~DgtIrvWdi~~~ 884 (1342)
...|.|++.||.|.+|+++..
T Consensus 252 ------t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 252 ------TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ------heeeeeccCCCeEEEEeccce
Confidence 226789999999999998743
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.99 E-value=4.7e-05 Score=99.63 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=149.6
Q ss_pred CCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 25 NNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
+||.++.=+|.. ...+|+ +++|++|.-..++.+.++.--.. +.|+.++|+.+ |.
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----------s~vtr~~f~~q--------------Gn 2264 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----------SRVTRSRFNHQ--------------GN 2264 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc----------chhhhhhhccc--------------CC
Confidence 457777888876 566664 68999999888888777652221 38999999977 46
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe---CCCeEEEEECCCCeEEE-EEeCC
Q 000703 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN---GPSVLSLYNTTSASCMW-KYDAS 178 (1342)
Q Consensus 103 ~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s---~d~~i~lWd~~tg~~i~-~~~~~ 178 (1342)
....++.||.+-+|.+.. +.... .+-|.+ +..+..|.. .++++.+ .++.+.+||+--....| ..+.|
T Consensus 2265 k~~i~d~dg~l~l~q~~p-k~~~s--~qchnk-~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASP-KPYTS--WQCHNK-ALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred ceeeeccCCceeecccCC-cceec--cccCCc-cccceeeee-----hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 688889999999999873 33222 366778 889999886 3456653 45789999976332211 22677
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.+..+++++-| .-..|.+||.+|.|.+||+.-. ++..+|.+
T Consensus 2336 ~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqr--------------------ql~h~~~~------------------ 2376 (2439)
T KOG1064|consen 2336 DGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQR--------------------QLRHTFQA------------------ 2376 (2439)
T ss_pred CCCceEEEEcC-cceEEEecCCcCcEEEeehHHH--------------------HHHHHhhh------------------
Confidence 88999999999 8889999999999999996321 12222210
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceE-----EEEEcCCCCEEEEEeCCCc
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFL-----DVLADPNNDLLYCAHLDGK 320 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~-----~v~~~pdg~~L~s~~~Dgt 320 (1342)
.. ....+++++..|.|+||++..-..+.+++.+.....|. ++.. -....|++++.||+
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee-ccCceEEEecCCCC
Confidence 11 12356677788999999999887887776543333331 1111 23345666666664
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.99 E-value=7e-05 Score=83.98 Aligned_cols=250 Identities=11% Similarity=0.128 Sum_probs=158.7
Q ss_pred EEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEe-CCCCcEEEEee-ecCCCeEEEEEcC
Q 000703 492 SLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVD-VSANAVTASFS-VHNGTVRGLRWLG 569 (1342)
Q Consensus 492 ~l~g~l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWD-l~tg~~~~~l~-gH~~~V~~l~fs~ 569 (1342)
.+.-.+.||...|+....-| ..+-+.+.+.|.++|||- ...|+.-..+. .-..+++++++..
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~----------------~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIP----------------KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS 78 (404)
T ss_pred hhhhhhcCchhhhhhheecc----------------CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec
Confidence 34445677888888776666 235578899999999996 33443322221 1246889999999
Q ss_pred CCcEEEEecCCcccccCcccCEEEEEEcCC--CceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcc
Q 000703 570 NSRLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI 647 (1342)
Q Consensus 570 d~~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~ 647 (1342)
..+.+..+.+. +++.-+-+.. .+....|... .|..+|.++-|+-.-.++++.+.|+.+ .|-..+.+.
T Consensus 79 e~~~L~vg~~n---------gtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~ 147 (404)
T KOG1409|consen 79 ESRRLYVGQDN---------GTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGN 147 (404)
T ss_pred cceEEEEEEec---------ceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccce-EEEeeccCC
Confidence 98877777653 1222222110 1111333322 388999999999999999999999886 476645554
Q ss_pred eeeeccCceEEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCC
Q 000703 648 MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG 727 (1342)
Q Consensus 648 ~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~Dg 727 (1342)
.+..+ .-..+ +..+.. +-.....+...|
T Consensus 148 ~lg~Y----~~~~~--~t~~~~----------------------------------------------d~~~~fvGd~~g 175 (404)
T KOG1409|consen 148 RLGGY----NFETP--ASALQF----------------------------------------------DALYAFVGDHSG 175 (404)
T ss_pred cccce----Eeecc--CCCCce----------------------------------------------eeEEEEeccccc
Confidence 43211 10111 110000 001112344455
Q ss_pred CEEEEEecCCeeeccCCCCCCCccccccceEEEEeec--CCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEe
Q 000703 728 ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFS 803 (1342)
Q Consensus 728 tI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~d--g~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fS 803 (1342)
.|....+..+.+..+ . .|.+|.+.+.+++|| ...|.+|..|..|.+||+..++ ...+.+|...|..+...
T Consensus 176 qvt~lr~~~~~~~~i-~-----~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLI-T-----TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ceEEEEEeecCCceE-E-----EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 555544432222110 0 133688899999994 4589999999999999997654 56789999999999877
Q ss_pred cCCCCCCCCCEEEEEECCCeEEEEECCCC
Q 000703 804 PVVPGDRSRGRIAVLFHDNTFSVFDLDSQ 832 (1342)
Q Consensus 804 Pd~~g~~~~~~Las~s~DgtI~IWDl~t~ 832 (1342)
+.. +++.+++.||.|.+||.+..
T Consensus 250 ~~t------~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHT------RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhh------eeeeeccCCCeEEEEeccce
Confidence 762 67999999999999998653
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.044 Score=62.98 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=115.6
Q ss_pred CCcEEEEeCCCCeE-EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC---CCeEEEEECC--CCeEE--EEEeCCCCc
Q 000703 110 HGRVALLDFRLRSV-VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING---PSVLSLYNTT--SASCM--WKYDASPEY 181 (1342)
Q Consensus 110 dG~V~vWD~~~g~~-~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~---d~~i~lWd~~--tg~~i--~~~~~~~~~ 181 (1342)
++-|.+|++.+.+- +..+..-.... .++-|+|+|++ +.|-++.. ++.|.-+.++ +|+.- -.......+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~-nptyl~~~~~~---~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELG-NPTYLAVNPDQ---RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccC-CCceEEECCCC---CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 56799999863321 12111223344 68899999987 67777754 4677766555 46542 222221233
Q ss_pred eEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 182 LSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 182 v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
...+++++ +++.|+++ -..|.|.++-+..++.-....... . + +.. .|.+.+...++-...
T Consensus 91 p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~------------~-h-~g~----~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 91 PCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV------------K-H-TGS----GPHERQESPHVHSAN 151 (346)
T ss_pred CeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeee------------e-c-CCC----CCCccccCCccceee
Confidence 47899999 88888776 446888876543321100001111 0 0 000 011111112344558
Q ss_pred EccCCCceEEEEc-CCeEEEEEccCCceeEEE--ecCCCccceEEEEEcCCCCEEEEEe-CCCcEEEEEccC
Q 000703 261 FSPHWRHIIFVTF-PRELVVFDLQYETPLFSA--ALPRGCAKFLDVLADPNNDLLYCAH-LDGKLSIWRRKE 328 (1342)
Q Consensus 261 FSpdg~~ll~~~~-d~~I~iwDl~t~~~l~~~--~l~~~~~~~~~v~~~pdg~~L~s~~-~DgtI~lW~~~~ 328 (1342)
|.||++.+++... --.|.+||++.|.....- .+..| +.-.-++|.|++++.|+.. .+++|.+|....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9999999988863 345889999988653221 12222 3445689999999999866 589999999865
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.92 E-value=2.3e-05 Score=61.48 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=35.5
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe
Q 000703 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD 117 (1342)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD 117 (1342)
++++++|.+|.. .|++|+|+|+ +.+||||+.|++|+|||
T Consensus 1 g~~~~~~~~h~~-----------~i~~i~~~~~--------------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-----------SINSIAWSPD--------------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-----------SEEEEEEETT--------------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-----------cEEEEEEecc--------------cccceeeCCCCEEEEEC
Confidence 467889999998 9999999986 47899999999999998
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.91 E-value=3.1e-05 Score=88.71 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=94.5
Q ss_pred cCCCCCCCCCCceEeCCCCeEEEEcC--CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCC
Q 000703 18 LPGPPSRNNFGSADLSPSGLLAFASG--SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST 95 (1342)
Q Consensus 18 lpg~~~~~~~~a~~~s~~gllA~gs~--~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~ 95 (1342)
.+++-.+.....+..+...+++-..+ ..+.+|.+..+... -+-||-. -|+.|+||||
T Consensus 104 ~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvS-----------ml~dVavS~D--------- 162 (390)
T KOG3914|consen 104 SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVS-----------MLLDVAVSPD--------- 162 (390)
T ss_pred eecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhh-----------hhheeeecCC---------
Confidence 55544444444555555556665544 35567776654443 3458987 8999999987
Q ss_pred CCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE
Q 000703 96 EPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1342)
Q Consensus 96 ~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1342)
++++.++++|++|+|=.+..--.+..| .-||+. =|..++..++ +.|+++++|++|++||..+|+++.++
T Consensus 163 -----~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~e-FVS~isl~~~----~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 163 -----DQFIITADRDEKIRVSRYPATFVIESF-CLGHKE-FVSTISLTDN----YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -----CCEEEEecCCceEEEEecCcccchhhh-ccccHh-heeeeeeccC----ceeeecCCCCcEEEEecccCCccccc
Confidence 478999999999999888665556665 358988 7999998764 57999999999999999999987655
Q ss_pred eC
Q 000703 176 DA 177 (1342)
Q Consensus 176 ~~ 177 (1342)
+.
T Consensus 232 dl 233 (390)
T KOG3914|consen 232 DL 233 (390)
T ss_pred ch
Confidence 44
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.90 E-value=0.022 Score=64.28 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=135.9
Q ss_pred ceEeCC-CC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEe-cCCCccccCCCCCCCCCcEE
Q 000703 29 SADLSP-SG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWI-PITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 29 a~~~s~-~g-llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s-p~~~~~~~~s~~~~p~g~~L 104 (1342)
+..|.+ +| |+... .++.|..||+.+++... +..+ ....+++. ++ | .|
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-------------~~~G~~~~~~~--------------g-~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-------------GPNGMAFDRPD--------------G-RL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-------------SEEEEEEECTT--------------S-EE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-------------CCceEEEEccC--------------C-EE
Confidence 567887 66 55555 36789999998876532 2211 24456666 43 3 45
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecC--CCCCCCCeeEEEEeecCCCCcEEEEEeCC--------CeEEEEECCCCeEEEE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDP--DPNPKLGIQDLCWIVSKPDSFVLAAINGP--------SVLSLYNTTSASCMWK 174 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~--~~h~~~~V~~l~wsp~~~~~~lLas~s~d--------~~i~lWd~~tg~~i~~ 174 (1342)
..++.++ +.+.|..+++....+.. ..+.....+++++.+++ ++.++.... +.|..++.. |+....
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G---~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG---NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC---CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 5555555 45559999865544433 22122268999999987 666665533 456677776 554332
Q ss_pred EeCCCCceEEEEecCCCCCEEE-EEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000703 175 YDASPEYLSCIRRNPFDARHFC-VLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1342)
Q Consensus 175 ~~~~~~~v~~v~fsP~d~~~la-~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1342)
... -...+.++|+| |++.|. +-+..+.|+.+++..... ....++..+. +. ...
T Consensus 130 ~~~-~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~~~~~--------~~---------------~~~ 183 (246)
T PF08450_consen 130 ADG-LGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGG-ELSNRRVFID--------FP---------------GGP 183 (246)
T ss_dssp EEE-ESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTC-CEEEEEEEEE---------S---------------SSS
T ss_pred ecC-cccccceEECC-cchheeecccccceeEEEecccccc-ceeeeeeEEE--------cC---------------CCC
Confidence 222 34567999999 888765 556778888888754221 0111111110 00 001
Q ss_pred cceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEE-cCCCCEEEEEe
Q 000703 254 LYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLA-DPNNDLLYCAH 316 (1342)
Q Consensus 254 ~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~ 316 (1342)
...-.+++..+|+-.++.-..+.|.++|.+ |+.+..+.++. .....++| .+|.+.||..+
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 124567899999765555578999999998 99998888762 35567777 57877776543
No 292
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=97.89 E-value=5.9e-05 Score=87.03 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCC----hh--hhHHHHhcC
Q 000703 1119 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRS----LS--GTHLLCAVG 1192 (1342)
Q Consensus 1119 ~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~----~~--gv~~~~~~g 1192 (1342)
+.++|..|++++||++.|+.. .|.+|| +||+..++++|+.+++......+..++- .. .+-+-+..|
T Consensus 2 I~~~Ll~G~~~~Av~~al~~~-----~wa~AL---lLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g 73 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALDNG-----LWAHAL---LLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSG 73 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT------HHHHH---HHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHCC-----ChHHHH---HHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcC
Confidence 578999999999999999999 888888 9999999999999999888887765553 12 233345679
Q ss_pred chHHHHHHhhcc------------CcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHH
Q 000703 1193 RYQEACSQLQDA------------GCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQ 1255 (1342)
Q Consensus 1193 ~~~~a~~~l~~~------------~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~ 1255 (1342)
+..+++.-|+.. +.|++.+.+.-++.+.++. ..|...++.|.+.+ +...|..||+++|...
T Consensus 74 ~~~~~v~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~-~~l~~LGd~L~~~g-~~~aA~iCYllag~~~ 146 (284)
T PF12931_consen 74 NSPEAVDELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDS-QALCALGDRLWQRG-RVEAAHICYLLAGNPL 146 (284)
T ss_dssp -HHHHHHHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS--TT--HHHHHHHTT--HHHHHHHHHHTT---
T ss_pred CcHHHHHHhccccccccccccchhcCHHHHHHHHHhCCCcccH-HHHHHHHHHHHhCC-CcchhHHHHhHcCCcc
Confidence 999999988765 4899999999999777654 66777999997654 4689999999998654
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0021 Score=78.40 Aligned_cols=109 Identities=2% Similarity=-0.118 Sum_probs=68.1
Q ss_pred CCC-EEEEEeC---CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCcee
Q 000703 528 AVP-LVALGTQ---SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINR 603 (1342)
Q Consensus 528 ~~~-llAsGs~---DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~ 603 (1342)
+|+ +++..+. +..|.++|+.+|+..... ...+.+....|+|||+.+.+..+. .| +..|.++|+.+|..+
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~----~g--~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAP----KG--QPDIYLYDTNTKTLT 270 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEcc----CC--CcEEEEEECCCCcEE
Confidence 565 4664433 356999999988764433 344556678899999766665542 11 457999999888754
Q ss_pred eeEEeccCCCCCeEEEEEcCCCCEEEEEEC-CC--CEEEEeccCCcce
Q 000703 604 AFRVLQKPERAPIRALRASSSGRYLLILFR-DA--PVEVWAMTKNPIM 648 (1342)
Q Consensus 604 ~l~~l~g~h~~~I~~i~~Spdg~~Las~s~-D~--tIkvWDl~kt~~~ 648 (1342)
++.. +........|||||+.|+-.+. .+ .|.+.|+ .++..
T Consensus 271 ~LT~----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl-~~g~~ 313 (419)
T PRK04043 271 QITN----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL-NSGSV 313 (419)
T ss_pred Eccc----CCCccCccEECCCCCEEEEEECCCCCceEEEEEC-CCCCe
Confidence 4432 1112234579999998876653 34 3555566 45443
No 294
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.87 E-value=4e-05 Score=100.18 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=135.3
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
+|...+-+||+.||.|++|....++.+..+...|. . .|+.+.|+..| .....+.+||.|.+|.+. .++......
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s-~vtr~~f~~qG---nk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-S-RVTRSRFNHQG---NKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-c-hhhhhhhcccC---CceeeeccCCceeecccC-Ccceecccc
Confidence 57788899999999999999988888877755555 4 79999999887 566778889999999985 555555555
Q ss_pred CCCceEEEEecCCCCCEEEEEe---CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000703 178 SPEYLSCIRRNPFDARHFCVLG---LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1342)
Q Consensus 178 ~~~~v~~v~fsP~d~~~la~~s---~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1342)
|....+.++|=- ..+++++ .++.+.+||-.-. .....|. ..|..
T Consensus 2291 hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~------~~~s~v~------------------------~~H~~ 2337 (2439)
T KOG1064|consen 2291 HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLP------PMNSLVH------------------------TCHDG 2337 (2439)
T ss_pred CCccccceeeee---hhhhccccCCCCCcccchhcccC------cccceee------------------------eecCC
Confidence 566677777743 5566653 3578888874221 1112211 11222
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
....++|-|.-..+++++-+|+|.|||+.-.+.++.+.- + . -+.++++++..|.|+||+..+-..++.
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~--~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------L--D-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------h--h-hhheeeccCcccceEEEEccccchhhc
Confidence 344569999999999999999999999998877654431 1 2 467899999999999999875443444
Q ss_pred E
Q 000703 335 M 335 (1342)
Q Consensus 335 ~ 335 (1342)
+
T Consensus 2406 ~ 2406 (2439)
T KOG1064|consen 2406 F 2406 (2439)
T ss_pred C
Confidence 3
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=3e-05 Score=90.32 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=127.4
Q ss_pred cEEEEEeCCCcEEEEeCCC-----CeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE-
Q 000703 102 LLLAAADRHGRVALLDFRL-----RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY- 175 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~-----g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~- 175 (1342)
.-++|++.|.+|++|.++. |..-..|.++.|.+ +|.++.|..+- +.++++ |+.|.+||.--|+++..+
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-~i~~igfL~~l---r~i~Sc--D~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-PIHDIGFLADL---RSIASC--DGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccC-cccceeeeecc---ceeeec--cCcceeecccccchhHhhh
Confidence 4588999999999999853 22334555789999 99999999875 677766 789999998878776432
Q ss_pred eCC-CCceEEEEecCC-CCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcC
Q 000703 176 DAS-PEYLSCIRRNPF-DARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLF 252 (1342)
Q Consensus 176 ~~~-~~~v~~v~fsP~-d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~ 252 (1342)
..+ .+.+.-+..-|. |...+.++ +...+|+.+|.+.-.. .-++.+. . +|. .+
T Consensus 822 dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~----~~E~kVc----------n---------a~~-Pn- 876 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW----TCELKVC----------N---------APG-PN- 876 (1034)
T ss_pred cCcccCCCceeEecccCcchheeeeccchhhheeeecccccc----eeeEEec----------c---------CCC-Cc-
Confidence 121 122222333342 33333333 5678888887543111 1222210 0 111 01
Q ss_pred ccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEE-EEccCCc
Q 000703 253 PLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSI-WRRKEGE 330 (1342)
Q Consensus 253 ~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~l-W~~~~g~ 330 (1342)
..+..++.-|.|..++.+...|.|.+.|..+|+.+....- .. -...+++ .|....|+....|.++.+ |..-.|.
T Consensus 877 -a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-me-cdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 877 -ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP-ME-CDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred -hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc-cc-chhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 1244558889999999999999999999999998865531 11 1233333 466778999999999999 9887665
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.85 E-value=0.00033 Score=77.37 Aligned_cols=255 Identities=15% Similarity=0.231 Sum_probs=147.1
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEeeecC------------CCeEE
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-----VTASFSVHN------------GTVRG 564 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-----~~~~l~gH~------------~~V~~ 564 (1342)
..||+|-|.- .|.+||+|...|.|.++.-+... ...+|++|. ..|..
T Consensus 27 d~ItaVefd~----------------tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~ 90 (460)
T COG5170 27 DKITAVEFDE----------------TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINA 90 (460)
T ss_pred ceeeEEEecc----------------ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhh
Confidence 4578888765 47899999999999999865322 233566664 26888
Q ss_pred EEEcCCC---cEEEEecCCcccccCcccCEEEEEEcCCCce---------------------------------------
Q 000703 565 LRWLGNS---RLVSFSYSQVNEKSGGYINRLVVTCLRSGIN--------------------------------------- 602 (1342)
Q Consensus 565 l~fs~d~---~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~--------------------------------------- 602 (1342)
|+|..++ .++...- +.+|++|.+.....
T Consensus 91 I~w~~~t~r~hFLlstN----------dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia 160 (460)
T COG5170 91 IEWFDDTGRNHFLLSTN----------DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA 160 (460)
T ss_pred eeeecCCCcceEEEecC----------CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE
Confidence 9997654 4554322 34899998743200
Q ss_pred -eeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCceEEEEEcCCCCCCCCCCCCCCccccc
Q 000703 603 -RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLS 681 (1342)
Q Consensus 603 -~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~l~wsp~~~~~~~~~~~~k~~~~~ 681 (1342)
++-|.....|.--|.+|.|..|...++++ .|=.|.+|++.... +.|+.+..-|.. ..
T Consensus 161 a~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D-------~sFnIVDiKP~n-me------------- 218 (460)
T COG5170 161 AKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID-------GSFNIVDIKPHN-ME------------- 218 (460)
T ss_pred eccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccC-------CceEEEeccCcc-HH-------------
Confidence 01111112355668899999998888865 67789999983111 122222221110 00
Q ss_pred cCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCC-----CCC---Ccccc
Q 000703 682 SKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPK-----WPS---SSFIS 753 (1342)
Q Consensus 682 ~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~-----~~~---~~~~~ 753 (1342)
++....++ .+ + ......+|...+..|+|++-|++...+-+-..+ ..+ .-|.+
T Consensus 219 -----------eLteVItS----ae----F-hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e 278 (460)
T COG5170 219 -----------ELTEVITS----AE----F-HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE 278 (460)
T ss_pred -----------HHHHHHhh----cc----c-CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH
Confidence 00000000 00 0 001134677778889999999864322110000 000 01223
Q ss_pred ccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeecccc------------ccE---EEEEEecCCCCCCCCCE
Q 000703 754 SDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHR------------EGI---RRIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 754 ~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~------------~~V---~~v~fSPd~~g~~~~~~ 814 (1342)
...+|..+-| .|+++++-+. -+|++||++..+ +.+++-|. ..| ..+.||.| . +.
T Consensus 279 ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd--~----~~ 351 (460)
T COG5170 279 IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGD--D----KH 351 (460)
T ss_pred HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCC--c----cc
Confidence 4456777888 6777777544 689999998754 56665553 233 24778876 2 56
Q ss_pred EEEEECCCeEEEEECCC
Q 000703 815 IAVLFHDNTFSVFDLDS 831 (1342)
Q Consensus 815 Las~s~DgtI~IWDl~t 831 (1342)
++++++.+.+.|+-+.+
T Consensus 352 v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 352 VLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccccccccceeeecccc
Confidence 88888888887775433
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.84 E-value=9.4e-05 Score=89.39 Aligned_cols=240 Identities=15% Similarity=0.179 Sum_probs=144.1
Q ss_pred CCEEEEEeCCCcEEEEeCC---CCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeee
Q 000703 529 VPLVALGTQSGAVDVVDVS---ANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~---tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1342)
.++-++.+....-.+|++. +..+..-+.||+.+|+++.|.+...-|+.-. ..+-.+..||+++-+ +++
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc--------svdt~vh~wd~rSp~-~p~ 151 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC--------SVDTYVHAWDMRSPH-RPF 151 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec--------cccccceeeeccCCC-cce
Confidence 4444555566667799985 3345556789999999999999886554322 234478999998754 344
Q ss_pred EEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCceEE---EEEcCCCCCCCCCCCCCCcccccc
Q 000703 606 RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTV---LEWTLPTVPWPSQTGPSRQSSLSS 682 (1342)
Q Consensus 606 ~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~vt~---l~wsp~~~~~~~~~~~~k~~~~~~ 682 (1342)
-.... -...-..|+|+-..-.+++.+..+-|.+||+.+....+..++.+++. ++|. ..
T Consensus 152 ys~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn----r~-------------- 212 (1081)
T KOG0309|consen 152 YSTSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN----RF-------------- 212 (1081)
T ss_pred eeeec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh----hh--------------
Confidence 43322 22344667888655455556788899999995455566666654422 2221 00
Q ss_pred CCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCe------e-eccCCCCCCCcccccc
Q 000703 683 KDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR------I-RDFRPKWPSSSFISSD 755 (1342)
Q Consensus 683 ~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~------v-~d~~~~~~~~~~~~~~ 755 (1342)
. -..+.+.+.||+|+.|+.+... + .++ +.|.+.-+ ..
T Consensus 213 --------------------------------~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~-piw~~r~~--Pf 256 (1081)
T KOG0309|consen 213 --------------------------------K-YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF-PIWRGRYL--PF 256 (1081)
T ss_pred --------------------------------h-hhhhcccCCCCceeeecccccccccceeccccC-cceecccc--cc
Confidence 0 1124567789999999984321 1 110 12221110 01
Q ss_pred ceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCCC--CCC-CC-CEEEEEECCCeEEEE
Q 000703 756 GLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVP--GDR-SR-GRIAVLFHDNTFSVF 827 (1342)
Q Consensus 756 ~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~--g~~-~~-~~Las~s~DgtI~IW 827 (1342)
|.-.++-+ -|.++-.-..++....|+..++. .++|.||...|....|--... ||. .+ -.|++-+.|.++|+|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 12233334 23344444556677788888764 789999999987766543211 111 11 348899999999999
Q ss_pred ECCCC
Q 000703 828 DLDSQ 832 (1342)
Q Consensus 828 Dl~t~ 832 (1342)
-+...
T Consensus 337 pI~~~ 341 (1081)
T KOG0309|consen 337 PIDSQ 341 (1081)
T ss_pred eccHH
Confidence 88754
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.82 E-value=0.018 Score=64.21 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=53.6
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccC--CceeEEEecCCCccc-eEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQY--ETPLFSAALPRGCAK-FLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t--~~~l~~~~l~~~~~~-~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
++.+.||+ ++++..|..|.|=..++ ...+++...+.-..| -..++++||+..||.++..|+|++.|.-. ..+..+
T Consensus 3 ~~~~~~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGK-LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCc-EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 46678886 45566888887777664 345565555443334 35688999999999999999999999873 434444
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.79 E-value=0.015 Score=70.65 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=133.9
Q ss_pred CC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcE
Q 000703 35 SG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRV 113 (1342)
Q Consensus 35 ~g-llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V 113 (1342)
+| +++...++.|.-+|..+|+.+-..+...... .+..- .+. ..+..+.-++.++..++.+|.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---------~~~~~--~~~-----~~~~~~~v~~~~v~v~~~~g~l 132 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG---------WFSKN--KSA-----LLSGGVTVAGGKVYIGSEKGQV 132 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc---------ccccc--ccc-----ccccccEEECCEEEEEcCCCEE
Confidence 44 4444455688888999988765443222100 00000 000 0000111234567778889999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceE-EEEecCC-C
Q 000703 114 ALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLS-CIRRNPF-D 191 (1342)
Q Consensus 114 ~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~-~v~fsP~-d 191 (1342)
.-+|..+|+.+-.....+ .+.+--...+ ..+.....++.|...|..+|+.+|++......+. ....+|- .
T Consensus 133 ~ald~~tG~~~W~~~~~~----~~~ssP~v~~----~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAG----EALSRPVVSD----GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred EEEECCCCCCcccccCCC----ceecCCEEEC----CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 999999998766543322 2211001112 3555677789999999999999999875311110 0011221 2
Q ss_pred CCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecC--cchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc--CCCc
Q 000703 192 ARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTD--CTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP--HWRH 267 (1342)
Q Consensus 192 ~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~--~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSp--dg~~ 267 (1342)
...+.+++.+|.+..+|...... .-++.+... ...+.++. .+.-+| .+..
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~----~W~~~~~~~~~~~~~~~~~----------------------~~~~sP~v~~~~ 258 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQL----IWQQRISQPTGATEIDRLV----------------------DVDTTPVVVGGV 258 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChh----hheeccccCCCccchhccc----------------------ccCCCcEEECCE
Confidence 23566677788888877543110 000100000 00000000 000111 2446
Q ss_pred eEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 000703 268 IIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1342)
Q Consensus 268 ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1342)
+..++.++.+..+|+++|+.+....... ....+ .++..||.+..||.|...|.++|+.++.
T Consensus 259 vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 6677789999999999999887654321 11111 2577899999999999999999875553
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.026 Score=64.84 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=146.8
Q ss_pred CCCCceEeCCCC--eEEEE-c--CCeEE--EEeCCCccee----EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccC
Q 000703 25 NNFGSADLSPSG--LLAFA-S--GSSIS--ILDSRSLQLI----STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1342)
Q Consensus 25 ~~~~a~~~s~~g--llA~g-s--~~~V~--v~d~~s~~~~----~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1342)
.|..=++|+|++ |.+.. . .+.|. =||..+|.+- +++.|+. -+.|+.+++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~-------------p~yvsvd~~------- 99 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP-------------PCYVSVDED------- 99 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC-------------CeEEEECCC-------
Confidence 456779999998 33322 1 24443 4777767652 3344443 267888766
Q ss_pred CCCCCCCCcEEEEEe-CCCcEEEEeCCC-CeEEEEecCCCCCCC---------CeeEEEEeecCCCCcEEEEEeC-CCeE
Q 000703 94 STEPGSSHLLLAAAD-RHGRVALLDFRL-RSVVLWIDPDPNPKL---------GIQDLCWIVSKPDSFVLAAING-PSVL 161 (1342)
Q Consensus 94 s~~~~p~g~~LASg~-~dG~V~vWD~~~-g~~~~~l~~~~h~~~---------~V~~l~wsp~~~~~~lLas~s~-d~~i 161 (1342)
|++|.++. ..|.|.|.-+++ |..........|.+. .+....|.|++ ++|++.+- --.|
T Consensus 100 -------g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~---~~l~v~DLG~Dri 169 (346)
T COG2706 100 -------GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG---RYLVVPDLGTDRI 169 (346)
T ss_pred -------CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC---CEEEEeecCCceE
Confidence 57788776 458899998855 543322111223330 16777888887 78888752 2468
Q ss_pred EEEECCCCeEEEEEeC---CCCceEEEEecCCCCCEEEE-EeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhh
Q 000703 162 SLYNTTSASCMWKYDA---SPEYLSCIRRNPFDARHFCV-LGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERE 237 (1342)
Q Consensus 162 ~lWd~~tg~~i~~~~~---~~~~v~~v~fsP~d~~~la~-~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~ 237 (1342)
.++++..|........ ...-..-+.|+| +++..=+ .=.+++|.+|...+.... .+++ +++..
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~---~~~l---------Q~i~t- 235 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGK---FEEL---------QTIDT- 235 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCce---EEEe---------eeecc-
Confidence 8999987764221111 112345689999 7665533 345889999876553110 1111 11110
Q ss_pred hccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcc--CCceeEEEec-CCCccceEEEEEcCCCCEEE
Q 000703 238 LSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQ--YETPLFSAAL-PRGCAKFLDVLADPNNDLLY 313 (1342)
Q Consensus 238 ~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~--t~~~l~~~~l-~~~~~~~~~v~~~pdg~~L~ 313 (1342)
.|+.-........+..|||||.|..+- ....|.+|-+. +|+ +..+.. ..+...-.++.+.+.|++|+
T Consensus 236 --------lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 236 --------LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred --------CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEE
Confidence 121111123567789999999876554 34578888775 343 322221 11112235677889999999
Q ss_pred EEeCC-CcEEEEEc--cCCc
Q 000703 314 CAHLD-GKLSIWRR--KEGE 330 (1342)
Q Consensus 314 s~~~D-gtI~lW~~--~~g~ 330 (1342)
++++| .+|.++.+ ++|+
T Consensus 307 aa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 307 AANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEccCCCcEEEEEEcCCCce
Confidence 98876 56888766 4554
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.025 Score=64.87 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=73.7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEE--e--eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeE
Q 000703 531 LVALGTQSGAVDVVDVSANAVTAS--F--SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFR 606 (1342)
Q Consensus 531 llAsGs~DGtI~lWDl~tg~~~~~--l--~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~ 606 (1342)
.|-..+++-++-.-|..+|+++.+ | .-|.-.|+-+++.++|.++........ .+..---+-+++ .|. .++
T Consensus 130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~--~~~~~PLva~~~--~g~--~~~ 203 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD--PGDAPPLVALHR--RGG--ALR 203 (305)
T ss_pred ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC--CCccCCeEEEEc--CCC--cce
Confidence 344566777888888889987766 5 348889999999999976654432100 000001122232 222 122
Q ss_pred EeccC------CCCCeEEEEEcCCCCEEEEEE-CCCCEEEEeccCCcceeeecc
Q 000703 607 VLQKP------ERAPIRALRASSSGRYLLILF-RDAPVEVWAMTKNPIMLRSLA 653 (1342)
Q Consensus 607 ~l~g~------h~~~I~~i~~Spdg~~Las~s-~D~tIkvWDl~kt~~~l~~l~ 653 (1342)
.+..+ -...|-+|+++++|.++++.+ +.+.+-+||. .++.++....
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~-~tg~~~~~~~ 256 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA-ATGRLLGSVP 256 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC-CCCCEeeccc
Confidence 22111 235789999999999886554 7789999999 7888877544
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.75 E-value=0.00036 Score=77.09 Aligned_cols=234 Identities=14% Similarity=0.205 Sum_probs=138.9
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc-----ceeEeecCCCCCCCCCCCCC-----CCcEEEEEEecCCCccc
Q 000703 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRSL-----QLISTIPIPPPTSAGSVASL-----SPFVTAVKWIPITLRCD 91 (1342)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~-----~~~~~l~~H~~~~~~~~~~~-----~~~Vt~v~~sp~~~~~~ 91 (1342)
.+-+.++.|...| .||+|. ++.|+++..... +....+.+|.. --+|+ ...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~----EFDYLkSleieEKin~I~w~~~t~--- 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL----EFDYLKSLEIEEKINAIEWFDDTG--- 98 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc----chhhhhhccHHHHhhheeeecCCC---
Confidence 3456899999998 788885 578888875432 23445777764 12333 45689999987752
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE-------------------------------------EEEec----CC
Q 000703 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSV-------------------------------------VLWID----PD 130 (1342)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~-------------------------------------~~~l~----~~ 130 (1342)
...+|+|+ .|.+|+||.+..... +...+ ..
T Consensus 99 --------r~hFLlst-NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 99 --------RNHFLLST-NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred --------cceEEEec-CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 24456664 689999999865410 00000 01
Q ss_pred CCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE-EEEEe--CC-----CCceEEEEecCCCCCEEEEEeCCC
Q 000703 131 PNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYD--AS-----PEYLSCIRRNPFDARHFCVLGLKG 202 (1342)
Q Consensus 131 ~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~--~~-----~~~v~~v~fsP~d~~~la~~s~dG 202 (1342)
.|.- .|+++.|..|. ..++++. |=.|-||++.--.. ....+ .+ .+.|++..|+|-....+--.+..|
T Consensus 170 aH~y-hiNSiS~NsD~---et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 170 AHPY-HINSISFNSDK---ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred ccee-EeeeeeecCch---heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 2333 57788887765 6666554 67899999863221 11111 11 245778899997667777778899
Q ss_pred eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEc
Q 000703 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDL 282 (1342)
Q Consensus 203 ~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl 282 (1342)
.|.+.|++-..-.+...+.+..+.|.-...-.+. .-..+..+.|||+||.+++-.+ -+|.|||.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e---------------ivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE---------------IVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHH---------------HhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 9999887642221211111111001000000000 0113567899999998877654 68999999
Q ss_pred cC-CceeEEEecC
Q 000703 283 QY-ETPLFSAALP 294 (1342)
Q Consensus 283 ~t-~~~l~~~~l~ 294 (1342)
.. ..++.+++++
T Consensus 309 nm~k~pikTi~~h 321 (460)
T COG5170 309 NMAKNPIKTIPMH 321 (460)
T ss_pred ccccCCceeechH
Confidence 74 3456666543
No 303
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.73 E-value=0.016 Score=67.07 Aligned_cols=257 Identities=19% Similarity=0.218 Sum_probs=148.6
Q ss_pred ceEeCCCC-eEEEE----c-------CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCC
Q 000703 29 SADLSPSG-LLAFA----S-------GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTE 96 (1342)
Q Consensus 29 a~~~s~~g-llA~g----s-------~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~ 96 (1342)
-+..||+| .+..+ + ...|.+||+.+.+....+..+..+.+ ..-......++|.|
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~----~~~~~~~~~~ls~d---------- 105 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA----QVVPYKNMFALSAD---------- 105 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B------BS--GGGEEE-TT----------
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh----eecccccceEEccC----------
Confidence 46789998 33321 1 14678999999988775544432000 00001223455655
Q ss_pred CCCCCcEEEEE--eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC-CCeEEE
Q 000703 97 PGSSHLLLAAA--DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMW 173 (1342)
Q Consensus 97 ~~p~g~~LASg--~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~ 173 (1342)
|+++... .-.-.|-|-|+..++.+.+++.+| +.+. -|.++ +-+.+..+||.+.--.++ .|+...
T Consensus 106 ----gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~i-yP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 106 ----GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLI-YPSGN--RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp ----SSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEE-EEEET--TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ----CcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEE-EecCC--CceEEEecCCceEEEEECCCCCEeE
Confidence 4555544 344568899999999999886642 1122 35554 335677789988888776 565542
Q ss_pred EE--eCCC--CceE-EEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000703 174 KY--DASP--EYLS-CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1342)
Q Consensus 174 ~~--~~~~--~~v~-~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1342)
+. .++. +++. .=+++. ++.++...+-+|.|+..|+++.... ..+.|.+.++. .-+..|-.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~--~~~~~~~~t~~----e~~~~WrP-------- 237 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAK--FGKPWSLLTDA----EKADGWRP-------- 237 (342)
T ss_dssp EEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEE--EEEEEESS-HH----HHHTTEEE--------
T ss_pred eeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccc--ccCcccccCcc----ccccCcCC--------
Confidence 22 2222 2221 112222 4567777888999999999885431 13444332110 11123321
Q ss_pred CCcCccceEEEEEccCCCceEEEEcC----------CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCC-EEEEEe-
Q 000703 249 SGLFPLYMVKFTFSPHWRHIIFVTFP----------RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAH- 316 (1342)
Q Consensus 249 ~~~~~~~v~~~aFSpdg~~ll~~~~d----------~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~- 316 (1342)
+-.-.++|++...+|...... .+|.++|+++++.+..++++ .+..++..+.|.+ .|++..
T Consensus 238 -----GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 238 -----GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp ------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEET
T ss_pred -----cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcC
Confidence 111124788765555544421 27999999999999999876 3455666666555 787765
Q ss_pred CCCcEEEEEccCCceeeeE
Q 000703 317 LDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 317 ~DgtI~lW~~~~g~~~~~~ 335 (1342)
.|+.|.++|..+|+.++.+
T Consensus 310 ~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TTTEEEEEETTT--EEEEE
T ss_pred CCCeEEEEeCcCCcEEeeh
Confidence 5899999999999987776
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.68 E-value=0.0006 Score=87.46 Aligned_cols=189 Identities=20% Similarity=0.209 Sum_probs=133.8
Q ss_pred HHcCCHHHHHhhhcccCCC----------CchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHHHhcC
Q 000703 1123 VSVGNLEAAVSLLLSTSPE----------SSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVG 1192 (1342)
Q Consensus 1123 ~~~g~~~~av~lLl~~~pe----------~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~~~~g 1192 (1342)
.-||+.++|+..|-+..++ .-..|.+|| ++= .-+++..+..--..|++|+.+.+.+++.-+|-.+|
T Consensus 891 ~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL---~ly-~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEAL---ALY-KPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhh---hee-ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 4466788888877777753 011344444 221 12355556666779999999999999999999999
Q ss_pred chHHHHHHhhccCcHHHHHHHHHhh-cCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHH
Q 000703 1193 RYQEACSQLQDAGCWTDAATLAATH-LKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAA 1271 (1342)
Q Consensus 1193 ~~~~a~~~l~~~~~W~~a~~la~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~~~~~~~aa 1271 (1342)
+.++|....++.|.|++|+.+|+.- ....|+..+-+..+..|.+..+-...|.++...+++..+|..+|-+.+.|+.|-
T Consensus 967 klekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 967 KLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHH
Confidence 9999999999999999999999866 333444445588999997777656788888888999999999999999999997
Q ss_pred HHHHHHH--HHhhhhhcccCCCCCCCCCccCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 000703 1272 MFVLACR--EIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLV 1331 (1342)
Q Consensus 1272 ~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1331 (1342)
..+.... +...+.+.. --+-+...-.|.|..+-|-|+.|.++|.
T Consensus 1047 rva~~~~~~d~iee~l~~----------------al~e~~~~~~~~L~~~k~~f~~yk~RLl 1092 (1265)
T KOG1920|consen 1047 RVASKAKRDDIIEEVLKP----------------ALLEAFGEVLEFLEDVKEQFVKYKKRLL 1092 (1265)
T ss_pred HHHHhcccchHHHHHHhH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665422 111111110 0000122334777787888888877664
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.68 E-value=8.9e-05 Score=58.12 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=33.7
Q ss_pred eeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEe
Q 000703 604 AFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1342)
Q Consensus 604 ~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWD 641 (1342)
+++.+++ |..+|++|+|+|++++|++++.|++|++||
T Consensus 3 ~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4566666 899999999999999999999999999997
No 306
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00019 Score=83.91 Aligned_cols=164 Identities=9% Similarity=0.152 Sum_probs=110.0
Q ss_pred ccCCCCCCCCCCce-EeCCCC-eEEEEcCCeEEEEeCCC-------cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCC
Q 000703 17 MLPGPPSRNNFGSA-DLSPSG-LLAFASGSSISILDSRS-------LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~-~~s~~g-llA~gs~~~V~v~d~~s-------~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1342)
.++| |.+.+.++ +.+-.+ ++....+.+|.+|..++ ..+.-|+..|+. .|..+.|-.+.
T Consensus 730 nf~G--H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----------~i~~igfL~~l 796 (1034)
T KOG4190|consen 730 NFTG--HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----------PIHDIGFLADL 796 (1034)
T ss_pred cccC--cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----------cccceeeeecc
Confidence 3455 44444443 333334 44444578999998764 124557889998 89999888653
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC
Q 000703 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1342)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1342)
+.+||+ ||.|.+||.--|+.+....-....+ .+.-+...++-+..-++|.++...+++++|.+
T Consensus 797 --------------r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 797 --------------RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred --------------ceeeec--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecc
Confidence 457765 6889999987787776443222222 45555555653222344555889999999999
Q ss_pred CCe--EEEEEe---CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 168 SAS--CMWKYD---ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 168 tg~--~i~~~~---~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
.++ +-|+.. ++...+.|++..| .+++++++-..|+|.+.|.+.
T Consensus 860 sce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 860 SCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred cccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence 775 445543 3335678999999 899999998889999988654
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.055 Score=66.27 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccc-hHHHHHHHHHHHHHHHHhcCChhhhHH
Q 000703 1109 LEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVS-RSLLELAVKVVAANMVRNDRSLSGTHL 1187 (1342)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s-~~~~~~~~k~~a~~l~~~~~~~~gv~~ 1187 (1342)
+..+++=+++++.++..|+++-|-+.+-.+. | |- +-.+|.++.. .+.++ .+|..-...|+.--+.+.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-d---~~----~L~lLy~~~g~~~~L~----kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK-D---FS----GLLLLYSSTGDREKLS----KLAKIAEERGDINIAFQA 411 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HH----HHHHHHHHCT-HHHHH----HHHHHHHHTT-HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-C---cc----ccHHHHHHhCCHHHHH----HHHHHHHHccCHHHHHHH
Confidence 3455566899999999999999999888777 4 33 3334444443 44443 345545557777788899
Q ss_pred HHhcCchHHHHHHhhccCcHHHHHHHHHhhc
Q 000703 1188 LCAVGRYQEACSQLQDAGCWTDAATLAATHL 1218 (1342)
Q Consensus 1188 ~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l 1218 (1342)
+.+.|++++.++.|...|+..+|+..|+++.
T Consensus 412 ~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 412 ALLLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.038 Score=64.11 Aligned_cols=273 Identities=19% Similarity=0.207 Sum_probs=157.1
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEE----------eCCCcE
Q 000703 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA----------DRHGRV 113 (1342)
Q Consensus 44 ~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg----------~~dG~V 113 (1342)
+.|.|+|..+++.+-.++.- ..-.+..||++ ..+.++ .+.-.|
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-------------~~~~~~~spdg--------------k~~y~a~T~~sR~~rG~RtDvv 69 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-------------FLGNVALSPDG--------------KTIYVAETFYSRGTRGERTDVV 69 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-------------SSEEEEE-TTS--------------SEEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeecc-------------cCCceeECCCC--------------CEEEEEEEEEeccccccceeEE
Confidence 47999999999987665421 22345567764 455543 355679
Q ss_pred EEEeCCCCeEEEEecCCCC-CC---CCeeEEEEeecCCCCcEEEEE--eCCCeEEEEECCCCeEEEEEeCCCCceEEEEe
Q 000703 114 ALLDFRLRSVVLWIDPDPN-PK---LGIQDLCWIVSKPDSFVLAAI--NGPSVLSLYNTTSASCMWKYDASPEYLSCIRR 187 (1342)
Q Consensus 114 ~vWD~~~g~~~~~l~~~~h-~~---~~V~~l~wsp~~~~~~lLas~--s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~f 187 (1342)
.+||..+-....+++++.. .. .....++++.++ +++... +....|.+=|+..++.+..++- + -|.-.
T Consensus 70 ~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-P---GC~~i 142 (342)
T PF06433_consen 70 EIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDT-P---GCWLI 142 (342)
T ss_dssp EEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEG-T---SEEEE
T ss_pred EEEecCcCcccceEecCCcchheecccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecC-C---CEEEE
Confidence 9999999988887776642 11 022345666665 555544 4557888889888887766654 2 24444
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000703 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1342)
Q Consensus 188 sP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ 267 (1342)
-|..++.|.+.|.||.+..+.+...+..-....++. + .. ..+. +..=+++.++.+
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F---~------~~---------------~dp~-f~~~~~~~~~~~ 197 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF---D------PD---------------DDPL-FEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES---S------TT---------------TS-B--S--EEETTTTE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeecccc---C------CC---------------Cccc-ccccceECCCCe
Confidence 565668899999999999877654221100000000 0 00 0010 111156677778
Q ss_pred eEEEEcCCeEEEEEccCCcee--EEEecCC--------CccceEEEEEcCCCCEEEEE--------eCCCcEEEE--Ecc
Q 000703 268 IIFVTFPRELVVFDLQYETPL--FSAALPR--------GCAKFLDVLADPNNDLLYCA--------HLDGKLSIW--RRK 327 (1342)
Q Consensus 268 ll~~~~d~~I~iwDl~t~~~l--~~~~l~~--------~~~~~~~v~~~pdg~~L~s~--------~~DgtI~lW--~~~ 327 (1342)
+++.++.|.|+-.|+...... ..+.+-. ..+....++..+....||.. |.|+.=.|| |.+
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 888999999999998765432 2222210 01223345555666667764 445555666 567
Q ss_pred CCceeeeEeecccccccccccCCCCceEEEEEccCchhhhhhhhhcCCCCCCCCCccccCCCCcccccccccCccEEEEE
Q 000703 328 EGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISI 407 (1342)
Q Consensus 328 ~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~las~ 407 (1342)
+++.+..+. .+. .+.++.+++++ .-+|...
T Consensus 278 t~krv~Ri~-l~~------------~~~Si~Vsqd~-------------------------------------~P~L~~~ 307 (342)
T PF06433_consen 278 THKRVARIP-LEH------------PIDSIAVSQDD-------------------------------------KPLLYAL 307 (342)
T ss_dssp TTEEEEEEE-EEE------------EESEEEEESSS-------------------------------------S-EEEEE
T ss_pred CCeEEEEEe-CCC------------ccceEEEccCC-------------------------------------CcEEEEE
Confidence 777666652 111 24456666653 2255554
Q ss_pred E-cCCcEEEEEcccccccc
Q 000703 408 S-DDGKVWNWLLTAEGAGD 425 (1342)
Q Consensus 408 s-~DG~v~lWdl~~~~~~~ 425 (1342)
+ .+|.|.+||..+++..+
T Consensus 308 ~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp ETTTTEEEEEETTT--EEE
T ss_pred cCCCCeEEEEeCcCCcEEe
Confidence 4 58999999999987654
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.53 E-value=0.0023 Score=69.78 Aligned_cols=73 Identities=12% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEE--EEEeCCCCceEEEEecC---------CCCCEEEEEeC
Q 000703 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM--WKYDASPEYLSCIRRNP---------FDARHFCVLGL 200 (1342)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i--~~~~~~~~~v~~v~fsP---------~d~~~la~~s~ 200 (1342)
|.+..|..+.++-+ ..|+++-.++.+...+..++.+. |..+...+++.+++.+. --+..+|.++.
T Consensus 34 ~~d~~~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 34 HADVKLSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred ccceEEEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 33334555666543 56777766666666665555543 23333344455554321 02468899999
Q ss_pred CCeEEEEE
Q 000703 201 KGLLLSVR 208 (1342)
Q Consensus 201 dG~v~~~d 208 (1342)
||.+.+++
T Consensus 110 dg~~~v~s 117 (319)
T KOG4714|consen 110 DGSLAVFS 117 (319)
T ss_pred CceEEEEe
Confidence 99988865
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.49 E-value=0.084 Score=59.61 Aligned_cols=204 Identities=14% Similarity=0.097 Sum_probs=124.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEc-CCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeE
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWL-GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFR 606 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs-~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~ 606 (1342)
.+.++.+....|.|..||..++.... +.. ....++.+. ++++++.+... .+.+.|+.+|+...+.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~~~G~~~~~~~g~l~v~~~~-----------~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PGPNGMAFDRPDGRLYVADSG-----------GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EES--SSEEEEEEECTTSEEEEEETT-----------CEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CCCceEEEEccCCEEEEEEcC-----------ceEEEecCCCcEEEEe
Confidence 57888888889999999998876532 222 226778887 77887765432 4566699999765555
Q ss_pred Eec-cC-CCCCeEEEEEcCCCCEEEEEECC--------CCEEEEeccCCcceeeecc--CceEEEEEcCCCCCCCCCCCC
Q 000703 607 VLQ-KP-ERAPIRALRASSSGRYLLILFRD--------APVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGP 674 (1342)
Q Consensus 607 ~l~-g~-h~~~I~~i~~Spdg~~Las~s~D--------~tIkvWDl~kt~~~l~~l~--~~vt~l~wsp~~~~~~~~~~~ 674 (1342)
... +. .....+.+++.|+|++.++.... +.|-.++. .++...... ..-+.++|+|+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~~~~~pNGi~~s~d---------- 144 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP--DGKVTVVADGLGFPNGIAFSPD---------- 144 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET--TSEEEEEEEEESSEEEEEEETT----------
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC--CCeEEEEecCcccccceEECCc----------
Confidence 442 21 23457899999999988877654 23444554 233222111 11257888865
Q ss_pred CCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeE-EEEecCCCEEEEEec--CCeeeccC--CCCCCC
Q 000703 675 SRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF-AFALANGALGVFEVH--GRRIRDFR--PKWPSS 749 (1342)
Q Consensus 675 ~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~l-a~~~~DgtI~lwdv~--g~~v~d~~--~~~~~~ 749 (1342)
++.| ++-+..+.|..++++ +..+...+ ..++
T Consensus 145 ------------------------------------------g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 180 (246)
T PF08450_consen 145 ------------------------------------------GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-- 180 (246)
T ss_dssp ------------------------------------------SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S--
T ss_pred ------------------------------------------chheeecccccceeEEEeccccccceeeeeeEEEcC--
Confidence 2333 344567778888884 33221100 0111
Q ss_pred ccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEe-cC
Q 000703 750 SFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFS-PV 805 (1342)
Q Consensus 750 ~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fS-Pd 805 (1342)
...+..-.|++ +|++.++.-..+.|.++|.+ |+ +..+......+++++|. |+
T Consensus 181 ---~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 181 ---GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp ---SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred ---CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 11133556777 78888888889999999998 65 55554445589999995 44
No 311
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.31 E-value=0.02 Score=62.97 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=119.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCC-CcEEEEEeCCCeEEEEECCCCeEEEEEeCC
Q 000703 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPD-SFVLAAINGPSVLSLYNTTSASCMWKYDAS 178 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~-~~lLas~s~d~~i~lWd~~tg~~i~~~~~~ 178 (1342)
..-+||.|+..|...+|...+.+....+ ...| +.++.....--+ .--+..++.|.++++.+++.+......-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~s----nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ-CDVS----NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee-eccc----ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4678999999999999998876544432 1222 222221111001 122445778999999998754322222111
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.-.+..++.+| |++.++..+....|+.+.+...++.- .+ .+. +| ....+.+.
T Consensus 158 ~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~--~~-~~~---------------------a~--t~D~gF~~- 209 (344)
T KOG4532|consen 158 NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYI--EN-IYE---------------------AP--TSDHGFYN- 209 (344)
T ss_pred ccceeeeEEcC-CCceEEEecCCCcceEEEeCCcccee--ee-eEe---------------------cc--cCCCceee-
Confidence 12467899999 99999999988888887553321100 01 000 01 11122344
Q ss_pred EEEccCCCceEEEEcCCeEEEEEccCCcee-EEEec--CCCccceEEEEEcCCCC--EEEEEeCCCcEEEEEccCCce
Q 000703 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPL-FSAAL--PRGCAKFLDVLADPNND--LLYCAHLDGKLSIWRRKEGEQ 331 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l-~~~~l--~~~~~~~~~v~~~pdg~--~L~s~~~DgtI~lW~~~~g~~ 331 (1342)
+||......+++..|+++.|||+..-.+. ....- +.+.+.+..+-|++-|. +|+-.-.=+.+.+-|.+++..
T Consensus 210 -S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 210 -SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred -eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 88988889999999999999999864432 22111 23456788888887553 333333346778888887763
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0034 Score=72.23 Aligned_cols=95 Identities=18% Similarity=0.309 Sum_probs=75.9
Q ss_pred EEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEE
Q 000703 46 ISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVL 125 (1342)
Q Consensus 46 V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~ 125 (1342)
|++.++.+++.++.|++|.. .|..++|||.. .-+|..++.+.+|+|-|+++..++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~-----------~IrdlafSp~~-------------~GLl~~asl~nkiki~dlet~~~vs 230 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGS-----------FIRDLAFSPFN-------------EGLLGLASLGNKIKIMDLETSCVVS 230 (463)
T ss_pred eEEeccCCcchhhcccccch-----------hhhhhccCccc-------------cceeeeeccCceEEEEecccceeee
Confidence 55666666666777777776 89999999864 2368899999999999999988887
Q ss_pred EecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe
Q 000703 126 WIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS 170 (1342)
Q Consensus 126 ~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~ 170 (1342)
.+. .+ + +|.++||..+. ..++-+|...|.|-++|++..+
T Consensus 231 sy~--a~-~-~~wSC~wDlde--~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 231 SYI--AY-N-QIWSCCWDLDE--RHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hee--cc-C-CceeeeeccCC--cceeEEeccCceEEEEEccCCC
Confidence 753 23 5 89999998876 4899999999999999997443
No 313
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.26 E-value=0.02 Score=62.90 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=109.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEe-eecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCEEEEEEcCCCceeee
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l-~gH~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1342)
-..||.|+..|...+|...|.+.+..+ ..|...|.-+.=.-+. ++.-++ .|.++++.++.-+..+..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s----------ndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS----------NDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc----------CCcceeEEEEecCcccce
Confidence 358899999999999999877654333 3444322211111111 222222 245777777755442211
Q ss_pred EEeccCCCCC--eEEEEEcCCCCEEEEEECCCCEEEEeccCCccee-eeccCce----EEEEEcCCCCCCCCCCCCCCcc
Q 000703 606 RVLQKPERAP--IRALRASSSGRYLLILFRDAPVEVWAMTKNPIML-RSLALPF----TVLEWTLPTVPWPSQTGPSRQS 678 (1342)
Q Consensus 606 ~~l~g~h~~~--I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l-~~l~~~v----t~l~wsp~~~~~~~~~~~~k~~ 678 (1342)
. |-+. +.++.+|+|++++++.+....|-.|.+.+.+.-+ +....+- -...|+
T Consensus 154 -~----h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s---------------- 212 (344)
T KOG4532|consen 154 -V----HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS---------------- 212 (344)
T ss_pred -e----eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec----------------
Confidence 1 3332 7899999999999999999999999884333221 2111010 011121
Q ss_pred ccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCee--eccCCCCCCCccccccc
Q 000703 679 SLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRI--RDFRPKWPSSSFISSDG 756 (1342)
Q Consensus 679 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v--~d~~~~~~~~~~~~~~~ 756 (1342)
...+.||++..||++-+||++.... .......| .|.|
T Consensus 213 ------------------------------------~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp-----~hnG 251 (344)
T KOG4532|consen 213 ------------------------------------ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP-----HHNG 251 (344)
T ss_pred ------------------------------------cCcceEEEEecCCcEEEEEecccccchhhhcccCC-----CCCC
Confidence 2347899999999999999954332 11001111 4677
Q ss_pred eEEEEee--cC--CEEEEEeCCCcEEEEECCCCc
Q 000703 757 LITAMAY--RL--PHVVMGDRSGNIRWWDVTTGH 786 (1342)
Q Consensus 757 ~V~~va~--dg--~~LasGs~DgtI~lWDl~tg~ 786 (1342)
.+..+-| .| ++|.-.-.=+.+.+-|+++++
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 7777766 22 355555555678888888765
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.17 E-value=0.0055 Score=66.95 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=58.5
Q ss_pred EEEEee---cCCEEEEEeCCCcEEEEECCCCc--eeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000703 758 ITAMAY---RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1342)
Q Consensus 758 V~~va~---dg~~LasGs~DgtI~lWDl~tg~--~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t 831 (1342)
|.+++- ..+.+++|+.||.+.+||.+... ...+..|+.+|..|.|+|-.+ ..|.+++.||.+--||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p-----~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP-----EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc-----hheeEecCCCcEEEEcCCC
Confidence 666665 55688999999999999998875 345789999999999999854 5799999999999999874
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.13 E-value=0.0061 Score=76.24 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=133.2
Q ss_pred eEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeC
Q 000703 30 ADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1342)
Q Consensus 30 ~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1342)
+-.+|+.++.-|-...+..+|.++.+..++..--.+ .|+-++- +++.|-.|+.
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----------~v~imR~----------------Nnr~lf~G~t 195 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----------GVTIMRY----------------NNRNLFCGDT 195 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCC-----------ceEEEEe----------------cCcEEEeecc
Confidence 344555566656667788889888887776543333 5777764 3678999999
Q ss_pred CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC---------CCeEEEEECCCCeEEEEEeCCCC
Q 000703 110 HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING---------PSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 110 dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~---------d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
.|+|.|-|..+-+.+++| ..|++ .|.++.- .| ++|++++- |..|++||++.=+.+.-+.++-+
T Consensus 196 ~G~V~LrD~~s~~~iht~--~aHs~-siSDfDv--~G---NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~ 267 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTF--DAHSG-SISDFDV--QG---NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG 267 (1118)
T ss_pred cceEEeecCCcCceeeee--ecccc-ceeeeec--cC---CeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence 999999999999999996 67888 8887543 33 78888863 56789999986655544444333
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000703 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1342)
Q Consensus 181 ~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1342)
+ .-++|.|.=..++|+++..|...+.|..+-+. ......+.. | -...+..+.
T Consensus 268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-P~~~~~~v~----------------------p----~~s~i~~fD 319 (1118)
T KOG1275|consen 268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-PPAGVKMVN----------------------P----NGSGISAFD 319 (1118)
T ss_pred c-hhhhhcccccceEEEEecccceeeccccccCC-CccceeEEc----------------------c----CCCcceeEE
Confidence 3 45788897788999999999998877322100 000111110 0 012478899
Q ss_pred EccCCCceEEEEcCCeEEEEE
Q 000703 261 FSPHWRHIIFVTFPRELVVFD 281 (1342)
Q Consensus 261 FSpdg~~ll~~~~d~~I~iwD 281 (1342)
||++|.-++++-.++.|.+|-
T Consensus 320 iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 320 ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ecCCCceEEEecccCcEeeec
Confidence 999999999999999999998
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.00035 Score=85.89 Aligned_cols=210 Identities=17% Similarity=0.079 Sum_probs=130.0
Q ss_pred CCCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCc
Q 000703 25 NNFGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs~-~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1342)
....|++||-+. .|+.|+. +-|.++++.+|+.......|.. .||-|.=|.|| ..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----------avT~vePs~dg-------------s~ 1157 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----------AVTLVEPSVDG-------------ST 1157 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc-----------ccccccccCCc-------------ce
Confidence 357899999865 8888865 7999999999998888889987 89988666554 23
Q ss_pred EEEEEeCCC-cEEEEeCCC-CeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEe-C--
Q 000703 103 LLAAADRHG-RVALLDFRL-RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD-A-- 177 (1342)
Q Consensus 103 ~LASg~~dG-~V~vWD~~~-g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~-~-- 177 (1342)
.|-|++... ...+|+..+ +...+.| . .-.++.|+..-.. +.|.+.. .-..|||++|+.++.++- .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf--~-----ed~~vkFsn~~q~-r~~gt~~--d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSF--D-----EDKAVKFSNSLQF-RALGTEA--DDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred eeeeccccCchHHHhccccccCccccc--c-----ccceeehhhhHHH-HHhcccc--cceEEEecccCcHHHHhcCcch
Confidence 344444444 678999843 4555554 2 2345678765321 3444433 456799999998765532 1
Q ss_pred -CCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000703 178 -SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1342)
Q Consensus 178 -~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1342)
..-.-++..|+| +...+. .||. +||+.... . +..| .++.. -
T Consensus 1228 ~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~--a--Ih~F---------D~ft~-------------------~ 1269 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPE--A--IHRF---------DQFTD-------------------Y 1269 (1516)
T ss_pred hhhhhccccccCC-CcceEe---eCce--eeeeccHH--H--Hhhh---------hhhee-------------------c
Confidence 111226889999 333332 2443 57764321 0 1111 11110 0
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000703 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1342)
Q Consensus 257 ~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1342)
..=.|+|.|..++..+. |||+.|-+.++.++- -....|.|..-|+.+|..
T Consensus 1270 ~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1270 GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ccccccCCCceEEeech-----hhhhHHHHHHhcCcc----ccceEEEeccCccchhhh
Confidence 11179999988887764 899998887765542 123456666667766643
No 317
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.02 E-value=0.84 Score=57.78 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCHHHHHhhhcc--c-CCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHHHhcCc
Q 000703 1117 NRVHELVSVGNLEAAVSLLLS--T-SPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGR 1193 (1342)
Q Consensus 1117 ~~~~~~~~~g~~~~av~lLl~--~-~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~~~~g~ 1193 (1342)
.|+--++++|.. ..+.-|-. . .+|+.. ..+ .++-.=+.+-|+.++.-=|=-|++..+.+.++-++.++|+
T Consensus 408 ~~al~YlAl~Kk-~vL~~L~k~a~~~~~~~k-~~~-----Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~ 480 (631)
T PF12234_consen 408 DCALFYLALGKK-KVLAGLWKMASWHKEQQK-MAK-----FLSNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGS 480 (631)
T ss_pred HHHHHHHHhccH-HHHHHHHHhhhcccccHH-HHH-----HHhhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhccc
Confidence 567788888875 33333332 1 333211 111 1222223444444433334447778889999999999999
Q ss_pred hHHHHHHhhc-cCcHHHHHHHHHhhcCC--ccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000703 1194 YQEACSQLQD-AGCWTDAATLAATHLKG--SDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1194 ~~~a~~~l~~-~~~W~~a~~la~~~l~~--~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
.+|||..|.. .+...-|+.+|+..-.. +...++|+...=-....+.+.|-+..+|-.+|...+|++.|.+
T Consensus 481 l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~ 553 (631)
T PF12234_consen 481 LKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRALIS 553 (631)
T ss_pred HHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999997755 48899999999987432 2233444433222222455578888888899999999999986
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.0015 Score=73.52 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=92.3
Q ss_pred EEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-----eeeecccc
Q 000703 722 FALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-----SSQFSTHR 794 (1342)
Q Consensus 722 ~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~-----~~~l~~H~ 794 (1342)
+.+.+-.|.+-++++..-+.+ ...+.|.++.| .++++..|..+|.|...|++.+. ..+---|.
T Consensus 229 s~G~sqqv~L~nvetg~~qsf----------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSF----------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred cccccceeEEEEeeccccccc----------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence 445566677788765432221 12234666667 57899999999999999999751 33334588
Q ss_pred ccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcc--cccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeC
Q 000703 795 EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL--ANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1342)
Q Consensus 795 ~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l--~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~ 872 (1342)
..|+++..--- +.++|.+.+.+|+|++||++--++- ..+. .||.....-+-+-..+. +. .++++|.
T Consensus 299 Ssvtslq~Lq~-----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~e-----eg-~I~s~Gd 366 (425)
T KOG2695|consen 299 SSVTSLQILQF-----SQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEE-----EG-SIFSVGD 366 (425)
T ss_pred cchhhhhhhcc-----ccceEeeccCcCceeEeeehhhhcccceeee-ecccccccccccccccc-----cc-eEEEccC
Confidence 88888764431 2268888889999999999866531 1233 57742211222223333 44 4678999
Q ss_pred CCcEEEEEccCC
Q 000703 873 DSSFRLIEVNTS 884 (1342)
Q Consensus 873 DgtIrvWdi~~~ 884 (1342)
|.-.|+|.+..+
T Consensus 367 DcytRiWsl~~g 378 (425)
T KOG2695|consen 367 DCYTRIWSLDSG 378 (425)
T ss_pred eeEEEEEecccC
Confidence 999999999844
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.0019 Score=72.80 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=81.7
Q ss_pred ceEeCCCC-eEEEEcC-CeEEEEeCCCc-----ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCC
Q 000703 29 SADLSPSG-LLAFASG-SSISILDSRSL-----QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 29 a~~~s~~g-llA~gs~-~~V~v~d~~s~-----~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
|..|.-.+ |+..|+. +.|.++|.+.. -..+.|- |.. .||+++--.- ++
T Consensus 257 AlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S-----------svtslq~Lq~-------------s~ 311 (425)
T KOG2695|consen 257 ALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS-----------SVTSLQILQF-------------SQ 311 (425)
T ss_pred HHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc-----------chhhhhhhcc-------------cc
Confidence 55665544 6666665 68999998764 2344443 554 7888765431 25
Q ss_pred cEEEEEeCCCcEEEEeCCCCeE---EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 102 LLLAAADRHGRVALLDFRLRSV---VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~---~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
+.|.+.+.+|+|++||.+--++ +++. .||.+ .-.-+-+.-+... ..+++++.|...+||.++.|..+.+..+
T Consensus 312 q~LmaS~M~gkikLyD~R~~K~~~~V~qY--eGHvN-~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRATKCKKSVMQY--EGHVN-LSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ceEeeccCcCceeEeeehhhhcccceeee--ecccc-ccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCC
Confidence 7888889999999999876555 6664 56644 2223333333222 5778899999999999999998887766
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.94 E-value=0.13 Score=67.15 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHH--HcCCHHHHHhhhcccCCCCchhHHHHHHHh------hhhccc---chHHH--HHHHHHHHHHH-
Q 000703 1110 EGEQAIQNRVHELV--SVGNLEAAVSLLLSTSPESSYFYANALRAV------ALSSAV---SRSLL--ELAVKVVAANM- 1175 (1342)
Q Consensus 1110 ~~~~~~~~~~~~~~--~~g~~~~av~lLl~~~pe~~~~~~~al~a~------~~a~~~---s~~~~--~~~~k~~a~~l- 1175 (1342)
..++++++..+.-. .--..+.|+++||-.-+- ..-|.-||-.+ +||=.- .+|++ =+..|..-.++
T Consensus 807 ~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdv-n~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~r 885 (1265)
T KOG1920|consen 807 EIEEALQKIKELQLAQVAVSADEALKHLLFLVDV-NELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLR 885 (1265)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHhhccH-HHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhh
Confidence 44666554432222 123468999977666522 23444444322 222111 25544 11113111212
Q ss_pred ---HH--hcCChhhhHHHHhcC--chHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHH
Q 000703 1176 ---VR--NDRSLSGTHLLCAVG--RYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILY 1248 (1342)
Q Consensus 1176 ---~~--~~~~~~gv~~~~~~g--~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 1248 (1342)
|. .++.++++--+..+| -+.|..+|.+..|...+|+.|-+.+. +-+..++.-||+||.+..+ ..+|.+.|
T Consensus 886 kF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~--e~~k~i~~~ya~hL~~~~~-~~~Aal~Y 962 (1265)
T KOG1920|consen 886 KFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDS--EKQKVIYEAYADHLREELM-SDEAALMY 962 (1265)
T ss_pred heeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCH--HHHHHHHHHHHHHHHHhcc-ccHHHHHH
Confidence 22 456677887788888 78899999999999999999988887 7778999999999987653 45777788
Q ss_pred HHhCCHHHHHHHHHhcCCchH
Q 000703 1249 VAAGGLQEALAALREAQHPDT 1269 (1342)
Q Consensus 1249 ~~~g~~~~~~~~l~~~~~~~~ 1269 (1342)
.++|+.+||++.-.+.+...-
T Consensus 963 e~~GklekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 963 ERCGKLEKALKAYKECGDWRE 983 (1265)
T ss_pred HHhccHHHHHHHHHHhccHHH
Confidence 888888888777666444333
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.00074 Score=83.19 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=89.5
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCc--EEE
Q 000703 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR--LVS 575 (1342)
Q Consensus 498 ~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~--llS 575 (1342)
.-|...-||++|+. +...|++|+..|.|+++++.+|......++|.++|+-|+-+-+|. +.+
T Consensus 1098 rd~~~~fTc~afs~----------------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG----------------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hccccceeeEEeec----------------CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee
Confidence 34567788999886 467899999999999999999999999999999999999988874 333
Q ss_pred EecCCcccccCcccCEEEEEEcCC-CceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeee
Q 000703 576 FSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1342)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~ 651 (1342)
.+++.+ -..+|++.+ +. +...+.+ -.++.||..-++-+.|....-..|||+ .++..+.+
T Consensus 1162 ss~S~P---------lsaLW~~~s~~~--~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDv-qT~~~l~t 1221 (1516)
T KOG1832|consen 1162 SSSSSP---------LSALWDASSTGG--PRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDV-QTCSPLQT 1221 (1516)
T ss_pred ccccCc---------hHHHhccccccC--ccccccc-----cceeehhhhHHHHHhcccccceEEEec-ccCcHHHH
Confidence 333332 245898853 33 2222222 257889987766677766677899999 78876655
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.86 E-value=0.012 Score=73.69 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=102.7
Q ss_pred CeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeC---------CCcEEEEECCCCc-e
Q 000703 718 ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDR---------SGNIRWWDVTTGH-S 787 (1342)
Q Consensus 718 e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~---------DgtI~lWDl~tg~-~ 787 (1342)
..+..|...|+|.+-|.+..+.. ++|..|.+.|.++...|++|++++. |.-|+|||++.-+ +
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~i--------ht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETI--------HTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred cEEEeecccceEEeecCCcCcee--------eeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 45677888999999988654432 1345789999999999999999874 6678999998854 5
Q ss_pred eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC-CCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeE
Q 000703 788 SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS-QDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLV 866 (1342)
Q Consensus 788 ~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t-~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~ 866 (1342)
..++-|.++ .=++|.|... .++|+++..|.+.+-|..+ ..+.+... .-+..+..+..+++++. ++ .
T Consensus 260 ~PI~~~~~P-~flrf~Psl~-----t~~~V~S~sGq~q~vd~~~lsNP~~~~~-~v~p~~s~i~~fDiSsn----~~--a 326 (1118)
T KOG1275|consen 260 SPIQFPYGP-QFLRFHPSLT-----TRLAVTSQSGQFQFVDTATLSNPPAGVK-MVNPNGSGISAFDISSN----GD--A 326 (1118)
T ss_pred CCcccccCc-hhhhhccccc-----ceEEEEecccceeeccccccCCCcccee-EEccCCCcceeEEecCC----Cc--e
Confidence 555555555 5578899854 6899999999999998332 11211121 11222345899999997 55 6
Q ss_pred EEEEeCCCcEEEEE
Q 000703 867 LCIAGADSSFRLIE 880 (1342)
Q Consensus 867 L~s~s~DgtIrvWd 880 (1342)
|+.|..+|.|-+|.
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 89999999999997
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.015 Score=72.36 Aligned_cols=170 Identities=13% Similarity=0.210 Sum_probs=108.1
Q ss_pred CcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCccee--eeccCceEEEEEcC
Q 000703 586 GGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIML--RSLALPFTVLEWTL 663 (1342)
Q Consensus 586 g~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l--~~l~~~vt~l~wsp 663 (1342)
|+.++.+.+.+.. |..+.. .. |.+. ..+|.|++++|.||+|.|-.+ -+.... ..++.++.+++++|
T Consensus 55 GtH~g~v~~~~~~-~~~~~~---~~-~s~~------~~~Gey~asCS~DGkv~I~sl-~~~~~~~~~df~rpiksial~P 122 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQ-GNPKTN---FD-HSSS------ILEGEYVASCSDDGKVVIGSL-FTDDEITQYDFKRPIKSIALHP 122 (846)
T ss_pred ccccceEEEEecC-Cccccc---cc-cccc------ccCCceEEEecCCCcEEEeec-cCCccceeEecCCcceeEEecc
Confidence 4556788888763 221111 11 2222 557999999999999999988 455443 34557788899988
Q ss_pred CCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEec--CCeeec
Q 000703 664 PTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRD 741 (1342)
Q Consensus 664 ~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~--g~~v~d 741 (1342)
+...+ ...+|++|+.-| +.++.-. |++..
T Consensus 123 d~~~~-----------------------------------------------~sk~fv~GG~ag-lvL~er~wlgnk~~- 153 (846)
T KOG2066|consen 123 DFSRQ-----------------------------------------------QSKQFVSGGMAG-LVLSERNWLGNKDS- 153 (846)
T ss_pred chhhh-----------------------------------------------hhhheeecCcce-EEEehhhhhcCccc-
Confidence 73221 135677888777 6665432 22210
Q ss_pred cCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCce-eeeccccccEE------EEEEecCCCCCCCCCE
Q 000703 742 FRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHS-SQFSTHREGIR------RIKFSPVVPGDRSRGR 814 (1342)
Q Consensus 742 ~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~~-~~l~~H~~~V~------~v~fSPd~~g~~~~~~ 814 (1342)
. .+-...|.|.++.|.|+++|=++.+| |+|+|+.+++. ..++-....++ .+.|.+. .+
T Consensus 154 ---v----~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-------~~ 218 (846)
T KOG2066|consen 154 ---V----VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-------DR 218 (846)
T ss_pred ---e----eeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-------Ce
Confidence 0 01123478999999999999998887 79999999873 33322223333 3566665 46
Q ss_pred EEEEECCCeEEEEECCCC
Q 000703 815 IAVLFHDNTFSVFDLDSQ 832 (1342)
Q Consensus 815 Las~s~DgtI~IWDl~t~ 832 (1342)
|+.| +..+|+|..++.+
T Consensus 219 LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIG-WGDSVKICSIKKR 235 (846)
T ss_pred EEEe-cCCeEEEEEEecc
Confidence 6666 5567999988843
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.71 E-value=0.46 Score=59.51 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe---------CCCeEEEEECCCCeEE
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN---------GPSVLSLYNTTSASCM 172 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s---------~d~~i~lWd~~tg~~i 172 (1342)
.++..++.+|.|.-.|.++|+.+-.++..++.. .-..+.-+|.-.+ .++..++ .++.|...|..||+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 577788889999999999999887765433200 0000111111111 2343443 3578889999999999
Q ss_pred EEEeC
Q 000703 173 WKYDA 177 (1342)
Q Consensus 173 ~~~~~ 177 (1342)
|++..
T Consensus 189 W~~~~ 193 (488)
T cd00216 189 WRFYT 193 (488)
T ss_pred eEeec
Confidence 99865
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.013 Score=72.75 Aligned_cols=139 Identities=12% Similarity=0.198 Sum_probs=95.2
Q ss_pred CCeEEEEecCCCEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccccc
Q 000703 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHRE 795 (1342)
Q Consensus 717 ~e~la~~~~DgtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~ 795 (1342)
.+.|++|..+|.|++.+..++. +. .+ .|..+ .-+|.+++||+.||+|.|-.+-+.+ .+++ .-+.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~---~~------~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~r 113 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KT---NF------DHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKR 113 (846)
T ss_pred cceeeeccccceEEEEecCCcc-cc---cc------ccccc----ccCCceEEEecCCCcEEEeeccCCccceeE-ecCC
Confidence 4689999999999999998764 21 00 12111 2389999999999999999988876 3333 3467
Q ss_pred cEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC---CCCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeC
Q 000703 796 GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD---SQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1342)
Q Consensus 796 ~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~---t~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~ 872 (1342)
++.+|+++|+..- ..++++++||.-| +-+..-. ....+ ..|...++|.++.|..+ +||=++.
T Consensus 114 piksial~Pd~~~-~~sk~fv~GG~ag-lvL~er~wlgnk~~v-----~l~~~eG~I~~i~W~g~--------lIAWand 178 (846)
T KOG2066|consen 114 PIKSIALHPDFSR-QQSKQFVSGGMAG-LVLSERNWLGNKDSV-----VLSEGEGPIHSIKWRGN--------LIAWAND 178 (846)
T ss_pred cceeEEeccchhh-hhhhheeecCcce-EEEehhhhhcCccce-----eeecCccceEEEEecCc--------EEEEecC
Confidence 9999999998211 1235688887777 6555321 11111 24455589999999864 5666666
Q ss_pred CCcEEEEEccCCcc
Q 000703 873 DSSFRLIEVNTSEK 886 (1342)
Q Consensus 873 DgtIrvWdi~~~~~ 886 (1342)
+| |||+|+.....
T Consensus 179 ~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQR 191 (846)
T ss_pred CC-cEEEeccccce
Confidence 66 69999986543
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.66 E-value=0.36 Score=59.12 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=57.8
Q ss_pred cceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 000703 254 LYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1342)
Q Consensus 254 ~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1342)
..+..++++|+...++.+..||+|.+||...+....+- ..-....+++.|+|..++.+++-|.|.+||+.-+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee----ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34778899999999999999999999999887554321 1122345677899999999999999999998744
No 327
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.61 E-value=0.02 Score=69.80 Aligned_cols=136 Identities=20% Similarity=0.270 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHH--HHHHHHHHHHHHHhcCChhhhHHHHhcCc
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLL--ELAVKVVAANMVRNDRSLSGTHLLCAVGR 1193 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~--~~~~k~~a~~l~~~~~~~~gv~~~~~~g~ 1193 (1342)
.+.++-....|+.-.||+|-+..+ ....|++|+ ..-.+|+ +..+.-+|+.||--...+-+=.++-++-.
T Consensus 606 ~ka~elk~sdgd~laaiqlyika~-----~p~~a~~~a----~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 606 EKAAELKESDGDGLAAIQLYIKAG-----KPAKAARAA----LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred hhhhhhccccCccHHHHHHHHHcC-----CchHHHHhh----cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 356677778888888888777666 444455443 2335555 45667788888876666677789999999
Q ss_pred hHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHH
Q 000703 1194 YQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALR 1262 (1342)
Q Consensus 1194 ~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~ 1262 (1342)
+++|+.|+..-+-..+|+.||+...+ +|+-.+-+.|++||..-. ++..||..|+-++|..+|++.-.
T Consensus 677 ~dkale~fkkgdaf~kaielarfafp-~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 677 FDKALECFKKGDAFGKAIELARFAFP-EEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhhCc-HHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999984 457889999999996544 25788888888888888877544
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.45 Score=53.82 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=109.9
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.|..++|.|+. +.+.|..+..+.|...|. +|+.++.+++.+.. -.-+|++..++ .++++--
T Consensus 23 e~SGLTy~pd~-------------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~--D~EgI~y~g~~---~~vl~~E 83 (248)
T PF06977_consen 23 ELSGLTYNPDT-------------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG--DYEGITYLGNG---RYVLSEE 83 (248)
T ss_dssp -EEEEEEETTT-------------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-S--SEEEEEE-STT---EEEEEET
T ss_pred CccccEEcCCC-------------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC--CceeEEEECCC---EEEEEEc
Confidence 79999999974 568888888899888886 68999988776643 47888887654 6766665
Q ss_pred CCCeEEEEECCCCe------EEEEEe--CC---CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe
Q 000703 157 GPSVLSLYNTTSAS------CMWKYD--AS---PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ 225 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~------~i~~~~--~~---~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~ 225 (1342)
.++.|.+.++...+ .+.++. .. ...+-.++++| ...+|.++-.+.-..++.+.+... ....+..
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~--- 158 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPG-GFDLFVS--- 158 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT--SS--EEE---
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccC-ccceeec---
Confidence 68899888874221 112222 21 22467999999 556666665544444444433100 0001100
Q ss_pred cCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEecCCCcc------
Q 000703 226 TDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCA------ 298 (1342)
Q Consensus 226 ~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~------ 298 (1342)
....+.. . ..+-.....++|.|...+++..+ ..+.|.++| ..|+.+..+.+.++..
T Consensus 159 ----~~~~~~~---~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 159 ----DDQDLDD---D---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp ----E-HHHH----H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS--
T ss_pred ----ccccccc---c---------cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCccccc
Confidence 0111110 0 00111345678999877776666 578899999 6688888888876432
Q ss_pred -ceEEEEEcCCCCEEEEEeCC
Q 000703 299 -KFLDVLADPNNDLLYCAHLD 318 (1342)
Q Consensus 299 -~~~~v~~~pdg~~L~s~~~D 318 (1342)
....+++.++|. ||..++-
T Consensus 222 ~QpEGIa~d~~G~-LYIvsEp 241 (248)
T PF06977_consen 222 PQPEGIAFDPDGN-LYIVSEP 241 (248)
T ss_dssp -SEEEEEE-TT---EEEEETT
T ss_pred CCccEEEECCCCC-EEEEcCC
Confidence 356788888874 5555553
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.38 E-value=1 Score=56.37 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=43.1
Q ss_pred cCCeEEEEEccCCceeEEEecCCCc------cceEEEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 000703 273 FPRELVVFDLQYETPLFSAALPRGC------AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~------~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
.++.|.-.|+++|+.+......... .+...-...-.++.|+.++.||.|...|.++|+.++..
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 4578888999999988776543110 11110001124678999999999999999999977665
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.34 Score=61.24 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=122.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCC-eEEEEEcCC-CcEEEEecCCcccccCcccCEEEEEEcCCC---c-
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGT-VRGLRWLGN-SRLVSFSYSQVNEKSGGYINRLVVTCLRSG---I- 601 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~-V~~l~fs~d-~~llS~s~d~~~~~sg~~~~~i~lwD~~tG---~- 601 (1342)
.+..+|.|+.+|.|-+.+- +-+..+.|..|... |.-+-...+ .-++|.+-|.. | .-..+++||++.- +
T Consensus 34 ~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~----~-np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ----G-NPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCC----C-CceEEEEecccccCCCCC
Confidence 4678999999999888874 33455778888766 443333333 24556665531 1 1127999998532 1
Q ss_pred eeee---EEec--cC-CCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeee----------ccCceEEEEEcCCC
Q 000703 602 NRAF---RVLQ--KP-ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS----------LALPFTVLEWTLPT 665 (1342)
Q Consensus 602 ~~~l---~~l~--g~-h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~----------l~~~vt~l~wsp~~ 665 (1342)
+.++ |... -+ ...|+..+++|.+-+.+|+|+.+|.|-.+. |..+|. .+.|||++.+..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~----GDi~RDrgsr~~~~~~~~~pITgL~~~~d- 182 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK----GDILRDRGSRQDYSHRGKEPITGLALRSD- 182 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc----CcchhccccceeeeccCCCCceeeEEecC-
Confidence 2233 2211 11 467899999999999999999999988763 222221 1135666655422
Q ss_pred CCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCeeeccCCC
Q 000703 666 VPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPK 745 (1342)
Q Consensus 666 ~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~v~d~~~~ 745 (1342)
+..+.|+.....|.+|.+.|+.... ..
T Consensus 183 ---------------------------------------------------~~s~lFv~Tt~~V~~y~l~gr~p~~--~~ 209 (933)
T KOG2114|consen 183 ---------------------------------------------------GKSVLFVATTEQVMLYSLSGRTPSL--KV 209 (933)
T ss_pred ---------------------------------------------------CceeEEEEecceeEEEEecCCCcce--ee
Confidence 1222455566778999998765211 00
Q ss_pred CCCCccccccceEEEEee-cCCE-EEEEeCCCcEEEEECCCCc-eeeec-cccccEEEE
Q 000703 746 WPSSSFISSDGLITAMAY-RLPH-VVMGDRSGNIRWWDVTTGH-SSQFS-THREGIRRI 800 (1342)
Q Consensus 746 ~~~~~~~~~~~~V~~va~-dg~~-LasGs~DgtI~lWDl~tg~-~~~l~-~H~~~V~~v 800 (1342)
.. .|-...+|.++ ++.. +++++. .-|.+||..... +-+|. ||+.....+
T Consensus 210 ld-----~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 210 LD-----NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred ec-----cCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 11 23345788888 5554 444443 469999998654 67776 777554443
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.30 E-value=0.23 Score=62.10 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred ceEeCCCC-eEEEEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 29 SADLSPSG-LLAFAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 29 a~~~s~~g-llA~gs--~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
.+=++||| .+--.+ .+.|.++|..+++.+.++.-... -..++++|+ |.++.
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn------------pd~v~~spd--------------Gk~af 250 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN------------LDNVDTDYD--------------GKYAF 250 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCC------------cccceECCC--------------CCEEE
Confidence 44566777 332222 36778889998877655432221 124566665 56666
Q ss_pred EEeC----CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC----CeE-EEEEe
Q 000703 106 AADR----HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS----ASC-MWKYD 176 (1342)
Q Consensus 106 Sg~~----dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t----g~~-i~~~~ 176 (1342)
+.+. .+++..=+..+...+..|... .+. ++.+++ ++... .++.|.+.|..+ +.. +..+.
T Consensus 251 vTsyNsE~G~tl~em~a~e~d~~vvfni~-----~ie--a~vkdG---K~~~V--~gn~V~VID~~t~~~~~~~v~~yIP 318 (635)
T PRK02888 251 STCYNSEEGVTLAEMMAAERDWVVVFNIA-----RIE--EAVKAG---KFKTI--GGSKVPVVDGRKAANAGSALTRYVP 318 (635)
T ss_pred EeccCcccCcceeeeccccCceEEEEchH-----HHH--HhhhCC---CEEEE--CCCEEEEEECCccccCCcceEEEEE
Confidence 6642 123333333333333333221 011 234444 33332 367899999988 433 33333
Q ss_pred CCCCceEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000703 177 ASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1342)
- ......++++| |++++.+. ..+.++-++|+..... -+.. + + ..+....+ .+.....|.
T Consensus 319 V-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~-~~~~-~---------~-~~~~~vva-----evevGlGPL- 378 (635)
T PRK02888 319 V-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDD-LFDG-K---------I-KPRDAVVA-----EPELGLGPL- 378 (635)
T ss_pred C-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhh-hhhc-c---------C-CccceEEE-----eeccCCCcc-
Confidence 3 55677899999 88887666 4488999998754211 0000 0 0 00000000 111112232
Q ss_pred eEEEEEccCCCceEEEEcCCeEEEEEccC
Q 000703 256 MVKFTFSPHWRHIIFVTFPRELVVFDLQY 284 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~d~~I~iwDl~t 284 (1342)
..+|.++|.-..+.-.|..|..||++.
T Consensus 379 --HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 --HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --eEEECCCCCEEEeEeecceeEEEehHH
Confidence 338999987555556799999999986
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.25 E-value=0.13 Score=62.76 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred EEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcceeeeccCc--eEEEEEcCCCCCCC
Q 000703 592 LVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP--FTVLEWTLPTVPWP 669 (1342)
Q Consensus 592 i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~~l~~l~~~--vt~l~wsp~~~~~~ 669 (1342)
-.+++...++.+.+....-+..+.|.+.+++|+...|+.|..||+|.+||. ..+.-.. ...+ .+.++|+|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~-~~~~t~~-~ka~~~P~~iaWHp~----- 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT-TRGVTLL-AKAEFIPTLIAWHPD----- 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc-CCCeeee-eeecccceEEEEcCC-----
Confidence 445666544433333333346788999999999999999999999999998 3442211 1222 266889865
Q ss_pred CCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEecCCe
Q 000703 670 SQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR 738 (1342)
Q Consensus 670 ~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv~g~~ 738 (1342)
+..|++++..|.+.+||+.-..
T Consensus 311 -----------------------------------------------gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 311 -----------------------------------------------GAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred -----------------------------------------------CcEEEEEcCCceEEEEEeecCc
Confidence 3468889999999999985433
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.23 Score=57.82 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=63.7
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEE
Q 000703 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1342)
Q Consensus 497 l~g~~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~ 576 (1342)
+.++..-|..++|+|- ...++..++-+.+|+|.|+++..+...+..| ..+.+++|.-|.+-..+
T Consensus 189 lp~~g~~IrdlafSp~---------------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPF---------------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred ccccchhhhhhccCcc---------------ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 4456677889999982 2448899999999999999999999999888 78999999776644444
Q ss_pred ecCCcccccCcccCEEEEEEcCCCc
Q 000703 577 SYSQVNEKSGGYINRLVVTCLRSGI 601 (1342)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1342)
+. ..++.|.++|++..+
T Consensus 253 aG--------l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AG--------LQNGMVLVYDMRQPE 269 (463)
T ss_pred Ee--------ccCceEEEEEccCCC
Confidence 43 345689999998644
No 334
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.7 Score=51.87 Aligned_cols=242 Identities=17% Similarity=0.177 Sum_probs=130.7
Q ss_pred CceEeCCCC--eEEEEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 28 GSADLSPSG--LLAFAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 28 ~a~~~s~~g--llA~gs--~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.-+.++|.- -+||+- +.--.|+|+...+..+++...+++ ++--.=.||| +|.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---------HfyGHGvfs~--------------dG~~ 127 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---------HFYGHGVFSP--------------DGRL 127 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---------eeecccccCC--------------CCcE
Confidence 357777764 467775 345678999888888777655542 1222233555 4566
Q ss_pred EEEEeCC-----CcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC------C------------C
Q 000703 104 LAAADRH-----GRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING------P------------S 159 (1342)
Q Consensus 104 LASg~~d-----G~V~vWD~~~g-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~------d------------~ 159 (1342)
|..--.| |.|=|+|.+.+ +.+.++ +.|.- +-..+.|.+|+ ++|+.+.+ | -
T Consensus 128 LYATEndfd~~rGViGvYd~r~~fqrvgE~--~t~Gi-GpHev~lm~DG---rtlvvanGGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGFQRVGEF--STHGI-GPHEVTLMADG---RTLVVANGGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred EEeecCCCCCCCceEEEEecccccceeccc--ccCCc-CcceeEEecCC---cEEEEeCCceecccccCccccchhhcCc
Confidence 6655333 78889999855 334443 44433 55778999987 77777654 1 2
Q ss_pred eEEEEECCCCeEEEEEeCC----CCceEEEEecCCCCCEEEEEeCCCeEEEE-EecCCcccceeeeeEEEecCcchhh--
Q 000703 160 VLSLYNTTSASCMWKYDAS----PEYLSCIRRNPFDARHFCVLGLKGLLLSV-RVLGQKEDEVVVKELQIQTDCTELL-- 232 (1342)
Q Consensus 160 ~i~lWd~~tg~~i~~~~~~----~~~v~~v~fsP~d~~~la~~s~dG~v~~~-d~~~~~~~~~~~k~~~i~~~~~~l~-- 232 (1342)
.+.+-|..+|+.+.+.+.. .-.+.-++.++ ||+|.+= ...+...+-...-.+ ......+.
T Consensus 202 Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~-----------dgtvwfgcQy~G~~~d~ppLvg~--~~~g~~l~~~ 268 (366)
T COG3490 202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-----------DGTVWFGCQYRGPRNDLPPLVGH--FRKGEPLEFL 268 (366)
T ss_pred cEEEEeccccchhhhccCchhhhhcceeeeeeCC-----------CCcEEEEEEeeCCCccCCcceee--ccCCCcCccc
Confidence 5667787788877665442 11233333333 4555431 111110000000000 00000110
Q ss_pred hhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCE
Q 000703 233 KLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDL 311 (1342)
Q Consensus 233 ~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~ 311 (1342)
.+... ......+|+-+++...+-+.++..+ ..+...+||.++|..+...++... ..|+. ...-
T Consensus 269 ~~pee----------~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~da----aGva~--~~~g 332 (366)
T COG3490 269 DLPEE----------QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDA----AGVAA--AKGG 332 (366)
T ss_pred CCCHH----------HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccc----cccee--ccCc
Confidence 00000 0112345777788887766666666 346788999999998765554321 12222 2334
Q ss_pred EEEEeCCCcEEEEEcc
Q 000703 312 LYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 312 L~s~~~DgtI~lW~~~ 327 (1342)
++..+.+|.|+.....
T Consensus 333 f~vssg~G~~~~~s~~ 348 (366)
T COG3490 333 FAVSSGQGRIIFYSRA 348 (366)
T ss_pred eEEecCCceEEecccc
Confidence 5556667888766443
No 335
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.037 Score=64.71 Aligned_cols=203 Identities=19% Similarity=0.226 Sum_probs=128.8
Q ss_pred ecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcC--CCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEEC-
Q 000703 557 VHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR--SGINRAFRVLQKPERAPIRALRASSSGRYLLILFR- 633 (1342)
Q Consensus 557 gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~--tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~- 633 (1342)
-|...|+-+.-+.-.-+++++. |+.++-|--. .|.. .+...+ .|-..|.+++.|-+|..+.+...
T Consensus 7 mhrd~i~hv~~tka~fiiqASl----------DGh~KFWkKs~isGvE-fVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASL----------DGHKKFWKKSRISGVE-FVKHFR-AHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred cccceeeeEeeehhheEEeeec----------chhhhhcCCCCcccee-ehhhhH-HHHHHHHhhhccccceeEeeccCc
Confidence 3666666655444444555544 4577777642 2321 111112 27778999999999999999887
Q ss_pred CCCEEEEeccCCcceeeeccCce--EEEEEcCCCCCCCCCCCCCCccccccCCCCCccCCCcccccccCCCCCcCCCCCC
Q 000703 634 DAPVEVWAMTKNPIMLRSLALPF--TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEG 711 (1342)
Q Consensus 634 D~tIkvWDl~kt~~~l~~l~~~v--t~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~ 711 (1342)
|..+|++|+ .+-.++.-++..+ ..++|.-.. +
T Consensus 75 Dhs~KvfDv-En~DminmiKL~~lPg~a~wv~sk---------G------------------------------------ 108 (558)
T KOG0882|consen 75 DHSVKVFDV-ENFDMINMIKLVDLPGFAEWVTSK---------G------------------------------------ 108 (558)
T ss_pred ccceeEEEe-eccchhhhcccccCCCceEEecCC---------C------------------------------------
Confidence 999999999 5544443222111 123443110 0
Q ss_pred cCCCCCCeEEEE-ecCCCEEEEEecCCeeec-cCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCC---
Q 000703 712 SQDDTSESFAFA-LANGALGVFEVHGRRIRD-FRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT--- 784 (1342)
Q Consensus 712 s~~~~~e~la~~-~~DgtI~lwdv~g~~v~d-~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~t--- 784 (1342)
....++|+. ..+|.+.++|-.+..... +..+ -|...|..+-+ -++..+|.+..|.|..|....
T Consensus 109 ---d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 109 ---DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred ---CeeeeEEeecccCCCcEEECCcCCcCccceecc-------cccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 001233433 467888898875443211 1111 26677888777 678999999999999999873
Q ss_pred ---Cce----------eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000703 785 ---GHS----------SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1342)
Q Consensus 785 ---g~~----------~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~ 833 (1342)
+.+ ..+.--++...++.|+|+ + ..+++...|..|+++++++++
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g----~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--G----AQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccc--c----CcccccCcccEEEEEEeccch
Confidence 111 123445678899999999 4 678888899999999999986
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.90 E-value=5.7 Score=47.57 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE
Q 000703 110 HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC 171 (1342)
Q Consensus 110 dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~ 171 (1342)
.+.+.|+|+.+++..... .... .+....|+|++ +.+|-.. ++.|.+++..++..
T Consensus 22 ~~~y~i~d~~~~~~~~l~---~~~~-~~~~~~~sP~g---~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLT---PPPP-KLQDAKWSPDG---KYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp EEEEEEEETTTTEEEESS----EET-TBSEEEE-SSS---TEEEEEE-TTEEEEESSTTSEE
T ss_pred ceeEEEEecCCCceEECc---CCcc-ccccceeecCC---CeeEEEe-cCceEEEECCCCCe
Confidence 467899999998765532 1124 78999999997 7777666 57899999877743
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.22 Score=60.81 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=80.8
Q ss_pred CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEE--ECCCCeEEEEEeCCCCceEEEEec
Q 000703 111 GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY--NTTSASCMWKYDASPEYLSCIRRN 188 (1342)
Q Consensus 111 G~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW--d~~tg~~i~~~~~~~~~v~~v~fs 188 (1342)
..+.++|+.+|+....+...++.. .-+|+||+ .+++.+...|+...|| |+.+++ +.+++.....-..=.|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~----~P~fspDG--~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~s 290 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG----APAFSPDG--SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWS 290 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC----CccCCCCC--CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCC
Confidence 469999999998766665555433 45799988 3666777777755555 776555 44444322222344688
Q ss_pred CCCCCEEEEEeCC-Ce--EEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 189 PFDARHFCVLGLK-GL--LLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 189 P~d~~~la~~s~d-G~--v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
| |++.++..+.. |. |+..+..+.. ..++... . ..+. .-..||||
T Consensus 291 p-dG~~ivf~Sdr~G~p~I~~~~~~g~~-----------------~~riT~~--~------------~~~~-~p~~SpdG 337 (425)
T COG0823 291 P-DGSKIVFTSDRGGRPQIYLYDLEGSQ-----------------VTRLTFS--G------------GGNS-NPVWSPDG 337 (425)
T ss_pred C-CCCEEEEEeCCCCCcceEEECCCCCc-----------------eeEeecc--C------------CCCc-CccCCCCC
Confidence 8 99999888653 43 3333332211 0111100 0 0000 11679999
Q ss_pred CceEEEEcC-C--eEEEEEccCCce
Q 000703 266 RHIIFVTFP-R--ELVVFDLQYETP 287 (1342)
Q Consensus 266 ~~ll~~~~d-~--~I~iwDl~t~~~ 287 (1342)
+.+++.+.. + .|.+.|+.++..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc
Confidence 999999854 3 377777776653
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=5 Score=48.65 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=124.0
Q ss_pred CCc-EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe--CCCeEEEEECCCCeEEEEEe
Q 000703 100 SHL-LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN--GPSVLSLYNTTSASCMWKYD 176 (1342)
Q Consensus 100 ~g~-~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s--~d~~i~lWd~~tg~~i~~~~ 176 (1342)
.+. ..+....++.|.+-|..+-+....... +. .-..++|+|++. .+-++-. .++++.+-|..+++.+.+..
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~---~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL---GPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeee-cc---CCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 344 455555678999999877777766532 22 346788999872 3334334 37899999999998876643
Q ss_pred CCCCceEEEEecCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000703 177 ASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1342)
-...+ ..++++| ++..+.+. ..++.+.++|..+... .+ . +.. ..+. ....|
T Consensus 158 vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v----~~-~---~~~---~~~~-------------~~~~P-- 209 (381)
T COG3391 158 VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSV----VR-G---SVG---SLVG-------------VGTGP-- 209 (381)
T ss_pred cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcce----ec-c---ccc---cccc-------------cCCCC--
Confidence 32234 7899999 77765555 5678888887544211 00 0 000 0000 00011
Q ss_pred eEEEEEccCCCceEEEEcC---CeEEEEEccCCceeEE-EecCCCccceEEEEEcCCCCEEEEEeCC-CcEEEEEccCCc
Q 000703 256 MVKFTFSPHWRHIIFVTFP---RELVVFDLQYETPLFS-AALPRGCAKFLDVLADPNNDLLYCAHLD-GKLSIWRRKEGE 330 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~d---~~I~iwDl~t~~~l~~-~~l~~~~~~~~~v~~~pdg~~L~s~~~D-gtI~lW~~~~g~ 330 (1342)
..+.++|||..+...-.. +.+.+.|..++..... .+.... ....+..+|+|..+|..+.. +++.+-|..+..
T Consensus 210 -~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 210 -AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred -ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 235899999866655543 5999999999887654 333322 33457889999999998666 888888877654
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.62 E-value=0.025 Score=41.77 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=32.7
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe
Q 000703 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD 117 (1342)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD 117 (1342)
++.+..+..|.. .|++++|.|+ +.++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~-----------~i~~~~~~~~--------------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-----------PVTSVAFSPD--------------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-----------ceeEEEECCC--------------CCEEEEecCCCeEEEcC
Confidence 355667778887 8999999975 36899999999999997
No 340
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.62 E-value=9.7 Score=48.21 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=45.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC-CCeeEEEEeecCCCCcEEEEEe-----CCCeEEEEECCCCeEEEE
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK-LGIQDLCWIVSKPDSFVLAAIN-----GPSVLSLYNTTSASCMWK 174 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~-~~V~~l~wsp~~~~~~lLas~s-----~d~~i~lWd~~tg~~i~~ 174 (1342)
+.++..++.||.+.-.|..+|+.+-.+....+.. ..+.+---.-++ .+++..+ .++.|.-.|..||+.+|+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g---~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG---KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC---EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 3467778889999999999999876654322211 012110001122 4444322 268999999999999998
Q ss_pred EeC
Q 000703 175 YDA 177 (1342)
Q Consensus 175 ~~~ 177 (1342)
+..
T Consensus 197 ~~~ 199 (527)
T TIGR03075 197 RYT 199 (527)
T ss_pred ccC
Confidence 654
No 341
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.04 Score=64.45 Aligned_cols=221 Identities=14% Similarity=0.087 Sum_probs=134.2
Q ss_pred CCCCCCceEeCCCCeEEEEc-CCeEEEEeCCCcc---eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 23 SRNNFGSADLSPSGLLAFAS-GSSISILDSRSLQ---LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 23 ~~~~~~a~~~s~~gllA~gs-~~~V~v~d~~s~~---~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
|++.+.-+..+....+..++ ++++..|-+..-. .+..+..|-. .|.+++-|-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-----------~I~sl~~S~------------- 63 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-----------VILSLAVSY------------- 63 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-----------HHHhhhccc-------------
Confidence 66777777777777777776 5789999875422 2333444554 455555444
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCC-cEEEEE-eCCCeEEEEECCCCe--EEE
Q 000703 99 SSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAI-NGPSVLSLYNTTSAS--CMW 173 (1342)
Q Consensus 99 p~g~~LASg~~-dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~-s~d~~i~lWd~~tg~--~i~ 173 (1342)
+|.++.|+.. |..+++.|+.+-..+.-+.+..-.+ .++|.....+. ..||+. -.++.+.++|-..+- ...
T Consensus 64 -dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 64 -DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred -cceeEeeccCcccceeEEEeeccchhhhcccccCCC----ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 4688999776 9999999998765554332322122 23454433221 234433 356788899865433 234
Q ss_pred EEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecC--CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000703 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG--QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1342)
Q Consensus 174 ~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~--~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1342)
....|..+|.++.+.| -+..+.+....|.|--|...+ +-+......++. ++ ..+.-. ..
T Consensus 139 fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K--~e-TdLy~f---------------~K 199 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK--HE-TDLYGF---------------PK 199 (558)
T ss_pred ecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCcccccccccc--cc-chhhcc---------------cc
Confidence 4556788999999999 677777777678888885432 001000000000 00 001000 00
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEE
Q 000703 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSA 291 (1342)
Q Consensus 252 ~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~ 291 (1342)
......++.|||+|..+...+.|+.|++++.++|..+..+
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 1122346799999999999999999999999999877544
No 342
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.57 E-value=0.34 Score=59.58 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=116.8
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHH--HHHHHHHHH--
Q 000703 1099 AAERITWHEK-LEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLL--ELAVKVVAA-- 1173 (1342)
Q Consensus 1099 ~~e~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~--~~~~k~~a~-- 1173 (1342)
+-|+..+.+. +-.+.. -..|.++-.-|+.-+||+.||..+-|++.--..+.+...-|+-.|..++ +.-+.+|.+
T Consensus 1142 eyek~~~k~gargvd~f-vaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~ 1220 (1636)
T KOG3616|consen 1142 EYEKEALKKGARGVDGF-VAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAG 1220 (1636)
T ss_pred HHHHHHHhccccccHHH-HHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcc
Confidence 4455555554 334444 4557899999999999999999987775544444444334444444444 232344433
Q ss_pred -HHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHH-HHHHHHHHhhhccccc-------HHHH
Q 000703 1174 -NMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYA-RVLQRWADHVHHVEHN-------IWRA 1244 (1342)
Q Consensus 1174 -~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~-~~~~~~~~~l~~~~~~-------~~~a 1244 (1342)
.|+..|+-+.+..+|.+-|..++|++.+-...+|.+|-.+||.-+ +|.. .+=+-|-+.|.+..+- .-.|
T Consensus 1221 ~al~~~~~~e~aael~l~f~~~keaida~~~~eewakakqvake~~--p~~~~~idk~yke~lknegkl~eli~vdviaa 1298 (1636)
T KOG3616|consen 1221 GALDEAGCHEAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVAKELD--PEMEDEIDKHYKEFLKNEGKLDELIDVDVIAA 1298 (1636)
T ss_pred hhhhcccccHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHhccCccccccchhHHHH
Confidence 456677778888999999999999999999999999999999887 3333 4555566666554421 1389
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCc
Q 000703 1245 LILYVAAGGLQEALAALREAQHP 1267 (1342)
Q Consensus 1245 ~~~~~~~g~~~~~~~~l~~~~~~ 1267 (1342)
|.+|+-.+++.+++..-.+..|.
T Consensus 1299 idl~ien~qwdk~idtak~qnyk 1321 (1636)
T KOG3616|consen 1299 IDLMIENDQWDKAIDTAKKQNYK 1321 (1636)
T ss_pred HHHHHhcccHHHHHHHHHhcccH
Confidence 99999999999999987654443
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.56 E-value=3.1 Score=50.96 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=42.2
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCC
Q 000703 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1342)
Q Consensus 255 ~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1342)
.+..|++||+|+.++....++.+.|....-.+.+..+.+.. .....++.+|.+
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~ 270 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGN 270 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECC
Confidence 48889999999999999999999999988777777776552 234567778754
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.55 E-value=0.0089 Score=72.41 Aligned_cols=143 Identities=16% Similarity=0.314 Sum_probs=82.7
Q ss_pred cCCCEEEEEecCC-ee-eccCCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccccccEEEE
Q 000703 725 ANGALGVFEVHGR-RI-RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRI 800 (1342)
Q Consensus 725 ~DgtI~lwdv~g~-~v-~d~~~~~~~~~~~~~~~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v 800 (1342)
.|..+.+||+... .+ +. ..++.++. .....+++| |-+++.+|...+.|+++|++....+.-.-.+..|..+
T Consensus 127 nds~~~Iwdi~s~ltvPke-~~~fs~~~----l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~ 201 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKE-SPLFSSST----LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGI 201 (783)
T ss_pred ccCCccceecccccCCCcc-cccccccc----ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccc
Confidence 4667899999543 11 11 12222211 122457778 6678999999999999999743211111123455566
Q ss_pred EEecCCCCCCCCCEEEEEECCCeEEEEE-CCCCCcccccccCCCC-CCCcEEEEEEeCCCCCCCCCeEEEEEeC-CCcEE
Q 000703 801 KFSPVVPGDRSRGRIAVLFHDNTFSVFD-LDSQDPLANSLLQPQF-PGTLVLELDWLPTRTDKNDPLVLCIAGA-DSSFR 877 (1342)
Q Consensus 801 ~fSPd~~g~~~~~~Las~s~DgtI~IWD-l~t~~~l~~~l~~gh~-~~~~V~~l~ws~d~~~~g~~~~L~s~s~-DgtIr 877 (1342)
...|=.+ +++++- .|+.|-+|| ...-+-....+.+... --..+..++|+|.+ .. .|++... .++||
T Consensus 202 tVdp~~~-----nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----tg-lla~l~RdS~tIr 270 (783)
T KOG1008|consen 202 TVDPFSP-----NYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----TG-LLAVLSRDSITIR 270 (783)
T ss_pred eecCCCC-----Cceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----cc-hhhhhccCcceEE
Confidence 6667323 467665 599999999 4433322112111111 01348999999972 22 3455554 46799
Q ss_pred EEEccC
Q 000703 878 LIEVNT 883 (1342)
Q Consensus 878 vWdi~~ 883 (1342)
++|+..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 999863
No 345
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.85 Score=57.87 Aligned_cols=201 Identities=13% Similarity=0.177 Sum_probs=117.7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCC-eeEEEEeecCCCCcEEEEEeCCC-----eEEEEECCC---C
Q 000703 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG-IQDLCWIVSKPDSFVLAAINGPS-----VLSLYNTTS---A 169 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~-V~~l~wsp~~~~~~lLas~s~d~-----~i~lWd~~t---g 169 (1342)
+++..+|-|+.+|.|.+.+-. -+.++.| +.+.. . |+.| |.-++ ..+|++.+.|. .|++||+.. +
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~f--qa~~~-siv~~L-~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGF--QAYEQ-SIVQFL-YILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehh--eecch-hhhhHh-hcccC--ceEEEEEeecCCCCceEEEEecccccCCC
Confidence 346789999999999888742 2333443 44444 4 3333 33332 26888877653 699999762 2
Q ss_pred ---eEE---EEE--eCC--CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000703 170 ---SCM---WKY--DAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1342)
Q Consensus 170 ---~~i---~~~--~~~--~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1342)
.++ ..+ ..+ +.++.+++.+- |-..+|.|-.+|.|.++. |+...+. +-+..+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~--GDi~RDr-gsr~~~--------------- 166 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYK--GDILRDR-GSRQDY--------------- 166 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEc--Ccchhcc-ccceee---------------
Confidence 233 111 222 45778889988 778888888899998863 2211000 001100
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCC
Q 000703 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1342)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1342)
+......|..++|--|++.++++++...|.+|.+. |+......+..++.+..-..+++-...++|++..
T Consensus 167 ---------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e- 235 (933)
T KOG2114|consen 167 ---------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE- 235 (933)
T ss_pred ---------eccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCc-
Confidence 01112237778999999998999999999999998 5542222233333444334444433336666543
Q ss_pred cEEEEEccCCceeeeEe
Q 000703 320 KLSIWRRKEGEQVHVMC 336 (1342)
Q Consensus 320 tI~lW~~~~g~~~~~~~ 336 (1342)
.|.+++......-.+++
T Consensus 236 ~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEcCCCcceeeeec
Confidence 58888876322224443
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.49 E-value=4 Score=49.59 Aligned_cols=230 Identities=16% Similarity=0.138 Sum_probs=114.0
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEE-------------------------Eec---
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVL-------------------------WID--- 128 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~-------------------------~l~--- 128 (1342)
.|+.|.|+++. .-||.|-..|.|.||.+...+.-. .+.
T Consensus 3 ~v~~vs~a~~t--------------~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPET--------------LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETTT--------------TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG-
T ss_pred eEEEEEecCCC--------------ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC
Confidence 68999999873 569999999999998763321110 000
Q ss_pred -------------CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC--------CCCceEEEEe
Q 000703 129 -------------PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA--------SPEYLSCIRR 187 (1342)
Q Consensus 129 -------------~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~--------~~~~v~~v~f 187 (1342)
++...+ +|++++-|.-| ++|.+..+|.+.|-|.+....+.+-.. ..+.++++.|
T Consensus 69 ~~~~~~gf~P~~l~~~~~g-~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQG-PVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -TT-SEEEEEEEEE---S--SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred CcccccccCchhheeccCC-cEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence 111234 89999987554 899999999999999988877766322 1236677777
Q ss_pred cC-------CCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe-cCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000703 188 NP-------FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ-TDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1342)
Q Consensus 188 sP-------~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~-~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1342)
.. +.+-.+.++...|.+.++.+.+........+-.... ...+....+. ..+..+|.+..+... .+..+
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~-~i~~~~G~~a~At~~---~~~~l 219 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII-PINADTGESALATIS---AMQGL 219 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE-EEETTT--B-B-BHH---HHHGG
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE-EEECCCCCcccCchh---Hhhcc
Confidence 52 222466777888999999876522211111111100 0000000000 000111100000000 00000
Q ss_pred EEccCCCceEEEEcCCeEEEEEccCCceeEEEecCCCc-cceEEEEE---cCCCCEEEEEeCCCcEEEEEccCCc
Q 000703 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLA---DPNNDLLYCAHLDGKLSIWRRKEGE 330 (1342)
Q Consensus 260 aFSpdg~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~---~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1342)
.=...-..++.+..++.|+|+.+.+.+..+..- ..+. .....++. ...+..|+|...||.|++..+-.-+
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 000001245677789999999999887765443 2110 11112221 1246689999999999999886543
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.042 Score=66.94 Aligned_cols=92 Identities=25% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEE-EEEEecCCCccccCCCCCCCCC
Q 000703 25 NNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVT-AVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs-~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt-~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
.++--+.|+|.- |||++. .+.|.+.... .|.+-+++-|.. .|+ +++|-|| |
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-----------~v~~sL~W~~D--------------G 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-----------NVTASLCWRPD--------------G 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC-----------ccceeeeecCC--------------C
Confidence 356679999985 999984 5778888776 788888988876 677 9999987 5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEee
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIV 144 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp 144 (1342)
.+||.|-.||+|+|-|+.+|..+..+.. .-.. +|..+-|.+
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~~-s~e~-~is~~~w~~ 115 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFLF-SVET-DISKGIWDR 115 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceecccc-cccc-chheeeccc
Confidence 8899999999999999999987776321 1122 566666653
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.42 E-value=5.1 Score=47.83 Aligned_cols=229 Identities=13% Similarity=0.073 Sum_probs=110.3
Q ss_pred CCceEeCCCC-eEEEEc----CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCC
Q 000703 27 FGSADLSPSG-LLAFAS----GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs----~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1342)
+.-=.|.++| .|.|++ +..+.+.|..+++..|.=.+... ..-...++|+ +
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----------~~~g~~~s~~--------------~ 92 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----------NTFGGFLSPD--------------D 92 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------------TTT-EE-TT--------------S
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----------CccceEEecC--------------C
Confidence 3445789999 555543 35788999999888774333222 1112334454 3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe----------------------CCC
Q 000703 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN----------------------GPS 159 (1342)
Q Consensus 102 ~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s----------------------~d~ 159 (1342)
+.|.=...+..++--|+.+++....+..+. . -+....|+.+.+. ..++.+- ..+
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~-~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPD--D-WKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--T--T-EEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCc--c-cccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 444433344578888888887655554443 2 4555788876543 4444331 113
Q ss_pred eEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEe--C-CC-eEEEEEecCCcccceeeeeEEEecCcchhhhhh
Q 000703 160 VLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG--L-KG-LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLE 235 (1342)
Q Consensus 160 ~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s--~-dG-~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~ 235 (1342)
.|.-=|+.||+..-.+.- ..-+.-+.|+|+|+..|..|= . +. .-++| .|.++++....+.
T Consensus 169 ~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW---------------~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIW---------------TINTDGSNVKKVH 232 (386)
T ss_dssp EEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEE---------------EEETTS---EESS
T ss_pred eEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEE---------------EEEcCCCcceeee
Confidence 555558888875433332 456678999999988887762 1 11 11233 2333333322222
Q ss_pred hhhccccCCCCCCCCcCccce-EEEEEccCCCceEEEEc-----CCeEEEEEccCCceeEEEecCCCccceEEEEEcCCC
Q 000703 236 RELSAGAASLSPASGLFPLYM-VKFTFSPHWRHIIFVTF-----PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN 309 (1342)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v-~~~aFSpdg~~ll~~~~-----d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg 309 (1342)
.+ .+.++ --=-|+|||..+.+.+. ++.|.-.|+++++.......+ .-.-+..++||
T Consensus 233 ~~--------------~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg 294 (386)
T PF14583_consen 233 RR--------------MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDG 294 (386)
T ss_dssp -----------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTS
T ss_pred cC--------------CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCC
Confidence 21 01111 11168999999999875 557888999998654333322 23345667999
Q ss_pred CEEEEEeCC
Q 000703 310 DLLYCAHLD 318 (1342)
Q Consensus 310 ~~L~s~~~D 318 (1342)
++++-=+.|
T Consensus 295 ~L~vGDG~d 303 (386)
T PF14583_consen 295 KLFVGDGGD 303 (386)
T ss_dssp SEEEEEE--
T ss_pred CEEEecCCC
Confidence 987654444
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.37 E-value=0.0097 Score=72.10 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=99.8
Q ss_pred CCCceEeCCCC---eEEEEc-CCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCC
Q 000703 26 NFGSADLSPSG---LLAFAS-GSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1342)
Q Consensus 26 ~~~a~~~s~~g---llA~gs-~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1342)
++.|++|+-+. ++|.|. .+.|.+-..+... ---+.++|.. .-|+++|.+-+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar-----------~Ct~lAwneLD------------ 114 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYAR-----------PCTSLAWNELD------------ 114 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccc-----------ccccccccccc------------
Confidence 46688887542 677774 3566665443321 1223455554 78999999853
Q ss_pred CCcEEEEE----eCCCcEEEEeCCCC--eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 000703 100 SHLLLAAA----DRHGRVALLDFRLR--SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1342)
Q Consensus 100 ~g~~LASg----~~dG~V~vWD~~~g--~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1342)
...||.| ..|--+.|||+.++ .+.....+.+....+...+||..+. ++|.+|.....+.+.|++- .+..
T Consensus 115 -tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~---klvlaGm~sr~~~ifdlRq-s~~~ 189 (783)
T KOG1008|consen 115 -TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT---KLVLAGMTSRSVHIFDLRQ-SLDS 189 (783)
T ss_pred -HHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc---chhhcccccchhhhhhhhh-hhhh
Confidence 3567776 34567899999887 2221111222122267789998665 7888888888999999861 1222
Q ss_pred EEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 174 ~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
.....+..+..+..+||.+.++|.-. ||.|-+||
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 22232446677889999999999987 89999998
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.19 E-value=2.3 Score=52.34 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=79.6
Q ss_pred HHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHHHhcCchHHH
Q 000703 1118 RVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEA 1197 (1342)
Q Consensus 1118 ~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~~~~g~~~~a 1197 (1342)
.-+-+|.+|+++.|.+..-+.+ + ++.|+. +|.... ..|+++-|
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~-~-------------------~~~W~~----Lg~~AL-------------~~g~~~lA 366 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD-D-------------------PEKWKQ----LGDEAL-------------RQGNIELA 366 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS-T-------------------HHHHHH----HHHHHH-------------HTTBHHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC-c-------------------HHHHHH----HHHHHH-------------HcCCHHHH
Confidence 3488999999999999988877 2 234443 444333 34566667
Q ss_pred HHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHHH
Q 000703 1198 CSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLA 1276 (1342)
Q Consensus 1198 ~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~~~~~~~aa~~~~~ 1276 (1342)
-.++|..+.|..-+.|....= + .+-|++.++--...+ ..--|..+++-+|+..+-+++|.+.+++-+||+|...
T Consensus 367 e~c~~k~~d~~~L~lLy~~~g--~--~~~L~kl~~~a~~~~-~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~t 440 (443)
T PF04053_consen 367 EECYQKAKDFSGLLLLYSSTG--D--REKLSKLAKIAEERG-DINIAFQAALLLGDVEECVDLLIETGRLPEAALFART 440 (443)
T ss_dssp HHHHHHCT-HHHHHHHHHHCT-----HHHHHHHHHHHHHTT--HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhhcCccccHHHHHHhC--C--HHHHHHHHHHHHHcc-CHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHh
Confidence 777777799988887776653 2 456666664433222 2345778888899999999999999999999999764
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.19 E-value=6.7 Score=43.72 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=86.8
Q ss_pred eEEEEcCC-eEEEEeCCCcceeE--eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcE
Q 000703 37 LLAFASGS-SISILDSRSLQLIS--TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRV 113 (1342)
Q Consensus 37 llA~gs~~-~V~v~d~~s~~~~~--~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V 113 (1342)
++..|+++ .+.-.|+.+|..+- .|.+ +|.+-+.- -|.+++-|...|.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~--------------RiE~sa~v---------------vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGV--------------RIECSAIV---------------VGDFVVLGCYSGGL 75 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCc--------------eeeeeeEE---------------ECCEEEEEEccCcE
Confidence 56667875 45568999988753 2222 22222111 15679999999999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCC
Q 000703 114 ALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDAR 193 (1342)
Q Consensus 114 ~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~ 193 (1342)
.+-++.+|.....|..-+.- .++.. ..+++ .++-.++.|+++..-|..+..++|+..-+...+.+=+.+|-|+.
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k~~a~-~d~~~---glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--KVRAQ-CDFDG---GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS 149 (354)
T ss_pred EEEEecchhheeeeeehhhh--ccceE-EcCCC---ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce
Confidence 99999999776665332211 23222 22333 78888999999999999999999997654444445556774544
Q ss_pred EEEEEeCCCeEEEE
Q 000703 194 HFCVLGLKGLLLSV 207 (1342)
Q Consensus 194 ~la~~s~dG~v~~~ 207 (1342)
..++ ...|.++..
T Consensus 150 ly~a-~t~G~vlav 162 (354)
T KOG4649|consen 150 LYAA-ITAGAVLAV 162 (354)
T ss_pred EEEE-eccceEEEE
Confidence 4444 344666654
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.14 E-value=2.8 Score=49.34 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=100.7
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeC----------CCcE
Q 000703 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR----------HGRV 113 (1342)
Q Consensus 44 ~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~----------dG~V 113 (1342)
+.|+|.|+.+.+.+.+++.... ..|++++-..-... ....-.+|+.|.. .|+|
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~----------E~~~s~~~~~l~~~-------~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN----------EHVTSLCSVKLKGD-------STGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT----------EEEEEEEEEEETTS----------SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC----------ceEEEEEEEEEcCc-------cccccCEEEEEecccccccccccCcEE
Confidence 5799999999998876554433 25666554432100 0011357777742 2999
Q ss_pred EEEeCCCC-----e--EEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC--ceEE
Q 000703 114 ALLDFRLR-----S--VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE--YLSC 184 (1342)
Q Consensus 114 ~vWD~~~g-----~--~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~--~v~~ 184 (1342)
.+.++... + .+...+ ..+ +|.+|+-. .+ .++++. .+.|.+|++...+.+........ .+.+
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~~~---~~g-~V~ai~~~-~~---~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHSTE---VKG-PVTAICSF-NG---RLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEECSS-----EEEEEEEEE---ESS--EEEEEEE-TT---EEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred EEEEEEcccccceEEEEEEEEe---ecC-cceEhhhh-CC---EEEEee--cCEEEEEEccCcccchhhheecceEEEEE
Confidence 99999884 2 222222 234 89998755 22 555444 37899999987762222222122 4444
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC
Q 000703 185 IRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH 264 (1342)
Q Consensus 185 v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpd 264 (1342)
+..- +..++++.....+.++.+... .+++. .+.+ ...+..+.++.|-+|
T Consensus 135 l~~~---~~~I~vgD~~~sv~~~~~~~~------~~~l~---------~va~-------------d~~~~~v~~~~~l~d 183 (321)
T PF03178_consen 135 LSVF---KNYILVGDAMKSVSLLRYDEE------NNKLI---------LVAR-------------DYQPRWVTAAEFLVD 183 (321)
T ss_dssp EEEE---TTEEEEEESSSSEEEEEEETT------TE-EE---------EEEE-------------ESS-BEEEEEEEE-S
T ss_pred Eecc---ccEEEEEEcccCEEEEEEEcc------CCEEE---------EEEe-------------cCCCccEEEEEEecC
Confidence 4432 347777766555555443321 01110 0111 012346788899988
Q ss_pred CCceEEEEcCCeEEEEEcc
Q 000703 265 WRHIIFVTFPRELVVFDLQ 283 (1342)
Q Consensus 265 g~~ll~~~~d~~I~iwDl~ 283 (1342)
+..++.+-.++.|.++...
T Consensus 184 ~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-
T ss_pred CcEEEEEcCCCeEEEEEEC
Confidence 7777777789999998886
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.97 E-value=2.7 Score=50.33 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=60.0
Q ss_pred CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccC------
Q 000703 538 SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKP------ 611 (1342)
Q Consensus 538 DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~------ 611 (1342)
.+.+.|||+++++....... ...+....|+|+|+.+++..+ +.|.+.+..++..+.+.. .|.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~~~~lT~-dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQETQLTT-DGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSEEEESES---TTTEEES
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec----------CceEEEECCCCCeEEecc-ccceeEEcC
Confidence 46899999999876544333 677889999999998887664 488999888876444432 110
Q ss_pred --------C-CCCeEEEEEcCCCCEEEEEE-CCCCEEEEec
Q 000703 612 --------E-RAPIRALRASSSGRYLLILF-RDAPVEVWAM 642 (1342)
Q Consensus 612 --------h-~~~I~~i~~Spdg~~Las~s-~D~tIkvWDl 642 (1342)
+ -..-.++.|||||++||... .+..|+.+.+
T Consensus 90 ~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 0 12235788999999998764 3444555544
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.97 E-value=7.2 Score=44.59 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE-----
Q 000703 100 SHLLLAAADRHGRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW----- 173 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~~~g-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~----- 173 (1342)
.+.+|+.|..+| +.+++.... ....... .. +|..|...++- ++|++.+ |+.|.++++.+-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~-~I~ql~vl~~~---~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LS-SITQLSVLPEL---NLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee----cc-eEEEEEEeccc---CEEEEEc-CCccEEEEchhhccccccccc
Confidence 578999999998 889998333 3333321 23 69999999876 6677666 5999999976433222
Q ss_pred ----------EEeCCCCceEEEE-ecCC-CCCEEEEEeCCCeEEEEEecC
Q 000703 174 ----------KYDASPEYLSCIR-RNPF-DARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 174 ----------~~~~~~~~v~~v~-fsP~-d~~~la~~s~dG~v~~~d~~~ 211 (1342)
.+.. ...+..++ -... ..++|+++.. ..|.++.+..
T Consensus 76 ~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~ 123 (275)
T PF00780_consen 76 AFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWND 123 (275)
T ss_pred cccccccccccccc-cCCeeEEeeccccccceEEEEEEC-CEEEEEEEEC
Confidence 1111 22344444 1222 3455555544 4787877654
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.83 E-value=3.8 Score=51.65 Aligned_cols=237 Identities=12% Similarity=0.022 Sum_probs=130.5
Q ss_pred CCeEEEEcC---CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEe--cCCCccccCC---CCCCCCCcEEEE
Q 000703 35 SGLLAFASG---SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWI--PITLRCDLLS---TEPGSSHLLLAA 106 (1342)
Q Consensus 35 ~gllA~gs~---~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s--p~~~~~~~~s---~~~~p~g~~LAS 106 (1342)
||-.+|-.+ ..|...|...+++-+.++.+.. ..+..++|- |.-.+-...+ .-..|+|..|..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~----------~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNV----------QGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCc----------cCccccCccccCCccEEEeCcccccccCCCCCEeec
Confidence 565666554 4677788888877666554443 123333332 2211100000 012457766643
Q ss_pred Ee-CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000703 107 AD-RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCI 185 (1342)
Q Consensus 107 g~-~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v 185 (1342)
.+ ..+.+-+.|..+.+...++...+. -..+++++++ .++.+.+. |...|..+..+.. .+.-..+
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdgn----pd~v~~spdG---k~afvTsy-------NsE~G~tl~em~a-~e~d~~v 274 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDGN----LDNVDTDYDG---KYAFSTCY-------NSEEGVTLAEMMA-AERDWVV 274 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCCC----cccceECCCC---CEEEEecc-------CcccCcceeeecc-ccCceEE
Confidence 33 346777889988877766655432 2445788876 56655542 2333433333332 1222455
Q ss_pred EecCC-------CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000703 186 RRNPF-------DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1342)
Q Consensus 186 ~fsP~-------d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1342)
.|++- |++.... .++.|.++|......... .-..+|. .+.....
T Consensus 275 vfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIP--------------------------VGKsPHG 325 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVP--------------------------VPKNPHG 325 (635)
T ss_pred EEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEE--------------------------CCCCccc
Confidence 56552 4444433 245677776432100000 0011110 0112335
Q ss_pred EEEccCCCceEEEE-cCCeEEEEEccCCce------------eEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000703 259 FTFSPHWRHIIFVT-FPRELVVFDLQYETP------------LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1342)
Q Consensus 259 ~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~------------l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1342)
|.+||||++++.++ .+.+|.|.|++..+. ...+.+ |.+| +...|.++|....|...|..|-.|+
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGP-LHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGP-LHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCc-ceEEECCCCCEEEeEeecceeEEEe
Confidence 68999999988877 689999999998553 444443 2333 3466788888888899999999999
Q ss_pred ccC
Q 000703 326 RKE 328 (1342)
Q Consensus 326 ~~~ 328 (1342)
+.+
T Consensus 403 ~~~ 405 (635)
T PRK02888 403 IEA 405 (635)
T ss_pred hHH
Confidence 864
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.73 E-value=5.2 Score=45.35 Aligned_cols=210 Identities=18% Similarity=0.235 Sum_probs=105.3
Q ss_pred cccCCCCCCCCCCceEeCCC-C-eEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCcccc
Q 000703 16 FMLPGPPSRNNFGSADLSPS-G-LLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1342)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~-g-llA~gs~-~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1342)
+.|||-. +++..+.|+|+ + |+|.... ..|...|. +|+++..++.... ...-.|++.-+
T Consensus 15 ~~l~g~~--~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----------~D~EgI~y~g~------ 75 (248)
T PF06977_consen 15 KPLPGIL--DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----------GDYEGITYLGN------ 75 (248)
T ss_dssp EE-TT----S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----------SSEEEEEE-ST------
T ss_pred eECCCcc--CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----------CCceeEEEECC------
Confidence 5788854 46999999997 5 6666544 57777785 5888776554321 15778888643
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEec--CC-CCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEE
Q 000703 93 LSTEPGSSHLLLAAADRHGRVALLDFRLR------SVVLWID--PD-PNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSL 163 (1342)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~V~vWD~~~g------~~~~~l~--~~-~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1342)
+.++++--+++++.+.++... .....+. .. .+.+ ++-+|||.+.+. ++++ +-......|
T Consensus 76 --------~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~-G~EGla~D~~~~--~L~v-~kE~~P~~l 143 (248)
T PF06977_consen 76 --------GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNK-GFEGLAYDPKTN--RLFV-AKERKPKRL 143 (248)
T ss_dssp --------TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS---EEEEEETTTT--EEEE-EEESSSEEE
T ss_pred --------CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCc-ceEEEEEcCCCC--EEEE-EeCCCChhh
Confidence 566666667899988888321 1122232 22 2334 799999999762 4554 444555556
Q ss_pred EECCC---CeEEE--EE---e---CCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhh
Q 000703 164 YNTTS---ASCMW--KY---D---ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELL 232 (1342)
Q Consensus 164 Wd~~t---g~~i~--~~---~---~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~ 232 (1342)
+.+.. +..+. .. . .....++.++++|-.+..++....+..|+.+|..++. .+.+.+..+ .+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~-----~~~~~L~~g---~~ 215 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRV-----VSSLSLDRG---FH 215 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--E-----EEEEE-STT---GG
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCE-----EEEEEeCCc---cc
Confidence 55542 21111 11 1 1133568999999655666666666777777754431 122221100 00
Q ss_pred hhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEE
Q 000703 233 KLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVF 280 (1342)
Q Consensus 233 ~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iw 280 (1342)
-|.+. .+ .---++|.|+| +|..++.++..++|
T Consensus 216 gl~~~--------------~~-QpEGIa~d~~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 216 GLSKD--------------IP-QPEGIAFDPDG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp G-SS------------------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred Ccccc--------------cC-CccEEEECCCC-CEEEEcCCceEEEe
Confidence 00000 00 12346999998 67777788877665
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.69 E-value=9.1 Score=42.75 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=74.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
..++.-|+..|+++--|..+|...-+-.+ + . .|.+-+..- + ++++.+...+.+.+-+..||..+|++.. -+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g--~-RiE~sa~vv-g---dfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-G--V-RIECSAIVV-G---DFVVLGCYSGGLYFLCVKTGSQIWNFVI-LE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-C--c-eeeeeeEEE-C---CEEEEEEccCcEEEEEecchhheeeeee-hh
Confidence 36788899999999999999987654322 1 2 454444442 3 5677787888999999999999999876 45
Q ss_pred ceEE-EEecCCCCCEEEEEeCCCeEEEEEecC
Q 000703 181 YLSC-IRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 181 ~v~~-v~fsP~d~~~la~~s~dG~v~~~d~~~ 211 (1342)
.|.+ -..++ |+..+-.+++|++.+..|...
T Consensus 94 ~vk~~a~~d~-~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 94 TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhccceEEcC-CCceEEEecCCCcEEEecccc
Confidence 5543 33455 889999999999999988644
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.62 E-value=0.082 Score=38.85 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=28.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCCEEEEe
Q 000703 612 ERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1342)
Q Consensus 612 h~~~I~~i~~Spdg~~Las~s~D~tIkvWD 641 (1342)
|...|.++.|+++++++++++.|+.+++||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 677899999999999999999999999996
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.14 Score=62.70 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=72.7
Q ss_pred CcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-EEEEeecCCCCcEEEE
Q 000703 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-DLCWIVSKPDSFVLAA 154 (1342)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~-~l~wsp~~~~~~lLas 154 (1342)
..|.-+-|+|. -.++|.+-.+|.|.+..+. .+.+-++++++ . .|+ ++||-||| ++||.
T Consensus 21 ~~i~~~ewnP~--------------~dLiA~~t~~gelli~R~n-~qRlwtip~p~--~-~v~~sL~W~~DG---kllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPK--------------MDLIATRTEKGELLIHRLN-WQRLWTIPIPG--E-NVTASLCWRPDG---KLLAV 79 (665)
T ss_pred cceEEEEEcCc--------------cchhheeccCCcEEEEEec-cceeEeccCCC--C-ccceeeeecCCC---CEEEE
Confidence 37888999986 3679999999999999987 56666664433 4 555 99999987 99999
Q ss_pred EeCCCeEEEEECCCCeEEEEEeCC-CCceEEEEecC
Q 000703 155 INGPSVLSLYNTTSASCMWKYDAS-PEYLSCIRRNP 189 (1342)
Q Consensus 155 ~s~d~~i~lWd~~tg~~i~~~~~~-~~~v~~v~fsP 189 (1342)
+-.||+|+|-|+.+|..+....+. ...|+++-|+|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 999999999999999887664332 34666666654
No 360
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.40 E-value=16 Score=44.45 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=62.8
Q ss_pred ceEeCCCC-eEEEEcCCeEEE----EeC-----CCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 29 SADLSPSG-LLAFASGSSISI----LDS-----RSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v----~d~-----~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
.+..+|+| +||.|.++.++| |+. ..++......+.-. +.....||++.|-|-..... ..-.
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~------~~~~e~ITsi~clpl~s~~~---s~~~ 76 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLD------DEPGECITSILCLPLSSQKR---STGG 76 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeecc------CCCCCEEEEEEEEEeecccc---cCCC
Confidence 57889998 899987765544 533 12222222222111 00013899999998643321 1224
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEee
Q 000703 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIV 144 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp 144 (1342)
++...+|.|-.+|.|+++.- +|..+..- .-|.. +|..|..-.
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q--~~h~~-pV~~ik~~~ 118 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQ--LLHEE-PVLKIKCRS 118 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHH--hcCcc-ceEEEEecc
Confidence 67789999999999999995 67755432 23555 888877643
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.31 E-value=8 Score=48.62 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=71.9
Q ss_pred CceEeCCCCeEEEEcC-CeEEEEeCCCccee-EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 28 GSADLSPSGLLAFASG-SSISILDSRSLQLI-STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 28 ~a~~~s~~gllA~gs~-~~V~v~d~~s~~~~-~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
.|+|-+ ...||.|++ +.|.+++...++.. +...+-.+ .++....|++ ..++|
T Consensus 39 Tc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-----------~~~~~~vs~~--------------e~lvA 92 (726)
T KOG3621|consen 39 TCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-----------ITCVRSVSSV--------------EYLVA 92 (726)
T ss_pred EEeecC-CceEEEecccceEEEEecCchhhhcccccCccc-----------eEEEEEecch--------------hHhhh
Confidence 455543 348888865 79999997766542 33333222 3444555554 45688
Q ss_pred EEeCCCcEEEEeCCCCeEE--EEe-c-CCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCC
Q 000703 106 AADRHGRVALLDFRLRSVV--LWI-D-PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS 168 (1342)
Q Consensus 106 Sg~~dG~V~vWD~~~g~~~--~~l-~-~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t 168 (1342)
.|+..|.|.|.-+..+... ..+ . ...|.. .|++|+|++++ ..|-+|+..|.|.+=.+++
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~-rVTal~Ws~~~---~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC-RVTALEWSKNG---MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCc-eEEEEEecccc---cEEeecCCCceEEEEEech
Confidence 8999999988877654321 111 1 123445 89999999987 7888888888887766554
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.23 E-value=1.2 Score=43.73 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEe
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1342)
.+-|++||+|..||||+-. .++.++..+ +.|..+.-...++|+-+-.++ ..|.|+...++|-+.+..
T Consensus 15 ~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NG---TVGvY~~~~RlWRiKSK~------- 81 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANG---TVGVYDRSQRLWRIKSKN------- 81 (111)
T ss_pred cceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCC---EEEEEeCcceeeeeccCC-------
Confidence 4678899999999999853 566666543 567777777777765433322 245566667777554322
Q ss_pred ccCCCCCeEEEEE-cCC--C-CEEEEEECCCCEEE
Q 000703 609 QKPERAPIRALRA-SSS--G-RYLLILFRDAPVEV 639 (1342)
Q Consensus 609 ~g~h~~~I~~i~~-Spd--g-~~Las~s~D~tIkv 639 (1342)
.+.++.+ .-+ | .-|++|-.+|.|++
T Consensus 82 ------~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 ------QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2333333 333 3 35778877777653
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.82 E-value=2.4 Score=41.58 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=60.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCCC
Q 000703 766 PHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFP 845 (1342)
Q Consensus 766 ~~LasGs~DgtI~lWDl~tg~~~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~~ 845 (1342)
+-|+.|+.|..||+|+=.. .+..+. -++.|..+.-... ++++-+...|||.|+|-... +.+.- +.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-~~~Ei~-e~~~v~~L~~~~~-------~~F~Y~l~NGTVGvY~~~~R--lWRiK-SK--- 80 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-IVAEIT-ETDKVTSLCSLGG-------GRFAYALANGTVGVYDRSQR--LWRIK-SK--- 80 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-EEEEEe-cccceEEEEEcCC-------CEEEEEecCCEEEEEeCcce--eeeec-cC---
Confidence 4799999999999997532 133333 3567777776655 57888889999999875443 22111 11
Q ss_pred CCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEE
Q 000703 846 GTLVLELDWLPTRTDKNDPLVLCIAGADSSFR 877 (1342)
Q Consensus 846 ~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIr 877 (1342)
..+.++.+.... .+|.+ -|++|=.+|.|-
T Consensus 81 -~~~~~~~~~D~~-gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 81 -NQVTSMAFYDIN-GDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred -CCeEEEEEEcCC-CCCce-EEEEEecCCeEE
Confidence 346777776541 12333 477888888764
No 364
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.65 E-value=1.4 Score=54.04 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=73.1
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-----CCeEEE--EecCCCCCCCCe--eEEEEeecCC
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-----LRSVVL--WIDPDPNPKLGI--QDLCWIVSKP 147 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~-----~g~~~~--~l~~~~h~~~~V--~~l~wsp~~~ 147 (1342)
.|..|.|+|-+. .+...|........|.||-+. +++.+. +-++.. ..|| +++.|.|..
T Consensus 58 hV~GlsW~P~~~----------~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e--~~pvLpQGCVWHPk~- 124 (671)
T PF15390_consen 58 HVHGLSWAPPCT----------ADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE--PFPVLPQGCVWHPKK- 124 (671)
T ss_pred eeeeeeecCccc----------CCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC--CcccCCCcccccCCC-
Confidence 799999999752 233355556778889999974 122221 111111 1133 678899987
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeEEEEEe-CCCCceEEEEecCCCCCEEEEE-eCCCeEEEEE
Q 000703 148 DSFVLAAINGPSVLSLYNTTSASCMWKYD-ASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVR 208 (1342)
Q Consensus 148 ~~~lLas~s~d~~i~lWd~~tg~~i~~~~-~~~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d 208 (1342)
.+|++......-.+.++......-+.+ ...+-|.|.+|.+ ||++|+++ |..=--++||
T Consensus 125 --~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 125 --AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred --ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEec
Confidence 788888776666778877443333333 2267899999999 88888776 3322334554
No 365
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.62 E-value=15 Score=44.45 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=81.1
Q ss_pred CCCcEEEEE--eC----CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeC---------------
Q 000703 99 SSHLLLAAA--DR----HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING--------------- 157 (1342)
Q Consensus 99 p~g~~LASg--~~----dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~--------------- 157 (1342)
|+|..++|+ +. -|-+.+-|-.+.+.+...+.......--+++-|.|-. ++++|...
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~---nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH---NVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT---TEEEE-B---HHHHTT---TTTH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC---CEEEEeccCChhhcccCCChhHh
Confidence 457788876 22 2567788888777776665432211134667777754 56666531
Q ss_pred -----CCeEEEEECCCCeEEEEEeCCCC--ceEEEEec--CCCCCEEEEEeCCCeEEEEEecCCcccceeeee-EEEec-
Q 000703 158 -----PSVLSLYNTTSASCMWKYDASPE--YLSCIRRN--PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKE-LQIQT- 226 (1342)
Q Consensus 158 -----d~~i~lWd~~tg~~i~~~~~~~~--~v~~v~fs--P~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~-~~i~~- 226 (1342)
-++|.+||..+.+.+.+++...+ ....++|- |....-++.+-..++|..|--..+ .....++ ..|..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~--g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD--GEWAAEKVIDIPAK 293 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET--TEEEEEEEEEE--E
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC--CCeeeeEEEECCCc
Confidence 26899999999999998887544 34466774 422333444455566666532111 1111121 11110
Q ss_pred --CcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCC---ceeEEEec
Q 000703 227 --DCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYE---TPLFSAAL 293 (1342)
Q Consensus 227 --~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~---~~l~~~~l 293 (1342)
+.-.+..+.+. ....|.-+..+..|.|.|.|.... ..|+|+-||+... +.++.+.+
T Consensus 294 ~v~~~~lp~ml~~-----------~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 294 KVEGWILPEMLKP-----------FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp E--SS---GGGGG-----------G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred ccCcccccccccc-----------cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence 00001111000 011233467788999999988877 5899999999864 33444443
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.58 E-value=3.7 Score=52.44 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC-----
Q 000703 560 GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD----- 634 (1342)
Q Consensus 560 ~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D----- 634 (1342)
..+.+.+++++|..+.+-..... ....+...|++.+. .|..+++. .+ ...+.-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt--~g---~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVL--EG---HSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeee--cC---CCCCCceECCCCCceEEEecCcceEE
Confidence 46778899999977665542111 11224456777775 34333432 23 136677899999988777533
Q ss_pred -----CCEEEE--eccCCcceeeeccCceEEEEEcCC
Q 000703 635 -----APVEVW--AMTKNPIMLRSLALPFTVLEWTLP 664 (1342)
Q Consensus 635 -----~tIkvW--Dl~kt~~~l~~l~~~vt~l~wsp~ 664 (1342)
+.-++| ++ ..+...+.++..+..+.|||+
T Consensus 423 v~~~~~~gql~~~~v-d~ge~~~~~~g~Issl~wSpD 458 (591)
T PRK13616 423 VIRDPATGQLARTPV-DASAVASRVPGPISELQLSRD 458 (591)
T ss_pred EeccCCCceEEEEec-cCchhhhccCCCcCeEEECCC
Confidence 112333 33 233222233445777888876
No 367
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.40 E-value=12 Score=49.31 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=43.2
Q ss_pred EcCCeEEEEEccCCceeEEEecCCCc--------cceE-EEEEcCCCC---EEEEEeCCCcEEEEEccCCceeeeE
Q 000703 272 TFPRELVVFDLQYETPLFSAALPRGC--------AKFL-DVLADPNND---LLYCAHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 272 ~~d~~I~iwDl~t~~~l~~~~l~~~~--------~~~~-~v~~~pdg~---~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
.+.+.|.-.|++||+....+....+. .+.+ ++ .-.+|+ .|+.+..+|.+.+.|+++|+.+...
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~-~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDL-PDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccceEEEEeCCCCceEEEecccCCccccccccCCceEEee-ecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 35677888999999988766542121 1211 12 122563 8999999999999999999876644
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.36 E-value=20 Score=41.99 Aligned_cols=228 Identities=17% Similarity=0.116 Sum_probs=112.8
Q ss_pred eEeCCCC-eEEEE--cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEE
Q 000703 30 ADLSPSG-LLAFA--SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1342)
Q Consensus 30 ~~~s~~g-llA~g--s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1342)
--|.++. .|.+. -++.|.-||+.+++. .++..+. .++++..-.. +.+|++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~------------~~~~~~~~d~--------------~g~Lv~ 82 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG------------GFSSGALIDA--------------GGRLIA 82 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC------------CcccceeecC--------------CCeEEE
Confidence 3566654 23333 367888888876643 3344443 2333333221 334555
Q ss_pred EeCCCcEEEEeCCCCeEEEEe-cC-CCCCCCCeeEEEEeecCCCCcEEEEEeC---------CCeEEEEECC-CCeEEEE
Q 000703 107 ADRHGRVALLDFRLRSVVLWI-DP-DPNPKLGIQDLCWIVSKPDSFVLAAING---------PSVLSLYNTT-SASCMWK 174 (1342)
Q Consensus 107 g~~dG~V~vWD~~~g~~~~~l-~~-~~h~~~~V~~l~wsp~~~~~~lLas~s~---------d~~i~lWd~~-tg~~i~~ 174 (1342)
+. +| +.++|+.++..+..+ +. .+.....-+++...|++ .+-++... ...-.||-+. .|..+..
T Consensus 83 ~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG---~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 83 CE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG---RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred Ec-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC---CEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 43 33 667787766653322 11 22222245677777765 44443322 1112355444 4444333
Q ss_pred EeCCCCceEEEEecCCCCCEEEEE-eCCCeEEEEEecC-CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcC
Q 000703 175 YDASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLG-QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLF 252 (1342)
Q Consensus 175 ~~~~~~~v~~v~fsP~d~~~la~~-s~dG~v~~~d~~~-~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~ 252 (1342)
...+-..-+.++||| |++.|-.+ +..+.|..+++.. ....... +.+.. .+. .
T Consensus 158 ~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~-------------~~~-----------~ 211 (307)
T COG3386 158 LDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVD-------------FDE-----------E 211 (307)
T ss_pred ecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEE-------------ccC-----------C
Confidence 333223346899999 77666555 5557777776642 1111100 00100 000 0
Q ss_pred ccceEEEEEccCCCceEEEEcCC-eEEEEEccCCceeEEEecCCCccceEEEEE-cCCCCEEEEEeCC
Q 000703 253 PLYMVKFTFSPHWRHIIFVTFPR-ELVVFDLQYETPLFSAALPRGCAKFLDVLA-DPNNDLLYCAHLD 318 (1342)
Q Consensus 253 ~~~v~~~aFSpdg~~ll~~~~d~-~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~~D 318 (1342)
+..--.++.-.+|..-+.+..++ .|.+|+.. |+.+..+.++. .....++| .|+.+.||..+..
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEecC
Confidence 01111223444554333333333 89999999 99998888773 22333444 4677877766554
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.23 E-value=2.5 Score=51.74 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred EEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEE-E
Q 000703 553 ASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLI-L 631 (1342)
Q Consensus 553 ~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las-~ 631 (1342)
+.+.--...+..-+|++++.-+.+..- .......+.++|+.+|+...+....+ .-..-+|||||++||- .
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f-----~~~~~~~i~~~~l~~g~~~~i~~~~g----~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSF-----ELGGCPRIYYLDLNTGKRPVILNFNG----NNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEE-----ecCCCceEEEEeccCCccceeeccCC----ccCCccCCCCCCEEEEEE
Confidence 333333456667789998854333210 01111479999999987444433333 2234589999998864 4
Q ss_pred ECCCCEEEEec
Q 000703 632 FRDAPVEVWAM 642 (1342)
Q Consensus 632 s~D~tIkvWDl 642 (1342)
.+|+...||=+
T Consensus 257 ~rdg~~~iy~~ 267 (425)
T COG0823 257 SRDGSPDIYLM 267 (425)
T ss_pred CCCCCccEEEE
Confidence 57777666643
No 370
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.14 E-value=0.53 Score=50.35 Aligned_cols=86 Identities=29% Similarity=0.333 Sum_probs=55.0
Q ss_pred CCCceEeCCCCeEEEEcCCeEEEEeCCCcc-e-------------------eEeecCCCC----------CCCCCCCCCC
Q 000703 26 NFGSADLSPSGLLAFASGSSISILDSRSLQ-L-------------------ISTIPIPPP----------TSAGSVASLS 75 (1342)
Q Consensus 26 ~~~a~~~s~~gllA~gs~~~V~v~d~~s~~-~-------------------~~~l~~H~~----------~~~~~~~~~~ 75 (1342)
..+|++||.||.||.+.+..|.|.|+.... . +..+..+.. .+........
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 457999999999999999999999544322 0 000000000 0000000112
Q ss_pred CcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC
Q 000703 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR 119 (1342)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~ 119 (1342)
+.|..++|||.|.- .+.+-+||.-..+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~--------~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLG--------PNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCC--------CCCceEEEEEcCCCeEEEEecC
Confidence 37899999998732 1347789999999999999865
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.32 E-value=33 Score=41.83 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=63.4
Q ss_pred CCceEeCCCC-eEEEEc---C---CeEEEEeCCCcceeE-eecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCC
Q 000703 27 FGSADLSPSG-LLAFAS---G---SSISILDSRSLQLIS-TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs---~---~~V~v~d~~s~~~~~-~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1342)
++...+||+| ++||+- | ..++|+|+.+++.+. .+.... -..+.|++++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-------------~~~~~W~~d~~---------- 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-------------FSSVSWSDDGK---------- 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-------------SEEEEECTTSS----------
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-------------cceEEEeCCCC----------
Confidence 3468899999 888862 2 368999999998764 233222 12399998852
Q ss_pred CCCcEEEEE-eC---------CCcEEEEeCCCCeE--EEEecCCCCCCCCeeEEEEeecCCCCcEEE-EEeCC---CeEE
Q 000703 99 SSHLLLAAA-DR---------HGRVALLDFRLRSV--VLWIDPDPNPKLGIQDLCWIVSKPDSFVLA-AINGP---SVLS 162 (1342)
Q Consensus 99 p~g~~LASg-~~---------dG~V~vWD~~~g~~--~~~l~~~~h~~~~V~~l~wsp~~~~~~lLa-s~s~d---~~i~ 162 (1342)
.++.+. +. ..+|.+|++.++.. ...|+-....- ....+..++++ ++|. ..... +.+.
T Consensus 183 ---~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~-~~~~~~~s~d~---~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 183 ---GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF-WFVSVSRSKDG---RYLFISSSSGTSESEVY 255 (414)
T ss_dssp ---EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT-SEEEEEE-TTS---SEEEEEEESSSSEEEEE
T ss_pred ---EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc-EEEEEEecCcc---cEEEEEEEccccCCeEE
Confidence 223333 22 33488999877642 23332222111 15667777766 4443 33332 3456
Q ss_pred EEECCCC
Q 000703 163 LYNTTSA 169 (1342)
Q Consensus 163 lWd~~tg 169 (1342)
+-|+..+
T Consensus 256 ~~d~~~~ 262 (414)
T PF02897_consen 256 LLDLDDG 262 (414)
T ss_dssp EEECCCT
T ss_pred EEecccc
Confidence 6677654
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.99 E-value=10 Score=46.37 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=96.1
Q ss_pred cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCC----CCceE-EEE
Q 000703 112 RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS----PEYLS-CIR 186 (1342)
Q Consensus 112 ~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~----~~~v~-~v~ 186 (1342)
.|.|++. .|+.+..+.... + .|-++.|+.+ ..|+....||+++++|.. |+. .+... ...|. +..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~-~iv~~~wt~~----e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--G-RIVGMGWTDD----EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--C-CEEEEEECCC----CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccc
Confidence 4889995 577777765543 5 8999999875 345567789999999985 655 33221 11221 211
Q ss_pred ec-CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000703 187 RN-PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1342)
Q Consensus 187 fs-P~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg 265 (1342)
|. .|-..-+++...++.++... .... ....+. +..+...+.. ....+....-..++.+.
T Consensus 131 ~~~~~~~~GivvLt~~~~~~~v~--n~~~-~~~~~~---------~~~~p~~~~~--------~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 131 FAIWFYKNGIVVLTGNNRFYVVN--NIDE-PVKLRR---------LPEIPGLWTK--------FHWWPSWTVIPLLSSDR 190 (410)
T ss_pred cccccCCCCEEEECCCCeEEEEe--Cccc-cchhhc---------cccCCCcccc--------cccccccccceEeecCc
Confidence 11 22223344444445554431 1000 000000 0001111110 00001000013466666
Q ss_pred CceEEEEcCCeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000703 266 RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1342)
Q Consensus 266 ~~ll~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1342)
...+....++.+.+.|-...+. +. ..+++..++.+|+|+.|+....+|.+.+....
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~-----i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ-----ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc-----cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 6666666677777555432211 11 23578999999999999999999998887654
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.75 E-value=21 Score=42.07 Aligned_cols=178 Identities=15% Similarity=0.218 Sum_probs=98.9
Q ss_pred CcEEEEeCCCCcEEEEeeecC-CCeEE---EEEcCC----CcEEEEecCCcccccCccc-CEEEEEEcCCC-----ceee
Q 000703 539 GAVDVVDVSANAVTASFSVHN-GTVRG---LRWLGN----SRLVSFSYSQVNEKSGGYI-NRLVVTCLRSG-----INRA 604 (1342)
Q Consensus 539 GtI~lWDl~tg~~~~~l~gH~-~~V~~---l~fs~d----~~llS~s~d~~~~~sg~~~-~~i~lwD~~tG-----~~~~ 604 (1342)
+.|+|.|..+...+.++.-.. ..|.+ +.|..+ ..++..+...........+ +.|.++++... +.+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999988888776665433 33444 444443 3555555432110001122 78999999874 3222
Q ss_pred eEEeccCCCCCeEEEEEcCCCCEEEEEECCCCEEEEeccCCcc-eeeecc--Cc--eEEEEEcCCCCCCCCCCCCCCccc
Q 000703 605 FRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI-MLRSLA--LP--FTVLEWTLPTVPWPSQTGPSRQSS 679 (1342)
Q Consensus 605 l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~tIkvWDl~kt~~-~l~~l~--~~--vt~l~wsp~~~~~~~~~~~~k~~~ 679 (1342)
+.. ....++|++|.-- .| +|+++ .++.|.+|++ .... +.+.-. .+ ++++.
T Consensus 82 i~~--~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l-~~~~~l~~~~~~~~~~~i~sl~------------------- 136 (321)
T PF03178_consen 82 IHS--TEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDL-DNSKTLLKKAFYDSPFYITSLS------------------- 136 (321)
T ss_dssp EEE--EEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEE-ETTSSEEEEEEE-BSSSEEEEE-------------------
T ss_pred EEE--EeecCcceEhhhh-CC-EEEEe-ecCEEEEEEc-cCcccchhhheecceEEEEEEe-------------------
Confidence 222 1245789988866 34 45544 3588999999 4554 332110 11 11111
Q ss_pred cccCCCCCccCCCcccccccCCCCCcCCCCCCcCCCCCCeEEEEecCCCEEEEEe--cCCeeeccCCCCCCCccccccce
Q 000703 680 LSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPSSSFISSDGL 757 (1342)
Q Consensus 680 ~~~~~~~~i~~~g~~~~~~~~~~~~~~~~s~~s~~~~~e~la~~~~DgtI~lwdv--~g~~v~d~~~~~~~~~~~~~~~~ 757 (1342)
..++.++++..-..+.++.. +++++..+... ....+
T Consensus 137 -----------------------------------~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-------~~~~~ 174 (321)
T PF03178_consen 137 -----------------------------------VFKNYILVGDAMKSVSLLRYDEENNKLILVARD-------YQPRW 174 (321)
T ss_dssp -----------------------------------EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-------SS-BE
T ss_pred -----------------------------------ccccEEEEEEcccCEEEEEEEccCCEEEEEEec-------CCCcc
Confidence 11357788888888888755 34433211000 01235
Q ss_pred EEEEee--cCCEEEEEeCCCcEEEEECC
Q 000703 758 ITAMAY--RLPHVVMGDRSGNIRWWDVT 783 (1342)
Q Consensus 758 V~~va~--dg~~LasGs~DgtI~lWDl~ 783 (1342)
++++.+ |++.++.++.+|+|.++...
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 777777 77899999999999998875
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=0.66 Score=60.10 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=76.9
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCce--eeeccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000703 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHS--SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1342)
Q Consensus 758 V~~va~dg~~LasGs~DgtI~lWDl~tg~~--~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l 835 (1342)
+.+.+..+-.+|.|++.|.|-..|++.... +.=..-+++|++++|+-+ | .+++.|..+|-|.+||...++.+
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d--g----~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD--G----SLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC--C----ceeccccCCCcEEEEEccCCcce
Confidence 455666677899999999999888866321 221234689999999988 5 66778889999999999998754
Q ss_pred cccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccCCc
Q 000703 836 ANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTSE 885 (1342)
Q Consensus 836 ~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~~~ 885 (1342)
. .+.....++..|.-+.|... +. .+.++..-|+ +|......
T Consensus 166 ~-~i~e~~ap~t~vi~v~~t~~----nS--~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 166 K-VITEHGAPVTGVIFVGRTSQ----NS--KLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred e-eeeecCCccceEEEEEEeCC----Cc--EEEEccCCCc--eEEEEech
Confidence 2 23222222456777777764 33 3567666665 78765443
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.47 E-value=49 Score=41.96 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC-CCeeEEEEeecCC--CCcEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK-LGIQDLCWIVSKP--DSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~-~~V~~l~wsp~~~--~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
+.+|..++.+|.|.-.|..+|+.+-.+....... .++....+...+. ....+..++.|+.|.-.|..||+.+|++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 3466677778889888999998776654321110 0110100000000 013455567789999999999999998754
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.23 E-value=16 Score=41.78 Aligned_cols=180 Identities=15% Similarity=0.127 Sum_probs=104.1
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1342)
.|.++.|+|+. +.|.+-.....-.||=..+|+.+.++++.+-+. -..+.|..++ .+.++--
T Consensus 87 nvS~LTynp~~--------------rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--pE~Ieyig~n---~fvi~dE 147 (316)
T COG3204 87 NVSSLTYNPDT--------------RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--PETIEYIGGN---QFVIVDE 147 (316)
T ss_pred cccceeeCCCc--------------ceEEEecCCCceEEEEecCCceEEEecccccCC--hhHeEEecCC---EEEEEeh
Confidence 79999999874 567777777778899888999999998877554 3556777655 6776666
Q ss_pred CCCeEEEEECCCCeEEE-----EEeC----C-CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEec
Q 000703 157 GPSVLSLYNTTSASCMW-----KYDA----S-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQT 226 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~-----~~~~----~-~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~ 226 (1342)
.++.+.+..+..++.+. +++. + .-.+-.++++| ...+|.++-...-+.++.+.. .++.... .+..
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~-~~~~l~~---~~~~ 222 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQ-SPSSLSV---HASL 222 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEec-CCccccc---cccc
Confidence 67888877665443211 1111 1 22456899999 555555554444444433321 1100000 0000
Q ss_pred CcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEecCCCcc
Q 000703 227 DCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCA 298 (1342)
Q Consensus 227 ~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~ 298 (1342)
+.... + .-+-..+-.+.|.+...+++..+ .++.+.-.|+. |..+..+.+.++..
T Consensus 223 ~~~~~----~-------------~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~ 277 (316)
T COG3204 223 DPTAD----R-------------DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNH 277 (316)
T ss_pred Ccccc----c-------------ceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCC
Confidence 00000 0 00112344568887766666666 56778778876 55566666655443
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=0.73 Score=59.73 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1342)
+..+|.|+..|.|-.-|.... +.++.-..+..++|.+++|+.++ .+|+.|.++|.|.+||+.++..+..++.+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg---~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDG---SLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCC---ceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 456899999999999887542 22221133444499999999987 8999999999999999999988887776554
Q ss_pred ceEEEEecCC--CCCEEEEEeCCCe
Q 000703 181 YLSCIRRNPF--DARHFCVLGLKGL 203 (1342)
Q Consensus 181 ~v~~v~fsP~--d~~~la~~s~dG~ 203 (1342)
+.+.+-+.-. +...+.++...|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 4443332211 3344555555554
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.09 E-value=16 Score=46.80 Aligned_cols=154 Identities=11% Similarity=0.107 Sum_probs=75.5
Q ss_pred CeeEEEEeecCCCCcEEEEEeCC-CeEEEE-----------ECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCe
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGP-SVLSLY-----------NTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGL 203 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d-~~i~lW-----------d~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~ 203 (1342)
....-.|+|++ ..|++.... ..+++. +++.|+... .. ...|..++|+| |+.++++.. +|.
T Consensus 398 ~~t~PsWspDG---~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~-~g~Issl~wSp-DG~RiA~i~-~g~ 469 (591)
T PRK13616 398 SLTRPSWSLDA---DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV-PGPISELQLSR-DGVRAAMII-GGK 469 (591)
T ss_pred CCCCceECCCC---CceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc-CCCcCeEEECC-CCCEEEEEE-CCE
Confidence 35566899986 445554322 222222 443333211 11 34699999999 999999876 477
Q ss_pred EEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcc
Q 000703 204 LLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ 283 (1342)
Q Consensus 204 v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~ 283 (1342)
|++--+..... +. ..+. ...++. + .......++.|.+++. |+.+..+....+|-++
T Consensus 470 v~Va~Vvr~~~----G~-~~l~----~~~~l~-----------~---~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 470 VYLAVVEQTED----GQ-YALT----NPREVG-----------P---GLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEEeCCC----Cc-eeec----ccEEee-----------c---ccCCccccceEecCCE-EEEEecCCCCceEEEe
Confidence 76621111000 00 1000 000010 0 0011135678999987 5555544444445443
Q ss_pred C-CceeEEEecCCCccceEEEEEcCCCCEEEEEeCCCcEEE
Q 000703 284 Y-ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSI 323 (1342)
Q Consensus 284 t-~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~l 323 (1342)
. |.....++..+-..++..++..+ ..||....+|.+.+
T Consensus 526 vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 526 LDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred cCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 2 32211112111246677777775 35776777775543
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.05 E-value=5 Score=48.99 Aligned_cols=105 Identities=15% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCCEEEEE-eCCC----cEEEEeCCCCcEEEE-eeecCCCeEEEEEcCCCc-EEEEecCCcccc-cCcccCEEEEEEcCC
Q 000703 528 AVPLVALG-TQSG----AVDVVDVSANAVTAS-FSVHNGTVRGLRWLGNSR-LVSFSYSQVNEK-SGGYINRLVVTCLRS 599 (1342)
Q Consensus 528 ~~~llAsG-s~DG----tI~lWDl~tg~~~~~-l~gH~~~V~~l~fs~d~~-llS~s~d~~~~~-sg~~~~~i~lwD~~t 599 (1342)
++++||.+ +..| +|++.|+.+|+.+.. +.. ..-..+.|.+++. ++-...+..... ..++...|..|.+.+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 67888765 3444 599999999976543 222 1223499999975 444444432100 123456899999987
Q ss_pred CceeeeEEeccCCCCC-eEEEEEcCCCCEEEEEECC
Q 000703 600 GINRAFRVLQKPERAP-IRALRASSSGRYLLILFRD 634 (1342)
Q Consensus 600 G~~~~l~~l~g~h~~~-I~~i~~Spdg~~Las~s~D 634 (1342)
+.......+.+....- ...+..++||++|++.+..
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 7543223334433333 6789999999998876443
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.52 E-value=0.6 Score=38.55 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc
Q 000703 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA 550 (1342)
Q Consensus 501 ~~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~ 550 (1342)
+..|.++++|| ...+||.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P----------------~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP----------------TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC----------------CCCEEEEEECCCeEEEEEC-CCc
Confidence 56799999999 4789999999999999998 444
No 381
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=90.49 E-value=0.7 Score=53.56 Aligned_cols=77 Identities=25% Similarity=0.292 Sum_probs=47.4
Q ss_pred hHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhccccc---H--HHHHHHHHHhCCHHHHHH
Q 000703 1185 THLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHN---I--WRALILYVAAGGLQEALA 1259 (1342)
Q Consensus 1185 v~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~---~--~~a~~~~~~~g~~~~~~~ 1259 (1342)
|+.+.+.|+.++|+.++.+.++|.+|+.+|... .++-+.+|..++..+-.....+ . .-.++.-+-.|+..++++
T Consensus 2 I~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~-g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~ 80 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALDNGLWAHALLLASSL-GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVD 80 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHH
Confidence 567889999999999999999999999999655 4455788999999998644332 0 112222333566665555
Q ss_pred HHH
Q 000703 1260 ALR 1262 (1342)
Q Consensus 1260 ~l~ 1262 (1342)
-|.
T Consensus 81 ~l~ 83 (284)
T PF12931_consen 81 ELV 83 (284)
T ss_dssp HHH
T ss_pred Hhc
Confidence 444
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.45 E-value=40 Score=39.59 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEE-EcCCCcEEEEecCCcccccCcccCEEEEEEcCCCce-eee
Q 000703 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLR-WLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-RAF 605 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~-fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-~~l 605 (1342)
.+.++.+.-..+.|.-||..+|+.. .+. +.+.+.++. ...+++++++.. .+.++++.+|.. +.+
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~------------g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH------------GVRLLDPDTGGKITLL 101 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc------------ccEEEeccCCceeEEe
Confidence 3457778888899999999877542 232 233344444 345566665432 356677666653 222
Q ss_pred EEec-cCCCCCeEEEEEcCCCCEEEEEEC
Q 000703 606 RVLQ-KPERAPIRALRASSSGRYLLILFR 633 (1342)
Q Consensus 606 ~~l~-g~h~~~I~~i~~Spdg~~Las~s~ 633 (1342)
.... +......+.+.+.|+|++-+....
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~ 130 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMG 130 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCC
Confidence 2111 112245568899999998876544
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.42 E-value=4.2 Score=53.07 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=90.4
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC-
Q 000703 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR- 121 (1342)
Q Consensus 43 ~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g- 121 (1342)
.+.|.-.|..+|+++....-|.. +..+.+.|+.+...+ ++.. -..|=.+..+..||.+-.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~------------~~v~~~~p~~K~aql-----t~e~--tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDD------------IPVVDIAPDSKFAQL-----TNEQ--TFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCC------------cceeEeccccccccc-----CCCc--eEEEECCCceEEeccCCCC
Confidence 36777888889999999988875 446677787543211 2333 345556778999998753
Q ss_pred eEEEEecC-CCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE-EeCCCCceEEEEecCCCCCEEEEEe
Q 000703 122 SVVLWIDP-DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK-YDASPEYLSCIRRNPFDARHFCVLG 199 (1342)
Q Consensus 122 ~~~~~l~~-~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~-~~~~~~~v~~v~fsP~d~~~la~~s 199 (1342)
..+..-.. +-.++..-++++=+.+ -.||+|+.+|-|||+|- .|..-.+ +.+-.++|..+..+. ||+.+++.+
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~----G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc 637 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTED----GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATC 637 (794)
T ss_pred CceeeccccccccCCCceEEEecCC----ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEee
Confidence 22222111 1122324455544443 37899999999999995 4543222 333368999999998 999998877
Q ss_pred CCCeEEEEEe
Q 000703 200 LKGLLLSVRV 209 (1342)
Q Consensus 200 ~dG~v~~~d~ 209 (1342)
. ..+++++.
T Consensus 638 ~-tyLlLi~t 646 (794)
T PF08553_consen 638 K-TYLLLIDT 646 (794)
T ss_pred c-ceEEEEEE
Confidence 5 45555554
No 384
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.03 E-value=1.9 Score=56.02 Aligned_cols=101 Identities=17% Similarity=0.067 Sum_probs=65.0
Q ss_pred eEEEEcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEE
Q 000703 37 LLAFASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVA 114 (1342)
Q Consensus 37 llA~gs~~~V~v~d~~s~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~ 114 (1342)
.+..-+++.+..||||-.. ++.. ..|.- +....-+|++=+.+| .||.|+.+|.||
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~-~~k~Y-------~~~~~Fs~~aTt~~G---------------~iavgs~~G~IR 601 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDS-QSKQY-------SSKNNFSCFATTEDG---------------YIAVGSNKGDIR 601 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeec-ccccc-------ccCCCceEEEecCCc---------------eEEEEeCCCcEE
Confidence 3444478899999998432 2221 12221 112255666655443 799999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC
Q 000703 115 LLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1342)
Q Consensus 115 vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1342)
++|- .|..-.+. +++-.. ||.+|+-+.||. ++|||| +..|.|.++.
T Consensus 602 Lyd~-~g~~AKT~-lp~lG~-pI~~iDvt~DGk--wilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 602 LYDR-LGKRAKTA-LPGLGD-PIIGIDVTADGK--WILATC--KTYLLLIDTL 647 (794)
T ss_pred eecc-cchhhhhc-CCCCCC-CeeEEEecCCCc--EEEEee--cceEEEEEEe
Confidence 9994 44322222 455445 999999999883 677766 5788898873
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.50 E-value=43 Score=38.13 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=55.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-cEEEEeeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCEEEEEEcCCCceeee
Q 000703 528 AVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1342)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg-~~~~~l~gH~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1342)
+++.|+.|+++| |.++++... ...+.. +...|..+...++- .++..+ ++.+.++++.+-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-----------d~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-----------DGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-----------CCccEEEEchhhccccc
Confidence 578999999999 899998332 222222 23348888887754 444432 24788888754221110
Q ss_pred E-----------EeccCCCCCeEEEE--EcCCCCEEEEEECCCCEEEEec
Q 000703 606 R-----------VLQKPERAPIRALR--ASSSGRYLLILFRDAPVEVWAM 642 (1342)
Q Consensus 606 ~-----------~l~g~h~~~I~~i~--~Spdg~~Las~s~D~tIkvWDl 642 (1342)
. ...-+....+...+ -...+...+.....+.|.||..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~ 121 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEW 121 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEE
Confidence 0 00001222333333 2233444444555668999987
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.00 E-value=0.65 Score=38.35 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=31.2
Q ss_pred CeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 000703 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1342)
+|..++|+|.. ++||.++.+|.|.++.+ +++++|
T Consensus 13 ~v~~~~w~P~m---dLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 13 RVSCMSWCPTM---DLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred cEEEEEECCCC---CEEEEEECCCeEEEEEC-CCcCcc
Confidence 79999999987 89999999999999999 787776
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.94 E-value=21 Score=45.69 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=59.6
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCcEEE--EeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCC
Q 000703 528 AVPLVALGTQSG------AVDVVDVSANAVTA--SFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRS 599 (1342)
Q Consensus 528 ~~~llAsGs~DG------tI~lWDl~tg~~~~--~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~t 599 (1342)
.+.++++|+.++ +|+.+|..++.-.. .+. +.-...+++...+--+++++++. ....-+++..+|..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~----~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDS----GSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccC----CCcccceEEEecCCC
Confidence 367888888774 78899988774322 222 11223345555554555555541 011235788999988
Q ss_pred CceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCC-----CEEEEec
Q 000703 600 GINRAFRVLQKPERAPIRALRASSSGRYLLILFRDA-----PVEVWAM 642 (1342)
Q Consensus 600 G~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~-----tIkvWDl 642 (1342)
++...+..+.. .....-...-+|..-|+|+.|+ +++.||.
T Consensus 359 ~~W~~~a~M~~---~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 359 NQWTPVAPMNT---KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred CceeccCCccC---ccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 77443322211 1111112233688889998886 4677776
No 388
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.57 E-value=2 Score=53.63 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=81.1
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCceee--eccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000703 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQ--FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1342)
Q Consensus 758 V~~va~dg~~LasGs~DgtI~lWDl~tg~~~~--l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l 835 (1342)
.+|++-.+++|+.|++-|.+++++-.+|+.+. ..+-.+.+..+..|++ . .++|.++..|.|.|+-+..+.+-
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e----~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--E----YLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--h----HhhhhhcCCceEEeehhhccCCC
Confidence 46677788999999999999999998887544 3445566666677887 1 34666778888999987764321
Q ss_pred ccc-ccCCCC-CCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 836 ANS-LLQPQF-PGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 836 ~~~-l~~gh~-~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
-.. ....|. +...|+++.|+++ +. .+.+|..-|+|-+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~----~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKN----GM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccc----cc--EEeecCCCceEEEEEech
Confidence 111 112222 3478999999997 45 467999999998887775
No 389
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.94 E-value=2.7 Score=54.14 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=76.4
Q ss_pred HHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHh-hhhcc--------cchHHH---------HHHHHHHHHHHHH--h
Q 000703 1119 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAV-ALSSA--------VSRSLL---------ELAVKVVAANMVR--N 1178 (1342)
Q Consensus 1119 ~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~-~~a~~--------~s~~~~---------~~~~k~~a~~l~~--~ 1178 (1342)
..-+++-||+++||++|-+. +.++.+|..-. +++-. .+.+++ =+.++++...-.. .
T Consensus 265 f~~LlLtgqFE~AI~~L~~~----~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN----EFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh----ccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 47789999999999999983 34777776532 22211 111111 0122333332111 3
Q ss_pred cCChhhhHHHHhcCchHH-----HHH-----HhhccCcHHHHH------------------HHHHhhcCCccHHHHHHHH
Q 000703 1179 DRSLSGTHLLCAVGRYQE-----ACS-----QLQDAGCWTDAA------------------TLAATHLKGSDYARVLQRW 1230 (1342)
Q Consensus 1179 ~~~~~gv~~~~~~g~~~~-----a~~-----~l~~~~~W~~a~------------------~la~~~l~~~~~~~~~~~~ 1230 (1342)
.+-.+++++|+++...++ .|. .+...++|..=+ .|.+.....++...++++=
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 334788999988887654 222 111222222111 1111223456677888888
Q ss_pred HHhhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000703 1231 ADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1231 ~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
|....+.+ +...||+||--+|++.+|+++|-+
T Consensus 421 A~~~e~~g-~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 421 AREAEERG-RFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHHHHCT--HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88865544 478999999999999999999865
No 390
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=9 Score=48.60 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHH---------HHHHHHHhcCChhhhH
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKV---------VAANMVRNDRSLSGTH 1186 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~---------~a~~l~~~~~~~~gv~ 1186 (1342)
..-+.+++..||..+|-++==+--=-+.+|| +||.-+||..---+-++..+|. --+-.+..|+..|+-.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~--wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLW--WLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhH--HHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhh
Confidence 3446788999999999986544443334555 6766666665432222111111 1123455666677777
Q ss_pred HHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHH
Q 000703 1187 LLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQR 1229 (1342)
Q Consensus 1187 ~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~ 1229 (1342)
+.-.++.+.|-++....-|.-++|+.+|..+=++.+..+++.+
T Consensus 766 Yiprv~~l~ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 766 YIPRVGGLQEKVKAYLRVGDVKEAADLAAEHRDGAELSEVLSK 808 (829)
T ss_pred hhhccCChHHHHHHHHHhccHHHHHHHHHHhcChHHHHHHHHh
Confidence 7777777777777777777778888888777666666666654
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=85.87 E-value=1.9 Score=47.26 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCeEEEEecCCCEEEEEec--CCeeeccCCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCceeee-
Q 000703 717 SESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGHSSQF- 790 (1342)
Q Consensus 717 ~e~la~~~~DgtI~lwdv~--g~~v~d~~~~~~~~~~~~~~~~V~~va~---dg~~LasGs~DgtI~lWDl~tg~~~~l- 790 (1342)
...++.+..+|.|++|..+ |....-+ + .....|.++-. ++.+..+|..||+||.|+++-++...+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~-----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----C-----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh----h-----cccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 4567899999999998874 3322110 0 11123444444 556888999999999999987763333
Q ss_pred cccc-ccEEEEEEecCCCCCCCCCEEEEE--ECCCeEEEEECCC
Q 000703 791 STHR-EGIRRIKFSPVVPGDRSRGRIAVL--FHDNTFSVFDLDS 831 (1342)
Q Consensus 791 ~~H~-~~V~~v~fSPd~~g~~~~~~Las~--s~DgtI~IWDl~t 831 (1342)
..|. ..+.....+.. + +.|+.+ |.|.+++.|++..
T Consensus 141 g~h~~~~~e~~ivv~s--d----~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGS--D----EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecC--C----ceEEeeccccchhhhhcchhh
Confidence 3344 22222222211 1 344444 5566666666544
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.53 E-value=7.8 Score=49.38 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=78.5
Q ss_pred cccccccCCCCCCCCCCceEeCCCCeEEE--EcCCeEEEEeCCCccee--EeecCCCCCCCCCCCCCCCcEEEEEEecCC
Q 000703 12 WDCNFMLPGPPSRNNFGSADLSPSGLLAF--ASGSSISILDSRSLQLI--STIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1342)
Q Consensus 12 ~~~~~~lpg~~~~~~~~a~~~s~~gllA~--gs~~~V~v~d~~s~~~~--~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1342)
|-+-.++-= ...+..-+.-|.-+.+|. .++..+.|||.+.+++- .+++.+. .|..+.|...
T Consensus 19 w~~t~~~~T--~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~------------~I~dLDWtst- 83 (631)
T PF12234_consen 19 WLLTSTFET--GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDD------------PIRDLDWTST- 83 (631)
T ss_pred EEEEEEEec--CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCC------------ceeeceeeec-
Confidence 666423222 223455566666664443 34578999999988753 3343333 7999999864
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeC-----C----CCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCC
Q 000703 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDF-----R----LRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP 158 (1342)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~-----~----~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d 158 (1342)
|+|+.+.+.|-.+.|.|+-- . +-..+..+.+.+++..+|.+.+|.++| .+++ ++ .
T Consensus 84 -----------~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV-~s-G 147 (631)
T PF12234_consen 84 -----------PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVV-GS-G 147 (631)
T ss_pred -----------CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC---eEEE-Ee-C
Confidence 67888888888999998742 1 123556666667774599999999987 4443 43 2
Q ss_pred CeEEEEE
Q 000703 159 SVLSLYN 165 (1342)
Q Consensus 159 ~~i~lWd 165 (1342)
+.+.|+|
T Consensus 148 Nqlfv~d 154 (631)
T PF12234_consen 148 NQLFVFD 154 (631)
T ss_pred CEEEEEC
Confidence 4555554
No 393
>PHA02713 hypothetical protein; Provisional
Probab=84.60 E-value=59 Score=41.60 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=41.3
Q ss_pred EEeecCCEEEEEeCCC------cEEEEECCC-Cce---eeeccccccEEEEEEecCCCCCCCCCEEEEEECCC--eEEEE
Q 000703 760 AMAYRLPHVVMGDRSG------NIRWWDVTT-GHS---SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN--TFSVF 827 (1342)
Q Consensus 760 ~va~dg~~LasGs~Dg------tI~lWDl~t-g~~---~~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dg--tI~IW 827 (1342)
.++.+|++-+.|+.++ .+..+|..+ .+- ..++........+.+ + | ...++|+.|+ ++..+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~--~----~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D--N----TIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C--C----EEEEEeeecceeehhhc
Confidence 3445888888887652 467899988 552 234433333333333 2 2 4567788888 78888
Q ss_pred ECCCCC
Q 000703 828 DLDSQD 833 (1342)
Q Consensus 828 Dl~t~~ 833 (1342)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 888765
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.17 E-value=26 Score=40.95 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=78.8
Q ss_pred ccccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeE-EEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCC
Q 000703 11 SWDCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSI-SILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITL 88 (1342)
Q Consensus 11 ~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V-~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~ 88 (1342)
+|.. ...+.. ..+..+.-+++| ++|.++.+.+ +-||+-...- +....... -+|..+.|+|++
T Consensus 135 tW~~--~~~~~~--gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~----------~riq~~gf~~~~- 198 (302)
T PF14870_consen 135 TWQA--VVSETS--GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSS----------RRIQSMGFSPDG- 198 (302)
T ss_dssp SEEE--EE-S------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SS----------S-EEEEEE-TTS-
T ss_pred CeeE--cccCCc--ceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCcc----------ceehhceecCCC-
Confidence 4766 444432 346677788999 7888876655 5688643211 11111111 289999999874
Q ss_pred ccccCCCCCCCCCcEEEEEeCCCcEEEEe-CCCCeEEEEecCCC-CCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEEC
Q 000703 89 RCDLLSTEPGSSHLLLAAADRHGRVALLD-FRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT 166 (1342)
Q Consensus 89 ~~~~~s~~~~p~g~~LASg~~dG~V~vWD-~~~g~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~ 166 (1342)
.+.. ..+.|.|+.=| ...++....-..+. ..+..|.+++|.+++ .+.|+++ .++| +...
T Consensus 199 -------------~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~---~~wa~gg-~G~l-~~S~ 259 (302)
T PF14870_consen 199 -------------NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN---EIWAVGG-SGTL-LVST 259 (302)
T ss_dssp --------------EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS----EEEEES-TT-E-EEES
T ss_pred -------------CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC---CEEEEeC-CccE-EEeC
Confidence 3333 33889998888 33333322200111 223368999999865 6666665 4433 3344
Q ss_pred CCCeEEEEEeCC----CCceEEEEecCCCCCEEEEEeCCCeEEEE
Q 000703 167 TSASCMWKYDAS----PEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1342)
Q Consensus 167 ~tg~~i~~~~~~----~~~v~~v~fsP~d~~~la~~s~dG~v~~~ 207 (1342)
+.| .-|+.+.. +..+..+.|.+ +.+-.+.+.+|.++-|
T Consensus 260 DgG-ktW~~~~~~~~~~~n~~~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 260 DGG-KTWQKDRVGENVPSNLYRIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp STT-SS-EE-GGGTTSSS---EEEEEE--TTEEEEE-STTEEEEE
T ss_pred CCC-ccceECccccCCCCceEEEEEcC--CCceEEECCCcEEEEe
Confidence 444 45665532 34677888864 3566667788887654
No 395
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=84.01 E-value=13 Score=45.20 Aligned_cols=83 Identities=13% Similarity=0.242 Sum_probs=54.2
Q ss_pred cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCC----CCCCCcEEEEEEeCCCCCCCCC---
Q 000703 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQP----QFPGTLVLELDWLPTRTDKNDP--- 864 (1342)
Q Consensus 792 ~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~g----h~~~~~V~~l~ws~d~~~~g~~--- 864 (1342)
..+++|++++.|-- +++|+++.||++.|-|++.+.-+.+.-... +.....|..+.|.--.- +++.
T Consensus 84 ~~~g~vtal~~S~i-------GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~-~~D~ySS 155 (395)
T PF08596_consen 84 AKQGPVTALKNSDI-------GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL-GGDGYSS 155 (395)
T ss_dssp --S-SEEEEEE-BT-------SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE--TTSSSEE
T ss_pred ccCCcEeEEecCCC-------cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec-CCCcccc
Confidence 34789999999865 799999999999999998876433211111 12235688888883211 1232
Q ss_pred eEEEEEeCCCcEEEEEcc
Q 000703 865 LVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 865 ~~L~s~s~DgtIrvWdi~ 882 (1342)
+.|+.|...|.+.+|.+.
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 567889999999999985
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.79 E-value=44 Score=38.03 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=82.0
Q ss_pred ccCCCCCCC--CCCceEeCCCC-eEEEEc--C--CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCc
Q 000703 17 MLPGPPSRN--NFGSADLSPSG-LLAFAS--G--SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1342)
Q Consensus 17 ~lpg~~~~~--~~~a~~~s~~g-llA~gs--~--~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1342)
.+||+.... +..++++|++| .+|+-. + ..+.++... +.....+.+. .++.-.|+++
T Consensus 14 pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~-------------~l~~PS~d~~--- 76 (253)
T PF10647_consen 14 PVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGG-------------SLTRPSWDPD--- 76 (253)
T ss_pred ECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCC-------------ccccccccCC---
Confidence 567766543 57899999999 677644 3 455666543 2222223322 4566677765
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEe-CCCCeE-EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe--CCCeEEEEE
Q 000703 90 CDLLSTEPGSSHLLLAAADRHGRVALLD-FRLRSV-VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN--GPSVLSLYN 165 (1342)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~V~vWD-~~~g~~-~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s--~d~~i~lWd 165 (1342)
|...+....++..+++. ..+|.. ...+...+-.. .|..+.+|||+. ++.+... .++.|.+=-
T Consensus 77 -----------g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~-~I~~l~vSpDG~--RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 77 -----------GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG-RITALRVSPDGT--RVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred -----------CCEEEEEcCCCceEEEEecCCCcceeEEecccccCC-ceEEEEECCCCc--EEEEEEecCCCCeEEEEE
Confidence 45666666677777773 344432 22322333333 799999999982 4444332 345565543
Q ss_pred CC---CCe--E----EEEEeCCCCceEEEEecCCCCCEEEEE
Q 000703 166 TT---SAS--C----MWKYDASPEYLSCIRRNPFDARHFCVL 198 (1342)
Q Consensus 166 ~~---tg~--~----i~~~~~~~~~v~~v~fsP~d~~~la~~ 198 (1342)
+. .|. . +.........+..++|.+ +.+.++..
T Consensus 143 V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~ 183 (253)
T PF10647_consen 143 VVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVLG 183 (253)
T ss_pred EEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEEe
Confidence 32 331 1 111111235677888887 55444444
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.51 E-value=31 Score=44.66 Aligned_cols=176 Identities=12% Similarity=0.066 Sum_probs=97.3
Q ss_pred ccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeE----eecCCCCC-------CCCCCCCCCCcEEEEEEec
Q 000703 17 MLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLIS----TIPIPPPT-------SAGSVASLSPFVTAVKWIP 85 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~s~~~~~----~l~~H~~~-------~~~~~~~~~~~Vt~v~~sp 85 (1342)
.+++..=++|..|+.= ..++..+.++.|.||++......- .+.....+ ..+......+.|+.+...-
T Consensus 33 ~l~~~gfKNNLtalsq--~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~ 110 (717)
T PF08728_consen 33 QLQGLGFKNNLTALSQ--RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD 110 (717)
T ss_pred ceeccccccceeEEec--CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc
Confidence 3433333455444432 347777889999999986532211 01111100 0111122345566665543
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-------C----eE-E-E-----EecCCCCCCCCeeEEEEeecCC
Q 000703 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-------R----SV-V-L-----WIDPDPNPKLGIQDLCWIVSKP 147 (1342)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~-------g----~~-~-~-----~l~~~~h~~~~V~~l~wsp~~~ 147 (1342)
-| +...|+.|.+||.|.+|.+.+ . .. . + -|.+. -.. +..+|++.-. +
T Consensus 111 lg------------~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~-SaWGLdIh~~-~ 175 (717)
T PF08728_consen 111 LG------------GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGA-SAWGLDIHDY-K 175 (717)
T ss_pred cC------------CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCC-ceeEEEEEec-C
Confidence 32 357899999999999997621 0 00 0 0 01010 112 5677776611 1
Q ss_pred CCcEEEEEeCCCeEEEEECCC--CeEEEEEe-CCCCceEEEEecCCC--CC---EEEEEeCCCeEEEEEe
Q 000703 148 DSFVLAAINGPSVLSLYNTTS--ASCMWKYD-ASPEYLSCIRRNPFD--AR---HFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 148 ~~~lLas~s~d~~i~lWd~~t--g~~i~~~~-~~~~~v~~v~fsP~d--~~---~la~~s~dG~v~~~d~ 209 (1342)
..++||++++...|.||-... .+...... .+..+|.+|+|-+.+ +. .|++++-.|.+.+|++
T Consensus 176 ~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 176 KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 238999999888888876442 22111111 134678899997643 33 7788888999988876
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=83.32 E-value=1.7 Score=47.60 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=62.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeE--------EEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVR--------GLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~--------~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
+.-|++|+.+|.|.+|+.. .+..|...+. .|.-..++.+.+ .+..++.|+.|++.-+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n------~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c---------~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWN------LEGAHSDRVCSGEESIDLGIPNGRDSSLGC---------VGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCC------ccchHHHhhhcccccceeccccccccceeE---------EeccCCceeeeccccC
Confidence 4678899999999999974 1223332221 111122223333 2345678999998776
Q ss_pred ceeeeEEeccCCC-CCeEEEEEcCCCCEEEEE--ECCCCEEEEec
Q 000703 601 INRAFRVLQKPER-APIRALRASSSGRYLLIL--FRDAPVEVWAM 642 (1342)
Q Consensus 601 ~~~~l~~l~g~h~-~~I~~i~~Spdg~~Las~--s~D~tIkvWDl 642 (1342)
+.... .+.|. .+++...++..++++++. |.|..++.|++
T Consensus 135 k~~g~---~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 135 KVLGY---VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeee---eccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 63222 23455 677778888888888888 88899999988
No 399
>PHA02713 hypothetical protein; Provisional
Probab=82.70 E-value=33 Score=43.85 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=22.8
Q ss_pred EEEeecCCEEEEEeCCC--cEEEEECCCCc
Q 000703 759 TAMAYRLPHVVMGDRSG--NIRWWDVTTGH 786 (1342)
Q Consensus 759 ~~va~dg~~LasGs~Dg--tI~lWDl~tg~ 786 (1342)
..++.+|++.|.|+.|| ++..+|+.+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 34455999999999998 88889998876
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.37 E-value=38 Score=34.60 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=74.4
Q ss_pred eEEEEcCCeEEEEeCCCc--------ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEe
Q 000703 37 LLAFASGSSISILDSRSL--------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD 108 (1342)
Q Consensus 37 llA~gs~~~V~v~d~~s~--------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~ 108 (1342)
|.+....+.|.|.+|... ..++.|..-+ .|++++=-|-. ++.....|..|+
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------------~italaaG~l~---------~~~~~D~LliGt 71 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------------EITALAAGRLK---------PDDGRDCLLIGT 71 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCC------------ceEEEEEEecC---------CCCCcCEEEEec
Confidence 444446789999998743 2455666554 57777554431 112345677776
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 109 RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 109 ~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
.. .+..+|+....-+.. ++-.. +|+++.+-.-+....-|+..+++..|.-+|.+..+..|+.++
T Consensus 72 ~t-~llaYDV~~N~d~Fy---ke~~D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 72 QT-SLLAYDVENNSDLFY---KEVPD-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred cc-eEEEEEcccCchhhh---hhCcc-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
Confidence 44 588999987665443 22335 789888865554334556667788999999987778888764
No 401
>PHA03098 kelch-like protein; Provisional
Probab=81.78 E-value=54 Score=41.54 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=50.6
Q ss_pred CCEEEEEeCCC------cEEEEeCCCCcEEEE--eeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCC
Q 000703 529 VPLVALGTQSG------AVDVVDVSANAVTAS--FSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1342)
Q Consensus 529 ~~llAsGs~DG------tI~lWDl~tg~~~~~--l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1342)
+.+++.|+.++ .+..||..++.-... +....... ++... ++++..++... .+..-+.+..||+.++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~~lyv~GG~~----~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NNRIYVIGGIY----NSISLNTVESWKPGES 368 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CCEEEEEeCCC----CCEecceEEEEcCCCC
Confidence 45667776543 577888877654321 11011111 12222 45555444321 1223357888998887
Q ss_pred ceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECC------CCEEEEec
Q 000703 601 INRAFRVLQKPERAPIRALRASSSGRYLLILFRD------APVEVWAM 642 (1342)
Q Consensus 601 ~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D------~tIkvWDl 642 (1342)
+......+..+. .. .....-++++.+.|+.+ +.+..||.
T Consensus 369 ~W~~~~~lp~~r-~~--~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 369 KWREEPPLIFPR-YN--PCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred ceeeCCCcCcCC-cc--ceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 643332221111 11 11223357777777632 35677776
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=16 Score=44.65 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=61.7
Q ss_pred EEEecCCCEEEEEec--CC-eeeccCCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCce-eeeccccc
Q 000703 721 AFALANGALGVFEVH--GR-RIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGHS-SQFSTHRE 795 (1342)
Q Consensus 721 a~~~~DgtI~lwdv~--g~-~v~d~~~~~~~~~~~~~~~~V~~va~-dg~~LasGs~DgtI~lWDl~tg~~-~~l~~H~~ 795 (1342)
..|..|..|.-||.+ +. .+.-.. +..+... ....|++- -.-+||.||.+|-||+||--..+. .-|++-..
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q----~kqy~~k-~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~ 472 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQ----SKQYSTK-NNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD 472 (644)
T ss_pred EEeecCCceEEecccccCcceeeeee----ccccccc-cccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC
Confidence 467888999999973 33 210000 0001111 12445555 233899999999999999833333 34799999
Q ss_pred cEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECC
Q 000703 796 GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1342)
Q Consensus 796 ~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~ 830 (1342)
+|+.|..+.+ | +.| .+..+..+-+-|+.
T Consensus 473 ~I~hVdvtad--G----Kwi-l~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 473 AIKHVDVTAD--G----KWI-LATCKTYLLLIDTL 500 (644)
T ss_pred ceeeEEeecc--C----cEE-EEecccEEEEEEEe
Confidence 9999999988 4 443 33356667666653
No 403
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.05 E-value=7.3 Score=49.29 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhh---cccccHH
Q 000703 1166 LAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVH---HVEHNIW 1242 (1342)
Q Consensus 1166 ~~~k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~---~~~~~~~ 1242 (1342)
--+...|.||..+++..++..++=-.|++.||.-..++.++|+++.-++...-+ .|+...-+-.++.|+ ++..+-.
T Consensus 923 ~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~-~e~~~~AE~L~S~l~ve~R~~~da~ 1001 (1243)
T COG5290 923 FKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKG-YEFNLCAELLPSDLLVEFRKAGDAE 1001 (1243)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcc-hHHHHHHHhhhhhHHHHHHHhcCHH
Confidence 344567899999999999999999999999999999999999999977766542 334444444444332 1122224
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHH
Q 000703 1243 RALILYVAAGGLQEALAALREAQHPDTAAMFVL 1275 (1342)
Q Consensus 1243 ~a~~~~~~~g~~~~~~~~l~~~~~~~~aa~~~~ 1275 (1342)
++.+.| +.+..+|..+.-+.-.|+.|-+.+.
T Consensus 1002 ~i~l~y--l~N~~eava~~ckgs~y~ea~~~a~ 1032 (1243)
T COG5290 1002 KILLTY--LENLYEAVAMDCKGSEYREAFCEAM 1032 (1243)
T ss_pred HHHHHH--HhCHHHHHHHHcccccchHHHHHHH
Confidence 555555 6678888888877778888844433
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.91 E-value=16 Score=44.58 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=49.0
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCC----------------CcEEEEEeCC--C
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPD----------------SFVLAAINGP--S 159 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~----------------~~lLas~s~d--~ 159 (1342)
+|++.+.|..|.=|+|.|+|+.++..++.+ +|-.+ -.+.|..-... ..++++...+ |
T Consensus 316 sP~~~laA~tDslGRV~LiD~~~~~vvrmW--KGYRd---Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg 390 (415)
T PF14655_consen 316 SPSGRLAAVTDSLGRVLLIDVARGIVVRMW--KGYRD---AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG 390 (415)
T ss_pred CCCCCEEEEEcCCCcEEEEECCCChhhhhh--ccCcc---ceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence 456788899888899999999999877764 34333 23344322111 1244445443 8
Q ss_pred eEEEEECCCCeEEEEEe
Q 000703 160 VLSLYNTTSASCMWKYD 176 (1342)
Q Consensus 160 ~i~lWd~~tg~~i~~~~ 176 (1342)
.|.||++++|.++..+.
T Consensus 391 ~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 391 ILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEecCCCCEEEEEE
Confidence 99999999998876554
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.69 E-value=25 Score=35.82 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCC--------eEEEEecCCCCCCCCeeEEEEeecCC--CCcEEEEEeCCCeEEEEECCCCe
Q 000703 101 HLLLAAADRHGRVALLDFRLR--------SVVLWIDPDPNPKLGIQDLCWIVSKP--DSFVLAAINGPSVLSLYNTTSAS 170 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g--------~~~~~l~~~~h~~~~V~~l~wsp~~~--~~~lLas~s~d~~i~lWd~~tg~ 170 (1342)
..-|+.+...|+|.|.+.... ..++.|.+ .+ .|.+|+-.+-.+ +.+.|+.++ ...|..||+....
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~-~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQ-EITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CC-ceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 346888889999999987533 23445443 23 788887666432 226777666 6778899998776
Q ss_pred EEEEEeCCCCceEEEEecCCC--CCEEEEEeCCCeEEEEEecC
Q 000703 171 CMWKYDASPEYLSCIRRNPFD--ARHFCVLGLKGLLLSVRVLG 211 (1342)
Q Consensus 171 ~i~~~~~~~~~v~~v~fsP~d--~~~la~~s~dG~v~~~d~~~ 211 (1342)
-+.-.+. ++-++++.+..+. ...++..|..+.|.-+|..+
T Consensus 85 d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 85 DLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 5554444 5677777774432 24555555556776665443
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.66 E-value=1.3e+02 Score=38.58 Aligned_cols=103 Identities=12% Similarity=0.149 Sum_probs=55.2
Q ss_pred CCeEEEEecCCC-----EEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCC------cEEEEECCCC
Q 000703 717 SESFAFALANGA-----LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSG------NIRWWDVTTG 785 (1342)
Q Consensus 717 ~e~la~~~~Dgt-----I~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~Dg------tI~lWDl~tg 785 (1342)
+...|+|+.||. |-.||...++-... ..++ .........+++|.+-++|+.|+ ++..+|..++
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~-----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APML-----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCccccc-CCCC-----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 456778888765 44466554432111 1010 11112334445999999998665 5678999887
Q ss_pred cee---eeccccccEEEEEEecCCCCCCCCCEEEEEECCC-----eEEEEECCCCC
Q 000703 786 HSS---QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN-----TFSVFDLDSQD 833 (1342)
Q Consensus 786 ~~~---~l~~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dg-----tI~IWDl~t~~ 833 (1342)
+-+ .+..-+.... ++.--+ ...+++|.|+ +|..+|..+.+
T Consensus 455 ~W~~~~~M~~~R~~~g-~a~~~~-------~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-VAVLNG-------KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ceeecCCcccccccce-EEEECC-------EEEEECCccCCCccceEEEEcCCCCc
Confidence 632 2322222221 222222 4456677665 37888887765
No 407
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=1.5e+02 Score=35.82 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=117.9
Q ss_pred CceEeCCCC--eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 28 GSADLSPSG--LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 28 ~a~~~s~~g--llA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
..++.++.| .++.. ..+.|.+.|..+....++..--. .-..++|+|++ ..+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------------~P~~~~~~~~~--------------~~v 130 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------------GPVGLAVDPDG--------------KYV 130 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc------------CCceEEECCCC--------------CEE
Confidence 467777777 34433 35799999977666655433211 23467788775 333
Q ss_pred EEEe---CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE-E----Ee
Q 000703 105 AAAD---RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-K----YD 176 (1342)
Q Consensus 105 ASg~---~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-~----~~ 176 (1342)
..+. .+++|-+-|..++..+.+. ..|. . | ..+++.|++. .+.++-..+++|.+.|..+..... . ..
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~-~vG~-~-P-~~~a~~p~g~--~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATI-PVGN-T-P-TGVAVDPDGN--KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEE-ecCC-C-c-ceEEECCCCC--eEEEEecCCCeEEEEeCCCcceeccccccccc
Confidence 3333 3789999999999888874 3332 3 5 7889999872 355555678999999976544331 1 11
Q ss_pred CCCCceEEEEecCCCCCEEEEE-eCC--CeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000703 177 ASPEYLSCIRRNPFDARHFCVL-GLK--GLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1342)
Q Consensus 177 ~~~~~v~~v~fsP~d~~~la~~-s~d--G~v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1342)
. ......+.++| |+.++-+. ..+ +.+...|..... .... + .+. ...
T Consensus 205 ~-~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~-----v~~~----~------------------~~~--~~~ 253 (381)
T COG3391 205 V-GTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGN-----VTAT----D------------------LPV--GSG 253 (381)
T ss_pred c-CCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCce-----EEEe----c------------------ccc--ccC
Confidence 1 12334677888 66644333 222 466655432210 0000 0 000 000
Q ss_pred cceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEEe
Q 000703 254 LYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAA 292 (1342)
Q Consensus 254 ~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~ 292 (1342)
.-..+.++|+|+.+...- ..+.+.+-|..+.+....+.
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 112348999998877764 45889999999887766554
No 408
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.34 E-value=95 Score=37.91 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=80.1
Q ss_pred CceEeCCCC-eEEEEcCCeEE-EEeCCCccee-EeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 28 GSADLSPSG-LLAFASGSSIS-ILDSRSLQLI-STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 28 ~a~~~s~~g-llA~gs~~~V~-v~d~~s~~~~-~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
..+.-+++| ++++|..+.+. -||. ++.. +.+..+.. ..++.+.|.+++ .++
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~----------~~l~~v~~~~dg--------------~l~ 295 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASA----------RRIQNMGWRADG--------------GLW 295 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCc----------cceeeeeEcCCC--------------CEE
Confidence 345667888 88999876554 3543 2221 22222222 268999998764 444
Q ss_pred EEEeCCCcEEEEeCCCCeE-----EEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC--
Q 000703 105 AAADRHGRVALLDFRLRSV-----VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA-- 177 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~-----~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~-- 177 (1342)
+.+ .+|.+ +|....|+. ....... .....+.++.|.+++ .+++ ++..|.+.... +.| .-|+...
T Consensus 296 l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~---~~~a-~G~~G~v~~s~-D~G-~tW~~~~~~ 366 (398)
T PLN00033 296 LLT-RGGGL-YVSKGTGLTEEDFDFEEADIK-SRGFGILDVGYRSKK---EAWA-AGGSGILLRST-DGG-KSWKRDKGA 366 (398)
T ss_pred EEe-CCceE-EEecCCCCcccccceeecccC-CCCcceEEEEEcCCC---cEEE-EECCCcEEEeC-CCC-cceeEcccc
Confidence 444 56665 666666642 2222111 112258999998765 5555 44566655543 334 3455532
Q ss_pred --CCCceEEEEecCCCCCEEEEEeCCCeEEEE
Q 000703 178 --SPEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1342)
Q Consensus 178 --~~~~v~~v~fsP~d~~~la~~s~dG~v~~~ 207 (1342)
-..++..+.|.+ + .+..+.+.+|.|+-+
T Consensus 367 ~~~~~~ly~v~f~~-~-~~g~~~G~~G~il~~ 396 (398)
T PLN00033 367 DNIAANLYSVKFFD-D-KKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCCcceeEEEEcC-C-CceEEEeCCcEEEEe
Confidence 134677888865 4 455555667887654
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.39 E-value=1.1e+02 Score=35.49 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=96.0
Q ss_pred CCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCC
Q 000703 23 SRNNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSS 100 (1342)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~ 100 (1342)
...|+.++.|+|+. |++......-.|+=...|+++.+++..-- +.-..|.|.-+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------~DpE~Ieyig~-------------- 139 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------SDPETIEYIGG-------------- 139 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----------CChhHeEEecC--------------
Confidence 34579999999986 77777766656666678999888653211 02234555543
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEE-----EecC--CCC-CCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCe-E
Q 000703 101 HLLLAAADRHGRVALLDFRLRSVVL-----WIDP--DPN-PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS-C 171 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~g~~~~-----~l~~--~~h-~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~-~ 171 (1342)
|++.++--+++++.+.-+.....+. .+++ ..+ .+ +-.+++|.|.+ +.|..+-+-+-+.|+.+.-+. .
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~-GfEGlA~d~~~---~~l~~aKEr~P~~I~~~~~~~~~ 215 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNK-GFEGLAWDPVD---HRLFVAKERNPIGIFEVTQSPSS 215 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCc-CceeeecCCCC---ceEEEEEccCCcEEEEEecCCcc
Confidence 4566666667777776654442111 2222 223 33 77899999976 556666666666666654222 1
Q ss_pred E--EEEeCC-------CCceEEEEecCCCCCEEEEEeCCCeEEEEEecCC
Q 000703 172 M--WKYDAS-------PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ 212 (1342)
Q Consensus 172 i--~~~~~~-------~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~ 212 (1342)
+ .....+ -..++++.|++-.+..++..-.++.+.-.|..+.
T Consensus 216 l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 216 LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1 111111 1245688899866666666666677776666553
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.87 E-value=8.9 Score=31.07 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=26.3
Q ss_pred ccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000703 795 EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1342)
Q Consensus 795 ~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t 831 (1342)
|.|++++|||.... ...|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~---~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG---NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCc---ccEEEEEccCCeEEEEEccc
Confidence 57999999987321 14677777889999999985
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.84 E-value=8.8 Score=31.11 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=27.3
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR 121 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g 121 (1342)
.|.+++|||++.. ..+||-+-..|.|-|+|++++
T Consensus 2 AvR~~kFsP~~~~-----------~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGG-----------NDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCc-----------ccEEEEEccCCeEEEEEcccC
Confidence 5889999987522 267888888999999999853
No 412
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=72.75 E-value=29 Score=45.60 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHHHHHhhhcc---cCCC-CchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChh------hh
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLS---TSPE-SSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLS------GT 1185 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~---~~pe-~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~------gv 1185 (1342)
..++.-+...|+.++|++++-+ ..++ +..-|.-.++||+- .+..+...++.+. ++..|...+ =+
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~-----~~~~~~~~~l~~~-~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG-----LGSARAGQQLHCC-VLKTGVVGDTFVSCALI 266 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc-----CCcHHHHHHHHHH-HHHhCCCccceeHHHHH
Confidence 4578888889999999996544 2222 22344455555532 2233333233332 344332211 14
Q ss_pred HHHHhcCchHHHHHHhh------------------ccCcHHHHHHHHH
Q 000703 1186 HLLCAVGRYQEACSQLQ------------------DAGCWTDAATLAA 1215 (1342)
Q Consensus 1186 ~~~~~~g~~~~a~~~l~------------------~~~~W~~a~~la~ 1215 (1342)
..||++|++++|.+.+. ..|++.+|+.+=+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67888888888877554 3677777776653
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.39 E-value=88 Score=37.69 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=12.9
Q ss_pred CeeEEEEeecCCCCcEEEEEe
Q 000703 136 GIQDLCWIVSKPDSFVLAAIN 156 (1342)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s 156 (1342)
....++|.|++ ++.++.+
T Consensus 125 ~~~~l~~gpDG---~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDG---WLYFNHG 142 (367)
T ss_pred cccCceECCCC---CEEEecc
Confidence 57889999987 6555544
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.17 E-value=20 Score=39.95 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=45.8
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCce--ee------ec-------cccccEEEEEEecCCCCCCCCCEEEEEECCC
Q 000703 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHS--SQ------FS-------THREGIRRIKFSPVVPGDRSRGRIAVLFHDN 822 (1342)
Q Consensus 758 V~~va~dg~~LasGs~DgtI~lWDl~tg~~--~~------l~-------~H~~~V~~v~fSPd~~g~~~~~~Las~s~Dg 822 (1342)
+..+..++++|++-..+|.+++||+.+++. .. +. .....|..+.++.+ +..++...+|
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-------G~PiV~lsng 87 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-------GVPIVTLSNG 87 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-------CCEEEEEeCC
Confidence 555666899999999999999999998763 11 12 35567777777755 3333334556
Q ss_pred eEEEEECCC
Q 000703 823 TFSVFDLDS 831 (1342)
Q Consensus 823 tI~IWDl~t 831 (1342)
....||.+-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 677777544
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.68 E-value=2.8e+02 Score=34.15 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe-----EEEEecCCCCCCCCeeEEEEeec--CCCCcEEEEEeCCCeEEEEECC--CCe
Q 000703 100 SHLLLAAADRHGRVALLDFRLRS-----VVLWIDPDPNPKLGIQDLCWIVS--KPDSFVLAAINGPSVLSLYNTT--SAS 170 (1342)
Q Consensus 100 ~g~~LASg~~dG~V~vWD~~~g~-----~~~~l~~~~h~~~~V~~l~wsp~--~~~~~lLas~s~d~~i~lWd~~--tg~ 170 (1342)
+...|+.|+-+|.++|.+...+. .+.+..+ +.||..|..-.- +.+...||+.+ +..+.++.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l----~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL----KDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec----CCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEecCCC
Confidence 35689999999999999986543 2333222 239999986542 11226788877 6788888873 222
Q ss_pred ----------EEEEEeCCCCceEEEEecCCCC----CEEEEEeCCCeEEEEE
Q 000703 171 ----------CMWKYDASPEYLSCIRRNPFDA----RHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 171 ----------~i~~~~~~~~~v~~v~fsP~d~----~~la~~s~dG~v~~~d 208 (1342)
.+..... +.....+..-||.+ ..+|+=+.||.+.+++
T Consensus 111 ~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe 161 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE 161 (418)
T ss_pred cccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEe
Confidence 1222223 23444666777754 6788889999999986
No 416
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=68.76 E-value=30 Score=45.54 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCHHHHHhhhcc-----cCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHh-cCCh------h
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLS-----TSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRN-DRSL------S 1183 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~-----~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~-~~~~------~ 1183 (1342)
..++.-+...|+.++|++++-+ ..|+... |.--+.|| .-.+..+.+.++.-. |... |..- -
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~-----~~~g~~~~a~~~f~~-m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-FLAVLSAC-----RYSGLSEQGWEIFQS-MSENHRIKPRAMHYAC 467 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHH-----hcCCcHHHHHHHHHH-HHHhcCCCCCccchHh
Confidence 3577788888998888886543 3444222 22233333 334455555444433 3332 2211 1
Q ss_pred hhHHHHhcCchHHHHHHhhccCc------HHHHHHHHHhhcCCccHHHHHHHHHHhhhc--ccc--cHHHHHHHHHHhCC
Q 000703 1184 GTHLLCAVGRYQEACSQLQDAGC------WTDAATLAATHLKGSDYARVLQRWADHVHH--VEH--NIWRALILYVAAGG 1253 (1342)
Q Consensus 1184 gv~~~~~~g~~~~a~~~l~~~~~------W~~a~~la~~~l~~~~~~~~~~~~~~~l~~--~~~--~~~~a~~~~~~~g~ 1253 (1342)
=|.+||..|+.++|.++++..+. |.--+.....+=+-+ .-++.+++++. ++. .+---+.+|.+.|.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~----~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE----LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH----HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 24788888999999888876543 444333333332112 22233444422 221 12345567888888
Q ss_pred HHHHHHHHHhc
Q 000703 1254 LQEALAALREA 1264 (1342)
Q Consensus 1254 ~~~~~~~l~~~ 1264 (1342)
+.+|.+++.+|
T Consensus 544 ~~~A~~v~~~m 554 (697)
T PLN03081 544 QAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHH
Confidence 88888888763
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.75 E-value=1.2e+02 Score=34.95 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCCEEEEEe-----CCCcEEEEeCCCC-cEEEEeeecCCCeEEEEEcCCCcEEEEecCCcc---------cccCcccCEE
Q 000703 528 AVPLVALGT-----QSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVN---------EKSGGYINRL 592 (1342)
Q Consensus 528 ~~~llAsGs-----~DGtI~lWDl~tg-~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~---------~~sg~~~~~i 592 (1342)
+|.+|...- .-|.|-|||...+ +.+.++..|--.-..+.|.+||+.+..+..... .+...-.-.+
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 577665432 2378999998755 356688888766678999999998876653110 0001112346
Q ss_pred EEEEcCCCceeeeEEecc-CCCCCeEEEEEcCCCCEEEEE
Q 000703 593 VVTCLRSGINRAFRVLQK-PERAPIRALRASSSGRYLLIL 631 (1342)
Q Consensus 593 ~lwD~~tG~~~~l~~l~g-~h~~~I~~i~~Spdg~~Las~ 631 (1342)
.+-|..+|......++.. -+.-.|+.++..+||+.++-+
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 777878887322222210 033457778888887766544
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.25 E-value=75 Score=41.74 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=44.7
Q ss_pred CCCcEEEEEeCCCcEEE-----Ee----CCCCeE--E-EEecC-----CCCCCCCeeEEEEeecCCCCcEEEEEeCCCeE
Q 000703 99 SSHLLLAAADRHGRVAL-----LD----FRLRSV--V-LWIDP-----DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1342)
Q Consensus 99 p~g~~LASg~~dG~V~v-----WD----~~~g~~--~-~~l~~-----~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1342)
|+|.+||-.|..|.+.+ |- +..|.. . +.+.+ ..+....|..+.|.|.+..+..|++..+|+++
T Consensus 94 ~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 94 PTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred CCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 45688888888775543 31 112221 1 11111 11223379999999997544677889999999
Q ss_pred EEEECCCC
Q 000703 162 SLYNTTSA 169 (1342)
Q Consensus 162 ~lWd~~tg 169 (1342)
++||+...
T Consensus 174 R~y~~~~~ 181 (717)
T PF10168_consen 174 RLYDISDP 181 (717)
T ss_pred EEEecCCC
Confidence 99999643
No 419
>PHA03098 kelch-like protein; Provisional
Probab=67.03 E-value=2.5e+02 Score=35.54 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=29.9
Q ss_pred CCEEEEEecCCeeeccCCCCCCCccccccceEEEEeecCCEEEEEeCCC--------cEEEEECCCCce
Q 000703 727 GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSG--------NIRWWDVTTGHS 787 (1342)
Q Consensus 727 gtI~lwdv~g~~v~d~~~~~~~~~~~~~~~~V~~va~dg~~LasGs~Dg--------tI~lWDl~tg~~ 787 (1342)
..+..||...++.... ..+|.. .. ...++..++.+.+.|+.++ .+.+||+.+++-
T Consensus 406 ~~v~~yd~~t~~W~~~-~~~p~~----r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 406 KTVECFSLNTNKWSKG-SPLPIS----HY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred ceEEEEeCCCCeeeec-CCCCcc----cc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 3467788765544321 112211 11 1223445787778876532 388999988763
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=66.89 E-value=2.3e+02 Score=32.20 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=64.5
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEE
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD-RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~-~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1342)
.+...++||++ ..+|... .++.-.||-...+.....+ ..+ . .+..-.|.+++ .+.++.
T Consensus 25 ~~~s~AvS~dg--------------~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~-~l~~PS~d~~g---~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDG--------------SRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--G-SLTRPSWDPDG---WVWTVD 83 (253)
T ss_pred cccceEECCCC--------------CeEEEEEEcCCCCEEEEEcCCCcceee-ccC--C-ccccccccCCC---CEEEEE
Confidence 67888999875 4454433 3333334443333333332 122 2 56677898876 777777
Q ss_pred eCCCeEEEEE-CCCCeEE-EEEeCC--CCceEEEEecCCCCCEEEEEeC---CCeEEEE
Q 000703 156 NGPSVLSLYN-TTSASCM-WKYDAS--PEYLSCIRRNPFDARHFCVLGL---KGLLLSV 207 (1342)
Q Consensus 156 s~d~~i~lWd-~~tg~~i-~~~~~~--~~~v~~v~fsP~d~~~la~~s~---dG~v~~~ 207 (1342)
..+...+++. ..+|+.. ...... ...|..|+++| |+.++|.... ++.|++-
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 84 DGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred cCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEE
Confidence 7777777773 3344322 122221 12799999999 9999998862 4666663
No 421
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.19 E-value=59 Score=40.08 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=89.5
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-C
Q 000703 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-R 121 (1342)
Q Consensus 43 ~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~-g 121 (1342)
.+.+.=.|+.+|+++...+-|. .|+-|.+.|+.+...+ .+.+.+ .|=.|..|.-||.+- |
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~------------di~mv~~t~d~K~~Ql-----~~e~Tl--vGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED------------DINMVDITPDFKFAQL-----TSEQTL--VGLSDNSVFRIDPRVQG 415 (644)
T ss_pred cCcceeeecccceeeeEeeccC------------CcceeeccCCcchhcc-----cccccE--EeecCCceEEecccccC
Confidence 3577778889999998888887 4889999999765332 223322 355678899999863 2
Q ss_pred e-EEEEecCCCCC---CCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEE-EEeCCCCceEEEEecCCCCCEEE
Q 000703 122 S-VVLWIDPDPNP---KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-KYDASPEYLSCIRRNPFDARHFC 196 (1342)
Q Consensus 122 ~-~~~~l~~~~h~---~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-~~~~~~~~v~~v~fsP~d~~~la 196 (1342)
. .+.+- ++|. +.--+ ||...++ -++|+++.+|-|+|||- .|+.-. .+++-.++|.-+..+. ||..+.
T Consensus 416 ~~kl~~~--q~kqy~~k~nFs--c~aTT~s--G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta-dGKwil 487 (644)
T KOG2395|consen 416 KNKLAVV--QSKQYSTKNNFS--CFATTES--GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA-DGKWIL 487 (644)
T ss_pred cceeeee--eccccccccccc--eeeecCC--ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec-cCcEEE
Confidence 2 33332 2221 21122 2333332 47899999999999997 555432 2444457888887776 888876
Q ss_pred EEeCCCeEEEEEec
Q 000703 197 VLGLKGLLLSVRVL 210 (1342)
Q Consensus 197 ~~s~dG~v~~~d~~ 210 (1342)
..+ +..+++.|..
T Consensus 488 ~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 488 ATC-KTYLLLIDTL 500 (644)
T ss_pred Eec-ccEEEEEEEe
Confidence 655 4566666653
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.08 E-value=4.6e+02 Score=35.02 Aligned_cols=172 Identities=13% Similarity=0.153 Sum_probs=96.2
Q ss_pred CeeEEEEe---ecC-CCCcEEEEEeCCCeEEEEE------CCC---------CeEEEEEeC---CCCceEEEEecCCCCC
Q 000703 136 GIQDLCWI---VSK-PDSFVLAAINGPSVLSLYN------TTS---------ASCMWKYDA---SPEYLSCIRRNPFDAR 193 (1342)
Q Consensus 136 ~V~~l~ws---p~~-~~~~lLas~s~d~~i~lWd------~~t---------g~~i~~~~~---~~~~v~~v~fsP~d~~ 193 (1342)
||..|+|. ... ..+++|++-.. ..+.|.. ... ..++..+.. +..+...|+|+|.+.+
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Confidence 89999998 321 12256666553 4455555 111 123444432 1346779999999999
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEec-CcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000703 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQT-DCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1342)
Q Consensus 194 ~la~~s~dG~v~~~d~~~~~~~~~~~k~~~i~~-~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~ 272 (1342)
+||+....|..-+||+.+..... ...+.... ..+.+ +. .+. ......++.|.++-..++. .
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~--~~~~~~~~~~~gsi--~~----------d~~---e~s~w~rI~W~~~~~~lLv-~ 221 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRK--SSNLRLSRNISGSI--IF----------DPE---ELSNWKRILWVSDSNRLLV-C 221 (765)
T ss_pred eEEEEeccCcEEEEEeccccccC--CcceeeccCCCccc--cC----------CCc---ccCcceeeEecCCCCEEEE-E
Confidence 99999999999999983311100 01111100 00011 00 000 0123457789888655544 4
Q ss_pred cCCeEEEEEccCCceeEEEecCCCccceEEEEEcCC--CCEEEEEeCCCcEEEEEccC
Q 000703 273 FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN--NDLLYCAHLDGKLSIWRRKE 328 (1342)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd--g~~L~s~~~DgtI~lW~~~~ 328 (1342)
..+.+.++|++++.....+...+....+.++..+|+ +..++.. ...|..-+.++
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 668899999998865432333445577889988886 3333332 24554345543
No 423
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=63.96 E-value=77 Score=39.69 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=76.6
Q ss_pred eEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeC
Q 000703 30 ADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1342)
Q Consensus 30 ~~~s~~gllA~gs~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1342)
+-.-++|.|.+++++.+..+|.. |+.+........ . ..|++|- .+-|+|.+|+-+..
T Consensus 153 ~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~~~-----------~---~~~HHD~--------~~l~nGn~L~l~~~ 209 (477)
T PF05935_consen 153 FKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLPGG-----------Y---YDFHHDI--------DELPNGNLLILASE 209 (477)
T ss_dssp EEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--TT-----------E---E-B-S-E--------EE-TTS-EEEEEEE
T ss_pred eeEcCCCCEEEecCCceEEEcCC-CCEEEeeecCCc-----------c---ccccccc--------EECCCCCEEEEEee
Confidence 55668886556666888888875 666544433332 0 1122210 11256677776661
Q ss_pred -------------CCcEEEEeCCCCeEEEEecCCCCC----C--------------------CCeeEEEEeecCCCCcEE
Q 000703 110 -------------HGRVALLDFRLRSVVLWIDPDPNP----K--------------------LGIQDLCWIVSKPDSFVL 152 (1342)
Q Consensus 110 -------------dG~V~vWD~~~g~~~~~l~~~~h~----~--------------------~~V~~l~wsp~~~~~~lL 152 (1342)
.-.|...| .+|+.+..+....|- . ..++++.+.+.+ ..+|
T Consensus 210 ~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d--d~ii 286 (477)
T PF05935_consen 210 TKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD--DSII 286 (477)
T ss_dssp TTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT--TEEE
T ss_pred cccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC--CeEE
Confidence 12366677 778777665432221 0 147888888743 2788
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEeCCCC---c----e-EE------------EEecCCCCCEEEEEeCCC---eEEEEE
Q 000703 153 AAINGPSVLSLYNTTSASCMWKYDASPE---Y----L-SC------------IRRNPFDARHFCVLGLKG---LLLSVR 208 (1342)
Q Consensus 153 as~s~d~~i~lWd~~tg~~i~~~~~~~~---~----v-~~------------v~fsP~d~~~la~~s~dG---~v~~~d 208 (1342)
+|+-.-+.|...|-.+|+..|.+..+.+ . + +- -.|+.+-+.+-+..-.+| .|.++|
T Consensus 287 vSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFD 365 (477)
T PF05935_consen 287 VSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFD 365 (477)
T ss_dssp EEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE
T ss_pred EEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEE
Confidence 8887777999999889999998865422 1 1 11 123334456666666677 777766
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.85 E-value=4.8e+02 Score=34.79 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=40.8
Q ss_pred cccCEEEEEEcCCCceeeeEEecc-CCC--------CCeEEEEEcC-CCC---EEEEEECCCCEEEEeccCCcceeeec
Q 000703 587 GYINRLVVTCLRSGINRAFRVLQK-PER--------APIRALRASS-SGR---YLLILFRDAPVEVWAMTKNPIMLRSL 652 (1342)
Q Consensus 587 ~~~~~i~lwD~~tG~~~~l~~l~g-~h~--------~~I~~i~~Sp-dg~---~Las~s~D~tIkvWDl~kt~~~l~~l 652 (1342)
.+.+.|.-.|++||+.+ ...+. +|. +++ -+.+.- +|+ .++.+.+++.+.+.|- ++++.+...
T Consensus 411 ~y~~slvALD~~TGk~~--W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr-~tG~~l~~~ 485 (764)
T TIGR03074 411 KYSSSLVALDATTGKER--WVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDR-RTGEPIVPV 485 (764)
T ss_pred cccceEEEEeCCCCceE--EEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEEC-CCCCEEeec
Confidence 35678889999999844 22222 221 122 223333 664 7888999999999998 799877643
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.63 E-value=1.3e+02 Score=35.39 Aligned_cols=107 Identities=18% Similarity=0.303 Sum_probs=52.0
Q ss_pred ceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeee-ccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEE-CCC
Q 000703 756 GLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQF-STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD-LDS 831 (1342)
Q Consensus 756 ~~V~~va~--dg~~LasGs~DgtI~lWDl~tg~~~~l-~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWD-l~t 831 (1342)
+.+..+.. ||++++++..-....-||.-...-... ..-..+|..+.|+|+ +.|-.....|.|+.=| ...
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-------~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-------GNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-------S-EEEEETTTEEEEEE-TTE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-------CCEEEEeCCcEEEEccCCCC
Confidence 45666655 888777776655556788754322222 234689999999999 3344444777777666 222
Q ss_pred CCcccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcE
Q 000703 832 QDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSF 876 (1342)
Q Consensus 832 ~~~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtI 876 (1342)
.+............+..+++++|.++ +.+ . .++..|++
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~-----~~~-w-a~gg~G~l 255 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPP-----NEI-W-AVGGSGTL 255 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSS-----S-E-E-EEESTT-E
T ss_pred ccccccccCCcccCceeeEEEEecCC-----CCE-E-EEeCCccE
Confidence 22111111011112344899999986 432 3 45666654
No 426
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=62.45 E-value=1.2e+02 Score=35.58 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=10.5
Q ss_pred HHHhCCHHHHHHHHHh
Q 000703 1248 YVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1248 ~~~~g~~~~~~~~l~~ 1263 (1342)
++..|++.+|++.|..
T Consensus 224 ~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 224 ELAKGDYQKAVEALER 239 (389)
T ss_pred HHhccchHHHHHHHHH
Confidence 3346777777777764
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=62.44 E-value=3.1e+02 Score=32.56 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=80.5
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEE-EeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcE
Q 000703 26 NFGSADLSPSG-LLAFASGSSISI-LDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1342)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v-~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1342)
.+.++...|+| ++++|..+.+.. +|. .++.-..+..+.. ..++.+.+.|++ ..
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~----------~~l~~i~~~~~g--------------~~ 228 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSS----------RRLQSMGFQPDG--------------NL 228 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCc----------ccceeeeEcCCC--------------CE
Confidence 46678888988 778887776543 222 2232233333332 278999998764 44
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCC-CCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC----C
Q 000703 104 LAAADRHGRVALLDFRLRSVVLWIDPD-PNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA----S 178 (1342)
Q Consensus 104 LASg~~dG~V~vWD~~~g~~~~~l~~~-~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~----~ 178 (1342)
++.| ..|.+++=....|..-.....+ ......+.++.|.+++ .+++++ .++.+. ...+.|+ -|.... -
T Consensus 229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~---~~~~~G-~~G~v~-~S~d~G~-tW~~~~~~~~~ 301 (334)
T PRK13684 229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG---EIWAGG-GNGTLL-VSKDGGK-TWEKDPVGEEV 301 (334)
T ss_pred EEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC---CEEEEc-CCCeEE-EeCCCCC-CCeECCcCCCC
Confidence 5544 5676654334455433322111 1111268888998854 555544 456543 4444443 344321 1
Q ss_pred CCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 179 ~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
+..+..+.|.. + ....+.+..|.|+.++
T Consensus 302 ~~~~~~~~~~~-~-~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 302 PSNFYKIVFLD-P-EKGFVLGQRGVLLRYV 329 (334)
T ss_pred CcceEEEEEeC-C-CceEEECCCceEEEec
Confidence 23466666654 3 4445566679888764
No 428
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=62.35 E-value=21 Score=41.32 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHh
Q 000703 1242 WRALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1242 ~~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
.++..+|+.+|.+.+|++++.+
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 4777788889999999998875
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=62.21 E-value=3.2 Score=53.07 Aligned_cols=141 Identities=17% Similarity=0.310 Sum_probs=74.7
Q ss_pred CeEEEEeCC--CcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC
Q 000703 44 SSISILDSR--SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR 121 (1342)
Q Consensus 44 ~~V~v~d~~--s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g 121 (1342)
+...|||+. .|++...|.-|.....| ..+.-|.|.|- .++..++--+..+|.|+|-.....
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~g------s~~~~V~wcp~-----------~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYG------SDPQLVSWCPI-----------AVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCC------CCcceeeeccc-----------ccccceeeeccCCCceeEeeechH
Confidence 345677764 45554444444321111 25677888874 245567788888999987666443
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeE-EEE-EeCCCCceEE-EEecCCC-CCEEEE
Q 000703 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWK-YDASPEYLSC-IRRNPFD-ARHFCV 197 (1342)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~-~~~~~~~v~~-v~fsP~d-~~~la~ 197 (1342)
.. .+ +.+|+. .+.+++|...|- ..|++.+.||++..|-...|-. .|. +..+.....| .-|-|.| ..++|.
T Consensus 216 ~~--~l-~rsHs~-~~~d~a~~~~g~--~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~ 289 (1283)
T KOG1916|consen 216 LR--SL-FRSHSQ-RVTDMAFFAEGV--LKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCW 289 (1283)
T ss_pred HH--HH-HHhcCC-CcccHHHHhhch--hhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceee
Confidence 22 22 345776 777777754431 3445555555555555544432 111 1111111122 2356666 456676
Q ss_pred EeCCCeEEEE
Q 000703 198 LGLKGLLLSV 207 (1342)
Q Consensus 198 ~s~dG~v~~~ 207 (1342)
.+++..+...
T Consensus 290 lc~~~~~~~v 299 (1283)
T KOG1916|consen 290 LCHKQEILVV 299 (1283)
T ss_pred eeccccccCC
Confidence 6666655543
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.47 E-value=3e+02 Score=31.61 Aligned_cols=200 Identities=12% Similarity=0.107 Sum_probs=111.8
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEecCCCC
Q 000703 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHG--RVALLDFRLRSVVLWIDPDPN 132 (1342)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG--~V~vWD~~~g~~~~~l~~~~h 132 (1342)
+++.+++..+. .+.-.+.|.++ |.++-|.+.-| .|+.+|..+|+.+....++..
T Consensus 34 ~vv~~ypHd~~----------aFTQGL~~~~~--------------g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~ 89 (264)
T PF05096_consen 34 EVVETYPHDPT----------AFTQGLEFLDD--------------GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR 89 (264)
T ss_dssp EEEEEEE--TT-----------EEEEEEEEET--------------TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT
T ss_pred EEEEECCCCCc----------ccCccEEecCC--------------CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc
Confidence 55667764333 37888888755 46788888777 799999999998877655431
Q ss_pred CCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEecCC
Q 000703 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ 212 (1342)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~~~~ 212 (1342)
- =-.+++...+ ++..-.-.++...+||..+-+.+.++.+ ...-+.++. |+..|........++.+|...-
T Consensus 90 -~-FgEGit~~~d----~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 90 -Y-FGEGITILGD----KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp ----EEEEEEETT----EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred -c-cceeEEEECC----EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCccc
Confidence 1 1233343321 3433344578899999999988888877 344556663 6677777655667877764321
Q ss_pred cccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEccCCceeEEE
Q 000703 213 KEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSA 291 (1342)
Q Consensus 213 ~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~-~d~~I~iwDl~t~~~l~~~ 291 (1342)
...+.+.+..+...+. .+..+-|- +|. +.+.. ....|..-|.++|+.++.+
T Consensus 160 ----~~~~~i~V~~~g~pv~----------------------~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 160 ----KEVRTIQVTDNGRPVS----------------------NLNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp ----SEEEEEE-EETTEE-------------------------EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEEEE
T ss_pred ----ceEEEEEEEECCEECC----------------------CcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 1133333321110000 12333343 443 33333 4678899999999998877
Q ss_pred ecCC-------C------ccceEEEEEcCCCCEEEEEe
Q 000703 292 ALPR-------G------CAKFLDVLADPNNDLLYCAH 316 (1342)
Q Consensus 292 ~l~~-------~------~~~~~~v~~~pdg~~L~s~~ 316 (1342)
.+.. . ..-.-.++..|+++.|+..+
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4310 0 12245688877776555443
No 431
>PRK10115 protease 2; Provisional
Probab=60.66 E-value=5.2e+02 Score=34.09 Aligned_cols=109 Identities=9% Similarity=0.129 Sum_probs=60.9
Q ss_pred CCCEEEEEeC-----CCcEEEEeCCCCcEEEEeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCce
Q 000703 528 AVPLVALGTQ-----SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN 602 (1342)
Q Consensus 528 ~~~llAsGs~-----DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~ 602 (1342)
++++||.+.. .-+|++-|+.+|..+...- ...-..++|++|++-+.++.... .......+..+++.|+..
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChh
Confidence 5778876532 3368899998886432211 11114699998886444443211 011335788999988832
Q ss_pred eeeEEeccCCCCCeE-EEEEcCCCCEEEEEECC---CCEEEEec
Q 000703 603 RAFRVLQKPERAPIR-ALRASSSGRYLLILFRD---APVEVWAM 642 (1342)
Q Consensus 603 ~~l~~l~g~h~~~I~-~i~~Spdg~~Las~s~D---~tIkvWDl 642 (1342)
.-...+.+.. .... .+..+.|++++++.+.. +.+.+++.
T Consensus 212 ~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 212 QDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred HCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 1222223222 2233 44556689988765443 46777774
No 432
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=60.26 E-value=3.8e+02 Score=32.46 Aligned_cols=114 Identities=10% Similarity=0.139 Sum_probs=58.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeeecCCCeEEEEEc--CCCcEEEEecCCccccc-------------CcccCEEEE
Q 000703 530 PLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWL--GNSRLVSFSYSQVNEKS-------------GGYINRLVV 594 (1342)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~l~gH~~~V~~l~fs--~d~~llS~s~d~~~~~s-------------g~~~~~i~l 594 (1342)
+.+.---.+.+|+-.|+.|++....+.....-+-...|. .|++.+......-.+.. ......|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 343333344578888998888777777777666556673 45555543321000000 112356778
Q ss_pred EEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCCC-----EEEEeccCCcc
Q 000703 595 TCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAP-----VEVWAMTKNPI 647 (1342)
Q Consensus 595 wD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~t-----IkvWDl~kt~~ 647 (1342)
-|+.||+.+.+-. ....+.-+.|||..--++.-...|+ -|||=+...+.
T Consensus 173 idl~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 173 IDLKTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EETTT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred EECCCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 8999998544432 4568889999997666665544442 37786633343
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.58 E-value=39 Score=43.05 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=44.0
Q ss_pred cCCCceEEEEcCCeEEEEEccC----CceeEEEecCCC--------------------ccceEEEEEcC----CCCEEEE
Q 000703 263 PHWRHIIFVTFPRELVVFDLQY----ETPLFSAALPRG--------------------CAKFLDVLADP----NNDLLYC 314 (1342)
Q Consensus 263 pdg~~ll~~~~d~~I~iwDl~t----~~~l~~~~l~~~--------------------~~~~~~v~~~p----dg~~L~s 314 (1342)
++...++.+..||.+....... +........... ......+...+ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666888888999999888875 222211111000 11223333444 6779999
Q ss_pred EeCCCcEEEEEccCCceeeeE
Q 000703 315 AHLDGKLSIWRRKEGEQVHVM 335 (1342)
Q Consensus 315 ~~~DgtI~lW~~~~g~~~~~~ 335 (1342)
.+.|+++|+|+.+++.++..+
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999876654
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=59.36 E-value=3.3e+02 Score=34.15 Aligned_cols=102 Identities=11% Similarity=-0.095 Sum_probs=50.0
Q ss_pred CCEEEEEeCCC-----cEEEEeCCCCcEEE--EeeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCEEEEEEcCCCc
Q 000703 529 VPLVALGTQSG-----AVDVVDVSANAVTA--SFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1342)
Q Consensus 529 ~~llAsGs~DG-----tI~lWDl~tg~~~~--~l~gH~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1342)
+.++++|+.++ ++..||..++.-.. .+....... ++.. -++.+...+... + .+.+..||..+++
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~~iYviGG~~-----~--~~sve~ydp~~n~ 342 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANNKLYVVGGLP-----N--PTSVERWFHGDAA 342 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECCEEEEECCcC-----C--CCceEEEECCCCe
Confidence 45667777553 57788887765322 111111111 1111 245554443321 0 1357788887765
Q ss_pred eeeeEEeccCCCCCeEEEEEcCCCCEEEEEECCC---CEEEEec
Q 000703 602 NRAFRVLQKPERAPIRALRASSSGRYLLILFRDA---PVEVWAM 642 (1342)
Q Consensus 602 ~~~l~~l~g~h~~~I~~i~~Spdg~~Las~s~D~---tIkvWDl 642 (1342)
...+..+.. ..-......-+|+..++|+.++ +++.||.
T Consensus 343 W~~~~~l~~---~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 343 WVNMPSLLK---PRCNPAVASINNVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred EEECCCCCC---CCcccEEEEECCEEEEecCcCCCCccEEEEeC
Confidence 433322221 1111122334678888887653 4677776
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.33 E-value=1.7e+02 Score=36.24 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred EEcCCeEEEEeCCCcce-eEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCC---CCCCCCCcEEEEEeCCCcEEE
Q 000703 40 FASGSSISILDSRSLQL-ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS---TEPGSSHLLLAAADRHGRVAL 115 (1342)
Q Consensus 40 ~gs~~~V~v~d~~s~~~-~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s---~~~~p~g~~LASg~~dG~V~v 115 (1342)
+|-|+.+..||.++.-+ +..+.+.+++ +.+..+ |..-...|+... +++ ..-++.|..+|-+|.+|.+..
T Consensus 57 ~~~gD~lf~Wd~~ds~Llv~~lR~~~~~--~~~~a~---~q~q~l~P~~~V--~feV~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 57 FGLGDELFLWDGEDSSLLVVRLRGPSGG--GEEPAL---SQYQRLLPINPV--LFEVYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred cccCCEEEEEecCcceEEEEEeccCCCC--cccccc---cccceeccCCcc--eEEEEEEEecCCCceEEEecCCeeEEE
Confidence 34556888899876543 4556665442 111111 111111222110 000 012466788998899997653
Q ss_pred -----Ee----CCCCeEE---EEecC-----CCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 116 -----LD----FRLRSVV---LWIDP-----DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 116 -----WD----~~~g~~~---~~l~~-----~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
|- +.+|+.+ +++.+ ...+.-.+...+|.|+.--...|....+|++|++||...-+-+|...+
T Consensus 130 eLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 130 ELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 43 2445211 12211 111222577889999862114666788899999999998887776654
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=57.27 E-value=1.4e+02 Score=33.14 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.4
Q ss_pred ccCC-CceEEEEcCCeEEEEEccC--CceeEEEecCCCccceEEEEEcCCCCEEEEEeCCC
Q 000703 262 SPHW-RHIIFVTFPRELVVFDLQY--ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1342)
Q Consensus 262 Spdg-~~ll~~~~d~~I~iwDl~t--~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1342)
...| ..|..+....+|.+||++. .+.+.+++.- +.+.++..|.-|++|+|.-++.
T Consensus 24 c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 24 CCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred eccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeec
Confidence 3335 3444557788999999983 3445555432 5678999999999999976553
No 437
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=56.97 E-value=1.8e+02 Score=38.16 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCHHHHHhh---hcccCCCCchhH
Q 000703 1116 QNRVHELVSVGNLEAAVSL---LLSTSPESSYFY 1146 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~l---Ll~~~pe~~~~~ 1146 (1342)
..++..+...|+.++|++. ++...|+++..+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 4566677777887777772 445666655444
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.65 E-value=2.1e+02 Score=32.13 Aligned_cols=142 Identities=7% Similarity=-0.036 Sum_probs=78.1
Q ss_pred CCceEeCCCCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEE
Q 000703 27 FGSADLSPSGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1342)
Q Consensus 27 ~~a~~~s~~gllA~g-s~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1342)
.+-.--+|+|.+-.| ....=-++.+..+.+..-+.+|.- .....|-. --+.++|..+- -.+-.
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~--IsNgl~Wd~d~-------------K~fY~ 174 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVG--ISNGLAWDSDA-------------KKFYY 174 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-eeeehhcc--CCccccccccC-------------cEEEE
Confidence 455666788844222 121112555566666666777764 00000000 01346666442 23444
Q ss_pred EEeCCCcEEEEe--CCCCeE-----EEEecC---CCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEEE
Q 000703 106 AADRHGRVALLD--FRLRSV-----VLWIDP---DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1342)
Q Consensus 106 Sg~~dG~V~vWD--~~~g~~-----~~~l~~---~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1342)
.-+.+-.|.-|| ..+|.. +..+.- .++.. -..++...+ +.+-+++-+.++|...|..||+.+.++
T Consensus 175 iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~--PDGm~ID~e---G~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 175 IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE--PDGMTIDTE---GNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred EccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC--CCcceEccC---CcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 555666777788 445542 212110 01111 122333222 366677777889999999999999999
Q ss_pred eCCCCceEEEEecC
Q 000703 176 DASPEYLSCIRRNP 189 (1342)
Q Consensus 176 ~~~~~~v~~v~fsP 189 (1342)
..+...++|++|--
T Consensus 250 klPt~qitsccFgG 263 (310)
T KOG4499|consen 250 KLPTPQITSCCFGG 263 (310)
T ss_pred EcCCCceEEEEecC
Confidence 98888999999853
No 439
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=56.57 E-value=83 Score=42.17 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHhh---hcccCCCCchhH-HHHHHHhhhhcccchHHHHHHHHH-HHHHHHHhcCChhh
Q 000703 1110 EGEQAIQNRVHELVSVGNLEAAVSL---LLSTSPESSYFY-ANALRAVALSSAVSRSLLELAVKV-VAANMVRNDRSLSG 1184 (1342)
Q Consensus 1110 ~~~~~~~~~~~~~~~~g~~~~av~l---Ll~~~pe~~~~~-~~al~a~~~a~~~s~~~~~~~~k~-~a~~l~~~~~~~~g 1184 (1342)
...+...+++..+...|+.++|+++ .|+.+|++..|| ..++ +.. +.+.+....-+ +.. .+.....++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~----q~~~~~~~~lv~~l~-~~~~~~~~~~ 101 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSL----SRRPLNDSNLLNLID-SFSQNLKWAI 101 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHH----hhcchhhhhhhhhhh-hcccccchhH
Confidence 3456667899999999999999997 789999988655 3333 111 12222222111 112 1223334788
Q ss_pred hHHHH-hcC---chHHHH----HHhhccCcHHHHHHHHHhh--cCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCH
Q 000703 1185 THLLC-AVG---RYQEAC----SQLQDAGCWTDAATLAATH--LKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGL 1254 (1342)
Q Consensus 1185 v~~~~-~~g---~~~~a~----~~l~~~~~W~~a~~la~~~--l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~ 1254 (1342)
|..+| .+| +-+.|. .++...|++++|...-... +. .+-..+|.++|-.+... ++.+|+.+|.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~--dL~KA~~m~~----- 173 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE--DKEKAITYLK----- 173 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh--hHHHHHHHHH-----
Confidence 87777 333 333333 4556779999998887766 43 33467999999999766 5777777763
Q ss_pred HHHHHHHHhcCCchHH
Q 000703 1255 QEALAALREAQHPDTA 1270 (1342)
Q Consensus 1255 ~~~~~~l~~~~~~~~a 1270 (1342)
+|++.+...++|.-+
T Consensus 174 -KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 174 -KAIYRFIKKKQYVGI 188 (906)
T ss_pred -HHHHHHHhhhcchHH
Confidence 456666655555443
No 440
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.47 E-value=3.3e+02 Score=30.58 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=34.0
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCc-eeeeccccccEEEEEEe
Q 000703 763 YRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFS 803 (1342)
Q Consensus 763 ~dg~~LasGs~DgtI~lWDl~tg~-~~~l~~H~~~V~~v~fS 803 (1342)
-+|.+.++.=.-|+|...|+.+|+ +..+.-.+..|++++|-
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 378888888888999999999998 56665558899999996
No 441
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=56.45 E-value=4.1e+02 Score=33.53 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=80.3
Q ss_pred HHHHHHHHHHH---hhccchHHHHHHHHHHHHHcCCHHHHHhhhccc--------CCCCchhHHHHHHHhhhhccc----
Q 000703 1095 LWETAAERITW---HEKLEGEQAIQNRVHELVSVGNLEAAVSLLLST--------SPESSYFYANALRAVALSSAV---- 1159 (1342)
Q Consensus 1095 ~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~av~lLl~~--------~pe~~~~~~~al~a~~~a~~~---- 1159 (1342)
+.+.++++..- ++.+..+.+++.++.-+..+++.++||-++-+. .++|+ -+...+.-++++-..
T Consensus 221 l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~-~va~~l~nLa~ly~~~GKf 299 (508)
T KOG1840|consen 221 LCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP-AVAATLNNLAVLYYKQGKF 299 (508)
T ss_pred HHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhccCCh
Confidence 33455555332 223466777778999999999998888765432 12222 122223222222222
Q ss_pred --chHHHHHHHHHHHHHHHHhcC-----ChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCcc--HHHHHHHH
Q 000703 1160 --SRSLLELAVKVVAANMVRNDR-----SLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSD--YARVLQRW 1230 (1342)
Q Consensus 1160 --s~~~~~~~~k~~a~~l~~~~~-----~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~--~~~~~~~~ 1230 (1342)
+.++.+.+++..-..+..... +-+-...+|.-+++.+|++|+| +|+.+.+..+..++ .+..-.+.
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q------~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ------KALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH------HHHHHHHhhccccchHHHHHHHHH
Confidence 244556666665553333111 1233367888999999999999 77777775543333 23444555
Q ss_pred HHhhhcccccHHHHHHHH
Q 000703 1231 ADHVHHVEHNIWRALILY 1248 (1342)
Q Consensus 1231 ~~~l~~~~~~~~~a~~~~ 1248 (1342)
|.-++...+ ..+|..+|
T Consensus 374 ~~l~~~~gk-~~ea~~~~ 390 (508)
T KOG1840|consen 374 AELYLKMGK-YKEAEELY 390 (508)
T ss_pred HHHHHHhcc-hhHHHHHH
Confidence 554443332 34555554
No 442
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=55.00 E-value=42 Score=42.74 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=43.3
Q ss_pred CcEEEEEeCCCcEEEEeCCC----CeEEEEecCCCC-------------------CCCCeeEEEEeecCC-CCcEEEEEe
Q 000703 101 HLLLAAADRHGRVALLDFRL----RSVVLWIDPDPN-------------------PKLGIQDLCWIVSKP-DSFVLAAIN 156 (1342)
Q Consensus 101 g~~LASg~~dG~V~vWD~~~----g~~~~~l~~~~h-------------------~~~~V~~l~wsp~~~-~~~lLas~s 156 (1342)
...|+.+..||.+..-+... +..........+ ....+..++.+...- +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 45577777888877666543 322222211111 011345556655111 127999999
Q ss_pred CCCeEEEEECCCCeEEEEEeC
Q 000703 157 GPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
.|++||+||+.++.++...+.
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999877765
No 443
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=55.00 E-value=1e+02 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=40.2
Q ss_pred HHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000703 1198 CSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1198 ~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
++||...++.+.|+.+||... +-...-.+-|. .-..+|+.+|+|.+|+..|-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av--~lsP~~f~~W~-----------~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAV--ELSPSEFETWY-----------QLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHH--HhCchhHHHHH-----------HHHHHHHhcCCHHHHHHHHhc
Confidence 688999999999999999884 11122334443 345789999999999999987
No 444
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.85 E-value=2e+02 Score=32.57 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=91.8
Q ss_pred chHHHHH----HHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-hcCChhh
Q 000703 1110 EGEQAIQ----NRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR-NDRSLSG 1184 (1342)
Q Consensus 1110 ~~~~~~~----~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~-~~~~~~g 1184 (1342)
+.-|+++ ..+-.+++.|+.+ -+.+||+|+ -.-=|+=-+--++|+. |.+|++.+. .=.++.|
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~e-Vi~fLl~Te---------IVPlCLrime~GSelS----KtvA~fIlqKIlldD~G 201 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQE-VIRFLLTTE---------IVPLCLRIMESGSELS----KTVATFILQKILLDDVG 201 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHH-HHHHHHHhh---------hHHHHHHHHhcccHHH----HHHHHHHHHHHhhcccc
Confidence 4566643 3377888888877 777999998 3323333333445554 667886666 2233788
Q ss_pred hHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhccc-ccH-HHHHHHHHHhCCHHHHHHHHH
Q 000703 1185 THLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVE-HNI-WRALILYVAAGGLQEALAALR 1262 (1342)
Q Consensus 1185 v~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~-~~~-~~a~~~~~~~g~~~~~~~~l~ 1262 (1342)
..+.|.. +.|+. .+..+|.+-+.||.+.. ..+ ..+|.||+.+-+=-.|-++|+
T Consensus 202 L~YiCqt------------~eRF~-------------av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 202 LYYICQT------------AERFS-------------AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HHHHHHh------------HHHHH-------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888765 33332 24667777788885443 223 789999999999889999998
Q ss_pred h---cCCch-HHHHHHH---HHHHHhhhhhcccC
Q 000703 1263 E---AQHPD-TAAMFVL---ACREIYAEIITNLE 1289 (1342)
Q Consensus 1263 ~---~~~~~-~aa~~~~---~~~e~~~~~~~~~~ 1289 (1342)
+ -+++| .++.++. .|+.+.++-+.++.
T Consensus 257 ~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 257 SCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred hhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 7 34444 4455554 37777777766543
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=54.79 E-value=72 Score=40.00 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCceEeCCC------CeEEEEcCCeEEEEeCCC-----cce--eEeecCCCCCCCCCCCCCCCcE--EEEEEecCCCccc
Q 000703 27 FGSADLSPS------GLLAFASGSSISILDSRS-----LQL--ISTIPIPPPTSAGSVASLSPFV--TAVKWIPITLRCD 91 (1342)
Q Consensus 27 ~~a~~~s~~------gllA~gs~~~V~v~d~~s-----~~~--~~~l~~H~~~~~~~~~~~~~~V--t~v~~sp~~~~~~ 91 (1342)
|..+.|+|- .|||.-...+|.||-... .+. -|+-+.-.+ -+| -.+-|+|..
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~----------~pvLpQGCVWHPk~---- 124 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP----------FPVLPQGCVWHPKK---- 124 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC----------cccCCCcccccCCC----
Confidence 567899985 278888889999998642 222 223222111 011 235688763
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEEC
Q 000703 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT 166 (1342)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~ 166 (1342)
..|+.=.....-.+.+++........++.+ ++ -|.+.||.+||. +++++.++.=.-.+||-
T Consensus 125 ----------~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G-~IhCACWT~DG~--RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 125 ----------AILTVLTARDVSVLPSVHCDSSRVKADIKT-SG-LIHCACWTKDGQ--RLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ----------ceEEEEecCceeEeeeeeeCCceEEEeccC-Cc-eEEEEEecCcCC--EEEEEeCCeEEEEEecC
Confidence 455555444444577776544333433433 34 799999999873 66666665445568885
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.65 E-value=4.1e+02 Score=31.12 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCceEeCCCC-eEEEEcC-CeEEEEeCC-------CcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCC
Q 000703 27 FGSADLSPSG-LLAFASG-SSISILDSR-------SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEP 97 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~-~~V~v~d~~-------s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~ 97 (1342)
.=-++++|.| +.+...+ +...++|.. ...++-+++...+. ......|.+.|..-... ..+...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~------~~~~~PTGiVfN~~~~F--~vt~~g 96 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL------AAEGTPTGQVFNGSDTF--VVSGEG 96 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC------CCCCCccEEEEeCCCce--EEcCCC
Confidence 3468999998 5444443 677899875 12334556543320 11236788888754211 111000
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeE---EEEecCCCC-CCCCe-eEEEEeecCCCCcEEEEE-eCCCeEEEEECC
Q 000703 98 GSSHLLLAAADRHGRVALLDFRLRSV---VLWIDPDPN-PKLGI-QDLCWIVSKPDSFVLAAI-NGPSVLSLYNTT 167 (1342)
Q Consensus 98 ~p~g~~LASg~~dG~V~vWD~~~g~~---~~~l~~~~h-~~~~V-~~l~wsp~~~~~~lLas~-s~d~~i~lWd~~ 167 (1342)
.....+++-++.||+|-=|...-+.. ...+..+.. .+ .| ..|+....+. +.+|-++ =..++|.++|..
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g-avYkGLAi~~~~~-~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG-NVYKGLAVGPTGG-GDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCc-ceeeeeEEeecCC-CceEEEeccCCCceEEecCc
Confidence 01123467788999999999643322 111112111 12 34 5566655432 1333333 345677777753
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=2.5e+02 Score=34.95 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=30.9
Q ss_pred ceEEEEEccCC---CceEEEEcCCeEEEEEccCCceeEEEe
Q 000703 255 YMVKFTFSPHW---RHIIFVTFPRELVVFDLQYETPLFSAA 292 (1342)
Q Consensus 255 ~v~~~aFSpdg---~~ll~~~~d~~I~iwDl~t~~~l~~~~ 292 (1342)
.+.+++|+|+. .+++..+.|+.|+|||+..-+.+...+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 46788999986 788888999999999998777664433
No 448
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=52.74 E-value=2.7e+02 Score=33.25 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHhh---hcccCCCC
Q 000703 1114 AIQNRVHELVSVGNLEAAVSL---LLSTSPES 1142 (1342)
Q Consensus 1114 ~~~~~~~~~~~~g~~~~av~l---Ll~~~pe~ 1142 (1342)
....++..+...|+.++|+++ ++...|++
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 334567777777888877773 34444543
No 449
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=52.51 E-value=2.4e+02 Score=33.70 Aligned_cols=144 Identities=21% Similarity=0.214 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHhhhc---ccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCCh-h-h-h--
Q 000703 1114 AIQNRVHELVSVGNLEAAVSLLL---STSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSL-S-G-T-- 1185 (1342)
Q Consensus 1114 ~~~~~~~~~~~~g~~~~av~lLl---~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~-~-g-v-- 1185 (1342)
....++..+...|+.++|++++- +.+|.+. .+....+ ......+-++.+++.... ++..+... . . .
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la-~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE----GALQQLL-EIYQQEKDWQKAIDVAER-LEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH----HHHHHHH-HHHHHhchHHHHHHHHHH-HHHhcCCcchHHHHHH
Confidence 34577889999999999998544 4344432 2222111 111223344555554444 33322211 0 0 1
Q ss_pred -----HHHHhcCchHHHHHHhhcc-----CcHHHHHHHHHhhcCCccHHHHHHHHHHhhh-ccccc---HHHHHHHHHHh
Q 000703 1186 -----HLLCAVGRYQEACSQLQDA-----GCWTDAATLAATHLKGSDYARVLQRWADHVH-HVEHN---IWRALILYVAA 1251 (1342)
Q Consensus 1186 -----~~~~~~g~~~~a~~~l~~~-----~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~-~~~~~---~~~a~~~~~~~ 1251 (1342)
..++..|++.+|..+++.. +.+.--..++...+...+..+.++-+..-+. .+... +.....+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 1234457777777766542 1222223344443322333332222211111 11100 12334567778
Q ss_pred CCHHHHHHHHHh
Q 000703 1252 GGLQEALAALRE 1263 (1342)
Q Consensus 1252 g~~~~~~~~l~~ 1263 (1342)
|.+.+|.+.|.+
T Consensus 263 g~~~~A~~~l~~ 274 (389)
T PRK11788 263 GDEAEGLEFLRR 274 (389)
T ss_pred CCHHHHHHHHHH
Confidence 888888887776
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.45 E-value=1.3e+02 Score=35.01 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=52.5
Q ss_pred cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEe------CCCeEEEEECCCCeEEEE-EeCC-----C
Q 000703 112 RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN------GPSVLSLYNTTSASCMWK-YDAS-----P 179 (1342)
Q Consensus 112 ~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s------~d~~i~lWd~~tg~~i~~-~~~~-----~ 179 (1342)
-|++||+.+.+...- ..+-.+ .|.+|.|..+. ++++++. ....+..||..+.+ |. +... +
T Consensus 17 ~lC~yd~~~~qW~~~--g~~i~G-~V~~l~~~~~~---~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSP--GNGISG-TVTDLQWASNN---QLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred EEEEEECCCCEeecC--CCCceE-EEEEEEEecCC---EEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 489999987665443 123345 89999998543 7888774 45688899997653 53 3331 3
Q ss_pred CceEEEEecCCCCCEEEEE
Q 000703 180 EYLSCIRRNPFDARHFCVL 198 (1342)
Q Consensus 180 ~~v~~v~fsP~d~~~la~~ 198 (1342)
+++..+.+.-.|...+.++
T Consensus 89 gpv~a~~~~~~d~~~~~~a 107 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVA 107 (281)
T ss_pred CcEEEEEeeccCCceEEEe
Confidence 6788888866677666544
No 451
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.18 E-value=76 Score=36.71 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHcCCHHHHHh---hhcccCCCCchhHHH-------------HHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhh
Q 000703 1122 LVSVGNLEAAVS---LLLSTSPESSYFYAN-------------ALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGT 1185 (1342)
Q Consensus 1122 ~~~~g~~~~av~---lLl~~~pe~~~~~~~-------------al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv 1185 (1342)
+...++.++||+ -=|+..|.|.-||++ |.++|.-|-..-+.+++.- -++..-+.+.|+.++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay-~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY-GRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH-HHHHHHHHccCcHHHHH
Confidence 344455666666 346667777777764 3444443333334343331 12222233334434333
Q ss_pred HHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCc
Q 000703 1186 HLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGS 1221 (1342)
Q Consensus 1186 ~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~ 1221 (1342)
+. |++|...==+.-.|++.+..|...++++
T Consensus 170 ~a------ykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 170 EA------YKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HH------HHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 33 2222322333445666666666666444
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.89 E-value=1.9e+02 Score=34.28 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=33.4
Q ss_pred cEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE---EEEec-C-CCCCCCCeeEEEEeec
Q 000703 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV---VLWID-P-DPNPKLGIQDLCWIVS 145 (1342)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~---~~~l~-~-~~h~~~~V~~l~wsp~ 145 (1342)
.-++++|.||+ .+++ +...|+|++.+ .+|.. +..++ . ..... ...++++.|+
T Consensus 3 ~P~~~a~~pdG--------------~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~-gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDG--------------RLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGER-GLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTS--------------CEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTB-SEEEEEE-TT
T ss_pred CceEEEEeCCC--------------cEEE-EeCCceEEEEe-CCCcCcceecccccccccccC-Ccccceeccc
Confidence 34689999874 5555 46799999999 56654 33331 1 12234 7899999996
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=46.78 E-value=59 Score=25.24 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=24.2
Q ss_pred cCCCceEEEE-cCCeEEEEEccCCceeEEEec
Q 000703 263 PHWRHIIFVT-FPRELVVFDLQYETPLFSAAL 293 (1342)
Q Consensus 263 pdg~~ll~~~-~d~~I~iwDl~t~~~l~~~~l 293 (1342)
||++.+..+. .+++|.++|+++++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666555 578999999999988887765
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.28 E-value=95 Score=34.59 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=38.9
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEEE-------e-------CCCCceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 000703 150 FVLAAINGPSVLSLYNTTSASCMWKY-------D-------ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1342)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~~i~~~-------~-------~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d 208 (1342)
.+|++...+|.+.+||+.+++++..- . .....|..+.++. +|.-+++.+. |..+.|+
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEeC-CCEEEec
Confidence 67889999999999999998875432 1 1234566666665 6666666553 5566664
No 455
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=45.83 E-value=1.2e+02 Score=35.05 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcC--C--------chHHHHHHHHHHHHhhhhhc
Q 000703 1242 WRALILYVAAGGLQEALAALREAQ--H--------PDTAAMFVLACREIYAEIIT 1286 (1342)
Q Consensus 1242 ~~a~~~~~~~g~~~~~~~~l~~~~--~--------~~~aa~~~~~~~e~~~~~~~ 1286 (1342)
.+|++|+++.|+...|-+.|-+-. . +.++.-++++|.+...+.++
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999988622 1 23344566676665554444
No 456
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.92 E-value=5.1e+02 Score=34.19 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHh---hhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHH
Q 000703 1112 EQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLL 1188 (1342)
Q Consensus 1112 ~~~~~~~~~~~~~~g~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~ 1188 (1342)
.+....||+.++.+|..++|.. -+++..|++.....+-.. +|. -.+-++.+.-.+...|...= +.+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~--~L~---~~~~~eeA~~~~~~~l~~~p--~~~~~~~ 158 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR--GVK---RQQGIEAGRAEIELYFSGGS--SSAREIL 158 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH--HHH---HhccHHHHHHHHHHHhhcCC--CCHHHHH
Confidence 4555788999999999999988 467888886533222211 110 02233443333333222211 1121111
Q ss_pred HhcCchHHHHHHhhccCcHHHHHHHHHhhc-CCccHHHHHHHHHHhhhcccccHHHHHHHHHHh
Q 000703 1189 CAVGRYQEACSQLQDAGCWTDAATLAATHL-KGSDYARVLQRWADHVHHVEHNIWRALILYVAA 1251 (1342)
Q Consensus 1189 ~~~g~~~~a~~~l~~~~~W~~a~~la~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 1251 (1342)
.+. ..||..|+-.||..+=...+ ...+....+-.||.-|..... .++|...|.++
T Consensus 159 ~~a-------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a 214 (694)
T PRK15179 159 LEA-------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAG 214 (694)
T ss_pred HHH-------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 111 23555555555555444333 334567778888877765553 67888888775
No 457
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.50 E-value=5.6e+02 Score=29.44 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=67.1
Q ss_pred ceEeCCCC-eEE-EEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEE
Q 000703 29 SADLSPSG-LLA-FAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1342)
Q Consensus 29 a~~~s~~g-llA-~gs--~~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1342)
.+.+..+| |+- +|- .+.|+.+|+.+++.++..+.+.. .+=-.+....| .+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~----------~FgEGit~~~d---------------~l~ 103 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR----------YFGEGITILGD---------------KLY 103 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------EEEEEEETT---------------EEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc----------ccceeEEEECC---------------EEE
Confidence 45664566 333 332 36899999999998876665553 13333433322 233
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECCCCeEEEE
Q 000703 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK 174 (1342)
Q Consensus 105 ASg~~dG~V~vWD~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~ 174 (1342)
.--=.+|++.+||..+-+.+.++.+++ .-.+|+ .++ +.|...++...|..+|..+-+.+.+
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y~~----EGWGLt--~dg---~~Li~SDGS~~L~~~dP~~f~~~~~ 164 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPYPG----EGWGLT--SDG---KRLIMSDGSSRLYFLDPETFKEVRT 164 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE-SS----S--EEE--ECS---SCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred EEEecCCeEEEEccccceEEEEEecCC----cceEEE--cCC---CEEEEECCccceEEECCcccceEEE
Confidence 333467899999999999999987753 235566 333 4566666788999999887655443
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.17 E-value=1.1e+02 Score=39.40 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=56.5
Q ss_pred HHHhcCChhhhHHHHhcCc----hHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHHH
Q 000703 1175 MVRNDRSLSGTHLLCAVGR----YQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVA 1250 (1342)
Q Consensus 1175 l~~~~~~~~gv~~~~~~g~----~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 1250 (1342)
|+..++ |+....+...-+ |.==+.+|.++|.=.||...+-.-- +- . +|=..||.-.. ..+|+.+...
T Consensus 725 La~~~k-weeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~-~l--~---ekv~ay~~~~~--~~eAad~A~~ 795 (829)
T KOG2280|consen 725 LADIKK-WEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVG-GL--Q---EKVKAYLRVGD--VKEAADLAAE 795 (829)
T ss_pred HHhhhh-HHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccC-Ch--H---HHHHHHHHhcc--HHHHHHHHHH
Confidence 555666 888888888777 6667888889999988887764431 11 1 56666775443 5689999888
Q ss_pred hCCHHHHHHHHHh
Q 000703 1251 AGGLQEALAALRE 1263 (1342)
Q Consensus 1251 ~g~~~~~~~~l~~ 1263 (1342)
..+-....+++..
T Consensus 796 ~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 796 HRDGAELSEVLSK 808 (829)
T ss_pred hcChHHHHHHHHh
Confidence 8888777776654
No 459
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=42.88 E-value=3.1e+02 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecCCCC
Q 000703 27 FGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPIPPP 65 (1342)
Q Consensus 27 ~~a~~~s~~g-llA~gs~-~~V~v~d~~s~~~~~~l~~H~~ 65 (1342)
+++|+-.++| +|++..+ ++|.+.|+.+++++-.|.|...
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~ 186 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN 186 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC
Confidence 4678888887 7777755 7999999999999999988743
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.73 E-value=6e+02 Score=29.53 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=59.6
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEe------CCCcEEEEe
Q 000703 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD------RHGRVALLD 117 (1342)
Q Consensus 44 ~~V~v~d~~s~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~------~dG~V~vWD 117 (1342)
..|.+||..+.|-...-.+=.+ .|+.++|.-+ ..++|+|. ....+..||
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G-----------~V~~l~~~~~--------------~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISG-----------TVTDLQWASN--------------NQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred CEEEEEECCCCEeecCCCCceE-----------EEEEEEEecC--------------CEEEEEEeeEECCCCceeEEEEe
Confidence 4788999888776554444344 8999999843 36677775 456788999
Q ss_pred CCCCeEEEEecC---CCCCCCCeeEEEEeecCCCCcEEEEEe---CCCeEEEEECC
Q 000703 118 FRLRSVVLWIDP---DPNPKLGIQDLCWIVSKPDSFVLAAIN---GPSVLSLYNTT 167 (1342)
Q Consensus 118 ~~~g~~~~~l~~---~~h~~~~V~~l~wsp~~~~~~lLas~s---~d~~i~lWd~~ 167 (1342)
..+...... .. ..-.+ +|..+.+...+. +++.+++. ++..|.-||-.
T Consensus 71 ~~~~~w~~~-~~~~s~~ipg-pv~a~~~~~~d~-~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 71 FKNQTWSSL-GGGSSNSIPG-PVTALTFISNDG-SNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCCeeeec-CCcccccCCC-cEEEEEeeccCC-ceEEEeceecCCCceEEEEcCC
Confidence 977654322 11 01124 888887765432 25555443 34567778743
No 461
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=42.52 E-value=1.9e+02 Score=36.68 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHh---hhcccCCCCchhHHHHHHHhhh
Q 000703 1110 EGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVAL 1155 (1342)
Q Consensus 1110 ~~~~~~~~~~~~~~~~g~~~~av~---lLl~~~pe~~~~~~~al~a~~~ 1155 (1342)
+........|+-++.+|+.++|-+ -||+.+|||-.||..=..+.-+
T Consensus 36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 555555678999999999999888 7999999999999887777633
No 462
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=41.99 E-value=3.8e+02 Score=26.99 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=12.5
Q ss_pred hHHHHHHhhccCcHHHHHHHHH
Q 000703 1194 YQEACSQLQDAGCWTDAATLAA 1215 (1342)
Q Consensus 1194 ~~~a~~~l~~~~~W~~a~~la~ 1215 (1342)
...|.++|...+.|++|+.+.+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHH
Confidence 3446666666666665555553
No 463
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=41.66 E-value=3.6e+02 Score=35.62 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhhcccC
Q 000703 1113 QAIQNRVHELVSVGNLEAAVSLLLSTS 1139 (1342)
Q Consensus 1113 ~~~~~~~~~~~~~g~~~~av~lLl~~~ 1139 (1342)
+....+++.+...|+.++|++++-+..
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~ 117 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKT 117 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccc
Confidence 333466788888899999998776654
No 464
>PLN03077 Protein ECB2; Provisional
Probab=41.47 E-value=3.6e+02 Score=36.47 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHhcCchHHHHHHhh-----------------ccCcHHHHHHHHHhh----cCCcc--HHHHHHHHH-----------
Q 000703 1186 HLLCAVGRYQEACSQLQ-----------------DAGCWTDAATLAATH----LKGSD--YARVLQRWA----------- 1231 (1342)
Q Consensus 1186 ~~~~~~g~~~~a~~~l~-----------------~~~~W~~a~~la~~~----l~~~~--~~~~~~~~~----------- 1231 (1342)
..|+++|++++|.+.+. ..|++++|+.+-+.- +.+.+ +..++..++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 78888999888876543 468888888776532 22221 112333222
Q ss_pred ------Hhhhccccc-HHHHHHHHHHhCCHHHHHHHHHhcC-CchHH--HHHHHHHHHH
Q 000703 1232 ------DHVHHVEHN-IWRALILYVAAGGLQEALAALREAQ-HPDTA--AMFVLACREI 1280 (1342)
Q Consensus 1232 ------~~l~~~~~~-~~~a~~~~~~~g~~~~~~~~l~~~~-~~~~a--a~~~~~~~e~ 1280 (1342)
.+=..+... +.--+.+|..+|.+.+|.+++.+|. .+|.. ..++.+|+-+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 111112111 1234556778999999999999975 55554 3466688643
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.34 E-value=7.5e+02 Score=30.27 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=40.4
Q ss_pred eEEEEee-cCCEEEEEeCCCcEEEEECCCCce-eee---ccccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEE
Q 000703 757 LITAMAY-RLPHVVMGDRSGNIRWWDVTTGHS-SQF---STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827 (1342)
Q Consensus 757 ~V~~va~-dg~~LasGs~DgtI~lWDl~tg~~-~~l---~~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IW 827 (1342)
.+.++.| +.+.++.++.+|.|.... ..|+. ... ..-....++|.|.++ ++..+.+.+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~-------~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD-------KKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC-------CceEEEeCCcEEEEe
Confidence 3778888 555677777889876664 34442 221 233467889999776 345556688877544
No 466
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=41.24 E-value=58 Score=32.31 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred hHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHH--------------HHHHHHHH
Q 000703 1185 THLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIW--------------RALILYVA 1250 (1342)
Q Consensus 1185 v~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~a~~~~~~ 1250 (1342)
..-+|+| +.-+|-+--.|.+..++++|+.++=++.|++++....-.. .|..++.-
T Consensus 69 LVWCCKi-----------tKPCplRD~~l~ri~mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~alee 137 (153)
T COG4008 69 LVWCCKI-----------TKPCPLRDGVLNRINMSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREALEE 137 (153)
T ss_pred eeeeecC-----------CCCccccHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567887 5578999999999999999999999999999976542113 34444555
Q ss_pred hCCHHHHHHHHHhc
Q 000703 1251 AGGLQEALAALREA 1264 (1342)
Q Consensus 1251 ~g~~~~~~~~l~~~ 1264 (1342)
+|++..|.++|+++
T Consensus 138 agDl~~A~k~l~~~ 151 (153)
T COG4008 138 AGDLRTAMKILRMK 151 (153)
T ss_pred cCCHHHHHHHHHHh
Confidence 66777777766654
No 467
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.06 E-value=81 Score=35.70 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=72.4
Q ss_pred HHHhhccchHHHHHHH-HHHHHHcCCHHHHHh---hhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 000703 1103 ITWHEKLEGEQAIQNR-VHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRN 1178 (1342)
Q Consensus 1103 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~ 1178 (1342)
+.||..+..+....++ |..+-..|+-+.|++ -||+-+|-|.-+|-.=+ |++-|..-..+..+...+..=..|.-.
T Consensus 76 ~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl-Ailka~GK~l~aIk~ln~YL~~F~~D~ 154 (289)
T KOG3060|consen 76 NQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL-AILKAQGKNLEAIKELNEYLDKFMNDQ 154 (289)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHhcCcH
Confidence 3345544555555555 788888999999998 58999999988887444 334444444444444333332211112
Q ss_pred cCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhh
Q 000703 1179 DRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVH 1235 (1342)
Q Consensus 1179 ~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~ 1235 (1342)
.--++-..+|..-|.+..||=+|.. +.+. .+--...+.|+|+-+.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE-------~ll~-----~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEE-------LLLI-----QPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHH-------HHHc-----CCCcHHHHHHHHHHHH
Confidence 2335566888888888888876532 2222 2223567777777663
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.79 E-value=60 Score=25.10 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.3
Q ss_pred eEEEEEccCCCceEEEEcC
Q 000703 256 MVKFTFSPHWRHIIFVTFP 274 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~d 274 (1342)
-...+|||||+.|++++..
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 3455999999999999853
No 469
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=40.41 E-value=5.2e+02 Score=33.36 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCHHHHHhh---hcccCCCCc
Q 000703 1117 NRVHELVSVGNLEAAVSL---LLSTSPESS 1143 (1342)
Q Consensus 1117 ~~~~~~~~~g~~~~av~l---Ll~~~pe~~ 1143 (1342)
.++..+..+|+.++|+++ .|+.+|+++
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344445555555555552 344555544
No 470
>PLN03218 maturation of RBCL 1; Provisional
Probab=40.27 E-value=2.3e+02 Score=39.27 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHhCCHHHHHHHHHhcC
Q 000703 1244 ALILYVAAGGLQEALAALREAQ 1265 (1342)
Q Consensus 1244 a~~~~~~~g~~~~~~~~l~~~~ 1265 (1342)
-|..|...|.+.+|++++.+|+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3455777899999999988754
No 471
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.49 E-value=76 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=11.4
Q ss_pred HhcCchHHHHHHhhccCcHHHHHHHHH
Q 000703 1189 CAVGRYQEACSQLQDAGCWTDAATLAA 1215 (1342)
Q Consensus 1189 ~~~g~~~~a~~~l~~~~~W~~a~~la~ 1215 (1342)
...-.|..|.-.++....|.|++.+..
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~e 95 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334444444444444444444443
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=39.45 E-value=2.6e+02 Score=36.62 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=69.0
Q ss_pred cCCEEEEEeCCCcEEEEECCC-------C-------c----eee-e-ccccccEEEEEEe--cCCCCCCCCCEEEEEECC
Q 000703 764 RLPHVVMGDRSGNIRWWDVTT-------G-------H----SSQ-F-STHREGIRRIKFS--PVVPGDRSRGRIAVLFHD 821 (1342)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~t-------g-------~----~~~-l-~~H~~~V~~v~fS--Pd~~g~~~~~~Las~s~D 821 (1342)
+...|+.+..||.|.+|.+++ . . ... | .--...+++++++ .. . ..||++++-
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~----rlIAVSsNs 186 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--S----RLIAVSSNS 186 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--c----eEEEEecCC
Confidence 556899999999999997632 0 0 000 1 1123478888887 43 2 457778788
Q ss_pred CeEEEEECCCCC-cccccccCCCCCCCcEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEcc
Q 000703 822 NTFSVFDLDSQD-PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1342)
Q Consensus 822 gtI~IWDl~t~~-~l~~~l~~gh~~~~~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~ 882 (1342)
..|.||=....+ ..... ..|.+...|-+|.|.++..+..+-..|++++=.|.+-+|++.
T Consensus 187 ~~VTVFaf~l~~~r~~~~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHV--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEEeccccccccc--cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888554421 11110 112223458899999873222211467888999999999884
No 473
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.43 E-value=2.6e+02 Score=28.10 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCHHHHHh
Q 000703 1117 NRVHELVSVGNLEAAVS 1133 (1342)
Q Consensus 1117 ~~~~~~~~~g~~~~av~ 1133 (1342)
++|..+=.+|+.++||.
T Consensus 6 ~~A~a~d~~G~~~~Ai~ 22 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIP 22 (120)
T ss_pred HHHHHHHhcCCHHHHHH
Confidence 56778888999999997
No 474
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=39.36 E-value=54 Score=24.13 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEE
Q 000703 151 VLAAINGPSVLSLYNTTSASCMWKY 175 (1342)
Q Consensus 151 lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1342)
++..++.++.+...|..+|+.+|++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5667778999999999999999975
No 475
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.35 E-value=1.4e+02 Score=39.43 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEe-CCC---------cce---eEeecCCCCCCCCCCCCCCCcEEEEE
Q 000703 17 MLPGPPSRNNFGSADLSPSG-LLAFASGSSISILD-SRS---------LQL---ISTIPIPPPTSAGSVASLSPFVTAVK 82 (1342)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d-~~s---------~~~---~~~l~~H~~~~~~~~~~~~~~Vt~v~ 82 (1342)
++|-.+-.-.|.-+..||+| +||..+...|.|.. |+. ++. ..+++-... .+-...+..|..|+
T Consensus 77 L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 77 LLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFTSNSSLEIKQVR 153 (717)
T ss_pred eecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh---hccCCCCceEEEEE
Confidence 44444333357789999999 67754434444433 332 111 122221111 00012245899999
Q ss_pred EecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC
Q 000703 83 WIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL 120 (1342)
Q Consensus 83 ~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~ 120 (1342)
|+|.+ +++..|+.=..|+++|++|+..
T Consensus 154 WhP~s-----------~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 154 WHPWS-----------ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EcCCC-----------CCCCeEEEEecCCEEEEEecCC
Confidence 99985 4577888888999999999854
No 476
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=39.09 E-value=3e+02 Score=38.61 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHh---hhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHH
Q 000703 1112 EQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLL 1188 (1342)
Q Consensus 1112 ~~~~~~~~~~~~~~g~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~ 1188 (1342)
-+.+...++.++..|+.++|.+ .|++..|+++.+..-.. +..+.+.-....++. |..++..|+.+++++.|
T Consensus 62 p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~-~~~~~~~~~~~~l~~-----A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 62 PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT-TMLLSTPEGRQALQQ-----ARLLATTGRTEEALASY 135 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHhcCCchhhHHHH-----HHHHHhCCCHHHHHHHH
Confidence 4555778899999999999987 78999999876543111 111111111112222 33455566666666544
Q ss_pred Hhc--C---chHHHHHHhh----ccCcHHHHHHHHHhh
Q 000703 1189 CAV--G---RYQEACSQLQ----DAGCWTDAATLAATH 1217 (1342)
Q Consensus 1189 ~~~--g---~~~~a~~~l~----~~~~W~~a~~la~~~ 1217 (1342)
-.. + ....|..|++ ..|+|.+|+..-+.-
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 331 1 1222333333 347777777665544
No 477
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=38.48 E-value=3.2e+02 Score=38.46 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCHHHHHhh---hcccCCCCchh
Q 000703 1116 QNRVHELVSVGNLEAAVSL---LLSTSPESSYF 1145 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~l---Ll~~~pe~~~~ 1145 (1342)
..+++.+...|+.++|+++ .|+.+|+++..
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4567888899999999984 56778887643
No 478
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=38.00 E-value=1.5e+02 Score=39.07 Aligned_cols=79 Identities=25% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCChhhhHHHHh----cCchHHHHH----HhhccCcHHHHH--HHHHhhcCCccHHHHHHHHHHhhhcccc
Q 000703 1170 VVAANMVRNDRSLSGTHLLCA----VGRYQEACS----QLQDAGCWTDAA--TLAATHLKGSDYARVLQRWADHVHHVEH 1239 (1342)
Q Consensus 1170 ~~a~~l~~~~~~~~gv~~~~~----~g~~~~a~~----~l~~~~~W~~a~--~la~~~l~~~~~~~~~~~~~~~l~~~~~ 1239 (1342)
..|.++.+-|+++++..++.- .-+...|-. ..+.+|.=++|. |+..+||++++. +...+|++...+=+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-e~W~~ladls~~~~- 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-ELWKRLADLSEQLG- 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHhcc-
Confidence 457777778888887766543 233333333 346778888875 788899999999 99999999887554
Q ss_pred cHHHHHHHHHH
Q 000703 1240 NIWRALILYVA 1250 (1342)
Q Consensus 1240 ~~~~a~~~~~~ 1250 (1342)
|+.+|+.||.+
T Consensus 222 ~i~qA~~cy~r 232 (895)
T KOG2076|consen 222 NINQARYCYSR 232 (895)
T ss_pred cHHHHHHHHHH
Confidence 46777777654
No 479
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=37.25 E-value=3.7e+02 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=16.1
Q ss_pred hhhhHHHHhcCchHHHHHHhhcc-CcHHHHHHHHHh
Q 000703 1182 LSGTHLLCAVGRYQEACSQLQDA-GCWTDAATLAAT 1216 (1342)
Q Consensus 1182 ~~gv~~~~~~g~~~~a~~~l~~~-~~W~~a~~la~~ 1216 (1342)
.+.|-++.+.|.+++|++.+... +.=+.|+..|+.
T Consensus 86 ~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 86 EEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 34445555554444444444433 344444444443
No 480
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.24 E-value=4.3e+02 Score=33.41 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHhhh---cccCCCCchhHHHHHHHhhh-----hcccchHHHHHHHHHHHHHHHHhcC
Q 000703 1109 LEGEQAIQNRVHELVSVGNLEAAVSLL---LSTSPESSYFYANALRAVAL-----SSAVSRSLLELAVKVVAANMVRNDR 1180 (1342)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~g~~~~av~lL---l~~~pe~~~~~~~al~a~~~-----a~~~s~~~~~~~~k~~a~~l~~~~~ 1180 (1342)
.+.-+.++.||-.++-.|.-..|+++| |...|- |+...-.+-=. .+-.++..+....++....-...+-
T Consensus 350 P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 350 PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 477888899999999999999999965 333333 33322210001 1334566665555555553444331
Q ss_pred -Ch----hhh-HHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhhcccccHHHHHHHHH
Q 000703 1181 -SL----SGT-HLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYV 1249 (1342)
Q Consensus 1181 -~~----~gv-~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 1249 (1342)
.+ .|. .+|-+-|+++.|+++++.. ...++.+ ..+.-|+++-|..++++. .||.-|.
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~A-----------L~v~Pnd-~~lWNRLGAtLAN~~~s~-EAIsAY~ 488 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAA-----------LQVKPND-YLLWNRLGATLANGNRSE-EAISAYN 488 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHH-----------HhcCCch-HHHHHHhhHHhcCCcccH-HHHHHHH
Confidence 22 233 6788899999999988742 2233332 457888888888877543 6666553
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=36.99 E-value=6.2e+02 Score=31.56 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=34.0
Q ss_pred EEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCC----C-CCCCCeeEEEEeecC
Q 000703 78 VTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPD----P-NPKLGIQDLCWIVSK 146 (1342)
Q Consensus 78 Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD~~~g~~~~~l~~~----~-h~~~~V~~l~wsp~~ 146 (1342)
-+.++|.|| |.+|++--..|+|++++-.++.......++ . ..+ ...+|+|+|+-
T Consensus 32 Pw~maflPD--------------G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~-GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPD--------------NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHN-GLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCC--------------CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCC-ceeeEEECCCc
Confidence 357888876 456666544699999986655432211111 1 234 78999999974
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=36.91 E-value=1.7e+02 Score=31.12 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.9
Q ss_pred cEEEEEEeCCCCCCCCCeEEEEEeCCCcEEEEEccC
Q 000703 848 LVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1342)
Q Consensus 848 ~V~~l~ws~d~~~~g~~~~L~s~s~DgtIrvWdi~~ 883 (1342)
.|.+++|+|.--......+|++.+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 688999999411123345799999999999998663
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.54 E-value=3.3e+02 Score=33.31 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=49.1
Q ss_pred cccccEEEEEEecCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccCCCC-CCCcEEEEEEeCCCCCCCCCeEEEEE
Q 000703 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQF-PGTLVLELDWLPTRTDKNDPLVLCIA 870 (1342)
Q Consensus 792 ~H~~~V~~v~fSPd~~g~~~~~~Las~s~DgtI~IWDl~t~~~l~~~l~~gh~-~~~~V~~l~ws~d~~~~g~~~~L~s~ 870 (1342)
..+|+|.+|+|||| + +.||+--.|.+|.+.+....++.. .+.+.|. ....|....|+.. ..+ |..
T Consensus 64 ~d~G~I~SIkFSlD--n----kilAVQR~~~~v~f~nf~~d~~~l-~~~~~ck~k~~~IlGF~W~~s-----~e~--A~i 129 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLD--N----KILAVQRTSKTVDFCNFIPDNSQL-EYTQECKTKNANILGFCWTSS-----TEI--AFI 129 (657)
T ss_pred cCCCceeEEEeccC--c----ceEEEEecCceEEEEecCCCchhh-HHHHHhccCcceeEEEEEecC-----eeE--EEE
Confidence 35789999999999 4 678998899999999884433221 1112232 2345999999864 333 322
Q ss_pred eCCCcEEEEEcc
Q 000703 871 GADSSFRLIEVN 882 (1342)
Q Consensus 871 s~DgtIrvWdi~ 882 (1342)
+ |.-+.+|.+.
T Consensus 130 ~-~~G~e~y~v~ 140 (657)
T KOG2377|consen 130 T-DQGIEFYQVL 140 (657)
T ss_pred e-cCCeEEEEEc
Confidence 2 4446666654
No 484
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.27 E-value=1.7e+02 Score=33.12 Aligned_cols=76 Identities=20% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHH-HHHhh-----cCCccHHHHHHHHHHhhhcccccHH
Q 000703 1169 KVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAAT-LAATH-----LKGSDYARVLQRWADHVHHVEHNIW 1242 (1342)
Q Consensus 1169 k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~-la~~~-----l~~~~~~~~~~~~~~~l~~~~~~~~ 1242 (1342)
.-+|.++-...++-|.|+++ ..||-..+..|+=.-|+- |=|+. .++++.-.+.+|-++-+.+.+. ..
T Consensus 75 EqaamLake~~klsEvvdl~------eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr-~~ 147 (308)
T KOG1585|consen 75 EQAAMLAKELSKLSEVVDLY------EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR-DQ 147 (308)
T ss_pred HHHHHHHHHHHHhHHHHHHH------HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-HH
Confidence 33444444466767777764 445666666666543332 22221 4556666677777777766663 34
Q ss_pred HHHHHHHHh
Q 000703 1243 RALILYVAA 1251 (1342)
Q Consensus 1243 ~a~~~~~~~ 1251 (1342)
+|..+|.++
T Consensus 148 ma~el~gk~ 156 (308)
T KOG1585|consen 148 MAFELYGKC 156 (308)
T ss_pred HHHHHHHHh
Confidence 666665443
No 485
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.25 E-value=4.5e+02 Score=35.43 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCChhhhHHHHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHH------------hh-
Q 000703 1168 VKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWAD------------HV- 1234 (1342)
Q Consensus 1168 ~k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~------------~l- 1234 (1342)
++-|+.-+..+++.+.+--+|..+-.+.....+|+..|+..-|+.-|+..-+.+-.++||-.-.+ |+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 45667777777886666688888999999999999999999999999988666666666543322 33
Q ss_pred hcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHH--HHHHH-----------HHHHHhhhhhcc
Q 000703 1235 HHVEHNIWRALILYVAAGGLQEALAALREAQHPDTA--AMFVL-----------ACREIYAEIITN 1287 (1342)
Q Consensus 1235 ~~~~~~~~~a~~~~~~~g~~~~~~~~l~~~~~~~~a--a~~~~-----------~~~e~~~~~~~~ 1287 (1342)
.+.+ .+..-+..|-.-|.|++.+.||-..==..+| +||.| .-+|+++..++-
T Consensus 1277 vhad-eLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1277 VHAD-ELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred EehH-hHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1111 1467788899999999999998752222333 33433 267888888774
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=35.59 E-value=5.4e+02 Score=30.49 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=56.2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE---EEEe----eecCCCeEEEEEcCC----C
Q 000703 503 TVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV---TASF----SVHNGTVRGLRWLGN----S 571 (1342)
Q Consensus 503 ~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~---~~~l----~gH~~~V~~l~fs~d----~ 571 (1342)
..++|+|.| ++.++++ ...|.|++++ ..|.. +..+ ........+|+|.|+ +
T Consensus 3 ~P~~~a~~p----------------dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~ 64 (331)
T PF07995_consen 3 NPRSMAFLP----------------DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG 64 (331)
T ss_dssp SEEEEEEET----------------TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-
T ss_pred CceEEEEeC----------------CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCC
Confidence 457889988 5777664 6699999999 45554 2222 122346788999884 4
Q ss_pred cE-EEEecCCcccccCcccCEEEEEEcCCC--c----eeeeEEecc--CCCCCeEEEEEcCCCCEEEEEECC
Q 000703 572 RL-VSFSYSQVNEKSGGYINRLVVTCLRSG--I----NRAFRVLQK--PERAPIRALRASSSGRYLLILFRD 634 (1342)
Q Consensus 572 ~l-lS~s~d~~~~~sg~~~~~i~lwD~~tG--~----~~~l~~l~g--~h~~~I~~i~~Spdg~~Las~s~D 634 (1342)
.+ ++.+.... ..+..++.|.-|....+ . ...+..+.. ........|.|.|||.+.++.+..
T Consensus 65 ~lYv~~t~~~~--~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 65 YLYVYYTNADE--DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEE-T--SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred EEEEEEEcccC--CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 43 33332100 01222334444444333 1 112222221 123355779999999665555443
No 487
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=35.25 E-value=5.2e+02 Score=34.10 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHh
Q 000703 1243 RALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1243 ~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
.-..+|...|.+.+|.+++.+
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~ 184 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDE 184 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 334455678888888888876
No 488
>PRK13684 Ycf48-like protein; Provisional
Probab=35.07 E-value=8.3e+02 Score=28.95 Aligned_cols=105 Identities=9% Similarity=0.015 Sum_probs=54.8
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEE-EeCCCCcEEEEee-ecCCCeEEEEEcCCCcEEEEecC
Q 000703 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDV-VDVSANAVTASFS-VHNGTVRGLRWLGNSRLVSFSYS 579 (1342)
Q Consensus 502 ~~vt~la~~pp~~~~~~~~~~~~~~~~~~llAsGs~DGtI~l-WDl~tg~~~~~l~-gH~~~V~~l~fs~d~~llS~s~d 579 (1342)
..++.+.+.| ++.++++| ..|.+.. +|- .++.-.... .-...++++.+.++++++.++..
T Consensus 173 g~~~~i~~~~----------------~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 173 GVVRNLRRSP----------------DGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred ceEEEEEECC----------------CCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 4567778777 45666655 4565542 232 222111222 22357889999998887766543
Q ss_pred CcccccCcccCEEEEEEcCCCceeeeEEeccC---CCCCeEEEEEcCCCCEEEEEECCCCE
Q 000703 580 QVNEKSGGYINRLVVTCLRSGINRAFRVLQKP---ERAPIRALRASSSGRYLLILFRDAPV 637 (1342)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~g~---h~~~I~~i~~Spdg~~Las~s~D~tI 637 (1342)
. .+++-....|.. ......+ ....+.++.+.++++.++++ .++.+
T Consensus 235 G----------~~~~~s~d~G~s--W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v 282 (334)
T PRK13684 235 G----------QIRFNDPDDLES--WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL 282 (334)
T ss_pred C----------EEEEccCCCCCc--cccccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence 2 333322233431 1110111 12357888999988866655 44543
No 489
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=34.98 E-value=42 Score=38.45 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCHHHHHhhhcc---c--CCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcC-----Chhhh
Q 000703 1116 QNRVHELVSVGNLEAAVSLLLS---T--SPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDR-----SLSGT 1185 (1342)
Q Consensus 1116 ~~~~~~~~~~g~~~~av~lLl~---~--~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~-----~~~gv 1185 (1342)
.++|..+...|++++|.+.|.+ . +|+++.|+.- + | -+| .+.+-.+.+++..-. |+..+. ...-+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-~-a-~La--~~~~~~~~A~~ay~~-l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRL-L-A-DLA--WSLGDYDEAIEAYEK-LLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-c-c-ccc--ccccccccccccccc-cccccccccccccccc
Confidence 4679999999999999997742 3 3666666532 1 1 111 222222333222222 222221 12222
Q ss_pred HHHHhcCchHHHHHHhhcc-------CcHHHHHHHHHhhcCCccHHHHHHHHHHhhhc--ccccH-HHHHHHHHHhCCHH
Q 000703 1186 HLLCAVGRYQEACSQLQDA-------GCWTDAATLAATHLKGSDYARVLQRWADHVHH--VEHNI-WRALILYVAAGGLQ 1255 (1342)
Q Consensus 1186 ~~~~~~g~~~~a~~~l~~~-------~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~~--~~~~~-~~a~~~~~~~g~~~ 1255 (1342)
.+ ..-+++++|.+++... ..|..++.++...-.-++..+++++... +.. .+... .....+|...|.+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE-LPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33 4567788887776542 4455566655544333445556666442 221 11112 34556677888888
Q ss_pred HHHHHHHh
Q 000703 1256 EALAALRE 1263 (1342)
Q Consensus 1256 ~~~~~l~~ 1263 (1342)
+|++.+.+
T Consensus 164 ~A~~~~~~ 171 (280)
T PF13429_consen 164 KALRDYRK 171 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
No 490
>PLN03218 maturation of RBCL 1; Provisional
Probab=34.70 E-value=3.1e+02 Score=38.06 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcC
Q 000703 1243 RALILYVAAGGLQEALAALREAQ 1265 (1342)
Q Consensus 1243 ~a~~~~~~~g~~~~~~~~l~~~~ 1265 (1342)
.-|..|.++|.+.+|.+++.+++
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 44556778888888888888753
No 491
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=34.43 E-value=8.8e+02 Score=29.06 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=33.5
Q ss_pred eEEEEEccCCCceEEEEcC-------------------CeEEEEEccCCceeEEEecCCCccceEEEEEcCCCCEEEEEe
Q 000703 256 MVKFTFSPHWRHIIFVTFP-------------------RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH 316 (1342)
Q Consensus 256 v~~~aFSpdg~~ll~~~~d-------------------~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~ 316 (1342)
...++|.|||+-.++.+.. +.|.-+|..+++. ..+. .+......+++.++|+++++-+
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a--~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVA--HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEe--cCcCCCccceECCCCCEEEEcc
Confidence 3456899998755554421 4566777765543 2222 2233345677788887766544
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=34.11 E-value=77 Score=30.10 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=27.0
Q ss_pred cCEEEEEEcCCCceeeeEEeccCCCCCeEEEEEcCCCCEEEEE
Q 000703 589 INRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLIL 631 (1342)
Q Consensus 589 ~~~i~lwD~~tG~~~~l~~l~g~h~~~I~~i~~Spdg~~Las~ 631 (1342)
.+.+.-+|+.|++.+.+.. + -.--++|++|+|+++|+++
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~--L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--G--LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--E--ESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehh--C--CCccCeEEEcCCCCEEEEE
Confidence 4578889999988544331 1 2345899999999998876
No 493
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=33.78 E-value=1.9e+02 Score=35.68 Aligned_cols=101 Identities=20% Similarity=0.107 Sum_probs=61.2
Q ss_pred EEEEcCCeEEEEeCCCcc-eeEeecCCCCCCCCCCCCCCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEE
Q 000703 38 LAFASGSSISILDSRSLQ-LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL 116 (1342)
Q Consensus 38 lA~gs~~~V~v~d~~s~~-~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vW 116 (1342)
|+--++.+|.-.||+-.. .+.+ ..-+. .++.=.||.-+. ...-++|.|+..|.|+++
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v-~esKd-----------Y~tKn~Fss~~t----------TesGyIa~as~kGDirLy 588 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKV-VESKD-----------YKTKNKFSSGMT----------TESGYIAAASRKGDIRLY 588 (776)
T ss_pred EEeecccceEEecccccCCceee-eeehh-----------cccccccccccc----------ccCceEEEecCCCceeee
Confidence 433466777777876322 1211 12222 455556664431 123489999999999999
Q ss_pred eCCCCeEEEEecCCCCCCCCeeEEEEeecCCCCcEEEEEeCCCeEEEEECC
Q 000703 117 DFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1342)
Q Consensus 117 D~~~g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1342)
|-..-+.... +++-.. .|..+.-+.+|+ .+||+| .++|.|=|+.
T Consensus 589 DRig~rAKta--lP~lG~-aIk~idvta~Gk--~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 589 DRIGKRAKTA--LPGLGD-AIKHIDVTANGK--HILATC--KNYLLLTDVP 632 (776)
T ss_pred hhhcchhhhc--Cccccc-ceeeeEeecCCc--EEEEee--cceEEEEecc
Confidence 9543333233 344444 788888888773 778877 4678887763
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=33.48 E-value=87 Score=24.32 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=21.6
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEeC
Q 000703 153 AAINGPSVLSLYNTTSASCMWKYDA 177 (1342)
Q Consensus 153 as~s~d~~i~lWd~~tg~~i~~~~~ 177 (1342)
..+..++.|.-.|+.||+.+|++..
T Consensus 4 ~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 4 YVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEeCCCCEEEEEECCCCCEEEeeeC
Confidence 3348899999999999999999876
No 495
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.46 E-value=1e+03 Score=29.42 Aligned_cols=152 Identities=11% Similarity=0.018 Sum_probs=81.6
Q ss_pred cEEEEEeCCCeEEEEECCCCe-----EEEEEeCCCCceEEEEecCC----CCCEEEEEeCCCeEEEEEecCCcccceeee
Q 000703 150 FVLAAINGPSVLSLYNTTSAS-----CMWKYDASPEYLSCIRRNPF----DARHFCVLGLKGLLLSVRVLGQKEDEVVVK 220 (1342)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~-----~i~~~~~~~~~v~~v~fsP~----d~~~la~~s~dG~v~~~d~~~~~~~~~~~k 220 (1342)
+.+++|+-.|.|+|++...+. .+..... ..+|..+...+| +...||+.-+ ..+.++.+....+..--+.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP-~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHP-RKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecC-CEEEEEEEEecCCCcccCc
Confidence 688899999999999986433 3444444 578888888877 4457777765 4555555533111100000
Q ss_pred eEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC----CCceE-EEEcCCeEEEEEccCCceeEEEecCC
Q 000703 221 ELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH----WRHII-FVTFPRELVVFDLQYETPLFSAALPR 295 (1342)
Q Consensus 221 ~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpd----g~~ll-~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1342)
.+.+ ..+..| ..+.....++.-|= |+.++ .=+.||.+.+|+-+.-.....++.--
T Consensus 116 ~~~L-------~~~yeh-------------~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 116 QYQL-------ELIYEH-------------SLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred EEEE-------EEEEEE-------------ecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 1110 000000 00111222333332 23333 34579999999987544332222111
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000703 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1342)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1342)
-++| +.+|+..+.+++++.+..|.-...
T Consensus 176 lPgP---l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGP---LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcC---eEEeecCCEEEEecCceeEEEecH
Confidence 1123 456777888888888777665543
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=33.38 E-value=1.3e+03 Score=30.78 Aligned_cols=171 Identities=12% Similarity=0.140 Sum_probs=90.7
Q ss_pred CCCcEEEEEEecCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe------C---C------CCeEEEEecCCCCCCCCee
Q 000703 74 LSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD------F---R------LRSVVLWIDPDPNPKLGIQ 138 (1342)
Q Consensus 74 ~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~V~vWD------~---~------~g~~~~~l~~~~h~~~~V~ 138 (1342)
...+|..|+|+-... ...+...+||.=-... +.|.. + . ....+..+....-.+.+..
T Consensus 78 ~~~PI~qI~fa~~~~-------~~~~~~~~l~Vrt~~s-t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 78 DGSPIKQIKFATLSE-------SFDEKSRWLAVRTETS-TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCeeEEEeccccc-------ccCCcCcEEEEEcCCE-EEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 356899999982210 0112234666554444 33444 1 1 1123444432222233789
Q ss_pred EEEEeecCCCCcEEEEEeCCCeEEEEECCCCe----EEEEEeCC-CCce----------EEEEecCCCCCEEEEEeCCCe
Q 000703 139 DLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS----CMWKYDAS-PEYL----------SCIRRNPFDARHFCVLGLKGL 203 (1342)
Q Consensus 139 ~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~----~i~~~~~~-~~~v----------~~v~fsP~d~~~la~~s~dG~ 203 (1342)
+++|.|+.. ..+|..+..|...|||+..+. ..+..... .+.+ ..+.|.+ +..+|.+++. ..
T Consensus 150 Dv~FnP~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 150 DVAFNPWDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SK 225 (765)
T ss_pred eEEeccCcc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-Cc
Confidence 999999864 689999999999999992111 12222211 1222 1223333 3333333332 22
Q ss_pred EEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcc
Q 000703 204 LLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ 283 (1342)
Q Consensus 204 v~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~aFSpdg~~ll~~~~d~~I~iwDl~ 283 (1342)
+..+|+.+.... .. +. .......++.+.-+|+....++..+..+|...|+.
T Consensus 226 l~~~d~~~~~~~--------------~~--l~-------------~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~ 276 (765)
T PF10214_consen 226 LMLIDFESNWQT--------------EY--LV-------------TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVK 276 (765)
T ss_pred eEEEECCCCCcc--------------ch--hc-------------cCCChhheeeEEecCCccceEEEEecCeEEEEEcc
Confidence 333333221000 00 10 11233468888999998888888899999999998
Q ss_pred CC
Q 000703 284 YE 285 (1342)
Q Consensus 284 t~ 285 (1342)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 74
No 497
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=33.03 E-value=3.1e+02 Score=32.45 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHH---------HHHHHHHHhcCChhhhHH
Q 000703 1117 NRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVK---------VVAANMVRNDRSLSGTHL 1187 (1342)
Q Consensus 1117 ~~~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k---------~~a~~l~~~~~~~~gv~~ 1187 (1342)
.-+..+|..|+..+|-++-=+-.=-..+||.--++| +|..--=+-++.-.| -....++..|.-.++..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~a--La~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKA--LAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHH--HHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 335667889998888775443332245676544544 333322111111111 123334555555566665
Q ss_pred HHhcCchHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHH
Q 000703 1188 LCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVL 1227 (1342)
Q Consensus 1188 ~~~~g~~~~a~~~l~~~~~W~~a~~la~~~l~~~~~~~~~ 1227 (1342)
.-.+.. .+-|.++...|.|++|+..|...=+.+....+.
T Consensus 260 I~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~ 298 (319)
T PF04840_consen 260 IPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQIL 298 (319)
T ss_pred HHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 556554 666777777788888888887764333333333
No 498
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.59 E-value=1.2e+03 Score=31.90 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=73.0
Q ss_pred hhhhHHHHhcCchHHHHHHhhccCcH------HHH--HHHHHhh--------cCCccHHHHHHHHHHhhhcccccHHHHH
Q 000703 1182 LSGTHLLCAVGRYQEACSQLQDAGCW------TDA--ATLAATH--------LKGSDYARVLQRWADHVHHVEHNIWRAL 1245 (1342)
Q Consensus 1182 ~~gv~~~~~~g~~~~a~~~l~~~~~W------~~a--~~la~~~--------l~~~~~~~~~~~~~~~l~~~~~~~~~a~ 1245 (1342)
.+-|+.--..|++.|.++|||....= .-+ ..+||+. +.++-.+ -++.-++++.+.. ++..|-
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A-~i~~vGdrcf~~~-~y~aAk 1214 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA-NIQQVGDRCFEEK-MYEAAK 1214 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-hHHHHhHHHhhhh-hhHHHH
Confidence 44455556666777777776643211 111 2234443 2222222 2345566666443 468899
Q ss_pred HHHHHhCCHHHHHHHHHhcCCchHH-------------HHHHHHHHHHhhhhhcccCCCCCCCCCccCCCCCCCCCCC--
Q 000703 1246 ILYVAAGGLQEALAALREAQHPDTA-------------AMFVLACREIYAEIITNLENSDDESGSSTNNVPDNLPGLS-- 1310 (1342)
Q Consensus 1246 ~~~~~~g~~~~~~~~l~~~~~~~~a-------------a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 1310 (1342)
+||....+|-+.+..|-..+.|.-| -...-||-+.....+-- +=||+
T Consensus 1215 l~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ------------------iCGL~ii 1276 (1666)
T KOG0985|consen 1215 LLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ------------------ICGLNII 1276 (1666)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH------------------hcCceEE
Confidence 9999888999988888887777665 12444565554443331 33666
Q ss_pred CCchhhhHHHHHHHH
Q 000703 1311 PENEDVRAVGEYFGQ 1325 (1342)
Q Consensus 1311 ~~~~~~~~~~~~~~~ 1325 (1342)
.+-|+|..+.|||+.
T Consensus 1277 vhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQD 1291 (1666)
T ss_pred EehHhHHHHHHHHHh
Confidence 677888888887764
No 499
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.39 E-value=1e+02 Score=24.01 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCceEEEEecCCCCCEEEEEeCCCeEEEEEe
Q 000703 169 ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1342)
Q Consensus 169 g~~i~~~~~~~~~v~~v~fsP~d~~~la~~s~dG~v~~~d~ 209 (1342)
|+.+|++..........+. ++.++.+++.||.++.+|.
T Consensus 1 G~~~W~~~~~~~~~~~~~v---~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAV---AGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS---S--EE---CTSEEEEE-TTSEEEEEET
T ss_pred CceeEEEECCCCcCcCCEE---ECCEEEEEcCCCEEEEEeC
Confidence 4566766653211123333 4567888888999998874
No 500
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=31.96 E-value=3.3e+02 Score=28.04 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred HHHHHHcCCHHHHHhhhcccCCCCchhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhcCChhhhHHHHhcCchHHHH
Q 000703 1119 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEAC 1198 (1342)
Q Consensus 1119 ~~~~~~~g~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~gv~~~~~~g~~~~a~ 1198 (1342)
|.+.+..|.+++-|+++.++--.++-.-.||. -|=+--+.+..+.-.+...++..|= +-.+|..+--+
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWv-ICNiiDaa~C~yvv~~LdsIGkiFD-----------is~C~NlKrVi 76 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWV-ICNIIDAADCDYVVETLDSIGKIFD-----------ISKCGNLKRVI 76 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHH-HHHHHHH--HHHHHHHHHHHGGGS------------GGG-S-THHHH
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCcccccee-eeecchhhchhHHHHHHHHHhhhcC-----------chhhcchHHHH
Confidence 68899999999999998887644444444554 2222233344544444333333221 22345556666
Q ss_pred HHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHhhh-ccccc--H-HHHHHHHHHhCCHHHHHHHHHh
Q 000703 1199 SQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVH-HVEHN--I-WRALILYVAAGGLQEALAALRE 1263 (1342)
Q Consensus 1199 ~~l~~~~~W~~a~~la~~~l~~~~~~~~~~~~~~~l~-~~~~~--~-~~a~~~~~~~g~~~~~~~~l~~ 1263 (1342)
.+..-.|--.|=+.+|...+-.+...+.|++-...|. ..+.+ + .+-..-|-++|+..++-+||.+
T Consensus 77 ~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 77 ECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 6666667777888888877766667788898888886 22222 1 3344457889999999999986
Done!